# RGD-PIPELINE: ftp-file-extracts # MODULE: orthologs-version-2020-01-15 # GENERATED-ON: 2026/10/03 # RGD Ortholog FTP file # From: RGD # URL: http://rgd.mcw.edu # Contact: RGD.Data@mcw.edu # ### As of Dec 19 2011 v. 2.0.1: no data changes; improved internal QC. ### As of Feb 11 2013 v. 2.1.0: added column HUMAN_ORTHOLOG_HGNC_ID as the last column in the file ### As of Feb 4 2015 v. 2.1.1: updated description in header # # Format: # Comment lines begin with '#' # Tab delimited fields, one line per rat gene. # Fields in order: # 1. RAT_GENE_SYMBOL # 2. RAT_GENE_RGD_ID # 3. RAT_GENE_NCBI_GENE_ID # 4. HUMAN_ORTHOLOG_SYMBOL - human ortholog(s) to rat gene # 5. HUMAN_ORTHOLOG_RGD_ID # 6. HUMAN_ORTHOLOG_NCBI_GENE_ID # 7. HUMAN_ORTHOLOG_SOURCE - RGD or HGNC # 8. MOUSE_ORTHOLOG_SYMBOL - mouse ortholog(s) to rat gene # 9. MOUSE_ORTHOLOG_RGD_ID #10. MOUSE_ORTHOLOG_NCBI_GENE_ID #11. MOUSE_ORTHOLOG_MGI_ID #12. MOUSE_ORTHOLOG_SOURCE - RGD or MGI #13. HUMAN_ORTHOLOG_HGNC_ID # # Most orthologs listed will be one-to-one-to-one across all three species. # Where multiple human or mouse homologs are present in RGD the human and mouse # fields will contain multiple entries separated by '|'. # # There may not be a curated ortholog for human or mouse in which case the fields # for the respective species will be blank # # Multiple orthologs may be redundant when assigned by both RGD and MGI. These will # be resolved over time. # # SOURCE fields will be either 'RGD', for orthologs manually created by RGD curators, # or 'HGNC' for ortholog data derived from the HGNC Comparison of Orthology Predictions (HCOP) data compiled by: # HUGO Gene Nomenclature Committee, European Bioinformatics Institute (EMBL-EBI) # Wellcome Trust Genome Campus, Hinxton, Cambridge, UK # URL: http://www.genenames.org/ # # Reference for HGNC and HCOP: # Gray KA, Yates B, Seal RL, Wright MW, Bruford EA. # Genenames.org: the HGNC resources in 2015. # Nucleic Acids Res. 2015 Jan 28;43(Database issue):D1079-85. # PMID: 25361968, doi: 10.1093/nar/gku1071. # RAT_GENE_SYMBOL RAT_GENE_RGD_ID RAT_GENE_NCBI_GENE_ID HUMAN_ORTHOLOG_SYMBOL HUMAN_ORTHOLOG_RGD HUMAN_ORTHOLOG_NCBI_GENE_ID HUMAN_ORTHOLOG_SOURCE MOUSE_ORTHOLOG_SYMBOL MOUSE_ORTHOLOG_RGD MOUSE_ORTHOLOG_NCBI_GENE_ID MOUSE_ORTHOLOG_MGI MOUSE_ORTHOLOG_SOURCE HUMAN_ORTHOLOG_HGNC_ID 2610318N02Rikl 1308065 287935 AP000553.5 16570462 107985532 Ortholog 2610318N02Rik 1317621 70458 MGI:1917708 Transitive Ortholog Pipeline 4933405O20Rikl 1642415 100125384 AC099730.1 16553205 100631258 Ortholog 4933405O20Rik 1617305 243996 MGI:2142174 Transitive Ortholog Pipeline Adgrd2 402289764 134486217 ADGRD2 1350453 347088 Ortholog Adgrd2-ps 2311269 674251 MGI:2685845 Transitive Ortholog Pipeline HGNC:18651 Angptl5 737348918 148003937 ANGPTL5 1351491 253935 Ortholog Gm19324 5142092 100502693 MGI:5011509 Transitive Ortholog Pipeline HGNC:19705 Bend2 41287312 120099333 BEND2 