{ "session": { "name": "GSE249994_RNAseq_expression", "description": "Auto-generated session for GSE249994 on 2026-05-20T22:47:10", "views": [ { "id": "lgv1", "type": "LinearGenomeView", "tracks": [ { "id": "F-8qwRhumS", "type": "FeatureTrack", "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8", "minimized": false, "displays": [ { "id": "uZq89S4_XC", "type": "LinearBasicDisplay", "heightPreConfig": 152, "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8-LinearBasicDisplay" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968769", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968769-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968770", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968770-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968771", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968771-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968772", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968772-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968773", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968773-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968774", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968774-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968775", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968775-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968776", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968776-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968777", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968777-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968778", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968778-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968779", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968779-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968780", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968780-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968781", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968781-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968782", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968782-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968783", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968783-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968784", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968784-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968785", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968785-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968786", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968786-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968787", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968787-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968788", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968788-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968789", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968789-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968790", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968790-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968791", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968791-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968792", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968792-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968793", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968793-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968794", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968794-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968795", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968795-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968796", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968796-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] } ], "displayedRegions": [ { "assemblyName": "GRCr8", "refName": "Chr4", "start": 0, "end": 1000000000 } ], "bpPerPx": 1090.9315, "offsetPx": 11288.767443235438 } ], "sessionTracks": [ { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968769", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968769", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968769", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968769.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968769-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968770", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968770", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968770", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968770.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968770-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968771", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968771", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968771", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968771.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968771-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968772", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968772", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968772", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968772.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968772-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968773", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968773", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968773", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968773.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968773-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968774", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968774", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968774", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968774.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968774-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968775", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968775", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968775", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968775.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968775-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968776", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968776", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968776", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968776.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968776-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968777", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968777", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d;30.0 secs sciatic nerve crush", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968777", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968777.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968777-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968778", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968778", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d;30.0 secs sciatic nerve crush", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968778", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968778.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968778-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968779", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968779", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d;30.0 secs sciatic nerve crush", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968779", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968779.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968779-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968780", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968780", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d;30.0 secs sciatic nerve crush", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968780", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968780.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968780-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968781", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968781", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d;30.0 secs sciatic nerve crush", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968781", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968781.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968781-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968782", "name": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968782", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1A_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d;30.0 secs sciatic nerve crush", "Tissue": "striatum", "Strain": "SD-Tg_TOR1A_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154611", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968782", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968782.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1A_Tot_M_GSM7968782-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968783", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968783", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968783", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968783.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968783-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968784", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968784", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968784", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968784.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968784-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968785", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968785", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968785", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968785.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968785-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968786", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968786", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968786", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968786.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968786-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968787", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968787", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968787", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968787.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968787-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968788", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968788", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968788", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968788.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968788-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968789", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968789", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968789", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968789.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968789-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968790", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968790", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d; control condition", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968790", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968790.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968790-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968791", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968791", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d;30.0 secs sciatic nerve crush", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968791", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968791.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968791-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968792", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968792", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d;30.0 secs sciatic nerve crush", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968792", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968792.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968792-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968793", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968793", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d;30.0 secs sciatic nerve crush", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968793", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968793.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968793-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968794", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968794", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d;30.0 secs sciatic nerve crush", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968794", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968794.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968794-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968795", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968795", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d;30.0 secs sciatic nerve crush", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968795", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968795.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968795-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968796", "name": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968796", "category": [ "RNA-Seq", "striatum", "SD-Tg_TOR1ADYT1_Tot" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "154.0-168.0d;30.0 secs sciatic nerve crush", "Tissue": "striatum", "Strain": "SD-Tg_TOR1ADYT1_Tot", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=598154612", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE249994", "Project Title": "Examining differentially expressed genes and pathways within the striatum using a rodent model of DYT-TOR1A dystonia", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE249994", "Project Accession ID": "GSE249994", "Sample Accession ID": "GSM7968796", "PubMed ID": "PMID:38442845", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE249994/Genome-wide_read_coverage_BigWig_files/RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968796.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_striatum_SD-Tg_TOR1ADYT1_Tot_M_GSM7968796-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] } ] } }