{ "session": { "name": "GSE242155_RNAseq_expression", "description": "Auto-generated session for GSE242155 on 2026-03-27T18:36:42", "views": [ { "id": "lgv1", "type": "LinearGenomeView", "tracks": [ { "id": "F-8qwRhumS", "type": "FeatureTrack", "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8", "minimized": false, "displays": [ { "id": "uZq89S4_XC", "type": "LinearBasicDisplay", "heightPreConfig": 152, "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8-LinearBasicDisplay" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7749991", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749991-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7749992", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749992-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7749993", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749993-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7749994", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749994-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7749995", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749995-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7749996", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749996-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7749997", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749997-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7749998", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749998-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7749999", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749999-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750000", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750000-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750001", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750001-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750002", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750002-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750003", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750003-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750004", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750004-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750005", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750005-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750006", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750006-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750007", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750007-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750008", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750008-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750009", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750009-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750010", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750010-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750011", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750011-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750012", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750012-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750013", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750013-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750014", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750014-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750015", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750015-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750016", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750016-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750017", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750017-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750018", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750018-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750019", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750019-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750020", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750020-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750021", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750021-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750022", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750022-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750023", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750023-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750024", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750024-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750025", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750025-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750026", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750026-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750027", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750027-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750028", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750028-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750029", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750029-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750030", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750030-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750031", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750031-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750032", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750032-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750033", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750033-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750034", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750034-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750035", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750035-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750036", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750036-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750037", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750037-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lung_NHla_SD_M_GSM7750038", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750038-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] } ], "displayedRegions": [ { "assemblyName": "GRCr8", "refName": "Chr4", "start": 0, "end": 1000000000 } ], "bpPerPx": 1090.9315, "offsetPx": 11288.767443235438 } ], "sessionTracks": [ { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7749991", "name": "RNAseq_lung_NHla_SD_M_GSM7749991", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7749991", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7749991.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749991-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7749992", "name": "RNAseq_lung_NHla_SD_M_GSM7749992", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7749992", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7749992.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749992-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7749993", "name": "RNAseq_lung_NHla_SD_M_GSM7749993", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7749993", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7749993.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749993-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7749994", "name": "RNAseq_lung_NHla_SD_M_GSM7749994", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7749994", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7749994.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749994-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7749995", "name": "RNAseq_lung_NHla_SD_M_GSM7749995", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7749995", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7749995.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749995-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7749996", "name": "RNAseq_lung_NHla_SD_M_GSM7749996", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7749996", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7749996.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749996-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7749997", "name": "RNAseq_lung_NHla_SD_M_GSM7749997", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7749997", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7749997.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749997-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7749998", "name": "RNAseq_lung_NHla_SD_M_GSM7749998", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7749998", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7749998.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749998-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7749999", "name": "RNAseq_lung_NHla_SD_M_GSM7749999", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7749999", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7749999.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7749999-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750000", "name": "RNAseq_lung_NHla_SD_M_GSM7750000", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750000", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750000.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750000-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750001", "name": "RNAseq_lung_NHla_SD_M_GSM7750001", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750001", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750001.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750001-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750002", "name": "RNAseq_lung_NHla_SD_M_GSM7750002", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750002", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750002.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750002-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750003", "name": "RNAseq_lung_NHla_SD_M_GSM7750003", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750003", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750003.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750003-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750004", "name": "RNAseq_lung_NHla_SD_M_GSM7750004", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750004", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750004.