# RGD-PIPELINE: ftp-file-extracts # MODULE: chinchilla-genes-version-2023-03-10 # GENERATED-ON: 2026/05/09 # PURPOSE: information about active chinchilla genes extracted from RGD database # CONTACT: rgd.data@mcw.edu # FORMAT: tab delimited text # NOTES: multiple values in a single column are separated by ';' # #COLUMN INFORMATION: #1 GENE_RGD_ID RGD_ID of the gene #2 GENE_TYPE gene type #3 SYMBOL official gene symbol #4 NAME gene name #5 GENE_DESC gene description (if available) #6 CONTIG contig acc id #7 START_POS start position within contig #8 STOP_POS stop position within contig #9 STRAND strand information #10 NCBI_GENE_ID NCBI Gene ID #11 GENBANK_NUCLEOTIDE GenBank Nucleotide ID(s) #12 GENBANK_PROTEIN GenBank Protein ID(s) #13 GENE_REFSEQ_STATUS gene RefSeq Status (from NCBI) 8932083 protein-coding Tgif2 TGFB induced factor homeobox 2 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); nodal signaling pathway (ortholog); positive regulation of neuron differentiation (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955422 25024359 25042568 - 102025475 AGCD01023240;GBDK01361422;XM_005384746;XM_005384747;XM_005384748;XM_005384749;XM_005384750;XM_005384751 XP_005384803;XP_005384804;XP_005384805;XP_005384806;XP_005384807;XP_005384808 MODEL 39131973 snorna SNORD81 Small nucleolar RNA SNORD81 9059253 protein-coding Rspo4 R-spondin 4 INVOLVED IN nail development (ortholog); positive regulation of Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH genetic disease (ortholog); nonsyndromic congenital nail disorder 4 (ortholog) NW_004955596 265282 295283 - 102009786 AGCD01076512;AGCD01076513;AGCD01076514;GBCE01111001;XM_005414687 XP_005414744 MODEL 8880582 protein-coding LOC102008337 olfactory receptor 1030 NW_004955511 1667797 1668753 - 102008337 AGCD01066377;XM_005407970 XP_005408027 MODEL 8850213 ncrna LOC102023337 uncharacterized LOC102023337 NW_004955409 24271717 24309073 - 102023337 AGCD01010080;GBCE01171997;XR_001232657 MODEL 9061205 protein-coding LOC102028836 indolethylamine N-methyltransferase-like NW_004955410 31911807 31918851 - 102028836 AGCD01011333;GBDK01159055;XM_013510498 XP_013365952 MODEL 8802628 protein-coding Bpifb4 BPI fold containing family B member 4 FOUND IN cytosol (ortholog) NW_004955422 28166892 28190403 - 102004398 AGCD01023344;AGCD01023345;GBBH01019084;XM_013513875;XM_013513876 XP_013369329;XP_013369330 MODEL 39133478 snrna U2 U2 spliceosomal RNA 8888424 protein-coding Psmb7 proteasome 20S subunit beta 7 ENCODES a protein that exhibits threonine-type endopeptidase activity (ortholog); INVOLVED IN proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); coat/hair pigmentation trait (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955419 3706273 3761603 + 102024910 AGCD01019733;GBDF01010387;XM_005382496 XP_005382553 MODEL 8740232 protein-coding Slit2 slit guidance ligand 2 ENCODES a protein that exhibits chemorepellent activity (ortholog); GTPase inhibitor activity (ortholog); heparan sulfate proteoglycan binding (ortholog); INVOLVED IN aortic valve morphogenesis (ortholog); apoptotic process involved in luteolysis (ortholog); axon extension involved in axon guidance (ortholog); PARTICIPATES IN glypican signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); anti-basement membrane glomerulonephritis (ortholog); atrial fibrillation (ortholog); FOUND IN axon (ortholog); cell body (ortholog); cell projection (ortholog) NW_004955480 3982977 4314160 - 102030421 AGCD01056633;AGCD01056634;AGCD01056635;AGCD01056636;GBCE01001769;XM_005402476;XM_005402478;XM_005402479;XM_013503310 XP_005402533;XP_005402535;XP_005402536;XP_013358764 MODEL 9000527 pseudo LOC102025762 general transcription factor 3C polypeptide 6 pseudogene NW_004955407 15853645 15854388 - 102025762 AGCD01007201 MODEL 8925934 protein-coding Lgals3bp galectin 3 binding protein ASSOCIATED WITH liver cirrhosis (ortholog); FOUND IN extracellular region (ortholog) NW_004955506 3731810 3741314 + 102028775 AGCD01065319;GBBH01003797;XM_005407353 XP_005407410 MODEL 8788402 protein-coding LOC102010238 olfactory receptor 151 NW_004955412 25594862 25595791 + 102010238 AGCD01013161;XM_005378427 XP_005378484 MODEL 9000276 protein-coding LOC102017526 uncharacterized LOC102017526 NW_004955844 877 5035 + 102017526 AGCD01078475;AGCD01078476;GBDK01121913;XM_005415129 XP_005415186 MODEL 8880737 ncrna LOC102019055 uncharacterized LOC102019055 NW_004955414 24422049 24443415 + 102019055 AGCD01015546;GBDF01207599;XR_260194 MODEL 8707634 protein-coding LOC102028488 AT-hook-containing transcription factor NW_004955934 1287 9868 + 102028488 AGCD01078694;GBDJ01180201;GBDK01128523;XM_005415151 XP_005415208 MODEL 9034137 protein-coding Rab3gap2 RAB3 GTPase activating non-catalytic protein subunit 2 ENCODES a protein that exhibits enzyme regulator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN establishment of protein localization to endoplasmic reticulum membrane (ortholog); positive regulation of autophagosome assembly (ortholog); positive regulation of endoplasmic reticulum tubular network organization (ortholog); ASSOCIATED WITH amenorrhea (ortholog); cataract (ortholog); esophageal atresia/tracheoesophageal fistula (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); GTPase complex (ortholog) NW_004955520 3411504 3483703 + 102022531 AGCD01068102;AGCD01068103;GBDK01092646;XM_005409267;XM_005409268;XM_005409269 XP_005409324;XP_005409325;XP_005409326 MODEL 8945075 protein-coding Rasgef1a RasGEF domain family member 1A ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN cell migration (ortholog); positive regulation of Ras protein signal transduction (ortholog) NW_004955546 1304126 1332436 - 102006827 AGCD01072047;AGCD01072048;GBDI01288475;XM_013508392;XM_013508393 XP_013363846;XP_013363847 MODEL 9031520 ncrna LOC102027822 uncharacterized LOC102027822 NW_004955410 405980 406757 + 102027822 AGCD01010590;GBDF01121258;XR_001232717;XR_259815 MODEL 8713107 protein-coding Toe1 target of EGR1, exonuclease ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); poly(A)-specific ribonuclease activity (ortholog); snRNA binding (ortholog); INVOLVED IN snRNA 3'-end processing (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); pontocerebellar hypoplasia (ortholog); FOUND IN Cajal body (ortholog); cytoplasm (ortholog) NW_004955464 12924185 12927567 - 102003324 AGCD01050240;GBDK01239343;XM_005398712;XM_013521661 XP_005398769;XP_013377115 MODEL 8748329 protein-coding Pon2 paraoxonase 2 ENCODES a protein that exhibits acyl-L-homoserine-lactone lactonohydrolase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN lactone catabolic process (ortholog); response to oxidative stress (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); autism spectrum disorder (ortholog); FOUND IN plasma membrane (ortholog) NW_004955432 11988009 12020702 - 102018011 AGCD01030958;AGCD01030959;AGCD01030960;GBBH01032040;XM_005388064 XP_005388121 MODEL 8741063 protein-coding Vwa2 von Willebrand factor A domain containing 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN calcium-independent cell-matrix adhesion (ortholog); regulation of insulin receptor signaling pathway (ortholog); FOUND IN basement membrane (ortholog); extracellular region (ortholog) NW_004955431 19224373 19274475 + 102016083 AGCD01030445;AGCD01030446;AGCD01030447;GBDI01115147;XM_005387824;XM_005387825;XM_013515834 XP_005387881;XP_005387882;XP_013371288 MODEL 8994995 protein-coding LOC102012648 galectin-9-like NW_004955481 5681486 5685579 - 102012648 AGCD01057000;XM_005402781 XP_005402838 MODEL 8805014 protein-coding Pdcd1lg2 programmed cell death 1 ligand 2 ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN negative regulation of activated T cell proliferation (ortholog); negative regulation of interleukin-10 production (ortholog); negative regulation of T cell activation (ortholog); ASSOCIATED WITH autoimmune hepatitis (ortholog); Coxsackievirus Infections (ortholog); cutaneous leishmaniasis (ortholog); FOUND IN endomembrane system (ortholog); plasma membrane (ortholog) NW_004955434 9540047 9559335 + 102011356 AGCD01032305;XM_013516295 XP_013371749 MODEL 10239047 protein-coding LOC106147053 uncharacterized LOC106147053 NW_004955514 4105400 4112478 + 106147053 AGCD01067127;GBDF01057017;XM_013506749 XP_013362203 MODEL 8820750 protein-coding Pard6b par-6 family cell polarity regulator beta INVOLVED IN protein-containing complex assembly (ortholog); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); bicellular tight junction (ortholog) NW_004955445 7625303 7638652 - 102026367 AGCD01039547;GBCQ01040751;GBCQ01040752;XM_013518368 XP_013373822 MODEL 8904868 pseudo LOC102030267 mitochondrial cardiolipin hydrolase pseudogene NW_004955404 47267635 47268453 - 102030267 AGCD01004480 MODEL 8886297 ncrna LOC102005400 uncharacterized LOC102005400 NW_004955507 3809575 3820981 - 102005400 AGCD01065638;GBDF01158104;XR_001231636 MODEL 8975570 protein-coding Snapin SNAP associated protein ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); SNARE binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); autophagosome maturation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN acrosomal vesicle (ortholog); BLOC-1 complex (ortholog); BORC complex (ortholog) NW_004955545 306546 308229 + 102018651 AGCD01071783;GBCB01002603;XM_005411436 XP_005411493 MODEL 10361932 ncrna LOC106148145 uncharacterized LOC106148145 NW_004955416 14490480 14494426 - 106148145 AGCD01017271;GBDK01095908;XR_001233318 MODEL 8816567 pseudo LOC102010616 60S ribosomal protein L28 pseudogene NW_004955516 3854520 3859651 - 102010616 AGCD01067515 MODEL 8807388 protein-coding LOC102009447 vomeronasal type-1 receptor 4-like NW_004955603 356667 357605 - 102009447 AGCD01076839;XM_005414843 XP_005414900 MODEL 9025974 protein-coding Septin4 septin 4 ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); identical protein binding (ortholog); INVOLVED IN brain development (ortholog); flagellated sperm motility (ortholog); hematopoietic stem cell homeostasis (ortholog); ASSOCIATED WITH Lewy body dementia (ortholog); Parkinson's disease (ortholog); Spermatogenic Failure 99 (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cytoplasm (ortholog) NW_004955451 4505318 4530387 + 102022448 AGCD01043128;GBDF01047745;XM_005394007;XM_005394008;XM_005394009;XM_005394010;XM_005394011;XM_005394014 XP_005394064;XP_005394065;XP_005394066;XP_005394067;XP_005394068;XP_005394071 MODEL 8998317 pseudo LOC102024342 60S ribosomal protein L17 pseudogene NW_004955484 3330331 3330824 - 102024342 AGCD01058175 MODEL 8869401 ncrna LOC102006479 uncharacterized LOC102006479 NW_004955497 7454409 7464014 - 102006479 AGCD01062676;GBDF01019845;XR_264210 MODEL 8988956 ncrna LOC102003665 uncharacterized LOC102003665 NW_004955422 25513884 25522156 + 102003665 AGCD01023251;GBDF01153136;XR_260914 MODEL 8963796 protein-coding LOC102027151 uncharacterized LOC102027151 NW_004955409 3663363 3669556 - 102027151 AGCD01009258;GBCB01111656;XM_005376659;XM_013510291 XP_005376716;XP_013365745 MODEL 8869555 protein-coding LOC102011387 serine/threonine-protein phosphatase with EF-hands 2-like NW_004955797 7064 18498 + 102011387 AGCD01078368;GBCQ01026990;GBDJ01093079;XM_013510194 XP_013365648 MODEL 8766832 ncrna LOC102006834 uncharacterized LOC102006834 NW_004955445 2237508 2240322 - 102006834 AGCD01039351;GBDF01077375;XR_262296 MODEL 8729841 protein-coding Ppp2r2d protein phosphatase 2 regulatory subunit Bdelta ENCODES a protein that exhibits enzyme-substrate adaptor activity (ortholog); protein phosphatase regulator activity (ortholog); INVOLVED IN regulation of chromosome segregation (ortholog); FOUND IN cytoplasm (ortholog); protein phosphatase type 2A complex (ortholog) NW_004955477 9571974 9611076 + 102022283 AGCD01055677;GBDF01108912;XM_005402033;XM_005402034 XP_005402090;XP_005402091 MODEL 8873519 protein-coding Proc protein C, inactivator of coagulation factors Va and VIIIa ENCODES a protein that exhibits identical protein binding (ortholog); oligopeptidase activity (ortholog); peptidase activity (ortholog); INVOLVED IN liver development (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of blood coagulation (ortholog); PARTICIPATES IN coagulation cascade pathway; protease mediated signaling via protease-activated receptor 1; protein C anticoagulant pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); acute kidney failure (ortholog); Acute Lung Injury (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular region (ortholog); Golgi apparatus (ortholog) NW_004955459 3097229 3105566 - 102004570 AGCD01048008;GBDJ01271470;XM_005397611;XM_005397612;XM_005397613;XM_005397614;XM_013521066;XM_013521067 XP_005397668;XP_005397669;XP_005397670;XP_005397671;XP_013376520;XP_013376521 MODEL 9031037 protein-coding Scrn3 secernin 3 INVOLVED IN detection of temperature stimulus involved in sensory perception of pain (ortholog) NW_004955449 935061 960514 - 102007384 AGCD01041776;AGCD01041777;AGCD01041778;GBDJ01173998;XM_005393190;XM_013518736 XP_005393247;XP_013374190 MODEL 8799405 protein-coding Rec114 REC114 meiotic recombination protein INVOLVED IN meiotic DNA double-strand break formation (ortholog); oogenesis (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Oocyte/Zygote/Embryo Maturation Arrest 10 (ortholog); FOUND IN chromosome (ortholog) NW_004955450 4002734 4076292 - 102023415 AGCD01042453;AGCD01042454;GBDF01155136;XM_005393591;XM_005393592;XM_005393593;XM_005393594 XP_005393648;XP_005393649;XP_005393650;XP_005393651 MODEL 8864507 protein-coding Elmod1 ELMO domain containing 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN cilium assembly (ortholog); intracellular protein localization (ortholog); protein transport (ortholog); FOUND IN cilium (ortholog); glutamatergic synapse (ortholog); Golgi apparatus (ortholog) NW_004955412 9975110 10013932 + 102028513 AGCD01012753;AGCD01012754;GBCE01023906;GBDI01135314;XM_013511123 XP_013366577 MODEL 9014073 protein-coding LOC102021597 alpha-1-antiproteinase S-like ENCODES a protein that exhibits endopeptidase inhibitor activity (ortholog); identical protein binding (ortholog); protease binding (ortholog); INVOLVED IN negative regulation of serine-type endopeptidase activity (ortholog); response to chromate (ortholog); response to cytokine (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH otitis media; Otitis Media with Effusion; acute kidney failure (ortholog); FOUND IN extracellular region; endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955438 17920200 17929105 + 102021597 AGCD01035456;GBDF01154079;XM_005390393 XP_005390450 MODEL 8963787 protein-coding Rhod ras homolog family member D ENCODES a protein that exhibits GTP binding (ortholog); protein kinase binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); actin filament polymerization (ortholog); fibroblast growth factor receptor signaling pathway (ortholog); FOUND IN early endosome (ortholog) NW_004955422 18343611 18353269 - 102026536 AGCD01022946;GBCQ01039817;XM_005384359 XP_005384416 MODEL 8755682 protein-coding LOC102015610 dehydrogenase/reductase SDR family member 2, mitochondrial-like NW_004955409 36455963 36470704 - 102015610 AGCD01010462;AGCD01010463;GBDJ01240364;XM_013510424 XP_013365878 MODEL 8715298 protein-coding Ptpro protein tyrosine phosphatase receptor type O ENCODES a protein that exhibits cadherin binding (ortholog); protein homodimerization activity (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN axon guidance (ortholog); cell morphogenesis (ortholog); glomerulus development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); focal segmental glomerulosclerosis (ortholog); FOUND IN apical plasma membrane (ortholog); dendritic spine (ortholog); GABA-ergic synapse (ortholog) NW_004955413 12019026 12248026 + 102005022 AGCD01013977;AGCD01013978;AGCD01013979;AGCD01013980;AGCD01013981;AGCD01013982;AGCD01013983;AGCD01013984;AGCD01013985;GBDJ01377144;XM_005379017;XM_013511680;XM_013511681 XP_005379074;XP_013367134;XP_013367135 MODEL 8896070 pseudo LOC102026133 electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial-like NW_004955505 2313143 2314323 + 102026133 AGCD01064992 MODEL 10275540 ncrna LOC106149893 uncharacterized LOC106149893 NW_004955456 13264037 13266528 - 106149893 AGCD01046582;GBCB01008407;XR_001236349;XR_001236350 MODEL 8912805 ncrna LOC102011005 uncharacterized LOC102011005 NW_004955418 27966614 27993848 - 102011005 AGCD01019421;AGCD01019422;GBDF01041994;XR_260587;XR_260588 MODEL 8995536 protein-coding Slc39a5 solute carrier family 39 member 5 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); cellular response to zinc ion starvation (ortholog); eye development (ortholog); ASSOCIATED WITH Myopia 24, Autosomal Dominant (ortholog); FOUND IN basolateral plasma membrane (ortholog) NW_004955458 3843492 3849794 + 102005568 AGCD01047351;GBDK01295504;XM_005397299;XM_005397300;XM_005397301 XP_005397356;XP_005397357;XP_005397358 MODEL 8710056 protein-coding LOC102018675 uncharacterized LOC102018675 NW_004955622 83258 210783 - 102018675 AGCD01077384;AGCD01077385;AGCD01077386;AGCD01077387;AGCD01077388;AGCD01077389;AGCD01077390;AGCD01077391;AGCD01077392;AGCD01077393;AGCD01077394;AGCD01077395;XM_013510157 XP_013365611 MODEL 8953547 protein-coding Treml4 triggering receptor expressed on myeloid cells like 4 INVOLVED IN intracellular protein localization (ortholog); phagocytosis, engulfment (ortholog); positive regulation of defense response to virus by host (ortholog); FOUND IN endoplasmic reticulum (ortholog); endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955437 7827329 7846406 - 102010521 AGCD01034469;GBDK01021729;XM_005389682;XM_013517108;XM_013517109 XP_005389739;XP_013372562;XP_013372563 MODEL 39133479 snrna U2 U2 spliceosomal RNA 39131969 snorna SNORD81 Small nucleolar RNA SNORD81 9029295 protein-coding Pla2g3 phospholipase A2 group III ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); glycerophospholipase activity (ortholog); INVOLVED IN acrosome assembly (ortholog); cell development (ortholog); cell maturation (ortholog); FOUND IN centriole (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955455 5314520 5320151 - 102004676 AGCD01045720;GBCC01027921;XM_005396297;XM_013520479;XM_013520480 XP_005396354;XP_013375933;XP_013375934 MODEL 8896389 protein-coding Skic8 SKI8 subunit of superkiller complex INVOLVED IN negative regulation of myeloid cell differentiation (ortholog); nuclear-transcribed mRNA catabolic process (ortholog); nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; FOUND IN Cdc73/Paf1 complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955450 771646 788895 - 102008797 AGCD01042344;GBCE01077094;XM_005393443;XM_005393444 XP_005393500;XP_005393501 MODEL 39133480 snrna U2 U2 spliceosomal RNA 39133481 snrna U2 U2 spliceosomal RNA 39131971 snorna SNORD81 Small nucleolar RNA SNORD81 39132457 snorna SNORD82 Small nucleolar RNA SNORD82 39132471 snorna SNORD82 Small nucleolar RNA SNORD82 39133482 snrna U2 U2 spliceosomal RNA 39132709 snorna SNORD83 Small nucleolar RNA SNORD83 39133483 snrna U2 U2 spliceosomal RNA 39133484 snrna U2 U2 spliceosomal RNA 39132715 snorna SNORD83 Small nucleolar RNA SNORD83 39132272 snorna SNORD83A small nucleolar RNA, C/D box 83A 39133380 snrna U2 U2 spliceosomal RNA 39132275 snorna SNORD83B small nucleolar RNA, C/D box 83B 39133384 snrna U2 U2 spliceosomal RNA 150537121 snorna SNORD86 small nucleolar RNA, C/D box 86 39133388 snrna U2 U2 spliceosomal RNA 39133390 snrna U2 U2 spliceosomal RNA 39132887 snorna SNORD87 small nucleolar RNA, C/D box 87 126903056 snorna SNORD88A small nucleolar RNA, C/D box 88A 39133392 snrna U2 U2 spliceosomal RNA 8894995 protein-coding Tgif2lx TGFB induced factor homeobox 2 like X-linked ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog) NW_004955525 2697167 2697772 + 102022009 AGCD01069103;GBDF01112701;XM_005409737 XP_005409794 MODEL 10295351 ncrna LOC106149894 uncharacterized LOC106149894 NW_004955456 16004172 16005972 + 106149894 AGCD01046681;GBDK01118045;XR_001236356 MODEL 39133394 snrna U2 U2 spliceosomal RNA 8719444 protein-coding Skida1 SKI/DACH domain containing 1 NW_004955429 7181234 7187309 + 102018422 AGCD01028583;AGCD01028584;GBDJ01303835;XM_013515352 XP_013370806 MODEL 626189154 snorna SNORD88C small nucleolar RNA, C/D box 88C 9025242 protein-coding LOC102011388 cytochrome P450 2D16-like NW_004956190 7085 8242 + 102011388 AGCD01079215;GBCQ01011641;GBDK01146022;XM_005415175 XP_005415232 MODEL 8806863 protein-coding LOC102019058 guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-7-like NW_004955415 31786275 31788023 + 102019058 AGCD01016697;XM_005381019;XM_013512238 XP_005381076;XP_013367692 MODEL 8842280 protein-coding Vwa3a von Willebrand factor A domain containing 3A ASSOCIATED WITH urinary bladder cancer (ortholog) NW_004955493 780808 829768 + 102009069 AGCD01060864;AGCD01060865;GBBH01001724;XM_005405057;XM_005405058;XM_005405059;XM_005405060;XM_005405061;XM_005405062;XM_005405063;XM_005405064;XM_013504833;XM_013504834;XM_013504836;XM_013504837;XM_013504838;XM_013504840;XR_001231282;XR_264065;XR_264066;XR_264067;XR_264068;XR_264069;XR_264070 XP_005405114;XP_005405115;XP_005405116;XP_005405117;XP_005405118;XP_005405119;XP_005405120;XP_005405121;XP_013360287;XP_013360288;XP_013360290;XP_013360291;XP_013360292;XP_013360294 MODEL 8771733 protein-coding Snca synuclein alpha ENCODES a protein that exhibits actin binding (ortholog); alpha-tubulin binding (ortholog); arachidonate binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); amyloid fibril formation (ortholog); behavioral response to cocaine (ortholog); PARTICIPATES IN apoptotic cell death pathway; Parkinson's disease pathway; ASSOCIATED WITH alcohol use disorder (ortholog); Alzheimer's disease (ortholog); amphetamine abuse (ortholog); FOUND IN actin cytoskeleton (ortholog); axon (ortholog); axon terminus (ortholog) NW_004955405 854011 962741 - 102008373 AGCD01004588;GBBH01051195;GBDK01308795;XM_013517311 XP_013372765 MODEL 8964666 pseudo LOC102006483 uncharacterized LOC102006483 NW_004955503 49005 53085 - 102006483 AGCD01064480 MODEL 8822320 protein-coding Pard6g par-6 family cell polarity regulator gamma PARTICIPATES IN protein kinase C (PKC) signaling pathway; FOUND IN protein-containing complex (ortholog) NW_004955402 63374837 63459327 - 102030141 AGCD01001670;AGCD01001671;GBDI01383965;XM_005373129;XM_005373130 XP_005373186;XP_005373187 MODEL 8777792 protein-coding Trerf1 transcriptional regulating factor 1 ENCODES a protein that exhibits nuclear progesterone receptor binding (ortholog); transcription coactivator activity (ortholog); transcription coactivator binding (ortholog); INVOLVED IN cellular response to progesterone stimulus (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955437 8411951 8600283 - 102018648 AGCD01034489;AGCD01034490;AGCD01034491;AGCD01034492;GBDF01084113;GBDK01059855;XM_013516789 XP_013372243 MODEL 8763963 protein-coding Ppp2r3a protein phosphatase 2 regulatory subunit B''alpha ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN eye photoreceptor cell differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN dopamine signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN protein phosphatase type 2A complex (ortholog) NW_004955501 2648017 2751999 - 102018949 AGCD01064091;GBDJ01199144;XM_005406782;XM_005406783;XM_013505755;XM_013505757 XP_005406839;XP_005406840;XP_013361209;XP_013361211 MODEL 8952419 protein-coding Skil SKI like proto-oncogene ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN blastocyst formation (ortholog); lens fiber cell differentiation (ortholog); lymphocyte homeostasis (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); Experimental Liver Cirrhosis (ortholog); Paraquat Lung (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955420 530531 554308 + 102020343 AGCD01020545;GBDI01355390;GBDJ01349393;XM_005382979 XP_005383036 MODEL 8942271 protein-coding Rec8 REC8 meiotic recombination protein INVOLVED IN double-strand break repair via homologous recombination (ortholog); fertilization (ortholog); homologous chromosome pairing at meiosis (ortholog); ASSOCIATED WITH azoospermia (ortholog); melanoma (ortholog); primary ovarian insufficiency (ortholog); FOUND IN chromosome (ortholog); condensed chromosome (ortholog); condensed chromosome, centromeric region (ortholog) NW_004955409 36223783 36231749 - 102011511 AGCD01010453;GBCE01171312;XM_013510405;XM_013510406 XP_013365859;XP_013365860 MODEL 9060574 ncrna LOC102028841 uncharacterized LOC102028841 NW_004955465 11698092 11699855 - 102028841 AGCD01050531;GBDK01348327;XR_263270 MODEL 8828788 protein-coding LOC102011006 olfactory receptor 2T11 NW_004955418 30157574 30163444 - 102011006 AGCD01019506;XM_005382367 XP_005382424 MODEL 8806603 pseudo LOC102012649 pre-mRNA-splicing factor SLU7 pseudogene NW_004955481 9058890 9071635 + 102012649 AGCD01057094 MODEL 8945647 protein-coding LOC102008338 olfactory receptor 5W2-like NW_004955511 810336 811271 + 102008338 AGCD01066344;XM_005408211 XP_005408268 MODEL 8879286 pseudo LOC102030268 myotubularin-related protein 6 pseudogene NW_004955405 11096098 11096767 - 102030268 AGCD01004826 MODEL 8809088 pseudo LOC102009451 archaemetzincin-2-like NW_004955403 30870358 30871472 + 102009451 AGCD01002408 MODEL 9006238 protein-coding Togaram1 TOG array regulator of axonemal microtubules 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cilium assembly (ortholog); positive regulation of microtubule polymerization (ortholog); ASSOCIATED WITH BROWN SYNDROME (ortholog); ciliopathy (ortholog); Joubert syndrome (ortholog); FOUND IN axoneme (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955409 16885564 16967865 - 102010557 AGCD01009751;AGCD01009752;AGCD01009753;AGCD01009754;AGCD01009755;AGCD01009756;GBBH01077401;XM_005376871 XP_005376928 MODEL 8820626 protein-coding Ptprq protein tyrosine phosphatase receptor type Q INVOLVED IN detection of mechanical stimulus involved in sensory perception of sound (ortholog); hematopoietic progenitor cell differentiation (ortholog); inner ear morphogenesis (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness 73 (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 84A (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); stereocilium base (ortholog) NW_004955405 19123905 19318619 + 102021834 AGCD01005031;AGCD01005032;AGCD01005033;AGCD01005034;AGCD01005035;GBCE01116834;XM_005374365;XM_013517925 XP_005374422;XP_013373379 MODEL 8763906 protein-coding Pon3 paraoxonase 3 ENCODES a protein that exhibits acyl-L-homoserine-lactone lactonohydrolase activity (ortholog); arylesterase activity (ortholog); dihydrocoumarin hydrolase activity (ortholog); INVOLVED IN carboxylic acid catabolic process (ortholog); coumarin catabolic process (ortholog); lactone catabolic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); atherosclerosis (ortholog); FOUND IN extracellular region (ortholog) NW_004955432 11945383 11983417 - 102017689 AGCD01030957;AGCD01030958;GBDJ01087076;XM_005388063 XP_005388120 MODEL 8840050 protein-coding Tgm2 transglutaminase 2 ENCODES a protein that exhibits calcium ion binding (ortholog); GTP binding (ortholog); histone dopaminyltransferase activity (ortholog); INVOLVED IN apoptotic cell clearance (ortholog); blood vessel remodeling (ortholog); branching involved in salivary gland morphogenesis (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ASSOCIATED WITH Brain Neoplasms (ortholog); Breast Neoplasms (ortholog); celiac disease (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955445 18544192 18576576 + 102014186 AGCD01039906;GBCB01061029;XM_005392542 XP_005392599 MODEL 8932390 protein-coding Elmod2 ELMO domain containing 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN regulation of defense response to virus (ortholog); ASSOCIATED WITH long QT syndrome (ortholog) NW_004955428 3289593 3308927 - 102013315 AGCD01027652;GBCQ01127045;XM_005386672;XM_005386673 XP_005386729;XP_005386730 MODEL 8775032 protein-coding Rab3il1 RAB3A interacting protein like 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); identical protein binding (ortholog); kinase binding (ortholog) NW_004955511 5797528 5810692 + 102006805 AGCD01066585;AGCD01066586;GBDF01005308;XM_005408129;XM_005408130;XM_013506427;XM_013506428;XM_013506429 XP_005408186;XP_005408187;XP_013361881;XP_013361882;XP_013361883 MODEL 151707880 snorna SNORD89 small nucleolar RNA, C/D box 89 10071964 ncrna LOC106148146 uncharacterized LOC106148146 NW_004955416 26312234 26321506 + 106148146 AGCD01017595;GBCQ01000569;XR_001233321 MODEL 9010601 pseudo LOC102023339 heat shock protein HSP 90-alpha pseudogene NW_004955462 1770313 1790894 - 102023339 AGCD01049132;AGCD01049133;XR_263136 MODEL 8932104 protein-coding LOC102026135 probable low-specificity L-threonine aldolase 1 NW_004955506 4320402 4325508 + 102026135 AGCD01065332;GBDI01170187;XM_005407510 XP_005407567 MODEL 8854175 protein-coding Ptprr protein tyrosine phosphatase receptor type R ENCODES a protein that exhibits protein kinase binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN ERBB2 signaling pathway (ortholog); in utero embryonic development (ortholog); negative regulation of epithelial cell migration (ortholog); FOUND IN cell junction (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955405 10767548 11133695 - 102029696 AGCD01004822;AGCD01004823;AGCD01004824;AGCD01004825;AGCD01004826;AGCD01004827;GBDJ01213984;XM_005374316;XM_005374317 XP_005374373;XP_005374374 MODEL 8707116 protein-coding Bpifb6 BPI fold containing family B member 6 NW_004955422 28214188 28224604 - 102004396 AGCD01023345;GBDF01181601;XM_005384854 XP_005384911 MODEL 10287355 protein-coding LOC106149895 uncharacterized LOC106149895 NW_004955456 15265845 15274439 - 106149895 AGCD01046666;GBDK01143761;XM_013520636 XP_013376090 MODEL 9031505 protein-coding LOC102027154 dynein light chain 1, cytoplasmic-like NW_004955410 29349071 29349349 - 102027154 AGCD01011287;XM_005377578 XP_005377635 MODEL 8833943 pseudo LOC102015611 BUB3-interacting and GLEBS motif-containing protein ZNF207-like NW_004955409 31897502 31900908 + 102015611 AGCD01010342 MODEL 8893532 protein-coding Septin5 septin 5 NW_004955442 18361072 18369648 - 102006399 AGCD01038004;GBCE01030386;XM_005391774;XM_013517956;XM_013517957;XM_013517958;XM_013517959;XM_013517960 XP_005391831;XP_013373410;XP_013373411;XP_013373412;XP_013373413;XP_013373414 MODEL 8942983 pseudo LOC102010239 mortality factor 4-like protein 1 pseudogene NW_004955412 28163408 28164375 + 102010239 AGCD01013249 MODEL 9020243 protein-coding Rspry1 ring finger and SPRY domain containing 1 ASSOCIATED WITH genetic disease (ortholog); Spondyloepimetaphyseal Dysplasia, Faden-Alkuraya Type (ortholog) NW_004955433 14843521 14884083 + 102022845 AGCD01031730;GBDF01121224;XM_005388375;XM_005388377 XP_005388432;XP_005388434 MODEL 8743366 pseudo LOC102030269 golgin subfamily A member 7 pseudogene NW_004955452 14254954 14255514 - 102030269 AGCD01044461 MODEL 8846680 pseudo LOC102021598 leucine-rich repeat and coiled-coil domain-containing protein 1-like NW_004955439 541151 543625 + 102021598 AGCD01035585 MODEL 8959254 protein-coding Slc39a6 solute carrier family 39 member 6 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN epithelial to mesenchymal transition (ortholog); intracellular zinc ion homeostasis (ortholog); lymphocyte activation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); esophagus squamous cell carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN apical plasma membrane (ortholog); endoplasmic reticulum (ortholog); lamellipodium membrane (ortholog) NW_004955402 22670598 22698455 - 102008795 AGCD01000608;GBDF01192816;XM_005372806 XP_005372863 MODEL 9010362 pseudo LOC102010625 coiled-coil domain-containing protein 126 pseudogene NW_004955526 455881 456356 + 102010625 AGCD01069233 MODEL 8744796 protein-coding Lgals4 galectin 4 ENCODES a protein that exhibits galactoside binding (ortholog); INVOLVED IN antibacterial peptide biosynthetic process (ortholog); defense response to bacterium (ortholog); FOUND IN extracellular region (ortholog) NW_004955468 694831 701623 + 102009366 AGCD01051725;AGCD01051726;GBBH01043207;XM_005399830;XM_013522455 XP_005399887;XP_013377909 MODEL 9065642 pseudo LOC102009452 serine/arginine repetitive matrix protein 1 pseudogene NW_004955451 7812936 7823923 - 102009452 AGCD01043254 MODEL 8968201 protein-coding LOC102011390 kynurenine/alpha-aminoadipate aminotransferase, mitochondrial-like NW_004955403 36263930 36284758 + 102011390 AGCD01002535;AGCD01002536;GBCQ01008057;GBCQ01008066;XM_013513334 XP_013368788 MODEL 9030923 protein-coding Scrt1 scratch family transcriptional repressor 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of neuron migration (ortholog); FOUND IN nuclear body (ortholog); nucleus (ortholog) NW_004955454 2948137 2953955 - 102028821 AGCD01045040;AGCD01045041;GBDF01045105;GBDF01261759;XM_013520102 XP_013375556 MODEL 8722127 protein-coding Proca1 protein interacting with cyclin A1 ENCODES a protein that exhibits cyclin binding (ortholog) NW_004955481 4451649 4461296 + 102024675 AGCD01056941;AGCD01056942;GBBH01155525;XM_005402725;XM_005402726;XM_005402728;XM_005402729;XM_005402730;XM_005402731;XM_005402733;XM_005402736;XM_005402737;XM_013503392;XM_013503393;XM_013503394;XM_013503395;XM_013503396;XM_013503397;XM_013503398 XP_005402782;XP_005402783;XP_005402785;XP_005402786;XP_005402787;XP_005402788;XP_005402790;XP_005402793;XP_005402794;XP_013358846;XP_013358847;XP_013358848;XP_013358849;XP_013358850;XP_013358851;XP_013358852 MODEL 9029711 ncrna LOC102027825 uncharacterized LOC102027825 NW_004955462 10052431 10055904 - 102027825 AGCD01049350;GBDF01226542;XR_001236589;XR_001236590 MODEL 10134877 ncrna LOC106147054 uncharacterized LOC106147054 NW_004955514 5106802 5110809 - 106147054 AGCD01067147;GBDF01166068;XR_001231761 MODEL 8804393 protein-coding LOC102018676 protein SPACA7-like NW_004955404 1903444 1922226 + 102018676 AGCD01003236;AGCD01003237;GBDF01001013;XM_005373996;XM_013515729 XP_005374053;XP_013371183 MODEL 8877139 protein-coding Pdcd2 programmed cell death 2 ENCODES a protein that exhibits enzyme binding (ortholog); protein carrier activity (ortholog); INVOLVED IN programmed cell death (ortholog); regulation of hematopoietic progenitor cell differentiation (ortholog); ribosomal small subunit biogenesis (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog) NW_004955411 3256612 3262685 + 102010043 AGCD01011544;AGCD01011545;GBBH01209693;XM_013510897 XP_013366351 MODEL 8772465 protein-coding Vwa3b von Willebrand factor A domain containing 3B ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 22 (ortholog); Spinocerebellar Ataxias (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955470 4658088 4850277 + 102027837 AGCD01052734;AGCD01052735;AGCD01052736;AGCD01052737;AGCD01052738;AGCD01052739;GBDF01081475;XM_005400699;XM_005400700;XM_005400701;XM_005400703;XM_005400704;XM_005400705;XM_005400706;XM_005400707;XM_013522812 XP_005400756;XP_005400757;XP_005400758;XP_005400760;XP_005400761;XP_005400762;XP_005400763;XP_005400764;XP_013378266 MODEL 9019281 protein-coding Elmod3 ELMO domain containing 3 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN auditory receptor cell development (ortholog); cilium assembly (ortholog); cytoskeleton organization (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 81 (ortholog); autosomal recessive nonsyndromic deafness 88 (ortholog); hypomyelinating leukodystrophy 7 (ortholog); FOUND IN cilium (ortholog); Golgi apparatus (ortholog) NW_004955424 2082480 2107599 - 102005273 AGCD01024262;GBBH01150506;XM_005385437;XM_005385438;XM_013514628 XP_005385494;XP_005385495;XP_013370082 MODEL 8772847 ncrna LOC102025763 uncharacterized LOC102025763 NW_004955408 14221158 14225938 + 102025763 AGCD01008389;AGCD01008390;GBDF01084978;XR_259685 MODEL 8825357 protein-coding LOC102005403 olfactory receptor 8J3-like NW_004955511 1471770 1480062 + 102005403 AGCD01066369;XM_005407962 XP_005408019 MODEL 8766323 protein-coding Slit3 slit guidance ligand 3 ENCODES a protein that exhibits Roundabout binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); aortic valve morphogenesis (ortholog); apoptotic process involved in luteolysis (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Brain Injuries (ortholog); congenital diaphragmatic hernia (ortholog); FOUND IN cell junction (ortholog); extracellular region (ortholog) NW_004955408 21719487 22322958 - 102012738 AGCD01008562;AGCD01008563;AGCD01008564;AGCD01008565;AGCD01008566;AGCD01008567;AGCD01008568;AGCD01008569;AGCD01008570;AGCD01008571;AGCD01008572;AGCD01008573;GBCE01095441;GBDJ01128089;XM_005376304;XM_013509145;XM_013509153 XP_005376361;XP_013364599;XP_013364607 MODEL 8820311 ncrna LOC102008342 uncharacterized LOC102008342 NW_004955432 20887908 20912192 - 102008342 AGCD01031210;GBDF01207508;XR_261537 MODEL 9021138 protein-coding Rhof ras homolog family member F, filopodia associated INVOLVED IN actin filament organization (ortholog) NW_004955482 6631327 6643634 + 102003447 AGCD01057408;AGCD01057409;GBBH01188779;GBDF01044096;XM_005403257 XP_005403314 MODEL 8933022 protein-coding Bpifc BPI fold containing family C NW_004955405 41376471 41403410 - 102028820 AGCD01005549;GBCC01004323;GBDI01161130;XM_013519152 XP_013374606 MODEL 8884017 pseudo LOC102017527 histone-binding protein RBBP4 pseudogene NW_004955403 47556881 47558928 - 102017527 AGCD01002891 MODEL 9041705 ncrna LOC102010245 uncharacterized LOC102010245 NW_004955468 7542624 7555442 + 102010245 AGCD01052002;GBDF01145028;XR_263402 MODEL 8791558 ncrna LOC102028490 uncharacterized LOC102028490 NW_004955404 34777587 34785494 - 102028490 AGCD01004106;XR_259331 MODEL 10182818 protein-coding Ppp2r3b protein phosphatase 2 regulatory subunit B''beta ENCODES a protein that exhibits calcium-dependent protein serine/threonine phosphatase activity (ortholog); chromatin binding (ortholog); protein phosphatase regulator activity (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); negative regulation of G1/S transition of mitotic cell cycle (ortholog); protein dephosphorylation (ortholog); FOUND IN nucleoplasm (ortholog); protein phosphatase type 2A complex (ortholog) NW_004955499 596146 606079 - 106146859 AGCD01063247;AGCD01063248;AGCD01063249;AGCD01063250;AGCD01063251;GBCB01020000;GBDK01183067;XM_013505589 XP_013361043 MODEL 8722175 protein-coding Rab3ip RAB3A interacting protein ENCODES a protein that exhibits GTPase binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN cilium assembly (ortholog); negative regulation of filopodium assembly (ortholog); protein targeting to membrane (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955405 10031333 10091438 + 102025971 AGCD01004802;AGCD01004803;AGCD01004804;AGCD01004805;AGCD01004806;AGCD01004807;GBBH01082375;GBDF01009098;XM_013517540 XP_013372994 MODEL 8872743 protein-coding Skor1 SKI family transcriptional corepressor 1 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); SMAD binding (ortholog); INVOLVED IN negative regulation of BMP signaling pathway (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog); nucleus (ortholog) NW_004955450 8184843 8195626 - 102005094 AGCD01042563;AGCD01042564;GBDF01124401;XM_013518829 XP_013374283 MODEL 9030847 protein-coding Scrt2 scratch family transcriptional repressor 2 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of neuron migration (ortholog); FOUND IN nucleus (ortholog) NW_004955597 504160 515609 - 102027133 AGCD01076558;AGCD01076559;XM_013510024 XP_013365478 MODEL 39133398 snrna U2 U2 spliceosomal RNA 8941333 protein-coding LOC102028842 olfactory receptor 8D4 NW_004955412 24557873 24558811 + 102028842 AGCD01013117;XM_005378404 XP_005378461 MODEL 8959795 ncrna LOC102006838 uncharacterized LOC102006838 NW_004955445 17445275 17465555 - 102006838 AGCD01039888;AGCD01039889;AGCD01039890;GBDF01307023;XR_001235559;XR_001235560;XR_262346 MODEL 8789674 protein-coding LOC102003666 dnaJ homolog subfamily B member 6-like NW_004955423 9538198 9539071 - 102003666 AGCD01023662;GBDF01008801;XM_013514572 XP_013370026 MODEL 8785016 protein-coding Reck reversion inducing cysteine rich protein with kazal motifs ENCODES a protein that exhibits coreceptor activity (ortholog); endopeptidase inhibitor activity (ortholog); metalloendopeptidase inhibitor activity (ortholog); INVOLVED IN blood vessel maturation (ortholog); canonical Wnt signaling pathway (ortholog); embryo implantation (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); Experimental Liver Cirrhosis (ortholog); glioblastoma (ortholog); FOUND IN plasma membrane (ortholog); plasma membrane raft (ortholog); Wnt signalosome (ortholog) NW_004955472 222261 276869 - 102008717 AGCD01053322;AGCD01053323;GBCE01055236;GBDJ01311384;XM_013523013 XP_013378467 MODEL 8755528 protein-coding LOC102011010 steroid 17-alpha-hydroxylase/17,20 lyase ENCODES a protein that exhibits heme binding (ortholog); steroid 17-alpha-monooxygenase activity (ortholog); INVOLVED IN adrenal gland development (ortholog); androgen biosynthetic process (ortholog); cellular response to antibiotic (ortholog); PARTICIPATES IN 11-beta-hydroxylase deficiency pathway; 17-alpha-hydroxylase deficiency pathway; 21-alpha-hydroxylase deficiency pathway; ASSOCIATED WITH 17,20-Lyase Deficiency, Isolated (ortholog); amenorrhea (ortholog); breast cancer (ortholog); FOUND IN axon (ortholog); cell projection (ortholog); endoplasmic reticulum (ortholog) NW_004955485 7615132 7652899 + 102011010 AGCD01058665;AGCD01058666;AGCD01058667;AGCD01058668;AGCD01058669;GBDF01163210;XM_005403822 XP_005403879 MODEL 9009192 protein-coding Psmb8 proteasome 20S subunit beta 8 INVOLVED IN antigen processing and presentation (ortholog); fat cell differentiation (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN proteasome complex (ortholog); proteasome core complex (ortholog); spermatoproteasome complex (ortholog) NW_004955437 1500477 1504072 - 102022537 AGCD01034212;GBDJ01021170;XM_005389457 XP_005389514 MODEL 8770290 protein-coding Pop1 POP1 ribonuclease P/MRP subunit ENCODES a protein that exhibits ribonuclease P activity (ortholog); ribonuclease P RNA binding (ortholog); INVOLVED IN tRNA 5'-leader removal (ortholog); tRNA decay (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH anauxetic dysplasia 1 (ortholog); anauxetic dysplasia 2 (ortholog); genetic disease (ortholog); FOUND IN multimeric ribonuclease P complex (ortholog); nucleolar ribonuclease P complex (ortholog); nucleolus (ortholog) NW_004955417 13823027 13856448 + 102010157 AGCD01018191;GBCE01138351;XM_005381847 XP_005381904 MODEL 8925285 ncrna LOC102030275 uncharacterized LOC102030275 NW_004955407 38639684 38640467 + 102030275 AGCD01007809;GBDK01324106;XR_259624 MODEL 8933519 protein-coding Septin6 septin 6 INVOLVED IN cytoskeleton organization (ortholog); FOUND IN axon terminus (ortholog); cleavage furrow (ortholog); presynapse (ortholog) NW_004955534 306691 381799 + 102009315 AGCD01070448;GBBH01006609;XM_005410435;XM_005410437;XM_005410438;XM_013507703;XM_013507704;XM_013507705;XM_013507706 XP_005410492;XP_005410494;XP_005410495;XP_013363157;XP_013363158;XP_013363159;XP_013363160 MODEL 9027873 pseudo LOC102021601 nuclear receptor coactivator 1-like NW_004955546 2922210 2926579 + 102021601 AGCD01072106 MODEL 150537135 snorna SNORD9 small nucleolar RNA, C/D box 9 8877296 protein-coding Pla2g4a phospholipase A2 group IVA ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); calcium ion binding (ortholog); INVOLVED IN arachidonate metabolic process (ortholog); arachidonate secretion (ortholog); cellular response to antibiotic (ortholog); PARTICIPATES IN cyclooxygenase mediated pathway of arachidonic acid metabolism; endothelin signaling pathway; Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); amyotrophic lateral sclerosis (ortholog); asthma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955406 25257361 25392079 + 102014413 AGCD01006223;AGCD01006224;AGCD01006225;AGCD01006226;AGCD01006227;AGCD01006228;AGCD01006229;AGCD01006230;GBCE01023640;XM_005375092;XM_013521775 XP_005375149;XP_013377229 MODEL 8874000 protein-coding Bpnt1 3'(2'), 5'-bisphosphate nucleotidase 1 ENCODES a protein that exhibits 3'(2'),5'-bisphosphate nucleotidase activity (ortholog); inositol-1,4-bisphosphate 1-phosphatase activity (ortholog); magnesium ion binding (ortholog); PARTICIPATES IN sulfite oxidase deficiency pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); FOUND IN mitochondrion (ortholog) NW_004955520 3521096 3543255 + 102023516 AGCD01068105;GBDF01128212;XM_005409271;XM_005409272;XM_005409273;XM_005409274;XM_005409275;XR_264596 XP_005409328;XP_005409329;XP_005409330;XP_005409331;XP_005409332 MODEL 8972827 ncrna LOC102026136 uncharacterized LOC102026136 NW_004955429 1663661 1673828 + 102026136 AGCD01028404;GBDF01115959;XR_001234483;XR_261311 MODEL 8701900 ncrna LOC102024345 uncharacterized LOC102024345 NW_004955421 2482992 2490133 - 102024345 AGCD01021630;AGCD01021631;GBDF01236551;XR_260784 MODEL 9021950 pseudo LOC102010247 S-phase kinase-associated protein 1 pseudogene NW_004955413 5920746 5923360 + 102010247 AGCD01013695 MODEL 9030983 protein-coding Sncaip synuclein alpha interacting protein ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN dopamine metabolic process (ortholog); regulation of inclusion body assembly (ortholog); regulation of neurotransmitter secretion (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); Parkinson's disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog) NW_004955521 410270 548691 + 102006601 AGCD01068137;AGCD01068138;AGCD01068139;GBCE01085088;XM_005409289;XM_005409291;XM_005409292;XM_005409293;XM_005409294;XM_005409297;XM_005409299;XM_005409301;XM_013507091 XP_005409346;XP_005409348;XP_005409349;XP_005409350;XP_005409351;XP_005409354;XP_005409356;XP_005409358;XP_013362545 MODEL 8721971 protein-coding Lgals8 galectin 8 ENCODES a protein that exhibits carbohydrate binding (ortholog); integrin binding (ortholog); INVOLVED IN cellular response to virus (ortholog); lymphatic endothelial cell migration (ortholog); plasma cell differentiation (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955492 3673233 3693777 - 102017993 AGCD01060699;GBBH01093652;XM_005404932;XM_005404934;XM_005404935;XM_005404936;XM_013504707;XM_013504708;XM_013504709 XP_005404989;XP_005404991;XP_005404992;XP_005404993;XP_013360161;XP_013360162;XP_013360163 MODEL 8856865 protein-coding Rhog ras homolog family member G ENCODES a protein that exhibits GTPase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); activation of GTPase activity (ortholog); cell chemotaxis (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955414 19630564 19641722 - 102010894 AGCD01015326;GBCE01032932;XM_005380036;XM_005380037 XP_005380093;XP_005380094 MODEL 8969714 protein-coding LOC102023343 putative olfactory receptor 10D4 NW_004955412 24784274 24785062 + 102023343 AGCD01013125;XM_005378637 XP_005378694 MODEL 8988706 protein-coding Trex1 three prime repair exonuclease 1 ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); 3'-5'-DNA exonuclease activity (ortholog); adenyl deoxyribonucleotide binding (ortholog); INVOLVED IN activation of immune response (ortholog); adaptive immune response (ortholog); apoptotic cell clearance (ortholog); PARTICIPATES IN DNA replication pathway; G2/M DNA damage checkpoint pathway; ASSOCIATED WITH Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 1 (ortholog); brain disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955532 533877 535767 + 102025941 AGCD01070130;GBBH01050782;XM_005410151 XP_005410208 MODEL 10159557 protein-coding LOC106147055 uncharacterized LOC106147055 NW_004955514 213278 214707 - 106147055 AGCD01067001;GBDI01016081;XM_013506750 XP_013362204 MODEL 8726489 pseudo LOC102027155 septin-7-like NW_004955463 14303925 14306398 + 102027155 AGCD01049906 MODEL 8779851 protein-coding Pdcd2l programmed cell death 2 like NW_004955468 4011644 4027481 + 102004799 AGCD01051880;AGCD01051881;AGCD01051882;GBDF01291975;XM_005400004 XP_005400061 MODEL 8874230 ncrna LOC102015615 uncharacterized LOC102015615 NW_004955463 3590647 3599119 - 102015615 AGCD01049591;XR_263144 MODEL 8858332 protein-coding Ptprs protein tyrosine phosphatase receptor type S ENCODES a protein that exhibits chondroitin sulfate binding (ortholog); heparin binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN cerebellum development (ortholog); cerebral cortex development (ortholog); corpus callosum development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Hearing Loss (ortholog); NATURAL KILLER CELL ENTEROPATHY (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog); postsynaptic density (ortholog) NW_004955495 3943075 3991361 + 102029307 AGCD01061889;AGCD01061890;AGCD01061891;AGCD01061892;AGCD01061893;GBCB01088757;GBDF01128475;XM_013505293 XP_013360747 MODEL 10377279 protein-coding LOC106149896 polycystic kidney disease protein 1-like 1 NW_004955456 5478010 5496105 + 106149896 AGCD01046330;AGCD01046331;AGCD01046332;GBDI01253281;XM_013520638 XP_013376092 MODEL 8772552 ncrna LOC102006486 uncharacterized LOC102006486 NW_004955429 12941851 12943908 - 102006486 AGCD01028733;GBDI01366543;XR_261327 MODEL 10256221 ncrna LOC106148147 uncharacterized LOC106148147 NW_004955416 27067440 27128350 + 106148147 AGCD01017610;GBDF01305054;XR_001233322 MODEL 8966792 protein-coding Togaram2 TOG array regulator of axonemal microtubules 2 ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); Hearing Loss (ortholog) NW_004955469 10860710 10910293 + 102016798 AGCD01052552;GBDI01259936;XM_005400540;XM_013522669 XP_005400597;XP_013378123 MODEL 8930116 protein-coding Tgm3 transglutaminase 3 ENCODES a protein that exhibits calcium ion binding (ortholog); catalytic activity (ortholog); protein-glutamine gamma-glutamyltransferase activity (ortholog); INVOLVED IN keratinocyte differentiation (ortholog); peptide cross-linking (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Uncombable Hair Syndrome (ortholog); Uncombable Hair Syndrome 2 (ortholog); FOUND IN cytoplasm (ortholog); extrinsic component of cytoplasmic side of plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955415 13391857 13435342 + 102014351 AGCD01016247;AGCD01016248;AGCD01016249;GBDI01257144;XM_005380750 XP_005380807 MODEL 8921114 protein-coding Parg poly(ADP-ribose) glycohydrolase ENCODES a protein that exhibits chromatin binding (ortholog); poly(ADP-ribose) glycohydrolase activity (ortholog); INVOLVED IN ATP generation from poly-ADP-D-ribose (ortholog); detection of bacterium (ortholog); DNA damage response (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH borna disease (ortholog); brain infarction (ortholog); Embryo Loss (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955556 435264 539935 + 102026268 AGCD01073175;AGCD01073176;GBDF01089037;XM_005412559;XM_005412563;XM_013508787;XM_013508788 XP_005412616;XP_005412620;XP_013364241;XP_013364242 MODEL 8927755 protein-coding Rsrc1 arginine and serine rich coiled-coil 1 INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); mRNA splicing, via spliceosome (ortholog); nucleocytoplasmic transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive intellectual developmental disorder 70 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955448 8947553 9249465 + 102025411 AGCD01041456;AGCD01041457;AGCD01041458;AGCD01041459;AGCD01041460;AGCD01041461;AGCD01041462;AGCD01041463;AGCD01041464;AGCD01041465;AGCD01041466;AGCD01041467;XM_013518587 XP_013374041 MODEL 9024009 ncrna LOC102009454 uncharacterized LOC102009454 NW_004955452 11752081 11769463 + 102009454 AGCD01044343;GBCB01079032;XR_262680 MODEL 8870400 pseudo LOC102011391 dnaJ homolog subfamily B member 6-like NW_004955451 11366508 11386075 + 102011391 AGCD01043350;AGCD01043351;AGCD01043352 MODEL 8928379 protein-coding Rasgef1b RasGEF domain family member 1B ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); ASSOCIATED WITH COVID-19 (ortholog); systemic juvenile rheumatoid arthritis (ortholog) NW_004955433 5605548 6388880 - 102030339 AGCD01031513;AGCD01031514;AGCD01031515;AGCD01031516;AGCD01031517;AGCD01031518;AGCD01031519;AGCD01031520;AGCD01031521;AGCD01031522;AGCD01031523;AGCD01031524;AGCD01031525;AGCD01031526;AGCD01031527;AGCD01031528;AGCD01031529;AGCD01031530;AGCD01031531;AGCD01031532;AGCD01031533;GBCE01011897;XM_005388230;XM_005388233;XM_005388234;XM_013516120;XM_013516121 XP_005388287;XP_005388290;XP_005388291;XP_013371574;XP_013371575 MODEL 8800654 ncrna LOC102012650 uncharacterized LOC102012650 NW_004955418 28431582 28460778 - 102012650 AGCD01019438;AGCD01019439;GBDI01285082;XR_001233482;XR_260593 MODEL 8851986 ncrna LOC102018682 uncharacterized LOC102018682 NW_004955405 39905538 39909717 + 102018682 AGCD01005503;GBDJ01111460;XR_259449 MODEL 8787567 protein-coding Vwa5a von Willebrand factor A domain containing 5A FOUND IN nucleoplasm (ortholog) NW_004955412 24850301 24874498 + 102003105 AGCD01013130;GBBH01115484;XM_005378408;XM_005378409 XP_005378465;XP_005378466 MODEL 8993252 protein-coding LOC102005404 olfactory receptor 5L1-like NW_004955511 647139 648068 + 102005404 AGCD01066337;XM_005408203 XP_005408260 MODEL 8873254 pseudo LOC102023346 40S ribosomal protein S24 pseudogene NW_004955413 27173334 27173770 - 102023346 AGCD01014497 MODEL 8890822 protein-coding Eln elastin ENCODES a protein that exhibits extracellular matrix binding (ortholog); extracellular matrix constituent conferring elasticity (ortholog); INVOLVED IN aorta development (ortholog); aortic valve morphogenesis (ortholog); blood vessel remodeling (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Anetoderma (ortholog); aortic aneurysm (ortholog); FOUND IN elastic fiber (ortholog); extracellular region (ortholog) NW_004955456 13788992 13818836 - 102020983 AGCD01046622;AGCD01046623;GBDF01022221;XM_013520582;XM_013520583;XM_013520584;XM_013520585;XM_013520586;XM_013520587;XM_013520588;XM_013520589;XM_013520590;XM_013520591;XM_013520592;XM_013520593 XP_013376036;XP_013376037;XP_013376038;XP_013376039;XP_013376040;XP_013376041;XP_013376042;XP_013376043;XP_013376044;XP_013376045;XP_013376046;XP_013376047 MODEL 9001818 protein-coding LOC102019060 intercellular adhesion molecule 5-like NW_004955478 7958977 7970345 - 102019060 AGCD01056003;GBDK01346127;XM_005402181;XM_005402182;XM_013503152;XM_013503154;XM_013503155;XM_013503156 XP_005402238;XP_005402239;XP_013358606;XP_013358608;XP_013358609;XP_013358610 MODEL 8707153 protein-coding Slitrk1 SLIT and NTRK like family member 1 INVOLVED IN adult behavior (ortholog); axonogenesis (ortholog); endocytosis (ortholog); ASSOCIATED WITH Gilles de la Tourette syndrome (ortholog); trichotillomania (ortholog); FOUND IN extracellular region (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog) NW_004955404 24436394 24439749 + 102005990 AGCD01003820;XM_005374122 XP_005374179 MODEL 8845519 protein-coding LOC102006839 zinc finger protein 709-like NW_004955569 1394409 1414793 + 102006839 AGCD01074651;AGCD01074652;AGCD01074653;AGCD01074654;GBDF01150811;XM_005413501 XP_005413558 MODEL 8790518 pseudo LOC102010631 ras-related protein Rab-18 pseudogene NW_004955438 11389072 11389615 - 102010631 AGCD01035237 MODEL 8870073 protein-coding Slc39a7 solute carrier family 39 member 7 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN B cell differentiation (ortholog); intracellular zinc ion homeostasis (ortholog); regulation of ferroptosis (ortholog); ASSOCIATED WITH agammaglobulinemia 9 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955437 1774301 1778092 + 102027785 AGCD01034233;GBDF01119218;XM_005389473;XM_013516972 XP_005389530;XP_013372426 MODEL 8769442 protein-coding LOC102027158 calreticulin-like NW_004955464 7446068 7511010 + 102027158 AGCD01050060;AGCD01050061;AGCD01050062;AGCD01050063;GBDF01245258;XM_005398776 XP_005398833 MODEL 8810372 ncrna LOC102006489 uncharacterized LOC102006489 NW_004955432 19124642 19126210 + 102006489 AGCD01031169;GBDI01387174;XR_261535 MODEL 8987697 protein-coding Procr protein C receptor INVOLVED IN negative regulation of coagulation (ortholog); PARTICIPATES IN protease mediated signaling via protease-activated receptor 1; protein C anticoagulant pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); acute kidney failure (ortholog); Acute Lung Injury (ortholog); FOUND IN centrosome (ortholog); extracellular region (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955422 26215757 26220396 - 102014795 AGCD01023281;AGCD01023282;GBBH01160494;GBDK01431932;XM_013514115 XP_013369569 MODEL 10329840 ncrna LOC106148148 uncharacterized LOC106148148 NW_004955416 8737055 8757596 + 106148148 AGCD01017065;GBDF01254664;XR_001233323;XR_001233324;XR_001233325 MODEL 8714409 ncrna LOC102028496 uncharacterized LOC102028496 NW_004955455 5114049 5163486 + 102028496 AGCD01045718;AGCD01045719;GBDF01044531;XR_001236287;XR_001236288;XR_001236289 MODEL 8783802 ncrna LOC102021603 uncharacterized LOC102021603 NW_004955442 5816330 5828896 + 102021603 AGCD01037570;XR_262117 MODEL 39131707 snorna SNORD90 small nucleolar RNA, C/D box 90 8789524 ncrna LOC102025766 uncharacterized LOC102025766 NW_004955409 12704983 12718264 - 102025766 AGCD01009556;AGCD01009557;GBDI01037854;XR_001232650;XR_259777 MODEL 8903192 pseudo LOC102024346 UPF0538 protein C2orf76 homolog pseudogene NW_004955489 2537117 2537685 + 102024346 AGCD01059871;XM_005404539 MODEL 8804149 pseudo LOC102008343 40S ribosomal protein S6 pseudogene NW_004955515 3520030 3520862 + 102008343 AGCD01067288 MODEL 8897228 protein-coding Pla2g4b phospholipase A2 group IVB ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); glycerophospholipid phospholipase A1 activity (ortholog); phosphatidylcholine lysophospholipase A1 activity (ortholog); INVOLVED IN glycerophospholipid catabolic process (ortholog); phosphatidylcholine acyl-chain remodeling (ortholog); phosphatidylethanolamine acyl-chain remodeling (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; alpha-linolenic acid metabolic pathway; antipyrine drug pathway; ASSOCIATED WITH colorectal cancer (ortholog); FOUND IN cytosol (ortholog); early endosome membrane (ortholog); mitochondrial inner membrane (ortholog) NW_004955416 8633249 8643219 + 102014353 AGCD01017064;GBDI01327602;XM_013512524 XP_013367978 MODEL 8999985 protein-coding Skor2 SKI family transcriptional corepressor 2 ENCODES a protein that exhibits chromatin binding (ortholog); histone deacetylase binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell development (ortholog); cerebellar Purkinje cell differentiation (ortholog); cerebellum morphogenesis (ortholog); ASSOCIATED WITH Dysarthria (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955402 32577189 32618611 - 102027366 AGCD01000826;AGCD01000827;GBDF01021613;XM_013510345 XP_013365799 MODEL 8812474 protein-coding Ppp2r3c protein phosphatase 2 regulatory subunit B''gamma INVOLVED IN activation of protein kinase activity (ortholog); B cell homeostasis (ortholog); positive regulation of B cell differentiation (ortholog); ASSOCIATED WITH Myoectodermal Gonadal Dysgenesis Syndrome (ortholog); spermatogenic failure 36 (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955409 25920973 25943985 + 102030609 AGCD01010141;AGCD01010142;AGCD01010143;GBDF01005289;XM_005376927;XM_005376928;XM_013510375 XP_005376984;XP_005376985;XP_013365829 MODEL 10154685 ncrna LOC106147056 uncharacterized LOC106147056 NW_004955402 18792269 18825888 - 106147056 AGCD01000540;GBDI01034192;XR_001231763;XR_001231772;XR_001231775;XR_001231782;XR_001231786;XR_001231793;XR_001231799 MODEL 8927468 protein-coding Sncb synuclein beta ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); calcium ion binding (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); dopamine metabolic process (ortholog); negative regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH acute megakaryocytic leukemia (ortholog); Alzheimer's disease (ortholog); Brain Injuries (ortholog); FOUND IN axon terminus (ortholog); growth cone (ortholog); inclusion body (ortholog) NW_004955408 28894204 28903095 - 102015380 AGCD01008733;GBDI01245052;XM_005376395 XP_005376452 MODEL 8880456 protein-coding Rab40b RAB40B, member RAS oncogene family ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN cellular detoxification (ortholog); negative regulation of actin filament bundle assembly (ortholog); positive regulation of cell migration (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); lamellipodium (ortholog); lamellipodium membrane (ortholog) NW_004955506 480236 509038 + 102006261 AGCD01065228;AGCD01065229;AGCD01065230;GBDI01219730;XM_005407186 XP_005407243 MODEL 8785823 protein-coding LOC102017529 uncharacterized LOC102017529 NW_004955404 1839048 1853901 - 102017529 AGCD01003231;GBCE01108327;XM_013516796 XP_013372250 MODEL 8994969 ncrna LOC102011013 uncharacterized LOC102011013 NW_004955487 9073542 9074205 + 102011013 AGCD01059449;AGCD01059450;GBDF01127916;XR_263991 MODEL 10126340 ncrna LOC106149897 uncharacterized LOC106149897 NW_004955456 9449081 9464760 - 106149897 AGCD01046510;GBDF01306056;XR_001236363;XR_001236364 MODEL 8943518 pseudo LOC102027828 chromobox protein homolog 3-like NW_004955465 11029469 11030103 + 102027828 AGCD01050519 MODEL 8834093 protein-coding Psmb9 proteasome 20S subunit beta 9 ENCODES a protein that exhibits proteasome binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); cellular response to electrical stimulus (ortholog); cellular response to interleukin-1 (ortholog); ASSOCIATED WITH acrodermatitis (ortholog); adult respiratory distress syndrome (ortholog); ankylosing spondylitis (ortholog); FOUND IN cytosol (ortholog); proteasome complex (ortholog); proteasome core complex (ortholog) NW_004955437 1513425 1516164 + 102023191 AGCD01034213;GBBH01002903;GBCB01109043;XM_005389459 XP_005389516 MODEL 8734022 protein-coding LOC102030277 AMMECR1-like protein NW_004955456 15828827 15837002 + 102030277 AGCD01046675;AGCD01046676;AGCD01046677;XM_005396874 XP_005396931 MODEL 9024922 protein-coding Pop4 POP4 ribonuclease P/MRP subunit ENCODES a protein that exhibits ribonuclease P activity (ortholog); ribonuclease P RNA binding (ortholog); INVOLVED IN tRNA 5'-leader removal (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN multimeric ribonuclease P complex (ortholog); nucleolar ribonuclease P complex (ortholog); nucleolus (ortholog) NW_004955468 7983394 7994863 - 102012524 AGCD01052018;GBDI01104355;XM_005400112;XM_005400113;XM_005400114;XM_005400115 XP_005400169;XP_005400170;XP_005400171;XP_005400172 MODEL 8711048 protein-coding Tollip toll interacting protein ENCODES a protein that exhibits interleukin-1, type I receptor binding (ortholog); kinase binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN epithelial cell differentiation (ortholog); interleukin-1-mediated signaling pathway (ortholog); phosphorylation (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; ASSOCIATED WITH chronic obstructive pulmonary disease (ortholog); COVID-19 (ortholog); idiopathic pulmonary fibrosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955476 10987223 11009134 + 102004475 AGCD01055434;AGCD01055435;GBDF01003680;XM_005401793 XP_005401850 MODEL 9055942 protein-coding LOC102026137 olfactory receptor 1013-like NW_004955511 1851605 1852540 - 102026137 AGCD01066381;XM_005408246 XP_005408303 MODEL 8983901 protein-coding LOC102010250 mitochondrial ornithine transporter 2 NW_004955415 12462640 12463852 + 102010250 AGCD01016197;GBDF01083463;XM_005380737 XP_005380794 MODEL 8892808 protein-coding Park7 Parkinsonism associated deglycase ENCODES a protein that exhibits copper ion binding (ortholog); cupric ion binding (ortholog); cuprous ion binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); androgen receptor signaling pathway (ortholog); cellular detoxification of aldehyde (ortholog); PARTICIPATES IN Parkinson's disease pathway; transforming growth factor-beta signaling pathway; ASSOCIATED WITH amyotrophic lateral sclerosis-parkinsonism/dementia complex 1 (ortholog); cerebral infarction (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN axon (ortholog); cell body (ortholog); chromatin (ortholog) NW_004955486 4974130 4985927 - 102003027 AGCD01059074;GBCB01086937;XM_005404061;XM_005404062;XM_005404063;XM_005404064 XP_005404118;XP_005404119;XP_005404120;XP_005404121 MODEL 8996401 protein-coding LOC102009461 immunoglobulin omega chain-like NW_004955455 6648451 6649016 + 102009461 AGCD01045803;XM_005396575 XP_005396632 MODEL 8867141 protein-coding Rasgef1c RasGEF domain family member 1C NW_004955408 482107 515132 + 102008190 AGCD01007922;AGCD01007923;GBBH01010353;XM_013507276 XP_013362730 MODEL 8710288 ncrna LOC102028843 uncharacterized LOC102028843 NW_004955466 11746935 11749866 - 102028843 AGCD01051100;GBDF01160432;XR_263313 MODEL 8923815 protein-coding LOC102003667 phylloquinone omega-hydroxylase CYP4F2-like NW_004955495 7690774 7703651 - 102003667 AGCD01062160;GBDI01129621;XM_013505322;XM_013505323 XP_013360776;XP_013360777 MODEL 8756869 protein-coding Pdcd4 programmed cell death 4 INVOLVED IN BMP signaling pathway (ortholog); cellular response to lipopolysaccharide (ortholog); epithelial to mesenchymal transition involved in cardiac fibroblast development (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH Arterial Injury (ortholog); Lung Neoplasms (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955485 530642 553508 - 102013417 AGCD01058452;AGCD01058453;GBCC01022030;XM_005403745;XM_005403747 XP_005403802;XP_005403804 MODEL 8913573 protein-coding Recql RecQ like helicase ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); ATP hydrolysis activity (ortholog); DNA helicase activity (ortholog); INVOLVED IN replication fork processing (ortholog); ASSOCIATED WITH Breast Cancer, Familial (ortholog); Breast Neoplasms (ortholog); cancer (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955413 17115443 17148708 - 102017214 AGCD01014129;AGCD01014130;GBCQ01179121;XM_005379058;XM_013511493 XP_005379115;XP_013366947 MODEL 8968185 ncrna LOC102010634 uncharacterized LOC102010634 NW_004955440 18844372 18859013 - 102010634 AGCD01036623;GBDF01150944;XR_262045 MODEL 9063594 protein-coding Septin7 septin 7 ENCODES a protein that exhibits AP-3 adaptor complex binding (ortholog); identical protein binding (ortholog); structural constituent of postsynapse (ortholog); INVOLVED IN collateral sprouting (ortholog); cortical cytoskeleton organization (ortholog); cytoskeleton organization (ortholog); FOUND IN actin cytoskeleton (ortholog); axon terminus (ortholog); axoneme (ortholog) NW_004955460 7287452 7374747 - 102005571 AGCD01048480;GBCE01002152;XM_005397770;XM_005397771;XM_013521220 XP_005397827;XP_005397828;XP_013376674 MODEL 8741740 protein-coding LOC102019064 40S ribosomal protein S4, X isoform-like NW_004955484 2005024 2008857 + 102019064 AGCD01058077;GBDF01007579;XM_005403440 XP_005403497 MODEL 39133400 snrna U2 U2 spliceosomal RNA 8781787 protein-coding LOC102027163 zinc finger protein 850-like NW_004955468 1623956 1748535 + 102027163 AGCD01051778;AGCD01051779;AGCD01051780;GBDI01208707;XM_005399890 XP_005399947 MODEL 8875480 protein-coding Tgm4 transglutaminase 4 INVOLVED IN mating plug formation (ortholog); ASSOCIATED WITH essential tremor (ortholog); FOUND IN cytoplasm (ortholog); extracellular matrix (ortholog); Golgi apparatus (ortholog) NW_004955420 26736880 26766386 - 102010493 AGCD01021427;AGCD01021428;AGCD01021429;AGCD01021430;GBDI01171952;GBDJ01424037;XM_005383619 XP_005383676 MODEL 8933502 protein-coding Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 ENCODES a protein that exhibits 3',5'-nucleotide bisphosphate phosphatase activity (ortholog); 3'-nucleotidase activity (ortholog); INVOLVED IN chondrocyte development (ortholog); chondroitin sulfate proteoglycan metabolic process (ortholog); embryonic digit morphogenesis (ortholog); ASSOCIATED WITH chondrodysplasia with joint dislocations gPAPP type (ortholog); osteochondrodysplasia (ortholog); FOUND IN Golgi apparatus (ortholog); trans-Golgi network membrane (ortholog) NW_004955454 15899820 15918222 - 102007970 AGCD01045497;AGCD01045498;GBDF01119202;GBDK01128450;XM_013520210;XM_013520211 XP_013375664;XP_013375665 MODEL 8724722 ncrna LOC102011392 uncharacterized LOC102011392 NW_004955404 682584 698750 + 102011392 AGCD01003207;XR_259283 MODEL 8859263 protein-coding Lgals9 galectin 9 ENCODES a protein that exhibits carbohydrate binding (ortholog); disaccharide binding (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to type II interferon (ortholog); cellular response to virus (ortholog); ERK1 and ERK2 cascade (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); nephritis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955481 5234125 5249564 - 102011003 AGCD01056965;GBDI01000534;XM_013503499;XM_013503501;XM_013503502;XM_013503503;XM_013503504;XM_013503505;XM_013503506;XM_013503507;XM_013503508 XP_013358953;XP_013358955;XP_013358956;XP_013358957;XP_013358958;XP_013358959;XP_013358960;XP_013358961;XP_013358962 MODEL 10133496 protein-coding LOC106148149 uncharacterized LOC106148149 NW_004955416 18993175 18995143 - 106148149 AGCD01017414;XM_013512529 XP_013367983 MODEL 8791883 protein-coding LOC102012651 olfactory receptor 5V1-like NW_004955418 30263575 30290368 + 102012651 AGCD01019508;AGCD01019509;AGCD01019510;AGCD01019511;XM_005382371 XP_005382428 MODEL 151707878 snorna SNORD92 small nucleolar RNA, C/D box 92 8827585 pseudo LOC102024347 serine/arginine-rich splicing factor 10 pseudogene NW_004955490 1469012 1472222 + 102024347 AGCD01060108;AGCD01060109 MODEL 8842271 protein-coding Pop5 POP5 ribonuclease P/MRP subunit ENCODES a protein that exhibits ribonuclease P activity (ortholog); ribonuclease P RNA binding (ortholog); INVOLVED IN tRNA 5'-leader removal (ortholog); tRNA processing (ortholog); PARTICIPATES IN tRNA maturation pathway; FOUND IN multimeric ribonuclease P complex (ortholog); nucleolar ribonuclease P complex (ortholog); nucleolus (ortholog) NW_004955455 11069131 11071814 + 102008497 AGCD01045978;GBCE01034142;XM_005396499 XP_005396556 MODEL 8913267 protein-coding LOC102005406 uncharacterized LOC102005406 NW_004955514 858595 900031 - 102005406 AGCD01067024;AGCD01067025;GBBH01100117;XM_013506745 XP_013362199 MODEL 8748447 pseudo LOC102023347 60S ribosomal protein L7 pseudogene NW_004955468 12719078 12719903 + 102023347 AGCD01052184;XM_005400226 MODEL 8722832 protein-coding Eloa elongin A INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); transcription elongation by RNA polymerase II (ortholog); transcription initiation at RNA polymerase II promoter (ortholog); FOUND IN elongin complex (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955452 3668868 3681506 + 102018252 AGCD01043934;GBDF01087483;XM_013519496 XP_013374950 MODEL 9024498 protein-coding Ptprt protein tyrosine phosphatase receptor type T ENCODES a protein that exhibits alpha-actinin binding (ortholog); alpha-catenin binding (ortholog); beta-catenin binding (ortholog); INVOLVED IN cell surface receptor protein tyrosine kinase signaling pathway (ortholog); cellular response to interleukin-6 (ortholog); homophilic cell-cell adhesion (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); colon cancer (ortholog); FOUND IN cell surface (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955445 14185751 14961000 + 102026919 AGCD01039812;AGCD01039813;AGCD01039814;AGCD01039815;AGCD01039816;AGCD01039817;AGCD01039818;AGCD01039819;AGCD01039820;AGCD01039821;AGCD01039822;AGCD01039823;AGCD01039824;AGCD01039825;AGCD01039826;AGCD01039827;AGCD01039828;GBCE01157673;XM_005392501;XM_013518366 XP_005392558;XP_013373820 MODEL 9049508 protein-coding Slitrk2 SLIT and NTRK like family member 2 INVOLVED IN axonogenesis (ortholog); positive regulation of synapse assembly (ortholog); regulation of presynapse assembly (ortholog); ASSOCIATED WITH intellectual disability (ortholog); non-syndromic X-linked intellectual developmental disorder 111 (ortholog); FOUND IN dendrite (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog) NW_004955585 479798 488046 - 102004218 AGCD01075997;GBDK01170292;XM_005414427;XM_005414428;XM_005414430;XM_005414431;XM_013509886 XP_005414484;XP_005414485;XP_005414487;XP_005414488;XP_013365340 MODEL 8932356 protein-coding Sct secretin ENCODES a protein that exhibits digestive hormone activity (ortholog); G protein-coupled receptor binding (ortholog); hormone activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); dentate gyrus development (ortholog); diet induced thermogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); choledochal cyst (ortholog); polycystic ovary syndrome (ortholog); FOUND IN extracellular region (ortholog) NW_004955476 11433857 11434662 + 102011984 AGCD01055458;GBDF01151931;XM_005401907 XP_005401964 MODEL 10238139 protein-coding LOC106149898 uncharacterized LOC106149898 NW_004955456 13865208 13938399 - 106149898 AGCD01046626;AGCD01046627;AGCD01046628;AGCD01046629;XM_013520652 XP_013376106 MODEL 8894688 protein-coding Sncg synuclein gamma ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); aggressive behavior (ortholog); cellular response to hydrostatic pressure (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); centrosome (ortholog) NW_004955510 5958276 5961719 + 102011687 