1350095 139105 Ortholog Bend2 12436784 108168453 MGI:3705232 Transitive Ortholog Pipeline HGNC:28509 Blacat1 402419174 134481496 BLACAT1 7245155 101669762 Ortholog Blacat1 9672269 100505034 MGI:5588854 Transitive Ortholog Pipeline HGNC:48597 C11h3orf85 402368338 134480925 C3orf85 12907514 401081 Ortholog Gm5485 1622669 433023 MGI:3647875 Transitive Ortholog Pipeline HGNC:53432 C14h22orf31 402046207 134481692 C22orf31 1604374 25770 Ortholog Gm30172 9672302 102631980 MGI:5589331 Transitive Ortholog Pipeline HGNC:26931 C7H8orf90 737361244 148004842 C8orf90 150429681 122455339 Ortholog Gm6569 1613847 102634429 MGI:3647277 Transitive Ortholog Pipeline HGNC:56305 Ccdc201 737180308 148001440 CCDC201 14394821 114515518 Ortholog Ccdc201 2293294 100041347 MGI:3650614 Transitive Ortholog Pipeline HGNC:54081 Cdhr18 1565725 289926 CDHR18P 38652534 100130345 Ortholog Cdhr18 1615657 238939 MGI:2685127 Transitive Ortholog Pipeline HGNC:53742 Chd9nb 402440348 134483616 CHD9NB 16568284 105371267 Ortholog Gm19935 5139096 100503868 MGI:5012120 Transitive Ortholog Pipeline HGNC:53436 Ctxnd2 736899062 147996414 CTXND2 12910920 100996521 Ortholog Ctxnd2 1613626 67654 MGI:1914904 Transitive Ortholog Pipeline HGNC:53440 Dusp13a 163748611 128932650 DUSP13A 158012654 128854680 Ortholog Dusp13a 163705727 128932648 MGI:7470874 Transitive Ortholog Pipeline HGNC:56772 Fate1 737269069 147998402 FATE1 1353364 89885 Ortholog Fate1 1614263 77905 MGI:1925155 Transitive Ortholog Pipeline HGNC:24683 Gvqw3 736863710 147996895 GVQW3 13440401 100506127 Ortholog Gm57488 39129050 108167485 MGI:7511940 Transitive Ortholog Pipeline HGNC:51239 Hapstr2 1560171 367949 HAPSTR2 38668552 389895 Ortholog Hapstr2 1622865 279618 MGI:2685561 Transitive Ortholog Pipeline HGNC:55138 Iqcf3 1565277 501050 IQCF3 1353537 401067 Ortholog Iqcf3 1619171 68265 MGI:1915515 Transitive Ortholog Pipeline HGNC:31816 Lbhd1 737525443 148007859 LBHD1 1604294 79081 Ortholog Lbhd1 9675563 102308570 MGI:5516029 Transitive Ortholog Pipeline HGNC:28351 Lce1m 1588875 688413 LCE5A 1352803 254910 Ortholog Lce1m 1614383 66203 MGI:1913453 Transitive Ortholog Pipeline HGNC:16614 Lelp1 736913604 147996371 LELP1 1604741 149018 Ortholog Lelp1 1611912 69332 MGI:1916582 Transitive Ortholog Pipeline HGNC:32046 LOC102548041 7565604 102548041 LOC105371153 38630812 105371153 Ortholog 4933440M02Rik 5685468 71208 MGI:1918458 Transitive Ortholog Pipeline LOC134479581 402348346 134479581 LOC122455340 150429682 122455340 Ortholog Gm9918 11082574 432988 MGI:3646315 Transitive Ortholog Pipeline LOC134480818 402108151 134480818 LOC122526780 150429716 122526780 Ortholog Gm57849 150429728 122526781 MGI:7512645 Transitive Ortholog Pipeline LOC139440229 597805930 139440229 LASP1NB 6893228 100505576 Ortholog B230217C12Rik 1620025 68127 MGI:1915377 Transitive Ortholog Pipeline HGNC:44353 Misfa 6491878 100911574 MISFA 6766625 100506540 Ortholog Misfa 1613816 