# RGD-PIPELINE: ftp-file-extracts
# MODULE: orthologs-version-2020-01-15
# GENERATED-ON: 2024/03/22
# RGD Ortholog FTP file
# From: RGD
# URL: http://rgd.mcw.edu
# Contact: RGD.Data@mcw.edu
#
### As of Dec 19 2011 v. 2.0.1: no data changes; improved internal QC.
### As of Feb 11 2013 v. 2.1.0: added column HUMAN_ORTHOLOG_HGNC_ID as the last column in the file
### As of Feb 4 2015 v. 2.1.1: updated description in header
#
# Format:
# Comment lines begin with '#'
# Tab delimited fields, one line per rat gene.
# Fields in order:
# 1. RAT_GENE_SYMBOL
# 2. RAT_GENE_RGD_ID
# 3. RAT_GENE_NCBI_GENE_ID
# 4. HUMAN_ORTHOLOG_SYMBOL - human ortholog(s) to rat gene
# 5. HUMAN_ORTHOLOG_RGD_ID
# 6. HUMAN_ORTHOLOG_NCBI_GENE_ID
# 7. HUMAN_ORTHOLOG_SOURCE - RGD or HGNC
# 8. MOUSE_ORTHOLOG_SYMBOL - mouse ortholog(s) to rat gene
# 9. MOUSE_ORTHOLOG_RGD_ID
#10. MOUSE_ORTHOLOG_NCBI_GENE_ID
#11. MOUSE_ORTHOLOG_MGI_ID
#12. MOUSE_ORTHOLOG_SOURCE - RGD or MGI
#13. HUMAN_ORTHOLOG_HGNC_ID
#
# Most orthologs listed will be one-to-one-to-one across all three species.
# Where multiple human or mouse homologs are present in RGD the human and mouse
# fields will contain multiple entries separated by '|'.
#
# There may not be a curated ortholog for human or mouse in which case the fields
# for the respective species will be blank
#
# Multiple orthologs may be redundant when assigned by both RGD and MGI. These will
# be resolved over time.
#
# SOURCE fields will be either 'RGD', for orthologs manually created by RGD curators,
# or 'HGNC' for ortholog data derived from the HGNC Comparison of Orthology Predictions (HCOP) data compiled by:
# HUGO Gene Nomenclature Committee, European Bioinformatics Institute (EMBL-EBI)
# Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
# URL:  http://www.genenames.org/
#
# Reference for HGNC and HCOP:
# Gray KA, Yates B, Seal RL, Wright MW, Bruford EA. 
# Genenames.org: the HGNC resources in 2015.
# Nucleic Acids Res. 2015 Jan 28;43(Database issue):D1079-85. 
# PMID: 25361968,  doi: 10.1093/nar/gku1071.
#
RAT_GENE_SYMBOL	RAT_GENE_RGD_ID	RAT_GENE_NCBI_GENE_ID	HUMAN_ORTHOLOG_SYMBOL	HUMAN_ORTHOLOG_RGD	HUMAN_ORTHOLOG_NCBI_GENE_ID	HUMAN_ORTHOLOG_SOURCE	MOUSE_ORTHOLOG_SYMBOL	MOUSE_ORTHOLOG_RGD	MOUSE_ORTHOLOG_NCBI_GENE_ID	MOUSE_ORTHOLOG_MGI	MOUSE_ORTHOLOG_SOURCE	HUMAN_ORTHOLOG_HGNC_ID
2610318N02Rikl	1308065	287935	AP000553.5	16570462	107985532	Ortholog	2610318N02Rik	1317621	70458	MGI:1917708	Transitive Ortholog Pipeline	
4933405O20Rikl	1642415	100125384	AC099730.1	16553205	100631258	Ortholog	4933405O20Rik	1617305	243996	MGI:2142174	Transitive Ortholog Pipeline	
Adgrd2	402289764	134486217	ADGRD2	1350453	347088	Ortholog	Adgrd2-ps	2311269	674251	MGI:2685845	Transitive Ortholog Pipeline	HGNC:18651
Blacat1	402419174	134481496	BLACAT1	7245155	101669762	Ortholog	Gm29695	9672269	100505034	MGI:5588854	Transitive Ortholog Pipeline	HGNC:48597