AGCD01066297;GBDJ01020114;XM_005407908;XM_013506329 XP_005407965;XP_013361783 MODEL 8890226 protein-coding Trex2 three prime repair exonuclease 2 ENCODES a protein that exhibits 3'-5'-DNA exonuclease activity (ortholog); DNA binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN DNA metabolic process (ortholog); ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); intellectual disability (ortholog) NW_004955580 207903 209426 - 102010534 AGCD01075591;GBDF01123808;XM_005414119 XP_005414176 MODEL 8821472 protein-coding Rhoh ras homolog family member H ENCODES a protein that exhibits GTP binding (ortholog); kinase inhibitor activity (ortholog); INVOLVED IN mast cell activation (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of T cell differentiation (ortholog); ASSOCIATED WITH coronin-1A deficiency (ortholog); immunodeficiency 129 (ortholog); FOUND IN cytoplasm (ortholog); immunological synapse (ortholog); plasma membrane (ortholog) NW_004955443 7227751 7269984 - 102019443 AGCD01038274;AGCD01038275;GBBH01183545;XM_005391959;XM_005391960;XM_005391961;XM_005391962;XM_013518115;XM_013518116 XP_005392016;XP_005392017;XP_005392018;XP_005392019;XP_013373569;XP_013373570 MODEL 9055329 ncrna LOC102021610 uncharacterized LOC102021610 NW_004955447 10979457 11045604 - 102021610 AGCD01040895;AGCD01040896;AGCD01040897;AGCD01040898;AGCD01040899;GBCB01088708;XR_262419 MODEL 8958681 pseudo LOC102018687 translationally-controlled tumor protein pseudogene NW_004955454 7152912 7153484 - 102018687 AGCD01045283;XM_005396028 MODEL 8716428 protein-coding LOC102025767 cytochrome c-like NW_004955460 9853014 9853345 - 102025767 AGCD01048556;XM_005397827 XP_005397884 MODEL 8734368 protein-coding LOC102015618 apolipoprotein L3-like NW_004955413 22612905 22623535 + 102015618 AGCD01014309;GBDI01367440;XM_005379148 XP_005379205 MODEL 10189812 ncrna LOC106148150 uncharacterized LOC106148150 NW_004955416 26588206 26594738 + 106148150 AGCD01017599;GBCB01030460;XR_001233328 MODEL 9043073 pseudo LOC102008345 phosducin-like protein 3 pseudogene NW_004955434 11550951 11551673 + 102008345 AGCD01032380 MODEL 9051992 pseudo LOC102009463 cordon-bleu protein-like 1 NW_004955407 25359436 25360666 + 102009463 AGCD01007501 MODEL 10301189 protein-coding LOC106147057 uncharacterized LOC106147057 NW_004955514 1082367 1083540 - 106147057 AGCD01067036;GBDF01251435;XM_013506766 XP_013362220 MODEL 8769827 ncrna LOC102017530 uncharacterized LOC102017530 NW_004955452 3571075 3600205 + 102017530 AGCD01043930;AGCD01043931;GBDI01141659;XR_001236010;XR_262646 MODEL 8723486 protein-coding Ppp2r5a protein phosphatase 2 regulatory subunit B'alpha ENCODES a protein that exhibits kinase binding (ortholog); kinase inhibitor activity (ortholog); protein phosphatase activator activity (ortholog); INVOLVED IN negative regulation of protein localization to plasma membrane (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Emphysema (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955406 5059826 5115312 - 102014416 AGCD01005711;GBDK01003948;XM_005375450 XP_005375507 MODEL 8941360 protein-coding Rsrc2 arginine and serine rich coiled-coil 2 ASSOCIATED WITH obesity (ortholog) NW_004955482 6119810 6138984 + 102029182 AGCD01057374;GBDF01053615;XM_005403076;XM_005403077;XM_013503706 XP_005403133;XP_005403134;XP_013359160 MODEL 8734890 protein-coding LOC102006842 arylacetamide deacetylase-like NW_004955448 3066739 3077788 + 102006842 AGCD01041301;GBDJ01144113;XM_005393038 XP_005393095 MODEL 8960601 pseudo LOC102011014 60S ribosomal protein L32 pseudogene NW_004955422 28865640 28866566 + 102011014 AGCD01023372 MODEL 8927681 protein-coding Slc39a8 solute carrier family 39 member 8 ENCODES a protein that exhibits monoatomic cation:bicarbonate symporter activity (ortholog); zinc:bicarbonate symporter activity (ortholog); INVOLVED IN arginine metabolic process (ortholog); bicarbonate transport (ortholog); cadmium ion transmembrane transport (ortholog); PARTICIPATES IN iron uptake pathway; ASSOCIATED WITH congenital disorder of glycosylation type IIn (ortholog); Crohn's disease (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); lysosomal membrane (ortholog) NW_004955496 6016727 6106965 + 102019081 AGCD01062360;AGCD01062361;AGCD01062362;GBCQ01124663;GBDI01181151;XM_013505413;XM_013505414 XP_013360867;XP_013360868 MODEL 8723097 ncrna LOC102027832 uncharacterized LOC102027832 NW_004955413 25164415 25208404 + 102027832 AGCD01014397;AGCD01014398;AGCD01014399;XR_260110 MODEL 8832094 protein-coding Pdcd5 programmed cell death 5 ENCODES a protein that exhibits acetyltransferase activator activity (ortholog); beta-tubulin binding (ortholog); heparin binding (ortholog); INVOLVED IN cellular response to transforming growth factor beta stimulus (ortholog); negative regulation of protein folding (ortholog); positive regulation of apoptotic process (ortholog); FOUND IN nucleus (ortholog) NW_004955468 5365137 5372888 - 102003429 AGCD01051964;GBDI01331804;XM_005400088 XP_005400145 MODEL 8699845 protein-coding Prodh2 proline dehydrogenase 2 ENCODES a protein that exhibits oxidoreductase activity, acting on the CH-NH group of donors (ortholog); oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor (ortholog); proline dehydrogenase activity (ortholog); INVOLVED IN trans-4-hydroxy-L-proline catabolic process (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN mitochondrion (ortholog) NW_004955468 2747870 2754621 + 102017216 AGCD01051834;AGCD01051835;GBCQ01009142;XM_005399947 XP_005400004 MODEL 8943876 protein-coding LOC102028498 zinc finger protein 717 NW_004955456 8017266 8031282 + 102028498 AGCD01046444;AGCD01046445;AGCD01046446;GBDJ01404406;XM_005396694;XM_013520522;XM_013520523;XM_013520524;XM_013520525 XP_005396751;XP_013375976;XP_013375977;XP_013375978;XP_013375979 MODEL 8864924 protein-coding Psmc1 proteasome 26S subunit, ATPase 1 ENCODES a protein that exhibits TBP-class protein binding (ortholog); INVOLVED IN regulation of AMPA receptor activity (ortholog); ASSOCIATED WITH neurodevelopmental disorder with poor growth, spastic tetraplegia, and hearing loss (ortholog); prostate cancer (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); proteasome accessory complex (ortholog) NW_004955438 12705328 12721050 + 102012685 AGCD01035267;GBDF01004856;XM_005390281 XP_005390338 MODEL 8731900 ncrna LOC102026142 uncharacterized LOC102026142 NW_004955514 5277373 5284290 + 102026142 AGCD01067150;GBDF01086629;XR_264514 MODEL 8969572 pseudo LOC102019065 dnaJ homolog subfamily B member 6-like NW_004955484 9636137 9636807 - 102019065 AGCD01058424 MODEL 8992611 protein-coding Vwa5b1 von Willebrand factor A domain containing 5B1 NW_004955452 874819 938134 + 102018677 AGCD01043828;GBDK01400521;XM_005394679;XM_013519734;XM_013519735 XP_005394736;XP_013375188;XP_013375189 MODEL 9034625 protein-coding Recql4 RecQ like helicase 4 ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); bubble DNA binding (ortholog); DNA/DNA annealing activity (ortholog); INVOLVED IN DNA replication (ortholog); negative regulation of sister chromatid cohesion (ortholog); pigmentation (ortholog); ASSOCIATED WITH B-lymphoblastic leukemia/lymphoma with ETV6-RUNX1 (ortholog); Baller-Gerold syndrome (ortholog); breast cancer (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955454 3136097 3142525 - 102012055 AGCD01045057;GBDF01177422;XM_005395909;XM_005395911;XM_005395913 XP_005395966;XP_005395968;XP_005395970 MODEL 8775480 protein-coding Tgm5 transglutaminase 5 ASSOCIATED WITH genetic disease (ortholog); peeling skin syndrome 1 (ortholog); peeling skin syndrome 2 (ortholog) NW_004955416 9808903 9842784 - 102030305 AGCD01017099;GBDI01211861;XM_005381369;XR_001233282 XP_005381426 MODEL 8915953 protein-coding Tom1 target of myb1 membrane trafficking protein ENCODES a protein that exhibits clathrin binding (ortholog); clathrin heavy chain binding (ortholog); myosin VI binding (ortholog); INVOLVED IN autophagosome-lysosome fusion (ortholog); endosomal transport (ortholog); positive regulation of autophagosome maturation (ortholog); ASSOCIATED WITH immunodeficiency 85 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955405 43091632 43115016 + 102007620 AGCD01005599;GBDF01043198;XM_005374661;XM_013519245 XP_005374718;XP_013374699 MODEL 8991410 pseudo LOC102003668 uncharacterized LOC102003668 NW_004955423 22908358 22973034 - 102003668 AGCD01023981;AGCD01023982;AGCD01023983;AGCD01023984;AGCD01023985;AGCD01023986 MODEL 8721098 protein-coding Pla2g4c phospholipase A2 group IVC ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); phosphatidylcholine lysophospholipase A1 activity (ortholog); INVOLVED IN glycerophospholipid catabolic process (ortholog); lipid droplet formation (ortholog); phosphatidylcholine acyl-chain remodeling (ortholog); FOUND IN cell cortex (ortholog); endoplasmic reticulum membrane (ortholog); lipid droplet (ortholog) NW_004955609 182706 212102 + 102010967 AGCD01077053;AGCD01077054;GBDJ01028499;XM_013510120 XP_013365574 MODEL 8880631 protein-coding Skp1 S-phase kinase associated protein 1 ENCODES a protein that exhibits beta-catenin binding (ortholog); cullin family protein binding (ortholog); F-box domain binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); maintenance of protein location in nucleus (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); PARTICIPATES IN Notch signaling pathway; nuclear factor kappa B signaling pathway; nuclear factor, erythroid 2 like 2 signaling pathway; ASSOCIATED WITH Keratoconus 1 (ortholog); FOUND IN centrosome (ortholog); Cul7-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955408 5393851 5412644 - 102012613 AGCD01008133;AGCD01008134;GBBH01003740;GBCB01004285;XM_005376136 XP_005376193 MODEL 8806136 protein-coding Snd1 staphylococcal nuclease and tudor domain containing 1 ENCODES a protein that exhibits 3' overhang single-stranded DNA endonuclease activity (ortholog); endonuclease activity (ortholog); RISC complex binding (ortholog); INVOLVED IN miRNA catabolic process (ortholog); mRNA catabolic process (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); hypospadias (ortholog); long QT syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dense body (ortholog) NW_004955479 8692674 9124504 + 102024672 AGCD01056451;AGCD01056452;AGCD01056453;AGCD01056454;AGCD01056455;AGCD01056456;AGCD01056457;GBDI01008676;XM_005402366 XP_005402423 MODEL 8917790 protein-coding Bptf bromodomain PHD finger transcription factor ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); brain development (ortholog); cellular response to nerve growth factor stimulus (ortholog); PARTICIPATES IN histone modification pathway; ISWI family mediated chromatin remodeling pathway; ASSOCIATED WITH alcohol dependence (ortholog); Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN ATPase complex (ortholog); cell body (ortholog); chromatin (ortholog) NW_004955478 6990816 7088751 + 102026861 AGCD01055938;AGCD01055939;AGCD01055940;AGCD01055941;GBBH01089810;GBCQ01152099;XM_013503185;XM_013503186;XM_013503187;XM_013503188;XM_013503189;XM_013503190;XM_013503191;XM_013503192;XM_013503193;XM_013503194;XM_013503195 XP_013358639;XP_013358640;XP_013358641;XP_013358642;XP_013358643;XP_013358644;XP_013358645;XP_013358646;XP_013358647;XP_013358648;XP_013358649 MODEL 8994864 pseudo LOC102006491 ferritin heavy chain-like NW_004955434 1171311 1191802 + 102006491 AGCD01032056;AGCD01032057 MODEL 8982690 protein-coding Rab40c RAB40C, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN cell migration (ortholog); lipid droplet formation (ortholog); negative regulation of focal adhesion assembly (ortholog); ASSOCIATED WITH epilepsy (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955442 16577843 16614132 - 102024512 AGCD01037901;AGCD01037902;AGCD01037903;GBCE01155373;GBCQ01129291;XM_005391634 XP_005391691 MODEL 9043870 protein-coding Pop7 POP7 ribonuclease P/MRP subunit ENCODES a protein that exhibits ribonuclease P activity (ortholog); ribonuclease P RNA binding (ortholog); INVOLVED IN tRNA 5'-leader removal (ortholog); PARTICIPATES IN tRNA maturation pathway; FOUND IN cytoplasm (ortholog); multimeric ribonuclease P complex (ortholog); nucleolar ribonuclease P complex (ortholog) NW_004955573 217809 218915 - 102014095 AGCD01074968;GBDJ01353728;XM_005413692;XM_005413693 XP_005413749;XP_005413750 MODEL 8853421 pseudo LOC102010635 ubiquitin carboxyl-terminal hydrolase 48-like NW_004955441 3586283 3611712 + 102010635 AGCD01036808;AGCD01036809;AGCD01036810;AGCD01036811;AGCD01036812;AGCD01036813 MODEL 39133402 snrna U2 U2 spliceosomal RNA 8858406 protein-coding Septin8 septin 8 ENCODES a protein that exhibits SNARE binding (ortholog); INVOLVED IN regulation of intracellular protein transport (ortholog); regulation of protein stability (ortholog); regulation of SNARE complex assembly (ortholog); FOUND IN cytoplasm (ortholog); myelin sheath (ortholog); presynapse (ortholog) NW_004955408 4129302 4143683 - 102003838 AGCD01008089;GBCE01094947;GBDK01003639;XM_005376114 XP_005376171 MODEL 9043097 pseudo LOC102010252 60S ribosomal protein L35a pseudogene NW_004955475 5564528 5564859 + 102010252 AGCD01054922 MODEL 8742543 protein-coding Slitrk3 SLIT and NTRK like family member 3 INVOLVED IN axonogenesis (ortholog); gephyrin clustering involved in postsynaptic density assembly (ortholog); neurotransmitter-gated ion channel clustering (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN cell surface (ortholog); GABA-ergic synapse (ortholog); postsynaptic density membrane (ortholog) NW_004955448 14846976 14852612 - 102025960 AGCD01041649;AGCD01041650;GBDJ01262456;XM_013518581 XP_013374035 MODEL 8972647 protein-coding Sctr secretin receptor ENCODES a protein that exhibits peptide binding (ortholog); peptide hormone binding (ortholog); secretin receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); diet induced thermogenesis (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH type 2 diabetes mellitus (ortholog); FOUND IN cytoplasmic microtubule (ortholog); plasma membrane (ortholog) NW_004955459 10192449 10270483 + 102020770 AGCD01048181;AGCD01048182;AGCD01048183;AGCD01048184;GBDF01222090;XM_005397666;XM_005397668;XM_005397669;XM_005397670;XM_005397671;XM_013521062;XM_013521063 XP_005397723;XP_005397725;XP_005397726;XP_005397727;XP_005397728;XP_013376516;XP_013376517 MODEL 8985971 protein-coding LOC102028845 formin-like protein 6 NW_004955467 74598 87270 - 102028845 AGCD01051208;GBDF01221170;XM_013522044;XM_013522045 XP_013377498;XP_013377499 MODEL 39131456 protein-coding RASGEF1C RasGEF domain family member 1C 8848442 pseudo LOC102019069 transcription intermediary factor 1-beta pseudogene NW_004955486 2153713 2156471 + 102019069 AGCD01058991;AGCD01058992;XM_005404301 MODEL 8704247 pseudo LOC102005408 nucleosome assembly protein 1-like 1 pseudogene NW_004955515 171191 172070 + 102005408 AGCD01067185 MODEL 8784093 ncrna LOC102030281 uncharacterized LOC102030281 NW_004955458 1376224 1381209 - 102030281 AGCD01047178;AGCD01047179;GBDJ01337436;XR_001236478;XR_001236479 MODEL 8939046 ncrna LOC102023349 uncharacterized LOC102023349 NW_004955473 201154 206965 - 102023349 AGCD01053833;GBDF01118988;XR_263576 MODEL 9029969 protein-coding Septin9 septin 9 INVOLVED IN actin cytoskeleton organization (ortholog); anterograde dendritic transport of neurotransmitter receptor complex (ortholog); cytoskeleton organization (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Adenomatous Polyps (ortholog); amyotrophic neuralgia (ortholog); FOUND IN actin cytoskeleton (ortholog); axoneme (ortholog); cilium (ortholog) NW_004955506 4943108 5033088 - 102014381 AGCD01065350;AGCD01065351;GBBH01030877;GBDF01087331;XM_005407395 XP_005407452 MODEL 8973291 ncrna LOC102017532 uncharacterized LOC102017532 NW_004955405 28134343 28156820 + 102017532 AGCD01005231;AGCD01005232;GBDF01124119;XR_259401 MODEL 8721023 protein-coding LOC102009464 chromosome unknown open reading frame, human C5orf15 NW_004955408 5245336 5256655 - 102009464 AGCD01008129;GBCQ01005179;XM_005376124;XM_005376125 XP_005376181;XP_005376182 MODEL 8929757 pseudo LOC102027165 olfactory receptor 10R2-like NW_004955468 10388916 10391324 + 102027165 AGCD01052084 MODEL 10203566 ncrna LOC106149899 uncharacterized LOC106149899 NW_004955456 16166475 16176491 + 106149899 AGCD01046692;AGCD01046693;XR_001236365 MODEL 8719129 protein-coding LOC102006846 peptidoglycan recognition protein 3 NW_004955592 116878 131316 + 102006846 AGCD01076300;GBCQ01082261;XM_005414605;XM_013509976;XM_013509977 XP_005414662;XP_013365430;XP_013365431 MODEL 8873723 protein-coding Elob elongin B ENCODES a protein that exhibits protein-containing complex binding (ortholog); transcription coactivator activity (ortholog); transcription corepressor binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); target-directed miRNA degradation (ortholog); transcription initiation at RNA polymerase II promoter (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; FOUND IN Cul2-RING ubiquitin ligase complex (ortholog); Cul5-RING ubiquitin ligase complex (ortholog); elongin complex (ortholog) NW_004955442 14498666 14501895 - 102015897 AGCD01037821;GBCQ01007574;GBDF01006908;XM_005391402 XP_005391459 MODEL 9034545 protein-coding LOC102011016 guanylate-binding protein 4 NW_004955423 4931941 4946708 + 102011016 AGCD01023550;GBBH01026001;GBCQ01139851;XM_013514413 XP_013369867 MODEL 8980497 protein-coding Parl presenilin associated rhomboid like ENCODES a protein that exhibits endopeptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN membrane protein proteolysis (ortholog); mitochondrial fusion (ortholog); negative regulation of intrinsic apoptotic signaling pathway (ortholog); PARTICIPATES IN mitochondrial autophagy pathway; ASSOCIATED WITH breast carcinoma (ortholog); Cachexia (ortholog); coronary artery disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955420 23549125 23581782 + 102029086 AGCD01021248;GBDF01120915;XM_005383356 XP_005383413 MODEL 8756232 protein-coding LOC102012655 PRAME family member 9/15-like NW_004955486 31204 93920 - 102012655 AGCD01058788;AGCD01058789;AGCD01058790;AGCD01058791;AGCD01058792;AGCD01058793;AGCD01058794;AGCD01058795;AGCD01058796;AGCD01058797;AGCD01058798;AGCD01058799;AGCD01058800;GBBH01072713;XM_013504133 XP_013359587 MODEL 8981983 ncrna LOC102021611 uncharacterized LOC102021611 NW_004955577 873676 895172 - 102021611 AGCD01075417;GBDF01145731;XR_265081 MODEL 8722174 pseudo LOC102025770 myosin-16-like NW_004955460 14968287 15011219 + 102025770 AGCD01048767 MODEL 8719457 ncrna LOC102018688 uncharacterized LOC102018688 NW_004955406 40043515 40046054 + 102018688 AGCD01006652;GBCQ01091085;XR_259528 MODEL 616940629 snorna SNORD93 small nucleolar RNA, C/D box 93 8798948 protein-coding Lgalsl galectin like ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955424 19955858 19962170 - 102028437 AGCD01024840;GBCE01013010;GBDI01217236;XM_013514741 XP_013370195 MODEL 8767572 protein-coding Vwa5b2 von Willebrand factor A domain containing 5B2 NW_004955420 23243197 23253202 - 102029752 AGCD01021238;GBCQ01177082;GBCQ01177083;XM_013513358;XM_013513359 XP_013368812;XP_013368813 MODEL 10246381 protein-coding LOC106148151 uncharacterized LOC106148151 NW_004955416 27821973 27823220 + 106148151 AGCD01017620;GBCE01046142;XM_013512548 XP_013368002 MODEL 8877078 pseudo LOC102008351 39S ribosomal protein L47, mitochondrial pseudogene NW_004955438 21220270 21221541 - 102008351 AGCD01035530 MODEL 8792298 ncrna LOC102003669 uncharacterized LOC102003669 NW_004955497 6927114 6931241 + 102003669 AGCD01062651;GBDF01281346;XR_264207;XR_264208 MODEL 10385484 ncrna LOC106147058 uncharacterized LOC106147058 NW_004955514 2646798 2653474 - 106147058 AGCD01067085;GBDI01324427;XR_001231766;XR_001231767 MODEL 8910470 protein-coding Skp2 S-phase kinase associated protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN cellular response to cell-matrix adhesion (ortholog); defense response to virus (ortholog); G1/S transition of mitotic cell cycle (ortholog); PARTICIPATES IN Notch signaling pathway; p53 signaling pathway; ASSOCIATED WITH Brain Injuries (ortholog); breast cancer (ortholog); cervix uteri carcinoma in situ (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955426 20972663 20999769 + 102011338 AGCD01026576;GBDF01112275;XM_005386206;XM_005386207 XP_005386263;XP_005386264 MODEL 8843280 protein-coding Rsrp1 arginine and serine rich protein 1 INVOLVED IN spliceosomal complex assembly (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular dysplasia 14 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN nucleus (ortholog) NW_004955452 4865330 4871049 - 102016127 AGCD01043997;AGCD01043998;GBBH01030866;GBCQ01035581;XM_013519667 XP_013375121 MODEL 9053137 protein-coding Ppp2r5b protein phosphatase 2 regulatory subunit B'beta INVOLVED IN cellular response to growth factor stimulus (ortholog); negative regulation of G0 to G1 transition (ortholog); positive regulation of neuron projection development (ortholog); FOUND IN protein phosphatase type 2A complex (ortholog) NW_004955422 20252306 20260776 - 102022091 AGCD01023072;GBCB01023268;XM_005384532;XM_005384533;XM_013513967;XM_013513968 XP_005384589;XP_005384590;XP_013369421;XP_013369422 MODEL 8899578 protein-coding LOC102027833 uncharacterized LOC102027833 NW_004955468 5055398 5059496 - 102027833 AGCD01051941;GBBH01101657;XM_005400079 XP_005400136 MODEL 9006731 ncrna LOC102028499 uncharacterized LOC102028499 NW_004955408 14684653 14777123 + 102028499 AGCD01008406;AGCD01008407;GBCQ01178233;XR_259688 MODEL 8817993 ncrna LOC102011396 uncharacterized LOC102011396 NW_004955405 4622780 4660674 - 102011396 AGCD01004650;GBDF01088044;XR_001235203;XR_001235204 MODEL 8993034 protein-coding Popdc1 popeye domain cAMP effector 1 ENCODES a protein that exhibits cAMP binding (ortholog); structural molecule activity (ortholog); INVOLVED IN cell migration involved in heart development (ortholog); epithelial cell-cell adhesion (ortholog); heart development (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2X (ortholog); genetic disease (ortholog); limb-girdle muscular dystrophy (ortholog); FOUND IN bicellular tight junction (ortholog); caveola (ortholog); cell junction (ortholog) NW_004955411 30517917 30548424 - 102030054 AGCD01012257;AGCD01012258;GBCB01000928;GBDF01087341;XM_013510787 XP_013366241 MODEL 8766313 ncrna LOC102010640 uncharacterized LOC102010640 NW_004955556 1708260 1721389 - 102010640 AGCD01073200;GBBH01223895;XR_264978 MODEL 9027960 protein-coding Ptpru protein tyrosine phosphatase receptor type U ENCODES a protein that exhibits beta-catenin binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); homotypic cell-cell adhesion (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH Dwarfism (ortholog); Experimental Diabetes Mellitus (ortholog); hypertension (ortholog); FOUND IN cell-cell junction (ortholog) NW_004955452 8223773 8296769 + 102026069 AGCD01044212;AGCD01044213;AGCD01044214;GBDJ01076331;XM_005394989;XM_005394992;XM_005394993;XM_013519598;XM_013519599;XM_013519600 XP_005395046;XP_005395049;XP_005395050;XP_013375052;XP_013375053;XP_013375054 MODEL 8770540 protein-coding Prok1 prokineticin 1 INVOLVED IN positive regulation of cell population proliferation (ortholog); positive regulation of MAPK cascade (ortholog); regulation of angiogenesis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN extracellular region (ortholog) NW_004955435 13930897 13935335 + 102018967 AGCD01033212;XM_005388924 XP_005388981 MODEL 39133404 snrna U2 U2 spliceosomal RNA 8897309 protein-coding Pdcd6 programmed cell death 6 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN apoptotic process (ortholog); cellular response to heat (ortholog); COPII vesicle coating (ortholog); FOUND IN COPII vesicle coat (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955504 75378 94654 + 102018202 AGCD01064814;GBDF01118861;XM_005406987;XM_005406988;XM_005406990;XM_005406991 XP_005407044;XP_005407045;XP_005407047;XP_005407048 MODEL 8903703 protein-coding Slc39a9 solute carrier family 39 member 9 ENCODES a protein that exhibits androgen binding (ortholog); G protein-coupled receptor activity (ortholog); zinc efflux transmembrane transporter activity (ortholog); INVOLVED IN bicellular tight junction assembly (ortholog); intracellular zinc ion homeostasis (ortholog); regulation of cellular response to testosterone stimulus (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955466 901813 960153 - 102028515 AGCD01050682;AGCD01050683;AGCD01050684;AGCD01050685;GBCQ01067034;XM_005399036;XM_013521986;XM_013521987 XP_005399093;XP_013377440;XP_013377441 MODEL 8866043 ncrna LOC102024349 uncharacterized LOC102024349 NW_004955493 2933481 2936489 + 102024349 AGCD01060974;GBDF01276985;XR_264077 MODEL 8748525 ncrna LOC102026150 uncharacterized LOC102026150 NW_004955528 1471337 1477346 - 102026150 AGCD01069564;GBCB01001641;XR_001231979;XR_264689 MODEL 9029793 pseudo LOC102006849 RNA-binding protein FUS-like NW_004955402 44011709 44055168 + 102006849 AGCD01001085;AGCD01001086 MODEL 9042599 ncrna LOC102015620 uncharacterized LOC102015620 NW_004955468 9394422 9397630 - 102015620 AGCD01052047;GBCB01074100;XR_001236870;XR_001236871;XR_263409;XR_263411 MODEL 8897185 ncrna LOC102010253 uncharacterized LOC102010253 NW_004955415 31218654 31219403 - 102010253 AGCD01016671;GBDF01001956;XR_260330 MODEL 8774048 protein-coding Tgm6 transglutaminase 6 ENCODES a protein that exhibits protein-glutamine gamma-glutamyltransferase activity (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); autosomal dominant cerebellar ataxia (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog) NW_004955415 13470268 13499500 + 102014664 AGCD01016250;AGCD01016251;GBDF01128911;XM_005380751 XP_005380808 MODEL 8706847 pseudo LOC102019085 40S ribosomal protein S11-like NW_004955503 5228501 5228977 - 102019085 AGCD01064700 MODEL 8785913 protein-coding Slitrk4 SLIT and NTRK like family member 4 INVOLVED IN axonogenesis (ortholog); behavioral fear response (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955539 1929681 1942525 - 102020162 AGCD01071215;GBDJ01343869;XM_005410903;XM_005410904 XP_005410960;XP_005410961 MODEL 8736702 pseudo LOC102006494 geranylgeranyl transferase type-2 subunit beta pseudogene NW_004955436 18078850 18082980 - 102006494 AGCD01033955 MODEL 9011313 protein-coding Tom1l1 target of myb1 like 1 membrane trafficking protein ENCODES a protein that exhibits clathrin binding (ortholog); protein kinase activator activity (ortholog); protein kinase binding (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); negative regulation of mitotic nuclear division (ortholog); positive regulation of protein autophosphorylation (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endosome (ortholog) NW_004955451 7642679 7690957 - 102019129 AGCD01043243;AGCD01043244;GBDI01175373;GBDI01175374;XM_013519382 XP_013374836 MODEL 8758381 protein-coding Pla2g4d phospholipase A2 group IVD ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); INVOLVED IN glycerophospholipid catabolic process (ortholog); FOUND IN cytoplasm (ortholog) NW_004955416 8841645 8860381 - 102017565 AGCD01017071;GBDI01198984;XM_005381323 XP_005381380 MODEL 9052062 protein-coding Rasgrf1 Ras protein specific guanine nucleotide releasing factor 1 ENCODES a protein that exhibits glutamate receptor binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); receptor tyrosine kinase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); cell population proliferation (ortholog); cellular response to antibiotic (ortholog); ASSOCIATED WITH Drug-Induced Dyskinesia (ortholog); Dyskinesias (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN apical dendrite (ortholog); apicolateral plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955533 69736 167626 - 102012360 AGCD01070312;GBDK01432528;XM_005410378;XM_013507688;XM_013507689;XM_013507690 XP_005410435;XP_013363142;XP_013363143;XP_013363144 MODEL 616940622 protein-coding TRGC1 T cell receptor gamma constant 1 8800749 protein-coding Braf B-Raf proto-oncogene, serine/threonine kinase ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); MAP kinase kinase activity (ortholog); INVOLVED IN alpha-beta T cell differentiation (ortholog); CD4-positive or CD8-positive, alpha-beta T cell lineage commitment (ortholog); CD4-positive, alpha-beta T cell differentiation (ortholog); PARTICIPATES IN adenosine signaling pathway; altered extracellular signal-regulated Raf/Mek/Erk signaling pathway; colorectal cancer pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); ameloblastoma (ortholog); Aortic Aneurysm, Giant Congenital (ortholog); FOUND IN cell body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955494 2567238 2712708 + 102018105 AGCD01061441;AGCD01061442;AGCD01061443;AGCD01061444;AGCD01061445;AGCD01061446;AGCD01061447;AGCD01061448;GBDF01011297;GBDF01011303;XM_005405413;XM_005405415;XM_005405418;XM_005405419;XM_013504993;XM_013504994;XM_013504995;XM_013504996;XM_013504997;XR_001231320;XR_001231321 XP_005405470;XP_005405472;XP_005405475;XP_005405476;XP_013360447;XP_013360448;XP_013360449;XP_013360450;XP_013360451 MODEL 8699859 ncrna LOC102017533 uncharacterized LOC102017533 NW_004955452 15825925 15829234 - 102017533 AGCD01044500;GBDF01153842;XR_001236006;XR_001236007 MODEL 8741495 protein-coding Rhoj ras homolog family member J ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); positive regulation of cell migration involved in sprouting angiogenesis (ortholog); regulation of cell shape (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); Colonic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955466 6476822 6564890 - 102010140 AGCD01050928;GBBH01186921;XM_005399158 XP_005399215 MODEL 8857651 protein-coding Recql5 RecQ like helicase 5 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); DNA helicase activity (ortholog); helicase activity (ortholog); INVOLVED IN cellular response to camptothecin (ortholog); cellular response to xenobiotic stimulus (ortholog); chromosome separation (ortholog); ASSOCIATED WITH myoepithelioma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955506 6574802 6612763 + 102015425 AGCD01065432;GBDI01137109;XM_005407490;XM_005407491 XP_005407547;XP_005407548 MODEL 8838893 protein-coding Parm1 prostate androgen-regulated mucin-like protein 1 FOUND IN early endosome (ortholog); Golgi apparatus (ortholog); late endosome (ortholog) NW_004955474 1065758 1144460 + 102007887 AGCD01054239;GBDJ01141983;XM_005401315 XP_005401372 MODEL 8822316 protein-coding LOC102028847 olfactory receptor 6N2 NW_004955468 10647981 10648934 - 102028847 AGCD01052093;XM_005400318 XP_005400375 MODEL 8925355 pseudo LOC102005409 CTD small phosphatase-like protein 2 pseudogene NW_004955520 665791 667200 - 102005409 AGCD01068028 MODEL 8730595 ncrna LOC102030287 uncharacterized LOC102030287 NW_004955410 3017406 3049089 - 102030287 AGCD01010639;AGCD01010640;AGCD01010641;AGCD01010642;GBDF01224482;XR_259819 MODEL 8985804 protein-coding LOC102023351 skin secretory protein xP2-like NW_004955415 79838 125434 + 102023351 AGCD01015830;AGCD01015831;AGCD01015832;GBDF01276867;XM_013512119 XP_013367573 MODEL 8928760 protein-coding Rab42 RAB42, member RAS oncogene family ASSOCIATED WITH autistic disorder (ortholog) NW_004955452 7673187 7676293 + 102019977 AGCD01044180;AGCD01044181;GBCE01167668;GBDJ01214087;XM_013519491 XP_013374945 MODEL 9067303 ncrna LOC102003670 uncharacterized LOC102003670 NW_004955424 25890232 25893041 - 102003670 AGCD01025056;GBDF01023092;XR_261109 MODEL 8864890 protein-coding Sned1 sushi, nidogen and EGF like domains 1 INVOLVED IN cell adhesion mediated by integrin (ortholog); FOUND IN extracellular matrix (ortholog) NW_004955542 587159 628159 - 102012475 AGCD01071474;GBCE01117402;XM_005411144;XM_013508057;XM_013508058;XM_013508059 XP_005411201;XP_013363511;XP_013363512;XP_013363513 MODEL 8955221 pseudo LOC102009469 non-POU domain-containing octamer-binding protein pseudogene NW_004955458 11867254 11868199 - 102009469 AGCD01047762 MODEL 8791941 protein-coding Serac1 serine active site containing 1 INVOLVED IN extracellular matrix organization (ortholog); intracellular cholesterol transport (ortholog); phosphatidylglycerol acyl-chain remodeling (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome (ortholog); Deafness (ortholog); dystonia (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); extracellular matrix (ortholog) NW_004955439 4234440 4291947 + 102013761 AGCD01035706;AGCD01035707;AGCD01035708;GBBH01082146;XM_005390526 XP_005390583 MODEL 8732623 protein-coding LOC102027167 uncharacterized LOC102027167 NW_004955470 4378118 4379167 - 102027167 AGCD01052730;XM_005400697 XP_005400754 MODEL 9011843 protein-coding Psmc2 proteasome 26S subunit, ATPase 2 ENCODES a protein that exhibits general transcription initiation factor binding (ortholog); proteasome-activating activity (ortholog); TBP-class protein binding (ortholog); INVOLVED IN regulation of AMPA receptor activity (ortholog); ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); cytosol (ortholog) NW_004955410 8341218 8355515 + 102016988 AGCD01010744;GBDF01009573;XM_005377230 XP_005377287 MODEL 10194803 ncrna LOC106149900 uncharacterized LOC106149900 NW_004955456 569714 581804 - 106149900 AGCD01046208;GBDJ01119069;XR_001236366;XR_001236367 MODEL 8827727 protein-coding LOC102027834 olfactory receptor 6K3-like NW_004955468 10569676 10570623 - 102027834 AGCD01052087;XM_005400316 XP_005400373 MODEL 8817072 protein-coding Rsu1 Ras suppressor protein 1 INVOLVED IN cell-matrix adhesion (ortholog); positive regulation of neural precursor cell proliferation (ortholog); Ras protein signal transduction (ortholog); ASSOCIATED WITH Chloracne (ortholog); osteoporosis (ortholog); FOUND IN focal adhesion (ortholog) NW_004955429 11043205 11234698 + 102029209 AGCD01028685;GBBH01187919;XM_005386967;XM_005386968;XR_261324 XP_005387024;XP_005387025 MODEL 8717866 ncrna LOC102012658 uncharacterized LOC102012658 NW_004955421 25068843 25105800 + 102012658 AGCD01022227;AGCD01022228;GBCQ01032486;XR_260828 MODEL 9008992 protein-coding Ptprz1 protein tyrosine phosphatase receptor type Z1 ENCODES a protein that exhibits fibroblast growth factor binding (ortholog); integrin binding (ortholog); phosphatase activity (ortholog); INVOLVED IN axonal fasciculation (ortholog); axonogenesis (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Brain Hypoxia-Ischemia (ortholog); Brain Injuries (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); dendritic spine (ortholog) NW_004955479 3611658 3734225 + 102021008 AGCD01056301;GBDI01323065;XM_013503257 XP_013358711 MODEL 8714882 protein-coding Pdcd6ip programmed cell death 6 interacting protein ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); identical protein binding (ortholog); protein dimerization activity (ortholog); INVOLVED IN actomyosin contractile ring assembly (ortholog); bicellular tight junction assembly (ortholog); extracellular exosome biogenesis (ortholog); ASSOCIATED WITH osteoarthritis (ortholog); primary autosomal recessive microcephaly 29 (ortholog); FOUND IN actomyosin (ortholog); centrosome (ortholog); cytosol (ortholog) NW_004955421 1034843 1109637 + 102022707 AGCD01021587;AGCD01021588;GBDI01120341;XM_005383657;XM_005383658 XP_005383714;XP_005383715 MODEL 8706439 protein-coding LOC102006850 vomeronasal type-1 receptor 2-like NW_004955603 165496 166395 - 102006850 AGCD01076814;XM_005414836 XP_005414893 MODEL 8712714 protein-coding Scube1 signal peptide, CUB domain and EGF like domain containing 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of smoothened signaling pathway (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular region (ortholog) NW_004955413 28339212 28461626 - 102013711 AGCD01014556;AGCD01014557;GBDF01285768;XM_005379668 XP_005379725 MODEL 8857160 ncrna LOC102021615 uncharacterized LOC102021615 NW_004955403 17548756 17613098 - 102021615 AGCD01002079;AGCD01002080;GBDF01001507;XR_259181 MODEL 39132060 snorna SNORD94 small nucleolar RNA, C/D box 94 8809432 pseudo LOC102018689 thymocyte nuclear protein 1 pseudogene NW_004955454 4953581 4954554 - 102018689 AGCD01045129 MODEL 9062900 pseudo LOC102008354 pre-mRNA-processing factor 17-like NW_004955441 193642 199372 - 102008354 AGCD01036688 MODEL 10209585 ncrna LOC106147059 uncharacterized LOC106147059 NW_004955514 2691466 2693010 - 106147059 AGCD01067085;GBBH01175162;XR_001231768 MODEL 8909276 pseudo LOC102028500 protein SGT1 homolog pseudogene NW_004955457 8544807 8547397 + 102028500 AGCD01046912 MODEL 8889452 pseudo LOC102030288 60S ribosomal protein L37 pseudogene NW_004955462 10769547 10769870 - 102030288 AGCD01049372;XM_005398242 MODEL 8772274 pseudo LOC102011398 ubiquitin-conjugating enzyme E2 D2 pseudogene NW_004955406 14133361 14133789 - 102011398 AGCD01005958 MODEL 9053708 protein-coding Ppp2r5c protein phosphatase 2 regulatory subunit B'gamma ENCODES a protein that exhibits peptidase activity (ortholog); protein phosphatase regulator activity (ortholog); INVOLVED IN DNA damage response, signal transduction by p53 class mediator (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 41 (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); Chromosomal Instability (ortholog); FOUND IN chromosome, centromeric region (ortholog); membrane (ortholog); nucleoplasm (ortholog) NW_004955538 1233511 1363956 + 102022745 AGCD01071054;AGCD01071055;AGCD01071056;GBCE01075191;GBDF01002398;XM_013507826 XP_013363280 MODEL 8782075 pseudo LOC102011017 60S ribosomal protein L7 pseudogene NW_004955423 15037609 15043726 + 102011017 AGCD01023788;AGCD01023789 MODEL 8914346 protein-coding Popdc2 popeye domain cAMP effector 2 ENCODES a protein that exhibits cAMP binding (ortholog); INVOLVED IN regulation of heart rate (ortholog); regulation of membrane potential (ortholog); sinoatrial node cell development (ortholog); ASSOCIATED WITH Cardiac Conduction Disease with or without Dilated Cardiomyopathy 2 (ortholog); FOUND IN membrane (ortholog); sarcolemma (ortholog) NW_004955427 19347880 19367759 - 102020590 AGCD01027365;GBCB01073022;XM_005386452;XM_005386453;XM_013515175 XP_005386509;XP_005386510;XP_013370629 MODEL 8981400 protein-coding Brap BRCA1 associated protein ENCODES a protein that exhibits identical protein binding (ortholog); nuclear localization sequence binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN MAPK cascade (ortholog); negative regulation of signal transduction (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH myocardial infarction (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); ubiquitin ligase complex (ortholog) NW_004955482 8254709 8282416 - 102029515 AGCD01057515;GBDF01246857;XM_005403172 XP_005403229 MODEL 9063431 pseudo LOC102026154 FYN-binding protein pseudogene NW_004955534 2796216 2798595 + 102026154 AGCD01070550 MODEL 8957352 ncrna LOC102015621 uncharacterized LOC102015621 NW_004955413 32654378 32678418 + 102015621 AGCD01014642;GBDF01124715;XR_001232938;XR_001232939 MODEL 9039305 pseudo LOC102024355 solute carrier family 2, facilitated glucose transporter member 3 pseudogene NW_004955423 8600576 8602607 + 102024355 AGCD01023634;XM_005385137 MODEL 9064096 protein-coding LOC102025775 histone H2AX ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); damaged DNA binding (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to gamma radiation (ortholog); cellular senescence (ortholog); cerebral cortex development (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Chromosome Breakage (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); chromosome (ortholog) NW_004955412 20203173 20204714 - 102025775 AGCD01012996;GBDF01226518;XM_005378302 XP_005378359 MODEL 9004400 protein-coding Slc3a1 solute carrier family 3 member 1 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN amino acid transport (ortholog); aspartate transmembrane transport (ortholog); gene expression (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); cystinuria (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); plasma membrane (ortholog) NW_004955441 11381390 11418193 + 102003589 AGCD01037107;GBCQ01008312;XM_005390946 XP_005391003 MODEL 8888759 protein-coding LOC102010255 deleted in malignant brain tumors 1 protein NW_004955477 966067 1052359 + 102010255 AGCD01055497;AGCD01055498;AGCD01055499;AGCD01055500;AGCD01055501;AGCD01055502;GBDF01198016;XM_013503021 XP_013358475 MODEL 8776090 protein-coding Lgi1 leucine rich glioma inactivated 1 ENCODES a protein that exhibits receptor ligand activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN axon guidance (ortholog); neuron projection development (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); Developmental and Epileptic Encephalopathy 121 (ortholog); epilepsy (ortholog); FOUND IN axon initial segment (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955507 268032 304949 + 102003163 AGCD01065465;AGCD01065466;GBBH01057240;XM_005407523;XM_005407524;XM_013506244 XP_005407580;XP_005407581;XP_013361698 MODEL 10228599 protein-coding Pdcd7 programmed cell death 7 INVOLVED IN positive regulation of apoptotic signaling pathway (ortholog); positive regulation of T cell apoptotic process (ortholog); response to glucocorticoid (ortholog); FOUND IN spliceosomal complex (ortholog); U11/U12 snRNP (ortholog); U12-type precatalytic spliceosome (ortholog) NW_004955450 10294184 10307234 + 106146308 AGCD01042609;AGCD01042610;GBCE01152997;GBDF01253203;XM_013518970 XP_013374424 MODEL 9031881 pseudo LOC102019090 60S ribosomal protein L5 pseudogene NW_004955428 18851546 18852411 - 102019090 AGCD01028072 MODEL 8823344 protein-coding Sla Src like adaptor PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); vitiligo (ortholog) NW_004955461 7622501 7643008 - 102014427 AGCD01048921;GBDI01326913;XM_005398022 XP_005398079 MODEL 8820121 protein-coding Tgm7 transglutaminase 7 NW_004955416 9847645 9870627 - 102003124 AGCD01017099;GBCQ01191296;XM_005381371 XP_005381428 MODEL 8726904 protein-coding Eloc elongin C ENCODES a protein that exhibits protein-containing complex binding (ortholog); transcription corepressor binding (ortholog); INVOLVED IN positive regulation of transcription elongation by RNA polymerase II (ortholog); protein ubiquitination (ortholog); target-directed miRNA degradation (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH renal cell carcinoma (ortholog); FOUND IN Cul2-RING ubiquitin ligase complex (ortholog); Cul5-RING ubiquitin ligase complex (ortholog); elongin complex (ortholog) NW_004955444 6400721 6415881 + 102020296 AGCD01038864;AGCD01038865;GBDF01004742;XM_005392079;XM_005392080 XP_005392136;XP_005392137 MODEL 8984025 protein-coding Pla2g4e phospholipase A2 group IVE ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); obsolete N-acyltransferase activity (ortholog); INVOLVED IN N-acylphosphatidylethanolamine metabolic process (ortholog); positive regulation of endocytic recycling (ortholog); FOUND IN cytoplasm (ortholog); early endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955416 8765620 8826184 - 102017011 AGCD01017068;AGCD01017069;AGCD01017070;GBCB01100712;XM_005381321;XM_013512526;XM_013512528 XP_005381378;XP_013367980;XP_013367982 MODEL 8712673 protein-coding LOC102010643 leukocyte immunoglobulin-like receptor subfamily A member 3 NW_004955567 1316802 1426452 - 102010643 AGCD01074467;AGCD01074468;AGCD01074469;AGCD01074470;AGCD01074471;AGCD01074472;AGCD01074473;AGCD01074474;AGCD01074475;AGCD01074476;XM_013509260 XP_013364714 MODEL 8827848 protein-coding LOC102003671 zinc finger protein 431-like NW_004955499 450865 478358 - 102003671 AGCD01063232;GBDI01258841;XM_005406501;XM_013505568;XM_013505569 XP_005406558;XP_013361022;XP_013361023 MODEL 8961220 protein-coding Rab43 RAB43, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GTPase activity (ortholog); INVOLVED IN cellular response to type II interferon (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); Golgi organization (ortholog); FOUND IN cis-Golgi network membrane (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog) NW_004955429 13474460 13506979 - 102010504 AGCD01028750;AGCD01028751;AGCD01028752;GBBH01114788;GBCE01117554;XM_005386994 XP_005387051 MODEL 8974501 protein-coding Snf8 SNF8 subunit of ESCRT-II ENCODES a protein that exhibits channel regulator activity (ortholog); lipid binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN early endosome to late endosome transport (ortholog); endocytic recycling (ortholog); macroautophagy (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH Developmental and Epileptic Encephalopathy 115 (ortholog); Hirschsprung's disease (ortholog); NEURODEVELOPMENTAL DISORDER PLUS OPTIC ATROPHY (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endosome membrane (ortholog) NW_004955451 12396625 12406014 + 102029141 AGCD01043392;GBDI01006108;XM_005394225 XP_005394282 MODEL 8804822 protein-coding U2af1 U2 small nuclear RNA auxiliary factor 1 ENCODES a protein that exhibits RS domain binding (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); myelodysplastic syndrome (ortholog); osteoporosis (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955407 38895741 38909820 + 102005108 AGCD01007813;AGCD01007814;GBBH01031743;XM_005375793;XM_005375794;XM_013505025 XP_005375850;XP_005375851;XP_013360479 MODEL 9011212 protein-coding Serbp1 SERPINE1 mRNA binding protein 1 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); ribosome binding (ortholog); RNA binding (ortholog); INVOLVED IN negative regulation of translation (ortholog); PML body organization (ortholog); regulation of apoptotic process (ortholog); ASSOCIATED WITH Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955423 23763356 23774816 + 102015645 AGCD01024017;GBBH01001652;GBCE01000542;XM_005385275;XM_013514510;XM_013514511;XM_013514512 XP_005385332;XP_013369964;XP_013369965;XP_013369966 MODEL 10359249 ncrna LOC106148152 uncharacterized LOC106148152 NW_004955416 10165421 10169954 - 106148152 AGCD01017110;GBDF01234427;XR_001233333 MODEL 8946181 protein-coding LOC102027168 olfactory receptor 51V1-like NW_004955414 21065698 21066642 - 102027168 AGCD01015405;XM_005380073 XP_005380130 MODEL 9014452 protein-coding Psmc3 proteasome 26S subunit, ATPase 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN blastocyst development (ortholog); host-mediated perturbation of viral transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH cataract (ortholog); DEAFNESS, CATARACT, IMPAIRED INTELLECTUAL DEVELOPMENT, AND POLYNEUROPATHY (ortholog); Developmental Disabilities (ortholog); FOUND IN nucleus (ortholog); P-body (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955422 837934 843161 + 102021984 AGCD01022437;GBDF01010552;XM_005383972 XP_005384029 MODEL 8803226 protein-coding Rtbdn retbindin ENCODES a protein that exhibits riboflavin binding (ortholog); ASSOCIATED WITH Ependymomas (ortholog); FOUND IN external side of plasma membrane (ortholog); interphotoreceptor matrix (ortholog) NW_004955415 31895446 31899927 - 102023350 AGCD01016700;GBDF01121247;XM_005381033 XP_005381090 MODEL 616940648 snorna SNORD95 small nucleolar RNA, C/D box 95 8969866 pseudo LOC102028851 cyclin-dependent kinase 1 pseudogene NW_004955414 7272154 7278058 - 102028851 AGCD01014953 MODEL 9060860 protein-coding Parn poly(A)-specific ribonuclease ENCODES a protein that exhibits cation binding (ortholog); poly(A)-specific ribonuclease activity (ortholog); protein kinase binding (ortholog); INVOLVED IN box H/ACA sno(s)RNA 3'-end processing (ortholog); lncRNA processing (ortholog); miRNA catabolic process (ortholog); ASSOCIATED WITH autosomal recessive dyskeratosis congenita 6 (ortholog); dyskeratosis congenita (ortholog); genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); nuclear speck (ortholog); nucleolus (ortholog) NW_004955442 4255726 4421083 + 102016640 AGCD01037525;AGCD01037526;AGCD01037527;GBDF01159761;XM_005391134;XM_005391135;XM_005391140;XM_013517837 XP_005391191;XP_005391192;XP_005391197;XP_013373291 MODEL 8712595 pseudo LOC102008356 kinetochore-associated protein DSN1 homolog pseudogene NW_004955444 350531 351610 - 102008356 AGCD01038664;XM_005392056 MODEL 8918707 protein-coding Popdc3 popeye domain cAMP effector 3 ENCODES a protein that exhibits cAMP binding (ortholog); INVOLVED IN regulation of membrane potential (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 26 (ortholog); FOUND IN membrane (ortholog) NW_004955411 30566988 30573158 - 102030617 AGCD01012259;GBDF01133919;XM_005377823;XM_013510788 XP_005377880;XP_013366242 MODEL 9058216 pseudo LOC102023352 N-alpha-acetyltransferase 50 pseudogene NW_004955416 682183 682584 - 102023352 AGCD01016819 MODEL 8886977 protein-coding Slitrk5 SLIT and NTRK like family member 5 INVOLVED IN adult behavior (ortholog); axonogenesis (ortholog); chemical synaptic transmission (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); obsessive-compulsive disorder (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog); signaling receptor complex (ortholog) NW_004955404 21342379 21350803 - 102004347 AGCD01003724;GBDK01424009;XM_005374119;XM_005374120 XP_005374176;XP_005374177 MODEL 9020960 protein-coding LOC102021619 alcohol dehydrogenase class-3 NW_004955405 9311270 9327919 - 102021619 AGCD01004768;AGCD01004769;GBCQ01008804;XM_005374293 XP_005374350 MODEL 8854456 protein-coding Trh thyrotropin releasing hormone ENCODES a protein that exhibits thyrotropin-releasing hormone activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adult walking behavior (ortholog); eating behavior (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); amnestic disorder (ortholog); Bradycardia (ortholog); FOUND IN extracellular region (ortholog); secretory granule (ortholog) NW_004955429 17487275 17489385 - 102010610 AGCD01028858;GBBH01103008;XM_005387079;XM_013515365 XP_005387136;XP_013370819 MODEL 9034501 ncrna LOC102009472 uncharacterized LOC102009472 NW_004955462 1145564 1150883 - 102009472 AGCD01049102;AGCD01049103;GBDF01041427;XR_263087 MODEL 8705616 protein-coding Redic1 regulator of DNA class I crossover intermediates 1 ASSOCIATED WITH spermatogenic failure (ortholog) NW_004955505 676988 763746 - 102029312 AGCD01064961;GBDF01155084;XM_005407103;XM_005407106;XM_013505952;XM_013505953;XM_013505954;XM_013505955;XM_013505956 XP_005407160;XP_005407163;XP_013361406;XP_013361407;XP_013361408;XP_013361409;XP_013361410 MODEL 8958177 protein-coding LOC102017540 carbonyl reductase [NADPH] 1-like NW_004955407 35259036 35262870 + 102017540 AGCD01007734;AGCD01007735;GBCQ01007849;XM_005375980 XP_005376037 MODEL 8764834 protein-coding Rasgrf2 Ras protein specific guanine nucleotide releasing factor 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN long-term synaptic potentiation (ortholog); postsynaptic modulation of chemical synaptic transmission (ortholog); regulation of NMDA receptor activity (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN endoplasmic reticulum (ortholog); glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955418 28930666 29126495 - 102005807 AGCD01019448;AGCD01019449;AGCD01019450;AGCD01019451;AGCD01019452;AGCD01019453;GBDK01432521;XM_013512878 XP_013368332 MODEL 8881740 protein-coding Prok2 prokineticin 2 ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); INVOLVED IN angiogenesis (ortholog); chemotaxis (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH amenorrhea (ortholog); disorder of sexual development (ortholog); genetic disease (ortholog) NW_004955421 16325519 16339458 + 102030322 AGCD01021998;GBDK01269636;XM_005383770;XM_005383771 XP_005383827;XP_005383828 MODEL 9051765 protein-coding Vwa7 von Willebrand factor A domain containing 7 NW_004955437 299554 308609 - 102004752 AGCD01034117;AGCD01034118;GBBH01227762;GBDJ01390262;XM_013516802 XP_013372256 MODEL 8720731 pseudo LOC102027835 protein S100-A10 pseudogene NW_004955414 9467734 9468058 - 102027835 AGCD01015026;XM_005379803 MODEL 8943699 protein-coding Rhoq ras homolog family member Q ENCODES a protein that exhibits GBD domain binding (ortholog); GTPase activity (ortholog); profilin binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); cortical actin cytoskeleton organization (ortholog); GTP metabolic process (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin signaling pathway; Rho/Rac/Cdc42 mediated signaling pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN actin filament (ortholog); membrane raft (ortholog); plasma membrane (ortholog) NW_004955441 13457757 13495221 + 102013343 AGCD01037151;GBBH01164132;GBDK01318868;XM_005390979;XM_013517588 XP_005391036;XP_013373042 MODEL 8760565 ncrna LOC102012659 uncharacterized LOC102012659 NW_004955422 126981 128331 + 102012659 AGCD01022394;GBDF01161749;XR_260841 MODEL 8811114 pseudo LOC102006499 60S ribosomal protein L21 pseudogene NW_004955547 321133 321616 - 102006499 AGCD01072145;XR_264897 MODEL 8762303 pseudo LOC102018690 voltage-dependent anion-selective channel protein 1 pseudogene NW_004955407 3264485 3268366 + 102018690 AGCD01006856;XR_259547 MODEL 8826889 ncrna LOC102024364 uncharacterized LOC102024364 NW_004955428 4671289 4689561 - 102024364 AGCD01027700;GBBH01044020;XR_261294 MODEL 8981652 protein-coding Brat1 BRCA1 associated ATM activator 1 ENCODES a protein that exhibits ribonuclease inhibitor activity (ortholog); INVOLVED IN apoptotic process (ortholog); cell migration (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH D-bifunctional protein deficiency (ortholog); Dravet syndrome (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955460 12662005 12674223 - 102012169 AGCD01048661;GBDI01062771;XM_005397864;XM_013521148;XM_013521149;XM_013521150;XM_013521151;XM_013521152 XP_005397921;XP_013376602;XP_013376603;XP_013376604;XP_013376605;XP_013376606 MODEL 9006711 pseudo LOC102027169 mitogen-activated protein kinase 6 pseudogene NW_004955470 5185407 5190353 + 102027169 AGCD01052747 MODEL 8773330 protein-coding Scube2 signal peptide, CUB domain and EGF like domain containing 2 ENCODES a protein that exhibits hedgehog family protein binding (ortholog); protein carrier activity (ortholog); INVOLVED IN chondrocyte differentiation involved in endochondral bone morphogenesis (ortholog); positive regulation of chondrocyte proliferation (ortholog); positive regulation of ossification (ortholog); FOUND IN extracellular region (ortholog) NW_004955414 24751134 24818338 - 102025996 AGCD01015553;AGCD01015554;AGCD01015555;AGCD01015556;GBBH01011763;GBDK01358943;XM_013511992 XP_013367446 MODEL 8736192 protein-coding LOC102030289 lymphotactin-like NW_004955462 8803286 8805479 + 102030289 AGCD01049328;XM_013521369 XP_013376823 MODEL 9007700 protein-coding Tgoln2 trans-golgi network protein 2 ASSOCIATED WITH Myocardial Ischemia (ortholog); thyroid gland disease (ortholog); FOUND IN endosome (ortholog); glutamatergic synapse (ortholog); Golgi apparatus (ortholog) NW_004955424 2122410 2131734 - 102006477 AGCD01024263;GBCQ01005356;XM_013514587 XP_013370041 MODEL 10247351 ncrna LOC106149901 uncharacterized LOC106149901 NW_004955456 15079998 15082331 + 106149901 AGCD01046662;GBDK01263026;XR_001236368 MODEL 8951047 protein-coding Sla2 Src like adaptor 2 ENCODES a protein that exhibits signaling adaptor activity (ortholog); INVOLVED IN negative regulation of calcium-mediated signaling (ortholog); negative regulation of T cell receptor signaling pathway (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN cytoplasmic vesicle (ortholog); late endosome (ortholog); plasma membrane (ortholog) NW_004955422 24978447 25003732 + 102022398 AGCD01023239;GBDI01326113;XM_005384738;XM_005384739 XP_005384795;XP_005384796 MODEL 8952141 ncrna LOC102010644 uncharacterized LOC102010644 NW_004955445 12260606 12264915 + 102010644 AGCD01039746;GBDF01008996;XR_001235639 MODEL 8701060 pseudo LOC102011405 chromodomain Y-like protein pseudogene NW_004955407 28152182 28153855 - 102011405 AGCD01007576 MODEL 9032728 protein-coding Elof1 elongation factor 1 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN transcription-coupled nucleotide-excision repair (ortholog); FOUND IN chromosome (ortholog); nucleus (ortholog) NW_004955495 2403566 2406182 - 102026651 AGCD01061770;GBDF01005723;XM_005405674;XM_013505116;XM_013505117 XP_005405731;XP_013360570;XP_013360571 MODEL 8984208 pseudo LOC102026157 actin-related protein 2/3 complex subunit 1A pseudogene NW_004955437 21870961 21871695 + 102026157 AGCD01034924 MODEL 8699863 protein-coding Pla2g4f phospholipase A2 group IVF ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); phosphatidylcholine lysophospholipase A1 activity (ortholog); INVOLVED IN arachidonate secretion (ortholog); cellular response to antibiotic (ortholog); fatty acid transport (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955416 8876560 8889764 - 102017867 AGCD01017071;GBBH01062799;XM_005381324;XM_005381325;XM_013512650 XP_005381381;XP_005381382;XP_013368104 MODEL 9053374 ncrna LOC102005410 uncharacterized LOC102005410 NW_004955435 5085524 5096408 - 102005410 AGCD01032876;GBDF01087889;XR_001234879 MODEL 9034594 protein-coding Snip1 Smad nuclear interacting protein 1 ENCODES a protein that exhibits transcription regulator inhibitor activity (ortholog); INVOLVED IN miRNA processing (ortholog); mRNA splicing, via spliceosome (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH ARTERIAL DISSECTION (ortholog); benign epilepsy with centrotemporal spikes (ortholog); Psychomotor Retardation, Epilepsy, and Craniofacial Dysmorphism (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); spliceosomal complex (ortholog) NW_004955452 15352080 15365545 - 102011397 AGCD01044486;GBDF01082251;XM_005395208 XP_005395265 MODEL 8911021 protein-coding Ptrh1 peptidyl-tRNA hydrolase 1 homolog ENCODES a protein that exhibits peptidyl-tRNA hydrolase activity (ortholog); INVOLVED IN rescue of stalled cytosolic ribosome (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN mitochondrion (ortholog) NW_004955419 940508 942375 + 102028195 AGCD01019624;GBDI01009713;XM_005382417 XP_005382474 MODEL 8836354 protein-coding LOC102015624 olfactory receptor 52M1 NW_004955414 20157339 20158292 + 102015624 AGCD01015358;XM_005380049 XP_005380106 MODEL 9044845 protein-coding LOC102025781 taste receptor type 2 member 20-like NW_004955413 8220292 8221227 - 102025781 AGCD01013855;XM_005379633 XP_005379690 MODEL 9028860 protein-coding Serf2 small EDRK-rich factor 2 INVOLVED IN protein destabilization (ortholog) NW_004955416 10251533 10252429 + 102012642 AGCD01017126;GBCB01007574;GBDF01001580;XM_005381409 XP_005381466 MODEL 10223540 protein-coding LOC106147060 collagen alpha-1(III) chain-like NW_004955514 1492100 1492656 + 106147060 AGCD01067054;GBCQ01059369;GBDK01283995;XM_013506811 XP_013362265 MODEL 8993790 protein-coding Rab44 RAB44, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); INVOLVED IN histamine secretion by mast cell (ortholog); histamine secretion mediated by IgE immunoglobulin (ortholog); mast cell degranulation (ortholog); FOUND IN early endosome membrane (ortholog); endoplasmic reticulum membrane (ortholog); lysosomal membrane (ortholog) NW_004955437 6223281 6250068 - 102025839 AGCD01034422;AGCD01034423;AGCD01034424;GBBH01203108;XM_005389639;XM_005389640;XM_005389641;XM_005389642;XM_005389643;XM_005389644;XM_005389645;XM_013517131;XM_013517132 XP_005389696;XP_005389697;XP_005389698;XP_005389699;XP_005389700;XP_005389701;XP_005389702;XP_013372585;XP_013372586 MODEL 8920890 ncrna LOC102012660 uncharacterized LOC102012660 NW_004955422 11202376 11214424 - 102012660 AGCD01022751;GBDF01159067;XR_260856;XR_260857 MODEL 9047238 protein-coding Pdcl phosducin like ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN heterotrimeric G-protein complex assembly (ortholog); negative regulation of protein refolding (ortholog); positive regulation of smoothened signaling pathway (ortholog); FOUND IN cytoplasm (ortholog) NW_004955419 5123490 5132092 + 102004281 AGCD01019783;GBDF01280771;XM_013513301 XP_013368755 MODEL 8701184 protein-coding Tom1l2 target of myb1 like 2 membrane trafficking protein ENCODES a protein that exhibits clathrin binding (ortholog); protein kinase binding (ortholog); INVOLVED IN negative regulation of mitotic nuclear division (ortholog); signal transduction (ortholog) NW_004955577 93877 153381 + 102013775 AGCD01075379;AGCD01075380;AGCD01075381;GBCB01003076;XM_013509625;XM_013509627;XM_013509628;XM_013509629;XR_001232462 XP_013365079;XP_013365081;XP_013365082;XP_013365083 MODEL 9063392 ncrna LOC102023354 uncharacterized LOC102023354 NW_004955416 23969095 23980352 - 102023354 AGCD01017556;AGCD01017557;GBCQ01094488;XR_260414 MODEL 8854352 protein-coding Slitrk6 SLIT and NTRK like family member 6 INVOLVED IN adult locomotory behavior (ortholog); auditory behavior (ortholog); auditory receptor cell morphogenesis (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN cell periphery (ortholog); cell surface (ortholog); plasma membrane (ortholog) NW_004955404 22738080 22744601 + 102005659 AGCD01003774;GBDK01060369;XM_005374121 XP_005374178 MODEL 8753441 protein-coding Parp1 poly(ADP-ribose) polymerase 1 ENCODES a protein that exhibits chromatin binding (ortholog); damaged DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN apoptotic process (ortholog); ATP generation from poly-ADP-D-ribose (ortholog); base-excision repair (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acute Experimental Pancreatitis (ortholog); acute kidney failure (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955489 520875 557609 - 102011552 AGCD01059808;AGCD01059809;GBDI01133041;XM_005404495 XP_005404552 MODEL 8789582 protein-coding Ppp2r5d protein phosphatase 2 regulatory subunit B'delta ENCODES a protein that exhibits protein phosphatase activator activity (ortholog); protein phosphatase regulator activity (ortholog); INVOLVED IN negative regulation of peptidyl-threonine phosphorylation (ortholog); PARTICIPATES IN dopamine signaling pathway; interleukin-2 signaling pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 35 (ortholog); brain disease (ortholog); epilepsy (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); protein phosphatase type 2A complex (ortholog) NW_004955437 8968517 8987680 + 102029443 AGCD01034512;GBCE01097976;GBDF01120912;XM_005389743 XP_005389800 MODEL 8962480 pseudo LOC102003672 60S ribosomal protein L17 pseudogene NW_004955424 27996316 28003860 - 102003672 AGCD01025143;AGCD01025144;XM_005385817 MODEL 8736946 protein-coding Prokr1 prokineticin receptor 1 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); ASSOCIATED WITH Hirschsprung's disease (ortholog); Hyperalgesia (ortholog); long QT syndrome (ortholog) NW_004955424 16287666 16301713 - 102020460 AGCD01024738;GBDJ01323907;XM_005385662 XP_005385719 MODEL 8888147 protein-coding U2af2 U2 small nuclear RNA auxiliary factor 2 ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); enzyme binding (ortholog); molecular function inhibitor activity (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); negative regulation of mRNA splicing, via spliceosome (ortholog); negative regulation of protein ubiquitination (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH developmental delay, dysmorphic facies, and brain anomalies (ortholog); genetic disease (ortholog); leukodystrophy (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955567 683472 699105 - 102013226 AGCD01074424;AGCD01074425;GBDJ01002993;XM_005413290;XM_005413291 XP_005413347;XP_005413348 MODEL 9013310 ncrna LOC102010258 uncharacterized LOC102010258 NW_004955416 28137227 28141716 + 102010258 AGCD01017625;GBDF01281711;XR_260429 MODEL 9012764 protein-coding Psmc3ip PSMC3 interacting protein ENCODES a protein that exhibits DNA binding domain binding (ortholog); identical protein binding (ortholog); nuclear estrogen receptor binding (ortholog); INVOLVED IN androgen receptor signaling pathway (ortholog); estrogen receptor signaling pathway (ortholog); homologous chromosome pairing at meiosis (ortholog); ASSOCIATED WITH 46 XX gonadal dysgenesis (ortholog); ovarian dysgenesis 3 (ortholog); Prostatic Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955451 16464233 16467896 - 102020742 AGCD01043679;GBDF01020452;XM_005394467;XM_013519148 XP_005394524;XP_013374602 MODEL 8799786 ncrna LOC102006507 uncharacterized LOC102006507 NW_004955445 17401781 17432794 - 102006507 AGCD01039886;AGCD01039887;AGCD01039888;GBDF01208938;XR_262343;XR_262344 MODEL 39133447 snorna SNORD96A Small nucleolar RNA SNORD96 family 8882660 protein-coding Rtca RNA 3'-terminal phosphate cyclase ENCODES a protein that exhibits RNA-3'-phosphate cyclase activity (ortholog); INVOLVED IN negative regulation of optical nerve axon regeneration (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955435 5019654 5041611 + 102005077 AGCD01032871;AGCD01032872;AGCD01032873;GBBH01092988;XM_005388796 XP_005388853 MODEL 8777359 pseudo LOC102028853 nuclease-sensitive element-binding protein 1 pseudogene NW_004955474 2144201 2159913 + 102028853 AGCD01054280;AGCD01054281 MODEL 8975785 protein-coding Lgi2 leucine rich repeat LGI family member 2 INVOLVED IN inhibitory synapse assembly (ortholog); ASSOCIATED WITH epilepsy (ortholog) NW_004955480 58661 89906 + 102025461 AGCD01056578;AGCD01056579;GBBH01193047;GBBH01193048;XM_005402459 XP_005402516 MODEL 8989914 pseudo LOC102008359 erythrocyte band 7 integral membrane protein pseudogene NW_004955572 890630 891453 - 102008359 AGCD01074927 MODEL 8847508 pseudo LOC102018692 coiled-coil domain-containing protein 152-like NW_004955457 9051097 9052057 + 102018692 AGCD01046927 MODEL 8799081 ncrna LOC102009475 uncharacterized LOC102009475 NW_004955463 254981 270114 + 102009475 AGCD01049479;GBDF01303373;XR_263138 MODEL 8917659 ncrna LOC102021620 uncharacterized LOC102021620 NW_004955405 19288876 19336365 - 102021620 AGCD01005034;AGCD01005035;GBCB01087858;XR_001235414 MODEL 8986751 protein-coding Por P450 (cytochrome) oxidoreductase ENCODES a protein that exhibits cytochrome-b5 reductase activity, acting on NAD(P)H (ortholog); electron transfer activity (ortholog); enzyme activator activity (ortholog); INVOLVED IN carnitine metabolic process (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); cellular response to gonadotropin stimulus (ortholog); PARTICIPATES IN aldosterone biosynthetic pathway; cortisol biosynthetic pathway; doxorubicin pharmacokinetics pathway; ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); amenorrhea (ortholog); Antley-Bixler syndrome (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955456 14698589 14748520 + 102006877 AGCD01046650;GBDI01012447;XM_005396803;XM_013520565 XP_005396860;XP_013376019 MODEL 8891610 protein-coding LOC102017542 uncharacterized LOC102017542 NW_004955408 29103923 29110123 - 102017542 AGCD01008738;GBDF01128626;XM_013509707;XM_013509711;XR_001232479 XP_013365161;XP_013365165 MODEL 9065111 ncrna LOC102011020 uncharacterized LOC102011020 NW_004955497 1318649 1323855 + 102011020 AGCD01062456;GBCB01078283;XR_264191 MODEL 8792310 protein-coding LOC102006855 ATP-binding cassette sub-family A member 13-like NW_004955765 1665 15270 + 102006855 AGCD01078307;GBDF01026194;XM_013510189 XP_013365643 MODEL 10227828 protein-coding LOC106148153 pre-mRNA-splicing factor cwc22-like NW_004955416 10249786 10250802 + 106148153 AGCD01017125;GBDF01254012;GBDF01254013;XM_013512560 XP_013368014 MODEL 8708902 pseudo LOC102027838 olfactory receptor 51V1-like NW_004955414 21106478 21108278 - 102027838 AGCD01015407 MODEL 8914738 protein-coding Rasgrp1 RAS guanyl releasing protein 1 ENCODES a protein that exhibits calcium ion binding (ortholog); diacylglycerol binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); B cell activation (ortholog); B cell proliferation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); endometriosis (ortholog); immunodeficiency 64 (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955416 5494030 5561608 - 102009602 AGCD01016914;GBCE01059250;GBDK01242028;XM_013512606 XP_013368060 MODEL 8910084 protein-coding Vwa8 von Willebrand factor A domain containing 8 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Developmental Disabilities (ortholog); orofacial cleft (ortholog); FOUND IN mitochondrion (ortholog); peroxisome (ortholog) NW_004955518 4351781 4723479 + 102028887 AGCD01067827;AGCD01067828;AGCD01067829;AGCD01067830;AGCD01067831;AGCD01067832;AGCD01067833;AGCD01067834;AGCD01067835;AGCD01067836;GBCB01043083;GBDI01292258;XM_013506956 XP_013362410 MODEL 8849262 protein-coding Slc3a2 solute carrier family 3 member 2 ENCODES a protein that exhibits aromatic amino acid transmembrane transporter activity (ortholog); double-stranded RNA binding (ortholog); exogenous protein binding (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); cellular response to glucose starvation (ortholog); isoleucine transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); autism spectrum disorder (ortholog); Liver Metastasis (ortholog); FOUND IN amino acid transport complex (ortholog); apical plasma membrane (ortholog); apical pole of neuron (ortholog) NW_004955599 376133 391434 - 102020181 AGCD01076642;AGCD01076643;GBBH01000426;GBDK01018077;XM_013510062 XP_013365516 MODEL 8942501 ncrna LOC102024365 uncharacterized LOC102024365 NW_004955429 22477975 22490414 + 102024365 AGCD01029028;GBDJ01202921;XR_261390;XR_261391 MODEL 8862066 ncrna LOC102005411 uncharacterized LOC102005411 NW_004955435 20027434 20045778 - 102005411 AGCD01033445;GBDF01117536;XR_261728 MODEL 8879718 pseudo LOC102019091 SAP domain-containing ribonucleoprotein pseudogene NW_004955428 19048985 19053511 - 102019091 AGCD01028081;XM_005386848 MODEL 8988738 protein-coding Snn stannin ENCODES a protein that exhibits metal ion binding (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); mitochondrial outer membrane (ortholog) NW_004955442 6959325 6969268 - 102026264 AGCD01037608;GBCE01186579;XM_005391160 XP_005391217 MODEL 8827365 protein-coding Porcn porcupine O-acyltransferase ENCODES a protein that exhibits palmitoleoyltransferase activity (ortholog); Wnt-protein binding (ortholog); INVOLVED IN glycoprotein metabolic process (ortholog); protein lipidation (ortholog); protein palmitoleylation (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); focal dermal hypoplasia (ortholog); genetic disease (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955543 75870 91575 + 102018334 AGCD01071556;AGCD01071557;GBDK01394558;XM_005411256;XM_005411257;XM_013508161;XM_013508162;XM_013508163;XM_013508164 XP_005411313;XP_005411314;XP_013363615;XP_013363616;XP_013363617;XP_013363618 MODEL 8844030 protein-coding Pla2g5 phospholipase A2 group V ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); heparin binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN arachidonate secretion (ortholog); leukotriene biosynthetic process (ortholog); low-density lipoprotein particle remodeling (ortholog); ASSOCIATED WITH familial benign fleck retina (ortholog); late-onset retinal degeneration (ortholog); FOUND IN cell surface (ortholog); early phagosome (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955452 662281 721507 + 102015593 AGCD01043822;AGCD01043823;AGCD01043824;AGCD01043825;AGCD01043826;AGCD01043827;GBDJ01199830;XM_005394670;XM_005394671;XM_005394672;XM_013519728;XM_013519729;XM_013519730 XP_005394727;XP_005394728;XP_005394729;XP_013375182;XP_013375183;XP_013375184 MODEL 10263818 pseudo LOC106147061 zinc finger protein 420 pseudogene NW_004955514 1237 4885 - 106147061 AGCD01066991 MODEL 8735671 protein-coding Trhde thyrotropin releasing hormone degrading enzyme ASSOCIATED WITH long QT syndrome (ortholog) NW_004955405 12229448 12624753 + 102006536 AGCD01004850;AGCD01004851;AGCD01004852;AGCD01004853;AGCD01004854;AGCD01004855;AGCD01004856;AGCD01004857;AGCD01004858;AGCD01004859;GBDI01314318;XM_005374325 XP_005374382 MODEL 8979663 protein-coding Brca1 BRCA1 DNA repair associated ENCODES a protein that exhibits chromatin binding (ortholog); damaged DNA binding (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to indole-3-methanol (ortholog); cellular response to ionizing radiation (ortholog); cellular response to tumor necrosis factor (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; forkhead class A signaling pathway; homologous recombination pathway of double-strand break repair; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Animal Mammary Neoplasms (ortholog); bilateral breast cancer (ortholog); FOUND IN BRCA1-A complex (ortholog); BRCA1-B complex (ortholog); BRCA1-BARD1 complex (ortholog) NW_004955451 16819463 16870780 - 102029928 AGCD01043709;AGCD01043710;AGCD01043711;GBDF01225401;GBDF01304989;JN414194;XM_005394496;XM_013519228;XM_013519229;XM_013519230;XM_013519231;XR_001235969 AEP18221;XP_005394553;XP_013374682;XP_013374683;XP_013374684;XP_013374685 MODEL 8876152 pseudo LOC102030290 non-histone chromosomal protein HMG-17 pseudogene NW_004955463 7616371 7616641 + 102030290 AGCD01049741 MODEL 8879373 pseudo LOC102006508 heterogeneous nuclear ribonucleoprotein K pseudogene NW_004955445 18587531 18589305 + 102006508 AGCD01039906 MODEL 8729739 protein-coding Reep1 receptor accessory protein 1 ENCODES a protein that exhibits microtubule binding (ortholog); olfactory receptor binding (ortholog); INVOLVED IN endoplasmic reticulum