{ "session": { "name": "GSE148255_RNAseq_expression", "description": "Auto-generated session for GSE148255 on 2026-04-16T23:02:19", "views": [ { "id": "lgv1", "type": "LinearGenomeView", "tracks": [ { "id": "F-8qwRhumS", "type": "FeatureTrack", "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8", "minimized": false, "displays": [ { "id": "uZq89S4_XC", "type": "LinearBasicDisplay", "heightPreConfig": 152, "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8-LinearBasicDisplay" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458815", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458815-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458816", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458816-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458817", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458817-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458818", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458818-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458819", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458819-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458820", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458820-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458821", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458821-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458822", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458822-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458823", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458823-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458824", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458824-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458825", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458825-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458826", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458826-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458827", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458827-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458828", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458828-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458829", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458829-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458830", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458830-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458831", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458831-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458832", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458832-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458833", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458833-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458834", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458834-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458835", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458835-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458836", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458836-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458837", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458837-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458838", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458838-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458839", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458839-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458840", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458840-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458841", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458841-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458842", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458842-LinearWiggleDisplay", "color": "#8c564b", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458843", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458843-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458844", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458844-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458845", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458845-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458846", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458846-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458847", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458847-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458848", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458848-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458849", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458849-LinearWiggleDisplay", "color": "#e377c2", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458850", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458850-LinearWiggleDisplay", "color": "#e377c2", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458851", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458851-LinearWiggleDisplay", "color": "#e377c2", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458852", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458852-LinearWiggleDisplay", "color": "#e377c2", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458853", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458853-LinearWiggleDisplay", "color": "#e377c2", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458854", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458854-LinearWiggleDisplay", "color": "#e377c2", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458855", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458855-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458856", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458856-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458857", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458857-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458858", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458858-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458859", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458859-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458860", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458860-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458861", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458861-LinearWiggleDisplay", "color": "#7f7f7f", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458862", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458862-LinearWiggleDisplay", "color": "#7f7f7f", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458863", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458863-LinearWiggleDisplay", "color": "#7f7f7f", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458864", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458864-LinearWiggleDisplay", "color": "#7f7f7f", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458865", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458865-LinearWiggleDisplay", "color": "#7f7f7f", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458866", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458866-LinearWiggleDisplay", "color": "#7f7f7f", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458867", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458867-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458868", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458868-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458869", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458869-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458870", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458870-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458871", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458871-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458872", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458872-LinearWiggleDisplay", "color": "#9467bd", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458873", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458873-LinearWiggleDisplay", "color": "#bcbd22", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458874", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458874-LinearWiggleDisplay", "color": "#bcbd22", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458875", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458875-LinearWiggleDisplay", "color": "#bcbd22", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458876", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458876-LinearWiggleDisplay", "color": "#bcbd22", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458877", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458877-LinearWiggleDisplay", "color": "#bcbd22", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458878", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458878-LinearWiggleDisplay", "color": "#bcbd22", "defaultRendering": "xyplot" } ] } ], "displayedRegions": [ { "assemblyName": "GRCr8", "refName": "Chr4", "start": 0, "end": 1000000000 } ], "bpPerPx": 1090.9315, "offsetPx": 11288.767443235438 } ], "sessionTracks": [ { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458815", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458815", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458815", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458815.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458815-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458816", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458816", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458816", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458816.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458816-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458817", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458817", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458817", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458817.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458817-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458818", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458818", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458818", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458818.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458818-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458819", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458819", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458819", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458819.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458819-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458820", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458820", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458820", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458820.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458820-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458821", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458821", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458821", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458821.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458821-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458822", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458822", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458822", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458822.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458822-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458823", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458823", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458823", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458823.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458823-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458824", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458824", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458824", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458824.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458824-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458825", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458825", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458825", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458825.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458825-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458826", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458826", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458826", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458826.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458826-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458827", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458827", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458827", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458827.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458827-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458828", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458828", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458828", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458828.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458828-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458829", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458829", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458829", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458829.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458829-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458830", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458830", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458830", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458830.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458830-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458831", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458831", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458831", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458831.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458831-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458832", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458832", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458832", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458832.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458832-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458833", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458833", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458833", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458833.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458833-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458834", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458834", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458834", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458834.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458834-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458835", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458835", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458835", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458835.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458835-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458836", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458836", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458836", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458836.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458836-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458837", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458837", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458837", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458837.