{ "session": { "name": "GSE305230_RNAseq_expression", "description": "Auto-generated session for GSE305230 on 2026-05-14T16:04:52", "views": [ { "id": "lgv1", "type": "LinearGenomeView", "tracks": [ { "id": "F-8qwRhumS", "type": "FeatureTrack", "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8", "minimized": false, "displays": [ { "id": "uZq89S4_XC", "type": "LinearBasicDisplay", "heightPreConfig": 152, "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8-LinearBasicDisplay" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166030", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166030-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166031", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166031-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166032", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166032-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166033", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166033-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166034", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166034-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166035", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166035-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166036", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166036-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166037", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166037-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166038", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166038-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166039", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166039-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166040", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166040-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166041", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166041-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166042", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166042-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166043", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166043-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166044", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166044-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166045", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166045-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166046", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166046-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166047", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166047-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166048", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166048-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166049", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166049-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166050", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166050-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166051", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166051-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166052", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166052-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166053", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166053-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166054", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166054-LinearWiggleDisplay", "color": "#e377c2", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166055", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166055-LinearWiggleDisplay", "color": "#e377c2", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166056", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166056-LinearWiggleDisplay", "color": "#e377c2", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166057", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166057-LinearWiggleDisplay", "color": "#e377c2", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166058", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166058-LinearWiggleDisplay", "color": "#7f7f7f", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166059", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166059-LinearWiggleDisplay", "color": "#7f7f7f", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166060", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166060-LinearWiggleDisplay", "color": "#7f7f7f", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166061", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166061-LinearWiggleDisplay", "color": "#7f7f7f", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166062", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166062-LinearWiggleDisplay", "color": "#bcbd22", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166063", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166063-LinearWiggleDisplay", "color": "#bcbd22", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166064", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166064-LinearWiggleDisplay", "color": "#bcbd22", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166065", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166065-LinearWiggleDisplay", "color": "#bcbd22", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166066", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166066-LinearWiggleDisplay", "color": "#17becf", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166067", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166067-LinearWiggleDisplay", "color": "#17becf", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166068", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166068-LinearWiggleDisplay", "color": "#17becf", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166069", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166069-LinearWiggleDisplay", "color": "#17becf", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166070", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166070-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166071", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166071-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166072", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166072-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166073", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166073-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166074", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166074-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166075", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166075-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166076", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166076-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166077", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166077-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166078", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166078-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166079", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166079-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166080", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166080-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166081", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166081-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166082", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166082-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166083", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166083-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166084", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166084-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166085", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166085-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166086", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166086-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166087", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166087-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166088", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166088-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166089", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166089-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166090", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166090-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166091", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166091-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166092", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166092-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166093", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166093-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] } ], "displayedRegions": [ { "assemblyName": "GRCr8", "refName": "Chr4", "start": 0, "end": 1000000000 } ], "bpPerPx": 1090.9315, "offsetPx": 11288.767443235438 } ], "sessionTracks": [ { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166030", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166030", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166030", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166030.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166030-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166031", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166031", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166031", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166031.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166031-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166032", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166032", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166032", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166032.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166032-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166033", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166033", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166033", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166033.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166033-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166034", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166034", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166034", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166034.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166034-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166035", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166035", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166035", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166035.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166035-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166036", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166036", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166036", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166036.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166036-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166037", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166037", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166037", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166037.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_M_GSM9166037-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166038", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166038", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166038", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166038.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166038-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166039", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166039", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166039", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166039.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166039-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166040", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166040", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166040", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166040.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166040-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166041", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166041", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166041", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166041.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166041-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166042", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166042", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166042", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166042.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166042-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166043", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166043", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166043", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166043.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166043-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166044", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166044", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166044", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166044.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166044-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166045", "name": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166045", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166045", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166045.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm2_APOE_Sage_F_GSM9166045-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166046", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166046", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166046", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166046.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166046-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166047", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166047", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166047", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166047.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166047-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166048", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166048", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166048", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166048.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166048-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166049", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166049", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166049", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166049.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166049-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166050", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166050", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166050", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166050.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166050-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166051", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166051", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166051", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166051.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166051-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166052", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166052", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166052", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166052.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166052-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166053", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166053", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166053", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166053.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_M_GSM9166053-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166054", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166054", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166054", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166054.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166054-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#e377c2" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#e377c2" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166055", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166055", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166055", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166055.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166055-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#e377c2" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#e377c2" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166056", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166056", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166056", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166056.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166056-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#e377c2" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#e377c2" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166057", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166057", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166057", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166057.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166057-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#e377c2" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#e377c2" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166058", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166058", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166058", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166058.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166058-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166059", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166059", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166059", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166059.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166059-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166060", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166060", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166060", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166060.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166060-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166061", "name": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166061", "category": [ "RNA-Seq", "hippocampal_formation", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "hippocampal_formation", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166061", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166061.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_hippocampal_formation_SD-Apoetm1_APOE_Sage_F_GSM9166061-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166062", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166062", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166062", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166062.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166062-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166063", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166063", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166063", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166063.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166063-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166064", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166064", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166064", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166064.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166064-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166065", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166065", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166065", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166065.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166065-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166066", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166066", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166066", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166066.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166066-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#17becf" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#17becf" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166067", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166067", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166067", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166067.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166067-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#17becf" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#17becf" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166068", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166068", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166068", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166068.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166068-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#17becf" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#17becf" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166069", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166069", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166069", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166069.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_M_GSM9166069-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#17becf" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#17becf" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166070", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166070", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166070", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166070.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166070-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166071", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166071", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166071", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166071.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166071-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166072", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166072", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166072", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166072.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166072-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166073", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166073", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166073", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166073.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166073-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166074", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166074", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166074", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166074.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166074-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166075", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166075", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166075", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166075.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166075-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166076", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166076", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166076", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166076.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166076-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166077", "name": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166077", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm2_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm2_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=645244152", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166077", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166077.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm2_APOE_Sage_F_GSM9166077-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166078", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166078", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166078", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166078.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166078-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166079", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166079", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166079", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166079.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166079-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166080", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166080", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166080", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166080.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166080-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166081", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166081", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166081", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166081.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166081-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166082", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166082", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166082", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166082.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166082-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166083", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166083", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166083", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166083.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166083-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166084", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166084", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166084", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166084.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166084-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166085", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166085", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166085", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166085.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_M_GSM9166085-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166086", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166086", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166086", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166086.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166086-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166087", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166087", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166087", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166087.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166087-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166088", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166088", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166088", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166088.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166088-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166089", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166089", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;28.0 days phosphate buffered saline", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166089", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166089.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166089-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166090", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166090", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166090", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166090.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166090-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166091", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166091", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166091", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166091.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166091-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166092", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166092", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166092", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166092.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166092-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166093", "name": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166093", "category": [ "RNA-Seq", "cerebral_cortex", "SD-Apoetm1_APOE_Sage" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "91.0-98.0d;2.0 mg/kg/week 28.0 days doxorubicin", "Tissue": "cerebral_cortex", "Strain": "SD-Apoetm1_APOE_Sage", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=12902616", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE305230", "Project Title": "Transcriptomic changes upon doxorubicin treatment in the brain of ApoE3 and ApoE4 rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE305230", "Project Accession ID": "GSE305230", "Sample Accession ID": "GSM9166093", "PubMed ID": "PMID:41436539", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE305230/Genome-wide_read_coverage_BigWig_files/RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166093.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cerebral_cortex_SD-Apoetm1_APOE_Sage_F_GSM9166093-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] } ] } }