# RGD-PIPELINE: ftp-file-extracts
# MODULE: annotations-version-1.1.9 (Oct 10, 2019)
# GENERATED-ON: 2024/11/16
# PURPOSE: annotations about active Pig objects extracted from RGD database
# ONTOLOGY: VT: Vertebrate Trait Ontology
# CONTACT: rgd.data@mcw.edu
# FORMAT: tab delimited text
# NOTES: multiple values in a single column are separated by '|'
#
#COLUMN INFORMATION:
#
#1   RGD_ID	          unique RGD_ID of the annotated object
#2   OBJECT_SYMBOL      official symbol of the annotated object
#3   OBJECT_NAME        official name of the annotated object
#4   OBJECT_TYPE        annotated object data type: one of ['gene','qtl','strain']
#5   TERM_ACC_ID        ontology term accession id
#6   TERM_NAME          ontology term name
#7   QUALIFIER          optional qualifier
#8   EVIDENCE           evidence
#9   WITH               with info
#10  ASPECT             aspect
#11  REFERENCES         db references (Reference RGDID|PUBMED ID)
#12  CREATED_DATE       created date
#13  ASSIGNED_BY        assigned by
#14  MESH_OMIM_ID       MESH:xxx or OMIM:xxx id corresponding to RDO:xxx id found in TERM_ACC_ID column (RGD/CTD Disease Ontology annotations only)
#15  CURATION_NOTES     curation notes provided by RGD curators
#16  ORIGINAL_REFERENCE original reference
RGD_ID	OBJECT_SYMBOL	OBJECT_NAME	OBJECT_TYPE	TERM_ACC_ID	TERM_NAME	QUALIFIER	EVIDENCE	WITH	ASPECT	REFERENCES	CREATED_DATE	ASSIGNED_BY	MESH_OMIM_ID	CURATION_NOTES	ORIGINAL_REFERENCE
13915571	LOC404703	prepro-beta-defensin 3	gene	VT:0010463	coat/hair pigmentation trait		ISO	RGD:12262638	V	RGD:9068941	20230824	OMIA		Coat colour, dominant black	PMID:12692166|PMID:15649147|PMID:17483404|PMID:17947548|PMID:19197024|PMID:21321476|PMID:24098367|PMID:31658272|PMID:34751460|PMID:35037272|PMID:35510419|PMID:36427679|PMID:37582787
13937800	ASIP	agouti signaling protein	gene	VT:0010463	coat/hair pigmentation trait		ISO	RGD:12191791	V	RGD:9068941	20230128	OMIA		Coat colour, saddle tan vs black-and-tan	PMID:23519866|PMID:31658272|PMID:33672409|PMID:34385618|PMID:36427679
13937800	ASIP	agouti signaling protein	gene	VT:0010463	coat/hair pigmentation trait		ISO	RGD:12191791	V	RGD:9068941	20231005	OMIA		Coat colour, agouti	PMID:12692166|PMID:15520882|PMID:15965787|PMID:17630272|PMID:21321476|PMID:21846741|PMID:22433982|PMID:22524303|PMID:23519866|PMID:31658272|PMID:32635139|PMID:34385618|PMID:34751460|PMID:35046238|PMID:35510419|PMID:35622750|PMID:36427679|PMID:37582787|PMID:37778752|PMID:8202545
14147901	MC1R	melanocortin 1 receptor	gene	VT:0010463	coat/hair pigmentation trait		ISO	RGD:12175281	V	RGD:9068941	20230824	OMIA		Coat colour, melanistic mask	PMID:12692165|PMID:21353269|PMID:29932470|PMID:33672409|PMID:34751460|PMID:35510419|PMID:35595349|PMID:36427679|PMID:37582787
14147970	PMEL	premelanosome protein	gene	VT:0010463	coat/hair pigmentation trait		ISO	RGD:12194613	V	RGD:9068941	20230128	OMIA		Coat colour, merle	PMID:12580795|PMID:16407134|PMID:16504149|PMID:17186850|PMID:19192156|PMID:27387721|PMID:30071510|PMID:30123327|PMID:30235206|PMID:3099512|PMID:31238727|PMID:32560567|PMID:330141|PMID:340189|PMID:34370083|PMID:34751460|PMID:35510419|PMID:3998446|PMID:4031467|PMID:418699|PMID:6323572|PMID:6410614|PMID:6817463|PMID:7006993
14191396	PSMB7	proteasome 20S subunit beta 7	gene	VT:0010463	coat/hair pigmentation trait		ISO	RGD:12389471	V	RGD:9068941	20230128	OMIA		Coat colour, harlequin	PMID:18513894|PMID:21256207|PMID:31658272|PMID:3270445|PMID:34751460|PMID:35510419|PMID:3998446