tubular network organization (ortholog); protein insertion into membrane (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); autosomal dominant distal hereditary motor neuronopathy 12 (ortholog); autosomal dominant distal hereditary motor neuronopathy 5 (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955424 1369490 1425611 + 102018107 AGCD01024237;GBCE01013291;XM_013514719 XP_013370173 MODEL 9057027 protein-coding LOC102012661 solute carrier family 23 member 1-like NW_004955494 7357079 7405398 + 102012661 AGCD01061551;AGCD01061552;GBDI01178715;XM_005405484;XM_005405485;XM_005405486;XM_013504941;XM_013504942;XM_013504943;XM_013504944 XP_005405541;XP_005405542;XP_005405543;XP_013360395;XP_013360396;XP_013360397;XP_013360398 MODEL 8940499 protein-coding Scube3 signal peptide, CUB domain and EGF like domain containing 3 ENCODES a protein that exhibits BMP binding (ortholog); BMP receptor binding (ortholog); identical protein binding (ortholog); INVOLVED IN positive regulation of BMP signaling pathway (ortholog); positive regulation of osteoblast differentiation (ortholog); positive regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH Dwarfism (ortholog); genetic disease (ortholog); prostate cancer (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955437 3178985 3213772 + 102022425 AGCD01034300;GBDI01201758;GBDJ01353348;XM_005389543;XM_005389544;XM_005389545 XP_005389600;XP_005389601;XP_005389602 MODEL 8820361 ncrna LOC102009476 uncharacterized LOC102009476 NW_004955463 10007303 10028051 - 102009476 AGCD01049804;AGCD01049805;GBDF01223582;XR_263166 MODEL 9029724 protein-coding LOC102028504 uncharacterized LOC102028504 NW_004955460 10263707 10267878 + 102028504 AGCD01048576;GBDF01074142;XM_005397836 XP_005397893 MODEL 8929032 ncrna LOC102026159 uncharacterized LOC102026159 NW_004955438 14506996 14509726 + 102026159 AGCD01035346;GBDF01194797;XR_261932 MODEL 8888498 protein-coding Elovl1 ELOVL fatty acid elongase 1 ENCODES a protein that exhibits fatty acid elongase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); establishment of skin barrier (ortholog); fatty acid elongation, monounsaturated fatty acid (ortholog); ASSOCIATED WITH ICHTHYOTIC KERATODERMA, SPASTICITY, HYPOMYELINATION, AND DYSMORPHIC FACIAL FEATURES (ortholog); optic atrophy (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955537 2945509 2950146 - 102026566 AGCD01070940;GBCE01055429;XM_005410653;XM_013507748 XP_005410710;XP_013363202 MODEL 8810455 protein-coding LOC102010649 zinc finger protein 134 NW_004955584 442199 447345 + 102010649 AGCD01075941;GBDF01124692;XM_005414366;XM_013509874;XM_013509875 XP_005414423;XP_013365328;XP_013365329 MODEL 8796179 protein-coding Ptrh2 peptidyl-tRNA hydrolase 2 ENCODES a protein that exhibits peptidyl-tRNA hydrolase activity (ortholog); INVOLVED IN negative regulation of anoikis (ortholog); negative regulation of gene expression (ortholog); positive regulation of anoikis (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); genetic disease (ortholog); Infantile-Onset Multisystem Neurologic, Endocrine, and Pancreatic Disease (ortholog); FOUND IN cytosol (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955451 3370761 3375979 + 102013236 AGCD01043053;GBDF01192078;XM_005393981 XP_005394038 MODEL 8817424 ncrna LOC102015625 uncharacterized LOC102015625 NW_004955472 3335650 3336983 - 102015625 AGCD01053509;GBDF01013258;XR_263549 MODEL 9065461 pseudo LOC102027170 ethylmalonyl-CoA decarboxylase pseudogene NW_004955414 31475895 31477571 - 102027170 AGCD01015751 MODEL 9062605 protein-coding Rhot1 ras homolog family member T1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); calcium ion binding (ortholog); GDP binding (ortholog); INVOLVED IN cellular homeostasis (ortholog); establishment of mitochondrion localization by microtubule attachment (ortholog); mitochondrial outer membrane permeabilization (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH motor neuron disease (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955481 7149836 7199296 + 102023596 AGCD01057056;AGCD01057057;GBCE01134334;XM_005402812;XM_005402814;XM_013503493;XM_013503494;XM_013503495 XP_005402869;XP_005402871;XP_013358947;XP_013358948;XP_013358949 MODEL 8812727 protein-coding U2surp U2 snRNP associated SURP domain containing ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); U2 snRNP (ortholog) NW_004955508 2880638 2931146 - 102011224 AGCD01065799;GBCE01118464;GBDF01047997;XM_005407733 XP_005407790 MODEL 8978545 protein-coding Sergef secretion regulating guanine nucleotide exchange factor INVOLVED IN negative regulation of protein secretion (ortholog); ASSOCIATED WITH atherosclerosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955414 32579419 32796714 - 102012528 AGCD01015782;AGCD01015783;GBCQ01059662;XM_005380391;XM_005380392;XR_001233167;XR_001233168;XR_001233169;XR_001233170;XR_260218;XR_260219;XR_260220;XR_260221 XP_005380448;XP_005380449 MODEL 8924801 ncrna LOC102028860 uncharacterized LOC102028860 NW_004955482 996337 997740 - 102028860 AGCD01057197;GBDF01144568;XR_263815 MODEL 9003816 ncrna LOC102008361 uncharacterized LOC102008361 NW_004955448 3629090 3639590 + 102008361 AGCD01041336;XR_001235764;XR_262459 MODEL 8755395 protein-coding Pdcl2 phosducin like 2 INVOLVED IN acrosome assembly (ortholog); flagellated sperm motility (ortholog); sperm axoneme assembly (ortholog); ASSOCIATED WITH male infertility (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955447 15364116 15386071 + 102004339 AGCD01041052;GBDF01008116;XM_005392883;XM_005392884;XM_005392885 XP_005392940;XP_005392941;XP_005392942 MODEL 10100645 ncrna LOC106149902 uncharacterized LOC106149902 NW_004955456 14900042 14902337 - 106149902 AGCD01046655;GBDF01013677;XR_001236370 MODEL 8884673 protein-coding Tgs1 trimethylguanosine synthase 1 ENCODES a protein that exhibits RNA cap trimethylguanosine synthase activity (ortholog); INVOLVED IN 7-methylguanosine cap hypermethylation (ortholog); cellular response to fatty acid (ortholog); cellular response to glucose stimulus (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955454 14896085 14937678 + 102009799 AGCD01045479;GBDI01173633;GBDK01020865;XM_005396075 XP_005396132 MODEL 8941779 protein-coding Rab4a RAB4A, member RAS oncogene family ENCODES a protein that exhibits ATPase activator activity (ortholog); ATPase binding (ortholog); G protein activity (ortholog); INVOLVED IN antigen processing and presentation (ortholog); neurotransmitter receptor transport postsynaptic membrane to endosome (ortholog); protein transport (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; platelet-derived growth factor signaling pathway; Rab family mediated signaling pathway; FOUND IN cytoplasm (ortholog); early endosome membrane (ortholog); endosome (ortholog) NW_004955492 8715252 8743432 - 102018840 AGCD01060825;GBDF01087629;GBDJ01234437;XM_005405009 XP_005405066 MODEL 8825724 protein-coding LOC102011407 olfactory receptor 9K2-like NW_004955458 2281743 2282727 + 102011407 AGCD01047223;XM_013520797 XP_013376251 MODEL 10348577 ncrna LOC106147062 uncharacterized LOC106147062 NW_004955514 30315 38953 - 106147062 AGCD01066992;GBCE01179789;XR_001231773 MODEL 9013849 ncrna LOC102003674 uncharacterized LOC102003674 NW_004955427 13594699 13599884 + 102003674 AGCD01027253;GBDF01143677;XR_001234373 MODEL 8970210 pseudo LOC102011021 TATA box-binding protein-associated factor RNA polymerase I subunit D pseudogene NW_004955502 102213 103039 + 102011021 AGCD01064232 MODEL 8708520 protein-coding Slain1 SLAIN motif family member 1 NW_004955404 29537497 29594617 - 102015594 AGCD01003978;AGCD01003979;GBBH01069566;GBDF01054223;XM_005374150;XM_005374151 XP_005374207;XP_005374208 MODEL 8801401 protein-coding LOC102017543 olfactory receptor 10P1-like NW_004955458 3094534 3095475 + 102017543 AGCD01047270;XM_005397250 XP_005397307 MODEL 9030225 pseudo LOC102027839 60S ribosomal protein L23a pseudogene NW_004955470 5753693 5754369 + 102027839 AGCD01052759 MODEL 8914700 protein-coding Ppp2r5e protein phosphatase 2 regulatory subunit B'epsilon ASSOCIATED WITH Chromosomal Instability (ortholog); Micronuclei, Chromosome-Defective (ortholog); transient cerebral ischemia (ortholog); FOUND IN cytosol (ortholog); protein phosphatase type 2A complex (ortholog) NW_004955466 6263338 6420685 + 102008518 AGCD01050923;AGCD01050924;AGCD01050925;AGCD01050926;AGCD01050927;GBDF01126130;XM_005399153;XM_005399154;XM_013521973 XP_005399210;XP_005399211;XP_013377427 MODEL 8742920 ncrna LOC102010261 uncharacterized LOC102010261 NW_004955482 6580525 6586861 - 102010261 AGCD01057403;XR_263839 MODEL 8763174 protein-coding Psmc4 proteasome 26S subunit, ATPase 4 INVOLVED IN blastocyst development (ortholog); regulation of AMPA receptor activity (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); FOUND IN cytosol (ortholog); cytosolic proteasome complex (ortholog); inclusion body (ortholog) NW_004955578 1113445 1120050 - 102021402 AGCD01075510;GBCC01049534;XM_005414079 XP_005414136 MODEL 9026813 protein-coding Vwc2 von Willebrand factor C domain containing 2 INVOLVED IN negative regulation of BMP signaling pathway (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); positive regulation of cell-substrate adhesion (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); basement membrane (ortholog); extracellular matrix (ortholog) NW_004955456 3949885 4075622 - 102006099 AGCD01046288;GBDI01379282;XM_013520509 XP_013375963 MODEL 8961483 ncrna LOC102018695 uncharacterized LOC102018695 NW_004955458 9885317 9887026 - 102018695 AGCD01047664;GBDK01334184;XR_262992 MODEL 8995426 protein-coding Rtcb RNA 2',3'-cyclic phosphate and 5'-OH ligase ENCODES a protein that exhibits protein guanylyltransferase activity (ortholog); RNA ligase (GTP) activity (ortholog); vinculin binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); IRE1-mediated unfolded protein response (ortholog); mRNA splicing, via endonucleolytic cleavage and ligation (ortholog); PARTICIPATES IN tRNA maturation pathway; FOUND IN catalytic complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955405 41360370 41375215 - 102029147 AGCD01005548;AGCD01005549;GBCC01046704;XM_013519150 XP_013374604 MODEL 9066991 protein-coding LOC102015626 olfactory receptor 10T2-like NW_004955414 23496142 23497107 + 102015626 AGCD01015500;XM_005380517 XP_005380574 MODEL 8928448 protein-coding LOC102005416 complement C4-A NW_004955437 492806 505554 + 102005416 AGCD01034137;AGCD01034138;GBCE01002333;XM_013516778 XP_013372232 MODEL 8747116 protein-coding LOC102019093 vomeronasal type-1 receptor 90-like NW_004955429 12472731 12473747 - 102019093 AGCD01028719;XM_005387251 XP_005387308 MODEL 8921083 protein-coding Tomm20 translocase of outer mitochondrial membrane 20 ENCODES a protein that exhibits mitochondrion targeting sequence binding (ortholog); transmembrane protein transporter activity (ortholog); INVOLVED IN protein import into mitochondrial matrix (ortholog); protein localization to mitochondrion (ortholog); response to 3,3',5-triiodo-L-thyronine (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; presequence pathway of mitochondrial protein import; ASSOCIATED WITH muscular atrophy (ortholog); FOUND IN cell periphery (ortholog); migrasome (ortholog); mitochondria-associated endoplasmic reticulum membrane contact site (ortholog) NW_004955492 4759438 4771060 + 102025369 AGCD01060729;GBDF01010948;XM_005404954 XP_005405011 MODEL 8861157 ncrna LOC102021621 uncharacterized LOC102021621 NW_004955405 29311366 29324168 - 102021621 AGCD01005251;GBDF01207441;XR_259409 MODEL 8811117 protein-coding LOC102006858 translationally-controlled tumor protein NW_004957308 14 1574 + 102006858 AGCD01080704;GBDI01329672;GBDJ01414259;XM_005415227 XP_005415284 MODEL 8971402 pseudo LOC102028862 heat shock 70 kDa protein 14 pseudogene NW_004955482 5978526 5979743 + 102028862 AGCD01057360 MODEL 8892486 protein-coding Postn periostin ENCODES a protein that exhibits heparin binding (ortholog); metal ion binding (ortholog); INVOLVED IN bone regeneration (ortholog); cell adhesion (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); aggressive periodontitis (ortholog); aspirin-induced respiratory disease (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog); neuromuscular junction (ortholog) NW_004955431 8510646 8544901 + 102022213 AGCD01030127;AGCD01030128;GBDI01138507;XM_005387655;XM_005387656;XM_005387657;XM_005387658;XM_005387659;XM_005387661;XM_013515886 XP_005387712;XP_005387713;XP_005387714;XP_005387715;XP_005387716;XP_005387718;XP_013371340 MODEL 8921758 protein-coding Prokr2 prokineticin receptor 2 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN circadian rhythm (ortholog); ASSOCIATED WITH amenorrhea (ortholog); amphetamine abuse (ortholog); epilepsy (ortholog); FOUND IN plasma membrane (ortholog) NW_004955415 15867017 15878471 - 102011652 AGCD01016363;GBCE01138495;XM_005380830;XM_005380831;XM_013512101 XP_005380887;XP_005380888;XP_013367555 MODEL 10332467 ncrna LOC106148154 uncharacterized LOC106148154 NW_004955416 12000302 12027453 + 106148154 AGCD01017196;GBCQ01193472;XR_001233334 MODEL 8917860 protein-coding Slk STE20 like kinase ENCODES a protein that exhibits histone kinase activity (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to tumor necrosis factor (ortholog); cellular response to type II interferon (ortholog); cytoplasmic microtubule organization (ortholog); ASSOCIATED WITH Reperfusion Injury (ortholog); substance-related disorder (ortholog); FOUND IN cell leading edge (ortholog); cytoplasm (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955485 6617698 6685220 - 102027985 AGCD01058622;AGCD01058623;AGCD01058624;AGCD01058625;GBDF01188499;GBDI01178670;XM_005403794 XP_005403851 MODEL 9032041 protein-coding LOC102025783 olfactory receptor 52E1 NW_004955414 20556477 20557381 - 102025783 AGCD01015380;XM_013511721 XP_013367175 MODEL 8785570 pseudo LOC102003677 protein phosphatase 1 regulatory subunit 42-like NW_004955511 3024029 3025033 - 102003677 AGCD01066439 MODEL 8743252 ncrna LOC102024366 uncharacterized LOC102024366 NW_004955430 7934793 7959906 - 102024366 AGCD01029378;GBDF01190263;XR_001234568;XR_001234569;XR_001234570 MODEL 8770191 protein-coding Rasgrp2 RAS guanyl releasing protein 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH genetic disease (ortholog); hemorrhagic disease (ortholog); leukocyte adhesion deficiency 3 (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955422 20426241 20440540 + 102003249 AGCD01023080;AGCD01023081;GBDJ01030510;GBDK01273984;XM_005384568 XP_005384625 MODEL 8985404 protein-coding Slc40a1 solute carrier family 40 member 1 ENCODES a protein that exhibits ferrous iron transmembrane transporter activity (ortholog); identical protein binding (ortholog); iron ion transmembrane transporter activity (ortholog); INVOLVED IN endothelium development (ortholog); intracellular iron ion homeostasis (ortholog); iron ion export across plasma membrane (ortholog); PARTICIPATES IN iron efflux pathway; ASSOCIATED WITH aceruloplasminemia (ortholog); anemia (ortholog); autistic disorder (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog); synaptic vesicle (ortholog) NW_004955403 9253734 9271732 + 102007721 AGCD01001904;GBCE01003262;XM_005373321 XP_005373378 MODEL 616940616 snorna SNORA12 small nucleolar RNA, H/ACA box 12 8890897 ncrna LOC102023356 uncharacterized LOC102023356 NW_004955417 28323417 28329404 + 102023356 AGCD01018579;GBDJ01104529;XR_001233405;XR_260508 MODEL 8707548 pseudo LOC102027172 tripartite motif-containing protein 52-like NW_004955473 7795328 7799661 - 102027172 AGCD01054040 MODEL 8853049 protein-coding Rhot2 ras homolog family member T2 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); GDP binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN cellular homeostasis (ortholog); mitochondrial outer membrane permeabilization (ortholog); mitochondrion transport along microtubule (ortholog); PARTICIPATES IN mitochondria transport pathway; FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955442 16528886 16534856 - 102021053 AGCD01037901;GBCE01095142;XM_005391623;XM_005391624;XM_013517763 XP_005391680;XP_005391681;XP_013373217 MODEL 8959247 ncrna LOC102008363 uncharacterized LOC102008363 NW_004955449 1293468 1297009 + 102008363 AGCD01041795;GBDF01187862;XR_262482 MODEL 8744441 protein-coding Parp10 poly(ADP-ribose) polymerase family member 10 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); K63-linked polyubiquitin modification-dependent protein binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); INVOLVED IN chromatin organization (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of fibroblast proliferation (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Developmental Disabilities (ortholog); epidermolysis bullosa simplex with muscular dystrophy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955454 2644718 2651962 - 102018889 AGCD01045026;GBDI01223645;XM_005395834 XP_005395891 MODEL 8857165 protein-coding Trhr thyrotropin releasing hormone receptor ENCODES a protein that exhibits identical protein binding (ortholog); thyrotropin-releasing hormone receptor activity (ortholog); INVOLVED IN positive regulation of cytosolic calcium ion concentration (ortholog); positive regulation of protein-containing complex assembly (ortholog); ASSOCIATED WITH congenital hypothyroidism (ortholog); congenital nongoitrous hypothyroidism 7 (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955417 16529293 16565359 + 102021761 AGCD01018264;AGCD01018265;AGCD01018266;XM_005381876 XP_005381933 MODEL 8717373 ncrna LOC102015630 uncharacterized LOC102015630 NW_004955476 6348897 6368660 - 102015630 AGCD01055328;AGCD01055329;AGCD01055330;GBBH01045751;XR_001230802;XR_263624 MODEL 8768024 ncrna LOC102021625 uncharacterized LOC102021625 NW_004955454 1559046 1567112 + 102021625 AGCD01044973;GBCE01105695;XR_001236256;XR_001236257 MODEL 8945436 protein-coding Reep2 receptor accessory protein 2 ENCODES a protein that exhibits taste receptor binding (ortholog); INVOLVED IN endoplasmic reticulum tubular network organization (ortholog); protein transport into membrane raft (ortholog); sensory perception of bitter taste (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 5A (ortholog); hereditary spastic paraplegia 72A (ortholog); FOUND IN cytoplasmic microtubule (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955418 2018891 2024545 - 102026866 AGCD01018739;GBCE01152326;XM_005382101;XM_005382102;XM_005382103 XP_005382158;XP_005382159;XP_005382160 MODEL 39133737 snorna SNORD97 small nucleolar RNA, C/D box 97 8835217 protein-coding Th tyrosine hydroxylase ENCODES a protein that exhibits amino acid binding (ortholog); dopamine binding (ortholog); enzyme binding (ortholog); INVOLVED IN aminergic neurotransmitter loading into synaptic vesicle (ortholog); animal organ morphogenesis (ortholog); catecholamine biosynthetic process (ortholog); PARTICIPATES IN aromatic L-amino acid decarboxylase deficiency pathway; catecholamine biosynthetic pathway; dopamine biosynthetic pathway; ASSOCIATED WITH autosomal recessive Segawa syndrome (ortholog); brain disease (ortholog); Brain Injuries (ortholog); FOUND IN neuron projection terminus; perikaryon; axon (ortholog) NW_004955422 13943590 13951102 - 102006672 AGCD01022843;GBDF01056603;XM_005384197 XP_005384254 MODEL 8994607 pseudo LOC102026160 dual specificity mitogen-activated protein kinase kinase 4 pseudogene NW_004955546 82780 83955 + 102026160 AGCD01071948 MODEL 8892706 pseudo LOC102027843 60S ribosomal protein L6-like NW_004955474 1279591 1290119 + 102027843 AGCD01054245;AGCD01054246 MODEL 8887057 ncrna LOC102010653 uncharacterized LOC102010653 NW_004955403 10370654 10380440 + 102010653 AGCD01001921;GBDF01176244;XR_001234452;XR_001234453;XR_259166 MODEL 8890208 protein-coding Ptrhd1 peptidyl-tRNA hydrolase domain containing 1 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); NEURODEVELOPMENTAL DISORDER WITH EARLY-ONSET PARKINSONISM AND BEHAVIORAL ABNORMALITIES (ortholog); Parkinsonism (ortholog); FOUND IN mitochondrion (ortholog) NW_004955469 6909627 6913411 - 102030622 AGCD01052399;GBCQ01099830;XM_005400397 XP_005400454 MODEL 8934062 ncrna LOC102010262 uncharacterized LOC102010262 NW_004955482 9098479 9099552 - 102010262 AGCD01057562;GBDF01226253;XR_263851 MODEL 8821751 protein-coding Lgi3 leucine rich repeat LGI family member 3 INVOLVED IN regulation of exocytosis (ortholog); ASSOCIATED WITH INTELLECTUAL DEVELOPMENTAL DISORDER WITH MUSCLE TONE ABNORMALITIES AND DISTAL SKELETAL DEFECTS (ortholog); FOUND IN extracellular region (ortholog); juxtaparanode region of axon (ortholog); synaptic vesicle (ortholog) NW_004955403 45634237 45644172 - 102004228 AGCD01002824;GBDK01189875;XM_005373650;XM_013513776 XP_005373707;XP_013369230 MODEL 9063130 protein-coding Pla2g6 phospholipase A2 group VI ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); ATP-dependent protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN antibacterial humoral response (ortholog); cardiolipin acyl-chain remodeling (ortholog); maternal process involved in female pregnancy (ortholog); PARTICIPATES IN angiotensin II signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Binge Drinking (ortholog); cerebellar hypoplasia (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); mitochondrion (ortholog) NW_004955413 24431592 24482229 - 102015394 AGCD01014367;AGCD01014368;GBBH01227983;XM_005379242;XM_005379243 XP_005379299;XP_005379300 MODEL 150537113 snorna SNORA13 small nucleolar RNA, H/ACA box 13 8940082 ncrna LOC102006510 uncharacterized LOC102006510 NW_004955576 595097 604134 + 102006510 AGCD01075295;AGCD01075296;GBDF01017473;XR_001232460;XR_265072 MODEL 8857109 protein-coding Psmc5 proteasome 26S subunit, ATPase 5 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); DNA-binding transcription factor binding (ortholog); general transcription initiation factor binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of inclusion body assembly (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); Neurodevelopmental Disorders (ortholog); Stevens-Johnson syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955478 7996902 8002183 - 102019597 AGCD01056005;GBDK01011483;XM_005402183 XP_005402240 MODEL 10359006 ncrna LOC106149903 uncharacterized LOC106149903 NW_004955456 5894387 5943914 + 106149903 AGCD01046357;AGCD01046358;GBDJ01298811;XR_001236371;XR_001236372 MODEL 8917459 pseudo LOC102012662 protein kinase C iota type pseudogene NW_004955422 13396657 13398480 + 102012662 AGCD01022823 MODEL 8999503 protein-coding Brca2 BRCA2 DNA repair associated ENCODES a protein that exhibits double-stranded DNA binding (ortholog); gamma-tubulin binding (ortholog); histone acetyltransferase activity (ortholog); INVOLVED IN brain development (ortholog); cell population proliferation (ortholog); cellular response to ionizing radiation (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH atrophy of testis (ortholog); bilateral breast cancer (ortholog); breast cancer (ortholog); FOUND IN BRCA2-MAGE-D1 complex (ortholog); centrosome (ortholog); chromosome (ortholog) NW_004955431 13449287 13526878 - 102011896 AGCD01030308;GBCB01111140;JN414336;XM_005387715;XM_005387716;XM_005387717;XM_005387718;XM_005387719;XM_005387720;XM_013515889;XM_013515890 AEP18373;XP_005387772;XP_005387773;XP_005387774;XP_005387775;XP_005387776;XP_005387777;XP_013371343;XP_013371344 MODEL 8750663 protein-coding Scx scleraxis bHLH transcription factor ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN BMP signaling pathway (ortholog); cell differentiation (ortholog); cellular response to BMP stimulus (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955454 2886981 2888829 + 102018058 AGCD01045039;GBCB01079555;GBCQ01092845;XM_013520103 XP_013375557 MODEL 8805472 protein-coding LOC102028868 uncharacterized LOC102028868 NW_004955491 4979280 4981120 - 102028868 AGCD01060466;GBDF01075831;XM_005404892 XP_005404949 MODEL 8906226 protein-coding Rab4b RAB4B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GTPase activity (ortholog); INVOLVED IN D-glucose import across plasma membrane (ortholog); early endosome to Golgi transport (ortholog); endosomal vesicle fusion (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN early endosome membrane (ortholog); insulin-responsive compartment (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955578 559029 568966 - 102004532 AGCD01075489;GBDI01109935;XM_005414016;XM_005414017;XM_005414018;XM_013509647;XR_001232465;XR_265084 XP_005414073;XP_005414074;XP_005414075;XP_013365101 MODEL 8796521 protein-coding Tomm22 translocase of outer mitochondrial membrane 22 ENCODES a protein that exhibits mitochondrion targeting sequence binding (ortholog); transmembrane protein transporter activity (ortholog); INVOLVED IN positive regulation of apoptotic process (ortholog); protein import into mitochondrial matrix (ortholog); protein insertion into mitochondrial membrane (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; presequence pathway of mitochondrial protein import; FOUND IN membrane (ortholog); mitochondrial outer membrane (ortholog); mitochondrial outer membrane translocase complex (ortholog) NW_004955413 24799735 24801820 + 102022583 AGCD01014379;GBDF01048765;XM_005379268 XP_005379325 MODEL 8944041 protein-coding Prom1 prominin 1 ENCODES a protein that exhibits actinin binding (ortholog); cadherin binding (ortholog); INVOLVED IN camera-type eye photoreceptor cell differentiation (ortholog); glomerular parietal epithelial cell differentiation (ortholog); photoreceptor cell maintenance (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); Colorectal Neoplasms (ortholog); cone-rod dystrophy (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); cell surface (ortholog) NW_004955480 7955501 8059537 + 102013828 AGCD01056713;AGCD01056714;AGCD01056715;GBBH01213994;XM_005402515;XM_005402516;XM_005402519;XM_013503331 XP_005402572;XP_005402573;XP_005402576;XP_013358785 MODEL 8760621 protein-coding Elovl2 ELOVL fatty acid elongase 2 ENCODES a protein that exhibits acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); fatty acid elongase activity (ortholog); INVOLVED IN fatty acid biosynthetic process (ortholog); fatty acid elongation, polyunsaturated fatty acid (ortholog); very long-chain fatty acid biosynthetic process (ortholog); ASSOCIATED WITH male infertility (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955465 3413923 3433558 + 102019043 AGCD01050378;GBDJ01127241;XM_005398829 XP_005398886 MODEL 8705185 protein-coding Pot1 protection of telomeres 1 ENCODES a protein that exhibits 8-hydroxy-2'-deoxyguanosine DNA binding (ortholog); DEAD/H-box RNA helicase binding (ortholog); G-rich single-stranded DNA binding (ortholog); INVOLVED IN establishment of protein localization to telomere (ortholog); negative regulation of telomere maintenance via telomerase (ortholog); positive regulation of DNA strand elongation (ortholog); ASSOCIATED WITH aplastic anemia (ortholog); Cerebroretinal Microangiopathy with Calcifications and Cysts 3 (ortholog); cholecystitis (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear telomere cap complex (ortholog); nucleoplasm (ortholog) NW_004955479 6140599 6230512 - 102018183 AGCD01056377;AGCD01056378;AGCD01056379;GBDF01156854;XM_005402344;XM_005402345;XM_005402346;XM_013503293;XR_001230883 XP_005402401;XP_005402402;XP_005402403;XP_013358747 MODEL 8829377 ncrna LOC102025784 uncharacterized LOC102025784 NW_004955415 29864376 29866944 - 102025784 AGCD01016655;GBDF01159262;XR_260325 MODEL 8729976 protein-coding Serinc1 serine incorporator 1 ENCODES a protein that exhibits acetyltransferase activator activity (ortholog); enzyme binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN membrane biogenesis (ortholog); phosphatidylserine metabolic process (ortholog); sphingolipid metabolic process (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955436 4414629 4435353 - 102025505 AGCD01033663;AGCD01033664;AGCD01033665;GBCE01004273;XM_005389150 XP_005389207 MODEL 9031584 protein-coding LOC102030292 olfactory receptor 145 NW_004955412 25416408 25417831 - 102030292 AGCD01013151;GBDF01165112;XM_005378653 XP_005378710 MODEL 9000933 protein-coding Pdcl3 phosducin like 3 ENCODES a protein that exhibits protein folding chaperone (ortholog); vascular endothelial growth factor receptor 2 binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); angiogenesis (ortholog); cellular response to heat (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955470 6553450 6563814 + 102016045 AGCD01052773;GBDF01302066;XM_005400758 XP_005400815 MODEL 9049102 pseudo LOC102009479 60S ribosomal protein L26-like NW_004955466 1763067 1764140 + 102009479 AGCD01050717 MODEL 8804403 protein-coding LOC102018698 laminin subunit beta-4 NW_004955410 12319755 12419631 - 102018698 AGCD01010852;AGCD01010853;AGCD01010854;AGCD01010855;AGCD01010856;AGCD01010857;GBDK01203911;XM_013510493 XP_013365947 MODEL 8773506 protein-coding Slc41a1 solute carrier family 41 member 1 ENCODES a protein that exhibits magnesium ion transmembrane transporter activity (ortholog); magnesium:sodium antiporter activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN cellular response to magnesium ion (ortholog); intracellular magnesium ion homeostasis (ortholog); magnesium ion transmembrane transport (ortholog); ASSOCIATED WITH Nephronophthisis-like Nephropathy 2 (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955406 41481831 41502992 - 102013380 AGCD01006685;GBCQ01039252;XM_005375375;XM_005375376 XP_005375432;XP_005375433 MODEL 8969408 pseudo LOC102011022 zinc finger protein 649-like NW_004955503 3712980 3714698 + 102011022 AGCD01064640 MODEL 8945604 protein-coding LOC102005424 trafficking protein particle complex subunit 6A NW_004955555 2169073 2183696 - 102005424 AGCD01073131;GBCQ01014265;XM_005412499;XM_005412500;XM_005412502;XM_013508760;XM_013508761;XM_013508762;XM_013508763 XP_005412556;XP_005412557;XP_005412559;XP_013364214;XP_013364215;XP_013364216;XP_013364217 MODEL 9038940 pseudo LOC102008374 ubiquitin-40S ribosomal protein S27a pseudogene NW_004955452 16615403 16615951 + 102008374 AGCD01044520 MODEL 9037384 ncrna LOC102028507 uncharacterized LOC102028507 NW_004955463 14459008 14462087 - 102028507 AGCD01049910;GBBH01204562;XR_263178 MODEL 9039473 ncrna LOC102006859 uncharacterized LOC102006859 NW_004955451 17177722 17181204 - 102006859 AGCD01043726;AGCD01043727;XR_262622 MODEL 8699698 protein-coding LOC102011408 zinc finger protein 354A NW_004955408 1675669 1691620 + 102011408 AGCD01007971;AGCD01007972;AGCD01007973;GBCB01038314;GBCB01038318;XM_013507993 XP_013363447 MODEL 8803913 protein-coding Parp11 poly(ADP-ribose) polymerase family member 11 ENCODES a protein that exhibits NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); NAD+-protein-aspartate ADP-ribosyltransferase activity (ortholog); INVOLVED IN nuclear envelope organization (ortholog); protein auto-ADP-ribosylation (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; FOUND IN nuclear body (ortholog); nuclear envelope (ortholog); nucleoplasm (ortholog) NW_004955413 1549572 1682395 - 102027503 AGCD01013522;AGCD01013523;AGCD01013524;AGCD01013525;AGCD01013526;AGCD01013527;GBDI01319482;XM_005378723;XM_013511662;XM_013511664;XM_013511665;XR_001233047 XP_005378780;XP_013367116;XP_013367118;XP_013367119 MODEL 8866975 pseudo LOC102003679 glutamine synthetase pseudogene NW_004955431 4833847 4835235 + 102003679 AGCD01030014 MODEL 39133675 snorna U3 Small nucleolar RNA U3 8876793 ncrna LOC102024368 uncharacterized LOC102024368 NW_004955431 15852819 15857933 + 102024368 AGCD01030364;GBDF01280634;XR_261481 MODEL 8795692 protein-coding Slmap sarcolemma associated protein ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN negative regulation of hippo signaling (ortholog); protein localization to plasma membrane (ortholog); regulation of membrane depolarization during cardiac muscle cell action potential (ortholog); ASSOCIATED WITH Brugada syndrome (ortholog); cardiac arrest (ortholog); long QT syndrome (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog); FAR/SIN/STRIPAK complex (ortholog) NW_004955430 7470823 7620101 + 102016939 AGCD01029353;AGCD01029354;AGCD01029355;AGCD01029356;AGCD01029357;AGCD01029358;GBBH01007453;GBDF01076825;XM_005387415 XP_005387472 MODEL 10187384 ncrna LOC106147063 uncharacterized LOC106147063 NW_004955408 31085631 31093142 + 106147063 AGCD01008821;XR_001231774 MODEL 8942319 protein-coding Prom2 prominin 2 ENCODES a protein that exhibits cholesterol binding (ortholog); INVOLVED IN negative regulation of caveolin-mediated endocytosis (ortholog); negative regulation of pinocytosis (ortholog); positive regulation of cell projection organization (ortholog); FOUND IN cell surface (ortholog); cilium (ortholog); cytoplasmic vesicle (ortholog) NW_004955470 3524900 3538882 + 102012185 AGCD01052703;GBCQ01040977;XM_005400644 XP_005400701 MODEL 8840949 protein-coding LOC102019094 mammaglobin-A-like NW_004955511 6298385 6301018 - 102019094 AGCD01066600;XM_005408170 XP_005408227 MODEL 9012039 protein-coding Vwc2l von Willebrand factor C domain containing 2 like INVOLVED IN negative regulation of BMP signaling pathway (ortholog); positive regulation of neuron differentiation (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); extracellular region (ortholog) NW_004955457 1392622 1540314 - 102021522 AGCD01046723;AGCD01046724;AGCD01046725;AGCD01046726;AGCD01046727;GBDF01130103;XM_013520670;XM_013520671 XP_013376124;XP_013376125 MODEL 8764700 protein-coding Rasgrp3 RAS guanyl releasing protein 3 ENCODES a protein that exhibits GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); kinase binding (ortholog); INVOLVED IN Ras protein signal transduction (ortholog); ASSOCIATED WITH head and neck squamous cell carcinoma (ortholog); hypertension (ortholog); systemic lupus erythematosus (ortholog); FOUND IN cytoplasm (ortholog); guanyl-nucleotide exchange factor complex (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955441 1679258 1786397 + 102025514 AGCD01036756;AGCD01036757;GBCE01012394;XM_005390850;XM_005390851;XM_005390852;XM_005390853;XM_005390854;XM_005390855;XM_005390856;XM_013517629 XP_005390907;XP_005390908;XP_005390909;XP_005390910;XP_005390911;XP_005390912;XP_005390913;XP_013373083 MODEL 8816092 protein-coding LOC102027173 uncharacterized LOC102027173 NW_004955415 11313707 11489288 - 102027173 AGCD01016156;AGCD01016157;AGCD01016158;AGCD01016159;AGCD01016160;AGCD01016161;AGCD01016162;AGCD01016163;XM_013512123 XP_013367577 MODEL 8741444 protein-coding Rtel1 regulator of telomere elongation helicase 1 ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); DNA helicase activity (ortholog); INVOLVED IN DNA strand displacement (ortholog); mitotic telomere maintenance via semi-conservative replication (ortholog); negative regulation of DNA recombination (ortholog); ASSOCIATED WITH autosomal recessive dyskeratosis congenita 5 (ortholog); childhood astrocytic tumor (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear membrane (ortholog); nuclear speck (ortholog) NW_004955528 531680 578003 - 102007691 AGCD01069537;AGCD01069538;GBDJ01227066;XM_013507437;XM_013507438;XM_013507439;XM_013507440;XM_013507441;XM_013507442;XM_013507443;XM_013507444;XM_013507445;XR_001231981 XP_013362891;XP_013362892;XP_013362893;XP_013362894;XP_013362895;XP_013362896;XP_013362897;XP_013362898;XP_013362899 MODEL 8749426 protein-coding Rhou ras homolog family member U ENCODES a protein that exhibits GTPase activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); G1/S transition of mitotic cell cycle (ortholog); positive regulation of focal adhesion disassembly (ortholog); FOUND IN focal adhesion (ortholog); Golgi membrane (ortholog); plasma membrane (ortholog) NW_004955492 8949003 8955502 - 102027538 AGCD01060832;GBCB01088846;GBDJ01277125;XM_005405025 XP_005405082 MODEL 8901048 protein-coding Slain2 SLAIN motif family member 2 INVOLVED IN cytoplasmic microtubule organization (ortholog); microtubule nucleation (ortholog); positive regulation of microtubule polymerization (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); ciliary tip (ortholog) NW_004955443 134631 231866 - 102023303 AGCD01038090;AGCD01038091;AGCD01038092;AGCD01038093;AGCD01038094;GBDI01178119;XM_005391877;XM_005391878;XM_013518102;XM_013518103 XP_005391934;XP_005391935;XP_013373556;XP_013373557 MODEL 10242426 ncrna LOC106148155 uncharacterized LOC106148155 NW_004955416 27567002 27586715 + 106148155 AGCD01017618;GBCE01015929;XR_001233335;XR_001233336 MODEL 8765934 protein-coding Ppp3ca protein phosphatase 3 catalytic subunit alpha ENCODES a protein that exhibits ATPase binding (ortholog); calcium-dependent protein serine/threonine phosphatase activity (ortholog); calmodulin binding (ortholog); INVOLVED IN calcineurin-mediated signaling (ortholog); calcineurin-NFAT signaling cascade (ortholog); calcium ion transport (ortholog); PARTICIPATES IN calcineurin signaling pathway; dopamine signaling pathway; interleukin-12 signaling pathway; ASSOCIATED WITH Arthrogryposis, Cleft Palate, Craniosynostosis, and Impaired Intellectual Development (ortholog); autism spectrum disorder (ortholog); Brain Injuries (ortholog); FOUND IN calcineurin complex (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955496 6934542 7059745 + 102019410 AGCD01062372;GBCB01004825;GBCQ01066605;XM_013505393 XP_013360847 MODEL 8755955 protein-coding Pde10a phosphodiesterase 10A ENCODES a protein that exhibits 3',5'-cGMP-stimulated cyclic-nucleotide phosphodiesterase activity (ortholog); 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); INVOLVED IN cAMP catabolic process (ortholog); cGMP catabolic process (ortholog); regulation of adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); Infantile-Onset Limb and Orofacial Dyskinesia (ortholog); FOUND IN cytosol (ortholog); extrinsic component of postsynaptic density membrane (ortholog); glutamatergic synapse (ortholog) NW_004955439 16114530 16370648 + 102030348 AGCD01036018;AGCD01036019;AGCD01036020;AGCD01036021;AGCD01036022;GBDF01010059;XM_005390671 XP_005390728 MODEL 8877944 protein-coding Triap1 TP53 regulated inhibitor of apoptosis 1 ENCODES a protein that exhibits p53 binding (ortholog); phosphatidic acid transfer activity (ortholog); INVOLVED IN cellular response to UV (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); mitotic G1 DNA damage checkpoint signaling (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrion (ortholog); protein-containing complex (ortholog) NW_004955455 11195399 11198402 + 102011402 AGCD01045986;GBCQ01036220;XM_005396508 XP_005396565 MODEL 8946633 ncrna LOC102021628 uncharacterized LOC102021628 NW_004955407 40113326 40117575 + 102021628 AGCD01007838;GBDF01144645;XR_259633 MODEL 8867283 ncrna LOC102015631 uncharacterized LOC102015631 NW_004955416 19735665 19997148 + 102015631 AGCD01017439;AGCD01017440;AGCD01017441;AGCD01017442;AGCD01017443;AGCD01017444;AGCD01017445;AGCD01017446;AGCD01017447;AGCD01017448;GBCE01037520;XR_001233355;XR_001233356;XR_001233357;XR_001233358;XR_001233359;XR_001233360;XR_001233361;XR_001233362;XR_001233363;XR_001233364 MODEL 39132936 snorna SNORD98 small nucleolar RNA, C/D box 98 8896792 protein-coding Reep3 receptor accessory protein 3 INVOLVED IN mitotic nuclear membrane reassembly (ortholog); nuclear envelope organization (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog) NW_004955425 16633900 16689549 + 102026234 AGCD01025615;AGCD01025616;AGCD01025617;GBDJ01126439;XM_013514852;XM_013514853;XM_013514854 XP_013370306;XP_013370307;XP_013370308 MODEL 8993411 protein-coding Scyl1 SCY1 like pseudokinase 1 INVOLVED IN inflammatory response (ortholog); intracellular protein localization (ortholog); neuron development (ortholog); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 21 (ortholog); genetic disease (ortholog); hereditary ataxia (ortholog); FOUND IN cis-Golgi network (ortholog); COPI vesicle coat (ortholog); cytoplasm (ortholog) NW_004955422 19730224 19742348 - 102008232 AGCD01023030;AGCD01023031;GBCQ01036441;XM_005384488 XP_005384545 MODEL 8808594 protein-coding LOC102023357 uncharacterized LOC102023357 NW_004955417 30963477 30973283 + 102023357 AGCD01018635;GBCQ01015420;XM_005382001 XP_005382058 MODEL 8779805 protein-coding LOC102027845 cytochrome c oxidase subunit 8B, mitochondrial-like NW_004955476 11780922 11782144 + 102027845 AGCD01055474;GBDJ01188613;XM_005401879 XP_005401936 MODEL 8921510 protein-coding Thada THADA armadillo repeat containing ENCODES a protein that exhibits enzyme regulator activity (ortholog); INVOLVED IN lipid homeostasis (ortholog); negative regulation of endoplasmic reticulum calcium ion concentration (ortholog); tRNA methylation (ortholog); ASSOCIATED WITH Meniere's disease (ortholog); type 2 diabetes mellitus (ortholog) NW_004955441 10471555 10792881 - 102024283 AGCD01037089;AGCD01037090;AGCD01037091;AGCD01037092;AGCD01037093;AGCD01037094;GBDI01224141;XM_013517530 XP_013372984 MODEL 9012667 pseudo LOC102017544 L-lactate dehydrogenase A chain pseudogene NW_004955458 4711786 4713302 + 102017544 AGCD01047431 MODEL 616940649 snorna SNORA16A small nucleolar RNA, H/ACA box 16A 8825794 protein-coding Lgi4 leucine rich repeat LGI family member 4 INVOLVED IN adult locomotory behavior (ortholog); glial cell development (ortholog); glial cell proliferation (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita-1 (ortholog); childhood absence epilepsy (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN extracellular region (ortholog) NW_004955468 4441808 4456884 - 102012625 AGCD01051910;GBDF01017792;XM_013522439;XM_013522440;XR_001236912 XP_013377893;XP_013377894 MODEL 8876153 ncrna LOC102030297 uncharacterized LOC102030297 NW_004955470 2444858 2445353 + 102030297 AGCD01052678;GBDF01040282;XR_263458 MODEL 8916007 ncrna LOC102009480 uncharacterized LOC102009480 NW_004955412 20745073 20752832 + 102009480 AGCD01013012;AGCD01013013;GBDF01262373;XR_001232926;XR_260006 MODEL 9056345 ncrna LOC102011023 uncharacterized LOC102011023 NW_004955504 1257357 1259714 - 102011023 AGCD01064836;GBDF01264466;XR_264285 MODEL 8720600 pseudo LOC102018700 receptor-type tyrosine-protein phosphatase alpha pseudogene NW_004955411 21173967 21176388 - 102018700 AGCD01012069 MODEL 10310687 ncrna LOC106149904 uncharacterized LOC106149904 NW_004955456 13978348 13997437 + 106149904 AGCD01046629;AGCD01046630;GBDJ01210651;XR_001236373;XR_001236374 MODEL 8826631 protein-coding LOC102012663 adenylate kinase isoenzyme 1 NW_004955495 3193444 3209238 - 102012663 AGCD01061835;AGCD01061836;AGCD01061837;GBDF01307680;XM_005405718;XR_001231378;XR_264139;XR_264140;XR_264141 XP_005405775 MODEL 8979142 ncrna LOC102006863 uncharacterized LOC102006863 NW_004955452 9730790 9732267 + 102006863 AGCD01044258;GBDF01076687;XR_001236011;XR_001236012;XR_262671 MODEL 8961613 protein-coding Brcc3 BRCA1/BRCA2-containing complex subunit 3 ENCODES a protein that exhibits enzyme regulator activity (ortholog); K63-linked deubiquitinase activity (ortholog); metal-dependent deubiquitinase activity (ortholog); INVOLVED IN cellular response to ionizing radiation (ortholog); chromatin remodeling (ortholog); DNA repair-dependent chromatin remodeling (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); Occupational Diseases (ortholog); Pregnancy in Diabetics (ortholog); FOUND IN BRCA1-A complex (ortholog); BRISC complex (ortholog); cytoplasm (ortholog) NW_004955594 551407 613772 - 102024964 AGCD01076434;AGCD01076435;GBCB01038463;XM_013509990;XM_013509991 XP_013365444;XP_013365445 MODEL 8715832 pseudo LOC102028511 protein FAM134B pseudogene NW_004955464 7935764 7936955 + 102028511 AGCD01050073;XR_263225 MODEL 8825727 pseudo LOC102011411 60S ribosomal protein L18a pseudogene NW_004955459 4048909 4049495 + 102011411 AGCD01048022 MODEL 8837887 protein-coding Rhov ras homolog family member V FOUND IN endosome membrane (ortholog); plasma membrane (ortholog) NW_004955416 7741762 7743816 - 102029074 AGCD01017008;GBDI01297240;XM_005381268 XP_005381325 MODEL 8945846 protein-coding Elovl3 ELOVL fatty acid elongase 3 ENCODES a protein that exhibits fatty acid elongase activity (ortholog); INVOLVED IN fatty acid elongation, monounsaturated fatty acid (ortholog); fatty acid elongation, polyunsaturated fatty acid (ortholog); fatty acid elongation, saturated fatty acid (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955485 8141818 8144458 - 102020124 AGCD01058692;XM_005403852;XM_013504025 XP_005403909;XP_013359479 MODEL 8772156 protein-coding LOC102003680 uncharacterized LOC102003680 NW_004955513 4114603 4116964 + 102003680 AGCD01066920;GBDK01076605;XM_013506579 XP_013362033 MODEL 8758605 pseudo LOC102024369 mitochondrial import receptor subunit TOM20 homolog pseudogene NW_004955432 8593440 8593852 + 102024369 AGCD01030884 MODEL 8982386 protein-coding LOC102010274 cationic trypsin NW_004955494 1011732 1014914 - 102010274 AGCD01061390;XM_005405392 XP_005405449 MODEL 9056732 protein-coding Parp12 poly(ADP-ribose) polymerase family member 12 ENCODES a protein that exhibits NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); NAD+-protein-aspartate ADP-ribosyltransferase activity (ortholog); NAD+-protein-cysteine ADP-ribosyltransferase activity (ortholog); INVOLVED IN protein auto-ADP-ribosylation (ortholog); transepithelial transport (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Human Influenza (ortholog); macular degeneration (ortholog); FOUND IN trans-Golgi network (ortholog) NW_004955494 3126451 3158550 + 102023488 AGCD01061467;GBDF01000030;GBDJ01190436;XM_005405428 XP_005405485 MODEL 8821789 protein-coding LOC102006512 protein FAM170A-like NW_004955448 3085060 3094177 + 102006512 AGCD01041301;GBDK01265185;XM_005393037;XM_013518614 XP_005393094;XP_013374068 MODEL 8886352 protein-coding Serinc2 serine incorporator 2 ENCODES a protein that exhibits acetyltransferase activator activity (ortholog); phospholipid scramblase activity (ortholog); INVOLVED IN phosphatidylserine metabolic process (ortholog); plasma membrane phospholipid scrambling (ortholog); FOUND IN plasma membrane (ortholog) NW_004955452 9905152 9914943 + 102008911 AGCD01044263;GBBH01064457;GBDI01080614;XM_013519725 XP_013375179 MODEL 8934237 protein-coding LOC102019103 uncharacterized LOC102019103 NW_004955528 1074125 1078875 - 102019103 AGCD01069550;GBDF01306990;XM_005409996;XR_001231983 XP_005410053 MODEL 8865312 protein-coding Pou1f1 POU class 1 homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN adenohypophysis development (ortholog); B cell differentiation (ortholog); cell fate specification (ortholog); ASSOCIATED WITH combined or isolated pituitary hormone deficiency 1 (ortholog); combined pituitary hormone deficiency (ortholog); combined pituitary hormone deficiency 2 (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955407 5996016 6011483 + 102025654 AGCD01006940;GBDI01038943;XM_005375536 XP_005375593 MODEL 8919477 protein-coding Prorp protein only RNase P catalytic subunit ENCODES a protein that exhibits ribonuclease P activity (ortholog); INVOLVED IN mitochondrial tRNA 5'-end processing (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 54 (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog); mitochondrial ribonuclease P complex (ortholog) NW_004955409 25791209 25920651 - 102003843 AGCD01010138;AGCD01010139;AGCD01010140;AGCD01010141;GBCB01003766;XM_005376929;XM_005376930;XM_005376931 XP_005376986;XP_005376987;XP_005376988 MODEL 8939448 ncrna LOC102008377 uncharacterized LOC102008377 NW_004955406 39188080 39231357 + 102008377 AGCD01006621;AGCD01006622;AGCD01006623;GBBH01127399;XR_001236960;XR_001236961;XR_001236965;XR_259524 MODEL 8937414 pseudo LOC102005429 uncharacterized LOC102005429 NW_004955585 307477 456009 + 102005429 AGCD01075996;AGCD01075997 MODEL 8790965 pseudo LOC102028870 uncharacterized protein C11orf57 pseudogene NW_004955422 26235914 26236773 - 102028870 AGCD01023283 MODEL 9062428 protein-coding Vwce von Willebrand factor C and EGF domains ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Dwarfism (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955511 6235934 6251186 + 102018755 AGCD01066598;GBCQ01151731;XM_005408169 XP_005408226 MODEL 9027773 protein-coding Slc41a2 solute carrier family 41 member 2 ENCODES a protein that exhibits transmembrane transporter activity (ortholog); INVOLVED IN cobalt ion transport (ortholog); iron ion transport (ortholog); magnesium ion transport (ortholog); FOUND IN plasma membrane (ortholog) NW_004955405 39181396 39280789 - 102014318 AGCD01005496;AGCD01005497;AGCD01005498;GBDF01082692;XM_005374599;XM_005374600;XM_005374601;XM_005374602;XM_005374603;XM_013518965 XP_005374656;XP_005374657;XP_005374658;XP_005374659;XP_005374660;XP_013374419 MODEL 9057942 ncrna LOC102010654 uncharacterized LOC102010654 NW_004955451 2820724 2842826 + 102010654 AGCD01043023;GBDF01304074;XR_262571 MODEL 8943116 protein-coding LOC102027175 uncharacterized LOC102027175 NW_004955474 299527 301870 + 102027175 AGCD01054213;GBBH01141050;XM_005401456;XM_013502792 XP_005401513;XP_013358246 MODEL 8829949 protein-coding Tomm34 translocase of outer mitochondrial membrane 34 ENCODES a protein that exhibits heat shock protein binding (ortholog); INVOLVED IN protein import into mitochondrial matrix (ortholog); FOUND IN cytosol (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955445 12401348 12420548 + 102013770 AGCD01039751;GBBH01164511;XM_005392455 XP_005392512 MODEL 8947444 pseudo LOC102011024 cyclin-G1-like NW_004955505 3590543 3591876 + 102011024 AGCD01065032 MODEL 8894385 protein-coding Rab5a RAB5A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GDP-dissociation inhibitor binding (ortholog); INVOLVED IN amyloid-beta clearance by transcytosis (ortholog); canonical Wnt signaling pathway (ortholog); early endosome to late endosome transport (ortholog); PARTICIPATES IN autophagy pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH Myocardial Ischemia (ortholog); FOUND IN actin cytoskeleton (ortholog); axon (ortholog); axon terminus (ortholog) NW_004955430 11991548 12040003 + 102004840 AGCD01029472;AGCD01029473;GBDF01119494;XM_005387462;XM_013515692 XP_005387519;XP_013371146 MODEL 8963996 pseudo LOC102006864 protein phosphatase 1 regulatory subunit 21 pseudogene NW_004955405 13078719 13081046 + 102006864 AGCD01004872 MODEL 8720262 pseudo LOC102025786 uncharacterized protein C12orf45 pseudogene NW_004955475 6151506 6152080 - 102025786 AGCD01054952 MODEL 8788996 protein-coding Sln sarcolipin INVOLVED IN negative regulation of ATPase-coupled calcium transmembrane transporter activity (ortholog); positive regulation of cold-induced thermogenesis (ortholog); regulation of ATPase-coupled calcium transmembrane transporter activity (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); sarcoplasmic reticulum (ortholog); sarcoplasmic reticulum membrane (ortholog) NW_004955412 10057481 10062178 - 102003220 AGCD01012756;GBDK01231463;XM_005378031;XM_005378032 XP_005378088;XP_005378089 MODEL 8774683 ncrna LOC102021630 uncharacterized LOC102021630 NW_004955456 15990135 16004134 + 102021630 AGCD01046681;GBDF01030945;XR_001236355 MODEL 10078125 ncrna LOC106147064 uncharacterized LOC106147064 NW_004955514 5615595 5618348 + 106147064 AGCD01067157;GBCQ01120175;XR_001231776;XR_001231777;XR_001231778 MODEL 9000017 protein-coding Reep4 receptor accessory protein 4 INVOLVED IN mitotic nuclear membrane reassembly (ortholog); nuclear envelope organization (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955403 45627750 45631481 - 102003719 AGCD01002824;GBBH01051322;XM_005373648;XM_013513770 XP_005373705;XP_013369224 MODEL 8764937 protein-coding Pla2g7 phospholipase A2 group VII ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); A2-type glycerophospholipase activity (ortholog); phospholipid binding (ortholog); INVOLVED IN lipid oxidation (ortholog); low-density lipoprotein particle remodeling (ortholog); phosphatidylcholine catabolic process (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acute Coronary Syndrome (ortholog); asthma (ortholog); FOUND IN extracellular region (ortholog); high-density lipoprotein particle (ortholog); low-density lipoprotein particle (ortholog) NW_004955437 11534251 11577942 - 102008258 AGCD01034575;AGCD01034576;AGCD01034577;AGCD01034578;GBDJ01386258;XM_005389864;XM_005389865;XM_013517097;XM_013517098;XM_013517099 XP_005389921;XP_005389922;XP_013372551;XP_013372552;XP_013372553 MODEL 8718863 ncrna LOC102023358 uncharacterized LOC102023358 NW_004955481 7044388 7067422 - 102023358 AGCD01057048;AGCD01057049;AGCD01057050;AGCD01057051;GBBH01013120;XR_263788 MODEL 8946950 protein-coding Psmc6 proteasome 26S subunit, ATPase 6 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of inclusion body assembly (ortholog); regulation of AMPA receptor activity (ortholog); FOUND IN cytosolic proteasome complex (ortholog); inclusion body (ortholog); nucleus (ortholog) NW_004955409 10454210 10474872 - 102009582 AGCD01009472;GBDJ01190316;XM_005376779 XP_005376836 MODEL 8854048 protein-coding Rab5b RAB5B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP-dependent protein binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); endocytosis (ortholog); endosomal transport (ortholog); ASSOCIATED WITH Pulmonary Surfactant Metabolism Dysfunction 1 (ortholog); FOUND IN early endosome membrane (ortholog); endocytic vesicle (ortholog); endosome (ortholog) NW_004955458 3563363 3582620 + 102026402 AGCD01047320;AGCD01047321;AGCD01047322;AGCD01047323;AGCD01047324;GBCB01000783;GBDF01126202;XM_013520906 XP_013376360 MODEL 8776199 protein-coding Rtf1 RTF1 homolog, Paf1/RNA polymerase II complex component ENCODES a protein that exhibits single-stranded DNA binding (ortholog); INVOLVED IN blastocyst growth (ortholog); chromatin organization (ortholog); endodermal cell fate commitment (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN Cdc73/Paf1 complex (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955416 8237439 8293802 + 102007761 AGCD01017038;AGCD01017039;AGCD01017040;GBDF01090358;XM_005381285;XM_013512486 XP_005381342;XP_013367940 MODEL 10319769 ncrna LOC106148156 uncharacterized LOC106148156 NW_004955416 28178495 28179617 + 106148156 AGCD01017626;GBDI01034434;XR_001233337 MODEL 10178266 ncrna LOC106149905 uncharacterized LOC106149905 NW_004955457 7725658 7747335 - 106149905 AGCD01046885;AGCD01046886;GBDK01094097;XR_001236376 MODEL 9064179 protein-coding Pts 6-pyruvoyltetrahydropterin synthase ENCODES a protein that exhibits 6-pyruvoyltetrahydropterin synthase activity (ortholog); identical protein binding (ortholog); INVOLVED IN tetrahydrobiopterin biosynthetic process (ortholog); tetrahydrobiopterin metabolic process (ortholog); PARTICIPATES IN dopa responsive dystonia pathway; Segawa syndrome pathway; ASSOCIATED WITH BH4-deficient hyperphenylalaninemia A (ortholog); BH4-deficient hyperphenylalaninemia B (ortholog); disease of metabolism (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955412 13880937 13888562 + 102030166 AGCD01012846;AGCD01012847;GBDJ01399101;XM_005378120 XP_005378177 MODEL 39133363 snorna SNORD99 small nucleolar RNA, C/D box 99 8761460 protein-coding Ppp3cb protein phosphatase 3 catalytic subunit beta ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein serine/threonine phosphatase activity (ortholog); calmodulin binding (ortholog); INVOLVED IN calcineurin-mediated signaling (ortholog); calcineurin-NFAT signaling cascade (ortholog); calcium-ion regulated exocytosis (ortholog); PARTICIPATES IN calcineurin signaling pathway; dopamine signaling pathway; interleukin-12 signaling pathway; ASSOCIATED WITH aortic valve stenosis (ortholog); focal segmental glomerulosclerosis (ortholog); Left Ventricular Hypertrophy (ortholog); FOUND IN calcineurin complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955437 18323852 18377815 + 102016849 AGCD01034789;AGCD01034790;GBCB01006009;XM_005389972;XM_005389973;XM_005389974;XM_005389975;XM_005389976;XM_005389977;XM_013516758;XM_013516760;XM_013516761 XP_005390029;XP_005390030;XP_005390031;XP_005390032;XP_005390033;XP_005390034;XP_013372212;XP_013372214;XP_013372215 MODEL 8904313 protein-coding LOC102027848 olfactory receptor 1D2 NW_004955481 270064 271476 + 102027848 AGCD01056784;GBDJ01054583;XM_013503529 XP_013358983 MODEL 126903052 snorna SNORA18 small nucleolar RNA, H/ACA box 18 8989724 protein-coding LOC102026164 zinc finger protein 83-like NW_004955558 143977 162063 - 102026164 AGCD01073345;GBCB01027560;XM_013508864;XM_013508865 XP_013364318;XP_013364319 MODEL 8953768 pseudo LOC102017545 neurofilament heavy polypeptide pseudogene NW_004955408 5855363 5857838 + 102017545 AGCD01008158 MODEL 8737534 pseudo LOC102009482 growth hormone-inducible transmembrane protein pseudogene NW_004955466 13355054 13356148 - 102009482 AGCD01051156 MODEL 9050991 pseudo LOC102006513 nucleolar protein 56-like NW_004955448 11571175 11572111 + 102006513 AGCD01041528 MODEL 8773914 protein-coding LOC102010275 fer-1-like protein 4 NW_004955422 25848531 25882747 + 102010275 AGCD01023269;GBCQ01116103;XM_013514202 XP_013369656 MODEL 8816594 protein-coding Rasgrp4 RAS guanyl releasing protein 4 ENCODES a protein that exhibits diacylglycerol binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN antibacterial innate immune response (ortholog); phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); positive regulation of natural killer cell mediated immunity (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog) NW_004955468 1007082 1020744 + 102013157 AGCD01051748;GBDK01016923;XM_005399844;XM_013522410;XM_013522411;XM_013522412 XP_005399901;XP_013377864;XP_013377865;XP_013377866 MODEL 8957417 protein-coding Serinc3 serine incorporator 3 ENCODES a protein that exhibits molecular carrier activity (ortholog); phospholipid scramblase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); plasma membrane phospholipid scrambling (ortholog); positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955445 12837616 12868631 + 102018346 AGCD01039763;AGCD01039764;GBDF01003618;XM_005392472 XP_005392529 MODEL 8720813 protein-coding Pros1 protein S ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN liver development (ortholog); negative regulation of coagulation (ortholog); positive regulation of phagocytosis (ortholog); PARTICIPATES IN protein C anticoagulant pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); autosomal dominant thrombophilia due to protein S deficiency (ortholog); autosomal recessive thrombophilia due to protein S deficiency (ortholog); FOUND IN extracellular region (ortholog); protein-containing complex (ortholog) NW_004955407 3514900 3566165 + 102002997 AGCD01006863;GBCQ01040731;GBDF01157496;XM_013503591 XP_013359045 MODEL 8935516 protein-coding LOC102028871 zinc finger protein 709-like NW_004955495 2451976 2461016 - 102028871 AGCD01061776;GBCE01185389;XM_005405680 XP_005405737 MODEL 8786433 protein-coding LOC102012664 guanylate-binding protein 5 NW_004955423 5021524 5040124 + 102012664 AGCD01023551;AGCD01023552;AGCD01023553;GBDK01006467;XM_005385100 XP_005385157 MODEL 8970058 protein-coding LOC102008379 zinc finger protein 454 NW_004955408 1440967 1461815 - 102008379 AGCD01007959;GBBH01113383;XM_013507982;XM_013507985 XP_013363436;XP_013363439 MODEL 8969860 ncrna LOC102028512 uncharacterized LOC102028512 NW_004955412 548742 553178 + 102028512 AGCD01012490;GBDF01114522;XR_259957 MODEL 8844099 protein-coding Pou2af1 POU class 2 homeobox associating factor 1 ENCODES a protein that exhibits DNA binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN cellular response to virus (ortholog); germinal center B cell differentiation (ortholog); positive regulation of interleukin-6 production (ortholog); FOUND IN RNA polymerase II transcription regulator complex (ortholog) NW_004955412 13131229 13167150 - 102016035 AGCD01012829;GBDI01222451;XM_005378068;XM_005378069;XM_005378070;XM_005378071;XM_005378072;XM_013511006;XM_013511007 XP_005378125;XP_005378126;XP_005378127;XP_005378128;XP_005378129;XP_013366460;XP_013366461 MODEL 8937658 protein-coding LOC102015637 dipeptidase 2 NW_004955484 8715037 8729483 + 102015637 AGCD01058394;AGCD01058395;GBDF01235917;XM_005403597;XM_005403598;XM_005403599;XM_005403600;XM_005403601;XM_013503879;XM_013503880;XM_013503881 XP_005403654;XP_005403655;XP_005403656;XP_005403657;XP_005403658;XP_013359333;XP_013359334;XP_013359335 MODEL 9061053 protein-coding Scyl2 SCY1 like pseudokinase 2 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN brain development (ortholog); clathrin-dependent endocytosis (ortholog); endosome to lysosome transport (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita-4 (ortholog); genetic disease (ortholog); FOUND IN endosome membrane (ortholog) NW_004955405 35984667 36043581 + 102020749 AGCD01005407;AGCD01005408;GBDF01119404;XM_005374529;XM_005374530 XP_005374586;XP_005374587 MODEL 8978721 protein-coding Brd1 bromodomain containing 1 ENCODES a protein that exhibits histone H3K14 acetyltransferase activity (ortholog); histone H4K12 acetyltransferase activity (ortholog); histone H4K5 acetyltransferase activity (ortholog); INVOLVED IN positive regulation of erythrocyte differentiation (ortholog); response to electrical stimulus (ortholog); response to immobilization stress (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); bipolar disorder (ortholog); Experimental Seizures (ortholog); FOUND IN chromosome (ortholog); dendrite (ortholog); histone H3-K14 acetyltransferase complex (ortholog) NW_004955413 32935827 32973820 - 102016580 AGCD01014652;GBDK01189055;XM_005379525;XM_005379526;XM_013511532 XP_005379582;XP_005379583;XP_013366986 MODEL 8716338 protein-coding Slc41a3 solute carrier family 41 member 3 ENCODES a protein that exhibits magnesium:sodium antiporter activity (ortholog); INVOLVED IN mitochondrial magnesium ion transmembrane transport (ortholog); FOUND IN mitochondrial inner membrane (ortholog); plasma membrane (ortholog) NW_004955421 21349484 21407171 - 102017779 AGCD01022107;AGCD01022108;GBCQ01151305;XM_005383826;XM_005383827;XM_005383828;XM_005383829;XM_013513732 XP_005383883;XP_005383884;XP_005383885;XP_005383886;XP_013369186 MODEL 8832307 pseudo LOC102011028 40S ribosomal protein S8 pseudogene NW_004955510 5851568 5852288 - 102011028 AGCD01066294 MODEL 8757182 pseudo LOC102027176 DCN1-like protein 1 pseudogene NW_004955475 10519833 10520596 + 102027176 AGCD01055099 MODEL 8734670 pseudo LOC102025787 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955416 1571910 1572920 - 102025787 AGCD01016838;XR_260347 MODEL 8708382 protein-coding Thap1 THAP domain containing 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN DNA-templated transcription (ortholog); endothelial cell proliferation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH dystonia (ortholog); genetic disease (ortholog); Multiple mitochondrial dysfunctions syndrome 9B (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955457 13077015 13088406 - 102011739 AGCD01047037;GBCB01074927;XM_005397068;XM_013520673;XR_001236385;XR_001236386;XR_001236387;XR_001236388;XR_001236389;XR_001236390;XR_001236391;XR_001236392 XP_005397125;XP_013376127 MODEL 8764079 protein-coding Tomm40 translocase of outer mitochondrial membrane 40 ENCODES a protein that exhibits monoatomic cation channel activity (ortholog); preprotein binding (ortholog); transmembrane protein transporter activity (ortholog); INVOLVED IN positive regulation of apoptotic process (ortholog); protein import into mitochondrial matrix (ortholog); protein insertion into mitochondrial membrane (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; intermembrane space assembly pathway of mitochondrial protein import; ASSOCIATED WITH Alzheimer's disease (ortholog); Animal Disease Models (ortholog); cerebral infarction (ortholog); FOUND IN membrane (ortholog); mitochondria-associated endoplasmic reticulum membrane contact site (ortholog); mitochondrial inner membrane (ortholog) NW_004955555 1987063 1997329 + 102028023 AGCD01073118;AGCD01073119;AGCD01073120;GBBH01087837;GBCE01039145;XM_013508699 XP_013364153 MODEL 9059874 protein-coding LOC102030309 olfactory receptor 3A2-like NW_004955481 122938 128422 - 102030309 AGCD01056781;XM_005402912 XP_005402969 MODEL 8855658 ncrna LOC102019105 uncharacterized LOC102019105 NW_004955436 21653886 21682147 + 102019105 AGCD01034066;AGCD01034067;AGCD01034068;GBDF01020993;XR_001234982;XR_001234983;XR_001234984 MODEL 8802541 protein-coding Lgmn legumain ENCODES a protein that exhibits cysteine-type endopeptidase activity (ortholog); endopeptidase activator activity (ortholog); peptidase activity (ortholog); INVOLVED IN antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); associative learning (ortholog); cellular response to amyloid-beta (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); High Myopia (ortholog); lymphatic system disease (ortholog); FOUND IN apical part of cell (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955438 14905856 14938722 - 102027677 AGCD01035355;AGCD01035356;GBBH01061269;XM_005390332 XP_005390389 MODEL 8712326 protein-coding Psmd1 proteasome 26S subunit, non-ATPase 1 ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN regulation of AMPA receptor activity (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog); synaptic vesicle (ortholog) NW_004955453 4314177 4397972 - 102024421 AGCD01044686;AGCD01044687;GBCQ01003438;GBDI01005709;XM_013519960 XP_013375414 MODEL 39133521 snorna U3 Small nucleolar RNA U3 8883480 protein-coding Trib1 tribbles pseudokinase 1 ENCODES a protein that exhibits mitogen-activated protein kinase kinase binding (ortholog); protein kinase binding (ortholog); protein kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of JNK cascade (ortholog); negative regulation of lipopolysaccharide-mediated signaling pathway (ortholog); negative regulation of MAPK cascade (ortholog); ASSOCIATED WITH coronary artery disease (ortholog); Hypertriglyceridemia (ortholog); metabolic dysfunction-associated steatotic liver disease (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955461 494003 501928 + 102030050 AGCD01048795;GBDF01159528;XM_005397987 XP_005398044 MODEL 8780625 protein-coding LOC102005435 beta-defensin 33-like NW_004955403 53686697 53694266 + 102005435 AGCD01003067;AGCD01003068;AGCD01003069;GBDK01170251;XM_005373836 XP_005373893 MODEL 8749502 protein-coding Vwde von Willebrand factor D and EGF domains ASSOCIATED WITH optic atrophy 12 (ortholog) NW_004955432 18687192 18752679 - 102003368 AGCD01031157;AGCD01031158;AGCD01031159;XM_005388152 XP_005388209 MODEL 9029789 protein-coding Rhoxf1 Rhox homeobox family member 1 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN androgen receptor signaling pathway (ortholog); positive regulation of gene expression (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955534 39060 39570 + 102005840 AGCD01070432;XM_005410424 XP_005410481 MODEL 8701061 protein-coding LOC102011427 chromosome unknown open reading frame, human C19orf12 INVOLVED IN apoptotic process (ortholog); autophagy (ortholog); lipid metabolic process (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); lipid droplet (ortholog) NW_004955468 7903438 7914038 + 102011427 AGCD01052015;AGCD01052016;GBCB01022853;XM_005400110 XP_005400167 MODEL 10116195 protein-coding LOC106148157 uncharacterized LOC106148157 NW_004955416 30103921 30117216 - 106148157 AGCD01017679;XM_013512595 XP_013368049 MODEL 8769583 protein-coding Rtf2 replication termination factor 2 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN cellular response to hydroxyurea (ortholog); regulation of DNA stability (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955445 2729658 2764447 - 102009331 AGCD01039364;GBDF01005514;XM_005392267 XP_005392324 MODEL 39133596 snorna snoZ196 Small nucleolar RNA Z196/R39/R59 family 10265739 protein-coding Rab5c RAB5C, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTPase activity (ortholog); INVOLVED IN endocytosis (ortholog); endosomal transport (ortholog); endosome organization (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 41 (ortholog); genetic disease (ortholog); FOUND IN endocytic vesicle (ortholog); endosome (ortholog); exocytic vesicle (ortholog) NW_004955451 16200442 16215583 - 106146228 AGCD01043660;GBCQ01075012;XM_005394449 XP_005394506 MODEL 8708720 pseudo LOC102021634 granzyme B(G,H)-like NW_004955409 35533853 35535909 + 102021634 AGCD01010425 MODEL 10356932 pseudo LOC106147065 calcium-binding mitochondrial carrier protein Aralar1 pseudogene NW_004955408 32718391 32718634 - 106147065 AGCD01008852 MODEL 9056695 protein-coding Slamf1 signaling lymphocytic activation molecule family member 1 ENCODES a protein that exhibits identical protein binding (ortholog); SH2 domain binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN leukocyte chemotaxis involved in inflammatory response (ortholog); myeloid dendritic cell activation involved in immune response (ortholog); natural killer cell differentiation (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); phagocytic vesicle (ortholog) NW_004955468 12336744 12383917 - 102019586 AGCD01052149;AGCD01052150;AGCD01052151;GBDK01308588;XM_005400212;XM_013522533;XM_013522535 XP_005400269;XP_013377987;XP_013377989 MODEL 8765068 pseudo LOC102015639 protein arginine N-methyltransferase 3 pseudogene NW_004955487 2902814 2904330 - 102015639 AGCD01059272 MODEL 8730210 protein-coding Sltm SAFB like transcription modulator ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog) NW_004955450 15691472 15748123 + 102013894 AGCD01042809;AGCD01042810;AGCD01042811;AGCD01042812;AGCD01042813;GBCB01022390;GBCE01053462;XM_013518874 XP_013374328 MODEL 8860404 protein-coding Reep5 receptor accessory protein 5 INVOLVED IN endoplasmic reticulum membrane organization (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum tubular network (ortholog) NW_004955418 2504028 2539574 + 102024676 AGCD01018771;AGCD01018772;GBDJ01073123;GBDK01008237;XM_005382341 XP_005382398 MODEL 8992637 pseudo LOC102018702 U2 small nuclear ribonucleoprotein B'' pseudogene NW_004955465 10212506 10213202 - 102018702 AGCD01050503 MODEL 9019159 ncrna LOC102027849 uncharacterized LOC102027849 NW_004955417 21592577 21606875 - 102027849 AGCD01018401;GBDF01124458;XR_001233411;XR_260487 MODEL 8720711 pseudo LOC102026166 T-complex protein 1 subunit alpha-like NW_004955443 18350075 18354651 + 102026166 AGCD01038597 MODEL 8923705 protein-coding Pla2r1 phospholipase A2 receptor 1 ENCODES a protein that exhibits phospholipase binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN oxidative stress-induced premature senescence (ortholog); positive regulation of arachidonate secretion (ortholog); positive regulation of cytokine production (ortholog); ASSOCIATED WITH atypical hemolytic-uremic syndrome (ortholog); autistic disorder (ortholog); kidney disease (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog); signaling receptor complex (ortholog) NW_004955449 13542458 13653907 + 102028146 AGCD01042138;AGCD01042139;GBCE01188445;XM_005393355 XP_005393412 MODEL 8901449 protein-coding Parp14 poly(ADP-ribose) polymerase family member 14 ENCODES a protein that exhibits enzyme binding (ortholog); NAD+ binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); INVOLVED IN NAD+ catabolic process (ortholog); negative regulation of gene expression (ortholog); negative regulation of type II interferon-mediated signaling pathway (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; interleukin-4 signaling pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955427 21878980 21929097 + 102012562 AGCD01027461;GBDI01230166;XM_005386519;XM_013515129 XP_005386576;XP_013370583 MODEL 8847982 protein-coding Pde11a phosphodiesterase 11A ENCODES a protein that exhibits 3',5'-cGMP-stimulated cyclic-nucleotide phosphodiesterase activity (ortholog); 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); INVOLVED IN negative regulation of cAMP/PKA signal transduction (ortholog); negative regulation of receptor guanylyl cyclase signaling pathway (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Bardet-Biedl syndrome 16 (ortholog); primary pigmented nodular adrenocortical disease 2 (ortholog); schizophrenia (ortholog); FOUND IN cytosol (ortholog); perikaryon (ortholog) NW_004955403 18804789 19180612 + 102004877 AGCD01002114;AGCD01002115;AGCD01002116;AGCD01002117;AGCD01002118;AGCD01002119;GBDF01055985;XM_005373398 XP_005373455 MODEL 8798750 ncrna LOC102017548 uncharacterized LOC102017548 NW_004955409 22184677 22188277 - 102017548 AGCD01010027;AGCD01010028;AGCD01010029;GBDF01068620;XR_259786 MODEL 9063767 protein-coding LOC102010656 laminin subunit alpha-3-like NW_004955649 79435 83763 - 102010656 AGCD01077784;AGCD01077785;GBDI01289779;GBDJ01229315;XM_013510173 XP_013365627 MODEL 8970769 protein-coding Serinc4 serine incorporator 4 NW_004955416 10255269 10257996 - 102008411 AGCD01017126;GBDF01198361;XM_013512418 XP_013367872 MODEL 9005236 ncrna LOC102003682 uncharacterized LOC102003682 NW_004955432 17288234 17299687 - 102003682 AGCD01031120;GBDF01039986;XR_001234642;XR_261531 MODEL 8943102 ncrna LOC102024370 