{ "session": { "name": "GSE197466_RNAseq_expression", "description": "Auto-generated session for GSE197466 on 2026-04-15T11:51:04", "views": [ { "id": "lgv1", "type": "LinearGenomeView", "tracks": [ { "id": "F-8qwRhumS", "type": "FeatureTrack", "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8", "minimized": false, "displays": [ { "id": "uZq89S4_XC", "type": "LinearBasicDisplay", "heightPreConfig": 152, "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8-LinearBasicDisplay" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918022", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918022-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918023", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918023-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918024", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918024-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918025", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918025-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918026", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918026-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918027", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918027-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918028", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918028-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918029", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918029-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918030", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918030-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918031", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918031-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918032", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918032-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918033", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918033-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918034", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918034-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918035", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918035-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918036", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918036-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918037", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918037-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918038", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918038-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918039", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918039-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918040", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918040-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918041", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918041-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918042", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918042-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918043", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918043-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918044", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918044-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918045", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918045-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918046", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918046-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918047", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918047-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918048", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918048-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918049", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918049-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918050", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918050-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918051", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918051-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918052", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918052-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918053", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918053-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918054", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918054-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918055", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918055-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918056", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918056-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_blood_SD_M_GSM5918057", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918057-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] } ], "displayedRegions": [ { "assemblyName": "GRCr8", "refName": "Chr4", "start": 0, "end": 1000000000 } ], "bpPerPx": 1090.9315, "offsetPx": 11288.767443235438 } ], "sessionTracks": [ { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918022", "name": "RNAseq_blood_SD_M_GSM5918022", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;200.0 ul vehicle control condition;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918022", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918022.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918022-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918023", "name": "RNAseq_blood_SD_M_GSM5918023", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;200.0 ul vehicle control condition;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918023", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918023.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918023-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918024", "name": "RNAseq_blood_SD_M_GSM5918024", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;200.0 ul vehicle control condition;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918024", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918024.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918024-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918025", "name": "RNAseq_blood_SD_M_GSM5918025", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;200.0 ul vehicle control condition;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918025", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918025.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918025-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918026", "name": "RNAseq_blood_SD_M_GSM5918026", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;200.0 ul vehicle control condition;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918026", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918026.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918026-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918027", "name": "RNAseq_blood_SD_M_GSM5918027", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;200.0 ul vehicle control condition;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918027", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918027.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918027-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918028", "name": "RNAseq_blood_SD_M_GSM5918028", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918028", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918028.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918028-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918029", "name": "RNAseq_blood_SD_M_GSM5918029", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918029", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918029.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918029-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918030", "name": "RNAseq_blood_SD_M_GSM5918030", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918030", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918030.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918030-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918031", "name": "RNAseq_blood_SD_M_GSM5918031", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918031", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918031.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918031-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918032", "name": "RNAseq_blood_SD_M_GSM5918032", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918032", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918032.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918032-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918033", "name": "RNAseq_blood_SD_M_GSM5918033", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918033", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918033.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918033-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918034", "name": "RNAseq_blood_SD_M_GSM5918034", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918034", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918034.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918034-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918035", "name": "RNAseq_blood_SD_M_GSM5918035", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918035", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918035.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918035-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918036", "name": "RNAseq_blood_SD_M_GSM5918036", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;200.0 ul vehicle control condition;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918036", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918036.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918036-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918037", "name": "RNAseq_blood_SD_M_GSM5918037", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;200.0 ul vehicle control condition;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918037", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918037.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918037-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918038", "name": "RNAseq_blood_SD_M_GSM5918038", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;200.0 ul vehicle control condition;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918038", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918038.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918038-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918039", "name": "RNAseq_blood_SD_M_GSM5918039", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;200.0 ul vehicle control condition;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918039", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918039.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918039-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918040", "name": "RNAseq_blood_SD_M_GSM5918040", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;200.0 ul vehicle control condition;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918040", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918040.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918040-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918041", "name": "RNAseq_blood_SD_M_GSM5918041", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;200.0 ul vehicle control condition;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918041", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918041.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918041-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918042", "name": "RNAseq_blood_SD_M_GSM5918042", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918042", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918042.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918042-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918043", "name": "RNAseq_blood_SD_M_GSM5918043", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918043", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918043.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918043-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918044", "name": "RNAseq_blood_SD_M_GSM5918044", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918044", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918044.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918044-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918045", "name": "RNAseq_blood_SD_M_GSM5918045", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918045", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918045.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918045-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918046", "name": "RNAseq_blood_SD_M_GSM5918046", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918046", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918046.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918046-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918047", "name": "RNAseq_blood_SD_M_GSM5918047", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918047", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918047.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918047-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918048", "name": "RNAseq_blood_SD_M_GSM5918048", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918048", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918048.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918048-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918049", "name": "RNAseq_blood_SD_M_GSM5918049", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918049", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918049.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918049-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918050", "name": "RNAseq_blood_SD_M_GSM5918050", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918050", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918050.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918050-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918051", "name": "RNAseq_blood_SD_M_GSM5918051", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918051", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918051.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918051-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918052", "name": "RNAseq_blood_SD_M_GSM5918052", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918052", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918052.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918052-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918053", "name": "RNAseq_blood_SD_M_GSM5918053", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;1.1 MHz 5.0 mins splenic ultrasound neuromodulation", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918053", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918053.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918053-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918054", "name": "RNAseq_blood_SD_M_GSM5918054", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918054", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918054.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918054-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918055", "name": "RNAseq_blood_SD_M_GSM5918055", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918055", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918055.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918055-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918056", "name": "RNAseq_blood_SD_M_GSM5918056", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918056", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918056.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918056-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_blood_SD_M_GSM5918057", "name": "RNAseq_blood_SD_M_GSM5918057", "category": [ "RNA-Seq", "blood", "SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "69.0-83.0d;3.0 x 10E5 CFU Streptococcus pneumoniae 262;0.0 MHz 5.0 mins splenic ultrasound neuromodulation;0.0 MHz 5.0 mins control condition", "Tissue": "blood", "Strain": "SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=70508", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE197466", "Project Title": "Cholinergic Anti-inflammatory Pathway (CAP) Activation in a Model of Acute Lung Infection", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE197466", "Project Accession ID": "GSE197466", "Sample Accession ID": "GSM5918057", "PubMed ID": "PMID:35784337", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE197466/Genome-wide_read_coverage_BigWig_files/RNAseq_blood_SD_M_GSM5918057.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_blood_SD_M_GSM5918057-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] } ] } }