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750004-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750005", "name": "RNAseq_lung_NHla_SD_M_GSM7750005", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750005", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750005.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750005-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750006", "name": "RNAseq_lung_NHla_SD_M_GSM7750006", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750006", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750006.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750006-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750007", "name": "RNAseq_lung_NHla_SD_M_GSM7750007", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750007", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750007.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750007-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750008", "name": "RNAseq_lung_NHla_SD_M_GSM7750008", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750008", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750008.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750008-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750009", "name": "RNAseq_lung_NHla_SD_M_GSM7750009", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750009", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750009.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750009-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750010", "name": "RNAseq_lung_NHla_SD_M_GSM7750010", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750010", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750010.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750010-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750011", "name": "RNAseq_lung_NHla_SD_M_GSM7750011", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750011", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750011.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750011-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750012", "name": "RNAseq_lung_NHla_SD_M_GSM7750012", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750012", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750012.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750012-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750013", "name": "RNAseq_lung_NHla_SD_M_GSM7750013", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750013", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750013.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750013-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750014", "name": "RNAseq_lung_NHla_SD_M_GSM7750014", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750014", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750014.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750014-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750015", "name": "RNAseq_lung_NHla_SD_M_GSM7750015", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750015", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750015.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750015-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750016", "name": "RNAseq_lung_NHla_SD_M_GSM7750016", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750016", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750016.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750016-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750017", "name": "RNAseq_lung_NHla_SD_M_GSM7750017", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750017", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750017.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750017-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750018", "name": "RNAseq_lung_NHla_SD_M_GSM7750018", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750018", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750018.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750018-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750019", "name": "RNAseq_lung_NHla_SD_M_GSM7750019", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750019", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750019.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750019-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750020", "name": "RNAseq_lung_NHla_SD_M_GSM7750020", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750020", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750020.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750020-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750021", "name": "RNAseq_lung_NHla_SD_M_GSM7750021", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750021", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750021.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750021-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750022", "name": "RNAseq_lung_NHla_SD_M_GSM7750022", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750022", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750022.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750022-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750023", "name": "RNAseq_lung_NHla_SD_M_GSM7750023", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750023", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750023.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750023-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750024", "name": "RNAseq_lung_NHla_SD_M_GSM7750024", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750024", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750024.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750024-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750025", "name": "RNAseq_lung_NHla_SD_M_GSM7750025", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750025", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750025.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750025-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750026", "name": "RNAseq_lung_NHla_SD_M_GSM7750026", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750026", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750026.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750026-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750027", "name": "RNAseq_lung_NHla_SD_M_GSM7750027", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750027", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750027.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750027-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750028", "name": "RNAseq_lung_NHla_SD_M_GSM7750028", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750028", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750028.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750028-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750029", "name": "RNAseq_lung_NHla_SD_M_GSM7750029", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750029", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750029.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750029-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750030", "name": "RNAseq_lung_NHla_SD_M_GSM7750030", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; filtered air", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750030", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750030.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750030-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750031", "name": "RNAseq_lung_NHla_SD_M_GSM7750031", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750031", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750031.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750031-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750032", "name": "RNAseq_lung_NHla_SD_M_GSM7750032", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750032", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750032.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750032-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750033", "name": "RNAseq_lung_NHla_SD_M_GSM7750033", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750033", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750033.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750033-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750034", "name": "RNAseq_lung_NHla_SD_M_GSM7750034", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750034", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750034.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750034-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750035", "name": "RNAseq_lung_NHla_SD_M_GSM7750035", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750035", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750035.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750035-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750036", "name": "RNAseq_lung_NHla_SD_M_GSM7750036", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750036", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750036.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750036-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750037", "name": "RNAseq_lung_NHla_SD_M_GSM7750037", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750037", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750037.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750037-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lung_NHla_SD_M_GSM7750038", "name": "RNAseq_lung_NHla_SD_M_GSM7750038", "category": [ "RNA-Seq", "lung", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 controlled air crystalline silica content;1.0 mg/m3 controlled air diesel exhaust particle content", "Tissue": "lung", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE242155", "Project Title": "Pulmonary effects of inhaled diesel exhaust and fracking sand particles in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE242155", "Project Accession ID": "GSE242155", "Sample Accession ID": "GSM7750038", "PubMed ID": "PMID:NA", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE242155/Genome-wide_read_coverage_BigWig_files/RNAseq_lung_NHla_SD_M_GSM7750038.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lung_NHla_SD_M_GSM7750038-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] } ] } }