uncharacterized LOC102024370 NW_004955514 4624748 4630551 + 102024370 AGCD01067139;GBDF01039693;XR_264512 MODEL 9001773 protein-coding Proser1 proline and serine rich 1 NW_004955431 7288594 7314393 + 102018756 AGCD01030083;AGCD01030084;GBBH01192909;GBDF01277260;XM_005387643 XP_005387700 MODEL 8813441 ncrna LOC102008387 uncharacterized LOC102008387 NW_004955410 24882847 24896816 + 102008387 AGCD01011136;GBDK01431851;XR_001232709 MODEL 8957701 protein-coding Pttg1 PTTG1 regulator of sister chromatid separation, securin ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (ortholog); heat shock protein binding (ortholog); molecular function activator activity (ortholog); INVOLVED IN chromosome segregation (ortholog); homologous chromosome segregation (ortholog); mitotic sister chromatid cohesion (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Pituitary Neoplasms (ortholog); psoriasis (ortholog); FOUND IN axoneme (ortholog); cilium (ortholog); cytoplasm (ortholog) NW_004955408 14293704 14301357 + 102027493 AGCD01008391;GBDF01007519;XM_005376266;XM_005376267 XP_005376323;XP_005376324 MODEL 9052608 protein-coding Lgr4 leucine rich repeat containing G protein-coupled receptor 4 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN bone mineralization (ortholog); bone remodeling (ortholog); circadian regulation of gene expression (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH glaucoma (ortholog); Self-Limited Delayed Puberty (ortholog); FOUND IN plasma membrane (ortholog) NW_004955476 6611102 6629294 - 102008406 AGCD01055337;GBBH01165625;GBCB01059985;XM_013502964 XP_013358418 MODEL 8825996 protein-coding Elovl4 ELOVL fatty acid elongase 4 ENCODES a protein that exhibits fatty acid elongase activity (ortholog); INVOLVED IN circadian rhythm (ortholog); fatty acid elongation, polyunsaturated fatty acid (ortholog); fatty acid elongation, saturated fatty acid (ortholog); PARTICIPATES IN alpha-linolenic acid metabolic pathway; linoleic acid metabolic pathway; ASSOCIATED WITH corneal dystrophy (ortholog); diabetic retinopathy (ortholog); fundus dystrophy (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955502 7764451 7774503 - 102016495 AGCD01064461;GBCC01001147;XM_013505842 XP_013361296 MODEL 8918641 pseudo LOC102023359 elongation factor 1-alpha 1-like NW_004955481 10327329 10331933 - 102023359 AGCD01057142 MODEL 8724809 protein-coding Pou2af2 POU class 2 homeobox associating factor 2 ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); transcription coactivator activity (ortholog); FOUND IN nucleus (ortholog) NW_004955412 13076854 13079095 + 102015300 AGCD01012827;AGCD01012828;GBCE01163326;XM_013511187 XP_013366641 MODEL 10201646 ncrna LOC106148158 uncharacterized LOC106148158 NW_004955416 30134339 30141928 - 106148158 AGCD01017679;GBDI01113373;XR_001233338 MODEL 8900608 pseudo LOC102030311 coiled-coil domain-containing protein 152-like NW_004955418 20574475 20575317 - 102030311 AGCD01019237 MODEL 8913666 protein-coding Thap11 THAP domain containing 11 ENCODES a protein that exhibits core promoter sequence-specific DNA binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cell population proliferation (ortholog); electron transport chain (ortholog); gene expression (ortholog); ASSOCIATED WITH methylmalonic aciduria and homocystinuria type cblC (ortholog); Methylmalonic Aciduria and Homocystinuria, cblL Type (ortholog); Spinocerebellar Ataxia 51 (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955484 8857015 8859091 - 102022193 AGCD01058398;GBCQ01010799;XM_005403621 XP_005403678 MODEL 8841646 protein-coding Rab5if RAB5 interacting factor INVOLVED IN mitochondrial respirasome assembly (ortholog); multi-pass transmembrane protein insertion into ER membrane (ortholog); ASSOCIATED WITH craniofacial dysmorphism, skeletal anomalies, and impaired intellectual development syndrome 2 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955422 25003195 25017380 - 102022094 AGCD01023239;AGCD01023240;GBDK01078344;XM_005384737 XP_005384794 MODEL 8975347 ncrna LOC102006516 uncharacterized LOC102006516 NW_004955450 641987 645584 + 102006516 AGCD01042340;GBCE01092145;XR_001235864;XR_262511 MODEL 8815042 protein-coding LOC102010276 uncharacterized LOC102010276 NW_004955494 4605410 4658564 - 102010276 AGCD01061508;AGCD01061509;XM_013504923 XP_013360377 MODEL 8857593 ncrna LOC102012665 uncharacterized LOC102012665 NW_004955425 2406340 2448278 - 102012665 AGCD01025262;AGCD01025263;GBDF01006731;XR_261120 MODEL 8860696 protein-coding Ppp3cc protein phosphatase 3 catalytic subunit gamma ENCODES a protein that exhibits calcium-dependent protein serine/threonine phosphatase activity (ortholog); calmodulin-dependent protein phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN calcineurin-NFAT signaling cascade (ortholog); penetration of zona pellucida (ortholog); positive regulation of synaptic vesicle endocytosis (ortholog); PARTICIPATES IN calcineurin signaling pathway; dopamine signaling pathway; ASSOCIATED WITH Genetic Predisposition to Disease (ortholog); keratoconus (ortholog); schizophrenia (ortholog); FOUND IN calcineurin complex (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955403 45915985 45969350 + 102008283 AGCD01002843;AGCD01002844;AGCD01002845;GBDJ01189557;GBDK01398281;XM_005373663 XP_005373720 MODEL 9058565 protein-coding Trib2 tribbles pseudokinase 2 ENCODES a protein that exhibits nucleotide binding (ortholog); protein kinase activity (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN negative regulation of fat cell differentiation (ortholog); negative regulation of interleukin-10 production (ortholog); positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog) NW_004955487 6889571 6915068 + 102008735 AGCD01059386;GBCE01170233;XM_005404436;XM_013504382;XM_013504383 XP_005404493;XP_013359836;XP_013359837 MODEL 8802129 pseudo LOC102012667 translationally-controlled tumor protein pseudogene NW_004955502 3634252 3634801 + 102012667 AGCD01064317 MODEL 8795536 protein-coding LOC102011029 chromosome unknown open reading frame, human C10orf67 ASSOCIATED WITH pancreatic agenesis 2 (ortholog) NW_004955429 5674076 5798289 + 102011029 AGCD01028531;AGCD01028532;AGCD01028533;AGCD01028534;AGCD01028535;AGCD01028536;GBDF01127753;XM_013515364 XP_013370818 MODEL 8999277 protein-coding Rhpn1 rhophilin Rho GTPase binding protein 1 INVOLVED IN focal adhesion assembly (ortholog); glomerular filtration (ortholog); kidney development (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN cell periphery (ortholog); plasma membrane (ortholog) NW_004955454 2086054 2099018 + 102029823 AGCD01045009;GBDF01155289;XM_005395768 XP_005395825 MODEL 8961738 protein-coding Brd10 bromodomain containing 10 NW_004955434 9904255 9991651 - 102005499 AGCD01032314;AGCD01032315;AGCD01032316;GBCQ01124872;GBDJ01028811;XM_013516351 XP_013371805 MODEL 10235809 ncrna LOC106147066 uncharacterized LOC106147066 NW_004955514 5324731 5327152 + 106147066 AGCD01067151;GBDF01056348;XR_001231779 MODEL 8951122 protein-coding LOC102025790 GTP-binding nuclear protein Ran-like NW_004955480 421215 422185 + 102025790 AGCD01056581;XM_005402460 XP_005402517 MODEL 10134922 pseudo LOC106149906 tetratricopeptide repeat protein 19, mitochondrial-like NW_004955457 12061294 12065929 + 106149906 AGCD01046998 MODEL 8816454 ncrna LOC102006867 uncharacterized LOC102006867 NW_004955452 14398434 14403748 + 102006867 AGCD01044466;GBDF01039609;XR_001236058;XR_262689 MODEL 8781130 pseudo LOC102028520 transcription elongation factor B polypeptide 1 pseudogene NW_004955467 13074169 13074454 + 102028520 AGCD01051666 MODEL 8736183 ncrna LOC102028872 uncharacterized LOC102028872 NW_004955495 3905711 3913792 + 102028872 AGCD01061887;GBDF01222743;XR_264147;XR_264148 MODEL 39133678 snorna U3 Small nucleolar RNA U3 8878145 protein-coding LOC102017549 uncharacterized LOC102017549 NW_004955409 35685901 35755271 + 102017549 AGCD01010428;AGCD01010429;AGCD01010430;AGCD01010431;AGCD01010432;GBBH01115785;XM_013510221 XP_013365675 MODEL 8759701 protein-coding Parp16 poly(ADP-ribose) polymerase family member 16 ENCODES a protein that exhibits kinase binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); endoplasmic reticulum unfolded protein response (ortholog); IRE1-mediated unfolded protein response (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum tubular network (ortholog) NW_004955450 10157731 10177939 + 102008047 AGCD01042608;GBDI01292025;GBDK01358905;XM_013519015 XP_013374469 MODEL 8852667 protein-coding Vwf von Willebrand factor ENCODES a protein that exhibits collagen binding (ortholog); identical protein binding (ortholog); immunoglobulin binding (ortholog); INVOLVED IN activation of blood coagulation via clotting cascade (ortholog); blood coagulation (ortholog); cell adhesion (ortholog); PARTICIPATES IN platelet aggregation pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); alcohol dependence (ortholog); alcohol use disorder (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); external side of plasma membrane (ortholog) NW_004955413 3672470 3825588 - 102010886 AGCD01013578;AGCD01013579;AGCD01013580;AGCD01013581;AGCD01013582;AGCD01013583;AJ238385;GBDK01001413;XM_005378754;XM_005378755 CAB86185;XP_005378811;XP_005378812 MODEL 8768659 protein-coding Thap12 THAP domain containing 12 FOUND IN nucleus (ortholog) NW_004955414 15539135 15560664 + 102019794 AGCD01015186;AGCD01015187;GBCB01039699;GBDK01238164;XM_005379872 XP_005379929 MODEL 8842401 ncrna LOC102009483 uncharacterized LOC102009483 NW_004955412 27560591 27578228 + 102009483 AGCD01013240;AGCD01013241;GBDK01345407;XR_260029 MODEL 8936991 protein-coding Snph syntaphilin INVOLVED IN neuron differentiation (ortholog); PARTICIPATES IN mitochondria transport pathway; FOUND IN cytoplasm (ortholog); cytoplasmic microtubule (ortholog); mitochondrial membrane (ortholog) NW_004955596 489174 531226 + 102013129 AGCD01076519;AGCD01076520;AGCD01076521;GBDF01288084;XM_005414698;XM_005414699;XM_013510013;XM_013510015;XM_013510016;XM_013510017;XM_013510018 XP_005414755;XP_005414756;XP_013365467;XP_013365469;XP_013365470;XP_013365471;XP_013365472 MODEL 8794313 ncrna LOC102021635 uncharacterized LOC102021635 NW_004955462 9120697 9137546 + 102021635 AGCD01049332;GBDF01013525;XR_263109 MODEL 9063251 pseudo LOC102019109 mortality factor 4-like protein 1 pseudogene NW_004955439 2501307 2503035 - 102019109 AGCD01035651 MODEL 10107292 ncrna LOC106148159 uncharacterized LOC106148159 NW_004955403 18001403 18030804 - 106148159 AGCD01002093;GBDK01334631;XR_001233340 MODEL 9019517 protein-coding Rasip1 Ras interacting protein 1 ENCODES a protein that exhibits GTPase binding (ortholog); protein homodimerization activity (ortholog); protein serine/threonine kinase inhibitor activity (ortholog); INVOLVED IN angiogenesis (ortholog); branching morphogenesis of an epithelial tube (ortholog); negative regulation of autophagy (ortholog); FOUND IN cell-cell junction (ortholog); protein-containing complex (ortholog) NW_004955559 1830574 1844107 + 102020728 AGCD01073672;AGCD01073673;AGCD01073674;AGCD01073675;GBBH01005709;GBDF01267130;XM_013508989 XP_013364443 MODEL 8807031 pseudo LOC102026168 40S ribosomal protein S8 pseudogene NW_004955444 16578183 16578870 - 102026168 AGCD01039178 MODEL 8723724 protein-coding Slu7 spliceosome associated SLU7 ENCODES a protein that exhibits pre-mRNA 3'-splice site binding (ortholog); second spliceosomal transesterification activity (ortholog); zinc ion binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); cellular response to heat (ortholog); intracellular protein transport (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Weight Gain (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); nuclear speck (ortholog) NW_004955408 14268958 14288114 - 102027148 AGCD01008391;GBDJ01087934;XM_005376265 XP_005376322 MODEL 8762685 protein-coding Reep6 receptor accessory protein 6 INVOLVED IN detection of light stimulus involved in visual perception (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); optic atrophy (ortholog); FOUND IN apical part of cell (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955764 17640 22996 - 102005875 AGCD01078306;GBCE01186476;XM_005415097;XM_005415099;XM_005415100;XM_013510188 XP_005415154;XP_005415156;XP_005415157;XP_013365642 MODEL 8988150 ncrna LOC102005440 uncharacterized LOC102005440 NW_004955405 37765968 37767069 + 102005440 AGCD01005459;GBDF01250670;XR_001236121 MODEL 8985118 protein-coding Plaa phospholipase A2 activating protein ENCODES a protein that exhibits phospholipase A2 activator activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); inflammatory response (ortholog); macroautophagy (ortholog); ASSOCIATED WITH genetic disease (ortholog); Inflammation (ortholog); Neurodevelopmental Disorder with Progressive Microcephaly, Spasticity, and Brain Anomalies (ortholog); FOUND IN ATPase complex (ortholog); cytoplasm (ortholog); cytoplasmic ubiquitin ligase complex (ortholog) NW_004955472 7879196 7915040 + 102027635 AGCD01053633;AGCD01053634;AGCD01053635;GBCE01084855;XM_005401157 XP_005401214 MODEL 8849535 protein-coding LOC102027854 C-type lectin domain family 18 member A NW_004955484 3064220 3074063 + 102027854 AGCD01058153;GBDF01072721;XM_005403467;XM_013503848;XM_013503849 XP_005403524;XP_013359302;XP_013359303 MODEL 9018814 protein-coding Psmd10 proteasome 26S subunit, non-ATPase 10 INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of DNA damage response, signal transduction by p53 class mediator (ortholog); negative regulation of MAPK cascade (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955490 7825202 7832347 + 102014910 AGCD01060265;GBCE01045828;XM_005404680 XP_005404737 MODEL 8821855 protein-coding LOC102010279 guanylate-binding protein 6-like NW_004955423 4800576 4831760 + 102010279 AGCD01023545;AGCD01023546;GBDI01220537;XM_005385092;XM_005385093 XP_005385149;XP_005385150 MODEL 626189194 snorna SNORA19 small nucleolar RNA, H/ACA box 19 8890756 protein-coding Slc43a1 solute carrier family 43 member 1 ENCODES a protein that exhibits L-amino acid transmembrane transporter activity (ortholog); L-isoleucine transmembrane transporter activity (ortholog); L-leucine transmembrane transporter activity (ortholog); INVOLVED IN isoleucine transport (ortholog); L-amino acid transport (ortholog); L-leucine transport (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog); podocyte foot (ortholog) NW_004955511 2474173 2490508 - 102017592 AGCD01066408;GBDJ01234525;XM_005407995;XM_013506490;XM_013506491;XM_013506492;XM_013506493 XP_005408052;XP_013361944;XP_013361945;XP_013361946;XP_013361947 MODEL 9020721 pseudo LOC102010667 60S acidic ribosomal protein P2 pseudogene NW_004955453 8336273 8336716 - 102010667 AGCD01044760;XM_005395716 MODEL 8993271 protein-coding LOC102006869 zinc finger protein 14-like NW_004955453 6825362 6828549 + 102006869 AGCD01044731;XM_005395440 XP_005395497 MODEL 8730436 ncrna LOC102024372 uncharacterized LOC102024372 NW_004955433 3738370 3744365 + 102024372 AGCD01031433;GBDF01008075;XR_001234706;XR_001234707 MODEL 8779878 pseudo LOC102008390 intraflagellar transport protein 74 homolog pseudogene NW_004955411 1172768 1173854 - 102008390 AGCD01011473 MODEL 10255180 protein-coding Proser2 proline and serine rich 2 NW_004955421 27809610 27823125 + 106148411 AGCD01022296;AGCD01022297;GBCB01022185;GBDJ01030727;XM_013513651 XP_013369105 MODEL 8821036 protein-coding Scyl3 SCY1 like pseudokinase 3 ENCODES a protein that exhibits identical protein binding (ortholog); kinase activity (ortholog); INVOLVED IN inflammatory response (ortholog); intracellular protein localization (ortholog); neuron development (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955462 7443841 7477596 + 102008386 AGCD01049305;GBDF01279049;XM_005398176;XM_005398178;XM_005398179;XM_005398180;XM_005398181 XP_005398233;XP_005398235;XP_005398236;XP_005398237;XP_005398238 MODEL 8792815 protein-coding Rtkn rhotekin ENCODES a protein that exhibits GTPase inhibitor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN regulation of apoptotic process (ortholog); Rho protein signal transduction (ortholog); signal transduction (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog) NW_004955424 11344504 11358344 + 102027998 AGCD01024564;GBCB01061023;XM_005385506;XM_005385507;XM_005385508;XM_005385509;XM_013514740 XP_005385563;XP_005385564;XP_005385565;XP_005385566;XP_013370194 MODEL 8935425 protein-coding Trib3 tribbles pseudokinase 3 ENCODES a protein that exhibits enzyme binding (ortholog); kinase activity (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Experimental Liver Cirrhosis (ortholog); Insulin Resistance (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955597 259209 265896 + 102020072 AGCD01076551;AGCD01076552;GBBH01224966;XM_005414716 XP_005414773 MODEL 8942972 protein-coding Pttg1ip PTTG1 interacting protein ENCODES a protein that exhibits p53 binding (ortholog); INVOLVED IN negative regulation of DNA damage response, signal transduction by p53 class mediator (ortholog); negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); positive regulation of protein ubiquitination (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 41753855 41769107 - 102010126 AGCD01007879;AGCD01007880;AGCD01007881;GBCE01004518;GBDI01017833;XM_005375903 XP_005375960 MODEL 9043410 ncrna LOC102023360 uncharacterized LOC102023360 NW_004955418 8489605 8491347 + 102023360 AGCD01018923;GBDF01179218;XR_260551 MODEL 8840842 protein-coding LOC102015640 ubiquitin carboxyl-terminal hydrolase 17-like protein 6 NW_004955487 109914 111590 - 102015640 AGCD01059207;XM_005404451 XP_005404508 MODEL 8717769 protein-coding Tomm40l translocase of outer mitochondrial membrane 40 like ENCODES a protein that exhibits mitochondrion targeting sequence binding (ortholog); preprotein binding (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrial outer membrane translocase complex (ortholog); mitochondrion (ortholog) NW_004955468 12981023 12984999 + 102008304 AGCD01052194;GBCE01159608;XM_005400273;XM_013522479 XP_005400330;XP_013377933 MODEL 9005705 protein-coding Lgr5 leucine rich repeat containing G protein-coupled receptor 5 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN epithelial cell proliferation involved in renal tubule morphogenesis (ortholog); hair follicle development (ortholog); inner ear development (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH ankyloglossia (ortholog); basal cell carcinoma (ortholog); Colonic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog); trans-Golgi network membrane (ortholog) NW_004955405 11507083 11574504 + 102018887 AGCD01004834;AGCD01004835;GBBH01016179;XM_005374681 XP_005374738 MODEL 9002617 protein-coding Ppp3r1 protein phosphatase 3 regulatory subunit B, alpha ENCODES a protein that exhibits enzyme binding (ortholog); phosphatase binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN branching involved in blood vessel morphogenesis (ortholog); calcineurin-NFAT signaling cascade (ortholog); epithelial to mesenchymal transition (ortholog); PARTICIPATES IN calcineurin signaling pathway; interleukin-12 signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); dilated cardiomyopathy (ortholog); Left Ventricular Hypertrophy (ortholog); FOUND IN calcineurin complex (ortholog); glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog) NW_004955424 16624214 16690783 + 102022718 AGCD01024746;AGCD01024747;AGCD01024748;GBDF01190278;XM_005385670;XM_005385671;XM_005385672 XP_005385727;XP_005385728;XP_005385729 MODEL 9003741 protein-coding Slamf6 SLAM family member 6 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN natural killer cell differentiation (ortholog); natural killer cell proliferation (ortholog); positive regulation of interleukin-17 production (ortholog); FOUND IN plasma membrane (ortholog) NW_004955468 12233629 12264502 - 102003749 AGCD01052148;GBBH01155535;XM_013522471;XM_013522472;XM_013522473;XM_013522474 XP_013377925;XP_013377926;XP_013377927;XP_013377928 MODEL 8982554 protein-coding LOC102018708 free fatty acid receptor 2 NW_004955468 4681077 4683818 + 102018708 AGCD01051919;XM_005400052;XM_013522278;XM_013522279 XP_005400109;XP_013377732;XP_013377733 MODEL 8946993 pseudo LOC102012669 protein slowmo homolog 2-like NW_004955503 6860185 6860772 + 102012669 AGCD01064772 MODEL 9010040 ncrna LOC102025795 uncharacterized LOC102025795 NW_004955482 5843044 5856501 - 102025795 AGCD01057350;AGCD01057351;GBDF01285875;XR_263835 MODEL 10298459 ncrna LOC106147067 uncharacterized LOC106147067 NW_004955514 4005456 4007317 - 106147067 AGCD01067124;GBDF01249505;XR_001231783 MODEL 9040801 protein-coding LOC102030314 histone H2B type 1-A ENCODES a protein that exhibits DNA binding (ortholog); histone binding (ortholog); INVOLVED IN chromatin organization (ortholog); chromosome organization (ortholog); inflammatory response (ortholog); FOUND IN cell surface (ortholog); nucleosome (ortholog); nucleus (ortholog) NW_004955483 1354587 1358368 - 102030314 AGCD01057645;GBDF01039596;XM_005403343 XP_005403400 MODEL 9017711 protein-coding Pde12 phosphodiesterase 12 ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); exonuclease activity (ortholog); poly(A)-specific ribonuclease activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to dsRNA (ortholog); cellular response to interferon-alpha (ortholog); ASSOCIATED WITH Cardiovirus Infections (ortholog); respiratory syncytial virus infectious disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955430 7272911 7277726 + 102014594 AGCD01029342;GBDF01052386;XM_005387409 XP_005387466 MODEL 8781934 pseudo LOC102006517 vegetative cell wall protein gp1-like NW_004955588 440381 447451 - 102006517 AGCD01076110 MODEL 8933989 protein-coding Serinc5 serine incorporator 5 ENCODES a protein that exhibits acetyltransferase activator activity (ortholog); molecular carrier activity (ortholog); phospholipid scramblase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); myelination (ortholog); phosphatidylserine metabolic process (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); myelin sheath (ortholog) NW_004955418 29502562 29573966 + 102006460 AGCD01019468;AGCD01019469;AGCD01019470;GBBH01115821;GBCB01111527;XM_013513014 XP_013368468 MODEL 8902060 ncrna LOC102027178 uncharacterized LOC102027178 NW_004955477 1342988 1354966 + 102027178 AGCD01055504;GBDF01113134;XR_263651 MODEL 8871452 protein-coding Reg4 regenerating family member 4 ENCODES a protein that exhibits calcium ion binding (ortholog); heparin binding (ortholog); mannan binding (ortholog); INVOLVED IN response to bacterium (ortholog); ASSOCIATED WITH Stomach Neoplasms (ortholog); FOUND IN cytoplasm (ortholog) NW_004955435 22886351 22895884 - 102018638 AGCD01033523;XM_005389090 XP_005389147 MODEL 8810979 protein-coding LOC102028874 cytochrome P450 2U1 ENCODES a protein that exhibits arachidonate omega-hydroxylase activity (ortholog); long-chain fatty acid omega-hydroxylase activity (ortholog); INVOLVED IN omega-hydroxylase P450 pathway (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Developmental Disabilities (ortholog); epilepsy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); mitochondrial inner membrane (ortholog) NW_004955496 1873031 1887840 - 102028874 AGCD01062260;GBCE01114123;GBDJ01264560;XM_005406282 XP_005406339 MODEL 8882966 protein-coding Elovl5 ELOVL fatty acid elongase 5 ENCODES a protein that exhibits fatty acid elongase activity (ortholog); INVOLVED IN fatty acid biosynthetic process (ortholog); fatty acid elongation, monounsaturated fatty acid (ortholog); fatty acid elongation, polyunsaturated fatty acid (ortholog); PARTICIPATES IN alpha-linolenic acid metabolic pathway; linoleic acid metabolic pathway; ASSOCIATED WITH atherosclerosis (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN dendritic tree (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955411 2747232 2812544 + 102011288 AGCD01011516;AGCD01011517;AGCD01011518;GBDF01007036;XM_005377606 XP_005377663 MODEL 8966592 protein-coding Pou2af3 POU class 2 homeobox associating factor 3 ENCODES a protein that exhibits DNA binding (ortholog); transcription coactivator activity (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955412 13090206 13098642 + 102012297 AGCD01012829;GBBH01143846;GBCE01075437;XM_013511188 XP_013366642 MODEL 8876101 protein-coding Psmd11 proteasome 26S subunit, non-ATPase 11 INVOLVED IN proteasome assembly (ortholog); regulation of AMPA receptor activity (ortholog); stem cell differentiation (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog); proteasome regulatory particle (ortholog) NW_004955481 7364543 7402770 + 102027185 AGCD01057061;AGCD01057062;AGCD01057063;GBDF01050146;XM_005402826;XM_013503426 XP_005402883;XP_013358880 MODEL 9022800 protein-coding LOC102011031 odorant-binding protein 2b-like NW_004955513 2641785 2645058 + 102011031 AGCD01066883;GBBH01003721;XM_005408423;XM_013506570 XP_005408480;XP_013362024 MODEL 8877137 pseudo LOC102009484 signal peptide peptidase-like 3 pseudogene NW_004955412 33749516 33760698 + 102009484 AGCD01013370 MODEL 10235076 ncrna LOC106148160 uncharacterized LOC106148160 NW_004955416 30092057 30093623 - 106148160 AGCD01017679;GBDK01414572;XR_001233339 MODEL 8834281 protein-coding LOC102003683 taste receptor type 2 member 7-like NW_004955432 18798901 18799800 + 102003683 AGCD01031161;XM_005388153 XP_005388210 MODEL 8864349 protein-coding Rhpn2 rhophilin Rho GTPase binding protein 2 INVOLVED IN glomerular filtration (ortholog); negative regulation of stress fiber assembly (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955468 4932437 4976584 + 102022907 AGCD01051930;GBCQ01096955;GBDF01303848;XM_013522388 XP_013377842 MODEL 8967454 ncrna LOC102011431 uncharacterized LOC102011431 NW_004955414 6656760 6678985 + 102011431 AGCD01014926;GBBH01097014;XR_001233094;XR_001233095;XR_001233097;XR_260157 MODEL 9050020 protein-coding Brd2 bromodomain containing 2 ENCODES a protein that exhibits acetylation-dependent protein binding (ortholog); histone H3K14ac reader activity (ortholog); histone H4K12ac reader activity (ortholog); INVOLVED IN chromatin looping (ortholog); neural tube closure (ortholog); positive regulation of T-helper 17 cell lineage commitment (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH B-cell lymphoma (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); glioblastoma (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955437 1584890 1592486 + 102024381 AGCD01034219;GBCB01001835;XM_005389461 XP_005389518 MODEL 8892707 pseudo LOC102028521 4-hydroxybenzoate polyprenyltransferase, mitochondrial pseudogene NW_004955468 10585178 10586118 + 102028521 AGCD01052090 MODEL 8827241 protein-coding Rab6a RAB6A, member RAS oncogene family ENCODES a protein that exhibits ATPase activator activity (ortholog); ATPase binding (ortholog); G protein activity (ortholog); INVOLVED IN antigen processing and presentation (ortholog); early endosome to Golgi transport (ortholog); peptidyl-cysteine methylation (ortholog); FOUND IN acrosomal membrane (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955414 17758071 17806727 + 102013278 AGCD01015251;AGCD01015252;AGCD01015253;AGCD01015254;AGCD01015255;GBDJ01023296;XM_005379939;XM_005379940 XP_005379996;XP_005379997 MODEL 8959483 protein-coding Slurp1 secreted LY6/PLAUR domain containing 1 ENCODES a protein that exhibits acetylcholine receptor activator activity (ortholog); INVOLVED IN locomotory behavior (ortholog); negative regulation of cell migration (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH mal de Meleda (ortholog); palmoplantar keratosis (ortholog); FOUND IN extracellular region (ortholog) NW_004955454 1440534 1449123 - 102020752 AGCD01044969;GBDI01110694;XM_005395737;XM_005395738;XM_013520069 XP_005395794;XP_005395795;XP_013375523 MODEL 9026843 protein-coding Plaat1 phospholipase A and acyltransferase 1 ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); glycerophospholipase activity (ortholog); INVOLVED IN ether lipid metabolic process (ortholog); N-acylphosphatidylethanolamine metabolic process (ortholog); peroxisome organization (ortholog); FOUND IN cytoplasm (ortholog); nuclear envelope lumen (ortholog); nucleus (ortholog) NW_004955420 15305901 15326444 - 102008629 AGCD01020968;GBBH01131778;XM_005383210;XM_005383211 XP_005383267;XP_005383268 MODEL 8857530 pseudo LOC102006520 pinin-like NW_004955402 55201413 55203705 - 102006520 AGCD01001428 MODEL 8771443 protein-coding Vxn vexin INVOLVED IN neurogenesis (ortholog); neuron differentiation (ortholog); FOUND IN nucleus (ortholog); plasma membrane (ortholog) NW_004955444 12659894 12684919 - 102016529 AGCD01039078;GBCQ01140368;XM_005392150;XM_005392151;XM_005392152 XP_005392207;XP_005392208;XP_005392209 MODEL 9000347 protein-coding Parp2 poly(ADP-ribose) polymerase 2 ENCODES a protein that exhibits chromatin binding (ortholog); damaged DNA binding (ortholog); NAD DNA ADP-ribosyltransferase activity (ortholog); INVOLVED IN base-excision repair (ortholog); decidualization (ortholog); DNA ADP-ribosylation (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Cardiomegaly (ortholog); lipodystrophy (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955550 1138976 1152293 + 102020614 AGCD01072551;GBDF01189210;XM_005412049 XP_005412106 MODEL 8838619 ncrna LOC102023362 uncharacterized LOC102023362 NW_004955419 14127307 14131078 + 102023362 AGCD01020012;GBDF01288602;XR_260629 MODEL 8722000 protein-coding LOC102019110 natural resistance-associated macrophage protein 2-like NW_004955547 1413554 1447203 - 102019110 AGCD01072222;AGCD01072223;GBDJ01084229;XM_013508457 XP_013363911 MODEL 9000332 ncrna LOC102018711 uncharacterized LOC102018711 NW_004955469 11293500 11308124 + 102018711 AGCD01052559;AGCD01052560;GBDF01306362;XR_263452 MODEL 9050442 protein-coding Psmd12 proteasome 26S subunit, non-ATPase 12 INVOLVED IN regulation of AMPA receptor activity (ortholog); ASSOCIATED WITH contact dermatitis (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog); proteasome regulatory particle (ortholog) NW_004955478 6536207 6558156 - 102010055 AGCD01055900;GBCB01003349;XM_005402153 XP_005402210 MODEL 10130379 protein-coding LOC106147068 uncharacterized LOC106147068 NW_004955514 2589193 2590069 + 106147068 AGCD01067084;GBCE01063443;XM_013506860 XP_013362314 MODEL 39133679 snorna U3 Small nucleolar RNA U3 8954256 protein-coding LOC102005442 endothelin-converting enzyme-like 1 NW_004955453 3475528 3480680 + 102005442 AGCD01044660;GBDJ01085718;GBDK01397222;XM_013520001 XP_013375455 MODEL 9036915 pseudo LOC102010280 tubulin-folding cofactor B pseudogene NW_004955495 5024249 5025001 + 102010280 AGCD01061970 MODEL 626189185 snorna SNORA20 small nucleolar RNA, H/ACA box 20 8790990 protein-coding Thap2 THAP domain containing 2 FOUND IN nucleolus (ortholog) NW_004955405 11647989 11665110 + 102003723 AGCD01004835;XM_013517628 XP_013373082 MODEL 8909994 protein-coding LOC102024378 DNA helicase MCM9-like NW_004955436 1593994 1628221 - 102024378 AGCD01033582;GBBH01209119;GBBH01209120;XM_013516639 XP_013372093 MODEL 8887040 protein-coding LOC102008392 olfactory receptor 147-like NW_004955412 25370885 25371823 - 102008392 AGCD01013151;XM_005378421 XP_005378478 MODEL 8824914 protein-coding Slx1a structure-specific endonuclease subunit SLX1A ENCODES a protein that exhibits 5'-flap endonuclease activity (ortholog); crossover junction DNA endonuclease activity (ortholog); INVOLVED IN DNA double-strand break processing involved in repair via single-strand annealing (ortholog); DNA repair (ortholog); double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH Fanconi-like syndrome (ortholog); FOUND IN nuclear chromosome (ortholog); nucleoplasm (ortholog); Slx1-Slx4 complex (ortholog) NW_004955493 6797913 6800555 - 102019283 AGCD01061140;AGCD01061141;GBBH01164343;GBDF01119426;XM_013504818 XP_013360272 MODEL 8794988 protein-coding Proser3 proline and serine rich 3 FOUND IN centrosome (ortholog) NW_004955468 2786736 2796851 - 102023137 AGCD01051838;GBDI01293635;XM_013522290 XP_013377744 MODEL 8970278 protein-coding Tril TLR4 interactor with leucine rich repeats ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); INVOLVED IN regulation of cytokine production involved in immune response (ortholog); toll-like receptor 4 signaling pathway (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN lipopolysaccharide receptor complex (ortholog) NW_004955410 30497953 30503444 - 102015485 AGCD01011308;GBDK01079499;XM_005377483 XP_005377540 MODEL 8935052 protein-coding LOC102027180 angiotensin-converting enzyme-like NW_004955478 8264799 8276647 - 102027180 AGCD01056017;GBDF01043240;XM_005402212;XM_005402214;XM_013503170;XM_013503171 XP_005402269;XP_005402271;XP_013358624;XP_013358625 MODEL 8837092 ncrna LOC102021638 uncharacterized LOC102021638 NW_004955411 24539744 24554375 - 102021638 AGCD01012127;GBDF01145167;XR_259941 MODEL 8913123 protein-coding Plaat5 phospholipase A and acyltransferase 5 ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); glycerophospholipid phospholipase A1 activity (ortholog); INVOLVED IN N-acylphosphatidylethanolamine metabolic process (ortholog) NW_004955599 217365 247914 - 102029811 AGCD01076631;AGCD01076632;AGCD01076633;AGCD01076634;AGCD01076635;AGCD01076636;GBDF01006273;XM_005414748;XM_005414749 XP_005414805;XP_005414806 MODEL 9049206 protein-coding Snrk SNF related kinase ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN protein phosphorylation (ortholog); FOUND IN nucleus (ortholog) NW_004955420 27710536 27754682 - 102012099 AGCD01021458;AGCD01021459;GBBH01227690;GBDK01081580;XM_013513447;XM_013513448 XP_013368901;XP_013368902 MODEL 8971050 protein-coding Rtkn2 rhotekin 2 INVOLVED IN adaptive immune response (ortholog); hemopoiesis (ortholog); intracellular signal transduction (ortholog); ASSOCIATED WITH interstitial lung disease 2 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955425 15484287 15563535 - 102020354 AGCD01025582;AGCD01025583;AGCD01025584;AGCD01025585;AGCD01025586;GBDF01039332;XM_005385949;XM_005385950;XM_013514864 XP_005386006;XP_005386007;XP_013370318 MODEL 8758332 pseudo LOC102015642 60S ribosomal protein L31 pseudogene NW_004955493 5270440 5279258 - 102015642 AGCD01061061 MODEL 8998142 protein-coding Ptx3 pentraxin 3 ENCODES a protein that exhibits (1->3)-beta-D-glucan binding (ortholog); complement component C1q complex binding (ortholog); identical protein binding (ortholog); INVOLVED IN extracellular matrix organization (ortholog); host-mediated suppression of symbiont invasion (ortholog); innate immune response (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); cystic fibrosis (ortholog); Diabetic Foot (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog) NW_004955448 8366795 8373010 + 102016862 AGCD01041442;AGCD01041443;GBBH01137479;GBCQ01115782;XM_013518628 XP_013374082 MODEL 8821664 protein-coding LOC102026169 ice-structuring glycoprotein-like NW_004955447 2567337 2575035 - 102026169 AGCD01040547;AGCD01040548;GBBH01107260;XM_005392788 XP_005392845 MODEL 8705041 protein-coding Tomm5 translocase of outer mitochondrial membrane 5 PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; presequence pathway of mitochondrial protein import; FOUND IN mitochondrial outer membrane translocase complex (ortholog); mitochondrion (ortholog) NW_004955419 28897328 28900289 + 102006133 AGCD01020479;GBCQ01035619;XM_005382876 XP_005382933 MODEL 8963814 protein-coding LOC102028877 desert hedgehog protein NW_004955500 7916583 7920075 - 102028877 AGCD01063959;AGCD01063960;GBCQ01087657;GBDK01383445;XM_013505717 XP_013361171 MODEL 8775547 protein-coding Rasl10a RAS like family 10 member A NW_004955455 3618656 3621299 - 102005224 AGCD01045640;AGCD01045641;GBDF01268764;XM_005396200 XP_005396257 MODEL 8881227 pseudo LOC102009487 heterogeneous nuclear ribonucleoprotein A1-like NW_004955467 9990149 9991458 + 102009487 AGCD01051538 MODEL 10236746 protein-coding LOC106149907 translation initiation factor IF-2-like NW_004955457 7490189 7514301 - 106149907 AGCD01046883;GBCQ01126269;GBDK01124100;XM_013520660 XP_013376114 MODEL 8885428 protein-coding Lgr6 leucine rich repeat containing G protein-coupled receptor 6 INVOLVED IN bone regeneration (ortholog); cell population proliferation (ortholog); positive regulation of cell migration (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN vesicle (ortholog) NW_004955406 38274998 38381677 + 102005893 AGCD01006599;AGCD01006600;GBBH01110778;GBBH01131676;XM_013522356 XP_013377810 MODEL 8854103 ncrna LOC102027861 uncharacterized LOC102027861 NW_004955488 5636313 5673038 - 102027861 AGCD01059625;AGCD01059626;AGCD01059627;AGCD01059628;GBDF01251639;XR_264002 MODEL 9060807 pseudo LOC102012670 coiled-coil domain-containing protein 112 pseudogene NW_004955427 341416 343438 - 102012670 AGCD01026827;AGCD01026828 MODEL 9027412 ncrna LOC102017553 uncharacterized LOC102017553 NW_004955411 11887043 11891142 - 102017553 AGCD01011833;GBDF01079416;XR_259932 MODEL 8716498 protein-coding LOC102030315 ATP-dependent RNA helicase DDX19A NW_004955484 3142544 3169853 + 102030315 AGCD01058156;AGCD01058157;AGCD01058158;GBDJ01191109;XM_005403476 XP_005403533 MODEL 8939475 pseudo LOC102011433 zinc finger protein 35-like NW_004955414 19831492 19837666 - 102011433 AGCD01015339 MODEL 8809822 pseudo LOC102010670 ADP-ribosylation factor-like protein 8B pseudogene NW_004955455 5770199 5771659 - 102010670 AGCD01045751 MODEL 8960403 protein-coding LOC102006871 torsin-1A-interacting protein 2, isoform IFRG15 NW_004955406 19105586 19108003 - 102006871 AGCD01006074;GBDJ01313313;XM_005374968 XP_005375025 MODEL 8724894 protein-coding Slc43a2 solute carrier family 43 member 2 ENCODES a protein that exhibits L-amino acid transmembrane transporter activity (ortholog); L-isoleucine transmembrane transporter activity (ortholog); L-leucine transmembrane transporter activity (ortholog); INVOLVED IN isoleucine transport (ortholog); L-amino acid transport (ortholog); L-leucine transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955481 1550289 1597213 + 102019390 AGCD01056836;AGCD01056837;AGCD01056838;GBDF01222975;XM_005402617;XM_005402618;XM_013503413 XP_005402674;XP_005402675;XP_013358867 MODEL 8820318 protein-coding Sdad1 SDA1 domain containing 1 INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); FOUND IN nucleolus (ortholog) NW_004955433 690305 717737 - 102008446 AGCD01031335;GBBH01025561;XM_005388162 XP_005388219 MODEL 8844512 protein-coding Brd3 bromodomain containing 3 ENCODES a protein that exhibits histone H3K18cr reader activity (ortholog); histone H3K27cr reader activity (ortholog); histone H3K9cr reader activity (ortholog); INVOLVED IN endodermal cell differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); protein localization to chromatin (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH medulloblastoma (ortholog); primary ovarian insufficiency (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); nucleoplasm (ortholog) NW_004955513 3145267 3164791 - 102023386 AGCD01066895;AGCD01066896;GBDK01134998;XM_013506673;XM_013506674;XM_013506675;XM_013506676 XP_013362127;XP_013362128;XP_013362129;XP_013362130 MODEL 9012187 protein-coding Rab6b RAB6B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); myosin V binding (ortholog); INVOLVED IN Golgi organization (ortholog); protein localization to Golgi membrane (ortholog); FOUND IN cytoplasmic vesicle (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog) NW_004955501 4751647 4781094 + 102026339 AGCD01064144;GBBH01065558;GBCQ01069711;XM_013505801 XP_013361255 MODEL 41410890 protein-coding REG4 rerating family member 4 8915768 protein-coding Serp1 stress associated endoplasmic reticulum protein 1 INVOLVED IN endoplasmic reticulum unfolded protein response (ortholog); glucose metabolic process (ortholog); muscle organ morphogenesis (ortholog); FOUND IN cytoplasmic microtubule (ortholog) NW_004955448 1738242 1742807 - 102024738 AGCD01041266;AGCD01041267;GBCB01088573;GBDF01046142;XM_005393009 XP_005393066 MODEL 8729294 protein-coding LOC102025800 putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC100288842 NW_004955419 7230483 7237673 - 102025800 AGCD01019875;XM_005382927 XP_005382984 MODEL 9026268 protein-coding Elovl6 ELOVL fatty acid elongase 6 ENCODES a protein that exhibits acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); fatty acid elongase activity (ortholog); INVOLVED IN fatty acid elongation (ortholog); fatty acid elongation, monounsaturated fatty acid (ortholog); fatty acid elongation, saturated fatty acid (ortholog); ASSOCIATED WITH congestive heart failure (ortholog); obesity (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); fatty acid elongase complex (ortholog) NW_004955496 179634 301908 + 102022717 AGCD01062223;AGCD01062224;AGCD01062225;GBCQ01134913;XM_005406181;XM_005406182;XM_013505419 XP_005406238;XP_005406239;XP_013360873 MODEL 9022313 protein-coding Slamf7 SLAM family member 7 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of natural killer cell activation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); FOUND IN endoplasmic reticulum (ortholog); external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955468 12440157 12457445 + 102020900 AGCD01052152;GBDK01184416;XM_005400217;XM_013522531 XP_005400274;XP_013377985 MODEL 8706434 protein-coding Ppp3r2 protein phosphatase 3 regulatory subunit B, beta ENCODES a protein that exhibits calcium-dependent protein serine/threonine phosphatase regulator activity (ortholog); INVOLVED IN penetration of zona pellucida (ortholog); PARTICIPATES IN calcineurin signaling pathway; ASSOCIATED WITH traumatic brain injury (ortholog); FOUND IN calcineurin complex (ortholog); sperm flagellum (ortholog); sperm midpiece (ortholog) NW_004955419 24252772 24253730 + 102006666 AGCD01020340;GBDF01003998;XM_005382792 XP_005382849 MODEL 10061126 ncrna LOC106148161 uncharacterized LOC106148161 NW_004955416 28679287 28697622 - 106148161 AGCD01017635;GBCE01062083;XR_001233342;XR_001233343;XR_001233344 MODEL 8913815 ncrna LOC102003684 uncharacterized LOC102003684 NW_004955520 82188 91113 - 102003684 AGCD01068004;GBDI01367358;XR_264580 MODEL 8991010 protein-coding Pde1a phosphodiesterase 1A ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); 3',5'-cyclic-nucleotide phosphodiesterase activity (ortholog); INVOLVED IN cGMP catabolic process (ortholog); regulation of smooth muscle cell apoptotic process (ortholog); regulation of smooth muscle cell proliferation (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Left Ventricular Hypertrophy (ortholog); FOUND IN neuronal cell body (ortholog); sperm flagellum (ortholog) NW_004955403 14906069 15202710 + 102016868 AGCD01002036;AGCD01002037;AGCD01002038;AGCD01002039;AGCD01002040;AGCD01002041;GBDJ01349990;XM_005373347;XM_005373349;XM_005373350;XM_005373351;XM_013512476;XM_013512480;XM_013512485;XM_013512495 XP_005373404;XP_005373406;XP_005373407;XP_005373408;XP_013367930;XP_013367934;XP_013367939;XP_013367949 MODEL 8989355 protein-coding Snrnp200 small nuclear ribonucleoprotein U5 subunit 200 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); helicase activity (ortholog); identical protein binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosome conformational change to release U4 (or U4atac) and U1 (or U11) (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955470 3828943 3856059 - 102016149 AGCD01052712;GBCQ01004600;XM_005400656 XP_005400713 MODEL 8882421 protein-coding Ptx4 pentraxin 4 NW_004955442 15750881 15757906 + 102028804 AGCD01037878;GBDF01124152;XM_013517677;XM_013517678 XP_013373131;XP_013373132 MODEL 8876880 protein-coding LOC102028523 olfactory receptor 52Z1-like NW_004955414 21147189 21165031 - 102028523 AGCD01015407;AGCD01015408;AGCD01015409;XM_013511730 XP_013367184 MODEL 8828322 protein-coding LOC102019111 keratin, type II cytoskeletal 6A NW_004955547 2871318 2880666 - 102019111 AGCD01072300;GBDJ01268420;XM_005411965 XP_005412022 MODEL 8768577 protein-coding LOC102018712 olfactory receptor 51F2 NW_004955414 20398735 20399715 + 102018712 AGCD01015371;XM_005380056 XP_005380113 MODEL 8910875 protein-coding Thap3 THAP domain containing 3 INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog) NW_004955486 6012557 6018101 - 102024574 AGCD01059101;AGCD01059102;GBBH01207080;GBDI01220594;XM_013504317 XP_013359771 MODEL 8935659 pseudo LOC102006522 60S ribosomal protein L27a pseudogene NW_004955402 43985649 43988282 - 102006522 AGCD01001085;XM_005373176 MODEL 8899534 protein-coding Pou2f1 POU class 2 homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN lens induction in camera-type eye (ortholog); liver regeneration (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN forkhead class A signaling pathway; RNA polymerase III transcription pathway; FOUND IN nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog); transcription regulator complex (ortholog) NW_004955462 9545122 9710190 - 102024535 AGCD01049339;AGCD01049340;AGCD01049341;AGCD01049342;GBDJ01116013;XM_005398227;XM_005398228;XM_005398229;XM_005398232;XM_013521422 XP_005398284;XP_005398285;XP_005398286;XP_005398289;XP_013376876 MODEL 8769994 protein-coding Plac1 placenta enriched 1 INVOLVED IN placenta development (ortholog); spongiotrophoblast layer developmental growth (ortholog) NW_004955473 264265 415616 + 102023583 AGCD01053834;AGCD01053835;AGCD01053836;GBDF01249559;XM_005401198;XM_013523053 XP_005401255;XP_013378507 MODEL 8788450 protein-coding Trim10 tripartite motif containing 10 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); host-mediated suppression of symbiont invasion (ortholog); innate immune response (ortholog); ASSOCIATED WITH irritant dermatitis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955583 268856 277079 - 102012818 AGCD01075808;GBBH01166081;XM_005414300 XP_005414357 MODEL 8899423 protein-coding Parp3 poly(ADP-ribose) polymerase family member 3 ENCODES a protein that exhibits NAD DNA ADP-ribosyltransferase activity (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN DNA ADP-ribosylation (ortholog); double-strand break repair (ortholog); double-strand break repair via nonhomologous end joining (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; FOUND IN chromosome (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955532 3591484 3597549 + 102022324 AGCD01070288;GBDK01070563;XM_005410330;XM_005410331;XR_001232013 XP_005410387;XP_005410388 MODEL 9050014 ncrna LOC102023363 uncharacterized LOC102023363 NW_004955420 10881689 10909589 + 102023363 AGCD01020795;AGCD01020796;GBDF01306314;XR_260698 MODEL 8728632 protein-coding LOC102025804 proline-rich receptor-like protein kinase PERK10 NW_004955420 28088748 28094781 - 102025804 AGCD01021470;GBCB01093637;XM_013513522;XR_001233752 XP_013368976 MODEL 8778454 protein-coding Ribc1 RIB43A domain with coiled-coils 1 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955475 468435 486441 + 102015509 AGCD01054692;GBCE01170361;XM_005401496;XM_005401497;XM_005401498;XM_005401499;XM_005401502 XP_005401553;XP_005401554;XP_005401555;XP_005401556;XP_005401559 MODEL 39133554 snorna U3 Small nucleolar RNA U3 8996922 protein-coding LOC102027867 histone acetyltransferase KAT8-like NW_004955493 7950497 7957942 + 102027867 AGCD01061243;GBDI01135850;XM_005405297 XP_005405354 MODEL 8889435 protein-coding Psmd13 proteasome 26S subunit, non-ATPase 13 INVOLVED IN meiosis I (ortholog); regulation of AMPA receptor activity (ortholog); ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog); proteasome regulatory particle (ortholog) NW_004955476 11782461 11794839 - 102029619 AGCD01055474;GBDJ01072396;XM_005401886 XP_005401943 MODEL 8774380 protein-coding LOC102005443 keratin-associated protein 20-1-like NW_004955407 30075930 30076100 + 102005443 AGCD01007625;XM_005375636 XP_005375693 MODEL 39131764 snorna SNORA21 small nucleolar RNA, H/ACA box 21 8917252 pseudo LOC102030316 rho GTPase-activating protein 20 pseudogene NW_004955484 4111427 4118345 + 102030316 AGCD01058202 MODEL 8892192 pseudo LOC102011032 aurora kinase A pseudogene NW_004955431 1227505 1229111 - 102011032 AGCD01029892 MODEL 8926172 ncrna LOC102010281 uncharacterized LOC102010281 NW_004955497 1128473 1136942 + 102010281 AGCD01062452;XR_001231423;XR_264189 MODEL 9002280 protein-coding LOC102008394 arachidonate 12-lipoxygenase, 12S-type NW_004955467 9919322 9931806 - 102008394 AGCD01051535;AGCD01051536;GBBH01140041;XM_005399578 XP_005399635 MODEL 8723073 ncrna LOC102027181 uncharacterized LOC102027181 NW_004955416 25520733 25572764 - 102027181 AGCD01017588;AGCD01017589;GBDF01075796;XR_001233375;XR_001233376;XR_260422 MODEL 8837563 ncrna LOC102015643 uncharacterized LOC102015643 NW_004955422 29155045 29182205 + 102015643 AGCD01023379;GBCB01061039;XR_001233972;XR_001233973 MODEL 8845900 ncrna LOC102021639 uncharacterized LOC102021639 NW_004955411 34857471 34861212 + 102021639 AGCD01012416;GBDF01017865;XR_001232828;XR_259953 MODEL 8740038 protein-coding Wac WW domain containing adaptor with coiled-coil ENCODES a protein that exhibits chromatin binding (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); DNA damage response (ortholog); mitotic G1 DNA damage checkpoint signaling (ortholog); ASSOCIATED WITH DeSanto-Shinawi syndrome (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleoplasm (ortholog); spliceosomal complex (ortholog) NW_004955462 2358842 2435644 + 102015612 AGCD01049165;AGCD01049166;GBBH01064776;XM_005398110;XM_013521376;XM_013521377;XM_013521378;XM_013521379;XM_013521380 XP_005398167;XP_013376830;XP_013376831;XP_013376832;XP_013376833;XP_013376834 MODEL 10132148 ncrna LOC106147069 uncharacterized LOC106147069 NW_004955515 3679018 3718431 + 106147069 AGCD01067298;AGCD01067299;AGCD01067300;AGCD01067301;GBDI01252675;XR_001231785 MODEL 10141913 protein-coding Serpina10 serpin family A member 10 INVOLVED IN liver regeneration (ortholog); regulation of acrosome reaction (ortholog); PARTICIPATES IN coagulation cascade pathway; ASSOCIATED WITH Liver Metastasis (ortholog); nephrotic syndrome type 5 (ortholog); small intestine carcinoid neuroendocrine tumor (ortholog) NW_004955438 16335201 16345093 - 106149168 AGCD01035404;AGCD01035405;XM_013517250;XM_013517251 XP_013372704;XP_013372705 MODEL 8899079 protein-coding LOC102009491 olfactory receptor 52N1-like NW_004955414 21756367 21757263 - 102009491 AGCD01015432;XM_013511765 XP_013367219 MODEL 8763529 protein-coding Slamf8 SLAM family member 8 ENCODES a protein that exhibits identical protein binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN B-1 B cell lineage commitment (ortholog); cellular response to xenobiotic stimulus (ortholog); defense response to bacterium (ortholog); ASSOCIATED WITH inflammatory bowel disease (ortholog) NW_004955468 11623092 11632566 + 102008521 AGCD01052136;GBBH01203155;XM_005400176 XP_005400233 MODEL 8854809 protein-coding Rasl10b RAS like family 10 member B INVOLVED IN positive regulation of peptide hormone secretion (ortholog); regulation of systemic arterial blood pressure by atrial natriuretic peptide (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog) NW_004955481 10183635 10192155 + 102019805 AGCD01057138;GBCB01022088;GBCE01123565;XM_005402887 XP_005402944 MODEL 10121481 protein-coding LOC106149908 translation initiation factor IF-2-like NW_004955457 7661508 7684550 + 106149908 AGCD01046885;GBDF01185661;XM_013520661 XP_013376115 MODEL 8936987 pseudo LOC102012671 pescadillo homolog pseudogene NW_004955428 5346972 5362433 + 102012671 AGCD01027708;XR_261310 MODEL 8745785 protein-coding Ppp4c protein phosphatase 4 catalytic subunit ENCODES a protein that exhibits lamin binding (ortholog); phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN cellular response to interleukin-1 (ortholog); dephosphorylation (ortholog); negative regulation of protein phosphorylation (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH coronary artery disease (ortholog); oligoasthenoteratozoospermia (ortholog); spondylocostal dysostosis 5 (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955493 6894849 6901344 - 102022090 AGCD01061147;GBDF01000385;XM_005405187;XM_005405188 XP_005405244;XP_005405245 MODEL 8851183 pseudo LOC102028526 phosphoglycerate mutase 1-like NW_004955414 5891505 5892359 + 102028526 AGCD01014904 MODEL 8885086 protein-coding Lgsn lengsin, lens protein with glutamine synthetase domain FOUND IN plasma membrane (ortholog) NW_004955502 522492 551842 + 102024138 AGCD01064244;AGCD01064245;GBDK01178703;XM_005406877;XM_013505813 XP_005406934;XP_013361267 MODEL 8919269 ncrna LOC102024384 uncharacterized LOC102024384 NW_004955537 2895294 2898325 - 102024384 AGCD01070939;GBCQ01154811;XR_264779 MODEL 8917431 ncrna LOC102011434 uncharacterized LOC102011434 NW_004955470 12696997 12745344 + 102011434 AGCD01052936;AGCD01052937;GBCE01144649;XR_001237028;XR_001237029;XR_263507 MODEL 9005425 protein-coding LOC102006874 immunoglobulin omega chain-like NW_004955455 6441139 6441749 + 102006874 AGCD01045796;GBDI01034310;XM_005396571 XP_005396628 MODEL 8801909 protein-coding Pou2f2 POU class 2 homeobox 2 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cell maturation (ortholog); cellular response to virus (ortholog); mature B cell differentiation (ortholog); ASSOCIATED WITH Familial Prostate Cancer (ortholog); Gastro-Enteropancreatic Neuroendocrine Tumor (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955555 759308 793500 + 102030245 AGCD01073048;AGCD01073049;GBDI01187600;XM_005412389;XM_005412390;XM_005412391;XM_005412392;XM_005412393;XM_013508765;XM_013508766;XM_013508768;XM_013508769;XM_013508770;XM_013508771;XM_013508772;XM_013508774;XM_013508775;XM_013508776 XP_005412446;XP_005412447;XP_005412448;XP_005412449;XP_005412450;XP_013364219;XP_013364220;XP_013364222;XP_013364223;XP_013364224;XP_013364225;XP_013364226;XP_013364228;XP_013364229;XP_013364230 MODEL 151707871 protein-coding BRD3OS BRD3 opposite strand 8993613 protein-coding LOC102018714 serine/threonine-protein kinase 33-like NW_004955414 24256281 24303682 - 102018714 AGCD01015539;AGCD01015540;AGCD01015541;GBDI01261988;XM_013511741 XP_013367195 MODEL 8980514 protein-coding Slc44a1 solute carrier family 44 member 1 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); ethanolamine transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog); ethanolamine transport (ortholog); transmembrane transport (ortholog); ASSOCIATED WITH Childhood-onset Neurodegeneration with Ataxia, Tremor, Optic Atrophy, and Cognitive Decline (ortholog); high grade glioma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); mitochondrial outer membrane (ortholog) NW_004955419 21092583 21277294 - 102029297 AGCD01020265;AGCD01020266;AGCD01020267;AGCD01020268;AGCD01020269;AGCD01020270;GBCQ01164971;XM_005382780 XP_005382837 MODEL 8717993 protein-coding Rtl1 retrotransposon Gag like 1 INVOLVED IN angiogenesis (ortholog); embryonic placenta development (ortholog); gene expression (ortholog); FOUND IN Z disc (ortholog) NW_004955538 177078 181557 - 102020050 AGCD01070991;XM_005410721 XP_005410778 MODEL 8824296 protein-coding Rab7a RAB7A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); bone resorption (ortholog); cholesterol homeostasis (ortholog); PARTICIPATES IN autophagy pathway; interleukin-12 signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); Charcot-Marie-Tooth disease type 2B (ortholog); FOUND IN alveolar lamellar body (ortholog); cytosol (ortholog); endosome membrane (ortholog) NW_004955429 15103792 15167498 - 102021694 AGCD01028794;AGCD01028795;AGCD01028796;GBBH01004537;XM_013515507 XP_013370961 MODEL 8759388 protein-coding Rel REL proto-oncogene, NF-kB subunit ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of gene expression (ortholog); negative regulation of interferon-beta production (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN nuclear factor kappa B signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); atrophic gastritis (ortholog); breast cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955424 22909035 22939651 - 102027422 AGCD01024993;AGCD01024994;GBBH01182330;XM_005385753;XM_013514714 XP_005385810;XP_013370168 MODEL 9039903 protein-coding Tomm6 translocase of outer mitochondrial membrane 6 PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; presequence pathway of mitochondrial protein import; FOUND IN mitochondrion (ortholog) NW_004955437 8183219 8184602 + 102015762 AGCD01034480;GBCQ01000051;XM_005389697 XP_005389754 MODEL 9003733 pseudo LOC102003685 39S ribosomal protein L22, mitochondrial pseudogene NW_004955520 2732442 2737379 + 102003685 AGCD01068082 MODEL 8855148 protein-coding Elovl7 ELOVL fatty acid elongase 7 ENCODES a protein that exhibits fatty acid elongase activity (ortholog); INVOLVED IN fatty acid elongation, polyunsaturated fatty acid (ortholog); fatty acid elongation, saturated fatty acid (ortholog); very long-chain fatty acid biosynthetic process (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955446 7732291 7758842 + 102005647 AGCD01040128;AGCD01040129;GBDF01215158;XM_013518450;XM_013518451 XP_013373904;XP_013373905 MODEL 8879030 protein-coding Parp4 poly(ADP-ribose) polymerase family member 4 ENCODES a protein that exhibits enzyme binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN inflammatory response (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Colonic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitotic spindle (ortholog) NW_004955425 20957032 21047971 + 102023718 AGCD01025773;AGCD01025774;AGCD01025775;AGCD01025776;AGCD01025777;AGCD01025778;AGCD01025779;AGCD01025780;AGCD01025781;GBBH01118618;GBDK01069664;XM_013514867 XP_013370321 MODEL 8934610 protein-coding Snrnp25 small nuclear ribonucleoprotein U11/U12 subunit 25 FOUND IN nucleoplasm (ortholog); nucleus (ortholog); spliceosomal complex (ortholog) NW_004955442 17098487 17101497 - 102009889 AGCD01037937;GBDF01163382;XM_005391683 XP_005391740 MODEL 8949682 pseudo LOC102023365 probable U3 small nucleolar RNA-associated protein 11 pseudogene NW_004955486 1392411 1393168 + 102023365 AGCD01058949 MODEL 8796312 protein-coding LOC102017554 stromelysin-1 NW_004955412 6019457 6027604 - 102017554 AGCD01012664;GBDJ01341055;XM_005377987 XP_005378044 MODEL 9043215 protein-coding Pudp pseudouridine 5'-phosphatase ENCODES a protein that exhibits pseudouridine 5'-phosphatase activity (ortholog) NW_004955499 5110297 5181487 - 102017474 AGCD01063508;AGCD01063509;GBDI01066523;XM_005406540 XP_005406597 MODEL 8950958 protein-coding LOC102019112 olfactory receptor 11H12-like NW_004955550 163342 164301 - 102019112 AGCD01072485;XM_013508545 XP_013363999 MODEL 39131404 protein-coding SDC1 syndecan 1 8730504 protein-coding LOC102026172 vomeronasal type-1 receptor 1-like NW_004955584 608520 613650 - 102026172 AGCD01075950;XM_005414413 XP_005414470 MODEL 8881492 protein-coding Slx4 SLX4 structure-specific endonuclease subunit ENCODES a protein that exhibits enzyme activator activity (ortholog); INVOLVED IN DNA double-strand break processing involved in repair via single-strand annealing (ortholog); DNA repair (ortholog); double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); Fanconi anemia (ortholog); FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); ERCC4-ERCC1 complex (ortholog) NW_004955442 13765660 13792106 + 102020491 AGCD01037787;AGCD01037788;GBCB01011086;XM_005391326;XM_005391327;XM_005391328;XM_005391329;XM_005391330;XM_005391331 XP_005391383;XP_005391384;XP_005391385;XP_005391386;XP_005391387;XP_005391388 MODEL 8915890 pseudo LOC102028529 solute carrier family 25 member 36 pseudogene NW_004955415 22572212 22573304 - 102028529 AGCD01016540 MODEL 8818506 protein-coding LOC102028880 cytochrome P450 2C5-like NW_004955507 1348115 1370194 + 102028880 AGCD01065547;AGCD01065548;AGCD01065549;AGCD01065550;AGCD01065551;AGCD01065552;GBDI01308866;GBDK01216134;XM_013506233 XP_013361687 MODEL 8846327 protein-coding LOC102006523 uncharacterized LOC102006523 NW_004955602 502456 576189 - 102006523 AGCD01076789;AGCD01076790;AGCD01076791;AGCD01076792;AGCD01076793;AGCD01076794;AGCD01076795;AGCD01076796;AGCD01076797;AGCD01076798;AGCD01076799;XM_013510077 XP_013365531 MODEL 8707162 protein-coding Thap4 THAP domain containing 4 ENCODES a protein that exhibits heme binding (ortholog); identical protein binding (ortholog); nitric oxide binding (ortholog); INVOLVED IN cellular response to reactive nitrogen species (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955542 192888 217985 + 102006957 AGCD01071461;AGCD01071462;AGCD01071463;AGCD01071464;GBBH01061509;GBDF01047758;XM_013508087 XP_013363541 MODEL 9066264 pseudo LOC102015648 cytochrome b-c1 complex subunit 7 pseudogene NW_004955500 6288689 6290469 - 102015648 AGCD01063875;XM_005406608 MODEL 10268153 ncrna LOC106148162 uncharacterized LOC106148162 NW_004955416 28755778 28775640 - 106148162 AGCD01017637;GBDF01076285;XR_001233345;XR_001233346 MODEL 8896877 protein-coding Plac8 placenta associated 8 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); defense response to bacterium (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH Chlamydiaceae Infections (ortholog); Escherichia Coli Infections (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955474 6518459 6533251 + 102030066 AGCD01054481;GBBH01004306;XM_005401386 XP_005401443 MODEL 8978894 protein-coding LOC102025805 uncharacterized LOC102025805 NW_004955420 14253185 14264477 + 102025805 AGCD01020935;GBDJ01300726;XM_013513550 XP_013369004 MODEL 8878731 protein-coding LOC102010672 uncharacterized LOC102010672 NW_004955456 8615945 8618802 + 102010672 AGCD01046495;AGCD01046496;GBDJ01224884;XM_013520516 XP_013375970 MODEL 9028138 protein-coding Pde1b phosphodiesterase 1B ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); 3',5'-cyclic-nucleotide phosphodiesterase activity (ortholog); INVOLVED IN cellular response to granulocyte macrophage colony-stimulating factor stimulus (ortholog); cellular response to macrophage colony-stimulating factor stimulus (ortholog); locomotory behavior (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH cerebellar ataxia (ortholog); learning disability (ortholog); Parkinsonism (ortholog); FOUND IN cytosol (ortholog); neuronal cell body (ortholog) NW_004955458 1791090 1819261 + 102009692 AGCD01047205;GBDJ01353750;XM_005397232;XM_005397233;XM_005397234 XP_005397289;XP_005397290;XP_005397291 MODEL 8991588 protein-coding Prox1 prospero homeobox 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA binding domain binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN acinar cell differentiation (ortholog); aorta smooth muscle tissue morphogenesis (ortholog); atrial cardiac muscle tissue morphogenesis (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); Neoplasm Metastasis (ortholog); obesity (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955406 3715140 3770019 - 102012922 AGCD01005674;GBCQ01174906;XM_005374720;XM_005374721;XM_005374722;XM_005374723;XM_013519987 XP_005374777;XP_005374778;XP_005374779;XP_005374780;XP_013375441 MODEL 8855320 pseudo LOC102009492 RNA-binding protein with serine-rich domain 1 pseudogene NW_004955415 3192634 3193526 - 102009492 AGCD01015927 MODEL 9062865 protein-coding Ribc2 RIB43A domain with coiled-coils 2 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); sperm flagellum (ortholog) NW_004955413 29765119 29781206 + 102004155 AGCD01014594;GBCE01075814;XM_005379489 XP_005379546 MODEL 10226362 protein-coding LOC106149910 uncharacterized LOC106149910 NW_004955457 10351685 10352493 - 106149910 AGCD01046954;GBCQ01113664;XM_013520666 XP_013376120 MODEL 8801279 protein-coding Slamf9 SLAM family member 9 INVOLVED IN defense response to bacterium (ortholog); plasmacytoid dendritic cell chemotaxis (ortholog); plasmacytoid dendritic cell differentiation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cell surface (ortholog) NW_004955468 11745694 11771376 - 102012304 AGCD01052137;AGCD01052138;AGCD01052139;GBDJ01323839;XM_013522438 XP_013377892 MODEL 9047029 protein-coding Ppp4r1 protein phosphatase 4 regulatory subunit 1 FOUND IN protein phosphatase 4 complex (ortholog) NW_004955402 2529335 2568621 + 102023309 AGCD01000083;AGCD01000084;GBCE01096633;GBDK01143623;XM_013515377 XP_013370831 MODEL 8773874 pseudo LOC102005444 zinc finger protein 649-like NW_004955408 34633994 34635786 + 102005444 AGCD01008914 MODEL 8929823 pseudo LOC102030317 60S ribosomal protein L21 pseudogene NW_004955420 2635689 2636168 + 102030317 AGCD01020604;XM_005383011 MODEL 8965912 protein-coding LOC102008396 apolipoprotein L6-like NW_004955413 21987513 22022979 + 102008396 AGCD01014278;AGCD01014279;GBDF01146804;XM_013511275 XP_013366729 MODEL 8773420 pseudo LOC102006876 heterogeneous nuclear ribonucleoprotein D-like pseudogene NW_004955407 20847561 20859445 - 102006876 AGCD01007345 MODEL 8740002 pseudo LOC102010284 general transcription factor 3C polypeptide 6 pseudogene NW_004955500 4949060 4951908 + 102010284 AGCD01063817 MODEL 8959917 protein-coding Pou2f3 POU class 2 homeobox 3 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN cell differentiation (ortholog); epidermis development (ortholog); keratinocyte differentiation (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955412 21261389 21339602 + 102010884 AGCD01013020;AGCD01013021;GBCE01142334;XM_005378347;XM_013511247 XP_005378404;XP_013366701 MODEL 8957846 protein-coding LOC102006524 PRAME family member 9/15-like NW_004955608 205572 208767 - 102006524 AGCD01077013;AGCD01077014;GBDF01281184;XM_013510116 XP_013365570 MODEL 8739352 protein-coding Wapl WAPL cohesin release factor ENCODES a protein that exhibits ATP-dependent protein-DNA unloader activity (ortholog); INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); chromatin looping (ortholog); homologous chromosome pairing at meiosis (ortholog); ASSOCIATED WITH clubfoot (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955510 5596622 5674221 - 102007681 AGCD01066283;AGCD01066284;AGCD01066285;GBDI01171890;XM_005407895;XM_013506324 XP_005407952;XP_013361778 MODEL 8979168 protein-coding Tomm7 translocase of outer mitochondrial membrane 7 INVOLVED IN positive regulation of protein localization to mitochondrion (ortholog); positive regulation of type 2 mitophagy (ortholog); regulation of protein stability (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; mitochondrial autophagy pathway; ASSOCIATED WITH GARG-MISHRA PROGEROID SYNDROME (ortholog); FOUND IN mitochondrial outer membrane translocase complex (ortholog); mitochondrion (ortholog) NW_004955410 25157860 25166898 - 102009473 AGCD01011144;GBCB01006439;XM_005377383 XP_005377440 MODEL 39133556 snorna U3 Small nucleolar RNA U3 9018778 pseudo LOC102012675 uncharacterized LOC102012675 NW_004955429 6718846 6761193 + 102012675 AGCD01028560;AGCD01028561;AGCD01028562;AGCD01028563;AGCD01028564 MODEL 150537118 snorna SNORA23 small nucleolar RNA, H/ACA box 23 9052014 pseudo LOC102011036 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L pseudogene NW_004955434 9417014 9421344 + 102011036 AGCD01032299;AGCD01032300 MODEL 8959594 protein-coding Lhb luteinizing hormone subunit beta INVOLVED IN luteinizing hormone signaling pathway (ortholog); PARTICIPATES IN luteinizing hormone signaling pathway; ASSOCIATED WITH alcohol use disorder (ortholog); Bradycardia (ortholog); Cocaine-Related Disorders (ortholog); FOUND IN cytoplasm (ortholog) NW_004955559 1656106 1657192 + 102025951 AGCD01073658;XM_005415296 XP_005415353 MODEL 8996456 protein-coding Snrnp27 small nuclear ribonucleoprotein U4/U6.U5 subunit 27 ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN precatalytic spliceosome (ortholog); spliceosomal complex (ortholog); U4/U6 x U5 tri-snRNP complex (ortholog) NW_004955424 15243190 15251831 - 102013100 AGCD01024700;GBDF01118203;XM_005385637;XM_013514749;XM_013514750;XR_001234249;XR_001234250 XP_005385694;XP_013370203;XP_013370204 MODEL 8922939 protein-coding LOC102017558 inactive serine/threonine-protein kinase TEX14-like NW_004955468 2755885 2769051 + 102017558 AGCD01051835;AGCD01051836;GBDF01121864;XM_013522507;XM_013522508;XM_013522509;XM_013522510;XM_013522511;XM_013522512;XM_013522513;XM_013522515;XR_001236935 XP_013377961;XP_013377962;XP_013377963;XP_013377964;XP_013377965;XP_013377966;XP_013377967;XP_013377969 MODEL 8913595 pseudo LOC102018717 cullin-2 pseudogene NW_004955472 6363888 6365161 - 102018717 AGCD01053598 MODEL 8896712 pseudo LOC102021640 L-lactate dehydrogenase B chain pseudogene NW_004955464 13204250 13218462 + 102021640 AGCD01050262;AGCD01050263;AGCD01050264 MODEL 8881627 protein-coding LOC102027182 solute carrier family 7 member 13-like NW_004955417 2901641 2937371 + 102027182 AGCD01017896;AGCD01017897;GBCQ01002365;XM_005381728;XM_005381729;XM_005381730;XM_005381732;XM_013512794;XM_013512795 XP_005381785;XP_005381786;XP_005381787;XP_005381789;XP_013368248;XP_013368249 MODEL 8915204 protein-coding LOC102028530 uncharacterized LOC102028530 NW_004955476 10669921 10686568 + 102028530 AGCD01055426;AGCD01055427;GBDF01040659;XM_013502984;XM_013502985;XR_263640;XR_263641 XP_013358438;XP_013358439 MODEL 8721822 protein-coding Trim11 tripartite motif containing 11 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein-macromolecule adaptor activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); host-mediated suppression of symbiont invasion (ortholog); innate immune response (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955581 114750 123410 + 102013126 AGCD01075657;GBDF01080297;XM_005414233;XM_005414234 XP_005414290;XP_005414291 MODEL 8825251 protein-coding Parp6 poly(ADP-ribose) polymerase family member 6 ENCODES a protein that exhibits NAD+-protein-aspartate ADP-ribosyltransferase activity (ortholog); NAD+-protein-cysteine ADP-ribosyltransferase activity (ortholog); INVOLVED IN positive regulation of dendrite morphogenesis (ortholog); protein auto-ADP-ribosylation (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955450 4863713 4900509 + 102030258 AGCD01042483;AGCD01042484;AGCD01042485;GBBH01213862;XM_005393612;XM_013518934;XM_013518935;XM_013518936;XM_013518937;XM_013518938;XM_013518939;XM_013518940;XM_013518941;XM_013518942;XM_013518943;XR_001235873 XP_005393669;XP_013374388;XP_013374389;XP_013374390;XP_013374391;XP_013374392;XP_013374393;XP_013374394;XP_013374395;XP_013374396;XP_013374397 MODEL 8975138 protein-coding Ppp4r2 protein phosphatase 4 regulatory subunit 2 ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); regulation of double-strand break repair (ortholog); regulation of double-strand break repair via homologous recombination (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955421 15165836 15220509 - 102027194 AGCD01021969;AGCD01021970;GBCQ01094246;XM_005383766;XM_013513753 XP_005383823;XP_013369207 MODEL 8830561 protein-coding Brd4 bromodomain containing 4 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); chromatin remodeling (ortholog); chromosome segregation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); alopecia (ortholog); autosomal dominant polycystic kidney disease (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); condensed nuclear chromosome (ortholog) NW_004955495 7959033 7989216 + 102009518 AGCD01062173;GBDF01154291;XM_013505125 XP_013360579 MODEL 8765802 protein-coding Slbp stem-loop histone mRNA binding protein ENCODES a protein that exhibits histone pre-mRNA stem-loop binding (ortholog); identical protein binding (ortholog); mRNA binding (ortholog); INVOLVED IN cap-dependent translational initiation (ortholog); mRNA 3'-end processing by stem-loop binding and cleavage (ortholog); mRNA transport (ortholog); ASSOCIATED WITH coloboma (ortholog); optic atrophy (ortholog); Retinal Dysplasia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); histone mRNA stem-loop binding complex (ortholog) NW_004955514 954489 968670 - 102016626 AGCD01067028;GBDF01000480;XM_005408703;XM_013506819;XM_013506820;XM_013506821 XP_005408760;XP_013362273;XP_013362274;XP_013362275 MODEL 8808006 protein-coding LOC102006881 uncharacterized protein C2orf78-like NW_004955409 19070835 19072914 - 102006881 AGCD01009855;AGCD01009856;GBDF01127547;GBDF01127548;XM_005377161 XP_005377218 MODEL 8991575 protein-coding Thap5 THAP domain containing 5 ENCODES a protein that exhibits protease binding (ortholog); INVOLVED IN negative regulation of cell cycle (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955410 12808700 12814915 - 102012838 AGCD01010872;GBDF01221249;XM_005377310 XP_005377367 MODEL 8774326 protein-coding Rela RELA proto-oncogene, NF-kB subunit ENCODES a protein that exhibits actinin binding (ortholog); ankyrin repeat binding (ortholog); chromatin binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); antiviral innate immune response (ortholog); canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN ceramide signaling pathway; interleukin-1 signaling pathway; interleukin-12 signaling pathway; ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); adenocarcinoma (ortholog); alcohol dependence (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955422 19602930 19612263 + 102030643 AGCD01023023;AGCD01023024;GBCE01054806;GBDK01101045;XM_005384468 XP_005384525 MODEL 8814043 protein-coding LOC102027868 prolactin-inducible