# RGD-PIPELINE: ftp-file-extracts
# MODULE: annotations-version-1.2.0 (Jul 27, 2026)
# GENERATED-ON: 2026/08/01
# PURPOSE: annotations about active Chinchilla objects extracted from RGD database
# ONTOLOGY: VT: Vertebrate Trait Ontology
# CONTACT: rgd.data@mcw.edu
# FORMAT: tab delimited text
# NOTES: multiple values in a single column are separated by '|'
#
# MIGRATION NOTE (July 2026): these files were previously located in the
#   'annotated_rgd_objects_by_ontology/with_terms' directory and named using the organism
#   genus (f.e. 'rattus_terms_go'). They are now located in the 'annotations/with_terms' directory,
#   named with the RGD species short name (f.e. 'rat_terms_go.txt.gz'), and gzip-compressed.
#
#COLUMN INFORMATION:
#
#1   RGD_ID	          unique RGD_ID of the annotated object
#2   OBJECT_SYMBOL      official symbol of the annotated object
#3   OBJECT_NAME        official name of the annotated object
#4   OBJECT_TYPE        annotated object data type: one of ['gene','qtl','strain']
#5   TERM_ACC_ID        ontology term accession id
#6   TERM_NAME          ontology term name
#7   QUALIFIER          optional qualifier
#8   EVIDENCE           evidence
#9   WITH               with info
#10  ASPECT             aspect
#11  REFERENCES         db references (Reference RGDID|PUBMED ID)
#12  CREATED_DATE       created date
#13  ASSIGNED_BY        assigned by
#14  MESH_OMIM_ID       MESH:xxx or OMIM:xxx id corresponding to RDO:xxx id found in TERM_ACC_ID column (RGD/CTD Disease Ontology annotations only)
#15  CURATION_NOTES     curation notes provided by RGD curators
#16  ORIGINAL_REFERENCE original reference
RGD_ID	OBJECT_SYMBOL	OBJECT_NAME	OBJECT_TYPE	TERM_ACC_ID	TERM_NAME	QUALIFIER	EVIDENCE	WITH	ASPECT	REFERENCES	CREATED_DATE	ASSIGNED_BY	MESH_OMIM_ID	CURATION_NOTES	ORIGINAL_REFERENCE
8888424	Psmb7	proteasome 20S subunit beta 7	gene	VT:0010463	coat/hair pigmentation trait		ISO	RGD:12389471	V	RGD:9068941	20230128	OMIA		Coat colour, harlequin	PMID:18513894|PMID:21256207|PMID:31658272|PMID:3270445|PMID:34751460|PMID:35510419|PMID:3998446
8928916	Asip	agouti signaling protein	gene	VT:0010463	coat/hair pigmentation trait		ISO	RGD:12191791	V	RGD:9068941	20230128	OMIA		Coat colour, saddle tan vs black-and-tan	PMID:23519866|PMID:31658272|PMID:33672409|PMID:34385618|PMID:36427679
8928916	Asip	agouti signaling protein	gene	VT:0010463	coat/hair pigmentation trait		ISO	RGD:12191791	V	RGD:9068941	20250925	OMIA		Coat colour, agouti	PMID:12692166|PMID:15520882|PMID:15965787|PMID:17630272|PMID:21321476|PMID:21846741|PMID:22433982|PMID:22524303|PMID:23519866|PMID:31658272|PMID:32635139|PMID:34385618|PMID:34751460|PMID:35046238|PMID:35510419|PMID:35622750|PMID:36427679|PMID:37582787|PMID:37778752|PMID:40965331|PMID:8202545
8963736	Pmel	premelanosome protein	gene	VT:0010463	coat/hair pigmentation trait		ISO	RGD:12194613	V	RGD:9068941	20230128	OMIA		Coat colour, merle	PMID:12580795|PMID:16407134|PMID:16504149|PMID:17186850|PMID:19192156|PMID:27387721|PMID:30071510|PMID:30123327|PMID:30235206|PMID:3099512|PMID:31238727|PMID:32560567|PMID:330141|PMID:340189|PMID:34370083|PMID:34751460|PMID:35510419|PMID:3998446|PMID:4031467|PMID:418699|PMID:6323572|PMID:6410614|PMID:6817463|PMID:7006993
9007529	Nr4a1	nuclear receptor subfamily 4 group A member 1	gene	VT:0000183	blood pressure trait		ISO	RGD:620029	V	RGD:9068941	20200609	RGD			PMID:24722447|REF_RGD_ID:12910103
9007529	Nr4a1	nuclear receptor subfamily 4 group A member 1	gene	VT:0000187	triglyceride amount		ISO	RGD:620029	V	RGD:9068941	20200609	RGD			PMID:24722447|REF_RGD_ID:12910103
9007529	Nr4a1	nuclear receptor subfamily 4 group A member 1	gene	VT:0003799	macrophage migration trait		ISO	RGD:620029	V	RGD:9068941	20200609	RGD			PMID:24722447|REF_RGD_ID:12910103
9007529	Nr4a1	nuclear receptor subfamily 4 group A member 1	gene	VT:0003947	cholesterol amount		ISO	RGD:620029	V	RGD:9068941	20200609	RGD			PMID:24722447|REF_RGD_ID:12910103
9007529	Nr4a1	nuclear receptor subfamily 4 group A member 1	gene	VT:0005265	blood urea nitrogen amount		ISO	RGD:620029	V	RGD:9068941	20200609	RGD			PMID:24722447|REF_RGD_ID:12910103