C11H3orf85	402368338	134480925	C3orf85	12907514	401081	Ortholog	Gm5485	1622669	433023	MGI:3647875	Transitive Ortholog Pipeline	HGNC:53432
C14H22orf31	402046207	134481692	C22orf31	1604374	25770	Ortholog	Gm30172	9672302	102631980	MGI:5589331	Transitive Ortholog Pipeline	HGNC:26931
Cdhr18	1565725	289926	CDHR18P	38652534	100130345	Ortholog	Cdhr18	1615657	238939	MGI:2685127	Transitive Ortholog Pipeline	HGNC:53742
Chd9nb	402440348	134483616	CHD9NB	16568284	105371267	Ortholog	Gm19935	5139096	100503868	MGI:5012120	Transitive Ortholog Pipeline	HGNC:53436
Dusp13a	163748611	128932650	DUSP13A	158012654	128854680	Ortholog	Dusp13a	163705727	128932648	MGI:7470874	Transitive Ortholog Pipeline	HGNC:56772
Hapstr2	1560171	367949	HAPSTR2	38668552	389895	Ortholog	Gm715	1622865	279618	MGI:2685561	Transitive Ortholog Pipeline	HGNC:55138
Iqcf3	1565277	501050	IQCF3	1353537	401067	Ortholog	Iqcf3	1619171	68265	MGI:1915515	Transitive Ortholog Pipeline	HGNC:31816
Lce1m	1588875	688413	LCE5A	1352803	254910	Ortholog	Lce1m	1614383	66203	MGI:1913453	Transitive Ortholog Pipeline	HGNC:16614
LOC102548041	7565604	102548041	LOC105371153	38630812	105371153	Ortholog	4933440M02Rik	5685468	71208	MGI:1918458	Transitive Ortholog Pipeline	
LOC108351956	11455030	108351956	RNF228	150340634	122319436	Ortholog	Gm2102	2308747	100039210	MGI:3780270	Transitive Ortholog Pipeline	HGNC:55809
LOC134479581	402348346	134479581	LOC122455340	150429682	122455340	Ortholog	Gm9918	11082574	432988	MGI:3646315	Transitive Ortholog Pipeline	
LOC134480818	402108151	134480818	LOC122526780	150429716	122526780	Ortholog	Gm57849	150429728	122526781	MGI:7512645	Transitive Ortholog Pipeline	
LOC134486458	402087899	134486458	PET117	5688594	100303755	Ortholog	Pet117	5683850	100048644	MGI:5295678	Transitive Ortholog Pipeline	HGNC:40045
Misfal	6491878	100911574	MISFA	6766625	100506540	Ortholog	Misfa	1613816	629141	MGI:3642801	Transitive Ortholog Pipeline	HGNC:44122
Nbdy	402460988	134484180	NBDY	8662134	550643	Ortholog	Nbdy	1614330	70123	MGI:1917373	Transitive Ortholog Pipeline	HGNC:50713
Pabpc1l2b	402146755	134484067	PABPC1L2B	1642212	645974	Ortholog	Pabpc1l2b	1622425	668382	MGI:3644774	Transitive Ortholog Pipeline	HGNC:31852
Pmis2	6487791	100912333	PMIS2	13439628	111216276	Ortholog	Pmis2	2311160	74927	MGI:1922177	Transitive Ortholog Pipeline	HGNC:53649
Scpppq1	2323137	100359907	SCPPPQ1	38624342	105377321	Ortholog	Scpppq1	5144823	100271704	MGI:4937294	Transitive Ortholog Pipeline	HGNC:56851
Smim10l2a	9296500	103694491	SMIM10L2A	1605492	399668	Ortholog	Smim10l2a	1620470	320237	MGI:2443645	Transitive Ortholog Pipeline	HGNC:34499
Smim39	402135253	134480355	SMIM39	15036975	113523639	Ortholog	Smim39	127338467	121811709	MGI:6848416	Transitive Ortholog Pipeline	HGNC:54076
Trim75l-ps1	1565534	502072	TRIM75	1602800	391714	Ortholog	Trim75	1619692	333307	MGI:2685640	Transitive Ortholog Pipeline	HGNC:32686
Tunar	41061531	120103614	TUNAR	6484644	100507043	Ortholog	Tunar	1608813	69952	MGI:1917202	Transitive Ortholog Pipeline	HGNC:44088