protein homolog NW_004955494 476651 480594 - 102027868 AGCD01061378;GBDF01254244;XM_005405373 XP_005405430 MODEL 10112753 ncrna LOC106147070 uncharacterized LOC106147070 NW_004955515 4129498 4133202 + 106147070 AGCD01067316;GBDJ01059081;XR_001231787;XR_001231788 MODEL 8769031 pseudo LOC102015650 ADP-ribose pyrophosphatase, mitochondrial pseudogene NW_004955425 2036996 2038353 + 102015650 AGCD01025251 MODEL 10170186 protein-coding Rasl11a RAS like family 11 member A INVOLVED IN positive regulation of transcription by RNA polymerase I (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); endometriosis (ortholog); FOUND IN nucleolus (ortholog) NW_004955497 6695354 6697425 + 106146843 AGCD01062645;GBDF01251613;GBDJ01086656;XM_013505509 XP_013360963 MODEL 8892359 protein-coding Elp1 elongator acetyltransferase complex subunit 1 ENCODES a protein that exhibits ATP binding (ortholog); protein kinase activity (ortholog); INVOLVED IN I-kappaB phosphorylation (ortholog); tRNA wobble uridine modification (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Charcot-Marie-Tooth disease (ortholog); familial dysautonomia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); elongator holoenzyme complex (ortholog) NW_004955419 18035197 18097681 + 102020672 AGCD01020168;GBDF01196206;XM_005382757;XM_013513174 XP_005382814;XP_013368628 MODEL 9049183 ncrna LOC102011435 uncharacterized LOC102011435 NW_004955414 23356883 23359067 - 102011435 AGCD01015497;XR_260190 MODEL 8996746 protein-coding Psmd14 proteasome 26S subunit, non-ATPase 14 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); endopeptidase activator activity (ortholog); K63-linked deubiquitinase activity (ortholog); INVOLVED IN double-strand break repair via homologous recombination (ortholog); double-strand break repair via nonhomologous end joining (ortholog); protein K63-linked deubiquitination (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH alcohol-associated liver disease (ortholog); autistic disorder (ortholog); Disease Progression (ortholog); FOUND IN cytosolic proteasome complex (ortholog); nucleoplasm (ortholog); proteasome accessory complex (ortholog) NW_004955449 12306026 12400908 - 102023649 AGCD01042111;AGCD01042112;GBDF01082613;XM_005393338;XM_005393340 XP_005393395;XP_005393397 MODEL 8999811 pseudo LOC102023368 coiled-coil domain-containing protein 93 pseudogene NW_004955488 3782918 3784816 + 102023368 AGCD01059584;XR_263998 MODEL 39133558 snorna U3 Small nucleolar RNA U3 8948157 protein-coding Sdc1 syndecan 1 ENCODES a protein that exhibits cargo receptor activity (ortholog); identical protein binding (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); myoblast development (ortholog); positive regulation of exosomal secretion (ortholog); PARTICIPATES IN altered melanocortin system pathway; melanocortin system pathway; obesity pathway; ASSOCIATED WITH COVID-19 (ortholog); familial hyperlipidemia (ortholog); Hodgkin's lymphoma (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular region (ortholog) NW_004955469 2762696 2773697 - 102012750 AGCD01052281;GBDI01076441;XM_013522561 XP_013378015 MODEL 8891858 protein-coding Rtl4 retrotransposon Gag like 4 INVOLVED IN cognition (ortholog); norepinephrine metabolic process (ortholog) NW_004955490 3403958 3497789 - 102029300 AGCD01060166;AGCD01060167;AGCD01060168;GBDF01086720;XM_013504514 XP_013359968 MODEL 626189146 snorna SNORA24 small nucleolar RNA, H/ACA box 24 8832675 protein-coding LOC102026179 keratin-associated protein 9-2-like NW_004955451 15654523 15662965 + 102026179 AGCD01043630;AGCD01043631;GBBH01047683;XM_013519181;XM_013519182 XP_013374635;XP_013374636 MODEL 8728857 protein-coding Slc44a2 solute carrier family 44 member 2 (CTL2 blood group) ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); ethanolamine transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog); ethanolamine transport (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog); plasma membrane (ortholog) NW_004955495 1780766 1804944 + 102008235 AGCD01061730;AGCD01061731;GBDK01014784;XM_005405608;XM_005405609 XP_005405665;XP_005405666 MODEL 9033471 protein-coding Slx4ip SLX4 interacting protein ASSOCIATED WITH congenital myasthenic syndrome 18 (ortholog); developmental and epileptic encephalopathy 12 (ortholog) NW_004955415 20316664 20478786 + 102025455 AGCD01016487;AGCD01016488;AGCD01016489;GBDF01188952;XM_005380876;XM_005380877;XM_013512259;XM_013512260 XP_005380933;XP_005380934;XP_013367713;XP_013367714 MODEL 9048358 protein-coding LOC102003687 vomeronasal type-2 receptor 116-like NW_004955524 1903056 1933183 + 102003687 AGCD01068783;AGCD01068784;AGCD01068785;AGCD01068786;AGCD01068787;GBDF01097477;XM_013507191 XP_013362645 MODEL 8773591 protein-coding LOC102018719 phospholipid scramblase 2-like NW_004955474 10991013 11067397 + 102018719 AGCD01054605;AGCD01054606;AGCD01054607;AGCD01054608;GBDF01044008;XM_005401433;XM_005401434;XM_005401435;XM_005401436 XP_005401490;XP_005401491;XP_005401492;XP_005401493 MODEL 8825954 protein-coding Rab7b RAB7B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); INVOLVED IN cellular response to type II interferon (ortholog); late endosome to Golgi transport (ortholog); negative regulation of toll-like receptor 4 signaling pathway (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); osteoporosis (ortholog); FOUND IN Golgi apparatus (ortholog); late endosome (ortholog); lysosome (ortholog) NW_004955406 41615302 41638157 - 102015373 AGCD01006688;GBDK01084519;XM_005375379;XM_005375380 XP_005375436;XP_005375437 MODEL 8863448 protein-coding Serpina12 serpin family A member 12 ENCODES a protein that exhibits molecular function inhibitor activity (ortholog); INVOLVED IN glucose metabolic process (ortholog); negative regulation of gluconeogenesis (ortholog); negative regulation of lipid biosynthetic process (ortholog); ASSOCIATED WITH mal de Meleda (ortholog); Metabolic Syndrome (ortholog); obesity (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog) NW_004955438 17826596 17849341 + 102020610 AGCD01035454;AGCD01035455;GBDF01057280;XM_005390390;XM_013517145 XP_005390447;XP_013372599 MODEL 9060342 protein-coding Pou3f2 POU class 3 homeobox 2 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN astrocyte development (ortholog); cerebral cortex radially oriented cell migration (ortholog); epidermis development (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955411 24714899 24722048 + 102021860 AGCD01012136;AGCD01012137;XM_005377797 XP_005377854 MODEL 8963970 protein-coding LOC102006527 DNA dC->dU-editing enzyme APOBEC-3C-like NW_004957268 331 1246 + 102006527 AGCD01080664;GBCC01040991;GBDJ01005875;XM_005415226 XP_005415283 MODEL 8997987 ncrna LOC102010678 uncharacterized LOC102010678 NW_004955410 29688647 29706211 + 102010678 AGCD01011293;GBDF01277999;XR_259884 MODEL 9043789 pseudo LOC102009499 60S ribosomal protein L17 pseudogene NW_004955417 3418704 3419219 - 102009499 AGCD01017914 MODEL 8749578 pseudo LOC102006883 regulator of nonsense transcripts 2 pseudogene NW_004955463 5813626 5816741 + 102006883 AGCD01049644 MODEL 8741608 protein-coding Tomm70 translocase of outer mitochondrial membrane 70 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN activation of innate immune response (ortholog); cellular response to virus (ortholog); negative regulation of cell growth involved in cardiac muscle cell development (ortholog); PARTICIPATES IN alpha-helical insertion pathway of mitochondrial protein import; beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; ASSOCIATED WITH Cardiomegaly (ortholog); congestive heart failure (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955427 1874277 1908245 - 102014589 AGCD01026884;GBCE01075536;XM_013515046 XP_013370500 MODEL 9014160 protein-coding Pde1c phosphodiesterase 1C ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); 3',5'-cyclic-nucleotide phosphodiesterase activity (ortholog); INVOLVED IN negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); negative regulation of renin secretion into blood stream (ortholog); response to calcium ion (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 74 (ortholog); prostate cancer (ortholog); FOUND IN cilium (ortholog); lysosome (ortholog); neuronal cell body (ortholog) NW_004955410 32790720 33257760 - 102028835 AGCD01011351;AGCD01011352;AGCD01011353;AGCD01011354;AGCD01011355;AGCD01011356;AGCD01011357;AGCD01011358;AGCD01011359;GBBH01160601;GBBH01201304;XM_013510635 XP_013366089 MODEL 8843339 protein-coding LOC102019114 tubulin alpha-3 chain-like NW_004955442 19296034 19308163 + 102019114 AGCD01038049;AGCD01038050;AGCD01038051;GBDF01010845;GBDK01361085;XM_013517984 XP_013373438 MODEL 9056084 protein-coding Relb RELB proto-oncogene, NF-kB subunit ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); cellular response to osmotic stress (ortholog); circadian regulation of gene expression (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); atopic dermatitis (ortholog); breast cancer (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); cytosol (ortholog) NW_004955555 2060533 2086229 + 102030482 AGCD01073127;AGCD01073128;AGCD01073129;GBCB01060771;GBDK01139724;XM_005412484;XM_013508745 XP_005412541;XP_013364199 MODEL 8963114 pseudo LOC102030320 protein lin-9 homolog NW_004955486 8466892 8482747 + 102030320 AGCD01059151 MODEL 8707196 pseudo LOC102008404 RNA-binding protein with serine-rich domain 1 pseudogene NW_004955415 22507523 22528364 - 102008404 AGCD01016538;AGCD01016539 MODEL 9033286 protein-coding LOC102017561 protein FAM205CP-like NW_004955472 1277942 1292106 + 102017561 AGCD01053383;AGCD01053384;AGCD01053385;GBDF01045749;XM_005401036 XP_005401093 MODEL 10178934 ncrna LOC106148163 uncharacterized LOC106148163 NW_004955416 7314298 7327507 - 106148163 AGCD01016973;GBDK01345853;XR_001233347;XR_001233348 MODEL 8810622 protein-coding Snrnp35 small nuclear ribonucleoprotein U11/U12 subunit 35 FOUND IN nucleolus (ortholog); nucleus (ortholog); spliceosomal complex (ortholog) NW_004955482 5457159 5461694 - 102018093 AGCD01057330;AGCD01057331;GBCB01097803;GBDJ01187224;XM_005403037 XP_005403094 MODEL 9005158 ncrna LOC102027183 uncharacterized LOC102027183 NW_004955480 1028040 1061650 - 102027183 AGCD01056590;XR_263741 MODEL 8812891 protein-coding Plac8l1 PLAC8 like 1 NW_004955415 7990558 8024998 + 102018489 AGCD01016060;AGCD01016061;AGCD01016062;AGCD01016063;GBDF01304882;XM_005380681;XM_005380682 XP_005380738;XP_005380739 MODEL 8902002 pseudo LOC102021641 cytoskeleton-associated protein 2 pseudogene NW_004955411 29344641 29345901 - 102021641 AGCD01012235 MODEL 9040076 pseudo LOC102025807 eukaryotic translation initiation factor 3 subunit F-like NW_004955421 19273671 19343931 + 102025807 AGCD01022070;AGCD01022071 MODEL 8827586 pseudo LOC102024389 laccase domain-containing protein 1 pseudogene NW_004955444 15864562 15865847 - 102024389 AGCD01039157 MODEL 8981889 protein-coding Prox2 prospero homeobox 2 NW_004955523 697475 708675 + 102016410 AGCD01068476;GBDF01279087;XM_005409386 XP_005409443 MODEL 8715794 protein-coding Slc10a1 solute carrier family 10 member 1 ENCODES a protein that exhibits bile acid transmembrane transporter activity (ortholog); bile acid:sodium symporter activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); cellular response to xenobiotic stimulus (ortholog); response to estrogen (ortholog); ASSOCIATED WITH alcoholic hepatitis (ortholog); Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); FOUND IN basolateral plasma membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955466 597081 609254 + 102026303 AGCD01050667;GBCB01029096;XM_005399028 XP_005399085 MODEL 8996298 protein-coding Ric1 RIC1 partner of RAB6A GEF complex ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN cranial skeletal system development (ortholog); negative regulation of protein catabolic process (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH CATIFA Syndrome (ortholog); epilepsy (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); protein-containing complex (ortholog) NW_004955434 9675654 9770174 + 102004634 AGCD01032308;AGCD01032309;GBDK01079504;XM_005388664;XM_013516307 XP_005388721;XP_013371761 MODEL 8793401 protein-coding Ppp4r3a protein phosphatase 4 regulatory subunit 3A INVOLVED IN positive regulation of gluconeogenesis (ortholog); protein dephosphorylation (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955438 13731900 13769189 - 102019325 AGCD01035303;AGCD01035304;GBDI01127180;XM_005390304;XM_005390305 XP_005390361;XP_005390362 MODEL 9032373 ncrna LOC102011037 uncharacterized LOC102011037 NW_004955435 7325862 7336787 - 102011037 AGCD01032952;AGCD01032953;AGCD01032954;GBDF01178841;XR_261667 MODEL 8820249 ncrna LOC102006884 uncharacterized LOC102006884 NW_004955464 10682579 10683956 - 102006884 AGCD01050127;GBCE01067008;XR_001236703;XR_001236704 MODEL 8765624 protein-coding Elp2 elongator acetyltransferase complex subunit 2 ENCODES a protein that exhibits protein kinase binding (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN regulation of receptor signaling pathway via JAK-STAT (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive intellectual developmental disorder 48 (ortholog); autosomal recessive intellectual developmental disorder 58 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); elongator holoenzyme complex (ortholog) NW_004955402 22698817 22742691 + 102009129 AGCD01000609;AGCD01000610;GBDF01125422;XM_005372807;XM_005372808 XP_005372864;XP_005372865 MODEL 8734870 protein-coding Sdc2 syndecan 2 ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN dendrite morphogenesis (ortholog); positive regulation of cell adhesion (ortholog); positive regulation of epithelial cell migration (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; syndecan signaling pathway; ASSOCIATED WITH cleft lip (ortholog); cleft palate (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN glutamatergic synapse (ortholog); neuronal cell body (ortholog); plasma membrane (ortholog) NW_004955417 12462354 12563374 + 102006129 AGCD01018162;GBCQ01035364;XM_005381834;XM_005381835 XP_005381891;XP_005381892 MODEL 8862525 pseudo LOC102019115 sodium-coupled neutral amino acid transporter 5 pseudogene NW_004955559 1182193 1184912 + 102019115 AGCD01073634 MODEL 9008967 protein-coding Serpina3 serpin family A member 3 ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Arterial Occlusive Diseases (ortholog); Cerebral Hemorrhage (ortholog); FOUND IN extracellular region (ortholog) NW_004955438 17758763 17766113 - 102020287 AGCD01035451;GBCE01004471;XM_005390389 XP_005390446 MODEL 9013475 protein-coding LOC102017562 olfactory receptor 502 NW_004955414 23671645 23672589 - 102017562 AGCD01015514;XM_013511762 XP_013367216 MODEL 10176920 protein-coding LOC106147071 spermatogenesis-associated protein 31A6-like NW_004955515 3737183 3738035 + 106147071 AGCD01067302;GBBH01073597;XM_013506863 XP_013362317 MODEL 9049480 protein-coding LOC102027870 uncharacterized LOC102027870 NW_004955494 991828 997553 - 102027870 AGCD01061390;GBCE01045897;XM_005405526 XP_005405583 MODEL 8930659 pseudo LOC102015655 olfactory receptor 10AG1-like NW_004955511 5021380 5022347 - 102015655 AGCD01066542 MODEL 8877860 protein-coding Brd7 bromodomain containing 7 ENCODES a protein that exhibits histone binding (ortholog); histone H3K14ac reader activity (ortholog); p53 binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of G1/S transition of mitotic cell cycle (ortholog); regulation of mitotic cell cycle (ortholog); PARTICIPATES IN histone modification pathway; SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); colorectal carcinoma (ortholog); glioblastoma (ortholog); FOUND IN chromosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955433 8425976 8462431 - 102008761 AGCD01031593;AGCD01031594;GBBH01166493;GBCB01024456;XM_013516217 XP_013371671 MODEL 8794739 protein-coding Parp8 poly(ADP-ribose) polymerase family member 8 ENCODES a protein that exhibits NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); NAD+-protein-cysteine ADP-ribosyltransferase activity (ortholog); INVOLVED IN protein auto-ADP-ribosylation (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation NW_004955446 16332614 16516719 - 102014719 AGCD01040320;AGCD01040321;AGCD01040322;AGCD01040323;AGCD01040324;AGCD01040325;GBCE01176200;GBDJ01387923;XM_013518449 XP_013373903 MODEL 8737853 protein-coding LOC102028882 olfactory receptor 10AG1-like NW_004955511 907666 908631 - 102028882 AGCD01066346;XM_005407951 XP_005408008 MODEL 9065396 pseudo LOC102024392 keratin, type I cytoskeletal 18 pseudogene NW_004955445 5900650 5901318 - 102024392 AGCD01039475 MODEL 8892522 protein-coding Rab8a RAB8A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN axonogenesis (ortholog); cellular response to insulin stimulus (ortholog); cilium assembly (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH rheumatoid arthritis (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); ciliary base (ortholog) NW_004955524 1403811 1416005 - 102023187 AGCD01068749;GBBH01023807;XM_005409485 XP_005409542 MODEL 9040254 protein-coding LOC102009503 olfactory receptor 2V2 NW_004955483 151790 152737 + 102009503 AGCD01057601;XM_005403270 XP_005403327 MODEL 8714655 protein-coding LOC102011437 phospholipid-transporting ATPase FetA-like NW_004955472 770636 868645 - 102011437 AGCD01053355;AGCD01053356;AGCD01053357;AGCD01053358;AGCD01053359;AGCD01053360;AGCD01053361;AGCD01053362;AGCD01053363;GBDK01126213;XM_005401014;XM_005401015;XM_013523039;XM_013523040;XM_013523041;XM_013523042;XM_013523043 XP_005401071;XP_005401072;XP_013378493;XP_013378494;XP_013378495;XP_013378496;XP_013378497 MODEL 8820968 protein-coding Proz protein Z, vitamin K dependent plasma glycoprotein INVOLVED IN blood coagulation (ortholog); PARTICIPATES IN coagulation cascade pathway; ASSOCIATED WITH Behcet's disease (ortholog); blood coagulation disease (ortholog); brain ischemia (ortholog); FOUND IN extracellular region (ortholog) NW_004955404 647217 657256 - 102006862 AGCD01003206;XM_005373954;XM_013515581;XM_013515592 XP_005374011;XP_013371035;XP_013371046 MODEL 39133561 snorna U3 Small nucleolar RNA U3 8982394 protein-coding LOC102010292 olfactory receptor 1019 NW_004955511 1765100 1766038 + 102010292 AGCD01066379;XM_005407976 XP_005408033 MODEL 41410898 snorna SNORA28 small nucleolar RNA, H/ACA box 28 8975936 pseudo LOC102030327 olfactory receptor 4C3-like NW_004955422 221374 223647 - 102030327 AGCD01022401 MODEL 8950332 protein-coding Pde2a phosphodiesterase 2A ENCODES a protein that exhibits 3',5'-cGMP-stimulated cyclic-nucleotide phosphodiesterase activity (ortholog); 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); aorta development (ortholog); cAMP catabolic process (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Breast Neoplasms (ortholog); cardiomyopathy (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955414 18765591 18826717 + 102023685 AGCD01015287;GBCQ01072216;XM_013512066 XP_013367520 MODEL 8904572 protein-coding LOC102011040 olfactory receptor 56-like NW_004955530 191959 192906 + 102011040 AGCD01069832;XM_005410119 XP_005410176 MODEL 8746294 protein-coding Slx9 SLX9 ribosome biogenesis factor FOUND IN nucleolus (ortholog) NW_004955407 41812808 41834661 + 102011404 AGCD01007882;AGCD01007883;GBBH01119448;XM_005375907 XP_005375964 MODEL 8748194 ncrna LOC102008409 uncharacterized LOC102008409 NW_004955477 11222230 11223234 + 102008409 AGCD01055725;GBBH01224847;XR_263677 MODEL 8862766 protein-coding Trim13 tripartite motif containing 13 ENCODES a protein that exhibits transcription coactivator activity (ortholog); ubiquitin-like protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); ERAD pathway (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog); perinuclear endoplasmic reticulum (ortholog) NW_004955431 3324331 3395724 + 102028005 AGCD01029962;AGCD01029963;AGCD01029964;GBCE01111270;XM_005387600;XM_013515780 XP_005387657;XP_013371234 MODEL 10351740 protein-coding LOC106149911 translation initiation factor IF-2-like NW_004955457 12733466 12735613 - 106149911 AGCD01047026;GBDK01226244;XM_013520667 XP_013376121 MODEL 8983859 protein-coding Thap6 THAP domain containing 6 FOUND IN microtubule cytoskeleton (ortholog) NW_004955474 1481669 1491904 + 102008937 AGCD01054256;GBDF01081168;XM_005401316 XP_005401373 MODEL 8716919 protein-coding LOC102019119 zinc finger protein 501-like NW_004955569 1687711 1702017 + 102019119 AGCD01074676;AGCD01074677;XM_013509378 XP_013364832 MODEL 8737485 protein-coding Wars1 tryptophanyl-tRNA synthetase 1 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein homodimerization activity (ortholog); protein kinase binding (ortholog); INVOLVED IN intracellular signal transduction (ortholog); regulation of angiogenesis (ortholog); tryptophanyl-tRNA aminoacylation (ortholog); PARTICIPATES IN tryptophan metabolic pathway; ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 9 (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955438 21414878 21445417 - 102006711 AGCD01035542;AGCD01035543;AGCD01035544;GBCE01053817;XM_005390433;XM_005390434;XM_005390436;XM_013517225 XP_005390490;XP_005390491;XP_005390493;XP_013372679 MODEL 8710396 pseudo LOC102005447 rho-associated protein kinase 1-like NW_004955459 1724049 1732649 + 102005447 AGCD01047977 MODEL 8933571 protein-coding Rasl11b RAS like family 11 member B ENCODES a protein that exhibits transforming growth factor beta receptor binding (ortholog); INVOLVED IN negative regulation of transforming growth factor beta receptor signaling pathway (ortholog) NW_004955447 17755277 17758827 - 102010750 AGCD01041134;GBCE01186100;GBDI01325397;XM_013518526 XP_013373980 MODEL 8710746 protein-coding LOC102021642 serpin B9-like NW_004955465 10392685 10403396 - 102021642 AGCD01050508;XM_005398915 XP_005398972 MODEL 8837721 pseudo LOC102023369 amyloid beta A4 precursor protein-binding family B member 2 pseudogene NW_004955490 780174 780721 - 102023369 AGCD01060088 MODEL 8886432 pseudo LOC102010681 WD repeat domain phosphoinositide-interacting protein 2-like NW_004955411 4563483 4584420 + 102010681 AGCD01011581 MODEL 9065365 protein-coding Lhcgr luteinizing hormone/choriogonadotropin receptor ENCODES a protein that exhibits ATPase binding (ortholog); choriogonadotropin hormone binding (ortholog); choriogonadotropin hormone receptor activity (ortholog); INVOLVED IN activation of adenylate cyclase activity (ortholog); adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphas family; luteinizing hormone signaling pathway; peptide and protein hormone signaling pathway; ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); breast cancer (ortholog); disorder of sexual development (ortholog); FOUND IN endosome (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955441 15205883 15263617 - 102023399 AGCD01037244;AGCD01037245;AGCD01037246;GBDJ01116217;XM_005391008;XM_013517564;XM_013517565;XM_013517566;XM_013517567 XP_005391065;XP_013373018;XP_013373019;XP_013373020;XP_013373021 MODEL 8884494 protein-coding LOC102006528 L-gulonolactone oxidase NW_004955403 50132066 50154216 + 102006528 AGCD01002959;GBCE01014649;XM_005373748;XM_005373749;XM_013514239;XM_013514245 XP_005373805;XP_005373806;XP_013369693;XP_013369699 MODEL 8855798 protein-coding Slc10a2 solute carrier family 10 member 2 ENCODES a protein that exhibits bile acid:sodium symporter activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); response to bacterium (ortholog); ASSOCIATED WITH cognitive disorder (ortholog); Diabetes Complications (ortholog); intestinal disease (ortholog); FOUND IN apical plasma membrane (ortholog); microvillus (ortholog); proteasome complex (ortholog) NW_004955404 8122119 8137236 + 102027934 AGCD01003348;XM_005374019 XP_005374076 MODEL 9024911 protein-coding Rtl5 retrotransposon Gag like 5 NW_004955475 11499717 11504438 - 102012191 AGCD01055154;GBDJ01165951;GBDK01005230;XM_005401683 XP_005401740 MODEL 8815616 protein-coding Tonsl tonsoku like, DNA repair protein ENCODES a protein that exhibits histone binding (ortholog); histone reader activity (ortholog); INVOLVED IN double-strand break repair via homologous recombination (ortholog); protein localization to chromatin (ortholog); replication fork processing (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatocellular carcinoma (ortholog); polycystic ovary syndrome (ortholog); FOUND IN chromosome (ortholog); DNA replication factor A complex (ortholog); FACT complex (ortholog) NW_004955454 3054727 3067785 - 102006630 AGCD01045050;GBBH01121727;XM_005395889;XM_005395890;XM_013520284;XM_013520285 XP_005395946;XP_005395947;XP_013375738;XP_013375739 MODEL 8867797 protein-coding LOC102003691 vomeronasal type-2 receptor 116-like NW_004955532 145761 208308 + 102003691 AGCD01070101;AGCD01070102;AGCD01070103;AGCD01070104;AGCD01070105;AGCD01070106;AGCD01070107;AGCD01070108;AGCD01070109;AGCD01070110;XM_013507569 XP_013363023 MODEL 8888378 protein-coding Slc44a3 solute carrier family 44 member 3 NW_004955435 3851 80691 + 102023947 AGCD01032711;GBCE01127157;GBDI01354385;XM_005388779;XM_005388780;XM_013516523;XM_013516524;XM_013516525 XP_005388836;XP_005388837;XP_013371977;XP_013371978;XP_013371979 MODEL 8888259 ncrna LOC102018720 uncharacterized LOC102018720 NW_004955415 16882130 16886583 - 102018720 AGCD01016404;XR_260301 MODEL 8799017 protein-coding LOC102006887 putative olfactory receptor 2W6 NW_004955465 13466321 13483771 + 102006887 AGCD01050609;AGCD01050610;AGCD01050611;GBDF01209454;XM_005399013;XM_013521796 XP_005399070;XP_013377250 MODEL 8966085 protein-coding LOC102012676 guanylate cyclase soluble subunit beta-2-like NW_004955431 4387868 4457281 - 102012676 AGCD01029996;AGCD01029997;AGCD01029998;AGCD01029999;XM_013515724 XP_013371178 MODEL 8717809 protein-coding LOC102009512 aldehyde dehydrogenase family 3 member B2-like NW_004955422 17841051 17848453 + 102009512 AGCD01022932;GBDK01152699;XM_005384296 XP_005384353 MODEL 9012750 protein-coding Serpina5 serpin family A member 5 ENCODES a protein that exhibits acrosin binding (ortholog); phosphatidylcholine binding (ortholog); protease binding (ortholog); INVOLVED IN negative regulation of proteolysis (ortholog); seminal clot liquefaction (ortholog); seminal vesicle development (ortholog); PARTICIPATES IN fibrinolysis pathway; ASSOCIATED WITH amphetamine abuse (ortholog); Arterial Occlusive Diseases (ortholog); cholestasis (ortholog); FOUND IN acrosomal membrane (ortholog); external side of plasma membrane (ortholog); extracellular exosome (ortholog) NW_004955438 17787398 17796013 - 102019959 AGCD01035451;GBDF01001290;XM_005390388 XP_005390445 MODEL 8870275 protein-coding Snrnp40 small nuclear ribonucleoprotein U5 subunit 40 FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955452 9759452 9793105 - 102007081 AGCD01044260;AGCD01044261;GBBH01208189;XM_005395015 XP_005395072 MODEL 8717042 protein-coding LOC102027184 olfactory receptor 3A1 NW_004955481 180252 181211 + 102027184 AGCD01056783;XM_013503360 XP_013358814 MODEL 8979565 ncrna LOC102025811 uncharacterized LOC102025811 NW_004955423 17199291 17206236 + 102025811 AGCD01023847;GBDF01177742;XR_001234125;XR_001234126;XR_260980 MODEL 8989629 protein-coding Psmd2 proteasome 26S subunit ubiquitin receptor, non-ATPase 2 INVOLVED IN regulation of AMPA receptor activity (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog); proteasome regulatory particle (ortholog) NW_004955420 23184914 23194809 - 102023604 AGCD01021233;GBDK01003599;XM_005383335 XP_005383392 MODEL 9009264 protein-coding LOC102027872 zinc finger protein 709-like NW_004955495 2499974 2504125 + 102027872 AGCD01061781;GBCE01187451;GBCE01187452;XM_013505118 XP_013360572 MODEL 8718651 protein-coding LOC102015656 zinc finger protein 709-like NW_004955432 4541720 4566319 + 102015656 AGCD01030725;AGCD01030726;GBDF01013752;XM_013515929;XM_013515931 XP_013371383;XP_013371385 MODEL 10303271 ncrna LOC106147072 uncharacterized LOC106147072 NW_004955515 1253399 1273984 + 106147072 AGCD01067222;AGCD01067223;XR_001231789;XR_001231790;XR_001231791 MODEL 8883181 protein-coding Ric3 RIC3 acetylcholine receptor chaperone ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); protein folding chaperone (ortholog); INVOLVED IN positive regulation of cytosolic calcium ion concentration (ortholog); positive regulation of protein localization to cell surface (ortholog); protein-containing complex assembly (ortholog); FOUND IN endoplasmic reticulum (ortholog); membrane (ortholog) NW_004955414 23925149 23967772 - 102016259 AGCD01015530;AGCD01015531;AGCD01015532;GBDJ01032040;XM_005380215;XM_013512016 XP_005380272;XP_013367470 MODEL 8856542 ncrna LOC102026188 uncharacterized LOC102026188 NW_004955408 6634902 6691460 - 102026188 AGCD01008180;GBDF01127988;XR_001232044;XR_001232045 MODEL 9004357 protein-coding LOC102028883 olfactory receptor 5B3-like NW_004955511 3339841 3340767 - 102028883 AGCD01066459;XM_005408030 XP_005408087 MODEL 8704877 protein-coding LOC102028532 cytochrome b561 ENCODES a protein that exhibits transmembrane monodehydroascorbate reductase activity (ortholog); INVOLVED IN ascorbate homeostasis (ortholog); intracellular iron ion homeostasis (ortholog); ASSOCIATED WITH Orthostatic Hypotension 2 (ortholog); FOUND IN chromaffin granule membrane (ortholog) NW_004955478 8362190 8366947 + 102028532 AGCD01056023;AGCD01056024;GBBH01031184;GBDF01278544;XM_005402225;XM_013503197 XP_005402282;XP_013358651 MODEL 8705101 protein-coding LOC102011438 octapeptide-repeat protein T2-like NW_004955414 22365294 22365779 - 102011438 AGCD01015455;XM_005380507 XP_005380564 MODEL 10237271 ncrna LOC106148165 uncharacterized LOC106148165 NW_004955416 20926794 20934083 + 106148165 AGCD01017473;GBBH01171132;XR_001233349 MODEL 8944439 protein-coding Sdc3 syndecan 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cell adhesion (ortholog); regulation of cell migration (ortholog); PARTICIPATES IN melanocortin system pathway; syndecan signaling pathway; ASSOCIATED WITH obesity (ortholog); FOUND IN axon (ortholog); membrane (ortholog); microspike (ortholog) NW_004955452 9442860 9479776 - 102003086 AGCD01044237;AGCD01044238;GBCB01111838;XM_005395001;XM_005395002;XM_013519686 XP_005395058;XP_005395059;XP_013375140 MODEL 9062423 pseudo LOC102017567 chromobox protein homolog 5 pseudogene NW_004955417 26988906 26990379 + 102017567 AGCD01018530 MODEL 8999017 protein-coding Pou3f4 POU class 3 homeobox 4 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); double-stranded DNA binding (ortholog); minor groove of adenine-thymine-rich DNA binding (ortholog); INVOLVED IN cochlea morphogenesis (ortholog); forebrain neuron differentiation (ortholog); inner ear development (ortholog); ASSOCIATED WITH Deafness (ortholog); Ependymomas (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955529 2726121 2727311 + 102020605 AGCD01069754;GBCB01037300;XM_005410076 XP_005410133 MODEL 8894040 protein-coding Thap7 THAP domain containing 7 ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); general transcription initiation factor binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN chromatin organization (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN chromatin (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955442 19311307 19313779 + 102022025 AGCD01038052;GBDF01090370;XM_005391822 XP_005391879 MODEL 8972755 pseudo LOC102023374 glutamate dehydrogenase 1, mitochondrial-like NW_004955423 16916856 16946608 + 102023374 AGCD01023843;XR_260975 MODEL 8882702 protein-coding Brd8 bromodomain containing 8 ENCODES a protein that exhibits nuclear thyroid hormone receptor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN cellular response to thyroid hormone stimulus (ortholog); positive regulation of double-strand break repair via homologous recombination (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH colorectal adenocarcinoma (ortholog); endometriosis (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nucleoplasm (ortholog); nucleosome (ortholog) NW_004955418 2232853 2275812 + 102005259 AGCD01018753;AGCD01018754;GBCE01097970;XM_005382124;XM_005382125;XM_005382126;XM_005382127;XM_005382128;XM_005382129;XM_005382130;XM_013512994;XM_013512995;XM_013512996;XM_013512997 XP_005382181;XP_005382182;XP_005382183;XP_005382184;XP_005382185;XP_005382186;XP_005382187;XP_013368448;XP_013368449;XP_013368450;XP_013368451 MODEL 8887014 protein-coding Ppp4r3b protein phosphatase 4 regulatory subunit 3B INVOLVED IN positive regulation of gluconeogenesis (ortholog); protein dephosphorylation (ortholog); regulation of double-strand break repair (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955424 27461919 27520649 + 102007034 AGCD01025118;GBCB01042305;GBDF01005409;XM_013514663;XM_013514664;XM_013514665;XM_013514666 XP_013370117;XP_013370118;XP_013370119;XP_013370120 MODEL 8751383 protein-coding LOC102024394 uncharacterized LOC102024394 NW_004955570 564487 673072 + 102024394 AGCD01074742;AGCD01074743;AGCD01074744;AGCD01074745;AGCD01074746;AGCD01074747;AGCD01074748;AGCD01074749;AGCD01074750;AGCD01074751;AGCD01074752;AGCD01074753;AGCD01074754;XM_013509383 XP_013364837 MODEL 9060054 protein-coding Parp9 poly(ADP-ribose) polymerase family member 9 ENCODES a protein that exhibits ADP-D-ribose binding (ortholog); enzyme binding (ortholog); enzyme inhibitor activity (ortholog); INVOLVED IN DNA damage checkpoint signaling (ortholog); double-strand break repair (ortholog); negative regulation of catalytic activity (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955427 21770158 21806091 - 102011564 AGCD01027458;AGCD01027459;GBBH01091621;XM_013515094;XM_013515095;XM_013515096 XP_013370548;XP_013370549;XP_013370550 MODEL 8772730 protein-coding Relch RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing INVOLVED IN intracellular cholesterol transport (ortholog); FOUND IN recycling endosome (ortholog); trans-Golgi network (ortholog) NW_004955402 46114835 46226330 + 102019972 AGCD01001151;AGCD01001152;AGCD01001153;AGCD01001154;GBDK01224883;XM_005373018;XM_005373019;XM_013511190;XM_013511192;XM_013511197;XR_001232916 XP_005373075;XP_005373076;XP_013366644;XP_013366646;XP_013366651 MODEL 39133564 snorna U3 Small nucleolar RNA U3 39131975 snorna SNORA2C small nucleolar RNA, H/ACA box 2C 8770167 pseudo LOC102030329 BH3-interacting domain death agonist pseudogene NW_004955424 2021796 2023527 + 102030329 AGCD01024260;XM_005385429 MODEL 39131499 protein-coding PLAC9 placenta associated 9 8823034 protein-coding Rab8b RAB8B, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); signaling receptor binding (ortholog); TPR domain binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); cell-substrate junction organization (ortholog); cilium assembly (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Liver Reperfusion Injury (ortholog); FOUND IN cell tip (ortholog); endosome membrane (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955450 12026784 12095332 - 102028150 AGCD01042686;AGCD01042687;GBDJ01140085;XM_005393793 XP_005393850 MODEL 9027280 protein-coding Prp4k pre-mRNA processing factor kinase PRP4K ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN positive regulation of hippo signaling (ortholog); positive regulation of protein export from nucleus (ortholog); regulation of mitotic cell cycle spindle assembly checkpoint (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); kinetochore (ortholog); nuclear speck (ortholog) NW_004955465 9359634 9392913 - 102012619 AGCD01050491;AGCD01050492;GBBH01026999;XM_005398892;XR_001236750;XR_263254;XR_263256;XR_263258;XR_263259;XR_263260 XP_005398949 MODEL 9055654 protein-coding Elp3 elongator acetyltransferase complex subunit 3 ENCODES a protein that exhibits acetyltransferase activity (ortholog); INVOLVED IN central nervous system development (ortholog); neuron migration (ortholog); positive regulation of cell migration (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Animal Disease Models (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); elongator holoenzyme complex (ortholog) NW_004955403 50565496 50635226 + 102011270 AGCD01002967;GBDF01124985;XM_005373765;XM_005373767 XP_005373822;XP_005373824 MODEL 8860755 ncrna LOC102011050 uncharacterized LOC102011050 NW_004955440 19071638 19074811 - 102011050 AGCD01036626;GBDF01013047;XR_262047 MODEL 8793209 protein-coding Pde3a phosphodiesterase 3A ENCODES a protein that exhibits 3',5'-cGMP-inhibited cyclic-nucleotide phosphodiesterase activity (ortholog); 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); cellular response to cGMP (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); hypertension and brachydactyly syndrome (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog) NW_004955413 16340827 16642731 + 102013492 AGCD01014105;AGCD01014106;AGCD01014107;AGCD01014108;GBBH01170592;XM_005379045 XP_005379102 MODEL 8844587 protein-coding LOC102003692 cytoplasmic FMR1-interacting protein 1 NW_004955533 1057633 1203027 + 102003692 AGCD01070337;AGCD01070338;AGCD01070339;AGCD01070340;AGCD01070341;AGCD01070342;AGCD01070343;AGCD01070344;AGCD01070345;AGCD01070346;AGCD01070347;AGCD01070348;GBBH01063748;GBDF01122441;XM_013507676 XP_013363130 MODEL 10318582 ncrna LOC106149912 uncharacterized LOC106149912 NW_004955457 358067 371560 - 106149912 AGCD01046709;AGCD01046710;AGCD01046711;XR_001236377 MODEL 9021111 protein-coding Slc44a4 solute carrier family 44 member 4 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); thiamine pyrophosphate transmembrane transporter activity (ortholog); INVOLVED IN acetylcholine biosynthetic process (ortholog); acetylcholine secretion (ortholog); choline transport (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 72 (ortholog); nonsyndromic deafness (ortholog); FOUND IN apical plasma membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955437 383523 396456 - 102003278 AGCD01034128;AGCD01034129;GBDF01148766;XM_005389391 XP_005389448 MODEL 8983765 protein-coding Smad1 SMAD family member 1 ENCODES a protein that exhibits co-SMAD binding (ortholog); DEAD/H-box RNA helicase binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN anti-Mullerian hormone receptor signaling pathway (ortholog); BMP signaling pathway (ortholog); bone development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH Cocaine-Related Disorders (ortholog); COVID-19 (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955428 1357398 1429521 + 102006052 AGCD01027609;AGCD01027610;AGCD01027611;GBDJ01233141;XM_005386647;XM_013515300;XM_013515301 XP_005386704;XP_013370754;XP_013370755 MODEL 8735017 protein-coding LOC102011439 interferon-inducible GTPase 1-like NW_004955415 3743539 3769145 + 102011439 AGCD01015950;AGCD01015951;AGCD01015952;GBCB01074015;XM_005380561;XM_013512404 XP_005380618;XP_013367858 MODEL 8905570 protein-coding Top1 DNA topoisomerase I ENCODES a protein that exhibits ATP binding (ortholog); chromatin binding (ortholog); chromatin DNA binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); cellular response to luteinizing hormone stimulus (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN irinotecan pharmacodynamics pathway; irinotecan pharmacokinetics pathway; ASSOCIATED WITH disease of cellular proliferation (ortholog); Disease Progression (ortholog); Drug-Related Side Effects and Adverse Reactions (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); dense fibrillar component (ortholog) NW_004955445 15834017 15922785 - 102005524 AGCD01039857;AGCD01039858;AGCD01039859;AGCD01039860;GBDJ01176800;XM_005392521 XP_005392578 MODEL 8997249 protein-coding Sdc4 syndecan 4 ENCODES a protein that exhibits fibronectin binding (ortholog); identical protein binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN inner ear receptor cell stereocilium organization (ortholog); negative regulation of T cell proliferation (ortholog); neural tube closure (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH bacterial infectious disease (ortholog); COVID-19 (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN cell surface (ortholog); costamere (ortholog); extracellular region (ortholog) NW_004955445 11990916 12009178 + 102008039 AGCD01039731;GBCQ01033149;XM_005392434 XP_005392491 MODEL 8791365 protein-coding Trim14 tripartite motif containing 14 ENCODES a protein that exhibits molecular adaptor activity (ortholog); transcription coactivator activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); inflammatory response (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial outer membrane (ortholog); nucleus (ortholog) NW_004955419 27390098 27420727 + 102019701 AGCD01020432;AGCD01020433;AGCD01020434;GBBH01036750;GBDI01107401;XM_013513283 XP_013368737 MODEL 9053487 protein-coding Wars2 tryptophanyl tRNA synthetase 2, mitochondrial ENCODES a protein that exhibits tryptophan-tRNA ligase activity (ortholog); INVOLVED IN positive regulation of angiogenesis (ortholog); vasculogenesis (ortholog); PARTICIPATES IN tryptophan metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); Mitochondrial Neurodevelopmental Disorder, with Abnormal Movements and Lactic Acidosis, with or without Seizures (ortholog); Parkinsonism-Dystonia, Childhood-Onset, 3 (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955435 22032230 22115138 - 102014082 AGCD01033489;AGCD01033490;AGCD01033491;GBCB01110388;XM_005389073;XM_005389075 XP_005389130;XP_005389132 MODEL 8901899 protein-coding Serpina6 serpin family A member 6 ENCODES a protein that exhibits molecular carrier activity (ortholog); steroid binding (ortholog); INVOLVED IN glucocorticoid metabolic process (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); corticosteroid-binding globulin deficiency (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN extracellular region (ortholog) NW_004955438 16356600 16380861 - 102014492 AGCD01035406;AGCD01035407;AGCD01035408;XM_013517149 XP_013372603 MODEL 8804473 protein-coding LOC102021647 major allergen I polypeptide chain 2-like NW_004955468 4158537 4170751 - 102021647 AGCD01051893;GBDF01099579;XM_013522294 XP_013377748 MODEL 8991053 pseudo LOC102017571 zinc finger protein 23 pseudogene NW_004955418 4269959 4271996 + 102017571 AGCD01018816 MODEL 8744107 protein-coding Rasl12 RAS like family 12 NW_004955450 10352574 10363906 + 102009901 AGCD01042614;GBCB01061740;GBCE01108831;XM_005393733 XP_005393790 MODEL 8746048 protein-coding Slc10a3 solute carrier family 10 member 3 INVOLVED IN response to retinoic acid (ortholog) NW_004955580 1002029 1005673 - 102005197 AGCD01075638;GBCE01024045;XM_005414206 XP_005414263 MODEL 9054681 protein-coding Snrnp48 small nuclear ribonucleoprotein U11/U12 subunit 48 ASSOCIATED WITH Carvajal syndrome (ortholog); FOUND IN nucleoplasm (ortholog); spliceosomal complex (ortholog); U11/U12 snRNP (ortholog) NW_004955465 6339362 6353563 - 102027391 AGCD01050441;GBDJ01316518;XM_005398851 XP_005398908 MODEL 8720025 protein-coding Puf60 poly(U) binding splicing factor 60 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH CHARGE syndrome (ortholog); Experimental Neoplasms (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955454 2482968 2497339 - 102014866 AGCD01045022;GBDK01022705;XM_005395816;XM_005395817;XM_005395818;XM_013520058;XM_013520059;XM_013520060 XP_005395873;XP_005395874;XP_005395875;XP_013375512;XP_013375513;XP_013375514 MODEL 8786661 protein-coding LOC102023380 acyl-coenzyme A thioesterase THEM4-like NW_004955427 24601080 24609428 - 102023380 AGCD01027513;GBDI01314053;XM_005386553;XM_013515040 XP_005386610;XP_013370494 MODEL 9049584 pseudo LOC102008412 transmembrane protein 208 pseudogene NW_004955417 13153802 13154322 + 102008412 AGCD01018172 MODEL 9014307 pseudo LOC102012678 60S ribosomal protein L26 pseudogene NW_004955523 522319 523767 - 102012678 AGCD01068463 MODEL 9041316 ncrna LOC102018722 uncharacterized LOC102018722 NW_004955476 7403453 7410048 + 102018722 AGCD01055353;GBDF01016286;XR_263625 MODEL 9030372 pseudo LOC102006890 small ubiquitin-related modifier 2 pseudogene NW_004955412 9882267 9886715 + 102006890 AGCD01012749 MODEL 8716548 protein-coding LOC102005449 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955460 10831510 10832892 + 102005449 AGCD01048617;XM_013521142 XP_013376596 MODEL 8902302 protein-coding LOC102009513 40S ribosomal protein S27-like NW_004955422 18850193 18850985 - 102009513 AGCD01022964;GBCQ01146185;XM_005384396 XP_005384453 MODEL 8941197 ncrna LOC102027188 uncharacterized LOC102027188 NW_004955419 7287434 7303006 - 102027188 AGCD01019877;GBDJ01398831;XR_001233606;XR_001233607;XR_001233608;XR_260617;XR_260619 MODEL 10186628 ncrna LOC106149913 uncharacterized LOC106149913 NW_004955457 2828070 2833723 + 106149913 AGCD01046751;XR_001236378 MODEL 8759472 ncrna LOC102027873 uncharacterized LOC102027873 NW_004955495 3841752 3842867 - 102027873 AGCD01061886;GBDF01260729;XR_264146 MODEL 8707347 ncrna LOC102015660 uncharacterized LOC102015660 NW_004955434 17409506 17447739 + 102015660 AGCD01032535;AGCD01032536;AGCD01032537;GBDJ01404981;XR_001234793;XR_001234794;XR_001234795;XR_001234796;XR_261625 MODEL 9019187 protein-coding Lhfpl1 LHFPL tetraspan subfamily member 1 NW_004955490 3156323 3215925 + 102028761 AGCD01060160;AGCD01060161;GBCB01097424;XM_005404629;XM_005404630 XP_005404686;XP_005404687 MODEL 8806508 pseudo LOC102010293 olfactory receptor 10AG1-like NW_004955511 885492 889414 - 102010293 AGCD01066346 MODEL 39131524 protein-coding RTL5 retrotransposon Gag like 5 8966322 pseudo LOC102026190 retinol dehydrogenase 14 pseudogene NW_004955457 6710028 6710786 + 102026190 AGCD01046851 MODEL 8894331 protein-coding Sdcbp syndecan binding protein ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); ephrin receptor binding (ortholog); frizzled binding (ortholog); INVOLVED IN negative regulation of receptor internalization (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of cell growth (ortholog); PARTICIPATES IN interleukin-5 signaling pathway; syndecan signaling pathway; ASSOCIATED WITH osteoarthritis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955454 17093930 17113491 + 102016345 AGCD01045545;GBDF01080642;XM_013520111;XM_013520112 XP_013375565;XP_013375566 MODEL 8960193 protein-coding LOC102021649 olfactory receptor 52J3-like NW_004955414 20580283 20581221 - 102021649 AGCD01015380;XM_005380062 XP_005380119 MODEL 8777948 pseudo LOC102024396 coiled-coil domain-containing protein 152-like NW_004955575 268995 270575 + 102024396 AGCD01075210 MODEL 10394120 ncrna LOC106148166 uncharacterized LOC106148166 NW_004955416 6890727 6898731 - 106148166 AGCD01016957;GBCC01020431;XR_001233351 MODEL 8784056 protein-coding Brd9 bromodomain containing 9 ENCODES a protein that exhibits histone reader activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH Sezary's disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); site of double-strand break (ortholog) NW_004955504 416145 434132 - 102028991 AGCD01064819;GBCE01000275;XM_005407029;XM_005407030;XM_013505887;XM_013505888;XM_013505889 XP_005407086;XP_005407087;XP_013361341;XP_013361342;XP_013361343 MODEL 8727744 pseudo LOC102019123 arylacetamide deacetylase-like NW_004955448 3049316 3050504 + 102019123 AGCD01041301 MODEL 8838227 protein-coding Slc10a4 solute carrier family 10 member 4 ENCODES a protein that exhibits bile acid:sodium symporter activity (ortholog); INVOLVED IN adult behavior (ortholog); regulation of neurotransmitter loading into synaptic vesicle (ortholog); response to xenobiotic stimulus (ortholog); FOUND IN cholinergic synapse (ortholog); dopaminergic synapse (ortholog); plasma membrane (ortholog) NW_004955447 19189516 19194982 - 102012704 AGCD01041205;GBCE01165455;GBCQ01088285;XM_005392971 XP_005393028 MODEL 39133567 snorna U3 Small nucleolar RNA U3 8989200 protein-coding Ppp4r4 protein phosphatase 4 regulatory subunit 4 ENCODES a protein that exhibits protein phosphatase inhibitor activity (ortholog); protein serine/threonine phosphatase inhibitor activity (ortholog); INVOLVED IN blastocyst hatching (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); protein serine/threonine phosphatase complex (ortholog) NW_004955438 16237472 16332542 + 102012363 AGCD01035402;AGCD01035403;AGCD01035404;GBBH01226494;GBDI01108160;XM_005390366;XM_005390367;XM_005390368;XM_013517249 XP_005390423;XP_005390424;XP_005390425;XP_013372703 MODEL 9029502 protein-coding Plac9 placenta associated 9 NW_004955437 13100613 13113555 + 102015764 AGCD01034646;GBDJ01176640;XM_005389884;XM_013517119;XM_013517120;XM_013517121 XP_005389941;XP_013372573;XP_013372574;XP_013372575 MODEL 8845518 pseudo LOC102006532 10 kDa heat shock protein, mitochondrial pseudogene NW_004955451 3071650 3074700 - 102006532 AGCD01043035 MODEL 8764029 protein-coding Elp4 elongator acetyltransferase complex subunit 4 INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH aniridia (ortholog); aniridia 1 (ortholog); Aniridia 2 (ortholog); FOUND IN cytoplasm (ortholog); elongator holoenzyme complex (ortholog); nucleoplasm (ortholog) NW_004955476 9850110 10054313 + 102025238 AGCD01055400;AGCD01055401;AGCD01055402;AGCD01055403;AGCD01055404;AGCD01055405;AGCD01055406;AGCD01055407;GBDF01160723;XM_005401773;XM_005401774 XP_005401830;XP_005401831 MODEL 8929016 protein-coding LOC102025812 calcium-activated chloride channel regulator 4-like NW_004955423 7580393 7613276 - 102025812 AGCD01023608;AGCD01023609;GBDF01291561;XM_005385358 XP_005385415 MODEL 8828118 protein-coding LOC102010684 C-type lectin domain family 2 member F-like NW_004955413 7860820 7873954 + 102010684 AGCD01013834;GBDF01050906;XM_005378944 XP_005379001 MODEL 8922769 protein-coding Psmd3 proteasome 26S subunit, non-ATPase 3 INVOLVED IN regulation of AMPA receptor activity (ortholog); ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); proteasome accessory complex (ortholog) NW_004955451 14666882 14685573 + 102007615 AGCD01043565;AGCD01043566;GBBH01033601;GBDF01005924;XM_005394339 XP_005394396 MODEL 8795030 protein-coding Pou4f1 POU class 4 homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cell migration in hindbrain (ortholog); cellular response to cytokine stimulus (ortholog); cellular response to estradiol stimulus (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); ATAXIA, INTENTION TREMOR, AND HYPOTONIA SYNDROME, CHILDHOOD-ONSET (ortholog); Uterine Cervical Dysplasia (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); neuron projection (ortholog) NW_004955404 28812762 28818024 + 102023975 AGCD01003964;AGCD01003965;GBDF01291045;XM_005374236 XP_005374293 MODEL 8803934 protein-coding LOC102028533 uncharacterized LOC102028533 NW_004955478 8929963 8935018 - 102028533 AGCD01056048;GBDF01110658;XM_005402297 XP_005402354 MODEL 8854999 ncrna LOC102028884 uncharacterized LOC102028884 NW_004955430 747808 768242 - 102028884 AGCD01029104;AGCD01029105;AGCD01029106;GBDF01090139;XR_001234546;XR_261401;XR_261402 MODEL 8726600 protein-coding Serpina7 serpin family A member 7 ENCODES a protein that exhibits hormone binding (ortholog); INVOLVED IN post-embryonic development (ortholog); response to corticosterone (ortholog); response to nutrient levels (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); diabetic ketoacidosis (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN extracellular region (ortholog) NW_004955548 2855377 2861946 - 102006287 AGCD01072411;GBDF01025901;XM_005412013 XP_005412070 MODEL 8804761 ncrna LOC102030330 uncharacterized LOC102030330 NW_004955424 25228422 25230326 + 102030330 AGCD01025040;XR_261108 MODEL 8909367 protein-coding Parpbp PARP1 binding protein INVOLVED IN negative regulation of double-strand break repair via homologous recombination (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955405 37297816 37357191 + 102030034 AGCD01005450;AGCD01005451;AGCD01005452;GBBH01195619;XM_005374563;XM_005374564;XM_005374565;XM_005374566;XM_013518744;XM_013518752;XM_013518756 XP_005374620;XP_005374621;XP_005374622;XP_005374623;XP_013374198;XP_013374206;XP_013374210 MODEL 8924258 protein-coding Rab9a RAB9A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN positive regulation of exocytosis (ortholog); receptor-mediated endocytosis (ortholog); regulation of protein localization (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); late endosome (ortholog); lysosome (ortholog) NW_004955519 4489159 4496089 - 102026144 AGCD01067983;GBBH01090631;XM_005409203;XM_005409204;XM_005409206;XM_013506993;XR_001231857 XP_005409260;XP_005409261;XP_005409263;XP_013362447 MODEL 9014819 ncrna LOC102019125 uncharacterized LOC102019125 NW_004955402 25007914 25012011 + 102019125 AGCD01000650;GBDF01105810;XR_259066 MODEL 8799652 protein-coding Pum1 pumilio RNA binding family member 1 ENCODES a protein that exhibits miRNA binding (ortholog); mRNA 3'-UTR binding (ortholog); RNA binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); miRNA processing (ortholog); mRNA destabilization (ortholog); ASSOCIATED WITH cerebellar ataxia type 47 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Developmental Disabilities (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoplasmic stress granule (ortholog) NW_004955452 9487725 9623565 - 102004033 AGCD01044238;AGCD01044239;AGCD01044240;AGCD01044241;AGCD01044242;AGCD01044243;AGCD01044244;AGCD01044245;AGCD01044246;AGCD01044247;GBCB01038506;XM_005395006;XM_005395007;XM_005395009;XM_005395011;XM_005395013;XM_005395014;XM_013519591;XM_013519592;XM_013519593;XM_013519594;XM_013519595;XM_013519596;XM_013519597 XP_005395063;XP_005395064;XP_005395066;XP_005395068;XP_005395070;XP_005395071;XP_013375045;XP_013375046;XP_013375047;XP_013375048;XP_013375049;XP_013375050;XP_013375051 MODEL 9040633 protein-coding Pde3b phosphodiesterase 3B ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); 3',5'-cyclic-nucleotide phosphodiesterase activity (ortholog); INVOLVED IN endocrine pancreas development (ortholog); glucose homeostasis (ortholog); insulin receptor signaling pathway (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); guanyl-nucleotide exchange factor complex (ortholog) NW_004955414 29783999 29911329 + 102024216 AGCD01015716;AGCD01015717;GBBH01229313;GBCQ01150747;XM_005380333 XP_005380390 MODEL 8782723 ncrna LOC102006893 uncharacterized LOC102006893 NW_004955468 7026096 7045290 - 102006893 AGCD01051993;AGCD01051994;GBCE01020831;XR_001236952;XR_263395 MODEL 8931125 protein-coding Thap8 THAP domain containing 8 FOUND IN nucleoplasm (ortholog) NW_004955468 2545327 2559106 + 102010888 AGCD01051825;AGCD01051826;AGCD01051827;GBDK01230411;XM_005399924 XP_005399981 MODEL 8833003 ncrna LOC102011440 uncharacterized LOC102011440 NW_004955476 3980903 3992756 - 102011440 AGCD01055264;GBDF01249578;XR_263619 MODEL 10305017 ncrna LOC106147073 uncharacterized LOC106147073 NW_004955515 2397994 2408255 - 106147073 AGCD01067249;GBCB01083854;XR_001231792 MODEL 8755833 protein-coding Slc44a5 solute carrier family 44 member 5 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog); FOUND IN plasma membrane (ortholog) NW_004955423 17260324 17615777 + 102026230 AGCD01023852;AGCD01023853;AGCD01023854;AGCD01023855;AGCD01023856;AGCD01023857;AGCD01023858;GBDF01088885;XM_005385229;XM_013514352;XM_013514353;XM_013514354 XP_005385286;XP_013369806;XP_013369807;XP_013369808 MODEL 10163428 ncrna LOC106149914 uncharacterized LOC106149914 NW_004955457 351907 353877 + 106149914 AGCD01046708;XR_001236379 MODEL 9062780 protein-coding Ric8a RIC8 guanine nucleotide exchange factor A ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); basement membrane organization (ortholog); cell migration involved in gastrulation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955476 11827004 11833495 - 102029962 AGCD01055475;GBBH01139853;XM_005401889;XM_005401890;XM_013502915 XP_005401946;XP_005401947;XP_013358369 MODEL 8936399 ncrna LOC102017574 uncharacterized LOC102017574 NW_004955419 16993391 17030182 + 102017574 AGCD01020138;AGCD01020139;GBDF01119453;XR_001233601;XR_001233602;XR_001233603;XR_001233604;XR_001233605;XR_260638;XR_260639 MODEL 8820794 protein-coding Top1mt DNA topoisomerase I mitochondrial ASSOCIATED WITH sensorineural hearing loss (ortholog); FOUND IN mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955454 2020884 2045939 - 102027810 AGCD01045000;AGCD01045001;AGCD01045002;GBDJ01349204;XM_005395761;XM_013520028;XM_013520029;XM_013520030;XM_013520032;XR_001236215 XP_005395818;XP_013375482;XP_013375483;XP_013375484;XP_013375486 MODEL 39132098 snorna SNORA30B small nucleolar RNA, H/ACA box 30B 8983370 protein-coding Was WASP actin nucleation promoting factor ENCODES a protein that exhibits identical protein binding (ortholog); phospholipase binding (ortholog); protein kinase binding (ortholog); INVOLVED IN actin filament polymerization (ortholog); actin filament-based movement (ortholog); actin polymerization or depolymerization (ortholog); ASSOCIATED WITH Cytomegalovirus Infections (ortholog); genetic disease (ortholog); hemorrhagic disease (ortholog); FOUND IN actin filament (ortholog); cell-cell junction (ortholog); cytosol (ortholog) NW_004955543 243618 253489 + 102022858 AGCD01071569;GBBH01116435;XM_005411273 XP_005411330 MODEL 8750355 protein-coding Rell1 RELT like 1 INVOLVED IN positive regulation of p38MAPK cascade (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN plasma membrane (ortholog) NW_004955443 9461570 9526986 + 102009997 AGCD01038357;GBCE01152742;XM_005392010;XM_013518114 XP_005392067;XP_013373568 MODEL 9030768 protein-coding Snrnp70 small nuclear ribonucleoprotein U1 subunit 70 ENCODES a protein that exhibits RNA binding (ortholog); U1 snRNA binding (ortholog); U1 snRNP binding (ortholog); INVOLVED IN cellular response to retinoic acid (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); cellular response to tumor necrosis factor (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Developmental Disabilities (ortholog); disease of mental health (ortholog); FOUND IN lysosomal lumen (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955559 1618246 1634144 - 102024057 AGCD01073654;GBDF01045469;XM_005412908;XM_005412911 XP_005412965;XP_005412968 MODEL 8766878 protein-coding Prpf18 pre-mRNA processing factor 18 INVOLVED IN negative regulation of protein metabolic process (ortholog); PARTICIPATES IN spliceosome pathway NW_004955429 20581457 20613258 - 102009742 AGCD01028986;GBBH01209489;XM_005387160;XM_013515516 XP_005387217;XP_013370970 MODEL 8863969 protein-coding LOC102011051 tetratricopeptide repeat protein 39B-like NW_004955441 6423398 6437402 + 102011051 AGCD01036920;GBDF01008292;XM_005390888 XP_005390945 MODEL 10382220 ncrna LOC106148167 uncharacterized LOC106148167 NW_004955416 2714604 2725015 + 106148167 AGCD01016862;GBDK01256724;XR_001233352 MODEL 8824120 ncrna LOC102012680 uncharacterized LOC102012680 NW_004955435 7947806 7951442 - 102012680 AGCD01032982;GBDF01049854;XR_001234875;XR_001234876;XR_001234877 MODEL 8810919 protein-coding Slc10a5 solute carrier family 10 member 5 NW_004955417 40256 48658 - 102023355 AGCD01017784;AGCD01017785;GBCQ01072959;XM_005381715 XP_005381772 MODEL 8775346 protein-coding LOC102018725 somatotropin-like NW_004955478 7920783 7923119 + 102018725 AGCD01055998;GBDJ01024839;XM_005402180 XP_005402237 MODEL 9034434 protein-coding Smad2 SMAD family member 2 ENCODES a protein that exhibits chromatin binding (ortholog); co-SMAD binding (ortholog); disordered domain specific binding (ortholog); INVOLVED IN activin receptor signaling pathway (ortholog); adrenal gland development (ortholog); anterior/posterior pattern specification (ortholog); PARTICIPATES IN activin signaling pathway; altered transforming growth factor-beta Smad dependent signaling pathway; colorectal cancer pathway; ASSOCIATED WITH acromicric dysplasia (ortholog); breast carcinoma (ortholog); cervical cancer (ortholog); FOUND IN activin responsive factor complex (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955402 33131760 33217144 - 102007387 AGCD01000837;AGCD01000838;GBDJ01114312;GBDJ01387571;XM_013510523 XP_013365977 MODEL 8838936 ncrna LOC102009517 uncharacterized LOC102009517 NW_004955423 4665440 4705460 + 102009517 AGCD01023541;AGCD01023542;AGCD01023543;GBDF01110689;XR_260953 MODEL 8805524 protein-coding Trim15 tripartite motif containing 15 ENCODES a protein that exhibits molecular sequestering activity (ortholog); transcription coactivator activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); negative regulation of intracellular transport of viral material (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955583 277564 283422 + 102029919 AGCD01075808;XM_013509792 XP_013365246 MODEL 8820705 protein-coding Ppp5c protein phosphatase 5 catalytic subunit ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); G-protein alpha-subunit binding (ortholog); INVOLVED IN cellular response to cadmium ion (ortholog); cellular response to hydrogen peroxide (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; Rho/Rac/Cdc42 mediated signaling pathway; ASSOCIATED WITH Left Ventricular Hypertrophy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); neuronal cell body (ortholog) NW_004955574 523044 545461 + 102025062 AGCD01075110;GBDI01083137;XM_005413826 XP_005413883 MODEL 9062884 ncrna LOC102006535 uncharacterized LOC102006535 NW_004955452 9481411 9485884 + 102006535 AGCD01044238;GBDF01118568;XR_001236068;XR_001236069;XR_001236070;XR_001236071 MODEL 8858709 pseudo LOC102015663 periphilin-1 pseudogene NW_004955529 437395 439074 - 102015663 AGCD01069635;XM_005410064;XM_005410065;XM_005410066 MODEL 9015108 protein-coding LOC102006896 apolipoprotein L2-like NW_004955413 22677705 22696823 + 102006896 AGCD01014312;AGCD01014313;GBBH01039748;XM_013511299 XP_013366753 MODEL 9060759 protein-coding LOC102010294 chromosome unknown open reading frame, human C4orf50 NW_004955514 4112935 4206895 + 102010294 AGCD01067127;AGCD01067128;GBDF01183618;XM_005408860 XP_005408917 MODEL 9010588 pseudo LOC102021653 protein TEX261 pseudogene NW_004955473 37362 38419 + 102021653 AGCD01053831 MODEL 8906053 protein-coding Rtl6 retrotransposon Gag like 6 ASSOCIATED WITH substance-related disorder (ortholog) NW_004955413 29238719 29244112 - 102024106 AGCD01014578;AGCD01014579;GBDF01123354;GBDJ01085414;XM_005379464 XP_005379521 MODEL 8710758 protein-coding LOC102023385 olfactory receptor 4A47-like NW_004955511 106509 107426 - 102023385 AGCD01066320;XM_005407936 XP_005407993 MODEL 8766681 ncrna LOC102026191 uncharacterized LOC102026191 NW_004955408 25236100 25254765 + 102026191 AGCD01008633;AGCD01008634;GBDF01208701;XR_001232069;XR_259716 MODEL 8752892 pseudo LOC102008417 serine/threonine-protein kinase Chk1 pseudogene NW_004955484 9066985 9070701 + 102008417 AGCD01058404 MODEL 8936120 protein-coding LOC102003694 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like NW_004955538 3385693 3395187 - 102003694 AGCD01071162;GBCE01032832;XM_005410855;XM_013507906;XM_013507908;XM_013507909;XM_013507910;XR_001232100 XP_005410912;XP_013363360;XP_013363362;XP_013363363;XP_013363364 MODEL 8721846 protein-coding Sdcbp2 syndecan binding protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN cell population proliferation (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955596 531741 555710 - 102014305 AGCD01076521;AGCD01076522;GBBH01180478;XM_005414702 XP_005414759 MODEL 8940879 ncrna LOC102017575 uncharacterized LOC102017575 NW_004955484 4718134 4736293 - 102017575 AGCD01058230;AGCD01058231;GBDF01021447;XR_263886 MODEL 39133604 snorna U3 Small nucleolar RNA U3 8903769 ncrna LOC102030338 uncharacterized LOC102030338 NW_004955432 2709790 2721265 + 102030338 AGCD01030616;GBDF01306701;XR_261509 MODEL 8700157 protein-coding Brdt bromodomain testis associated ENCODES a protein that exhibits histone binding (ortholog); histone H4 reader activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); male meiosis I (ortholog); male meiotic nuclear division (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH azoospermia (ortholog); oligospermia (ortholog); primary ovarian insufficiency (ortholog); FOUND IN nucleus (ortholog) NW_004955423 2434146 2498523 - 102027081 AGCD01023473;AGCD01023474;AGCD01023475;AGCD01023476;AGCD01023477;GBDF01048977;XM_005385061;XM_013514358;XM_013514359 XP_005385118;XP_013369812;XP_013369813 MODEL 10214972 ncrna LOC106148168 uncharacterized LOC106148168 NW_004955416 7767977 7772322 - 106148168 AGCD01017012;GBDF01157093;XR_001233354 MODEL 8956577 protein-coding Plag1 PLAG1 zinc finger ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN gland morphogenesis (ortholog); multicellular organism growth (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955454 15239042 15281669 - 102011950 AGCD01045490;GBDF01221602;XM_005396081;XM_013520253 XP_005396138;XP_013375707 MODEL 8847101 protein-coding Thap9 THAP domain containing 9 ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); transposase activity (ortholog); INVOLVED IN DNA integration (ortholog); DNA recombination (ortholog); DNA transposition (ortholog) NW_004955433 6906034 6922832 + 102008139 AGCD01031555;AGCD01031556;AGCD01031557;GBBH01144757;GBDF01307948;XM_013516173 XP_013371627 MODEL 8999574 protein-coding Lhfpl2 LHFPL tetraspan subfamily member 2 INVOLVED IN development of primary female sexual characteristics (ortholog); development of primary male sexual characteristics (ortholog); positive regulation of fertilization (ortholog); ASSOCIATED WITH COVID-19 (ortholog); IgA glomerulonephritis (ortholog) NW_004955425 22398503 22556667 + 102014585 AGCD01025820;AGCD01025821;AGCD01025822;GBDF01029543;GBDF01277818;XM_005386018;XM_005386019 XP_005386075;XP_005386076 MODEL 8734819 protein-coding Pde4a phosphodiesterase 4A ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); cAMP binding (ortholog); cyclic-nucleotide phosphodiesterase activity (ortholog); INVOLVED IN cAMP catabolic process (ortholog); cellular response to xenobiotic stimulus (ortholog); modulation of chemical synaptic transmission (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); brucellosis (ortholog); Experimental Seizures (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extrinsic component of membrane (ortholog) NW_004955495 1659499 1693609 + 102004614 AGCD01061709;AGCD01061710;AGCD01061711;GBDF01002208;XM_005405595;XM_005405596;XM_013505161 XP_005405652;XP_005405653;XP_013360615 MODEL 8807181 protein-coding Rassf1 Ras association domain family member 1 ENCODES a protein that exhibits identical protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN DNA damage response (ortholog); positive regulation of protein ubiquitination (ortholog); protein stabilization (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); bladder disease (ortholog); FOUND IN microtubule cytoskeleton (ortholog); nucleus (ortholog) NW_004955532 2132892 2142106 - 102004113 AGCD01070219;AGCD01070220;GBDF01153768;GBDK01000157;XM_005410266;XM_005410267 XP_005410323;XP_005410324 MODEL 8947314 protein-coding LOC102025815 melanoma-associated antigen 8-like NW_004955498 4946583 4947701 - 102025815 AGCD01063033;XM_005406489 XP_005406546 MODEL 8837138 ncrna LOC102024398 uncharacterized LOC102024398 NW_004955448 8864773 8881822 + 102024398 AGCD01041452;GBDF01303232;XR_262466 MODEL 8810186 protein-coding Smad3 SMAD family member 3 ENCODES a protein that exhibits beta-catenin binding (ortholog); bHLH transcription factor binding (ortholog); chromatin binding (ortholog); INVOLVED IN activin receptor signaling pathway (ortholog); adrenal gland development (ortholog); apoptotic process (ortholog); PARTICIPATES IN activin signaling pathway; altered transforming growth factor-beta Smad dependent signaling pathway; colorectal cancer pathway; ASSOCIATED WITH alcoholic cardiomyopathy (ortholog); alcoholic liver cirrhosis (ortholog); Aneurysm (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955450 8747651 8842003 - 102025963 AGCD01042576;GBCE01054141;XM_005393692;XM_005393694;XM_013518932 XP_005393749;XP_005393751;XP_013374386 MODEL 8767456 protein-coding Ric8b RIC8 guanine nucleotide exchange factor B ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); protein folding chaperone (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); regulation of G protein-coupled receptor signaling pathway (ortholog); sensory perception of smell (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955405 40659946 40782870 + 102023663 AGCD01005522;AGCD01005523;AGCD01005524;AGCD01005525;AGCD01005526;AGCD01005527;AGCD01005528;GBDK01360337;XM_013519064;XM_013519068;XM_013519080;XM_013519087;XM_013519095;XR_001235931;XR_001235932;XR_001235933;XR_001235934;XR_001235936 XP_013374518;XP_013374522;XP_013374534;XP_013374541;XP_013374549 MODEL 9055972 protein-coding Psmd4 proteasome 26S subunit ubiquitin receptor, non-ATPase 4 ENCODES a protein that exhibits identical protein binding (ortholog); molecular adaptor activity (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog) NW_004955588 607763 618040 + 102028482 AGCD01076117;GBDF01043329;XM_005414507;XM_005414508 XP_005414564;XP_005414565 MODEL 8886077 protein-coding LOC102028534 G patch domain and KOW motifs-containing protein-like NW_004955417 10893962 10895954 + 102028534 AGCD01018106;GBDF01022953;XM_005381818 XP_005381875 MODEL 8877441 protein-coding Serpina9 serpin family A member 9 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog) NW_004955438 17862064 17875490 + 102020957 AGCD01035456;XM_013517148 XP_013372602 MODEL 8776912 ncrna LOC102005450 uncharacterized LOC102005450 NW_004955409 37458586 37465397 - 102005450 AGCD01010520;GBDJ01346495;XR_001232672;XR_259810 MODEL 9049996 protein-coding Wasf1 WASP family member 1 ENCODES a protein that exhibits protein kinase A binding (ortholog); small GTPase binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cellular response to brain-derived neurotrophic factor stimulus (ortholog); dendrite extension (ortholog); ASSOCIATED WITH COVID-19 (ortholog); generalized epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); lamellipodium (ortholog); mitochondrial outer membrane (ortholog) NW_004955411 34893287 34966670 - 102022176 AGCD01012417;AGCD01012418;GBDF01123264;XM_005377883;XM_005377884;XM_013510825 XP_005377940;XP_005377941;XP_013366279 MODEL 8835896 pseudo LOC102027875 E3 ubiquitin-protein ligase Mdm2 pseudogene NW_004955496 5554541 5559086 + 102027875 AGCD01062355 MODEL 8937108 protein-coding LOC102019130 uncharacterized protein CXorf22-like NW_004955674 10208 53094 + 102019130 AGCD01077956;AGCD01077957;AGCD01077958;AGCD01077959;AGCD01077960;GBCE01169748;XM_005415069 XP_005415126 MODEL 8836594 protein-coding Rab9b RAB9B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); identical protein binding (ortholog); INVOLVED IN receptor-mediated endocytosis (ortholog); FOUND IN phagocytic vesicle (ortholog) NW_004955548 825208 829815 - 102028901 AGCD01072344;GBCQ01164674;XM_005411999 XP_005412056 MODEL 8855937 protein-coding Snrpa small nuclear ribonucleoprotein polypeptide A ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); RNA binding (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); connective tissue disease (ortholog); FOUND IN nucleoplasm (ortholog); precatalytic spliceosome (ortholog); spliceosomal complex (ortholog) NW_004955578 579087 590010 - 102006181 AGCD01075489;GBCQ01041725;XM_005414022;XM_005414023 XP_005414079;XP_005414080 MODEL 8952591 protein-coding Sdccag8 SHH signaling and ciliogenesis regulator SDCCAG8 INVOLVED IN establishment of cell polarity (ortholog); microtubule organizing center organization (ortholog); neuron migration (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 16 (ortholog); cystic kidney disease (ortholog); FOUND IN cell-cell junction (ortholog); centriolar satellite (ortholog); centriole (ortholog) NW_004955406 6694687 6909555 + 102028376 AGCD01005756;AGCD01005757;AGCD01005758;AGCD01005759;AGCD01005760;AGCD01005761;AGCD01005762;GBDF01119111;XM_005374761;XM_005374762;XM_013520309;XM_013520314;XM_013520316;XM_013520317;XM_013520318;XM_013520320 XP_005374818;XP_005374819;XP_013375763;XP_013375768;XP_013375770;XP_013375771;XP_013375772;XP_013375774 MODEL 8996108 protein-coding Elp5 elongator acetyltransferase complex subunit 5 INVOLVED IN positive regulation of cell migration (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); elongator holoenzyme complex (ortholog) NW_004955467 9654532 9660035 - 102024204 AGCD01051520;GBDF01005053;XM_005399532;XM_005399533;XM_005399534;XM_013522088 XP_005399589;XP_005399590;XP_005399591;XP_013377542 MODEL 9033826 protein-coding LOC102010688 olfactory receptor 52D1-like NW_004955414 21652761 21653761 + 102010688 AGCD01015425;XM_005380102 XP_005380159 MODEL 10260250 ncrna LOC106147074 uncharacterized LOC106147074 NW_004955515 407228 409282 + 106147074 AGCD01067198;GBDJ01388559;XR_001231804 MODEL 8719840 protein-coding LOC102009525 sperm motility kinase 2B-like NW_004955429 13400335 13403083 + 102009525 AGCD01028747;GBDK01097126;XM_005386993 XP_005387050 MODEL 150537117 snorna SNORA35 small nucleolar RNA, H/ACA box 35 9014299 protein-coding LOC102010296 uncharacterized LOC102010296 NW_004955516 3709709 3720497 + 102010296 AGCD01067503;AGCD01067504;GBCE01103721;XM_005409002 XP_005409059 MODEL 8919008 protein-coding Rassf10 Ras association domain family member 10 INVOLVED IN positive regulation