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458837-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458838", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458838", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458838", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458838.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458838-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458839", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458839", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458839", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458839.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458839-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458840", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458840", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458840", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458840.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458840-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458841", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458841", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458841", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458841.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458841-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458842", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458842", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;10.0 mg/m3 4.0 days controlled air crystalline silica content;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458842", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458842.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458842-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#8c564b" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#8c564b" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458843", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458843", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458843", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458843.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458843-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458844", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458844", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458844", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458844.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458844-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458845", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458845", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458845", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458845.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458845-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458846", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458846", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458846", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458846.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458846-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458847", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458847", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458847", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458847.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458847-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458848", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458848", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458848", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458848.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458848-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458849", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458849", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air;30.0 mg/m3 4.0 days controlled air crystalline silica content", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458849", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458849.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458849-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#e377c2" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#e377c2" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458850", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458850", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air;30.0 mg/m3 4.0 days controlled air crystalline silica content", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458850", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458850.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458850-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#e377c2" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#e377c2" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458851", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458851", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air;30.0 mg/m3 4.0 days controlled air crystalline silica content", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458851", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458851.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458851-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#e377c2" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#e377c2" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458852", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458852", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air;30.0 mg/m3 4.0 days controlled air crystalline silica content", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458852", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458852.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458852-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#e377c2" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#e377c2" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458853", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458853", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air;30.0 mg/m3 4.0 days controlled air crystalline silica content", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458853", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458853.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458853-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#e377c2" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#e377c2" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458854", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458854", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;1.0 days ambient air;30.0 mg/m3 4.0 days controlled air crystalline silica content", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458854", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458854.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458854-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#e377c2" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#e377c2" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458855", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458855", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458855", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458855.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458855-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458856", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458856", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458856", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458856.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458856-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458857", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458857", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458857", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458857.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458857-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458858", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458858", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458858", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458858.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458858-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458859", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458859", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458859", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458859.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458859-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458860", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458860", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458860", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458860.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458860-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458861", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458861", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 4.0 days controlled air crystalline silica content;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458861", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458861.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458861-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458862", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458862", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 4.0 days controlled air crystalline silica content;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458862", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458862.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458862-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458863", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458863", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 4.0 days controlled air crystalline silica content;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458863", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458863.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458863-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458864", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458864", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 4.0 days controlled air crystalline silica content;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458864", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458864.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458864-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458865", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458865", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 4.0 days controlled air crystalline silica content;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458865", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458865.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458865-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458866", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458866", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 4.0 days controlled air crystalline silica content;7.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458866", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458866.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458866-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#7f7f7f" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458867", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458867", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458867", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458867.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458867-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458868", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458868", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458868", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458868.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458868-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458869", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458869", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458869", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458869.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458869-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458870", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458870", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458870", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458870.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458870-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458871", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458871", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458871", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458871.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458871-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458872", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458872", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458872", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458872.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458872-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#9467bd" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#9467bd" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458873", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458873", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 4.0 days controlled air crystalline silica content;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458873", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458873.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458873-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458874", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458874", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 4.0 days controlled air crystalline silica content;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458874", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458874.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458874-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458875", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458875", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 4.0 days controlled air crystalline silica content;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458875", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458875.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458875-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458876", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458876", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 4.0 days controlled air crystalline silica content;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458876", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458876.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458876-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458877", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458877", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 4.0 days controlled air crystalline silica content;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458877", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458877.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458877-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458878", "name": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458878", "category": [ "RNA-Seq", "right_lung_lobe", "NHla_SD" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult;30.0 mg/m3 4.0 days controlled air crystalline silica content;27.0 days ambient air", "Tissue": "right_lung_lobe", "Strain": "NHla_SD", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=25824850", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE148255", "Project Title": "Biological effects of inhaled hydraulic fracturing sand dust in rats", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE148255", "Project Accession ID": "GSE148255", "Sample Accession ID": "GSM4458878", "PubMed ID": "PMID:33065154", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE148255/Genome-wide_read_coverage_BigWig_files/RNAseq_right_lung_lobe_NHla_SD_M_GSM4458878.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_right_lung_lobe_NHla_SD_M_GSM4458878-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#bcbd22" } }, "defaultRendering": "xyplot" } ] } ] } }