Workflow: expression values from HPC RGD workflow (processed before workflow 2.1); computed sex, strand and library prep added by RGD attribute backfill 1.0 (2026-10-20) using the workflow 2.1 rules. Note: ComputedSex is called from sex-gene expression: R = (Xist TPM + 1) / (median TPM of Uty, Ddx3y, Kdm5d and Eif2s3y + 1); R >= 10 is called F, R <= 1 is called M, and other values, or samples where Xist and the Y-gene median are both below 1 TPM, are Undetermined. Females express Xist and males the Y-linked genes. Sry is reported but not used in the calculation. XYRatio (X:Y read coverage) is shown for reference only. Agreement compares ComputedSex with InputSex (submitted to GEO).
SampleID	InputSex	ComputedSex	XYRatio	Agreement	Xist	Uty	Sry	Ddx3y	Kdm5d	Eif2s3y	ComputedStrand	ComputedLibraryPrep	PctMRNA	PctIntronic	PctIntergenic	PctRibosomal	UniqPct	MultiPct	TooShortPct	NonPolyA_perM	LibraryPrepRule	LibraryPrepQC	LibraryPrepReason
GSM7220532	M	M	NA	Agree	0.06	2.85	0.00	21.46	4.08	32.52	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.850779	0.069978	0.068034	0.011209	85.83	8.97	4.30	4035	LP2 (2026-09-30)	PASS	NonPolyA_perM 4035 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM7220533	M	M	NA	Agree	0.06	3.71	0.00	24.86	4.27	32.15	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.829067	0.086863	0.068397	0.015673	85.85	9.42	3.91	4807	LP2 (2026-09-30)	PASS	NonPolyA_perM 4807 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM7220534	M	M	NA	Agree	0.02	3.61	0.00	21.94	3.97	29.31	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.855005	0.069372	0.064338	0.011285	86.68	8.78	3.74	4886	LP2 (2026-09-30)	PASS	NonPolyA_perM 4886 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM7220535	M	M	NA	Agree	0.03	3.30	0.00	24.28	3.28	28.86	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.834078	0.087997	0.066931	0.010994	86.62	8.93	3.69	4920	LP2 (2026-09-30)	PASS	NonPolyA_perM 4920 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not