of neural precursor cell proliferation (ortholog); positive regulation of neurogenesis (ortholog); FOUND IN cytosol (ortholog) NW_004955414 28405024 28407734 + 102016260 AGCD01015681;GBBH01165129;XM_005380309 XP_005380366 MODEL 8846078 pseudo LOC102027196 40S ribosomal protein S21 pseudogene NW_004955492 8910613 8910919 - 102027196 AGCD01060832 MODEL 8800480 protein-coding Rtl9 retrotransposon Gag like 9 ASSOCIATED WITH X-linked spinocerebellar ataxia 1 (ortholog) NW_004955490 5409277 5420508 - 102008324 AGCD01060204;GBDF01110928;XM_005404656 XP_005404713 MODEL 8855899 protein-coding Rell2 RELT like 2 ENCODES a protein that exhibits collagen binding (ortholog); INVOLVED IN positive regulation of cell-substrate adhesion (ortholog); positive regulation of p38MAPK cascade (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); plasma membrane (ortholog) NW_004955415 12134642 12138071 - 102005796 AGCD01016185;GBDF01165826;XM_005380727;XM_013512220;XM_013512221 XP_005380784;XP_013367674;XP_013367675 MODEL 8870437 pseudo LOC102012683 cyclin-dependent kinase 1-like NW_004955530 1703354 1747813 + 102012683 AGCD01069897;AGCD01069898;AGCD01069899 MODEL 39133514 snorna U3 Small nucleolar RNA U3 8822599 ncrna LOC102011444 uncharacterized LOC102011444 NW_004955417 7040994 7068069 - 102011444 AGCD01017997;GBDF01260563;XR_260460 MODEL 8923775 protein-coding Slc10a6 solute carrier family 10 member 6 INVOLVED IN sodium-dependent organic anion transport (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog) NW_004955474 2949773 2982458 + 102030188 AGCD01054315;AGCD01054316;AGCD01054317;AGCD01054318;GBCE01042605;XM_013502783 XP_013358237 MODEL 9013620 protein-coding Smad4 SMAD family member 4 ENCODES a protein that exhibits chromatin binding (ortholog); collagen binding (ortholog); DNA binding (ortholog); INVOLVED IN adrenal gland development (ortholog); anterior/posterior pattern specification (ortholog); atrioventricular canal development (ortholog); PARTICIPATES IN altered transforming growth factor-beta Smad dependent signaling pathway; Bone morphogenetic proteins signaling pathway; colorectal cancer pathway; ASSOCIATED WITH Acro-Osteolysis (ortholog); aortic disease (ortholog); brachydactyly (ortholog); FOUND IN activin responsive factor complex (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955402 35956080 36001746 + 102023215 AGCD01000909;AGCD01000910;GBCB01040153;XM_013510741;XM_013510745;XR_001232810 XP_013366195;XP_013366199 MODEL 8915233 pseudo LOC102030340 UPF0568 protein C14orf166 pseudogene NW_004955433 14492224 14504089 - 102030340 AGCD01031721;AGCD01031722 MODEL 8862318 protein-coding Pum2 pumilio RNA binding family member 2 ENCODES a protein that exhibits lncRNA binding (ortholog); miRNA binding (ortholog); mRNA 3'-UTR binding (ortholog); INVOLVED IN adipose tissue development (ortholog); chromosome organization (ortholog); hair follicle development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN cytoplasmic stress granule (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955469 2810825 2886911 - 102013072 AGCD01052285;AGCD01052286;AGCD01052287;AGCD01052288;GBDK01194835;XM_005400344;XM_005400346;XM_005400350;XM_013522625;XM_013522626;XM_013522627;XM_013522628;XM_013522629;XM_013522630;XM_013522631 XP_005400401;XP_005400403;XP_005400407;XP_013378079;XP_013378080;XP_013378081;XP_013378082;XP_013378083;XP_013378084;XP_013378085 MODEL 10128264 ncrna LOC106148169 uncharacterized LOC106148169 NW_004955416 31619644 31637775 + 106148169 AGCD01017766;XR_001233372 MODEL 10309232 ncrna LOC106149915 uncharacterized LOC106149915 NW_004955457 14777601 14826076 + 106149915 AGCD01047083;AGCD01047084;XR_001236380 MODEL 8999041 protein-coding Slc45a1 solute carrier family 45 member 1 ENCODES a protein that exhibits D-glucose:proton symporter activity (ortholog); galactose:proton symporter activity (ortholog); hexose transmembrane transporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); galactose transmembrane transport (ortholog); transmembrane transport from lysosomal lumen to cytosol (ortholog); ASSOCIATED WITH INTELLECTUAL DEVELOPMENTAL DISORDER WITH NEUROPSYCHIATRIC FEATURES (ortholog); FOUND IN lysosomal membrane (ortholog); membrane (ortholog) NW_004955486 4701889 4732008 - 102023605 AGCD01059063;AGCD01059064;AGCD01059065;AGCD01059066;GBDF01222620;GBDJ01042970;XM_013504132 XP_013359586 MODEL 8917899 protein-coding LOC102028885 olfactory receptor 4P4-like NW_004955511 474783 495822 - 102028885 AGCD01066332;XM_005408193 XP_005408250 MODEL 9037593 protein-coding Pou4f2 POU class 4 homeobox 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN axon extension (ortholog); axon guidance (ortholog); axonogenesis (ortholog); PARTICIPATES IN p53 signaling pathway; FOUND IN cytoplasm (ortholog); euchromatin (ortholog); nuclear speck (ortholog) NW_004955428 2325775 2329122 + 102010927 AGCD01027632;XM_005386664 XP_005386721 MODEL 9035971 protein-coding Plagl1 PLAG1 like zinc finger 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); regulation of gene expression (ortholog); skeletal muscle cell differentiation (ortholog); ASSOCIATED WITH myoepithelioma (ortholog); Stomach Neoplasms (ortholog); transient neonatal diabetes mellitus 1 (ortholog); FOUND IN nuclear body (ortholog) NW_004955436 16452797 16511872 + 102005503 AGCD01033919;AGCD01033920;GBBH01224118;XM_013516703 XP_013372157 MODEL 8789766 protein-coding LOC102006540 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C-like NW_004955406 38984291 38988524 - 102006540 AGCD01006616;AGCD01006617;GBDF01005693;GBDK01309458;XM_013503363 XP_013358817 MODEL 8897290 protein-coding Ppp6c protein phosphatase 6 catalytic subunit ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN negative regulation of cGAS/STING signaling pathway (ortholog); protein dephosphorylation (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); melanoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955419 3096882 3133590 + 102015845 AGCD01019705;AGCD01019706;AGCD01019707;GBDF01005066;XM_005382467;XM_005382468 XP_005382524;XP_005382525 MODEL 8841658 pseudo LOC102023389 40S ribosomal protein S29-like NW_004955435 12512261 12513208 - 102023389 AGCD01033149 MODEL 8770728 pseudo LOC102026195 prostaglandin E synthase 3 pseudogene NW_004955411 26287802 26288889 + 102026195 AGCD01012178 MODEL 8900029 ncrna LOC102011056 uncharacterized LOC102011056 NW_004955443 9637905 9651098 + 102011056 AGCD01038358;GBDF01014410;XR_262200;XR_262201 MODEL 8751301 protein-coding LOC102021665 complement C5 NW_004955419 6999448 7096842 + 102021665 AGCD01019868;AGCD01019869;AGCD01019870;AGCD01019871;AGCD01019872;AGCD01019873;GBDK01083338;XM_005382580 XP_005382637 MODEL 8803842 protein-coding Pars2 prolyl-tRNA synthetase 2, mitochondrial ASSOCIATED WITH developmental and epileptic encephalopathy 75 (ortholog); genetic disease (ortholog); myoepithelioma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955464 4616137 4628873 + 102025772 AGCD01049992;GBCQ01179138;XM_005398513;XM_005398514;XM_005398516;XM_013521704;XM_013521705;XM_013521706;XM_013521707 XP_005398570;XP_005398571;XP_005398573;XP_013377158;XP_013377159;XP_013377160;XP_013377161 MODEL 8823046 pseudo LOC102028538 protein SSX7-like NW_004955482 5978717 5999037 - 102028538 AGCD01057360;AGCD01057361;AGCD01057362;AGCD01057363 MODEL 8883542 protein-coding Prpf19 pre-mRNA processing factor 19 ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-ubiquitin ligase activity (ortholog); INVOLVED IN DNA damage checkpoint signaling (ortholog); double-strand break repair via nonhomologous end joining (ortholog); inner cell mass cell proliferation (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Disease Progression (ortholog); genetic disease (ortholog); Hydrops Fetalis (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); DNA replication factor A complex (ortholog) NW_004955511 5546212 5552368 - 102003266 AGCD01066568;GBDF01006561;GBDI01004319;XM_005408116 XP_005408173 MODEL 9007944 ncrna LOC102017577 uncharacterized LOC102017577 NW_004955421 601934 608748 - 102017577 AGCD01021568;GBDF01217090;XR_001233853 MODEL 8816075 protein-coding Serpinb1 serpin family B member 1 ENCODES a protein that exhibits peptidase inhibitor activity (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN cellular homeostasis (ortholog); inflammatory response (ortholog); negative regulation of cell migration (ortholog); FOUND IN cytolytic granule (ortholog); cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog) NW_004955465 10541562 10551417 + 102025988 AGCD01050510;GBDI01218214;XM_005398929 XP_005398986 MODEL 9010540 protein-coding Trim16 tripartite motif containing 16 ENCODES a protein that exhibits DNA binding (ortholog); interleukin-1 binding (ortholog); NACHT domain binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); positive regulation of interleukin-1 beta production (ortholog); positive regulation of keratinocyte differentiation (ortholog); ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); PML body (ortholog) NW_004955467 2059793 2084221 + 102018703 AGCD01051300;GBCE01172297;XM_005399325 XP_005399382 MODEL 8948569 protein-coding Wasf2 WASP family member 2 ENCODES a protein that exhibits protein kinase A binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament-based movement (ortholog); ameboidal-type cell migration (ortholog); PARTICIPATES IN E-cadherin signaling pathway; platelet-derived growth factor signaling pathway; FOUND IN basolateral plasma membrane (ortholog); cell-cell junction (ortholog); early endosome (ortholog) NW_004955452 6658854 6733964 - 102004775 AGCD01044118;AGCD01044119;AGCD01044120;AGCD01044121;AGCD01044122;AGCD01044123;AGCD01044124;GBCE01074273;XM_005394909;XM_013519649 XP_005394966;XP_013375103 MODEL 9018878 ncrna LOC102015664 uncharacterized LOC102015664 NW_004955437 9780174 9790963 - 102015664 AGCD01034543;GBDF01120701;XR_261871;XR_261872 MODEL 8920851 protein-coding Sde2 spliceosome associated SDE2 ENCODES a protein that exhibits damaged DNA binding (ortholog); snoRNA binding (ortholog); INVOLVED IN cellular response to UV (ortholog); endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); mitotic G1 DNA damage checkpoint signaling (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955489 181425 210966 - 102009286 AGCD01059783;AGCD01059784;AGCD01059785;GBDF01044042;XM_005404490 XP_005404547 MODEL 9012186 pseudo LOC102025816 translation initiation factor IF-2, mitochondrial-like NW_004955424 15769513 15793267 + 102025816 AGCD01024726;AGCD01024727;AGCD01024728;AGCD01024729 MODEL 9053976 protein-coding Thbd thrombomodulin ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN female pregnancy (ortholog); negative regulation of blood coagulation (ortholog); response to cAMP (ortholog); PARTICIPATES IN protein C anticoagulant pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Liver Failure (ortholog); Acute Lung Injury (ortholog); FOUND IN apicolateral plasma membrane (ortholog); cell surface (ortholog); external side of plasma membrane (ortholog) NW_004955415 30222830 30226406 - 102029285 AGCD01016660;GBCC01028598;XM_005380959 XP_005381016 MODEL 10277283 ncrna LOC106147075 uncharacterized LOC106147075 NW_004955516 3518591 3522860 + 106147075 AGCD01067494;GBCB01089270;XR_001231805;XR_001231806 MODEL 9054309 protein-coding Elp6 elongator acetyltransferase complex subunit 6 INVOLVED IN apoptotic process (ortholog); autophagosome maturation (ortholog); autophagy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); elongator holoenzyme complex (ortholog) NW_004955420 24795416 24807790 + 102013177 AGCD01021332;AGCD01021333;GBDF01253292;XM_005383396;XM_005383397;XM_005383398;XM_005383399 XP_005383453;XP_005383454;XP_005383455;XP_005383456 MODEL 8832531 protein-coding Top2a DNA topoisomerase II alpha ENCODES a protein that exhibits ATP binding (ortholog); ATP-dependent activity, acting on DNA (ortholog); chromatin binding (ortholog); INVOLVED IN apoptotic chromosome condensation (ortholog); cerebellar granule cell differentiation (ortholog); cerebellar Purkinje cell differentiation (ortholog); PARTICIPATES IN doxorubicin pharmacodynamics pathway; etoposide pharmacodynamics pathway; etoposide pharmacokinetics pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); adenoid cystic carcinoma (ortholog); adrenocortical carcinoma (ortholog); FOUND IN centriole (ortholog); chromosome, centromeric region (ortholog); condensed chromosome (ortholog) NW_004955451 14928273 14964855 - 102021727 AGCD01043584;AGCD01043585;AGCD01043586;AGCD01043587;AGCD01043588;AGCD01043589;GBBH01012210;GBDI01224195;XM_013519327 XP_013374781 MODEL 8931097 ncrna LOC102009527 uncharacterized LOC102009527 NW_004955429 19955225 19971743 - 102009527 AGCD01028974;AGCD01028975;XR_001234478;XR_261368 MODEL 8871171 pseudo LOC102008418 40S ribosomal protein S13 pseudogene NW_004955485 7336794 7337638 - 102008418 AGCD01058654;XM_005403816 MODEL 8828714 pseudo LOC102005452 protein kinase C iota type pseudogene NW_004955411 3980164 3982123 - 102005452 AGCD01011566 MODEL 8838468 protein-coding Rictor RPTOR independent companion of MTOR complex 2 ENCODES a protein that exhibits ATP binding (ortholog); enzyme-substrate adaptor activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); embryo development ending in birth or egg hatching (ortholog); lipid biosynthetic process (ortholog); PARTICIPATES IN mTOR signaling pathway; phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH breast ductal carcinoma (ortholog); colon cancer (ortholog); colorectal adenocarcinoma (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); lysosomal membrane (ortholog) NW_004955426 23468112 23582587 - 102020032 AGCD01026644;AGCD01026645;AGCD01026646;GBDJ01139466;XM_005386229;XM_005386232;XM_013514942;XM_013514943;XM_013514945;XM_013514946;XM_013514947;XM_013514948;XM_013514949 XP_005386286;XP_005386289;XP_013370396;XP_013370397;XP_013370399;XP_013370400;XP_013370401;XP_013370402;XP_013370403 MODEL 8850729 protein-coding LOC102010298 liver carboxylesterase 1 NW_004955433 13504228 13538598 - 102010298 AGCD01031693;AGCD01031694;AGCD01031695;GBBH01016309;XM_005388336;XM_013516222 XP_005388393;XP_013371676 MODEL 8743316 ncrna LOC102027197 uncharacterized LOC102027197 NW_004955422 18355100 18371061 + 102027197 AGCD01022946;GBCE01047391;XR_001234002;XR_001234003;XR_001234004;XR_001234005;XR_001234006;XR_260893 MODEL 8740923 protein-coding Rtn1 reticulon 1 INVOLVED IN negative regulation of amyloid-beta formation (ortholog); neuron differentiation (ortholog); ASSOCIATED WITH Myocardial Ischemia (ortholog); FOUND IN dendrite (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955466 13290419 13454387 - 102009815 AGCD01051156;AGCD01051157;AGCD01051158;AGCD01051159;AGCD01051160;GBBH01063056;XM_013522002 XP_013377456 MODEL 8963910 protein-coding Brf1 BRF1 general transcription factor IIIB subunit INVOLVED IN positive regulation of transcription by RNA polymerase III (ortholog); regulation of mRNA stability (ortholog); PARTICIPATES IN histone modification pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Cardiomegaly (ortholog); cerebellofaciodental syndrome (ortholog) NW_004955538 3469322 3544704 - 102005507 AGCD01071164;AGCD01071165;AGCD01071166;AGCD01071167;AGCD01071168;AGCD01071169;GBCB01026253;GBDI01136185;XM_005410860 XP_005410917 MODEL 8999705 ncrna LOC102019134 uncharacterized LOC102019134 NW_004955405 28220948 28224636 + 102019134 AGCD01005233;GBDF01177491;XR_259406 MODEL 8925241 protein-coding LOC102027876 melanoma-associated antigen 10-like NW_004955498 5604403 5614713 - 102027876 AGCD01063085;AGCD01063086;AGCD01063087;GBDF01162554;XM_005406413;XM_013505540 XP_005406470;XP_013360994 MODEL 8771327 protein-coding LOC102030341 prorelaxin-like NW_004955434 9397123 9401768 - 102030341 AGCD01032299;XM_005388658 XP_005388715 MODEL 8982295 ncrna LOC102006897 uncharacterized LOC102006897 NW_004955469 7416386 7428166 + 102006897 AGCD01052415;GBDF01307558;XR_263435 MODEL 8721472 protein-coding LOC102024400 olfactory receptor 15-like NW_004955581 637852 638793 - 102024400 AGCD01075684;XM_013509726 XP_013365180 MODEL 8712491 protein-coding Rabac1 Rab acceptor 1 ENCODES a protein that exhibits GTPase binding (ortholog); identical protein binding (ortholog); proline-rich region binding (ortholog); ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); Golgi apparatus (ortholog) NW_004955555 897927 900406 + 102005848 AGCD01073051;GBDF01002277;XM_005412402 XP_005412459 MODEL 8716819 protein-coding Prpf3 pre-mRNA processing factor 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal tri-snRNP complex assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); retinitis pigmentosa (ortholog); FOUND IN Cajal body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955413 429259 455449 - 102015301 AGCD01013465;AGCD01013466;AGCD01013467;AGCD01013468;GBDK01133619;XM_005378686;XM_005378687;XR_001232982 XP_005378743;XP_005378744 MODEL 8845859 protein-coding Lhfpl3 LHFPL tetraspan subfamily member 3 ASSOCIATED WITH Breast Cancer, Familial (ortholog) NW_004955410 9121854 9633760 + 102019149 AGCD01010759;AGCD01010760;AGCD01010761;AGCD01010762;AGCD01010763;AGCD01010764;AGCD01010765;AGCD01010766;AGCD01010767;AGCD01010768;GBCQ01019245;XM_005377238;XM_005377239 XP_005377295;XP_005377296 MODEL 8965289 pseudo LOC102010691 nudC domain-containing protein 2-like NW_004955475 11122125 11122610 - 102010691 AGCD01055143 MODEL 8771358 pseudo LOC102006542 insulin-like growth factor 2 mRNA-binding protein 2 NW_004955407 20470335 20479986 - 102006542 AGCD01007330 MODEL 8820002 protein-coding Slc45a2 solute carrier family 45 member 2 ENCODES a protein that exhibits D-glucose:proton symporter activity (ortholog); sucrose:proton symporter activity (ortholog); INVOLVED IN developmental pigmentation (ortholog); lysosomal lumen pH elevation (ortholog); melanin biosynthetic process from tyrosine (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita-4 (ortholog); basal cell carcinoma (ortholog); genetic disease (ortholog); FOUND IN melanosome membrane (ortholog) NW_004955426 19498942 19530628 - 102027881 AGCD01026547;GBDF01043012;XM_005386166;XM_005386167;XM_013514938;XM_013514939 XP_005386223;XP_005386224;XP_013370392;XP_013370393 MODEL 8954796 protein-coding Pde4b phosphodiesterase 4B ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); calcium channel regulator activity (ortholog); cAMP binding (ortholog); INVOLVED IN cellular response to epinephrine stimulus (ortholog); cellular response to lipopolysaccharide (ortholog); cellular response to xenobiotic stimulus (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); alcohol dependence (ortholog); alcohol use disorder (ortholog); FOUND IN cell periphery (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955423 24464503 24906409 - 102021568 AGCD01024036;AGCD01024037;AGCD01024038;AGCD01024039;AGCD01024040;AGCD01024041;AGCD01024042;AGCD01024043;AGCD01024044;AGCD01024045;AGCD01024046;GBCB01058791;XM_005385294;XM_005385295;XM_005385297;XM_005385298 XP_005385351;XP_005385352;XP_005385354;XP_005385355 MODEL 626189191 snorna SNORA35B small nucleolar RNA, H/ACA box 35B 9024563 ncrna LOC102027877 uncharacterized LOC102027877 NW_004955425 19890110 19966806 + 102027877 AGCD01025704;AGCD01025705;AGCD01025706;AGCD01025707;AGCD01025708;GBDF01220742;XR_001234294;XR_261156;XR_261157 MODEL 9030056 protein-coding LOC102018726 uncharacterized LOC102018726 NW_004955478 10841511 10868929 - 102018726 AGCD01056152;GBDF01195145;XM_005402275;XM_013503217;XR_001230851;XR_001230852;XR_001230853 XP_005402332;XP_013358671 MODEL 8763197 protein-coding LOC102023391 trace amine-associated receptor 4-like NW_004955436 13158822 13159865 - 102023391 AGCD01033854;XM_005389214 XP_005389271 MODEL 39133516 snorna U3 Small nucleolar RNA U3 8756732 protein-coding LOC102005453 olfactory receptor 8D1-like NW_004955412 25120340 25121215 - 102005453 AGCD01013135;XM_013511250 XP_013366704 MODEL 8785946 protein-coding LOC102021666 uncharacterized LOC102021666 NW_004955419 27619572 27626303 + 102021666 AGCD01020444;GBCE01016841;XM_013513108 XP_013368562 MODEL 8872874 protein-coding LOC102012689 keratin, type II cytoskeletal 73 NW_004955547 3011391 3021597 - 102012689 AGCD01072303;GBCB01047840;XM_005411952;XM_005411953 XP_005412009;XP_005412010 MODEL 9017220 protein-coding Smad5 SMAD family member 5 ENCODES a protein that exhibits DEAD/H-box RNA helicase binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN anti-Mullerian hormone receptor signaling pathway (ortholog); BMP signaling pathway (ortholog); bone development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH Cocaine-Related Disorders (ortholog); granulosa cell tumor (ortholog); Testicular Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955408 31183727 31228355 + 102014874 AGCD01008822;AGCD01008823;GBCE01108524;XM_013506828 XP_013362282 MODEL 9000862 protein-coding Snrpa1 small nuclear ribonucleoprotein polypeptide A' INVOLVED IN mRNA splicing, via spliceosome (ortholog); spermatogenesis (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH connective tissue disease (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear body (ortholog); nuclear speck (ortholog) NW_004955416 28166885 28178404 - 102010799 AGCD01017626;GBDJ01141602;XM_005381647 XP_005381704 MODEL 8985698 protein-coding Pum3 pumilio RNA binding family member 3 FOUND IN chromosome (ortholog); endoplasmic reticulum (ortholog); nucleolus (ortholog) NW_004955434 7208319 7245324 - 102019197 AGCD01032231;GBDK01357572;XM_005388614;XM_005388615;XM_013516375 XP_005388671;XP_005388672;XP_013371829 MODEL 8755629 protein-coding Parva parvin alpha ENCODES a protein that exhibits actin binding (ortholog); protein kinase inhibitor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament bundle assembly (ortholog); actin filament network formation (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955414 27813745 27960743 + 102014554 AGCD01015664;AGCD01015665;AGCD01015666;AGCD01015667;AGCD01015668;AGCD01015669;AGCD01015670;AGCD01015671;GBBH01100660;XM_005380302 XP_005380359 MODEL 8839556 protein-coding LOC102003701 vomeronasal type-1 receptor 1-like NW_004955558 687163 688056 + 102003701 AGCD01073385;XM_005412741 XP_005412798 MODEL 8985858 protein-coding Psmd5 proteasome 26S subunit, non-ATPase 5 INVOLVED IN proteasome regulatory particle assembly (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome regulatory particle, base subcomplex (ortholog) NW_004955419 7199549 7221431 + 102025008 AGCD01019875;GBBH01025438;XM_005382593 XP_005382650 MODEL 39131483 protein-coding THBD thrombomodulin 8829544 protein-coding Ppp6r1 protein phosphatase 6 regulatory subunit 1 ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); small GTPase binding (ortholog); FOUND IN cytosol (ortholog); lamellipodium (ortholog) NW_004955567 966483 985692 + 102030486 AGCD01074450;GBCQ01065625;XM_013509240;XM_013509241;XM_013509242 XP_013364694;XP_013364695;XP_013364696 MODEL 10093921 pseudo LOC106147077 T-cell immunomodulatory protein-like NW_004955516 685366 686407 - 106147077 AGCD01067394;AGCD01067395 MODEL 8832308 protein-coding LOC102011445 translation initiation factor IF-2-like NW_004955418 844476 848795 + 102011445 AGCD01018691;GBDF01112395;XM_005382047 XP_005382104 MODEL 8809006 protein-coding LOC102006544 cytochrome b-c1 complex subunit 8 INVOLVED IN cerebellar Purkinje cell layer development (ortholog); hippocampus development (ortholog); hypothalamus development (ortholog); ASSOCIATED WITH mitochondrial complex III deficiency nuclear type 1 (ortholog); mitochondrial complex III deficiency nuclear type 4 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex III (ortholog) NW_004955408 4240072 4241342 + 102006544 AGCD01008099;GBDF01003550;XM_005376118;XM_005376119 XP_005376175;XP_005376176 MODEL 8794002 protein-coding Elspbp1 epididymal sperm binding protein 1 NW_004955609 227424 241987 - 102011266 AGCD01077054;XM_005414929;XM_013510121 XP_005414986;XP_013365575 MODEL 10240834 ncrna LOC106148170 uncharacterized LOC106148170 NW_004955403 18551650 18553024 + 106148170 AGCD01002102;GBDF01078042;XR_001233377 MODEL 8707874 ncrna LOC102010301 uncharacterized LOC102010301 NW_004955524 791217 792333 + 102010301 AGCD01068708;GBDF01013580;XR_001231946 MODEL 9061677 protein-coding Reln reelin ENCODES a protein that exhibits lipoprotein particle receptor binding (ortholog); receptor ligand activity (ortholog); serine-type peptidase activity (ortholog); INVOLVED IN associative learning (ortholog); axon guidance (ortholog); brain development (ortholog); PARTICIPATES IN altered Reelin signaling pathway; Reelin signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Ataxia (ortholog); autism spectrum disorder (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955410 8424439 8863966 - 102018268 AGCD01010746;AGCD01010747;AGCD01010748;AGCD01010749;AGCD01010750;AGCD01010751;AGCD01010752;AGCD01010753;GBCE01089394;XM_005377235;XM_005377236 XP_005377292;XP_005377293 MODEL 8740112 pseudo LOC102017578 non-histone chromosomal protein HMG-14 pseudogene NW_004955487 651945 652237 + 102017578 AGCD01059224 MODEL 8848991 protein-coding Slc10a7 solute carrier family 10 member 7 INVOLVED IN bone development (ortholog); heparin proteoglycan biosynthetic process (ortholog); intracellular calcium ion homeostasis (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955428 1999341 2250201 - 102010606 AGCD01027627;AGCD01027628;AGCD01027629;AGCD01027630;AGCD01027631;GBDI01357674;XM_005386663;XM_013515325;XM_013515326 XP_005386720;XP_013370779;XP_013370780 MODEL 10246395 ncrna LOC106149916 uncharacterized LOC106149916 NW_004955457 515882 533018 - 106149916 AGCD01046711;XR_001236381 MODEL 8904491 pseudo LOC102005454 lupus La protein homolog pseudogene NW_004955412 30675648 30678489 + 102005454 AGCD01013305 MODEL 8907127 protein-coding Pou4f3 POU class 4 homeobox 3 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN axon extension (ortholog); inner ear auditory receptor cell differentiation (ortholog); inner ear development (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 15 (ortholog); Deafness (ortholog); Hearing Loss (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955415 7777296 7778622 - 102016049 AGCD01016056;XM_005380674 XP_005380731 MODEL 9026608 pseudo LOC102024405 60S ribosomal protein L39 pseudogene NW_004955402 38749901 38750123 + 102024405 AGCD01000967;XM_005372945 MODEL 8870031 protein-coding Serpinb11 serpin family B member 11 NW_004955402 47564631 47585486 + 102025638 AGCD01001191;GBBH01001457;XM_005373034 XP_005373091 MODEL 8877003 protein-coding Smad6 SMAD family member 6 ENCODES a protein that exhibits chromatin binding (ortholog); co-SMAD binding (ortholog); I-SMAD binding (ortholog); INVOLVED IN aorta development (ortholog); aortic valve morphogenesis (ortholog); BMP signaling pathway (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH aortic disease (ortholog); aortic valve disease 1 (ortholog); aortic valve disease 2 (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955450 9005332 9070790 - 102005761 AGCD01042582;AGCD01042583;AGCD01042584;GBBH01208531;GBCE01045102;XM_013519026 XP_013374480 MODEL 8859862 protein-coding Sdf2 stromal cell derived factor 2 ENCODES a protein that exhibits misfolded protein binding (ortholog); INVOLVED IN protein refolding (ortholog); FOUND IN endoplasmic reticulum (ortholog); protein folding chaperone complex (ortholog) NW_004955481 4497611 4506224 + 102027642 AGCD01056942;GBCQ01068706;XM_005402738 XP_005402795 MODEL 8749418 pseudo LOC102026198 nuclear receptor coactivator 4 pseudogene NW_004955411 35912922 35918627 - 102026198 AGCD01012458 MODEL 8894359 protein-coding Lhfpl4 LHFPL tetraspan subfamily member 4 ENCODES a protein that exhibits GABA receptor binding (ortholog); INVOLVED IN gamma-aminobutyric acid receptor clustering (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); regulation of inhibitory synapse assembly (ortholog); FOUND IN GABA-ergic synapse (ortholog); inhibitory synapse (ortholog); postsynaptic membrane (ortholog) NW_004955561 1066799 1142099 - 102004126 AGCD01073829;AGCD01073830;AGCD01073831;AGCD01073832;AGCD01073833;AGCD01073834;AGCD01073835;AGCD01073836;GBDJ01123683;XM_005413016 XP_005413073 MODEL 8826608 pseudo LOC102010693 charged multivesicular body protein 1b-like NW_004955416 11825639 11828480 - 102010693 AGCD01017192 MODEL 626189198 snorna SNORA36B small nucleolar RNA, H/ACA box 36B 9055009 pseudo LOC102011060 MICOS complex subunit MIC27 pseudogene NW_004955444 6968368 6969142 - 102011060 AGCD01038884 MODEL 8834478 protein-coding LOC102009529 olfactory receptor 5A2-like NW_004955511 3917910 3918862 - 102009529 AGCD01066481;XM_013506389 XP_013361843 MODEL 8712270 ncrna LOC102023395 uncharacterized LOC102023395 NW_004955437 3132934 3153018 - 102023395 AGCD01034298;AGCD01034299;GBDI01326354;XR_001235053 MODEL 8923167 protein-coding LOC102027879 inhibitor of carbonic anhydrase-like NW_004955501 4843937 4895619 - 102027879 AGCD01064145;AGCD01064146;AGCD01064147;GBDF01163011;XM_005406810 XP_005406867 MODEL 8771794 protein-coding Slc45a3 solute carrier family 45 member 3 ENCODES a protein that exhibits sucrose:proton symporter activity (ortholog); INVOLVED IN positive regulation of fatty acid biosynthetic process (ortholog); positive regulation of glucose metabolic process (ortholog); regulation of oligodendrocyte differentiation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); teratoma (ortholog) NW_004955406 41362077 41381981 - 102010669 AGCD01006678;AGCD01006679;GBDK01319488;XM_005375364;XM_005375368;XM_013522930;XM_013522934;XM_013522936;XM_013522940;XM_013522943 XP_005375421;XP_005375425;XP_013378384;XP_013378388;XP_013378390;XP_013378394;XP_013378397 MODEL 9016419 protein-coding LOC102028891 uncharacterized LOC102028891 NW_004955524 1069165 1071503 + 102028891 AGCD01068734;GBDF01266253;XM_005409504 XP_005409561 MODEL 39133519 snorna U3 Small nucleolar RNA U3 8891497 protein-coding Rtn2 reticulon 2 INVOLVED IN gene expression (ortholog); intracellular protein transmembrane transport (ortholog); negative regulation of amyloid-beta formation (ortholog); ASSOCIATED WITH autosomal recessive distal hereditary motor neuronopathy 11 (ortholog); genetic disease (ortholog); hereditary spastic paraplegia (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955574 1543 11476 - 102013024 AGCD01075076;GBCB01006561;GBDJ01354782;XM_005413783 XP_005413840 MODEL 8744595 protein-coding Emb embigin INVOLVED IN cell adhesion (ortholog); plasma membrane lactate transport (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN plasma membrane (ortholog) NW_004955446 16716677 16757031 + 102028592 AGCD01040349;GBBH01001163;XM_005392729 XP_005392786 MODEL 9062374 pseudo LOC102015665 60S ribosomal protein L31 pseudogene NW_004955543 1071306 1071676 - 102015665 AGCD01071612 MODEL 8793200 protein-coding Brf2 BRF2 general transcription factor IIIB subunit ENCODES a protein that exhibits RNA polymerase III type 3 promoter sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); positive regulation of transcription by RNA polymerase III (ortholog); regulation of transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH prostate cancer (ortholog); FOUND IN nucleolus (ortholog); transcription factor TFIIIB complex (ortholog) NW_004955463 13549571 13553946 - 102013483 AGCD01049871;GBDJ01061574;XM_013521531 XP_013376985 MODEL 8806214 protein-coding Ppp6r2 protein phosphatase 6 regulatory subunit 2 ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 4B3 (ortholog); prostate cancer (ortholog); FOUND IN cytosol (ortholog) NW_004955413 33362879 33425361 + 102026310 AGCD01014666;AGCD01014667;AGCD01014668;AGCD01014669;GBCB01002220;XM_005379557;XM_005379558;XM_005379559;XM_005379560;XM_005379561;XM_013511403;XM_013511404;XM_013511405;XM_013511406;XM_013511407 XP_005379614;XP_005379615;XP_005379616;XP_005379617;XP_005379618;XP_013366857;XP_013366858;XP_013366859;XP_013366860;XP_013366861 MODEL 8751759 pseudo LOC102012691 DNA-directed RNA polymerase III subunit RPC7 pseudogene NW_004955551 615007 616795 + 102012691 AGCD01072666 MODEL 8718142 protein-coding LOC102025817 taste receptor type 2 member 1-like NW_004955504 6903932 6904825 - 102025817 AGCD01064930;XM_005407094 XP_005407151 MODEL 8965720 protein-coding Wasf3 WASP family member 3 INVOLVED IN lamellipodium assembly (ortholog); modification of postsynaptic actin cytoskeleton (ortholog); oligodendrocyte development (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); systemic juvenile rheumatoid arthritis (ortholog); FOUND IN glutamatergic synapse (ortholog); lamellipodium (ortholog); postsynapse (ortholog) NW_004955497 6100633 6190639 + 102028556 AGCD01062622;AGCD01062623;AGCD01062624;AGCD01062625;AGCD01062626;GBDF01158437;XM_005406347;XM_005406348;XM_005406349;XM_005406350 XP_005406404;XP_005406405;XP_005406406;XP_005406407 MODEL 8908789 ncrna LOC102003703 uncharacterized LOC102003703 NW_004955444 18667764 18677902 + 102003703 AGCD01039249;GBBH01195406;XR_001235492 MODEL 8863916 ncrna LOC102008419 uncharacterized LOC102008419 NW_004955420 12338859 12346661 + 102008419 AGCD01020861;GBDF01156176;XR_001233788;XR_001233789;XR_260709 MODEL 8709588 protein-coding Rabep1 rabaptin, RAB GTPase binding effector protein 1 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN Golgi to plasma membrane transport (ortholog); protein localization to ciliary membrane (ortholog); regulation of postsynaptic neurotransmitter receptor internalization (ortholog); ASSOCIATED WITH teratoma (ortholog); FOUND IN cytosol (ortholog); endocytic vesicle (ortholog); endosome (ortholog) NW_004955467 10613671 10748122 + 102026623 AGCD01051578;AGCD01051579;AGCD01051580;AGCD01051581;AGCD01051582;AGCD01051583;GBDF01156135;XM_005399641;XM_005399642 XP_005399698;XP_005399699 MODEL 8821965 protein-coding Prpf31 pre-mRNA processing factor 31 ENCODES a protein that exhibits identical protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); ribonucleoprotein complex localization (ortholog); snoRNA localization (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; spliceosome pathway; ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); Leber congenital amaurosis (ortholog); FOUND IN Cajal body (ortholog); MLL1 complex (ortholog); nuclear speck (ortholog) NW_004955604 125489 136209 - 102014515 AGCD01076864;GBDF01079967;XM_005414861;XM_005414862;XM_005414863 XP_005414918;XP_005414919;XP_005414920 MODEL 8919416 protein-coding LOC102027201 spermatogenesis-associated protein 31A3-like NW_004955422 24179300 24183284 + 102027201 AGCD01023216;GBDF01188194;XM_013513837 XP_013369291 MODEL 9035295 pseudo LOC102011448 60S ribosomal protein L5-like NW_004955419 28970094 28970946 - 102011448 AGCD01020481 MODEL 8940744 protein-coding Thbs1 thrombospondin 1 ENCODES a protein that exhibits collagen V binding (ortholog); endopeptidase inhibitor activity (ortholog); extracellular matrix binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); blood coagulation, fibrin clot formation (ortholog); blood vessel morphogenesis (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Breast Neoplasms (ortholog); Cerebral Hemorrhage (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum (ortholog); external side of plasma membrane (ortholog) NW_004955416 6490034 6506419 + 102010897 AGCD01016946;GBBH01143942;XM_013512591 XP_013368045 MODEL 8820574 protein-coding LOC102019137 bcl-2-binding component 3-like NW_004955406 10664969 10668486 - 102019137 AGCD01005868;GBCE01089598;GBCQ01113563;XM_013520537 XP_013375991 MODEL 8854509 protein-coding Trim17 tripartite motif containing 17 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN autophagy (ortholog); protein autoubiquitination (ortholog); regulation of protein localization (ortholog); FOUND IN cytoplasm (ortholog); lysosome (ortholog) NW_004955581 107251 113907 + 102011712 AGCD01075657;GBDF01052383;XM_005414229;XM_005414230;XM_005414231 XP_005414286;XP_005414287;XP_005414288 MODEL 8872828 protein-coding Plagl2 PLAG1 like zinc finger 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN chylomicron assembly (ortholog); lipid metabolic process (ortholog); positive regulation of intrinsic apoptotic signaling pathway (ortholog); FOUND IN nucleus (ortholog) NW_004955422 28839021 28847255 + 102010704 AGCD01023372;GBCB01076356;GBDI01219915;XM_005384877 XP_005384934 MODEL 9035641 ncrna LOC102021667 uncharacterized LOC102021667 NW_004955485 5568877 5574178 + 102021667 AGCD01058597;GBDF01042208;XR_263907 MODEL 10081596 ncrna LOC106148171 uncharacterized LOC106148171 NW_004955402 380148 384103 - 106148171 AGCD01000017;GBCB01110812;XR_001233388 MODEL 8993911 protein-coding LOC102030342 cytochrome b561 domain-containing protein 1 NW_004955435 12913452 12918976 + 102030342 AGCD01033174;GBDI01007233;XM_005388866;XM_005388868;XM_005388869 XP_005388923;XP_005388925;XP_005388926 MODEL 8748328 pseudo LOC102017579 elongation factor 1-beta-like NW_004955489 9292062 9293395 + 102017579 AGCD01060035 MODEL 9034241 ncrna LOC102028893 uncharacterized LOC102028893 NW_004955437 6332056 6339709 + 102028893 AGCD01034431;AGCD01034432;AGCD01034433;GBBH01078729;XR_001235023;XR_261863 MODEL 8942585 protein-coding Slc11a1 solute carrier family 11 member 1 ENCODES a protein that exhibits iron ion transmembrane transporter activity (ortholog); magnesium ion transmembrane transporter activity (ortholog); manganese ion transmembrane transporter activity (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); antigen processing and presentation of peptide antigen (ortholog); cadmium ion transmembrane transport (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); asthma (ortholog); atopic dermatitis (ortholog); FOUND IN endosome membrane (ortholog); late endosome (ortholog); late endosome membrane (ortholog) NW_004955453 14980562 14995118 - 102011273 AGCD01044879;AGCD01044880;GBDF01008960;XM_005395650;XM_005395651;XM_013519872;XM_013519873;XM_013519874;XM_013519875;XM_013519876 XP_005395707;XP_005395708;XP_013375326;XP_013375327;XP_013375328;XP_013375329;XP_013375330 MODEL 8959268 protein-coding Rassf2 Ras association domain family member 2 ENCODES a protein that exhibits protein kinase activity (ortholog); INVOLVED IN bone remodeling (ortholog); canonical NF-kappaB signal transduction (ortholog); homeostasis of number of cells (ortholog); ASSOCIATED WITH Lymphatic Metastasis (ortholog); Nasopharyngeal Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); kinetochore (ortholog) NW_004955415 15500726 15542939 - 102008844 AGCD01016346;AGCD01016347;AGCD01016348;AGCD01016349;GBDI01218507;XM_005380820;XM_013512321;XM_013512322;XM_013512323;XM_013512324;XM_013512325;XM_013512326 XP_005380877;XP_013367775;XP_013367776;XP_013367777;XP_013367778;XP_013367779;XP_013367780 MODEL 8741272 protein-coding LOC102028540 formin-like protein 1 NW_004955482 5970196 5970764 - 102028540 AGCD01057359;XM_013503536 XP_013358990 MODEL 8948910 protein-coding Parvb parvin beta INVOLVED IN actin cytoskeleton organization (ortholog); establishment or maintenance of cell polarity regulating cell shape (ortholog); lamellipodium assembly (ortholog); PARTICIPATES IN integrin mediated signaling pathway; FOUND IN actin cytoskeleton (ortholog); focal adhesion (ortholog); lamellipodium (ortholog) NW_004955413 28962614 29020430 + 102021228 AGCD01014573;GBCQ01121909;XM_005379454 XP_005379511 MODEL 8979433 protein-coding Pde4c phosphodiesterase 4C ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); INVOLVED IN negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; FOUND IN cilium (ortholog) NW_004955524 3199534 3218013 + 102020278 AGCD01068867;GBCQ01169107;XM_013507254;XM_013507255;XM_013507256;XM_013507257;XM_013507258;XM_013507259;XM_013507260;XM_013507261 XP_013362708;XP_013362709;XP_013362710;XP_013362711;XP_013362712;XP_013362713;XP_013362714;XP_013362715 MODEL 8829011 protein-coding Psmd6 proteasome 26S subunit, non-ATPase 6 ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog) NW_004955517 1874874 1886480 + 102017692 AGCD01067609;AGCD01067610;GBDF01002254;XM_005409021 XP_005409078 MODEL 9007780 protein-coding Rida reactive intermediate imine deaminase A ENCODES a protein that exhibits 2-iminobutanoate deaminase activity (ortholog); 2-iminopropanoate deaminase activity (ortholog); cation binding (ortholog); INVOLVED IN G1 to G0 transition (ortholog); kidney development (ortholog); lung development (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); Experimental Liver Cirrhosis (ortholog); Experimental Liver Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial matrix (ortholog) NW_004955417 13810596 13822982 - 102010482 AGCD01018191;GBDJ01312104;XM_005381848 XP_005381905 MODEL 8846606 protein-coding LOC102018733 uncharacterized LOC102018733 NW_004955420 25222759 25231032 - 102018733 AGCD01021347;GBBH01116817;XM_005383418;XR_001233696;XR_260751 XP_005383475 MODEL 8824698 protein-coding Top2b DNA topoisomerase II beta ENCODES a protein that exhibits chromatin binding (ortholog); DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN axonogenesis (ortholog); B cell differentiation (ortholog); cellular response to ATP (ortholog); PARTICIPATES IN doxorubicin pharmacodynamics pathway; doxorubicin response pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); B-Cell Immunodeficiency, Distal Limb Anomalies, and Urogenital Malformations (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); heterochromatin (ortholog); nucleolus (ortholog) NW_004955430 17457603 17523115 - 102012788 AGCD01029657;AGCD01029658;AGCD01029659;AGCD01029660;AGCD01029661;AGCD01029662;GBCE01117472;GBDI01076437;XM_005387486 XP_005387543 MODEL 8704748 protein-coding Serpinb12 serpin family B member 12 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); FOUND IN cornified envelope (ortholog) NW_004955402 47338874 47361485 + 102024072 AGCD01001180;GBDI01178459;XM_005373030 XP_005373087 MODEL 8715506 protein-coding LOC102010697 olfactory receptor 2L3-like NW_004955418 30109107 30110042 + 102010697 AGCD01019503;XM_005382366 XP_005382423 MODEL 9025237 protein-coding LOC102011061 olfactory receptor 7G2-like NW_004955563 307152 309101 - 102011061 AGCD01074060;XM_013509132;XM_013509133 XP_013364586;XP_013364587 MODEL 8703970 protein-coding Sdf2l1 stromal cell derived factor 2 like 1 ENCODES a protein that exhibits ATPase binding (ortholog); misfolded protein binding (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN cellular response to misfolded protein (ortholog); ERAD pathway (ortholog); protein refolding (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH Crohn's disease (ortholog); Prostatic Neoplasms (ortholog); Spontaneous Abortions (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum chaperone complex (ortholog); membrane (ortholog) NW_004955442 17468302 17470296 - 102015353 AGCD01037955;GBCB01077176;XM_005391702 XP_005391759 MODEL 8810390 ncrna LOC102006898 uncharacterized LOC102006898 NW_004955414 6093328 6094333 - 102006898 AGCD01014908;GBBH01201308;XR_260154 MODEL 8801248 pseudo LOC102010302 glutathione S-transferase Mu 1-like NW_004955435 13225086 13240501 + 102010302 AGCD01033197;AGCD01033198;AGCD01033199 MODEL 8998209 pseudo LOC102019143 ubiquitin-60S ribosomal protein L40 pseudogene NW_004955407 36420998 36445058 - 102019143 AGCD01007767;AGCD01007768 MODEL 8987086 protein-coding Relt RELT TNF receptor INVOLVED IN amelogenesis (ortholog); apoptotic process (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 3C (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955414 18074487 18104972 - 102016465 AGCD01015268;AGCD01015269;AGCD01015270;GBDK01307406;XM_005379952;XM_005379953;XM_005379954;XM_013511811 XP_005380009;XP_005380010;XP_005380011;XP_013367265 MODEL 8741306 protein-coding Rtn3 reticulon 3 INVOLVED IN endoplasmic reticulum tubular network formation (ortholog); endoplasmic reticulum tubular network organization (ortholog); negative regulation of amyloid-beta formation (ortholog); ASSOCIATED WITH chronic kidney disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); glutamatergic synapse (ortholog) NW_004955422 21289652 21358865 - 102029871 AGCD01023114;AGCD01023115;AGCD01023116;GBDF01082603;XM_005384670;XM_013514093;XM_013514094;XM_013514095 XP_005384727;XP_013369547;XP_013369548;XP_013369549 MODEL 8954275 ncrna LOC102005457 uncharacterized LOC102005457 NW_004955413 21113074 21147758 + 102005457 AGCD01014246;AGCD01014247;GBBH01122379;XR_001232964;XR_001232965;XR_001232966 MODEL 8855012 protein-coding Bri3 brain protein I3 ENCODES a protein that exhibits identical protein binding (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955460 14165874 14174464 + 102029053 AGCD01048742;GBDF01045177;GBDI01000286;XM_013521167 XP_013376621 MODEL 8940806 protein-coding Emc1 ER membrane protein complex subunit 1 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); ASSOCIATED WITH cerebellar atrophy, visual impairment, and psychomotor retardation (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN EMC complex (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955527 19069 45951 + 102014484 AGCD01069371;AGCD01069372;GBDF01001898;XM_005409788;XM_005409789 XP_005409845;XP_005409846 MODEL 8830969 protein-coding Pou5f1 POU class 5 homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN blastocyst development (ortholog); blastocyst growth (ortholog); BMP signaling pathway (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH amphetamine abuse (ortholog); Carcinogenesis (ortholog); congenital heart disease (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955583 995707 1003202 - 102026057 AGCD01075876;GBDF01041047;XM_005414337;XM_013509821;XM_013509822 XP_005414394;XP_013365275;XP_013365276 MODEL 8897662 protein-coding Ppp6r3 protein phosphatase 6 regulatory subunit 3 ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955422 17247133 17387870 - 102030325 AGCD01022917;AGCD01022918;AGCD01022919;AGCD01022920;AGCD01022921;GBCE01096047;XM_005384268;XM_005384269;XM_005384270;XM_005384271;XM_005384272;XM_005384273;XM_005384275;XM_005384276;XM_005384277;XM_013514098;XM_013514100;XM_013514101 XP_005384325;XP_005384326;XP_005384327;XP_005384328;XP_005384329;XP_005384330;XP_005384332;XP_005384333;XP_005384334;XP_013369552;XP_013369554;XP_013369555 MODEL 10207227 ncrna LOC106147078 uncharacterized LOC106147078 NW_004955408 33677059 33867164 + 106147078 AGCD01008879;AGCD01008880;AGCD01008881;AGCD01008882;AGCD01008883;AGCD01008884;AGCD01008885;AGCD01008886;AGCD01008887;GBDF01238133;XR_001231808 MODEL 8907025 protein-coding Smad7 SMAD family member 7 ENCODES a protein that exhibits activin receptor binding (ortholog); beta-catenin binding (ortholog); collagen binding (ortholog); INVOLVED IN adherens junction assembly (ortholog); artery morphogenesis (ortholog); beta-catenin destruction complex disassembly (ortholog); PARTICIPATES IN altered transforming growth factor-beta Smad dependent signaling pathway; Bone morphogenetic proteins signaling pathway; colorectal cancer pathway; ASSOCIATED WITH atrial fibrillation (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN adherens junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955402 34028184 34058949 - 102010756 AGCD01000845;AGCD01000846;AGCD01000847;AGCD01000848;GBBH01052099;GBDK01074940;XM_013510569 XP_013366023 MODEL 8858528 ncrna LOC102008426 uncharacterized LOC102008426 NW_004955493 5730211 5734272 - 102008426 AGCD01061075;GBCQ01114580;XR_001231278;XR_264085 MODEL 8867093 pseudo LOC102006547 lupus La protein pseudogene NW_004955458 8690267 8691504 + 102006547 AGCD01047620 MODEL 8755780 pseudo LOC102023396 cyclin-G1 pseudogene NW_004955536 1334545 1336528 + 102023396 AGCD01070756 MODEL 8897601 ncrna LOC102027882 uncharacterized LOC102027882 NW_004955427 2813461 2830563 + 102027882 AGCD01026905;GBDF01304948;XR_261224 MODEL 8883865 pseudo LOC102011451 uncharacterized LOC102011451 NW_004955421 28537400 28548971 - 102011451 AGCD01022331 MODEL 39131571 protein-coding PURA purine rich element binding protein A 39133676 snorna U3 Small nucleolar RNA U3 8977401 protein-coding Slc46a1 solute carrier family 46 member 1 ENCODES a protein that exhibits folic acid transmembrane transporter activity (ortholog); folic acid:proton symporter activity (ortholog); heme transmembrane transporter activity (ortholog); INVOLVED IN folate import across plasma membrane (ortholog); folate transmembrane transport (ortholog); folic acid transport (ortholog); PARTICIPATES IN altered folate cycle metabolic pathway; folate cycle metabolic pathway; folate metabolic pathway; ASSOCIATED WITH anemia (ortholog); chronic kidney disease (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog) NW_004955481 4735325 4741810 + 102004814 AGCD01056950;GBDK01190488;XM_005402755 XP_005402812 MODEL 9067218 protein-coding LOC102024406 histone H3-like centromeric protein CSE4 NW_004955589 479165 495697 - 102024406 AGCD01076173;XM_005414584 XP_005414641 MODEL 8966539 protein-coding LOC102011064 transmembrane protease serine 11D NW_004955447 4999930 5082159 + 102011064 AGCD01040736;AGCD01040737;AGCD01040738;AGCD01040739;AGCD01040740;AGCD01040741;GBDI01165135;XM_013518471 XP_013373925 MODEL 9010183 protein-coding LOC102003706 WAP four-disulfide core domain protein 6A-like NW_004955445 11697127 11701399 + 102003706 AGCD01039713;GBDF01265082;XM_005392421 XP_005392478 MODEL 8741680 protein-coding LOC102017580 actin-like NW_004955422 15156081 15198900 + 102017580 AGCD01022876;GBDF01053097;XM_013513883;XM_013513884;XM_013513885 XP_013369337;XP_013369338;XP_013369339 MODEL 9016412 ncrna LOC102028544 uncharacterized LOC102028544 NW_004955485 6693150 6742507 + 102028544 AGCD01058627;GBDF01144935;XR_001231082;XR_001231083 MODEL 8787419 pseudo LOC102026201 keratin, type II cytoskeletal 8-like NW_004955467 6858657 6860126 + 102026201 AGCD01051425 MODEL 9012331 protein-coding Slc46a2 solute carrier family 46 member 2 ENCODES a protein that exhibits cyclic-GMP-AMP transmembrane transporter activity (ortholog); INVOLVED IN cyclic-GMP-AMP transmembrane import across plasma membrane (ortholog); negative regulation of T cell apoptotic process (ortholog); positive regulation of nucleotide-binding oligomerization domain containing 1 signaling pathway (ortholog); FOUND IN cell surface (ortholog); endosome membrane (ortholog); plasma membrane (ortholog) NW_004955419 14547393 14557447 + 102030424 AGCD01020028;GBDJ01084745;XM_005382700 XP_005382757 MODEL 8979789 pseudo LOC102009531 eukaryotic translation initiation factor 4B pseudogene NW_004955512 1013969 1019267 + 102009531 AGCD01066629;XR_264452 MODEL 8722054 protein-coding Prpf38a pre-mRNA processing factor 38A INVOLVED IN mRNA splicing, via spliceosome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); precatalytic spliceosome (ortholog) NW_004955464 6742200 6761059 - 102021106 AGCD01050038;GBDJ01016093;XM_005398588 XP_005398645 MODEL 8934376 protein-coding LOC102027203 olfactory receptor 8S1-like NW_004955500 7448692 7449633 - 102027203 AGCD01063924;XM_013505638 XP_013361092 MODEL 8784150 protein-coding Pde4d phosphodiesterase 4D ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-nucleotide phosphodiesterase activity (ortholog); ATPase binding (ortholog); INVOLVED IN adrenergic receptor signaling pathway (ortholog); cAMP/PKA signal transduction (ortholog); cellular response to cAMP (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH acrodysostosis (ortholog); Acrodysostosis 2, with or without Hormone Resistance (ortholog); amphetamine abuse (ortholog); FOUND IN calcium channel complex (ortholog); centrosome (ortholog); cytosol (ortholog) NW_004955446 7914326 9252527 + 102006721 AGCD01040133;AGCD01040134;AGCD01040135;AGCD01040136;AGCD01040137;AGCD01040138;AGCD01040139;AGCD01040140;AGCD01040141;AGCD01040142;AGCD01040143;AGCD01040144;AGCD01040145;AGCD01040146;AGCD01040147;AGCD01040148;AGCD01040149;AGCD01040150;AGCD01040151;AGCD01040152;AGCD01040153;AGCD01040154;AGCD01040155;AGCD01040156;AGCD01040157;GBDI01327844;XM_005392663;XM_005392664;XM_005392665;XM_005392667;XM_005392668;XM_005392669;XM_005392670;XM_013518413;XM_013518414 XP_005392720;XP_005392721;XP_005392722;XP_005392724;XP_005392725;XP_005392726;XP_005392727;XP_013373867;XP_013373868 MODEL 8738542 pseudo LOC102012693 splicing factor, proline- and glutamine-rich pseudogene NW_004955442 15809374 15820619 - 102012693 AGCD01037879;XR_262171 MODEL 8820090 pseudo LOC102030343 nuclear transcription factor Y subunit beta-like NW_004955529 3755713 3756338 + 102030343 AGCD01069801 MODEL 9047003 protein-coding Thbs2 thrombospondin 2 INVOLVED IN negative regulation of angiogenesis (ortholog); positive regulation of synapse assembly (ortholog); ASSOCIATED WITH Cerebral Hemorrhage (ortholog); diabetes mellitus (ortholog); diabetic angiopathy (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); platelet alpha granule (ortholog) NW_004955411 4315055 4347044 + 102023125 AGCD01011577;GBCE01137755;XM_005377646 XP_005377703 MODEL 8890189 protein-coding Sdf4 stromal cell derived factor 4 ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); INVOLVED IN calcium-ion regulated exocytosis (ortholog); cerebellum development (ortholog); fat cell differentiation (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); Golgi lumen (ortholog) NW_004955486 9555773 9565310 + 102028975 AGCD01059191;GBBH01002257;XM_005404249;XM_005404251;XM_013504219 XP_005404306;XP_005404308;XP_013359673 MODEL 8982157 protein-coding Trim2 tripartite motif containing 2 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH axonal neuropathy (ortholog); Charcot-Marie-Tooth disease type 2R (ortholog); osteoarthritis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955471 7523895 7698436 + 102029852 AGCD01053154;AGCD01053155;AGCD01053156;AGCD01053157;AGCD01053158;AGCD01053159;AGCD01053160;GBCQ01127466;XM_005400911;XM_005400912;XM_005400913;XM_005400914;XM_005400915;XM_005400916;XM_005400917;XM_005400918;XM_005400920;XM_005400921;XM_013522895;XM_013522896 XP_005400968;XP_005400969;XP_005400970;XP_005400971;XP_005400972;XP_005400973;XP_005400974;XP_005400975;XP_005400977;XP_005400978;XP_013378349;XP_013378350 MODEL 8834085 ncrna LOC102021670 uncharacterized LOC102021670 NW_004955486 3982324 3990407 - 102021670 AGCD01059050;GBDF01221596;XR_001231149 MODEL 8716845 protein-coding LOC102015667 olfactory receptor 4N2 NW_004955550 562632 566690 - 102015667 AGCD01072510;XM_005412033 XP_005412090 MODEL 39131451 protein-coding LHFPL5 LHFPL tetraspan subfamily member 5 10285825 ncrna LOC106149917 uncharacterized LOC106149917 NW_004955457 780625 801104 - 106149917 AGCD01046714;AGCD01046715;GBDF01099763;XR_001236382 MODEL 8892709 pseudo LOC102028895 coiled-coil domain-containing protein 152-like NW_004955538 3289351 3290444 - 102028895 AGCD01071157 MODEL 9004722 protein-coding Rtn4 reticulon 4 ENCODES a protein that exhibits cadherin binding (ortholog); lipid binding (ortholog); metal ion binding (ortholog); INVOLVED IN axonal fasciculation (ortholog); blastocyst formation (ortholog); cardiac epithelial to mesenchymal transition (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Experimental Seizures (ortholog); schizophrenia (ortholog); FOUND IN anchoring junction (ortholog); axon (ortholog); cell junction (ortholog) NW_004955424 28061346 28125838 + 102013429 AGCD01025146;AGCD01025147;GBCQ01010590;XM_013514627 XP_013370081 MODEL 8784605 protein-coding Rem1 RRAD and GEM like GTPase 1 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel (ortholog); regulation of skeletal muscle contraction by calcium ion signaling (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); FOUND IN I band (ortholog); T-tubule (ortholog) NW_004955422 29434477 29443172 - 102021886 AGCD01023394;GBDK01342980;XM_005384913 XP_005384970 MODEL 9021599 protein-coding Bri3bp BRI3 binding protein FOUND IN mitochondrion (ortholog) NW_004955482 4710937 4716534 - 102026528 AGCD01057306;GBCQ01176014;GBDF01123268;XM_013503743 XP_013359197 MODEL 8862704 pseudo LOC102024411 olfactory receptor 1571-like NW_004955626 143148 144021 + 102024411 AGCD01077469 MODEL 8708022 protein-coding Parvg parvin gamma PARTICIPATES IN integrin mediated signaling pathway NW_004955413 29028573 29046745 + 102021958 AGCD01014573;AGCD01014574;GBDI01080132;XM_005379457;XM_005379458;XM_005379459 XP_005379514;XP_005379515;XP_005379516 MODEL 8824275 pseudo LOC102018737 dnaJ homolog subfamily A member 1-like NW_004955489 1322766 1323948 - 102018737 AGCD01059836 MODEL 8914915 protein-coding Rabep2 rabaptin, RAB GTPase binding effector protein 2 INVOLVED IN regulation of cilium assembly (ortholog); ASSOCIATED WITH cocaine dependence (ortholog); myoepithelioma (ortholog); nicotine dependence (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955493 6548951 6560039 + 102014061 AGCD01061119;GBDI01005384;XM_005405161 XP_005405218 MODEL 8873090 protein-coding Psmd7 proteasome 26S subunit, non-ATPase 7 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN regulation of AMPA receptor activity (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog); proteasome regulatory particle (ortholog) NW_004955484 6824467 6832251 + 102021244 AGCD01058294;GBDF01003955;XM_005403534 XP_005403591 MODEL 9030090 protein-coding Rif1 replication timing regulatory factor 1 INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); DNA damage response (ortholog); negative regulation of double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH nemaline myopathy 2 (ortholog); FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); chromosome, telomeric repeat region (ortholog) NW_004955440 16977710 17047809 + 102019327 AGCD01036555;AGCD01036556;AGCD01036557;AGCD01036558;GBDF01086865;XM_013517488 XP_013372942 MODEL 8968340 protein-coding Emc10 ER membrane protein complex subunit 10 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN positive regulation of angiogenesis (ortholog); positive regulation of endothelial cell migration (ortholog); positive regulation of endothelial cell proliferation (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Neurodevelopmental Disorder with Dysmorphic Facies and Variable Seizures (ortholog); FOUND IN EMC complex (ortholog); endoplasmic reticulum membrane (ortholog); extracellular region (ortholog) NW_004955559 672055 676569 - 102018659 AGCD01073607;GBBH01088737;GBCQ01033482;XM_005412783 XP_005412840 MODEL 9065083 ncrna LOC102006548 uncharacterized LOC102006548 NW_004955460 7441771 7442931 + 102006548 AGCD01048482;GBDF01093828;XR_263038 MODEL 8879121 pseudo LOC102026205 T-cell surface glycoprotein CD1c3-like NW_004955468 10306664 10310113 - 102026205 AGCD01052075 MODEL 8766255 protein-coding Slc46a3 solute carrier family 46 member 3 ENCODES a protein that exhibits copper ion transmembrane transporter activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN cellular response to 2,3,7,8-tetrachlorodibenzodioxine (ortholog); vacuolar transmembrane transport (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN lysosomal membrane (ortholog) NW_004955497 8015244 8034195 - 102007674 AGCD01062692;GBCE01134273;XM_005406361;XM_005406362;XR_264212 XP_005406418;XP_005406419 MODEL 8779795 protein-coding Smad9 SMAD family member 9 INVOLVED IN BMP signaling pathway (ortholog); bone development (ortholog); cartilage development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH autosomal recessive progressive external ophthalmoplegia 1 (ortholog); Colorectal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955431 9117616 9184920 + 102027327 AGCD01030157;AGCD01030158;GBDF01252867;XM_005387676;XM_013515879 XP_005387733;XP_013371333 MODEL 9027952 protein-coding LOC102025818 uncharacterized LOC102025818 NW_004955505 2242542 2279429 + 102025818 AGCD01064988;AGCD01064989;AGCD01064990;XM_013505920 XP_013361374 MODEL 8955966 protein-coding Pprc1 PPARG related coactivator 1 ASSOCIATED WITH prostate cancer (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955485 8200855 8217373 - 102021669 AGCD01058699;GBDF01223065;XM_005403859;XM_013504112;XM_013504113;XM_013504114;XM_013504115 XP_005403916;XP_013359566;XP_013359567;XP_013359568;XP_013359569 MODEL 9000067 protein-coding LOC102006902 serine protease inhibitor Kazal-type 9 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN negative regulation of proteolysis (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog) NW_004955415 5971642 5977559 + 102006902 AGCD01016005;GBDJ01000916;XM_005380641;XM_013512380 XP_005380698;XP_013367834 MODEL 8705219 pseudo LOC102018738 reactive oxygen species modulator 1 pseudogene NW_004955493 7585489 7586094 - 102018738 AGCD01061202;XM_005405270 MODEL 8915732 protein-coding Pura purine rich element binding protein A ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN dendritic transport of messenger ribonucleoprotein complex (ortholog); epithelial cell proliferation (ortholog); lymphocyte proliferation (ortholog); ASSOCIATED WITH Apnea (ortholog); autosomal dominant intellectual developmental disorder 31 (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955418 538883 548605 - 102023035 AGCD01018679;AGCD01018680;GBDJ01136954;GBDK01130809;XM_013512869 XP_013368323 MODEL 8856090 protein-coding Plat plasminogen activator, tissue type ENCODES a protein that exhibits phosphoprotein binding (ortholog); serine-type endopeptidase activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); cellular response to luteinizing hormone stimulus (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH acute kidney failure (ortholog); acute promyelocytic leukemia (ortholog); Acute Traumatic Coagulopathy (ortholog); FOUND IN apical part of cell (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955536 730962 754333 + 102009758 AGCD01070737;GBCQ01003427;XM_005410511 XP_005410568 MODEL 8992440 protein-coding LOC102010304 protein LEG1 homolog NW_004955436 8564756 8573875 + 102010304 AGCD01033743;GBBH01076388;XM_005389173 XP_005389230 MODEL 8986472 protein-coding Washc2c WASH complex subunit 2C ENCODES a protein that exhibits phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN endocytic recycling (ortholog); negative regulation of barbed-end actin filament capping (ortholog); protein localization to endosome (ortholog); FOUND IN early endosome (ortholog); early endosome membrane (ortholog); endosome (ortholog) NW_004955546 2718758 2764277 - 102018987 AGCD01072099;AGCD01072100;GBDI01070765;XM_013508426;XM_013508427;XM_013508428 XP_013363880;XP_013363881;XP_013363882 MODEL 626189201 snorna SNORA3A small nucleolar RNA, H/ACA box 3A 8904635 protein-coding LOC102012694 solute carrier organic anion transporter family member 5A1 NW_004955444 9855499 9886614 + 102012694 AGCD01038995;GBCQ01074693;XM_013518225 XP_013373679 MODEL 9064416 protein-coding Slc12a1 solute carrier family 12 member 1 ENCODES a protein that exhibits protein serine/threonine kinase binding (ortholog); sodium:potassium:chloride symporter activity (ortholog); INVOLVED IN cell volume homeostasis (ortholog); cellular hyperosmotic salinity response (ortholog); chloride transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH Bartter disease (ortholog); Bartter disease type 1 (ortholog); Bartter disease type 3 (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); extracellular exosome (ortholog) NW_004955409 5597033 5680009 - 102011509 AGCD01009320;AGCD01009321;GBCQ01007582;XM_005376699;XM_005376700;XM_005376701;XM_005376702 XP_005376756;XP_005376757;XP_005376758;XP_005376759 MODEL 8755540 pseudo LOC102011065 60S ribosomal protein L4-like NW_004955447 17826623 17831419 + 102011065 AGCD01041137 MODEL 8916580 ncrna LOC102008434 uncharacterized LOC102008434 NW_004955424 11874487 11899092 + 102008434 AGCD01024575;AGCD01024576;GBDF01252131;XR_001234207;XR_001234208;XR_001234209;XR_001234210;XR_001234211;XR_001234212;XR_001234213;XR_261052 MODEL 8809089 protein-coding LOC102009539 uncharacterized LOC102009539 NW_004955436 8518608 8525672 + 102009539 AGCD01033743;XM_013516636;XM_013516637;XM_013516638 XP_013372090;XP_013372091;XP_013372092 MODEL 8946756 ncrna LOC102028547 uncharacterized LOC102028547 NW_004955422 4534412 4659367 + 102028547 AGCD01022542;AGCD01022543;AGCD01022544;AGCD01022545;AGCD01022546;AGCD01022547;AGCD01022548;GBDF01208829;XR_260853 MODEL 10251319 ncrna LOC106148172 uncharacterized LOC106148172 NW_004955416 7734059 7736819 - 106148172 AGCD01017007;XR_001233380 MODEL 9007798 pseudo LOC102011459 ATP synthase F(0) complex subunit B1, mitochondrial pseudogene NW_004955424 20453388 20454636 + 102011459 AGCD01024856 MODEL 39133349 snrna U4 U4 spliceosomal RNA 8853106 protein-coding LOC102023400 zinc finger protein 45 NW_004955555 1583300 1616003 + 102023400 AGCD01073091;AGCD01073092;GBCE01005260;XM_005412463;XM_005412464;XM_005412465;XM_005412466;XM_005412467;XM_005412470;XM_013508736;XM_013508737;XM_013508738;XM_013508739;XM_013508740;XM_013508741;XM_013508742 XP_005412520;XP_005412521;XP_005412522;XP_005412523;XP_005412524;XP_005412527;XP_013364190;XP_013364191;XP_013364192;XP_013364193;XP_013364194;XP_013364195;XP_013364196 MODEL 8941196 pseudo LOC102026207 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 pseudogene NW_004955469 2149149 2149963 + 102026207 AGCD01052270 MODEL 9028704 protein-coding LOC102005458 zinc finger protein 793 NW_004955468 1948677 2003834 + 102005458 AGCD01051789;AGCD01051790;AGCD01051791;AGCD01051792;AGCD01051793;GBDF01306191;XM_005399907;XM_005399908;XM_005399911;XM_013522326;XM_013522327;XM_013522328 XP_005399964;XP_005399965;XP_005399968;XP_013377780;XP_013377781;XP_013377782 MODEL 8919912 protein-coding Pou5f2 POU domain class 5, transcription factor 2 ENCODES a protein that exhibits sequence-specific DNA binding (ortholog) NW_004955418 18493622 18494871 + 102020667 AGCD01019168;GBDF01005065;XM_005382262 XP_005382319 MODEL 8731622 protein-coding LOC102017582 sulfotransferase 1A1-like NW_004955493 6802353 6802959 - 102017582 AGCD01061141;GBDF01224060;XM_005405345 XP_005405402 MODEL 8808246 protein-coding Snrpb small nuclear ribonucleoprotein polypeptides B and B1 ENCODES a protein that exhibits histone pre-mRNA DCP binding (ortholog); RNA binding (ortholog); telomerase RNA binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); protein methylation (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH cerebrocostomandibular syndrome (ortholog); Disease Progression (ortholog); genetic disease (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955415 13522638 13530725 - 102015006 AGCD01016252;GBDI01021505;XM_005380752;XM_005380753;XM_005380754;XM_005380755 XP_005380809;XP_005380810;XP_005380811;XP_005380812 MODEL 8863532 protein-coding Serpinb13 serpin family B member 13 ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (ortholog); protease binding (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN negative regulation of endopeptidase activity (ortholog); negative regulation of keratinocyte apoptotic process (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955402 47376973 47395267 + 102024407 AGCD01001180;AGCD01001181;XM_005373031 XP_005373088 MODEL 10367736 pseudo LOC106147079 high mobility group protein B1-like NW_004955516 4767150 4767759 + 106147079 AGCD01067536 MODEL 8850440 pseudo LOC102027883 eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like NW_004955507 655410 657384 - 102027883 AGCD01065479 MODEL 8796399 protein-coding Top3a DNA topoisomerase III alpha ENCODES a protein that exhibits DNA topoisomerase type I (single strand cut, ATP-independent) activity (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN chromosome separation (ortholog); DNA topological change (ortholog); double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 5 (ortholog); genetic disease (ortholog); Microcephaly, Growth Restriction, and Increased Sister Chromatid Exchange 2 (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); PML body (ortholog) NW_004955478 11015378 11045717 + 102020114 AGCD01056157;GBDF01128087;XM_005402278;XM_005402279 XP_005402335;XP_005402336 MODEL 8733870 pseudo LOC102019148 60S ribosomal protein L26 pseudogene NW_004955409 36742477 36744893 + 102019148 AGCD01010480 MODEL 8888144 protein-coding LOC102012695 olfactory receptor 2Z1 ASSOCIATED WITH prostate cancer (ortholog) NW_004955563 779884 780825 - 102012695 AGCD01074088;XM_005413204 XP_005413261 MODEL 8909584 pseudo LOC102011069 multifunctional protein ADE2 pseudogene NW_004955402 52895248 52897277 + 102011069 AGCD01001350 MODEL 9029381 protein-coding Rtn4ip1 reticulon 4 interacting protein 1 ENCODES a protein that exhibits NADH dehydrogenase (quinone) (non-electrogenic) activity (ortholog); NADPH dehydrogenase (quinone) activity (ortholog); INVOLVED IN regulation of dendrite development (ortholog); ubiquinone biosynthetic process (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955411 31902848 31950645 - 102007315 AGCD01012289;GBCQ01127142;XM_005377832 XP_005377889 MODEL 8968557 protein-coding Rem2 RRAD and GEM like GTPase 2 ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); FOUND IN plasma membrane (ortholog) NW_004955409 37403758 37408312 - 102030048 AGCD01010511;GBDI01226110;XM_005377113 XP_005377170 MODEL 8703224 pseudo LOC102018739 non-histone chromosomal protein HMG-14 pseudogene NW_004955422 17353812 17357226 + 102018739 AGCD01022920;AGCD01022921 MODEL 8709853 protein-coding LOC102009550 olfactory receptor 5AU1 NW_004955550 1921231 1923589 - 102009550 AGCD01072598;XM_013508583 XP_013364037 MODEL 8760598 pseudo LOC102015672 zinc transporter 9 pseudogene NW_004955446 17828072 17829356 + 102015672 AGCD01040386 MODEL 8820384 protein-coding LOC102011465 olfactory receptor 4D9-like NW_004955511 4030217 4031152 + 102011465 AGCD01066488;XM_005408064 XP_005408121 MODEL 8950745 pseudo LOC102010305 protein archease pseudogene NW_004955532 1134983 1135508 + 102010305 AGCD01070166 MODEL 8762381 ncrna LOC102021673 uncharacterized LOC102021673 NW_004955488 1906171 1944728 - 102021673 AGCD01059513;AGCD01059514;GBDF01253331;XR_263996 MODEL 616940628 snorna SNORA4 small nucleolar RNA, H/ACA box 4 8795534 pseudo LOC102010711 probable ATP-dependent RNA helicase DDX41 pseudogene NW_004955502 1434 3248 + 102010711 AGCD01064229 MODEL 9015181 protein-coding Lhfpl5 LHFPL tetraspan subfamily member 5 INVOLVED IN auditory receptor cell stereocilium organization (ortholog); detection of mechanical stimulus involved in sensory perception of sound (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 67 (ortholog); Deafness (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog); stereocilium bundle (ortholog) NW_004955437 3644448 3650688 + 102013214 AGCD01034330;XM_013516732 XP_013372186 MODEL 10135424 ncrna LOC106149918 uncharacterized LOC106149918 NW_004955457 611440 618723 - 106149918 AGCD01046712;XR_001236383 MODEL 8770101 ncrna LOC102028897 uncharacterized LOC102028897 NW_004955438 15069554 15071930 + 102028897 AGCD01035359;GBDF01020711;XR_261936 MODEL 9046024 protein-coding Trim21 tripartite motif containing 21 ENCODES a protein that exhibits identical protein binding (ortholog); transcription coactivator activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); negative regulation of innate immune response (ortholog); negative regulation of protein deubiquitination (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); nucleus (ortholog) NW_004955414 20066109 20077331 - 102014130 AGCD01015355;GBCQ01032815;XM_005380044;XM_005380045;XR_001233160 XP_005380101;XP_005380102 MODEL 8801405 protein-coding Prpf38b pre-mRNA processing factor 38B ASSOCIATED WITH High Myopia (ortholog) NW_004955435 12162730 12172136 + 102019729 AGCD01033135;GBDJ01081283;XM_005388832 XP_005388889 MODEL 8735400 protein-coding Pasd1 PAS domain containing repressor 1 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); transcription regulator inhibitor activity (ortholog); INVOLVED IN negative regulation of circadian rhythm (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN Cry-Per complex (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955498 7127978 7194359 + 102028104 AGCD01063145;GBDF01196021;XM_013505536 XP_013360990 MODEL 8749689 protein-coding Rassf3 Ras association domain family member 3 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Familial Prostate Cancer (ortholog); FOUND IN cytosol (ortholog) NW_004955458 11400655 11451796 + 102008825 AGCD01047749;AGCD01047750;GBBH01209336;GBDI01147576;XM_005397534 XP_005397591 MODEL 9049014 protein-coding Emc2 ER membrane protein complex subunit 2 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); FOUND IN cytoplasm (ortholog); EMC complex (ortholog); endoplasmic reticulum (ortholog) NW_004955417 31019389 31048143 + 102003445 AGCD01018638;GBDJ01140382;XM_005381969;XM_005381970;XM_005381971 XP_005382026;XP_005382027;XP_005382028 MODEL 8741975 ncrna LOC102030347 uncharacterized LOC102030347 NW_004955542 2579063 2591549 + 102030347 AGCD01071526;GBDF01193963;XR_001232160 MODEL 8900591 protein-coding Pou6f1 POU class 6 homeobox 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH lung adenocarcinoma (ortholog); FOUND IN nuclear body (ortholog); nucleus (ortholog) NW_004955547 1685365 1712028 - 102023958 AGCD01072241;AGCD01072242;GBBH01155724;XM_013508496 XP_013363950 MODEL 8913281 pseudo LOC102006549 