{ "session": { "name": "GSE155610_RNAseq_expression", "description": "Auto-generated session for GSE155610 on 2026-04-16T19:27:55", "views": [ { "id": "lgv1", "type": "LinearGenomeView", "tracks": [ { "id": "F-8qwRhumS", "type": "FeatureTrack", "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8", "minimized": false, "displays": [ { "id": "uZq89S4_XC", "type": "LinearBasicDisplay", "heightPreConfig": 152, "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8-LinearBasicDisplay" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_white_matter_LE_outbred_F_GSM4708524", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708524-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_white_matter_LE_outbred_F_GSM4708525", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708525-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708526", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708526-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708527", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708527-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708528", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708528-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_white_matter_LE_outbred_F_GSM4708529", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708529-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_white_matter_LE_outbred_F_GSM4708530", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708530-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708531", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708531-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708532", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708532-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708533", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708533-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_white_matter_LE_outbred_F_GSM4708534", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708534-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_white_matter_LE_outbred_F_GSM4708535", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708535-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708536", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708536-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708537", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708537-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708538", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708538-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_white_matter_LE_outbred_F_GSM4708539", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708539-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_white_matter_LE_outbred_F_GSM4708540", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708540-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708541", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708541-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708542", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708542-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708543", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708543-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] } ], "displayedRegions": [ { "assemblyName": "GRCr8", "refName": "Chr4", "start": 0, "end": 1000000000 } ], "bpPerPx": 1090.9315, "offsetPx": 11288.767443235438 } ], "sessionTracks": [ { "type": "QuantitativeTrack", "trackId": "RNAseq_white_matter_LE_outbred_F_GSM4708524", "name": "RNAseq_white_matter_LE_outbred_F_GSM4708524", "category": [ "RNA-Seq", "white_matter", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;0.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "white_matter", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708524", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_white_matter_LE_outbred_F_GSM4708524.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708524-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_white_matter_LE_outbred_F_GSM4708525", "name": "RNAseq_white_matter_LE_outbred_F_GSM4708525", "category": [ "RNA-Seq", "white_matter", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;0.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "white_matter", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708525", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_white_matter_LE_outbred_F_GSM4708525.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708525-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708526", "name": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708526", "category": [ "RNA-Seq", "cervical_subsegment_of_spinal_cord", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;0.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "cervical_subsegment_of_spinal_cord", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708526", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708526.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708526-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708527", "name": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708527", "category": [ "RNA-Seq", "C4_segment_of_cervical_spinal_cord", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;0.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "C4_segment_of_cervical_spinal_cord", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708527", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708527.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708527-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708528", "name": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708528", "category": [ "RNA-Seq", "cervical_subsegment_of_spinal_cord", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;0.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "cervical_subsegment_of_spinal_cord", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708528", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708528.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708528-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_white_matter_LE_outbred_F_GSM4708529", "name": "RNAseq_white_matter_LE_outbred_F_GSM4708529", "category": [ "RNA-Seq", "white_matter", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;0.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "white_matter", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708529", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_white_matter_LE_outbred_F_GSM4708529.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708529-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_white_matter_LE_outbred_F_GSM4708530", "name": "RNAseq_white_matter_LE_outbred_F_GSM4708530", "category": [ "RNA-Seq", "white_matter", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;0.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "white_matter", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708530", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_white_matter_LE_outbred_F_GSM4708530.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708530-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708531", "name": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708531", "category": [ "RNA-Seq", "cervical_subsegment_of_spinal_cord", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;0.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "cervical_subsegment_of_spinal_cord", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708531", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708531.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708531-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708532", "name": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708532", "category": [ "RNA-Seq", "C4_segment_of_cervical_spinal_cord", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;0.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "C4_segment_of_cervical_spinal_cord", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708532", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708532.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708532-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708533", "name": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708533", "category": [ "RNA-Seq", "cervical_subsegment_of_spinal_cord", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;0.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "cervical_subsegment_of_spinal_cord", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708533", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708533.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708533-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_white_matter_LE_outbred_F_GSM4708534", "name": "RNAseq_white_matter_LE_outbred_F_GSM4708534", "category": [ "RNA-Seq", "white_matter", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;50.0 uA - 250.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "white_matter", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708534", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_white_matter_LE_outbred_F_GSM4708534.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708534-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_white_matter_LE_outbred_F_GSM4708535", "name": "RNAseq_white_matter_LE_outbred_F_GSM4708535", "category": [ "RNA-Seq", "white_matter", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;50.0 uA - 250.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "white_matter", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708535", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_white_matter_LE_outbred_F_GSM4708535.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708535-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708536", "name": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708536", "category": [ "RNA-Seq", "cervical_subsegment_of_spinal_cord", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;50.0 uA - 250.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "cervical_subsegment_of_spinal_cord", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708536", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708536.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708536-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708537", "name": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708537", "category": [ "RNA-Seq", "C4_segment_of_cervical_spinal_cord", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;50.0 uA - 250.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "C4_segment_of_cervical_spinal_cord", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708537", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708537.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708537-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708538", "name": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708538", "category": [ "RNA-Seq", "cervical_subsegment_of_spinal_cord", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;50.0 uA - 250.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "cervical_subsegment_of_spinal_cord", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708538", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708538.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708538-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_white_matter_LE_outbred_F_GSM4708539", "name": "RNAseq_white_matter_LE_outbred_F_GSM4708539", "category": [ "RNA-Seq", "white_matter", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;50.0 uA - 250.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "white_matter", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708539", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_white_matter_LE_outbred_F_GSM4708539.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708539-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_white_matter_LE_outbred_F_GSM4708540", "name": "RNAseq_white_matter_LE_outbred_F_GSM4708540", "category": [ "RNA-Seq", "white_matter", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;50.0 uA - 250.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "white_matter", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708540", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_white_matter_LE_outbred_F_GSM4708540.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_white_matter_LE_outbred_F_GSM4708540-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708541", "name": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708541", "category": [ "RNA-Seq", "cervical_subsegment_of_spinal_cord", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;50.0 uA - 250.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "cervical_subsegment_of_spinal_cord", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708541", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708541.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708541-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708542", "name": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708542", "category": [ "RNA-Seq", "C4_segment_of_cervical_spinal_cord", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;50.0 uA - 250.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "C4_segment_of_cervical_spinal_cord", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708542", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708542.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_C4_segment_of_cervical_spinal_cord_LE_outbred_F_GSM4708542-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708543", "name": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708543", "category": [ "RNA-Seq", "cervical_subsegment_of_spinal_cord", "LE_outbred" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "180.0-240.0d; experimental spinal cord contusion;25.0 mg/kg 14.0 days controlled enrofloxacin content drinking water;0.2 mg/kg dexamethasone;50.0 uA - 250.0 uA 7.0 days motor cortex stimulation via implanted electrode array", "Tissue": "cervical_subsegment_of_spinal_cord", "Strain": "LE_outbred", "RGD Strain Report": "NA", "Sex": "F", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE155610", "Project Title": "Transcriptome of Subcortical White Matter and Spinal Cord After Spinal Injury and Cortical Stimulation", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE155610", "Project Accession ID": "GSE155610", "Sample Accession ID": "GSM4708543", "PubMed ID": "PMID:34267212", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE155610/Genome-wide_read_coverage_BigWig_files/RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708543.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_cervical_subsegment_of_spinal_cord_LE_outbred_F_GSM4708543-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] } ] } }