629141 MGI:3642801 Transitive Ortholog Pipeline HGNC:44122 Muc12 40984024 120095955 MUC12 1347863 10071 Ortholog Muc12 9661399 102633301 MGI:5590319 RGD HGNC:7510 Myocos 737199662 148001729 MYOCOS 13208337 110806290 Ortholog Myocos 1624519 100038657 MGI:3642786 Transitive Ortholog Pipeline HGNC:53429 Nbdy 402460988 134484180 NBDY 8662134 550643 Ortholog Nbdy 1614330 70123 MGI:1917373 Transitive Ortholog Pipeline HGNC:50713 Nhlrc4 737383010 148002792 NHLRC4 1602637 283948 Ortholog Nhlrc4 1614653 621239 MGI:3687200 Transitive Ortholog Pipeline HGNC:26700 Pabpc1l2b 402146755 134484067 PABPC1L2B 1642212 645974 Ortholog Pabpc1l2b 1622425 668382 MGI:3644774 Transitive Ortholog Pipeline HGNC:31852 Pet117 402087899 134486458 PET117 5688594 100303755 Ortholog Pet117 5683850 100048644 MGI:5295678 Transitive Ortholog Pipeline HGNC:40045 Pmis2 6487791 100912333 PMIS2 13439628 111216276 Ortholog Pmis2 2311160 74927 MGI:1922177 Transitive Ortholog Pipeline HGNC:53649 Rnf228 11455030 108351956 RNF228 150340634 122319436 Ortholog Rnf228 2308747 100039210 MGI:3780270 Transitive Ortholog Pipeline HGNC:55809 Saxo3 402122545 134483105 SAXO3 16565023 101059948 Ortholog Saxo3 151665717 100040019 MGI:7482583 Transitive Ortholog Pipeline HGNC:56771 Sco2 407445975 137201493 SCO2 1347479 9997 Ortholog Sco2 2302344 100126824 MGI:3818630 Transitive Ortholog Pipeline HGNC:10604 Scpppq1 2323137 100359907 SCPPPQ1 38624342 105377321 Ortholog Scpppq1 5144823 100271704 MGI:4937294 Transitive Ortholog Pipeline HGNC:56851 Smim10l2a 9296500 103694491 SMIM10L2A 1605492 399668 Ortholog Smim10l2a 1620470 320237 MGI:2443645 Transitive Ortholog Pipeline HGNC:34499 Smim10l3 402395049 134481267 SMIM10L3 150429726 122526779 Ortholog Smim10l3 150429727 122526778 MGI:7596158 Transitive Ortholog Pipeline HGNC:56768 Smim36 150341045 134480635 SMIM36 38625759 101927367 Ortholog Smim36 127338468 121811722 MGI:5804831 Transitive Ortholog Pipeline HGNC:53654 Smim39 402135253 134480355 SMIM39 15036975 113523639 Ortholog Smim39 127338467 121811709 MGI:6848416 Transitive Ortholog Pipeline HGNC:54076 Tmem217b 402399625 134478813 TMEM217B 127285489 121725057 Ortholog Tmem217b 9660613 102640495 MGI:4937291 Transitive Ortholog Pipeline HGNC:55922 Tmem276 2318728 100362155 TMEM276 151660487 84773 Ortholog Tmem276 152995351 125480935 MGI:7510162 Transitive Ortholog Pipeline HGNC:56235 Trim75-ps1 1565534 502072 TRIM75 1602800 391714 Ortholog Trim75 1619692 333307 MGI:2685640 Transitive Ortholog Pipeline HGNC:32686 Tunar 41061531 120103614 TUNAR 6484644 100507043 Ortholog Tunar 1608813 69952 MGI:1917202 Transitive Ortholog Pipeline HGNC:44088 Znf892 402443982 134486435 ZNF892 38617539 344065 Ortholog Gm14229 10001840 115489427 MGI:3651930 Transitive Ortholog Pipeline HGNC:38707 Zscan29-ps1 41187367 120101640 ZSCAN29 1605867 146050 Ortholog Zscan29 1619918 99334 MGI:2139317 Transitive Ortholog Pipeline HGNC:26673