E3 ISG15--protein ligase HERC5-like NW_004955409 19021413 19028218 + 102006549 AGCD01009854 MODEL 8806078 protein-coding Slc12a2 solute carrier family 12 member 2 ENCODES a protein that exhibits ammonium channel activity (ortholog); chloride:monoatomic cation symporter activity (ortholog); Hsp90 protein binding (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); branching involved in mammary gland duct morphogenesis (ortholog); cell volume homeostasis (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); autism spectrum disorder (ortholog); autosomal dominant nonsyndromic deafness 78 (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955415 1138297 1219241 + 102023689 AGCD01015863;GBCE01002817;GBCE01002818;XM_005381114 XP_005381171 MODEL 8850626 ncrna LOC102006910 uncharacterized LOC102006910 NW_004955417 25248421 25254129 - 102006910 AGCD01018475;XR_260493 MODEL 8721223 protein-coding Smagp small cell adhesion glycoprotein FOUND IN cell junction (ortholog); cytoplasmic vesicle membrane (ortholog); plasma membrane (ortholog) NW_004955547 1742597 1766460 - 102016202 AGCD01072245;GBBH01031858;GBDF01305508;XM_005411960 XP_005412017 MODEL 8836794 protein-coding Purb purine rich element binding protein B ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955456 7322973 7323529 + 102008380 AGCD01046407;GBDJ01139895;XM_013520514 XP_013375968 MODEL 39133350 snrna U4 U4 spliceosomal RNA 8971807 protein-coding Pde4dip phosphodiesterase 4D interacting protein ENCODES a protein that exhibits enzyme binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN astral microtubule organization (ortholog); positive regulation of microtubule nucleation (ortholog); protein-containing complex assembly (ortholog); FOUND IN centrosome (ortholog); cortical microtubule plus-end (ortholog); cytoplasm (ortholog) NW_004955568 1321053 1546351 - 102017074 AGCD01074545;AGCD01074546;AGCD01074547;GBDI01077273;XM_005413474;XM_005413475;XM_013509336;XM_013509337;XM_013509339;XM_013509340;XM_013509341;XM_013509342;XM_013509343;XM_013509344;XM_013509345;XM_013509346;XM_013509347;XM_013509348;XR_265041 XP_005413531;XP_005413532;XP_013364790;XP_013364791;XP_013364793;XP_013364794;XP_013364795;XP_013364796;XP_013364797;XP_013364798;XP_013364799;XP_013364800;XP_013364801;XP_013364802 MODEL 8727246 protein-coding Thbs3 thrombospondin 3 ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN bone trabecula formation (ortholog); growth plate cartilage development (ortholog); ossification involved in bone maturation (ortholog); ASSOCIATED WITH genetic disease (ortholog); prostate cancer (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog) NW_004955545 1664372 1675810 - 102003381 AGCD01071865;AGCD01071866;GBDK01058843;XM_005411591;XM_005411593;XM_005411594;XM_013508309;XM_013508310 XP_005411648;XP_005411650;XP_005411651;XP_013363763;XP_013363764 MODEL 8729065 protein-coding Sdha succinate dehydrogenase complex flavoprotein subunit A ENCODES a protein that exhibits succinate dehydrogenase (quinone) activity (ortholog); INVOLVED IN nervous system development (ortholog); respiratory electron transport chain (ortholog); succinate metabolic process (ortholog); PARTICIPATES IN citric acid cycle pathway; electron transport chain pathway; fumaric aciduria pathway; ASSOCIATED WITH B-lymphoblastic leukemia/lymphoma with hypodiploidy (ortholog); Brain Neoplasms (ortholog); Breast Cancer, Familial (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955504 36939 66507 + 102017478 AGCD01064814;GBDJ01073185;XM_005406984;XM_005406985;XM_005406986 XP_005407041;XP_005407042;XP_005407043 MODEL 9041242 pseudo LOC102015673 actin-related protein 2/3 complex subunit 1A pseudogene NW_004955574 43213 44487 + 102015673 AGCD01075080 MODEL 8701905 ncrna LOC102024423 uncharacterized LOC102024423 NW_004955453 14383498 14394719 - 102024423 AGCD01044864;GBDF01252476;XR_001236145;XR_001236146;XR_262734;XR_262735 MODEL 8832712 pseudo LOC102027204 tubulin polyglutamylase complex subunit 2 pseudogene NW_004955501 4803413 4805642 - 102027204 AGCD01064145 MODEL 8718403 ncrna LOC102008436 uncharacterized LOC102008436 NW_004955501 720309 731808 + 102008436 AGCD01064038;GBDF01158739;XR_001231521 MODEL 8882122 protein-coding Rabepk Rab9 effector protein with kelch motifs ASSOCIATED WITH High Myopia (ortholog); FOUND IN endosome membrane (ortholog) NW_004955419 3061838 3096693 - 102017020 AGCD01019701;AGCD01019702;AGCD01019703;AGCD01019704;AGCD01019705;GBDJ01282527;XM_005382469;XM_005382470;XM_005382473;XM_013513179 XP_005382526;XP_005382527;XP_005382530;XP_013368633 MODEL 10252140 pseudo LOC106148173 RNA-binding protein 45 pseudogene NW_004955403 18681487 18756679 - 106148173 AGCD01002105;AGCD01002106;AGCD01002107;AGCD01002108;AGCD01002109;AGCD01002110 MODEL 8891102 pseudo LOC102028548 COMM domain-containing protein 2 pseudogene NW_004955491 4499355 4501057 - 102028548 AGCD01060439 MODEL 8813192 ncrna LOC102025820 uncharacterized LOC102025820 NW_004955427 24791667 24794509 - 102025820 AGCD01027521;AGCD01027522;GBDK01316391;XR_261288 MODEL 9055830 pseudo LOC102019150 ribosome biogenesis protein BRX1 homolog pseudogene NW_004955411 12654807 12655867 + 102019150 AGCD01011851 MODEL 8761737 protein-coding Slc48a1 solute carrier family 48 member 1 ENCODES a protein that exhibits heme binding (ortholog); heme transmembrane transporter activity (ortholog); INVOLVED IN heme export (ortholog); heme export from vacuole to cytoplasm (ortholog); heme metabolic process (ortholog); FOUND IN cytoplasm (ortholog); endolysosome (ortholog); endosome membrane (ortholog) NW_004955500 6675631 6691942 + 102020028 AGCD01063890;AGCD01063891;GBBH01089082;XM_005406620;XM_005406621;XM_005406622 XP_005406677;XP_005406678;XP_005406679 MODEL 8981513 protein-coding LOC102003707 vomeronasal type-1 receptor 2-like NW_004955569 1079109 1080002 - 102003707 AGCD01074636;XM_013509364 XP_013364818 MODEL 39131418 protein-coding WASHC3 WASH complex subunit 3 8764564 protein-coding Rtn4r reticulon 4 receptor ENCODES a protein that exhibits chondroitin sulfate binding (ortholog); ganglioside GM1 binding (ortholog); ganglioside GT1b binding (ortholog); INVOLVED IN axonogenesis (ortholog); cell surface receptor signaling pathway (ortholog); corpus callosum development (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN axonal growth cone (ortholog); cell surface (ortholog); dendritic shaft (ortholog) NW_004955442 17866508 17891803 + 102021054 AGCD01037988;GBCE01016565;XM_005391722 XP_005391779 MODEL 8770727 pseudo LOC102025822 translationally-controlled tumor protein-like NW_004955506 4281834 4288280 - 102025822 AGCD01065332 MODEL 8963331 protein-coding LOC102011070 vomeronasal type-1 receptor 4-like NW_004955603 546797 561763 + 102011070 AGCD01076853;AGCD01076854;AGCD01076855;XM_005414848 XP_005414905 MODEL 9066599 protein-coding Ren renin ENCODES a protein that exhibits aspartic-type endopeptidase activity (ortholog); endopeptidase activity (ortholog); insulin-like growth factor receptor binding (ortholog); INVOLVED IN angiotensin maturation (ortholog); cell maturation (ortholog); cellular response to xenobiotic stimulus (ortholog); PARTICIPATES IN benazepril pharmacodynamics pathway; candesartan pharmacodynamics pathway; captopril pharmacodynamics pathway; ASSOCIATED WITH acute kidney failure (ortholog); Albuminuria (ortholog); anemia (ortholog); FOUND IN apical part of cell (ortholog); extracellular region (ortholog); membrane (ortholog) NW_004955406 40016624 40026286 - 102018155 AGCD01006651;XM_005375286 XP_005375343 MODEL 8716906 ncrna LOC102018740 uncharacterized LOC102018740 NW_004955423 15350156 15352340 + 102018740 AGCD01023805;GBCB01061780;XR_260970 MODEL 626189163 snorna SNORA41 small nucleolar RNA, H/ACA box 41 9017176 protein-coding LOC102011468 carnosine N-methyltransferase NW_004955512 4044108 4112888 + 102011468 AGCD01066722;AGCD01066723;AGCD01066724;AGCD01066725;AGCD01066726;AGCD01066727;AGCD01066728;AGCD01066729;GBCE01103835;GBDF01121011;XM_013506528 XP_013361982 MODEL 8955044 protein-coding Bricd5 BRICHOS domain containing 5 NW_004955442 15054116 15056506 + 102028586 AGCD01037856;GBDF01024331;XM_005391445;XM_005391446;XM_013517734;XM_013517735 XP_005391502;XP_005391503;XP_013373188;XP_013373189 MODEL 8958249 pseudo LOC102021677 40S ribosomal protein S6 pseudogene NW_004955422 2919897 2921786 - 102021677 AGCD01022495 MODEL 9028304 protein-coding Psmd8 proteasome 26S subunit, non-ATPase 8 INVOLVED IN regulation of AMPA receptor activity (ortholog); ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); FOUND IN proteasome accessory complex (ortholog); proteasome complex (ortholog); synaptic vesicle (ortholog) NW_004955468 1044940 1052130 - 102016041 AGCD01051749;GBBH01033976;XM_013522469 XP_013377923 MODEL 10368629 ncrna LOC106147080 uncharacterized LOC106147080 NW_004955408 35085904 35095761 + 106147080 AGCD01008930;GBDF01166002;XR_001231809 MODEL 10294489 ncrna LOC106149919 uncharacterized LOC106149919 NW_004955457 8893976 8911353 - 106149919 AGCD01046920;AGCD01046921;GBDJ01352635;XR_001236394;XR_001236395;XR_001236396;XR_001236397 MODEL 8731899 pseudo LOC102025825 olfactory receptor 1013-like NW_004955511 1840614 1841529 + 102025825 AGCD01066381 MODEL 9003008 protein-coding LOC102010712 huntingtin-interacting protein M-like NW_004955503 3419013 3419370 - 102010712 AGCD01064627;GBDF01001006;GBDK01096844;XM_013505852 XP_013361306 MODEL 8768708 pseudo LOC102023402 60 kDa heat shock protein, mitochondrial pseudogene NW_004955561 2077130 2078369 - 102023402 AGCD01073870;XR_265012 MODEL 8787801 protein-coding Top3b DNA topoisomerase III beta ENCODES a protein that exhibits RNA topoisomerase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); FOUND IN condensed chromosome (ortholog); DNA topoisomerase III-beta-TDRD3 complex (ortholog); nucleus (ortholog) NW_004955442 17201079 17223824 + 102011701 AGCD01037946;GBBH01143487;XM_005391689;XM_005391690;XM_005391691;XM_005391692;XM_005391693;XM_013517987 XP_005391746;XP_005391747;XP_005391748;XP_005391749;XP_005391750;XP_013373441 MODEL 8954233 protein-coding Ppt1 palmitoyl-protein thioesterase 1 ENCODES a protein that exhibits lysophosphatidic acid binding (ortholog); palmitoyl-(protein) hydrolase activity (ortholog); phospholipase A2 inhibitor activity (ortholog); INVOLVED IN adult locomotory behavior (ortholog); associative learning (ortholog); brain development (ortholog); PARTICIPATES IN fatty acid elongation pathway; ASSOCIATED WITH congenital myopathy 1A (ortholog); COVID-19 (ortholog); disease of cellular proliferation (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); endoplasmic reticulum (ortholog) NW_004955452 17518345 17549112 - 102003937 AGCD01044558;AGCD01044559;GBDF01128197;XM_005395273;XM_013519551 XP_005395330;XP_013375005 MODEL 8776154 protein-coding Plau plasminogen activator, urokinase ENCODES a protein that exhibits peptidase activity (ortholog); receptor ligand activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to fluid shear stress (ortholog); cellular response to glucose stimulus (ortholog); PARTICIPATES IN fibrinolysis pathway; fibroblast growth factor signaling pathway; ASSOCIATED WITH otitis media; Acute Lung Injury (ortholog); adenocarcinoma (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog); protein complex involved in cell-matrix adhesion (ortholog) NW_004955437 17995726 18000542 - 102006955 AGCD01034771;GBBH01166562;XM_005389937 XP_005389994 MODEL 8971563 ncrna LOC102006552 uncharacterized LOC102006552 NW_004955463 9133087 9192984 - 102006552 AGCD01049772;AGCD01049773;AGCD01049774;GBDF01280994;XR_263162 MODEL 8933570 pseudo LOC102010306 L-lactate dehydrogenase A chain pseudogene NW_004955437 1653118 1654576 - 102010306 AGCD01034224 MODEL 8817975 pseudo LOC102009551 ATP synthase F(0) complex subunit C1, mitochondrial pseudogene NW_004955442 7881091 7881501 + 102009551 AGCD01037628 MODEL 8801680 protein-coding LOC102026209 olfactory receptor 51A4-like NW_004955414 21018291 21019244 - 102026209 AGCD01015402;XM_005380071 XP_005380128 MODEL 9040895 protein-coding LOC102005462 chromosome unknown open reading frame, human C19orf53 NW_004955415 32590287 32592465 + 102005462 AGCD01016726;GBDI01013906;XM_005381066 XP_005381123 MODEL 8702509 protein-coding Rigi RNA sensor RIG-I ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); double-stranded DNA binding (ortholog); double-stranded RNA binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to exogenous dsRNA (ortholog); cytoplasmic pattern recognition receptor signaling pathway (ortholog); ASSOCIATED WITH Disease Progression (ortholog); genetic disease (ortholog); hepatitis C (ortholog); FOUND IN actin cytoskeleton (ortholog); bicellular tight junction (ortholog); cytoplasm (ortholog) NW_004955472 3093895 3135524 + 102017119 AGCD01053503;AGCD01053504;GBBH01063676;XM_013522945 XP_013378399 MODEL 8796326 protein-coding LOC102017584 interferon-induced protein with tetratricopeptide repeats 1B NW_004955425 3606058 3611013 - 102017584 AGCD01025294;GBBH01026311;XM_005385853 XP_005385910 MODEL 8894270 protein-coding LOC102028899 zinc finger protein 136-like NW_004955546 756613 783636 - 102028899 AGCD01072021;AGCD01072022;AGCD01072023;AGCD01072024;GBCB01041265;XM_013508413 XP_013363867 MODEL 8888737 protein-coding Snrpb2 small nuclear ribonucleoprotein polypeptide B2 ENCODES a protein that exhibits snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH connective tissue disease (ortholog); disease of cellular proliferation (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955415 25880013 25889295 + 102007758 AGCD01016587;GBDF01052661;XM_005380902 XP_005380959 MODEL 8924789 protein-coding LOC102027884 uncharacterized LOC102027884 NW_004955429 18787884 18800538 + 102027884 AGCD01028921;GBDI01143543;XM_013515459;XM_013515460;XM_013515462;XM_013515463;XR_001234512;XR_001234513;XR_001234514;XR_001234515;XR_001234516 XP_013370913;XP_013370914;XP_013370916;XP_013370917 MODEL 8820474 protein-coding Sdhaf1 succinate dehydrogenase complex assembly factor 1 INVOLVED IN mitochondrial respiratory chain complex II assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); mitochondrial complex II deficiency (ortholog); Mitochondrial Complex II Deficiency Nuclear Type 1 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955468 2590592 2591669 - 102014656 AGCD01051827;GBDI01353347;XM_005399939 XP_005399996 MODEL 626189210 snorna SNORA44 small nucleolar RNA, H/ACA box 44 10205720 ncrna LOC106148174 uncharacterized LOC106148174 NW_004955417 9799575 9804494 - 106148174 AGCD01018056;XR_001233386 MODEL 8729356 pseudo LOC102030353 40S ribosomal protein S2 pseudogene NW_004955442 2687571 2688398 - 102030353 AGCD01037473 MODEL 9001833 protein-coding Pou6f2 POU class 6 homeobox 2 ASSOCIATED WITH autistic disorder (ortholog); hypogonadotropic hypogonadism (ortholog); hypogonadotropic hypogonadism 7 with or without anosmia (ortholog) NW_004955460 4021679 4497538 - 102019574 AGCD01048427;AGCD01048428;AGCD01048429;AGCD01048430;AGCD01048431;AGCD01048432;AGCD01048433;AGCD01048434;AGCD01048435;AGCD01048436;GBDK01408737;XM_005397733 XP_005397790 MODEL 9044467 protein-coding Rassf4 Ras association domain family member 4 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955546 2277679 2307877 + 102013876 AGCD01072084;GBDF01073498;XM_005411784;XM_005411785 XP_005411841;XP_005411842 MODEL 39133351 snrna U4 U4 spliceosomal RNA 8739661 protein-coding Slc12a3 solute carrier family 12 member 3 ENCODES a protein that exhibits enzyme binding (ortholog); protein serine/threonine kinase binding (ortholog); sodium ion transmembrane transporter activity (ortholog); INVOLVED IN chloride transport (ortholog); renal sodium ion absorption (ortholog); response to aldosterone (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH aortic disease (ortholog); Bartter disease (ortholog); essential hypertension (ortholog); FOUND IN apical plasma membrane (ortholog); cytosol (ortholog); extracellular exosome (ortholog) NW_004955433 14553752 14588317 + 102019523 AGCD01031722;GBCQ01012135;XM_005388362;XM_005388363 XP_005388419;XP_005388420 MODEL 9025547 protein-coding Purg purine rich element binding protein G FOUND IN synapse (ortholog) NW_004955463 7460533 7495106 - 102028169 AGCD01049732;AGCD01049733;AGCD01049734;GBDF01087359;GBDF01304571;XM_005398386 XP_005398443 MODEL 8768107 protein-coding Rabgap1 RAB GTPase activating protein 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN regulation of cilium assembly (ortholog); FOUND IN cytosol (ortholog) NW_004955419 4869799 5031430 - 102028752 AGCD01019777;AGCD01019778;AGCD01019779;AGCD01019780;GBDF01126192;XM_005382507;XM_005382508;XM_005382509;XM_005382510;XM_013513144;XM_013513145;XM_013513146 XP_005382564;XP_005382565;XP_005382566;XP_005382567;XP_013368598;XP_013368599;XP_013368600 MODEL 9040127 protein-coding Smap1 small ArfGAP 1 ENCODES a protein that exhibits clathrin binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN positive regulation of erythrocyte differentiation (ortholog); regulation of clathrin-dependent endocytosis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955488 5758682 5866883 + 102028976 AGCD01059634;AGCD01059635;AGCD01059636;AGCD01059637;GBDJ01179960;XM_005404477;XM_013504418;XM_013504419;XM_013504420;XM_013504421;XM_013504422;XM_013504423;XM_013504424;XM_013504425 XP_005404534;XP_013359872;XP_013359873;XP_013359874;XP_013359875;XP_013359876;XP_013359877;XP_013359878;XP_013359879 MODEL 9016314 protein-coding Pde5a phosphodiesterase 5A ENCODES a protein that exhibits 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); 3',5'-cyclic-nucleotide phosphodiesterase activity (ortholog); cGMP binding (ortholog); INVOLVED IN cGMP catabolic process (ortholog); cGMP metabolic process (ortholog); negative regulation of cardiac muscle contraction (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); Experimental Diabetes Mellitus (ortholog); Hearing Loss (ortholog) NW_004955428 20785497 20904717 + 102022312 AGCD01028127;AGCD01028128;GBCQ01048848;XM_005386794;XM_005386796 XP_005386851;XP_005386853 MODEL 8828936 protein-coding Washc4 WASH complex subunit 4 INVOLVED IN cognition (ortholog); endolysosomal toll-like receptor signaling pathway (ortholog); endosomal transport (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH autosomal recessive intellectual developmental disorder 43 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN BLOC-1 complex (ortholog); early endosome (ortholog); endosome (ortholog) NW_004955405 39451423 39499295 + 102016230 AGCD01005500;AGCD01005501;GBDF01188550;XM_005374605 XP_005374662 MODEL 8943463 protein-coding Renbp renin binding protein ENCODES a protein that exhibits ATP binding (ortholog); enzyme inhibitor activity (ortholog); identical protein binding (ortholog); INVOLVED IN N-acetylglucosamine metabolic process (ortholog); N-acetylmannosamine metabolic process (ortholog); negative regulation of catalytic activity (ortholog); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; renin-angiotensin cascade pathway; ASSOCIATED WITH COVID-19 (ortholog); dilated cardiomyopathy (ortholog) NW_004955580 610112 615019 - 102024067 AGCD01075615;GBCE01052970;GBCQ01072116;XM_013509702 XP_013365156 MODEL 9056648 protein-coding Lhfpl6 LHFPL tetraspan subfamily member 6 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955431 6745745 6977662 + 102017595 AGCD01030065;AGCD01030066;AGCD01030067;XM_013515896 XP_013371350 MODEL 9011408 protein-coding Thbs4 thrombospondin 4 ENCODES a protein that exhibits calcium ion binding (ortholog); collagen binding (ortholog); fibronectin binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); endothelial cell-cell adhesion (ortholog); myoblast migration (ortholog); FOUND IN basement membrane (ortholog); endoplasmic reticulum (ortholog); extracellular matrix (ortholog) NW_004955425 21072873 21117061 - 102024029 AGCD01025781;GBBH01063682;XM_005386101 XP_005386158 MODEL 8737717 protein-coding Trim23 tripartite motif containing 23 ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN positive regulation of autophagy (ortholog); positive regulation of protein modification process (ortholog); protein ubiquitination (ortholog); FOUND IN cytoplasm (ortholog); Golgi membrane (ortholog); lysosomal membrane (ortholog) NW_004955446 3480177 3509050 + 102019968 AGCD01040020;AGCD01040021;AGCD01040022;GBDJ01063114;XM_005392627 XP_005392684 MODEL 8792392 ncrna LOC102008437 uncharacterized LOC102008437 NW_004955501 6949506 6954792 - 102008437 AGCD01064202;GBDF01210166;XR_264256 MODEL 9025072 pseudo LOC102026210 glutathione peroxidase 1-like NW_004955470 3805877 3806570 + 102026210 AGCD01052712 MODEL 8882824 protein-coding Prpf39 pre-mRNA processing factor 39 NW_004955409 16824638 16845778 - 102008194 AGCD01009744;GBDF01060020;XM_005376861;XM_005376863;XM_005376864;XM_005376865;XM_005376866;XM_013510344 XP_005376918;XP_005376920;XP_005376921;XP_005376922;XP_005376923;XP_013365798 MODEL 8794498 protein-coding Brinp1 BMP/retinoic acid inducible neural specific 1 INVOLVED IN behavioral fear response (ortholog); brain development (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); autism spectrum disorder (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); synapse (ortholog) NW_004955419 8529213 8704113 + 102029398 AGCD01019899;AGCD01019900;GBBH01200609;XM_005382605 XP_005382662 MODEL 10157374 ncrna LOC106147081 uncharacterized LOC106147081 NW_004955517 995794 1004546 + 106147081 AGCD01067588;GBCE01159944;XR_001231810;XR_001231811 MODEL 8972184 protein-coding LOC102006911 zinc finger protein 14-like NW_004955417 31668874 31705932 - 102006911 AGCD01018660;AGCD01018661;AGCD01018662;GBCE01006196;XM_005381977;XM_013512776 XP_005382034;XP_013368230 MODEL 8769647 protein-coding Pask PAS domain containing serine/threonine kinase ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN energy homeostasis (ortholog); negative regulation of glycogen biosynthetic process (ortholog); protein autophosphorylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); chromosome 2q37 deletion syndrome (ortholog); chronic kidney disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955542 539806 578496 + 102011361 AGCD01071474;GBDF01084415;XM_013508060;XM_013508061 XP_013363514;XP_013363515 MODEL 8858834 protein-coding LOC102019158 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955413 9642246 9643405 - 102019158 AGCD01013908;XM_013511580 XP_013367034 MODEL 8859708 ncrna LOC102023403 uncharacterized LOC102023403 NW_004955444 15501192 15502267 - 102023403 AGCD01039136;GBDF01064198;XR_262274 MODEL 8711879 protein-coding Slc49a3 solute carrier family 49 member 3 NW_004955514 289301 295443 - 102007146 AGCD01067006;GBDJ01187158;XM_005408673;XM_013506845;XM_013506846;XR_001231781 XP_005408730;XP_013362299;XP_013362300 MODEL 9041505 protein-coding LOC102028552 zinc finger protein 709 NW_004955495 2467631 2480908 + 102028552 AGCD01061777;AGCD01061778;GBDK01415243;XM_013505119 XP_013360573 MODEL 9059877 protein-coding LOC102003708 UDP-glucuronosyltransferase 2B20-like NW_004955447 4180631 4374845 - 102003708 AGCD01040708;AGCD01040709;AGCD01040710;AGCD01040711;AGCD01040712;AGCD01040713;AGCD01040714;AGCD01040715;GBDF01017425;XM_005392805;XM_005392807;XM_005392808 XP_005392862;XP_005392864;XP_005392865 MODEL 8850855 ncrna LOC102015674 uncharacterized LOC102015674 NW_004955447 17861375 17867429 + 102015674 AGCD01041142;GBBH01047912;XR_001235743;XR_262442 MODEL 8781748 protein-coding Serpinb2 serpin family B member 2 PARTICIPATES IN fibrinolysis pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); metabolic dysfunction-associated steatotic liver disease (ortholog); FOUND IN cornified envelope (ortholog) NW_004955402 47707182 47720688 + 102026493 AGCD01001192;GBBH01024006;XM_005373036 XP_005373093 MODEL 8747724 protein-coding Plaur plasminogen activator, urokinase receptor ENCODES a protein that exhibits cell-matrix adhesion mediator activity (ortholog); enzyme activator activity (ortholog); enzyme binding (ortholog); INVOLVED IN cell-matrix adhesion (ortholog); epithelial cell differentiation involved in prostate gland development (ortholog); mesenchymal cell differentiation (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH alcohol-associated liver disease (ortholog); autistic disorder (ortholog); Bacteremia (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog); protein complex involved in cell-matrix adhesion (ortholog) NW_004955555 1378505 1393395 - 102017395 AGCD01073075;AGCD01073076;AGCD01073077;GBCE01155133;GBCQ01139720;XM_013508758 XP_013364212 MODEL 8728342 ncrna LOC102012697 uncharacterized LOC102012697 NW_004955445 18404493 18440417 + 102012697 AGCD01039904;GBDF01229799;XR_262357 MODEL 8723744 pseudo LOC102027206 splicing factor 45 pseudogene NW_004955427 2663864 2665065 + 102027206 AGCD01026900 MODEL 8817344 protein-coding Rtn4rl1 reticulon 4 receptor like 1 ENCODES a protein that exhibits chondroitin sulfate binding (ortholog); heparin binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN corpus callosum development (ortholog); negative regulation of axon regeneration (ortholog); negative regulation of neuron projection development (ortholog); FOUND IN cell surface (ortholog); membrane raft (ortholog); perikaryon (ortholog) NW_004955481 1209429 1277309 + 102013083 AGCD01056828;AGCD01056829;AGCD01056830;GBCE01021884;XM_005402600;XM_005402601;XM_013503376;XM_013503377;XR_263758;XR_263759;XR_263760;XR_263761;XR_263762 XP_005402657;XP_005402658;XP_013358830;XP_013358831 MODEL 8753712 protein-coding LOC102024431 olfactory receptor 9-like NW_004955458 3112558 3113496 - 102024431 AGCD01047271;XM_013520801 XP_013376255 MODEL 8707218 pseudo LOC102011469 60S ribosomal protein L36a-like NW_004955431 5509247 5509567 - 102011469 AGCD01030034 MODEL 8751626 pseudo LOC102005464 KATNB1-like protein 1 NW_004955415 14290724 14297874 + 102005464 AGCD01016295 MODEL 9015771 protein-coding Emc3 ER membrane protein complex subunit 3 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); FOUND IN EMC complex (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955561 1442953 1459988 - 102016760 AGCD01073855;GBDF01004644;XM_005413063 XP_005413120 MODEL 8762499 pseudo LOC102025826 GTP-binding protein SAR1b pseudogene NW_004955512 1337153 1337741 - 102025826 AGCD01066638 MODEL 8916024 protein-coding Psmd9 proteasome 26S subunit, non-ATPase 9 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN negative regulation of insulin secretion (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of insulin secretion (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog); proteasome regulatory particle, base subcomplex (ortholog) NW_004955482 6555902 6567481 - 102009946 AGCD01057403;GBCB01039020;XM_005403105 XP_005403162 MODEL 8801797 ncrna LOC102028902 uncharacterized LOC102028902 NW_004955550 1667159 1671779 - 102028902 AGCD01072583;GBDF01011110;XR_264918 MODEL 8834059 protein-coding Rep15 RAB15 effector protein INVOLVED IN receptor recycling (ortholog); transferrin transport (ortholog); FOUND IN early endosome membrane (ortholog); endosome membrane (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955505 7189592 7190928 - 102021262 AGCD01065201;GBDJ01171786;XM_005407162 XP_005407219 MODEL 9058602 protein-coding Lhfpl7 LHFPL tetraspan subfamily member 7 NW_004955455 237462 251622 + 102010867 AGCD01045555;GBCQ01058010;XM_005396133;XM_013520489;XM_013520490;XM_013520491 XP_005396190;XP_013375943;XP_013375944;XP_013375945 MODEL 8780782 pseudo LOC102010717 probable ATP-dependent RNA helicase DDX41 NW_004955428 2954658 3061479 + 102010717 AGCD01027644;AGCD01027645;AGCD01027646;AGCD01027647;AGCD01027648 MODEL 9016046 pseudo LOC102008438 CDC42 small effector protein 1 pseudogene NW_004955503 2028864 2063030 - 102008438 AGCD01064593;AGCD01064594 MODEL 8861261 pseudo LOC102030355 chromobox protein homolog 3-like NW_004955443 8385120 8385939 + 102030355 AGCD01038323 MODEL 8720377 pseudo LOC102006553 CAP-Gly domain-containing linker protein 1 pseudogene NW_004955463 5125915 5126991 - 102006553 AGCD01049632 MODEL 9043286 ncrna LOC102018745 uncharacterized LOC102018745 NW_004955425 3755805 3770222 - 102018745 AGCD01025296;AGCD01025297;GBDF01112248;XR_261124 MODEL 8812703 protein-coding LOC102011071 PRAME family member 8-like NW_004955618 112533 125114 - 102011071 AGCD01077296;AGCD01077297;GBDF01153091;XM_005415002 XP_005415059 MODEL 8882910 protein-coding LOC102009553 chromosome unknown open reading frame, human C16orf91 ENCODES a protein that exhibits protein-membrane adaptor activity (ortholog); INVOLVED IN mitochondrial respiratory chain complex III assembly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955442 15820684 15821784 + 102009553 AGCD01037879;GBDF01189237;XM_005391583 XP_005391640 MODEL 8710156 pseudo LOC102021679 zinc finger CCHC domain-containing protein 7-like NW_004955492 3567660 3571346 + 102021679 AGCD01060698 MODEL 8723692 protein-coding Pus1 pseudouridine synthase 1 ENCODES a protein that exhibits chromatin binding (ortholog); mitochondrial tRNA pseudouridine(27/28) synthase activity (ortholog); pseudouridine synthase activity (ortholog); INVOLVED IN mRNA pseudouridine synthesis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); tRNA pseudouridine synthesis (ortholog); ASSOCIATED WITH Disease Progression (ortholog); genetic disease (ortholog); mitochondrial metabolism disease (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleolus (ortholog) NW_004955482 749265 756964 - 102024908 AGCD01057187;GBDF01159325;XM_005402971;XM_013503609;XM_013503610;XM_013503611;XM_013503612;XM_013503613 XP_005403028;XP_013359063;XP_013359064;XP_013359065;XP_013359066;XP_013359067 MODEL 8787380 protein-coding Smap2 small ArfGAP2 FOUND IN cytosol (ortholog) NW_004955537 203252 249694 + 102025395 AGCD01070855;AGCD01070856;GBDK01081285;XM_005410555;XM_013507809 XP_005410612;XP_013363263 MODEL 9029629 protein-coding Slc49a4 solute carrier family 49 member 4 INVOLVED IN pyridoxine transport (ortholog); ASSOCIATED WITH ovarian cancer (ortholog); renal cell carcinoma (ortholog); FOUND IN lysosomal membrane (ortholog) NW_004955427 22005161 22093700 + 102025270 AGCD01027464;GBBH01172313;GBCB01007670;XM_005386622 XP_005386679 MODEL 9053557 protein-coding Riiad1 regulatory subunit of type II PKA R-subunit domain containing 1 NW_004955589 686722 695805 - 102016332 AGCD01076180;AGCD01076181;GBDK01281968;XM_005414556;XM_005414557 XP_005414613;XP_005414614 MODEL 8878467 protein-coding LOC102027885 olfactory receptor 5I1 NW_004955511 773666 774610 - 102027885 AGCD01066342;XM_005407948 XP_005408005 MODEL 8717962 ncrna LOC102017591 uncharacterized LOC102017591 NW_004955510 6375997 6377249 - 102017591 AGCD01066306;GBDF01087880;XR_264412 MODEL 9052216 protein-coding Snrpc small nuclear ribonucleoprotein polypeptide C ENCODES a protein that exhibits protein homodimerization activity (ortholog); single-stranded RNA binding (ortholog); U1 snRNA binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH connective tissue disease (ortholog); mixed connective tissue disease (ortholog); systemic lupus erythematosus (ortholog); FOUND IN Cajal body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955437 2770251 2830871 + 102019321 AGCD01034286;AGCD01034287;AGCD01034288;GBDF01144864;XM_013516970;XM_013516971 XP_013372424;XP_013372425 MODEL 9042856 pseudo LOC102028904 uncharacterized LOC102028904 NW_004955552 2513686 2521865 - 102028904 AGCD01072819 MODEL 10189125 ncrna LOC106148175 uncharacterized LOC106148175 NW_004955417 9829421 9840599 - 106148175 AGCD01018056;GBDF01069298;XR_001233387 MODEL 8917479 protein-coding Ppt2 palmitoyl-protein thioesterase 2 ENCODES a protein that exhibits fatty acyl-CoA hydrolase activity (ortholog); palmitoyl hydrolase activity (ortholog); thiolester hydrolase activity (ortholog); ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog) NW_004955437 609901 630004 + 102014945 AGCD01034151;AGCD01034152;GBDJ01278109;XM_005389433;XM_005389435;XM_005389436;XM_005389437 XP_005389490;XP_005389492;XP_005389493;XP_005389494 MODEL 39133352 snrna U4 U4 spliceosomal RNA 8866244 protein-coding LOC102006914 olfactory receptor 1N2-like NW_004955419 5391871 5392860 + 102006914 AGCD01019805;XM_005382526 XP_005382583 MODEL 8969637 protein-coding Top6bl TOP6B like initiator of meiotic double strand breaks ENCODES a protein that exhibits DNA secondary structure binding (ortholog); INVOLVED IN meiotic DNA double-strand break formation (ortholog); reciprocal meiotic recombination (ortholog); ASSOCIATED WITH Hydatidiform Mole, Recurrent, 4 (ortholog); FOUND IN chromosome (ortholog) NW_004955422 18541350 18726269 - 102019710 AGCD01022951;AGCD01022952;AGCD01022953;AGCD01022954;AGCD01022955;AGCD01022956;AGCD01022957;AGCD01022958;AGCD01022959;AGCD01022960;GBDF01145171;XM_013513887;XM_013513888;XM_013513889;XM_013513890;XM_013513891;XM_013513892;XM_013513893;XM_013513894;XM_013513895;XM_013513896;XM_013513897;XM_013513898;XM_013513899;XM_013513900;XM_013513901;XM_013513902 XP_013369341;XP_013369342;XP_013369343;XP_013369344;XP_013369345;XP_013369346;XP_013369347;XP_013369348;XP_013369349;XP_013369350;XP_013369351;XP_013369352;XP_013369353;XP_013369354;XP_013369355;XP_013369356 MODEL 8968022 protein-coding Pate1 prostate and testis expressed 1 ENCODES a protein that exhibits acetylcholine receptor regulator activity (ortholog); INVOLVED IN regulation of neurotransmitter receptor activity (ortholog) NW_004955412 26801951 26804312 + 102004152 AGCD01013215;XM_005378656 XP_005378713 MODEL 8751134 protein-coding Slc12a4 solute carrier family 12 member 4 ENCODES a protein that exhibits ATP binding (ortholog); potassium:chloride symporter activity (ortholog); INVOLVED IN potassium ion transmembrane transport (ortholog) NW_004955484 8749194 8772599 + 102017576 AGCD01058396;GBDF01116937;XM_005403604 XP_005403661 MODEL 8911042 protein-coding LOC102028557 melanoma-associated antigen 10-like NW_004955498 5720953 5724891 + 102028557 AGCD01063091;GBDF01162545;XM_005406415 XP_005406472 MODEL 10353116 ncrna LOC106149920 uncharacterized LOC106149920 NW_004955457 8966562 9000955 - 106149920 AGCD01046924;AGCD01046925;GBDF01305887;XR_001236398 MODEL 8911392 ncrna LOC102015675 uncharacterized LOC102015675 NW_004955402 1143721 1150487 + 102015675 AGCD01000048;GBBH01111580;XR_001233981;XR_259010 MODEL 8783182 protein-coding Washc5 WASH complex subunit 5 INVOLVED IN endosomal transport (ortholog); lysosome organization (ortholog); meiotic spindle assembly (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia (ortholog); hereditary spastic paraplegia 10 (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); endoplasmic reticulum (ortholog) NW_004955461 145993 199274 - 102028387 AGCD01048791;AGCD01048792;GBCB01089643;XM_005397982;XM_005397983;XM_005397985;XM_013521306;XM_013521307 XP_005398039;XP_005398040;XP_005398042;XP_013376760;XP_013376761 MODEL 8876513 protein-coding Them4 thioesterase superfamily member 4 ENCODES a protein that exhibits long-chain fatty acyl-CoA hydrolase activity (ortholog); INVOLVED IN fatty acid metabolic process (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); regulation of mitochondrial membrane permeability involved in apoptotic process (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial intermembrane space (ortholog) NW_004955589 517489 545779 + 102011160 AGCD01076175;GBDF01122861;XM_005414537 XP_005414594 MODEL 9024105 protein-coding Plb1 phospholipase B1 ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); phosphatidylcholine lysophospholipase A1 activity (ortholog); retinyl-palmitate esterase activity (ortholog); INVOLVED IN diacylglycerol catabolic process (ortholog); phosphatidylcholine catabolic process (ortholog); phosphatidylethanolamine catabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; ASSOCIATED WITH prostate cancer (ortholog); rheumatoid arthritis (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog) NW_004955469 10370646 10511263 + 102013161 AGCD01052532;AGCD01052533;AGCD01052534;AGCD01052535;GBBH01117765;XM_005400528;XM_005400529;XM_005400530;XM_013522646;XM_013522647;XM_013522648;XM_013522649;XM_013522650;XM_013522651;XM_013522652 XP_005400585;XP_005400586;XP_005400587;XP_013378100;XP_013378101;XP_013378102;XP_013378103;XP_013378104;XP_013378105;XP_013378106 MODEL 8714068 protein-coding LOC102011483 tryptase-like NW_004955442 16039127 16040641 + 102011483 AGCD01037891;GBCE01068870;XM_005391590 XP_005391647 MODEL 8852951 protein-coding Rilp Rab interacting lysosomal protein ENCODES a protein that exhibits dynein light intermediate chain binding (ortholog); small GTPase binding (ortholog); sterol sensor activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); early endosome to late endosome transport (ortholog); endosome to lysosome transport (ortholog); FOUND IN endosome membrane (ortholog); late endosome (ortholog); late endosome membrane (ortholog) NW_004955481 1531175 1534794 + 102018598 AGCD01056834;AGCD01056835;GBDF01180428;XM_005402615;XM_005402616;XM_013503411;XM_013503412 XP_005402672;XP_005402673;XP_013358865;XP_013358866 MODEL 8728965 pseudo LOC102010310 eukaryotic translation initiation factor 3 subunit F-like NW_004955441 1151626 1157056 - 102010310 AGCD01036747 MODEL 10074625 ncrna LOC106147082 uncharacterized LOC106147082 NW_004955517 975901 994521 + 106147082 AGCD01067588;GBCE01037720;XR_001231812 MODEL 8784938 protein-coding Pp2d1 protein phosphatase 2C like domain containing 1 NW_004955430 12039391 12070440 - 102004505 AGCD01029473;AGCD01029474;AGCD01029475;AGCD01029476;AGCD01029477;AGCD01029478;AGCD01029479;GBDF01084590;XM_005387461 XP_005387518 MODEL 8884942 protein-coding Rassf5 Ras association domain family member 5 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); positive regulation of protein ubiquitination (ortholog); regulation of protein localization to nucleus (ortholog); ASSOCIATED WITH Kidney Neoplasms (ortholog); lung non-small cell carcinoma (ortholog); neuroblastoma (ortholog); FOUND IN nucleus (ortholog) NW_004955406 42086081 42159204 + 102019359 AGCD01006696;AGCD01006697;GBBH01164625;XM_005375394;XM_005375396 XP_005375451;XP_005375453 MODEL 8755824 protein-coding LOC102026211 mas-related G-protein coupled receptor member A-like NW_004955414 33474387 33495462 - 102026211 AGCD01015809;GBDJ01373226;XM_005380428;XM_005380429;XM_013511706 XP_005380485;XP_005380486;XP_013367160 MODEL 8713105 pseudo LOC102028907 histone acetyltransferase KAT2B-like NW_004955557 683826 708841 + 102028907 AGCD01073256;AGCD01073257;AGCD01073258 MODEL 8794019 protein-coding Rabgap1l RAB GTPase activating protein 1 like ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN regulation of cilium assembly (ortholog); regulation of protein localization (ortholog); ASSOCIATED WITH cholesteatoma (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cilium (ortholog); early endosome (ortholog); Golgi apparatus (ortholog) NW_004955406 14216549 14815052 + 102011730 AGCD01005960;AGCD01005961;AGCD01005962;AGCD01005963;AGCD01005964;AGCD01005965;AGCD01005966;AGCD01005967;AGCD01005968;AGCD01005969;AGCD01005970;AGCD01005971;GBDF01016451;XM_005374884;XM_005374886;XM_005374887;XM_005374888;XM_005374889;XM_005374890;XM_005374891;XM_005374892;XM_013520892;XM_013520898 XP_005374941;XP_005374943;XP_005374944;XP_005374945;XP_005374946;XP_005374947;XP_005374948;XP_005374949;XP_013376346;XP_013376352 MODEL 626189180 snorna SNORA46 small nucleolar RNA, H/ACA box 46 9026258 ncrna LOC102021680 uncharacterized LOC102021680 NW_004955422 20177741 20191497 - 102021680 AGCD01023068;GBDF01306760;XR_001234025;XR_001234026;XR_001234027;XR_001234028 MODEL 8848208 protein-coding Sdhaf2 succinate dehydrogenase complex assembly factor 2 INVOLVED IN mitochondrial electron transport, succinate to ubiquinone (ortholog); mitochondrial respiratory chain complex II assembly (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); Hereditary Paraganglioma-Pheochromocytoma Syndromes (ortholog); ovarian cancer (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955511 6125966 6139098 - 102012990 AGCD01066597;GBDK01084204;XM_005408148 XP_005408205 MODEL 8808913 protein-coding LOC102005466 mas-related G-protein coupled receptor member X1 NW_004955476 26643 27677 - 102005466 AGCD01055190;XM_005401897 XP_005401954 MODEL 10289397 ncrna LOC106149921 uncharacterized LOC106149921 NW_004955457 9000284 9008289 + 106149921 AGCD01046925;GBDJ01393429;XR_001236399 MODEL 9019134 protein-coding LOC102025827 mediator of RNA polymerase II transcription subunit 27 NW_004955513 1462308 1582894 - 102025827 AGCD01066857;AGCD01066858;GBDJ01423463;XM_013506710 XP_013362164 MODEL 8750770 protein-coding Prpf4 pre-mRNA splicing tri-snRNP complex factor PRPF4 INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH fundus dystrophy (ortholog); retinitis pigmentosa 70 (ortholog); substance-related disorder (ortholog); FOUND IN Cajal body (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955419 14190146 14206086 - 102025798 AGCD01020013;GBDF01190621;XM_005382685 XP_005382742 MODEL 8758854 protein-coding Psme1 proteasome activator subunit 1 ENCODES a protein that exhibits endopeptidase activator activity (ortholog); INVOLVED IN antigen processing and presentation of exogenous antigen (ortholog); regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); esophagus squamous cell carcinoma (ortholog); FOUND IN proteasome complex (ortholog) NW_004955409 36262114 36264996 - 102008384 AGCD01010454;GBCB01003421;XM_005377033;XM_013510409 XP_005377090;XP_013365863 MODEL 8892272 protein-coding Brinp2 BMP/retinoic acid inducible neural specific 2 INVOLVED IN cellular response to retinoic acid (ortholog); central nervous system neuron differentiation (ortholog); locomotion (ortholog); ASSOCIATED WITH oral squamous cell carcinoma (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog) NW_004955406 16748824 16840924 + 102018683 AGCD01006000;GBDJ01100677;XM_005374909 XP_005374966 MODEL 9000861 pseudo LOC102010721 TRMT1-like protein pseudogene NW_004955431 1011390 1013166 - 102010721 AGCD01029888 MODEL 9041349 ncrna LOC102023404 uncharacterized LOC102023404 NW_004955567 888493 891286 - 102023404 AGCD01074444;AGCD01074445;GBDF01085445;XR_265027 MODEL 8937117 protein-coding LOC102019162 protein FAM205A NW_004955472 1398923 1404948 + 102019162 AGCD01053390;GBDF01003693;XM_005401041 XP_005401098 MODEL 8719785 pseudo LOC102008440 high mobility group protein B1-like NW_004955427 3052920 3061332 - 102008440 AGCD01026912 MODEL 8852299 protein-coding Lhpp phospholysine phosphohistidine inorganic pyrophosphate phosphatase ENCODES a protein that exhibits inorganic diphosphate phosphatase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN phosphate-containing compound metabolic process (ortholog); FOUND IN cytosol (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955477 2480660 2606887 + 102003234 AGCD01055523;AGCD01055524;AGCD01055525;GBDI01228294;XM_005401973 XP_005402030 MODEL 8871572 protein-coding Pde6a phosphodiesterase 6A ENCODES a protein that exhibits 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); INVOLVED IN photoreceptor cell maintenance (ortholog); retina development in camera-type eye (ortholog); visual perception (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; visual phototransduction pathway; ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); Leber congenital amaurosis (ortholog); FOUND IN photoreceptor outer segment membrane (ortholog); rod photoreceptor phosphodiesterase 6 complex (ortholog) NW_004955415 4556636 4637070 + 102020108 AGCD01015974;AGCD01015975;AGCD01015976;GBDI01362005;XM_005380591;XM_005380592 XP_005380648;XP_005380649 MODEL 10150160 ncrna LOC106148176 uncharacterized LOC106148176 NW_004955417 9728839 9736624 - 106148176 AGCD01018055;XR_001233389 MODEL 8853253 ncrna LOC102003710 uncharacterized LOC102003710 NW_004955575 880017 890569 + 102003710 AGCD01075230;GBDF01020002;XR_265070 MODEL 9034297 ncrna LOC102030356 uncharacterized LOC102030356 NW_004955559 1784599 1789991 - 102030356 AGCD01073666;GBCQ01065979;XR_264999 MODEL 39133353 snrna U4 U4 spliceosomal RNA 8853203 protein-coding Rtn4rl2 reticulon 4 receptor like 2 ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); corpus callosum development (ortholog); negative regulation of neuron projection development (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); external side of plasma membrane (ortholog) NW_004955511 2463006 2474045 + 102029773 AGCD01066405;AGCD01066406;AGCD01066407;AGCD01066408;GBDF01148153;XM_013506377 XP_013361831 MODEL 8844817 protein-coding Trim24 tripartite motif containing 24 ENCODES a protein that exhibits chromatin binding (ortholog); estrogen response element binding (ortholog); histone H3K23ac reader activity (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); cellular response to estrogen stimulus (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN histone modification pathway; retinoic acid signaling pathway; ASSOCIATED WITH castration-resistant prostate carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); euchromatin (ortholog); mitochondrion (ortholog) NW_004955494 4308924 4421588 - 102009957 AGCD01061494;AGCD01061495;AGCD01061496;AGCD01061497;AGCD01061498;GBBH01187802;GBDI01127792;XM_013504966 XP_013360420 MODEL 8812655 protein-coding LOC102009554 kallikrein-4-like NW_004955558 1976188 2013876 + 102009554 AGCD01073492;AGCD01073493;AGCD01073494;AGCD01073495;AGCD01073496;XM_013508850 XP_013364304 MODEL 8969224 protein-coding LOC102006556 histone H3.1 NW_004955465 13374516 13388289 + 102006556 AGCD01050605;AGCD01050606;AGCD01050607;GBDJ01218778;XM_013521798;XM_013521799 XP_013377252;XP_013377253 MODEL 8959144 protein-coding Pate2 prostate and testis expressed 2 FOUND IN extracellular region (ortholog) NW_004955412 26842719 26844208 - 102004465 AGCD01013218;GBDF01020011;XM_013510991 XP_013366445 MODEL 8876625 pseudo LOC102015680 COP9 signalosome complex subunit 8-like NW_004955596 644486 646382 + 102015680 AGCD01076525 MODEL 10116913 ncrna LOC106148177 uncharacterized LOC106148177 NW_004955417 28521695 28536895 + 106148177 AGCD01018582;GBBH01226569;XR_001233390 MODEL 8822289 protein-coding LOC102027886 uncharacterized LOC102027886 NW_004955429 23766669 23776375 - 102027886 AGCD01029079;XM_013515363 XP_013370817 MODEL 8785285 protein-coding Slc12a5 solute carrier family 12 member 5 ENCODES a protein that exhibits ammonium channel activity (ortholog); chloride transmembrane transporter activity (ortholog); potassium:chloride symporter activity (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); chemical synaptic transmission (ortholog); chloride transport (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 34 (ortholog); epilepsy (ortholog); FOUND IN cell periphery (ortholog); dendrite membrane (ortholog); dendritic shaft (ortholog) NW_004955445 11252732 11290890 - 102022340 AGCD01039685;GBDK01041979;XM_005392389;XM_005392390;XM_005392391;XM_005392392 XP_005392446;XP_005392447;XP_005392448;XP_005392449 MODEL 8773613 protein-coding Emc4 ER membrane protein complex subunit 4 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); FOUND IN EMC complex (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955416 375736 380825 - 102019059 AGCD01016798;GBCB01023546;XM_005381153 XP_005381210 MODEL 9036390 protein-coding Pus10 pseudouridine synthase 10 ENCODES a protein that exhibits primary miRNA binding (ortholog); pseudouridine synthase activity (ortholog); tRNA pseudouridine synthase activity (ortholog); INVOLVED IN primary miRNA processing (ortholog); tRNA pseudouridine synthesis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955424 22830889 22899420 + 102026128 AGCD01024990;AGCD01024991;AGCD01024992;AGCD01024993;GBDF01195069;XM_005385749;XM_005385750;XM_005385751;XM_005385752;XM_013514667 XP_005385806;XP_005385807;XP_005385808;XP_005385809;XP_013370121 MODEL 8809921 protein-coding Smarca1 SNF2 related chromatin remodeling ATPase 1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent activity, acting on DNA (ortholog); ATP-dependent chromatin remodeler activity (ortholog); INVOLVED IN brain development (ortholog); chromatin remodeling (ortholog); neuron differentiation (ortholog); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN ATPase complex (ortholog); CERF complex (ortholog); chromatin (ortholog) NW_004955473 5498738 5572863 + 102014772 AGCD01053978;AGCD01053979;GBDK01226981;XM_005401264;XM_005401265;XM_005401267;XM_005401268;XM_005401270 XP_005401321;XP_005401322;XP_005401324;XP_005401325;XP_005401327 MODEL 8884400 protein-coding Snrpd1 small nuclear ribonucleoprotein D1 polypeptide ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH connective tissue disease (ortholog); nasopharynx carcinoma (ortholog); nephritis (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955402 10283970 10294869 + 102028039 AGCD01000256;AGCD01000257;AGCD01000258;GBDK01005303;XM_005372689;XM_005372690 XP_005372746;XP_005372747 MODEL 9060376 protein-coding Pate4 prostate and testis expressed 4 ENCODES a protein that exhibits acetylcholine receptor regulator activity (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); regulation of neurotransmitter receptor activity (ortholog); response to wounding (ortholog); FOUND IN acrosomal vesicle (ortholog); extracellular region (ortholog) NW_004955412 26912925 26914668 + 102024779 AGCD01013224;GBDF01280505;XM_013510981 XP_013366435 MODEL 8796740 pseudo LOC102010312 transcription and mRNA export factor ENY2 pseudogene NW_004955553 1476433 1476725 - 102010312 AGCD01072886 MODEL 8998848 pseudo LOC102011081 SH3 domain-binding glutamic acid-rich-like protein pseudogene NW_004955406 24054455 24054920 + 102011081 AGCD01006188 MODEL 8705945 protein-coding LOC102012698 zinc finger protein 709-like NW_004955569 603589 617354 + 102012698 AGCD01074601;AGCD01074602;XM_013509369 XP_013364823 MODEL 8775106 ncrna LOC102010723 uncharacterized LOC102010723 NW_004955518 2285051 2292236 + 102010723 AGCD01067775;GBBH01218705;XR_264568 MODEL 8940556 pseudo LOC102026212 40S ribosomal protein S2 pseudogene NW_004955473 6794845 6795524 - 102026212 AGCD01054005 MODEL 9023783 protein-coding Serpinb5 serpin family B member 5 INVOLVED IN extracellular matrix organization (ortholog); morphogenesis of an epithelium (ortholog); prostate gland morphogenesis (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Colonic Neoplasms (ortholog); Colorectal Neoplasms (ortholog); FOUND IN apical part of cell (ortholog); cell surface (ortholog); cornified envelope (ortholog) NW_004955402 47248665 47276017 + 102023762 AGCD01001178;GBBH01168613;XM_005373029;XM_013511236;XM_013511239;XM_013511244 XP_005373086;XP_013366690;XP_013366693;XP_013366698 MODEL 9011189 protein-coding Rassf6 Ras association domain family member 6 INVOLVED IN positive regulation of apoptotic process (ortholog); regulation of apoptotic process (ortholog) NW_004955657 49115 59237 - 102014850 AGCD01077855;AGCD01077856;AGCD01077857;GBDI01028020;XM_005415062;XM_005415063 XP_005415119;XP_005415120 MODEL 8935477 protein-coding Ppa1 inorganic pyrophosphatase 1 ENCODES a protein that exhibits inorganic diphosphate phosphatase activity (ortholog); MAP kinase serine/threonine phosphatase activity (ortholog); pyrophosphatase activity (ortholog) NW_004955437 21027516 21057712 + 102025173 AGCD01034895;AGCD01034896;GBCC01028794;GBDI01004311;XM_013517122 XP_013372576 MODEL 8833439 protein-coding LOC102027209 olfactory receptor 13A1-like NW_004955507 6342020 6342958 - 102027209 AGCD01065707;XM_005407709 XP_005407766 MODEL 9064162 ncrna LOC102028560 uncharacterized LOC102028560 NW_004955428 655035 657732 - 102028560 AGCD01027581;GBCE01113273;XR_261289 MODEL 8973043 protein-coding Topaz1 testis and ovary specific TOPAZ 1 INVOLVED IN apoptotic process (ortholog); lncRNA transcription (ortholog); spermatocyte division (ortholog) NW_004955420 27048650 27106983 - 102011775 AGCD01021449;GBDF01250001;XM_013513516;XM_013513517;XM_013513518 XP_013368970;XP_013368971;XP_013368972 MODEL 8883002 protein-coding Slc4a1 solute carrier family 4 member 1 (Diego blood group) ENCODES a protein that exhibits actin binding (ortholog); ankyrin binding (ortholog); bicarbonate transmembrane transporter activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); blood coagulation (ortholog); chloride transmembrane transport (ortholog); ASSOCIATED WITH acanthocytosis (ortholog); Alkalosis (ortholog); autoimmune hemolytic anemia (ortholog); FOUND IN ankyrin-1 complex (ortholog); basolateral plasma membrane (ortholog); cell surface (ortholog) NW_004955451 17318600 17330943 - 102011722 AGCD01043740;AGCD01043741;GBDF01076823;XM_005394528;XM_005394529;XM_013519370 XP_005394585;XP_005394586;XP_013374824 MODEL 39133843 snorna SNORA47 small nucleolar RNA, H/ACA box 47 8907210 protein-coding Repin1 replication initiator 1 ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of D-glucose import across plasma membrane (ortholog); regulation of fatty acid transport (ortholog); regulation of transcription by RNA polymerase II (ortholog); FOUND IN cytosol (ortholog); cytosolic ribosome (ortholog); lipid droplet (ortholog) NW_004955491 4973192 4977970 + 102018610 AGCD01060466;GBDF01002881;XM_005404768;XM_005404772;XM_005404774;XM_013504594 XP_005404825;XP_005404829;XP_005404831;XP_013360048 MODEL 8843090 pseudo LOC102011486 RNA-binding protein 4B pseudogene NW_004955446 4882192 4882609 - 102011486 AGCD01040049 MODEL 8854618 protein-coding Wasl WASP like actin nucleation promoting factor ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament polymerization (ortholog); dendritic spine morphogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH atopic dermatitis (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN actin cap (ortholog); cell leading edge (ortholog); cytoplasmic vesicle (ortholog) NW_004955479 5167851 5200512 - 102015717 AGCD01056340;GBCQ01037898;XM_005402337 XP_005402394 MODEL 8768937 protein-coding LOC102006557 putative olfactory receptor 2W6 NW_004955465 13441807 13444827 + 102006557 AGCD01050609;XM_005399012 XP_005399069 MODEL 10103369 ncrna LOC106149922 uncharacterized LOC106149922 NW_004955406 12451365 12453416 - 106149922 AGCD01005919;GBDF01009943;XR_001236400 MODEL 8715726 protein-coding Sdhaf3 succinate dehydrogenase complex assembly factor 3 FOUND IN mitochondrion (ortholog) NW_004955432 13512594 13586984 + 102021790 AGCD01031019;AGCD01031020;AGCD01031021;AGCD01031022;AGCD01031023;AGCD01031024;AGCD01031025;GBDF01176739;XM_005388076 XP_005388133 MODEL 8880839 protein-coding Plbd1 phospholipase B domain containing 1 ENCODES a protein that exhibits aminopeptidase activity (ortholog); glycerophospholipase activity (ortholog); INVOLVED IN lysosomal protein catabolic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN extracellular region (ortholog); lysosome (ortholog) NW_004955413 11266589 11326565 - 102026961 AGCD01013956;AGCD01013957;GBCE01152183;XM_013511442 XP_013366896 MODEL 10328605 ncrna LOC106147083 uncharacterized LOC106147083 NW_004955517 2189871 2202540 + 106147083 AGCD01067619;GBDF01072356;XR_001231813;XR_001231814;XR_001231815;XR_001231816 MODEL 8844224 ncrna LOC102018746 uncharacterized LOC102018746 NW_004955426 16039687 16052875 + 102018746 AGCD01026457;AGCD01026458;AGCD01026459;GBDF01075223;XR_261198 MODEL 8865540 protein-coding Prpf40a pre-mRNA processing factor 40A ENCODES a protein that exhibits proline-rich region binding (ortholog); FOUND IN nuclear matrix (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955440 18083838 18128701 - 102008770 AGCD01036595;AGCD01036596;GBCE01097815;GBDI01081076;XM_005390816 XP_005390873 MODEL 8885815 protein-coding Rilpl1 Rab interacting lysosomal protein like 1 INVOLVED IN epithelial cell morphogenesis (ortholog); positive regulation of neuron apoptotic process (ortholog); protein transport from ciliary membrane to plasma membrane (ortholog); ASSOCIATED WITH oculopharyngodistal myopathy 4 (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955482 5424898 5455145 + 102016918 AGCD01057330;GBCB01004251;GBCQ01095809;XM_005403032;XM_005403033;XM_005403034;XM_005403035;XM_005403036 XP_005403089;XP_005403090;XP_005403091;XP_005403092;XP_005403093 MODEL 9036435 protein-coding Topbp1 DNA topoisomerase II binding protein 1 ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); identical protein binding (ortholog); phosphorylation-dependent protein binding (ortholog); INVOLVED IN broken chromosome clustering (ortholog); chromosome organization (ortholog); DNA damage checkpoint signaling (ortholog); ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); Pulmonary Arterial Hypertension (ortholog); FOUND IN BRCA1-B complex (ortholog); chromosome (ortholog); condensed nuclear chromosome (ortholog) NW_004955501 4907687 4974995 + 102028214 AGCD01064148;GBDF01083772;XM_005406814;XM_005406815;XM_013505749;XM_013505750;XM_013505751;XM_013505753;XR_264253 XP_005406871;XP_005406872;XP_013361203;XP_013361204;XP_013361205;XP_013361207 MODEL 9065969 protein-coding Brinp3 BMP/retinoic acid inducible neural specific 3 INVOLVED IN cellular response to retinoic acid (ortholog); central nervous system neuron differentiation (ortholog); exploration behavior (ortholog); ASSOCIATED WITH aggressive periodontitis (ortholog); cerebral infarction (ortholog); Chronic Periodontitis (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog) NW_004955406 27870115 28240328 - 102015074 AGCD01006290;AGCD01006291;AGCD01006292;AGCD01006293;AGCD01006294;AGCD01006295;GBDF01307752;XM_005375093;XM_005375094;XM_005375095 XP_005375150;XP_005375151;XP_005375152 MODEL 8991350 pseudo LOC102028909 ribosomal protein S6 kinase beta-1-like NW_004955562 1425059 1426727 - 102028909 AGCD01073980 MODEL 8836384 protein-coding LOC102017598 metallothionein-I, hippocampal-like NW_004955433 14372766 14374000 + 102017598 AGCD01031721;GBDF01147217;XM_005388356 XP_005388413 MODEL 8947773 pseudo LOC102021682 ATM interactor pseudogene NW_004955422 20655541 20656652 + 102021682 AGCD01023085 MODEL 9015155 ncrna LOC102009555 uncharacterized LOC102009555 NW_004955443 5716273 5723524 + 102009555 AGCD01038243;GBDF01305708;XR_001235476;XR_262177 MODEL 8849501 protein-coding LOC102026215 interferon-induced transmembrane protein 3-like NW_004955476 11689642 11690838 - 102026215 AGCD01055472;GBCE01000009;XM_005401874 XP_005401931 MODEL 8952215 pseudo LOC102015681 putative 60S ribosomal protein L13a protein RPL13AP3 NW_004955402 7292136 7295989 - 102015681 AGCD01000170 MODEL 8963858 protein-coding Pptc7 protein phosphatase targeting COQ7 ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN negative regulation of mitophagy (ortholog); positive regulation of ubiquinone biosynthetic process (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955482 7445218 7484939 - 102004711 AGCD01057468;AGCD01057469;GBCB01043299;GBCE01016802;XM_013503656 XP_013359110 MODEL 8804866 protein-coding LOC102006916 olfactory receptor 13F1 NW_004955419 21914434 21915393 - 102006916 AGCD01020292;XM_005382939 XP_005382996 MODEL 8888662 protein-coding Sdhaf4 succinate dehydrogenase complex assembly factor 4 ENCODES a protein that exhibits enzyme activator activity (ortholog); INVOLVED IN cellular respiration (ortholog); innate immune response (ortholog); mitochondrial respiratory chain complex II assembly (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN mitochondrion (ortholog) NW_004955488 5628297 5644384 + 102028304 AGCD01059625;GBDF01050832;XM_005404476 XP_005404533 MODEL 8902344 pseudo LOC102011085 dynein light chain 1, cytoplasmic-like NW_004955407 27230910 27231275 + 102011085 AGCD01007548 MODEL 8952288 pseudo LOC102018749 serine/threonine-protein kinase WNK1-like NW_004955427 10801144 10809468 - 102018749 AGCD01027157 MODEL 8784359 protein-coding Smarca2 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); chromatin binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN aortic smooth muscle cell differentiation (ortholog); hematopoietic stem cell homeostasis (ortholog); negative regulation of cell growth (ortholog); PARTICIPATES IN histone modification pathway; SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Arnold-Chiari Malformation (ortholog); autism spectrum disorder (ortholog); FOUND IN chromatin (ortholog); nBAF complex (ortholog); npBAF complex (ortholog) NW_004955434 6420850 6592797 + 102015233 AGCD01032211;AGCD01032212;AGCD01032213;GBDF01089445;XM_005388600;XM_005388601;XM_005388602;XM_005388603;XM_005388604;XM_005388605;XM_005388606;XM_005388607;XM_013516311 XP_005388657;XP_005388658;XP_005388659;XP_005388660;XP_005388661;XP_005388662;XP_005388663;XP_005388664;XP_013371765 MODEL 8944969 protein-coding Lhx1 LIM homeobox 1 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN anatomical structure formation involved in morphogenesis (ortholog); anatomical structure morphogenesis (ortholog); anterior/posterior axis specification (ortholog); ASSOCIATED WITH Female Urogenital Diseases (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog); protein-containing complex (ortholog); transcription regulator complex (ortholog) NW_004955451 1037936 1048501 - 102028487 AGCD01042958;GBCQ01073234;XM_005393940 XP_005393997 MODEL 9013193 protein-coding Pde6b phosphodiesterase 6B ENCODES a protein that exhibits 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); INVOLVED IN detection of light stimulus (ortholog); entrainment of circadian clock by photoperiod (ortholog); retina development in camera-type eye (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; visual phototransduction pathway; ASSOCIATED WITH Animal Disease Models (ortholog); cone-rod dystrophy (ortholog); cone-rod dystrophy 1 (ortholog); FOUND IN photoreceptor outer segment (ortholog); photoreceptor outer segment membrane (ortholog); rod photoreceptor phosphodiesterase 6 complex (ortholog) NW_004955514 234972 279420 + 102006266 AGCD01067002;AGCD01067003;AGCD01067004;AGCD01067005;GBDF01265565;XM_005408671 XP_005408728 MODEL 8972879 ncrna LOC102028562 uncharacterized LOC102028562 NW_004955429 15972261 15985132 + 102028562 AGCD01028824;GBBH01189216;XR_261340 MODEL 8803946 protein-coding LOC102028913 dapper homolog 3-like NW_004955574 710012 717852 - 102028913 AGCD01075125;AGCD01075126;GBDF01154132;GBDJ01177439;XM_013509565;XM_013509566 XP_013365019;XP_013365020 MODEL 8751996 protein-coding Serpinb7 serpin family B member 7 INVOLVED IN positive regulation of collagen biosynthetic process (ortholog); positive regulation of glomerular mesangial cell proliferation (ortholog); positive regulation of platelet-derived growth factor production (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); familial encephalopathy with neuroserpin inclusion bodies (ortholog); genetic disease (ortholog) NW_004955402 47599503 47649537 + 102025961 AGCD01001191;AGCD01001192;GBCC01008982;XM_005373035;XM_013511256 XP_005373092;XP_013366710 MODEL 8786281 protein-coding Them5 thioesterase superfamily member 5 ENCODES a protein that exhibits long-chain fatty acyl-CoA hydrolase activity (ortholog); INVOLVED IN long-chain fatty-acyl-CoA metabolic process (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955589 546592 571844 + 102011490 AGCD01076175;AGCD01076176;GBDJ01020946;XM_005414538;XM_005414543;XM_005414545;XM_013509937;XM_013509938 XP_005414595;XP_005414600;XP_005414602;XP_013365391;XP_013365392 MODEL 8709578 protein-coding LOC102025832 vomeronasal type-2 receptor 116-like NW_004955432 4760218 4786103 + 102025832 AGCD01030744;XM_013515917 XP_013371371 MODEL 8879661 pseudo LOC102017599 phosphatidylinositol-glycan biosynthesis class F protein pseudogene NW_004955525 636451 637094 - 102017599 AGCD01069002 MODEL 8768814 protein-coding Ppa2 inorganic pyrophosphatase 2 ENCODES a protein that exhibits inorganic diphosphate phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN diphosphate metabolic process (ortholog); regulation of mitochondrial membrane potential (ortholog); ASSOCIATED WITH Alcohol-Induced Sudden Cardiac Failure (ortholog); genetic disease (ortholog); Mitochondrial Cardiomyopathy (ortholog); FOUND IN mitochondrion (ortholog); synapse (ortholog) NW_004955496 3765038 3831312 + 102029529 AGCD01062299;AGCD01062300;AGCD01062301;GBBH01119516;XM_005406284 XP_005406341 MODEL 8812226 protein-coding LOC102019163 uncharacterized LOC102019163 NW_004955414 24573632 24634114 + 102019163 AGCD01015548;AGCD01015549;AGCD01015550;XM_005380524 XP_005380581 MODEL 8772561 pseudo LOC102008442 26S proteasome non-ATPase regulatory subunit 14 pseudogene NW_004955428 13615029 13616146 - 102008442 AGCD01027959 MODEL 8927963 ncrna LOC102010314 uncharacterized LOC102010314 NW_004955555 108802 119271 + 102010314 AGCD01073024;GBBH01226678;XR_264947;XR_264948 MODEL 8979075 protein-coding LOC102003711 protein FAM170A-like NW_004955582 198318 205621 + 102003711 AGCD01075748;AGCD01075749;GBDF01050789;XM_005414281;XM_005414282 XP_005414338;XP_005414339 MODEL 8945454 protein-coding Wbp1 WW domain binding protein 1 ENCODES a protein that exhibits WW domain binding (ortholog) NW_004955424 11321393 11323651 - 102027420 AGCD01024562;GBCB01039025;XM_005385504;XM_005385505 XP_005385561;XP_005385562 MODEL 9060940 protein-coding Plbd2 phospholipase B domain containing 2 FOUND IN lysosomal lumen (ortholog); lysosome (ortholog) NW_004955482 9630300 9643212 + 102017339 AGCD01057577;GBBH01031135;GBDK01000319;XM_013503595 XP_013359049 MODEL 8725211 pseudo LOC102005472 CWF19-like protein 2 NW_004955481 1830281 1834787 + 102005472 AGCD01056855 MODEL 8912011 pseudo LOC102012703 transmembrane protease serine 11E-like NW_004955447 5103263 5144409 + 102012703 AGCD01040741;AGCD01040742;AGCD01040743 MODEL 39133355 snrna U4 U4 spliceosomal RNA 8962356 ncrna LOC102027210 uncharacterized LOC102027210 NW_004955429 15716712 15719141 - 102027210 AGCD01028817;GBDF01277872;XR_261339 MODEL 10348606 ncrna LOC106148178 uncharacterized LOC106148178 NW_004955417 21563883 21585303 - 106148178 AGCD01018400;AGCD01018401;GBDK01383005;XR_001233391 MODEL 8898142 protein-coding Patj PATJ crumbs cell polarity complex component INVOLVED IN establishment of apical/basal cell polarity (ortholog); microtubule organizing center organization (ortholog); positive regulation of epithelial cell migration (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); substance-related disorder (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); bicellular tight junction (ortholog) NW_004955423 27408334 27637065 - 102012978 AGCD01024126;AGCD01024127;AGCD01024128;AGCD01024129;AGCD01024130;AGCD01024131;AGCD01024132;AGCD01024133;AGCD01024134;AGCD01024135;GBCE01009689;XM_005385343;XM_005385344;XM_013514443;XM_013514444;XM_013514445;XM_013514446;XM_013514447;XM_013514448 XP_005385400;XP_005385401;XP_013369897;XP_013369898;XP_013369899;XP_013369900;XP_013369901;XP_013369902 MODEL 9006531 protein-coding Rilpl2 Rab interacting lysosomal protein like 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN epithelial cell morphogenesis (ortholog); protein transport from ciliary membrane to plasma membrane (ortholog); FOUND IN centrosome (ortholog); cilium (ortholog); cytosol (ortholog) NW_004955482 5470965 5482600 + 102018398 AGCD01057333;AGCD01057334;AGCD01057335;AGCD01057336;GBBH01060488;XM_005403038 XP_005403095 MODEL 8940773 protein-coding Rassf7 Ras association domain family member 7 FOUND IN centriolar satellite (ortholog) NW_004955476 11485308 11487840 - 102012318 AGCD01055460;GBBH01061456;XM_013502923 XP_013358377 MODEL 8954356 protein-coding Rabgef1 RAB guanine nucleotide exchange factor 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN dendritic transport (ortholog); endosomal transport (ortholog); negative regulation of inflammatory response (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); early endosome membrane (ortholog) NW_004955456 8648925 8716337 + 102008289 AGCD01046496;AGCD01046497;AGCD01046498;AGCD01046499;GBBH01126041;GBCB01061813;XM_005396718 XP_005396775 MODEL 8843356 protein-coding Ppwd1 peptidylprolyl isomerase domain and WD repeat containing 1 ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear body (ortholog); spliceosomal complex (ortholog) NW_004955446 3511152 3531584 - 102020298 AGCD01040022;GBDJ01017167;XM_005392628;XM_013518411;XM_013518412 XP_005392685;XP_013373865;XP_013373866 MODEL 8843061 protein-coding Brip1 BRCA1 interacting DNA helicase 1 ENCODES a protein that exhibits 5'-3' DNA helicase activity (ortholog); ATP hydrolysis activity (ortholog); chromatin binding (ortholog); INVOLVED IN cellular response to angiotensin (ortholog); cellular response to hypoxia (ortholog); cellular response to vitamin (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); Alzheimer's disease (ortholog); Bone Metastasis (ortholog); FOUND IN BRCA1-B complex (ortholog); cytoplasm (ortholog); nuclear membrane (ortholog) NW_004955451 2705834 2820610 - 102010854 AGCD01043022;AGCD01043023;GBDK01359826;XM_013519414 XP_013374868 MODEL 8811794 protein-coding LOC102027887 olfactory receptor 4C11-like NW_004955511 427355 428281 - 102027887 AGCD01066331;XM_005408190 XP_005408247 MODEL 8905887 protein-coding Trim25 tripartite motif containing 25 ENCODES a protein that exhibits RIG-I binding (ortholog); transcription coactivator activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to leukemia inhibitory factor (ortholog); cytoplasmic pattern recognition receptor signaling pathway (ortholog); ASSOCIATED WITH Joubert syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955451 5918287 5934252 + 102012821 AGCD01043189;AGCD01043190;GBDJ01024909;XM_005394067 XP_005394124 MODEL 9063252 protein-coding Slc12a6 solute carrier family 12 member 6 ENCODES a protein that exhibits potassium:chloride symporter activity (ortholog); protein kinase binding (ortholog); INVOLVED IN cell volume homeostasis (ortholog); cellular hypotonic salinity response (ortholog); cellular response to glucose stimulus (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH agenesis of the corpus callosum with peripheral neuropathy (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth Disease Axonal Type 2II (ortholog); FOUND IN axon (ortholog); basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955416 277215 375812 + 102019387 AGCD01016792;AGCD01016793;AGCD01016794;AGCD01016795;AGCD01016796;AGCD01016797;AGCD01016798;GBDF01049182;XM_005381156 XP_005381213 MODEL 8909923 ncrna LOC102021687 uncharacterized LOC102021687 NW_004955500 6724671 6728915 + 102021687 AGCD01063892;GBDJ01218162;XR_001231489 MODEL 8795014 pseudo LOC102023406 kinesin-like protein KIF20B pseudogene NW_004955568 1555117 1559011 - 102023406 AGCD01074547 MODEL 41410896 snorna SNORA49 small nucleolar RNA, H/ACA box 49 9060024 ncrna LOC102009556 uncharacterized LOC102009556 NW_004955444 690141 694617 - 102009556 AGCD01038682;GBCE01026109;XR_262224;XR_262225 MODEL 9010383 protein-coding LOC102011487 olfactory receptor 2B6-like NW_004955576 1333991 1334947 + 102011487 AGCD01075372;XM_005413953 XP_005414010 MODEL 10383557 ncrna LOC106149923 uncharacterized LOC106149923 NW_004955457 10005195 10025117 + 106149923 AGCD01046947;XR_001236402;XR_001236403 MODEL 8967821 protein-coding LOC102026218 putative olfactory receptor 3A4 NW_004955481 93480 94415 - 102026218 AGCD01056780;XM_013503378 XP_013358832 MODEL 8954718 protein-coding Slc4a10 solute carrier family 4 member 10 ENCODES a protein that exhibits sodium,bicarbonate:chloride antiporter activity (ortholog); sodium:bicarbonate symporter activity (ortholog); INVOLVED IN brain morphogenesis (ortholog); locomotory exploration behavior (ortholog); multicellular organism growth (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cognitive disorder (ortholog); epilepsy (ortholog); FOUND IN apical dendrite (ortholog); apical plasma membrane (ortholog); axon terminus (ortholog) NW_004955449 11879070 12159981 - 102019870 AGCD01042094;AGCD01042095;AGCD01042096;AGCD01042097;AGCD01042098;AGCD01042099;AGCD01042100;AGCD01042101;AGCD01042102;AGCD01042103;AGCD01042104;AGCD01042105;AGCD01042106;GBBH01068682;XM_005393323;XM_005393324;XM_005393329 XP_005393380;XP_005393381;XP_005393386 MODEL 8932406 protein-coding Reps1 RALBP1 associated Eps domain containing 1 ENCODES a protein that exhibits SH3 domain binding (ortholog); ASSOCIATED WITH neurodegeneration with brain iron accumulation (ortholog); Neurodegeneration with Brain Iron Accumulation 7 (ortholog); FOUND IN clathrin-coated pit (ortholog); plasma membrane (ortholog) NW_004955436 20677676 20752842 + 102014485 AGCD01034035;AGCD01034036;AGCD01034037;AGCD01034038;GBBH01164522;GBBH01164524;XM_005389265;XM_005389266 XP_005389322;XP_005389323 MODEL 10214953 ncrna LOC106147084 uncharacterized LOC106147084 NW_004955402 10998277 11036252 + 106147084 AGCD01000295;XR_001231833 MODEL 8704858 protein-coding Serpinb8 serpin family B member 8 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN epithelial cell-cell adhesion (ortholog); negative regulation of endopeptidase activity (ortholog); ASSOCIATED WITH peeling skin syndrome (ortholog); peeling skin syndrome 5 (ortholog); psoriasis (ortholog); FOUND IN cytosol (ortholog) NW_004955402 47761900 47781281 + 102026819 AGCD01001193;GBDJ01355314;XM_005373037;XM_005373038;XM_005373039;XM_013511271 XP_005373094;XP_005373095;XP_005373096;XP_013366725 MODEL 8851286 protein-coding LOC102030357 basic proline-rich protein-like NW_004955444 18169935 18200386 + 102030357 AGCD01039229;AGCD01039230;GBDF01076084;XM_005392184;XM_013518184;XR_001235515;XR_001235516;XR_001235517;XR_001235518;XR_001235519;XR_001235520 XP_005392241;XP_013373638 MODEL 8904057 protein-coding Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase ENCODES a protein that exhibits antigen binding (ortholog); DNA binding (ortholog); DNA topoisomerase binding (ortholog); INVOLVED IN DNA damage response (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ortholog); ASSOCIATED WITH Choroideremia (ortholog); COVID-19 (ortholog); fundus dystrophy (ortholog); FOUND IN centriole (ortholog); ciliary basal body (ortholog); gamma-tubulin complex (ortholog) NW_004955472 3073090 3076607 + 102015004 AGCD01053501;GBBH01173020;GBDF01118627;XM_013522944 XP_013378398 MODEL 8720989 pseudo LOC102008445 proteasome assembly chaperone 1-like NW_004955431 13381828 13382937 - 102008445 AGCD01030304 MODEL 9058092 pseudo LOC102018751 protein DBF4 homolog A pseudogene NW_004955428 18917893 18919918 - 102018751 AGCD01028074 MODEL 8769604 protein-coding Psme2 proteasome activator subunit 2 ENCODES a protein that exhibits endopeptidase activator activity (ortholog); identical protein binding (ortholog); INVOLVED IN antigen processing and presentation of exogenous antigen (ortholog); regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH esophagus squamous cell carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN proteasome complex (ortholog) NW_004955409 36252847 36257021 + 102009919 AGCD01010454;GBDF01048370;XM_005377038 XP_005377095 MODEL 8841157 protein-coding Sdhb succinate dehydrogenase complex iron sulfur subunit B ENCODES a protein that exhibits 2 iron, 2 sulfur cluster binding (ortholog); 3 iron, 4 sulfur cluster binding (ortholog); 4 iron, 4 sulfur cluster binding (ortholog); INVOLVED IN respiratory electron transport chain (ortholog); succinate metabolic process (ortholog); tricarboxylic acid cycle (ortholog); PARTICIPATES IN altered citric acid cycle pathway; citric acid cycle pathway; electron transport chain pathway; ASSOCIATED WITH acute myocardial infarction (ortholog); bilateral breast cancer (ortholog); breast cancer (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955527 1769280 1792496 + 102025285 AGCD01069414;AGCD01069415;GBCB01005239;XM_005409822 XP_005409879 MODEL 8876798 ncrna LOC102024432 uncharacterized LOC102024432 NW_004955460 10071259 10078235 - 102024432 AGCD01048571;AGCD01048572;GBDF01024354;XR_001236506;XR_001236507 MODEL 8930397 protein-coding Pus3 pseudouridine synthase 3 ENCODES a protein that exhibits pseudouridine synthase activity (ortholog); tRNA pseudouridine(38/39) synthase activity (ortholog); INVOLVED IN tRNA pseudouridine synthesis (ortholog); ASSOCIATED WITH Neurodevelopmental Disorder with Microcephaly and Gray Sclerae (ortholog) NW_004955412 26941837 26951524 - 102026732 AGCD01013224;GBDF01146206;XM_005378481;XM_005378482 XP_005378538;XP_005378539 MODEL 8912037 protein-coding Snrpd2 small nuclear ribonucleoprotein D2 polypeptide ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH systemic lupus erythematosus (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); methylosome (ortholog) NW_004955574 157769 164947 - 102018238 AGCD01075087;AGCD01075088;GBCC01043779;XM_005413802 XP_005413859 MODEL 8880883 protein-coding LOC102028563 olfactory receptor 5W2-like NW_004955511 837383 838321 + 102028563 AGCD01066345;XM_005407950 XP_005408007 MODEL 8925412 protein-coding LOC102006931 uncharacterized LOC102006931 NW_004955423 27013477 27045496 - 102006931 AGCD01024112;AGCD01024113;GBCB01041473;GBCB01041476;XM_013514386 XP_013369840 MODEL 8984237 protein-coding LOC102027890 uncharacterized LOC102027890 NW_004955518 2451758 2460441 + 102027890 AGCD01067778;GBDF01223179;XM_005409121 XP_005409178 MODEL 8917601 protein-coding Them6 thioesterase superfamily member 6 NW_004955454 1433644 1438156 + 102020081 AGCD01044969;GBCB01002054;XM_005395736 XP_005395793 MODEL 8744166 protein-coding LOC102010724 putative inactive carboxylesterase 4 NW_004955433 13538663 13552591 - 102010724 AGCD01031695;XM_013516106 XP_013371560 MODEL 8768302 protein-coding Ppara peroxisome proliferator activated receptor alpha ENCODES a protein that exhibits DNA-binding transcription activator activity (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN behavioral response to nicotine (ortholog); cellular response to fructose stimulus (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); acute kidney tubular necrosis (ortholog); alcohol use disorder (ortholog); FOUND IN fibrillar center (ortholog); nuclear body (ortholog); nucleus (ortholog) NW_004955413 30306563 30366245 + 102008082 AGCD01014605;AGCD01014606;AGCD01014607;AGCD01014608;GBDJ01304514;XM_005379496;XM_005379497;XM_005379498;XM_005379499;XM_005379500;XM_013511380 XP_005379553;XP_005379554;XP_005379555;XP_005379556;XP_005379557;XP_013366834 MODEL 9064074 pseudo LOC102023407 zinc finger and BTB domain-containing protein 44 pseudogene NW_004955445 3042212 3043542 + 102023407 AGCD01039378 MODEL 8707882 protein-coding LOC102011087 olfactory receptor 9K2-like NW_004955458 2223510 2224451 + 102011087 AGCD01047218;XM_005397237 XP_005397294 MODEL 8961889 protein-coding LOC102010318 seminal vesicle major clotting proteins-like NW_004955445 12149377 12156385 - 102010318 AGCD01039740;AGCD01039741;AGCD01039742;XM_005392442 XP_005392499 MODEL 9045371 protein-coding Emc6 ER membrane protein complex subunit 6 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); FOUND IN EMC complex (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955467 13144659 13146434 - 102020231 AGCD01051667;GBBH01164107;XM_005399715 XP_005399772 MODEL 8718094 protein-coding Slc4a11 solute carrier family 4 member 11 ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); borate efflux transmembrane transporter activity (ortholog); protein dimerization activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); borate transport (ortholog); cellular hypotonic response (ortholog); ASSOCIATED WITH congenital hereditary endothelial dystrophy of cornea (ortholog); corneal dystrophy (ortholog); Corneal Dystrophy, Fuchs Endothelial, 4 (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955415 14123021 14133437 - 102025571 AGCD01016288;GBCE01153106;GBDK01418034;XM_013512257 XP_013367711 MODEL 8726437 protein-coding Lhx2 LIM homeobox 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN anatomical structure formation involved in morphogenesis (ortholog); axon extension (ortholog); axon guidance (ortholog); ASSOCIATED WITH rheumatoid arthritis (ortholog); FOUND IN nucleus (ortholog) NW_004955419 3999364 4019543 - 102025581 AGCD01019745;AGCD01019746;AGCD01019747;GBBH01168279;GBDF01257508;XM_005382498 XP_005382555 MODEL 10096412 ncrna LOC106148179 uncharacterized LOC106148179 NW_004955417 6461077 6658311 - 106148179 AGCD01017986;AGCD01017987;XR_001233392 MODEL 8776417 protein-coding Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent activity, acting on DNA (ortholog); ATP-dependent chromatin remodeler activity (ortholog); INVOLVED IN aorta development (ortholog); aortic smooth muscle cell differentiation (ortholog); blastocyst growth (ortholog); PARTICIPATES IN altered SWI/SNF family mediated chromatin remodeling pathway; cortisol signaling pathway; histone modification pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); atrial heart septal defect (ortholog); autistic disorder (ortholog); FOUND IN chromatin (ortholog); euchromatin (ortholog); fibrillar center (ortholog) NW_004955495 2021671 2105155 + 102015538 AGCD01061746;AGCD01061747;GBCB01040754;XM_013505175;XM_013505176;XM_013505177 XP_013360629;XP_013360630;XP_013360631 MODEL 8928493 pseudo LOC102006560 histone-binding protein RBBP4 pseudogene NW_004955412 4399982 4403024 - 102006560 AGCD01012596 MODEL 8846110 pseudo LOC102028914 cytochrome P450 2A10-like NW_004955578 318847 325722 + 102028914 AGCD01075471 MODEL 8976495 protein-coding Rabggtb Rab geranylgeranyltransferase subunit beta ENCODES a protein that exhibits isoprenoid binding (ortholog); protein geranylgeranyltransferase activity (ortholog); Rab geranylgeranyltransferase activity (ortholog); INVOLVED IN protein geranylgeranylation (ortholog); FOUND IN cytosol (ortholog); Rab-protein geranylgeranyltransferase complex (ortholog) NW_004955423 17155161 17162237 - 102025134 AGCD01023846;AGCD01023847;GBCB01001195;XM_005385227 XP_005385284 MODEL 39133356 snorna SNORA50A small nucleolar RNA, H/ACA box 50A 8778706 pseudo LOC102024433 sodium/myo-inositol cotransporter-like NW_004955409 5273472 5274818 + 102024433 AGCD01009311 MODEL 8937159 ncrna LOC102021688 uncharacterized LOC102021688 NW_004955425 15981368 16020243 - 102021688 AGCD01025594;GBDF01249930;XR_001234295;XR_261147;XR_261148;XR_261149;XR_261150 MODEL 8819520 pseudo LOC102009561 transcription elongation regulator 1 pseudogene NW_004955402 134030 135953 + 102009561 AGCD01000008 MODEL 8953375 protein-coding Prpf40b pre-mRNA processing factor 40B FOUND IN nuclear body (ortholog) NW_004955547 232286 252922 + 102003384 AGCD01072140;AGCD01072141;GBDF01119507;XM_005411832;XM_005411833;XM_005411834;XM_005411836;XM_013508466 XP_005411889;XP_005411890;XP_005411891;XP_005411893;XP_013363920 MODEL 8814119 pseudo LOC102003712 N-alpha-acetyltransferase 50 pseudogene NW_004955402 792233 792986 - 102003712 AGCD01000033 MODEL 8725773 protein-coding Pus7 pseudouridine synthase 7 ENCODES a protein that exhibits enzyme binding (ortholog); pseudouridine synthase activity (ortholog); tRNA pseudouridine synthase activity (ortholog); INVOLVED IN mRNA pseudouridine synthesis (ortholog); negative regulation of translation (ortholog); regulation of hematopoietic stem cell differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual developmental disorder with abnormal behavior, microcephaly, and short stature (ortholog); FOUND IN nucleus (ortholog) NW_004955410 10062768 10119751 - 102022260 AGCD01010788;AGCD01010789;AGCD01010790;AGCD01010791;GBDJ01004561;XM_005377246;XM_013510649;XM_013510650 XP_005377303;XP_013366103;XP_013366104 MODEL 8904367 protein-coding Slc12a7 solute carrier family 12 member 7 ENCODES a protein that exhibits potassium:chloride symporter activity (ortholog); INVOLVED IN cell volume homeostasis (ortholog); cellular response to glucose stimulus (ortholog); potassium ion import across plasma membrane (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); urinary bladder cancer (ortholog); FOUND IN plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955504 529183 589728 - 102030334 AGCD01064822;AGCD01064823;GBBH01060650;XM_005407034;XM_005407035;XM_005407037;XM_013505890 XP_005407091;XP_005407092;XP_005407094;XP_013361344 MODEL 8876545 ncrna LOC102012707 uncharacterized LOC102012707 NW_004955584 1044910 1047589 + 102012707 AGCD01075977;GBBH01222868;XR_001232516 MODEL 8717665 protein-coding Wbp11 WW domain binding protein 11 ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); WW domain binding (ortholog); INVOLVED IN RNA splicing (ortholog); ASSOCIATED WITH genetic disease (ortholog); VERTEBRAL, CARDIAC, TRACHEOESOPHAGEAL, RENAL, AND LIMB DEFECTS (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955413 11533303 11549067 - 102028846 AGCD01013964;GBCQ01067517;XM_005379004;XM_005379005;XM_013511645 XP_005379061;XP_005379062;XP_013367099 MODEL 9035918 protein-coding Reps2 RALBP1 associated Eps domain containing 2 ASSOCIATED WITH Breast Neoplasms (ortholog); developmental and epileptic encephalopathy 1 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955519 1131027 1358313 - 102005076 AGCD01067882;AGCD01067883;AGCD01067884;AGCD01067885;AGCD01067886;AGCD01067887;AGCD01067888;AGCD01067889;GBCE01084254;GBDJ01193078;XM_005409136 XP_005409193 MODEL 8819122 pseudo LOC102025833 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L pseudogene NW_004955519 4496858 4498898 - 102025833 AGCD01067983 MODEL 8715189 protein-coding Pde6c phosphodiesterase 6C ENCODES a protein that exhibits 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); INVOLVED IN phototransduction, visible light (ortholog); response to light intensity (ortholog); retinal cone cell development (ortholog); PARTICIPATES IN visual phototransduction pathway; ASSOCIATED WITH achromatopsia (ortholog); Achromatopsia 1 (ortholog); Achromatopsia 5 (ortholog) NW_004955507 129678 179586 + 102029539 AGCD01065463;AGCD01065464;GBDF01128897;XM_005407518;XM_005407519 XP_005407575;XP_005407576 MODEL 8833731 protein-coding Patl1 PAT1 homolog 1, processing body mRNA decay factor ENCODES a protein that exhibits poly(G) binding (ortholog); poly(U) RNA binding (ortholog); RNA binding (ortholog); INVOLVED IN deadenylation-dependent decapping of nuclear-transcribed mRNA (ortholog); P-body assembly (ortholog); PARTICIPATES IN microRNA pathway; FOUND IN CCR4-NOT complex (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); nuclear speck (ortholog) NW_004955511 4090841 4119077 - 102010507 AGCD01066492;GBCB01023876;GBDK01137097;XM_013506460 XP_013361914 MODEL 8820351 ncrna LOC102008451 uncharacterized LOC102008451 NW_004955435 5691131 5736182 + 102008451 AGCD01032894;GBCQ01091899;XR_001234882 MODEL 8727318 protein-coding Ppy pancreatic polypeptide ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog) NW_004955451 17155681 17156829 - 102005767 AGCD01043724;XM_013519200 XP_013374654 MODEL 9053543 ncrna LOC102015683 uncharacterized LOC102015683 NW_004955403 3112831 3119376 - 102015683 AGCD01001752;GBDF01279437;XR_259144 MODEL 8836963 protein-coding LOC102019169 translation initiation factor IF-2-like NW_004955417 15890315 15897505 + 102019169 AGCD01018246;GBDF01147172;XM_013512712 XP_013368166 MODEL 8968943 protein-coding LOC102017606 olfactory receptor 11G2-like NW_004955550 856201 857148 + 102017606 AGCD01072527;XM_005412038 XP_005412095 MODEL 8997714 protein-coding Rtp1 receptor transporter protein 1 ENCODES a protein that exhibits olfactory receptor binding (ortholog); INVOLVED IN protein insertion into membrane (ortholog); FOUND IN cell surface (ortholog) NW_004955420 20622226 20625073 - 102026751 AGCD01021095;AGCD01021096;GBBH01073077;XM_005383256 XP_005383313 MODEL 8761417 protein-coding Trim26 tripartite motif containing 26 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); host-mediated suppression of symbiont invasion (ortholog); positive regulation of non-canonical NF-kappaB signal transduction (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955583 303081 325560 - 102013127 AGCD01075810;AGCD01075811;GBCB01073423;GBCE01135032;XM_013509781 XP_013365235 MODEL 8906288 ncrna LOC102006934 uncharacterized LOC102006934 NW_004955425 7579288 7588814 + 102006934 AGCD01025389;GBDF01234416;XR_261134 MODEL 8978865 pseudo LOC102024436 40S ribosomal protein S25 pseudogene NW_004955463 6739320 6740084 + 102024436 AGCD01049695 MODEL 8897607 ncrna LOC102027901 uncharacterized LOC102027901 NW_004955438 6321704 6325750 - 102027901 AGCD01035100;GBDF01126699;XR_261918 MODEL 8722338 protein-coding LOC102030359 protein WFDC9 NW_004955445 11651479 11652659 + 102030359 AGCD01039710;GBCQ01111229;XM_005392580 XP_005392637 MODEL 9032369 protein-coding LOC102010725 early placenta insulin-like peptide NW_004955434 9375953 9378354 - 102010725 AGCD01032299;GBDJ01223750;XM_005388747 XP_005388804 MODEL 8970101 protein-coding Serpinc1 serpin family C member 1 ENCODES a protein that exhibits heparin binding (ortholog); identical protein binding (ortholog); protease binding (ortholog); INVOLVED IN acute inflammatory response to antigenic stimulus (ortholog); lactation (ortholog); response to nutrient (ortholog); PARTICIPATES IN coagulation cascade pathway; enoxaparin pharmacodynamics pathway; fondaparinux pharmacodynamics pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Acute Experimental Pancreatitis (ortholog); acute kidney failure (ortholog); FOUND IN extracellular region (ortholog) NW_004955406 14024183 14036206 - 102008913 AGCD01005956;GBDK01194209;XM_005374876 XP_005374933 MODEL 8731931 protein-coding LOC102027212 olfactory receptor 5W2-like NW_004955511 760026 760958 - 102027212 AGCD01066342;XM_005407947 XP_005408004 MODEL 8842167 protein-coding Rassf8 Ras association domain family member 8 ASSOCIATED WITH cholangiocarcinoma (ortholog); lung small cell carcinoma (ortholog) NW_004955413 21029725 21052837 + 102004466 AGCD01014244;GBDI01260017;XM_005379106 XP_005379163 MODEL 9033587 protein-coding Rimbp2 RIMS binding protein 2 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); structural constituent of presynaptic active zone (ortholog); voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels (ortholog); INVOLVED IN regulation of calcium-dependent activation of synaptic vesicle fusion (ortholog); regulation of presynaptic membrane potential (ortholog); FOUND IN calyx of Held (ortholog); glutamatergic synapse (ortholog); presynaptic active zone cytoplasmic component (ortholog) NW_004955482 1326628 1431358 + 102003342 AGCD01057214;GBDF01277317;XM_013503718;XM_013503719;XM_013503720;XM_013503721;XM_013503722;XM_013503723;XM_013503724;XM_013503725;XM_013503726;XM_013503727;XM_013503728 XP_013359172;XP_013359173;XP_013359174;XP_013359175;XP_013359176;XP_013359177;XP_013359178;XP_013359179;XP_013359180;XP_013359181;XP_013359182 MODEL 10186633 ncrna LOC106149924 uncharacterized LOC106149924 NW_004955402 10356702 10388333 + 106149924 AGCD01000264;AGCD01000265;AGCD01000266;AGCD01000267;AGCD01000268;GBBH01124966;XR_001236409 MODEL 8711063 protein-coding Slc4a1ap solute carrier family 4 member 1 adaptor protein FOUND IN nucleoplasm (ortholog) NW_004955469 9617238 9654972 + 102007215 AGCD01052510;AGCD01052511;GBDF01089096;XM_005400510;XM_005400511 XP_005400567;XP_005400568 MODEL 8705104 ncrna LOC102011493 uncharacterized LOC102011493 NW_004955403 2475409 2479214 + 102011493 AGCD01001736;GBDF01280925;XR_001234362 MODEL 8942923 protein-coding LOC102006562 olfactory receptor 10J1-like NW_004955468 11188817 11189746 + 102006562 AGCD01052120;XM_013522346 XP_013377800 MODEL 8798048 protein-coding LOC102028916 P2Y purinoceptor 3-like NW_004955448 9564526 9566000 - 102028916 AGCD01041477;XM_005393109 XP_005393166 MODEL 8980145 protein-coding Lhx3 LIM homeobox 3 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); promoter-specific chromatin binding (ortholog); INVOLVED IN cell differentiation (ortholog); dorsal/ventral pattern formation (ortholog); gene expression (ortholog); ASSOCIATED WITH amenorrhea (ortholog); atrial fibrillation (ortholog); combined or isolated pituitary hormone deficiency 1 (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955513 4464149 4470962 + 102016736 AGCD01066927;AGCD01066928;XM_005408529 XP_005408586 MODEL 8843012 ncrna LOC102008453 uncharacterized LOC102008453 NW_004955436 8430136 8452234 + 102008453 AGCD01033741;AGCD01033742;GBDJ01154251;XR_261770 MODEL 8769505 protein-coding Snrpd3 small nuclear ribonucleoprotein D3 polypeptide ENCODES a protein that exhibits enzyme binding (ortholog); histone pre-mRNA DCP binding (ortholog); RNA binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); protein methylation (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955455 8021946 8045325 + 102004141 AGCD01045870;GBDF01081549;XM_005396392 XP_005396449 MODEL 8899846 protein-coding LOC102005475 E3 ubiquitin-protein ligase Topors-like NW_004955419 22119355 22127230 - 102005475 AGCD01020294;AGCD01020295;GBDF01224788;XM_005382789 XP_005382846 MODEL 8804927 protein-coding Themis thymocyte selection associated INVOLVED IN negative T cell selection (ortholog); positive T cell selection (ortholog); T cell receptor signaling pathway (ortholog); ASSOCIATED WITH celiac disease (ortholog); inflammatory bowel disease (ortholog); T-Lymphocytopenia (ortholog); FOUND IN cell-cell junction (ortholog); COP9 signalosome (ortholog); cytoplasm (ortholog) NW_004955436 8743835 8909040 - 102010627 AGCD01033751;AGCD01033752;GBDI01273776;XM_005389174;XM_005389175;XM_005389176;XM_005389177 XP_005389231;XP_005389232;XP_005389233;XP_005389234 MODEL 39131336 protein-coding TOPORS TOP1 binding arginine/serine rich protein 8965618 protein-coding LOC102023408 neutrophil gelatinase-associated lipocalin-like NW_004955570 382343 384967 - 102023408 AGCD01074723;GBDJ01109690;XM_013509381 XP_013364835 MODEL 8986597 protein-coding LOC102026220 transmembrane protein 132B NW_004955482 4337028 4550580 - 102026220 AGCD01057287;AGCD01057288;AGCD01057289;AGCD01057290;AGCD01057291;AGCD01057292;AGCD01057293;AGCD01057294;GBDF01116362;XM_013503744;XM_013503745;XM_013503746;XM_013503747 XP_013359198;XP_013359199;XP_013359200;XP_013359201 MODEL 39131368 protein-coding PRPF6 pre-mRNA processing factor 6 8901470 protein-coding LOC102012708 uncharacterized LOC102012708 NW_004955449 15463379 15557849 - 102012708 AGCD01042194;AGCD01042195;AGCD01042196;AGCD01042197;GBDK01148150;XM_005393396;XM_005393397;XR_001235813;XR_001235814;XR_262508;XR_262509 XP_005393453;XP_005393454 MODEL 8933731 protein-coding Slc12a8 solute carrier family 12 member 8 NW_004955427 24137420 24284485 - 102021263 AGCD01027502;AGCD01027503;AGCD01027504;AGCD01027505;AGCD01027506;AGCD01027507;GBBH01145884;XM_005386546 XP_005386603 MODEL 8840265 protein-coding Emc7 ER membrane protein complex subunit 7 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); FOUND IN EMC complex (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955416 459668 482562 + 102022189 AGCD01016802;AGCD01016803;AGCD01016804;GBDF01007726;XM_005381163 XP_005381220 MODEL 8972932 protein-coding Brix1 biogenesis of ribosomes BRX1 FOUND IN chromosome (ortholog); nucleolus (ortholog) NW_004955426 20042274 20051606 + 102005397 AGCD01026560;GBDF01054030;XM_005386187 XP_005386244 MODEL 8756208 protein-coding Sdhc succinate dehydrogenase complex subunit C ENCODES a protein that exhibits heme binding (ortholog); protein-membrane adaptor activity (ortholog); succinate dehydrogenase (quinone) activity (ortholog); INVOLVED IN tricarboxylic acid cycle (ortholog); PARTICIPATES IN citric acid cycle pathway; electron transport chain pathway; fumaric aciduria pathway; ASSOCIATED WITH breast cancer (ortholog); Carney Triad (ortholog); Carney-Stratakis syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955468 13050359 13083932 + 102009930 AGCD01052197;AGCD01052198;GBCQ01010596;XM_005400278 XP_005400335 MODEL 8927994 protein-coding Wbp1l WW domain binding protein 1 like ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN CXCL12-activated CXCR4 signaling pathway (ortholog); hemopoiesis (ortholog); positive regulation of protein ubiquitination (ortholog); ASSOCIATED WITH nevoid basal cell carcinoma syndrome (ortholog) NW_004955485 7655921 7710387 - 102011546 AGCD01058669;AGCD01058670;AGCD01058671;AGCD01058672;GBCE01054786;XM_005403823;XM_005403824;XM_013504076;XM_013504077 XP_005403880;XP_005403881;XP_013359530;XP_013359531 MODEL 8934066 pseudo LOC102010726 radixin pseudogene NW_004955435 6868094 6869629 - 102010726 AGCD01032938 MODEL 8719018 protein-coding LOC102030362 transmembrane protease serine 11B-like protein NW_004955447 4696572 4715733 + 102030362 AGCD01040730;XM_013518484;XM_013518485 XP_013373938;XP_013373939 MODEL 10275282 ncrna LOC106148180 uncharacterized LOC106148180 NW_004955417 22091880 22093634 + 106148180 AGCD01018409;GBDI01354304;XR_001233393 MODEL 8898756 protein-coding LOC102028564 olfactory receptor 5B2-like NW_004955511 3298169 3300146 - 102028564 AGCD01066456;GBDF01075822;XM_013506393 XP_013361847 MODEL 10301986 ncrna LOC106147085 uncharacterized LOC106147085 NW_004955517 1045333 1049530 + 106147085 AGCD01067588;GBCE01129533;XR_001231820 MODEL 8746931 ncrna LOC102009563 uncharacterized LOC102009563 NW_004955403 20142634 20146416 - 102009563 AGCD01002154;XR_259188 MODEL 8841957 protein-coding Rabif RAB interacting factor ENCODES a protein that exhibits zinc ion binding (ortholog) NW_004955406 38883050 38893012 - 102030497 AGCD01006612;GBDF01085052;XM_005375231 XP_005375288 MODEL 8732395 protein-coding Plcb1 phospholipase C beta 1 ENCODES a protein that exhibits calcium ion binding (ortholog); calmodulin binding (ortholog); enzyme binding (ortholog); INVOLVED IN activation of meiosis involved in egg activation (ortholog); cellular response to fluoride (ortholog); cellular response to glyceraldehyde (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); benign epilepsy with centrotemporal spikes (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); GABA-ergic synapse (ortholog) NW_004955415 18210608 18915099 + 102020797 AGCD01016445;AGCD01016446;AGCD01016447;AGCD01016448;AGCD01016449;AGCD01016450;AGCD01016451;AGCD01016452;AGCD01016453;AGCD01016454;AGCD01016455;AGCD01016456;AGCD01016457;AGCD01016458;AGCD01016459;AGCD01016460;GBCB01041065;GBDI01190271;XM_005380862 XP_005380919 MODEL 8749244 protein-coding LOC102018754 vomeronasal type-1 receptor 90-like NW_004955429 12434233 12435165 + 102018754 AGCD01028716;XM_005387250 XP_005387307 MODEL 8910170 protein-coding LOC102003715 prolactin-like NW_004955634 57648 64392 - 102003715 AGCD01077606;XM_005415042 XP_005415099 MODEL 9066505 protein-coding Trim27 tripartite motif containing 27 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol 3-kinase inhibitor activity (ortholog); SUMO transferase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); Arp2/3 complex-mediated actin nucleation (ortholog); innate immune response (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); mitochondrion (ortholog) NW_004955465 13891001 13902767 - 102008834 AGCD01050633;GBCE01076355;GBCE01076358;XM_013521856 XP_013377310 MODEL 8901444 ncrna LOC102010321 uncharacterized LOC102010321 NW_004955402 42833311 42840895 + 102010321 AGCD01001049;GBCB01051675;XR_259085 MODEL 8758761 ncrna LOC102005477 uncharacterized LOC102005477 NW_004955420 14717038 14721487 + 102005477 AGCD01020954;GBBH01152513;XR_260717 MODEL 8761889 protein-coding LOC102024439 prostate and testis expressed protein 3 NW_004955412 26865766 26870441 + 102024439 AGCD01013223;GBDF01193345;XM_005378472;XR_001232855;XR_001232856 XP_005378529 MODEL 9037750 protein-coding Snrpe small nuclear ribonucleoprotein polypeptide E ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); hepatocellular carcinoma (ortholog); hypogonadism (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); methylosome (ortholog) NW_004955406 39725841 39732527 + 102016018 AGCD01006633;GBDJ01075700;XM_005375279 XP_005375336 MODEL 8762053 protein-coding Rer1 retention in endoplasmic reticulum sorting receptor 1 ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); INVOLVED IN maintenance of protein localization in endoplasmic reticulum (ortholog); neuromuscular junction development (ortholog); positive regulation of protein localization to plasma membrane (ortholog); FOUND IN cell surface (ortholog); cis-Golgi network (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955486 8791457 8802691 - 102007903 AGCD01059156;GBDJ01075964;XM_005404170;XM_005404171 XP_005404227;XP_005404228 MODEL 8807667 protein-coding Pde6d phosphodiesterase 6D ENCODES a protein that exhibits GTPase inhibitor activity (ortholog); small GTPase binding (ortholog); ASSOCIATED WITH genetic disease (ortholog); Joubert syndrome 22 (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytoplasmic vesicle membrane (ortholog); cytosol (ortholog) NW_004955453 3992160 4024695 + 102019465 AGCD01044672;GBCQ01092966;XM_005395388 XP_005395445 MODEL 39132794 snorna SNORA50A small nucleolar RNA, H/ACA box 50A 8948205 protein-coding LOC102015684 ubiquitin carboxyl-terminal hydrolase 28-like NW_004955659 2405 15601 + 102015684 AGCD01077875;GBCB01026188;GBDJ01061026;XM_013510176 XP_013365630 MODEL 10328650 ncrna LOC106149925 uncharacterized LOC106149925 NW_004955457 13630497 13639479 + 106149925 AGCD01047049;XR_001236406;XR_001236407 MODEL 9012201 protein-coding Pqbp1 polyglutamine binding protein 1 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); GTPase binding (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); alternative mRNA splicing, via spliceosome (ortholog); cellular response to exogenous dsRNA (ortholog); ASSOCIATED WITH atrial heart septal defect (ortholog); autism spectrum disorder (ortholog); genetic disease (ortholog); FOUND IN centrosome (ortholog); ciliary base (ortholog); cytoplasm (ortholog) NW_004955543 430324 434205 + 102026569 AGCD01071585;GBDF01290192;XM_005411285;XM_005411286;XM_005411287 XP_005411342;XP_005411343;XP_005411344 MODEL 8800744 ncrna LOC102017608 uncharacterized LOC102017608 NW_004955442 14552373 14553007 + 102017608 AGCD01037826;XR_001235384 MODEL 8966838 ncrna LOC102019181 uncharacterized LOC102019181 NW_004955422 2137150 2166560 + 102019181 AGCD01022480;AGCD01022481;GBDK01327229;XR_001234010;XR_001234011;XR_001234012 MODEL 8750752 protein-coding Rtp2 receptor transporter protein 2 ENCODES a protein that exhibits olfactory receptor binding (ortholog); INVOLVED IN protein insertion into membrane (ortholog); FOUND IN cell surface (ortholog) NW_004955420 20043153 20047082 + 102024803 AGCD01021071;GBBH01107471;XM_005383249 XP_005383306 MODEL 8733726 protein-coding LOC102011496 RAD52 motif-containing protein 1-like NW_004957952 76 531 + 102011496 AGCD01081348;GBDJ01230466;GBDJ01230469;XM_005415236 XP_005415293 MODEL 8872076 protein-coding LOC102006937 olfactory receptor 5B3-like NW_004955511 3259255 3266476 - 102006937 AGCD01066452;XM_013506400 XP_013361854 MODEL 8948474 protein-coding LOC102028565 olfactory receptor 4P4-like NW_004955511 465198 466148 + 102028565 AGCD01066332;XM_005408192 XP_005408249 MODEL 8719673 protein-coding Slc4a2 solute carrier family 4 member 2 ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); enzyme binding (ortholog); INVOLVED IN amelogenesis (ortholog); chloride transport (ortholog); digestive tract development (ortholog); ASSOCIATED WITH Alkalosis (ortholog); Autosomal Recessive Osteopetrosis 9 (ortholog); autosomal recessive polycystic kidney disease (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); membrane (ortholog) NW_004955491 5498472 5513389 + 102030539 AGCD01060485;GBDJ01004266;XM_005404810;XM_005404811;XM_013504586 XP_005404867;XP_005404868;XP_013360040 MODEL 8842813 protein-coding LOC102027904 zinc finger protein 791-like NW_004955546 513986 532803 - 102027904 AGCD01071997;GBDI01353173;XM_013508421 XP_013363875 MODEL 8968450 protein-coding Psme3 proteasome activator subunit 3 ENCODES a protein that exhibits endopeptidase activator activity (ortholog); identical protein binding (ortholog); MDM2/MDM4 family protein binding (ortholog); INVOLVED IN negative regulation of extrinsic apoptotic signaling pathway (ortholog); regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); FOUND IN nucleoplasm (ortholog); proteasome complex (ortholog) NW_004955451 16631379 16637331 + 102023658 AGCD01043696;AGCD01043697;GBDF01008333;XM_005394477;XM_005394479 XP_005394534;XP_005394536 MODEL 8783987 pseudo LOC102025840 multifunctional protein ADE2 pseudogene NW_004955534 2738886 2740158 + 102025840 AGCD01070547 MODEL 9033791 protein-coding LOC102009564 regulator of nonsense transcripts 3A-like NW_004956152 404 2615 - 102009564 AGCD01079146;GBDJ01132460;XM_005415172 XP_005415229 MODEL 9040917 protein-coding Pus7l pseudouridine synthase 7 like ENCODES a protein that exhibits pseudouridine synthase activity (ortholog); INVOLVED IN mRNA pseudouridine synthesis (ortholog) NW_004955500 2992767 3010129 - 102006048 AGCD01063724;GBCE01022554;GBCE01034445;XM_005406586 XP_005406643 MODEL 8890165 pseudo LOC102026223 60S acidic ribosomal protein P2 pseudogene NW_004955491 1798170 1798517 + 102026223 AGCD01060361;XM_005404886 MODEL 8927000 pseudo LOC102021690 zinc finger protein 250-like NW_004955427 17506682 17508299 + 102021690 AGCD01027331 MODEL 8981060 protein-coding Smarca5 SNF2 related chromatin remodeling ATPase 5 ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); ATP-dependent chromatin remodeler activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to leukemia inhibitory factor (ortholog); chromatin organization (ortholog); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); Dwarfism (ortholog); genetic disease (ortholog); FOUND IN ACF complex (ortholog); B-WICH complex (ortholog); CERF complex (ortholog) NW_004955471 12206462 12240219 - 102018083 AGCD01053276;AGCD01053277;AGCD01053278;GBBH01063921;GBDK01133237;XM_013522910 XP_013378364 MODEL 8706749 protein-coding Prpf8 pre-mRNA processing factor 8 ENCODES a protein that exhibits K63-linked polyubiquitin modification-dependent protein binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to tumor necrosis factor (ortholog); mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; spliceosome pathway; ASSOCIATED WITH Choroideremia (ortholog); Developmental Disease (ortholog); fundus dystrophy (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955481 1499634 1530670 + 102017981 AGCD01056833;AGCD01056834;GBDF01002836;XM_005402612 XP_005402669 MODEL 9015898 protein-coding Serpind1 serpin family D member 1 ASSOCIATED WITH carotid artery thrombosis (ortholog); disease by infectious agent (ortholog); heparin cofactor II deficiency (ortholog) NW_004955442 19525411 19537986 - 102025297 AGCD01038066;AGCD01081646;GBDK01094174;XM_005391835 XP_005391892 MODEL 9046428 protein-coding Trim28 tripartite motif containing 28 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin-protein adaptor activity (ortholog); chromo shadow domain binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); convergent extension involved in axis elongation (ortholog); DNA damage response (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH atherosclerosis (ortholog); Colorectal Neoplasms (ortholog); nephroblastoma (ortholog); FOUND IN chromatin (ortholog); euchromatin (ortholog); heterochromatin (ortholog) NW_004955584 1148903 1156001 + 102030140 AGCD01075981;AGCD01075982;GBBH01031424;GBCB01020438;XM_013509851 XP_013365305 MODEL 8949343 protein-coding Rimkla ribosomal modification protein rimK like family member A ENCODES a protein that exhibits N-acetyl-L-aspartate-L-glutamate ligase activity (ortholog); FOUND IN cytoplasm (ortholog) NW_004955537 1992660 2024331 + 102009875 AGCD01070910;GBDI01027251;GBDI01027253;XM_005410597 XP_005410654 MODEL 9002044 protein-coding Ppard peroxisome proliferator activated receptor delta ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); fatty acid binding (ortholog); linoleic acid binding (ortholog); INVOLVED IN apoptotic process (ortholog); apoptotic signaling pathway (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH Acute-Phase Reaction (ortholog); alcohol-associated liver disease (ortholog); biliary tract cancer (ortholog); FOUND IN nucleus (ortholog) NW_004955437 3285281 3354099 + 102025837 AGCD01034305;AGCD01034306;AGCD01034307;AGCD01034308;AGCD01034309;GBBH01050550;GBDF01308373;XM_013516910 XP_013372364 MODEL 8822595 protein-coding LOC102011088 olfactory receptor 1361-like NW_004955408 1647226 1658966 + 102011088 AGCD01007970;XM_005376563 XP_005376620 MODEL 8822261 protein-coding Sdhd succinate dehydrogenase complex subunit D ENCODES a protein that exhibits heme binding (ortholog); protein-membrane adaptor activity (ortholog); succinate dehydrogenase (quinone) activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); regulation of catecholamine secretion (ortholog); tricarboxylic acid cycle (ortholog); PARTICIPATES IN altered citric acid cycle pathway; citric acid cycle pathway; electron transport chain pathway; ASSOCIATED WITH Carney-Stratakis syndrome (ortholog); combined oxidative phosphorylation deficiency 8 (ortholog); COVID-19 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955412 13768501 13778944 + 102027279 AGCD01012845;GBDF01125987;XM_005378109 XP_005378166 MODEL 8798068 protein-coding Pde6g phosphodiesterase 6G ENCODES a protein that exhibits spectrin binding (ortholog); INVOLVED IN positive regulation of epidermal growth factor receptor signaling pathway (ortholog); positive regulation of G protein-coupled receptor signaling pathway (ortholog); positive regulation of MAPK cascade (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; visual phototransduction pathway; ASSOCIATED WITH fundus dystrophy (ortholog); retinitis pigmentosa (ortholog); retinitis pigmentosa 57 (ortholog) NW_004955506 1437645 1441758 + 102030217 AGCD01065263;GBBH01223939;XM_005407267 XP_005407324 MODEL 8799637 pseudo LOC102028918 low molecular weight phosphotyrosine protein phosphatase pseudogene NW_004955449 263407 263882 + 102028918 AGCD01041762 MODEL 10143366 ncrna LOC106148181 uncharacterized LOC106148181 NW_004955417 30424536 30431519 + 106148181 AGCD01018620;XR_001233394 MODEL 8709800 pseudo LOC102008454 uncharacterized LOC102008454 NW_004955436 22240028 22281455 + 102008454 AGCD01034088;AGCD01034089 MODEL 8804766 protein-coding LOC102030363 cytochrome P450 2A10-like NW_004955578 445412 452021 - 102030363 AGCD01075481;GBCQ01021776;XM_005414009 XP_005414066 MODEL 10242450 ncrna LOC106149926 uncharacterized LOC106149926 NW_004955457 13617255 13630462 + 106149926 AGCD01047049;XR_001236408 MODEL 8929280 protein-coding LOC102010731 gap junction epsilon-1 protein NW_004955436 18085611 18087433 - 102010731 AGCD01033955;XM_005389256 XP_005389313 MODEL 8852745 protein-coding Tor1a torsin family 1 member A ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent protein folding chaperone (ortholog); cytoskeletal protein binding (ortholog); INVOLVED IN cell adhesion (ortholog); ERAD pathway (ortholog); intermediate filament cytoskeleton organization (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita-5 (ortholog); autosomal dominant intellectual developmental disorder 43 (ortholog); Contracture (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog) NW_004955513 30655 36299 - 102012790 AGCD01066810;GBDF01083639;XM_005408331 XP_005408388 MODEL 8730291 protein-coding LOC102017609 RIMS-binding protein 3A-like NW_004955442 17581675 17586967 + 102017609 AGCD01037968;GBDF01001981;XM_005391709 XP_005391766 MODEL 8714119 pseudo LOC102012709 40S ribosomal protein S29 pseudogene NW_004955587 108587 108779 - 102012709 AGCD01076058 MODEL 39133359 snrna U4 U4 spliceosomal RNA 8705735 protein-coding Rassf9 Ras association domain family member 9 ENCODES a protein that exhibits enzyme binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN intracellular transport (ortholog); FOUND IN cytosol (ortholog); endosome (ortholog); recycling endosome (ortholog) NW_004955405 23677319 23711542 - 102006866 AGCD01005133;AGCD01005134;GBDI01327913;XM_005374413 XP_005374470 MODEL 8773900 pseudo LOC102006568 prefoldin subunit 1 pseudogene NW_004955472 1989943 1990819 - 102006568 AGCD01053427 MODEL 8716381 protein-coding Emc8 ER membrane protein complex subunit 8 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); FOUND IN cytoplasm (ortholog); EMC complex (ortholog); endoplasmic reticulum (ortholog) NW_004955541 873354 884247 - 102020052 AGCD01071363;GBDI01066673;GBDJ01075485;XM_005410981;XM_013507992 XP_005411038;XP_013363446 MODEL 39131528 protein-coding LHX4 LIM homeobox 4 8879528 protein-coding Themis2 thymocyte selection associated family member 2 INVOLVED IN regulation of B cell activation (ortholog); T cell receptor signaling pathway (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955452 7058703 7075114 + 102010662 AGCD01044131;GBDK01197221;XM_005394933;XM_013519612;XM_013519613;XM_013519614 XP_005394990;XP_013375066;XP_013375067;XP_013375068 MODEL 9031206 ncrna LOC102011091 uncharacterized LOC102011091 NW_004955409 10810505 10829604 + 102011091 AGCD01009485;GBDI01024783;XR_259768 MODEL 8954657 protein-coding Pradc1 protease associated domain containing 1 FOUND IN extracellular region (ortholog) NW_004955424 12403090 12408055 + 102017791 AGCD01024604;GBDF01155799;XM_005385569 XP_005385626 MODEL 9015115 pseudo LOC102006938 protein kinase C iota type pseudogene NW_004955430 13260783 13262484 + 102006938 AGCD01029529 MODEL 9053332 protein-coding Pde6h phosphodiesterase 6H INVOLVED IN positive regulation of epidermal growth factor receptor signaling pathway (ortholog); positive regulation of G protein-coupled receptor signaling pathway (ortholog); positive regulation of MAPK cascade (ortholog); PARTICIPATES IN visual phototransduction pathway; ASSOCIATED WITH achromatopsia 6 (ortholog); color blindness (ortholog); cone-rod dystrophy 14 (ortholog) NW_004955413 11654252 11711799 + 102004369 AGCD01013966;GBDJ01103597;XM_005379015;XM_013511586;XM_013511587;XM_013511588 XP_005379072;XP_013367040;XP_013367041;XP_013367042 MODEL 9026314 protein-coding LOC102027213 uncharacterized LOC102027213 NW_004955429 21619144 21633759 - 102027213 AGCD01029007;GBDK01228368;XM_005387268 XP_005387325 MODEL 8997857 protein-coding LOC102030365 butyrophilin subfamily 1 member A1-like NW_004955581 1299456 1302135 + 102030365 AGCD01075729;GBBH01080061;XM_013509766;XM_013509767 XP_013365220;XP_013365221 MODEL 8824439 protein-coding LOC102027906 ribonuclease pancreatic-like NW_004955550 1671836 1672595 + 102027906 AGCD01072583;GBDF01075569;XM_013508548 XP_013364002 MODEL 8932661 protein-coding LOC102005483 olfactory receptor 4B1-like NW_004955422 365286 366218 - 102005483 AGCD01022404;XM_005384937 XP_005384994 MODEL 8718145 pseudo LOC102025841 60S ribosomal protein L26-like 1 pseudogene NW_004955437 18774210 18776027 + 102025841 AGCD01034814 MODEL 8716137 protein-coding LOC102009565 phosphoinositide-3-kinase-interacting protein 1-like NW_004957624 10 1097 - 102009565 AGCD01081020;GBDJ01181150;GBDK01091793;XM_005415233 XP_005415290 MODEL 8765697 protein-coding LOC102010322 cytochrome P450 1A2 ENCODES a protein that exhibits caffeine oxidase activity (ortholog); demethylase activity (ortholog); enzyme binding (ortholog); INVOLVED IN alkaloid metabolic process (ortholog); cellular respiration (ortholog); cellular response to cadmium ion (ortholog); PARTICIPATES IN axitinib pharmacokinetics pathway; caffeine pharmacokinetics pathway; clomipramine pharmacokinetics pathway; ASSOCIATED WITH acute kidney failure (ortholog); acute lymphoblastic leukemia (ortholog); Atrophy (ortholog) NW_004955450 3165107 3171894 - 102010322 AGCD01042426;GBBH01140851;XM_005393544;XM_005393545 XP_005393601;XP_005393602 MODEL 8729523 protein-coding Slc12a9 solute carrier family 12 member 9 FOUND IN lysosomal membrane (ortholog) NW_004955573 107337 125875 - 102011819 AGCD01074962;AGCD01074963;GBBH01142219;GBDJ01136651;XM_005413684;XM_013509455;XM_013509456;XM_013509457;XM_013509458;XM_013509459 XP_005413741;XP_013364909;XP_013364910;XP_013364911;XP_013364912;XP_013364913 MODEL 9059646 protein-coding Pusl1 pseudouridine synthase like 1 ENCODES a protein that exhibits tRNA pseudouridine(38-40) synthase activity (ortholog); INVOLVED IN tRNA pseudouridine synthesis (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955486 9491613 9494746 - 102025803 AGCD01059188;GBCB01051116;XM_005404237;XM_013504191;XM_013504193;XM_013504194 XP_005404294;XP_013359645;XP_013359647;XP_013359648 MODEL 8935000 protein-coding Rere arginine-glutamic acid dipeptide repeats ENCODES a protein that exhibits transcription coactivator activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN branching morphogenesis of a nerve (ortholog); cerebellar granule cell precursor proliferation (ortholog); cerebellar Purkinje cell layer maturation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Cerebral Visual Impairment and Intellectual Disability (ortholog); cleft palate (ortholog); FOUND IN histone deacetylase complex (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955486 4303573 4695800 + 102026871 AGCD01059057;AGCD01059058;AGCD01059059;AGCD01059060;AGCD01059061;AGCD01059062;AGCD01059063;GBBH01091311;GBDF01085949;XM_013504212 XP_013359666 MODEL 9043099 protein-coding Wbp2 WW domain binding protein 2 ENCODES a protein that exhibits chromatin DNA binding (ortholog); nuclear estrogen receptor binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to estrogen stimulus (ortholog); establishment of protein localization to chromatin (ortholog); positive regulation of intracellular estrogen receptor signaling pathway (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 107 (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955506 6398411 6406970 + 102011685 AGCD01065420;GBDF01010035;XM_005407477;XM_013506054 XP_005407534;XP_013361508 MODEL 10127659 pseudo LOC106147086 zinc finger protein 583-like NW_004955517 510840 513782 + 106147086 AGCD01067578 MODEL 8771779 pseudo LOC102010323 40S ribosomal protein S20 pseudogene NW_004955596 302819 303144 - 102010323 AGCD01076514 MODEL 8822826 protein-coding LOC102021691 estradiol 17 beta-dehydrogenase 5-like NW_004955429 578697 593487 + 102021691 AGCD01028368;AGCD01028369;GBDF01052126;XM_005386850;XM_005386852 XP_005386907;XP_005386909 MODEL 8782217 protein-coding Prph peripherin ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN intermediate filament cytoskeleton organization (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); FOUND IN terminal bouton; axon (ortholog); C-fiber (ortholog) NW_004955500 8106371 8117221 + 102016172 AGCD01063978;AGCD01063979;AGCD01063980;GBCE01007281;XM_005406695 XP_005406752 MODEL 8961488 ncrna LOC102018759 uncharacterized LOC102018759 NW_004955434 343225 349646 + 102018759 AGCD01032022;AGCD01032023;AGCD01032024;GBDK01384477;XR_261606 MODEL 8967025 ncrna LOC102023409 uncharacterized LOC102023409 NW_004955446 13005196 13038416 - 102023409 AGCD01040245;GBDF01200490;XR_001235643;XR_262396;XR_262397 MODEL 8808283 protein-coding Plcb2 phospholipase C beta 2 ENCODES a protein that exhibits C-type glycerophospholipase activity (ortholog); G-protein beta/gamma-subunit complex binding (ortholog); phosphatidylinositol phospholipase C activity (ortholog); INVOLVED IN cell chemotaxis (ortholog); detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); phosphatidylinositol metabolic process (ortholog); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; G protein mediated signaling pathway via Galphaq family; ASSOCIATED WITH Moebius syndrome (ortholog); thrombocytopenia (ortholog); FOUND IN cytoplasm (ortholog); G-protein beta/gamma-subunit complex (ortholog); neuronal dense core vesicle (ortholog) NW_004955416 7221326 7240743 - 102017866 AGCD01016970;GBDJ01275265;XM_005381228;XM_005381229;XM_005381230;XM_013512599;XM_013512600 XP_005381285;XP_005381286;XP_005381287;XP_013368053;XP_013368054 MODEL 8781231 ncrna LOC102008455 uncharacterized LOC102008455 NW_004955437 7726888 7728942 - 102008455 AGCD01034465;GBDF01111441;XR_261864;XR_261865 MODEL 8710174 pseudo LOC102024440 elongation factor 1-alpha 1 pseudogene NW_004955466 13847858 13849554 + 102024440 AGCD01051188;XR_263320 MODEL 10139313 protein-coding LOC106148182 translation initiation factor IF-2-like NW_004955417 8715819 8740364 + 106148182 AGCD01018032;AGCD01018033;GBDJ01399476;XM_013512699 XP_013368153 MODEL 8723060 protein-coding Rtp3 receptor transporter protein 3 INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); protein targeting to membrane (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); hepatocellular carcinoma (ortholog); Liver Neoplasms (ortholog); FOUND IN cytoplasm (ortholog) NW_004955420 25545752 25550044 - 102025364 AGCD01021365;GBDK01129519;XM_005383440;XM_005383441;XM_005383442;XM_013513589;XM_013513590 XP_005383497;XP_005383498;XP_005383499;XP_013369043;XP_013369044 MODEL 9066467 protein-coding Rerg RAS like estrogen regulated growth inhibitor ENCODES a protein that exhibits GTPase activity (ortholog); INVOLVED IN negative regulation of cell growth (ortholog); negative regulation of cell population proliferation (ortholog); response to hormone (ortholog); ASSOCIATED WITH breast cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955413 11825235 11940390 - 102004687 AGCD01013973;AGCD01013974;AGCD01013975;AGCD01013976;GBCQ01095141;XM_005379016;XM_013511678 XP_005379073;XP_013367132 MODEL 8799605 protein-coding Slc4a3 solute carrier family 4 member 3 ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); enzyme binding (ortholog); INVOLVED IN bicarbonate transport (ortholog); cardiac conduction (ortholog); pH reduction (ortholog); ASSOCIATED WITH Cardiac Arrhythmias (ortholog); genetic disease (ortholog); heart disease (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955453 13846444 13859707 - 102028157 AGCD01044854;GBCE01154397;XM_005395505;XM_005395506;XM_005395507;XM_013519939;XM_013519940 XP_005395562;XP_005395563;XP_005395564;XP_013375393;XP_013375394 MODEL 8962572 protein-coding Snrpf small nuclear ribonucleoprotein polypeptide F ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); RNA splicing (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); nasopharynx carcinoma (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); methylosome (ortholog) NW_004955405 32236876 32242716 + 102007186 AGCD01005331;GBDJ01079208;XM_005374489 XP_005374546 MODEL 8834448 protein-coding Praf2 PRA1 domain family member 2 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955543 594662 597695 - 102007939 AGCD01071593;GBDF01249477;XM_005411321 XP_005411378 MODEL 626189214 snorna SNORA50B small nucleolar RNA, H/ACA box 50B 9033941 ncrna LOC102015687 uncharacterized LOC102015687 NW_004955405 39366026 39376002 - 102015687 AGCD01005499;GBDI01373801;XR_259446 MODEL 8720197 protein-coding Psme3ip1 proteasome activator subunit 3 interacting protein 1 INVOLVED IN negative regulation of proteasomal protein catabolic process (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); spliceosomal complex (ortholog) NW_004955433 14813688 14843446 - 102023627 AGCD01031729;AGCD01031730;GBCB01023782;XM_005388378;XM_005388379;XM_005388380;XM_005388381;XM_005388383;XM_013516131 XP_005388435;XP_005388436;XP_005388437;XP_005388438;XP_005388440;XP_013371585 MODEL 8914486 protein-coding Serpine1 serpin family E member 1 ENCODES a protein that exhibits endopeptidase inhibitor activity (ortholog); protease binding (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to aldosterone (ortholog); cellular response to angiotensin (ortholog); PARTICIPATES IN fibrinolysis pathway; hypoxia inducible factor pathway; oxygen homeostasis pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acquired Protein C Deficiency (ortholog); Acute Lung Injury (ortholog); FOUND IN chromaffin granule (ortholog); extracellular exosome (ortholog); extracellular matrix (ortholog) NW_004955456 16147523 16157040 - 102027492 AGCD01046692;GBBH01203227;XM_005396870 XP_005396927 MODEL 8925818 protein-coding Smarcal1 SNF2 related chromatin remodeling annealing helicase 1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent activity, acting on DNA (ortholog); ATP-dependent DNA/DNA annealing activity (ortholog); INVOLVED IN DNA damage response (ortholog); double-strand break repair via nonhomologous end joining (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH atrioventricular septal defect (ortholog); atypical hemolytic-uremic syndrome (ortholog); Dwarfism (ortholog); FOUND IN DNA replication factor A complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955453 16724286 16784129 - 102023325 AGCD01044911;AGCD01044912;GBDF01006346;XM_005395685;XM_005395686 XP_005395742;XP_005395743 MODEL 8917849 protein-coding LOC102027215 olfactory receptor 4P4-like NW_004955511 376807 378678 + 102027215 AGCD01066330;XM_005408188 XP_005408245 MODEL 8882147 pseudo LOC102019186 zinc finger protein 280D pseudogene NW_004955501 4636880 4667130 + 102019186 AGCD01064133;AGCD01064134;AGCD01064135;AGCD01064136 MODEL 8737394 protein-coding Patl2 PAT1 homolog 2 INVOLVED IN negative regulation of cytoplasmic mRNA processing body assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); Oocyte Maturation Defect 2 (ortholog); Oocyte Maturation Defect 4 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); P-body (ortholog) NW_004955416 11169711 11180557 - 102017566 AGCD01017178;GBDK01026686;XM_013512470;XM_013512471;XM_013512472 XP_013367924;XP_013367925;XP_013367926 MODEL 9031796 pseudo LOC102011501 60S ribosomal protein L9 pseudogene NW_004955406 3129354 3129909 + 102011501 AGCD01005665 MODEL 8798355 protein-coding Trim29 tripartite motif containing 29 ENCODES a protein that exhibits identical protein binding (ortholog); p53 binding (ortholog); INVOLVED IN negative regulation of protein localization to nucleus (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH high grade glioma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lysosome (ortholog) NW_004955412 21134076 21158982 - 102010139 AGCD01013018;GBCE01037365;XM_005378344;XM_013511251 XP_005378401;XP_013366705 MODEL 8993754 protein-coding Rimklb ribosomal modification protein rimK like family member B ENCODES a protein that exhibits citrate-L-glutamate ligase activity (ortholog); N-acetyl-L-aspartate-L-glutamate ligase activity (ortholog); FOUND IN cytoplasm (ortholog) NW_004955413 6298833 6362812 - 102024326 AGCD01013724;AGCD01013725;AGCD01013726;AGCD01013727;AGCD01013728;AGCD01013729;AGCD01013730;GBDI01255536;XM_013511616;XM_013511617;XR_001233028;XR_001233029;XR_001233030 XP_013367070;XP_013367071 MODEL 8832749 pseudo LOC102028921 nucleobindin-2-like NW_004955450 3336243 3338400 + 102028921 AGCD01042429 MODEL 8906200 protein-coding Raver1 ribonucleoprotein, PTB binding 1 ASSOCIATED WITH genetic disease (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955495 1594864 1609251 - 102003563 AGCD01061704;AGCD01061705;GBCE01008151;XM_005405591;XM_013505162;XM_013505163;XM_013505164;XM_013505165 XP_005405648;XP_013360616;XP_013360617;XP_013360618;XP_013360619 MODEL 9043737 protein-coding Sdk1 sidekick cell adhesion molecule 1 INVOLVED IN behavioral response to cocaine (ortholog); regulation of dendritic spine development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); megacolon (ortholog); prostate cancer (ortholog) NW_004955460 11278136 12148619 - 102009470 AGCD01048631;AGCD01048632;AGCD01048633;AGCD01048634;AGCD01048635;AGCD01048636;AGCD01048637;AGCD01048638;AGCD01048639;AGCD01048640;AGCD01048641;AGCD01048642;AGCD01048643;AGCD01048644;AGCD01048645;AGCD01048646;AGCD01048647;AGCD01048648;AGCD01048649;GBCE01150993;GBDJ01351857;XM_005397857 XP_005397914 MODEL 9018143 protein-coding Thg1l tRNA-histidine guanylyltransferase 1 like ENCODES a protein that exhibits ATP binding (ortholog); GTP binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN mitochondrial fusion (ortholog); protein homotetramerization (ortholog); response to oxidative stress (ortholog); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 28 (ortholog); Fibrosis (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog); transferase complex (ortholog) NW_004955408 11857380 11863786 + 102017541 AGCD01008319;GBDI01276272;XM_013508818;XM_013508819 XP_013364272;XP_013364273 MODEL 8953675 pseudo LOC102011094 ubiquitin-conjugating enzyme E2 D3-like NW_004955409 26283548 26284242 - 102011094 AGCD01010170 MODEL 8891788 protein-coding Prph2 peripherin 2 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN detection of light stimulus involved in visual perception (ortholog); photoreceptor cell outer segment organization (ortholog); protein heterooligomerization (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; ASSOCIATED WITH bestrophinopathy (ortholog); bone marrow disease (ortholog); Central Areolar Choroidal Dystrophy 2 (ortholog); FOUND IN photoreceptor outer segment (ortholog) NW_004955437 8784211 8794789 - 102023632 AGCD01034497;AGCD01034498;GBBH01103789;XM_005389723 XP_005389780 MODEL 8848377 protein-coding LOC102017611 natural cytotoxicity triggering receptor 1-like NW_004955567 1860919 1864038 - 102017611 AGCD01074494;AGCD01074495;GBDI01309508;GBDK01092488;XM_005413395 XP_005413452 MODEL 8755781 pseudo LOC102023410 cofilin-2 pseudogene NW_004955573 449805 451517 - 102023410 AGCD01074979 MODEL 8933402 protein-coding Rtp4 receptor transporter protein 4 INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); protein targeting to membrane (ortholog); ASSOCIATED WITH Human Influenza (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955420 20435924 20459440 - 102028423 AGCD01021092;XM_013513337 XP_013368791 MODEL 8761007 pseudo LOC102027907 cofilin-2 pseudogene NW_004955552 2295510 2296040 + 102027907 AGCD01072808 MODEL 8758438 protein-coding Pde7a phosphodiesterase 7A ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); cyclic-nucleotide phosphodiesterase activity (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; FOUND IN cytoplasm (ortholog) NW_004955444 13349405 13475827 + 102019859 AGCD01039100;AGCD01039101;GBCE01012964;GBCE01012970;XM_005392162;XR_262266;XR_262267 XP_005392219 MODEL 8897014 pseudo LOC102003718 N-alpha-acetyltransferase 50 pseudogene NW_004955988 4743 5256 + 102003718 AGCD01078815 MODEL 8731415 protein-coding Slc13a1 solute carrier family 13 member 1 ENCODES a protein that exhibits monoatomic anion:sodium symporter activity (ortholog); secondary active sulfate transmembrane transporter activity (ortholog); sodium:sulfate symporter activity (ortholog); INVOLVED IN sodium ion transport (ortholog); sulfate transmembrane transport (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955479 4697374 4775836 - 102012094 AGCD01056330;AGCD01056331;GBCQ01006342;XM_005402324 XP_005402381 MODEL 8779373 protein-coding Pparg peroxisome proliferator activated receptor gamma ENCODES a protein that exhibits alpha-actinin binding (ortholog); arachidonate binding (ortholog); chromatin binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); beige fat cell differentiation (ortholog); BMP signaling pathway (ortholog); PARTICIPATES IN DNA modification pathway; Wnt signaling, non-canonical pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); acute kidney failure (ortholog); Acute Lung Injury (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955429 14814690 14936869 + 102018008 AGCD01028785;AGCD01028786;AGCD01028787;GBCQ01128594;XM_005387017;XM_005387018;XM_005387019 XP_005387074;XP_005387075;XP_005387076 MODEL 10251931 ncrna LOC106149927 uncharacterized LOC106149927 NW_004955406 12958083 12984947 - 106149927 AGCD01005929;AGCD01005930;GBDF01144794;XR_001236410 MODEL 8926213 protein-coding Lhx4 LIM homeobox 4 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); methyl-CpG binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); medial motor column neuron differentiation (ortholog); motor neuron axon guidance (ortholog); ASSOCIATED WITH combined or isolated pituitary hormone deficiency 1 (ortholog); combined pituitary hormone deficiency 4 (ortholog); combined pituitary hormone deficiency 6 (ortholog) NW_004955406 19457658 19470875 + 102010972 AGCD01006082;GBDF01262146;XM_013503151 XP_013358605 MODEL 8702038 protein-coding LOC102028566 vesicle-associated membrane protein 714-like NW_004955433 6388632 6443700 + 102028566 AGCD01031533;AGCD01031534;AGCD01031535;AGCD01031536;AGCD01031537;AGCD01031538;GBDF01162678;XM_005388224;XM_005388225;XM_005388226;XM_005388227;XM_005388228 XP_005388281;XP_005388282;XP_005388283;XP_005388284;XP_005388285 MODEL 10135390 protein-coding Brk1 BRICK1 subunit of SCAR/WAVE actin nucleating complex ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); small GTPase binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cell motility (ortholog); in utero embryonic development (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; FOUND IN lamellipodium (ortholog); SCAR complex (ortholog) NW_004955561 1545921 1554423 + 106147451 AGCD01073856;GBDF01010733;XM_013509100 XP_013364554 MODEL 8971700 pseudo LOC102011503 10 kDa heat shock protein, mitochondrial pseudogene NW_004955406 38802378 38802693 + 102011503 AGCD01006609 MODEL 9004575 ncrna LOC102010733 uncharacterized LOC102010733 NW_004955437 20621891 20626279 + 102010733 AGCD01034877;GBCB01027078;XR_261898 MODEL 9056150 protein-coding Tor1aip1 torsin 1A interacting protein 1 ENCODES a protein that exhibits ATPase activator activity (ortholog); ATPase binding (ortholog); cytoskeletal protein binding (ortholog); INVOLVED IN nuclear membrane organization (ortholog); positive regulation of ATP-dependent activity (ortholog); protein localization to nuclear envelope (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2Y (ortholog); centronuclear myopathy (ortholog); genetic disease (ortholog); FOUND IN nuclear envelope (ortholog); nuclear inner membrane (ortholog); nuclear membrane (ortholog) NW_004955406 19122906 19152458 + 102005890 AGCD01006074;AGCD01006075;GBDF01085103;XM_005374964;XM_005374965;XM_013521233;XM_013521240;XM_013521241;XM_013521247;XM_013521257 XP_005375021;XP_005375022;XP_013376687;XP_013376694;XP_013376695;XP_013376701;XP_013376711 MODEL 8932772 pseudo LOC102012710 GTP:AMP phosphotransferase AK3, mitochondrial pseudogene NW_004955402 34583997 34587079 + 102012710 AGCD01000866 MODEL 8910867 ncrna LOC102024442 uncharacterized LOC102024442 NW_004955413 29320976 29322513 + 102024442 AGCD01014580;GBDF01002331;XR_260124 MODEL 8870051 pseudo LOC102025849 zinc finger protein 83-like NW_004955558 7510 10389 + 102025849 AGCD01073338 MODEL 9048329 protein-coding LOC102030366 aurora kinase C-like NW_004955449 17754443 17755004 + 102030366 AGCD01042262;XM_013518694 XP_013374148 MODEL 39133360 snrna U4 U4 spliceosomal RNA 8968791 protein-coding Emc9 ER membrane protein complex subunit 9 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into ER membrane by stop-transfer membrane-anchor sequence (ortholog); tail-anchored membrane protein insertion into ER membrane (ortholog); FOUND IN cytoplasm (ortholog); EMC complex (ortholog) NW_004955409 36257904 36262120 + 102009357 AGCD01010454;GBDK01277777;XM_005377037 XP_005377094 MODEL 8836856 protein-coding Rergl RERG like ASSOCIATED WITH prostate cancer (ortholog) NW_004955413 14324734 14334992 - 102010353 AGCD01014040;GBDJ01387403;XM_005379035;XM_005379036 XP_005379092;XP_005379093 MODEL 8984576 protein-coding LOC102009569 protocadherin-8 NW_004955404 50763263 50767330 + 102009569 AGCD01004536;AGCD01004537;GBDF01044218;XM_005374213;XM_013516742 XP_005374270;XP_013372196 MODEL 8812140 protein-coding Plcb3 phospholipase C beta 3 ENCODES a protein that exhibits calmodulin binding (ortholog); G-protein beta-subunit binding (ortholog); G-protein gamma-subunit binding (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); inositol trisphosphate metabolic process (ortholog); phosphatidylinositol catabolic process (ortholog); PARTICIPATES IN endothelin signaling pathway; G protein mediated signaling pathway via Galphaq family; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH chronic ulcer of skin (ortholog); Experimental Diabetes Mellitus (ortholog); Huntington's disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of membrane (ortholog); cytosol (ortholog) NW_004955422 20810871 20827267 - 102017247 AGCD01023089;AGCD01023090;GBDF01280248;GBDK01071508;XM_005384625 XP_005384682 MODEL 8836432 protein-coding Pvalb parvalbumin ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cochlea development (ortholog); excitatory chemical synaptic transmission (ortholog); gene expression (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH bipolar disorder (ortholog); oxyphilic adenoma (ortholog); psychotic disorder (ortholog); FOUND IN axon (ortholog); cuticular plate (ortholog); cytoplasm (ortholog) NW_004955413 23329467 23345487 - 102022484 AGCD01014329;GBCB01002123;XM_005379169 XP_005379226 MODEL 8938336 protein-coding LOC102019190 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like NW_004955510 397595 407996 - 102019190 AGCD01066147;AGCD01066148;XM_013506307 XP_013361761 MODEL 8929325 protein-coding Smarcb1 SWI/SNF related BAF chromatin remodeling complex subunit B1 ENCODES a protein that exhibits ATP-dependent chromatin remodeler activity (ortholog); DNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN blastocyst development (ortholog); blastocyst hatching (ortholog); cell differentiation (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH atypical teratoid rhabdoid tumor (ortholog); autism spectrum disorder (ortholog); clear cell renal cell carcinoma (ortholog); FOUND IN chromatin (ortholog); fibrillar center (ortholog); nBAF complex (ortholog) NW_004955455 8420263 8457105 - 102011401 AGCD01045891;AGCD01045892;AGCD01045893;AGCD01045894;GBDF01124014;XM_005396418;XM_005396419;XM_013520440 XP_005396475;XP_005396476;XP_013375894 MODEL 8723354 ncrna LOC102010324 uncharacterized LOC102010324 NW_004955403 1876109 1880828 - 102010324 AGCD01001726;GBCQ01179100;XR_259132 MODEL 9061906 protein-coding LOC102026225 syntaxin-4 NW_004955493 7878742 7885454 + 102026225 AGCD01061234;GBDK01358325;XM_005405291 XP_005405348 MODEL 8950643 pseudo LOC102008467 E3 ubiquitin-protein ligase HECTD3 pseudogene NW_004955442 14068251 14074752 - 102008467 AGCD01037801 MODEL 9040604 protein-coding Trim3 tripartite motif containing 3 ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN neural precursor cell proliferation (ortholog); positive regulation of toll-like receptor 3 signaling pathway (ortholog); protein K63-linked ubiquitination (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); glutamatergic synapse (ortholog) NW_004955414 22181999 22207244 - 102021962 AGCD01015448;GBCE01154433;XM_005380144;XM_005380145;XM_005380146 XP_005380201;XP_005380202;XP_005380203 MODEL 8998724 protein-coding Raver2 ribonucleoprotein, PTB binding 2 FOUND IN nucleus (ortholog) NW_004955423 25583650 25626925 - 102007246 AGCD01024081;AGCD01024082;GBBH01084470;XM_005385370 XP_005385427 MODEL 8927989 protein-coding LOC102011504 keratin-associated protein 8-1 NW_004955407 30527468 30528014 - 102011504 AGCD01007636;XM_005375654 XP_005375711 MODEL 9010377 ncrna LOC102011095 uncharacterized LOC102011095 NW_004955463 784664 786273 + 102011095 AGCD01049497;GBDF01014364;XR_263139 MODEL 8999377 protein-coding Snrpg small nuclear ribonucleoprotein polypeptide G ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); nasopharynx carcinoma (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); methylosome (ortholog) NW_004955424 14844318 14851720 + 102006149 AGCD01024660;GBCE01100469;XM_005385616 XP_005385673 MODEL 626189193 snorna SNORA50C small nucleolar RNA, H/ACA box 50C 8803140 protein-coding Slc4a4 solute carrier family 4 member 4 ENCODES a protein that exhibits identical protein binding (ortholog); sodium:bicarbonate symporter activity (ortholog); symporter activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); metanephric proximal tubule development (ortholog); positive regulation of glycolytic process (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); autosomal recessive proximal renal tubular acidosis (ortholog); cataract (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); membrane (ortholog) NW_004955447 1599986 1900791 - 102021061 AGCD01040522;AGCD01040523;GBCQ01094065;XM_005392771;XM_005392772;XM_005392773;XM_013518567 XP_005392828;XP_005392829;XP_005392830;XP_013374021 MODEL 8949870 protein-coding Rtp5 receptor transporter protein 5 (putative) NW_004955542 40344 43885 - 102029120 AGCD01071456;XM_005411103 XP_005411160 MODEL 8905429 protein-coding Wbp2nl WBP2 N-terminal like INVOLVED IN regulation of cytosolic calcium ion concentration (ortholog); FOUND IN sperm flagellum (ortholog); sperm head (ortholog) NW_004955413 27402614 27442106 + 102030406 AGCD01014504;AGCD01014505;AGCD01014506;AGCD01014507;GBDF01123498;XM_005379389;XM_005379391;XM_005379392;XM_005379393;XM_005379394 XP_005379446;XP_005379448;XP_005379449;XP_005379450;XP_005379451 MODEL 8785200 protein-coding LOC102018763 uncharacterized LOC102018763 NW_004955527 8085 9252 + 102018763 AGCD01069371;GBDF01002839;XM_013507372 XP_013362826 MODEL 9055627 pseudo LOC102009574 40S ribosomal protein S12 pseudogene NW_004955406 11910786 11911430 - 102009574 AGCD01005898 MODEL 8938401 protein-coding Emcn endomucin ENCODES a protein that exhibits carbohydrate binding (ortholog); INVOLVED IN angiogenesis (ortholog); cell-cell adhesion (ortholog); hematopoietic stem cell homeostasis (ortholog); ASSOCIATED WITH thyroid gland carcinoma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955496 7413228 7498983 + 102020583 AGCD01062379;GBCQ01007628;XM_005406259;XM_005406260 XP_005406316;XP_005406317 MODEL 8774111 protein-coding Serpine2 serpin family E member 2 ENCODES a protein that exhibits glycosaminoglycan binding (ortholog); heparin binding (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN blood coagulation (ortholog); cerebellar granular layer morphogenesis (ortholog); dense core granule biogenesis (ortholog); PARTICIPATES IN fibrinolysis pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); asthma (ortholog); brain edema (ortholog); FOUND IN cytosol (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955453 10049822 10076155 + 102019660 AGCD01044782;GBDF01187903;XM_005395484 XP_005395541 MODEL 8700974 pseudo LOC102005496 probable ATP-dependent RNA helicase DDX41 pseudogene NW_004955433 1844022 1845319 - 102005496 AGCD01031371 MODEL 10134228 protein-coding LOC106148183 uncharacterized LOC106148183 NW_004955417 15241457 15253242 - 106148183 AGCD01018225;GBDF01015615;XM_013512703 XP_013368157 MODEL 9030311 protein-coding Slc13a2 solute carrier family 13 member 2 ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); citrate transmembrane transporter activity (ortholog); fumarate transmembrane transporter activity (ortholog); INVOLVED IN alpha-ketoglutarate transport (ortholog); cellular response to lithium ion (ortholog); fumarate transport (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955481 4650356 4674441 - 102003966 AGCD01056948;AGCD01056949;GBCQ01062860;XM_005402752 XP_005402809 MODEL 8950746 pseudo LOC102010742 pre-mRNA-splicing factor RBM22 pseudogene NW_004955444 6844758 6848013 + 102010742 AGCD01038875 MODEL 8857389 protein-coding Sdk2 sidekick cell adhesion molecule 2 INVOLVED IN camera-type eye photoreceptor cell differentiation (ortholog); homophilic cell-cell adhesion (ortholog); retina layer formation (ortholog); FOUND IN synapse (ortholog) NW_004955553 353190 614806 - 102003494 AGCD01072855;AGCD01072856;AGCD01072857;AGCD01072858;AGCD01072859;AGCD01072860;GBDJ01299393;GBDK01096005;XM_013508659 XP_013364113 MODEL 9028754 protein-coding Rabl2b RAB, member of RAS oncogene family like 2B ENCODES a protein that exhibits G protein activity (ortholog); GTP binding (ortholog); INVOLVED IN cilium assembly (ortholog); flagellated sperm motility (ortholog); intraciliary transport (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955413 33738999 33756374 - 102009705 AGCD01014688;AGCD01014689;GBCQ01155529;XM_005379599;XM_005379600;XM_013511655;XM_013511656 XP_005379656;XP_005379657;XP_013367109;XP_013367110 MODEL 8720378 protein-coding LOC102006569 olfactory receptor 51L1-like NW_004955414 21331309 21332259 - 102006569 AGCD01015415;XM_005380496 XP_005380553 MODEL 8916737 protein-coding LOC102015691 transcriptional activator protein Pur-beta-like NW_004955406 7173526 7174308 - 102015691 AGCD01005767;XM_005375453 XP_005375510 MODEL 8786469 protein-coding Prag1 PEAK1 related, kinase-activating pseudokinase 1 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); INVOLVED IN cell migration (ortholog); negative regulation of neuron projection development (ortholog); positive regulation of Rho protein signal transduction (ortholog); FOUND IN cytoplasm (ortholog); focal adhesion (ortholog); nucleus (ortholog) NW_004955463 4397246 4446696 - 102016357 AGCD01049605;GBDI01181338;GBDJ01076008;XM_005398353 XP_005398410 MODEL 8998335 pseudo LOC102025851 transmembrane protein 50A pseudogene NW_004955443 5769344 5769975 + 102025851 AGCD01038243 MODEL 8944146 protein-coding LOC102021695 olfactory receptor 4A15-like NW_004955511 61146 62063 - 102021695 AGCD01066313;XM_005408176 XP_005408233 MODEL 8928286 ncrna LOC102027911 uncharacterized LOC102027911 NW_004955444 8588283 8596515 - 102027911 AGCD01038942;GBDF01153308;XR_262252 MODEL 8970985 protein-coding LOC102017612 collagen alpha-1(X) chain-like NW_004955570 1578957 1598463 + 102017612 AGCD01074819;AGCD01074820;GBCE01055045;XM_005413619;XM_005413620;XM_005413621;XM_005413622;XM_005413623;XM_013509428;XM_013509429;XM_013509430;XM_013509431;XM_013509432;XM_013509433;XR_001232435;XR_001232436 XP_005413676;XP_005413677;XP_005413678;XP_005413679;XP_005413680;XP_013364882;XP_013364883;XP_013364884;XP_013364885;XP_013364886;XP_013364887 MODEL 8979727 protein-coding Rax retina and anterior neural fold homeobox ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN brain development (ortholog); camera-type eye development (ortholog); hypothalamus development (ortholog); ASSOCIATED WITH Anophthalmia (ortholog); Craniofacial Abnormalities (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog) NW_004955402 43408933 43414697 - 102006190 AGCD01001072;AGCD01001073;GBDJ01056238;XM_005373175 XP_005373232 MODEL 8983611 ncrna LOC102003724 uncharacterized LOC102003724 NW_004955452 17445620 17459241 - 102003724 AGCD01044554;AGCD01044555;GBDI01162489;XR_262704 MODEL 8931538 protein-coding Resf1 retroelement silencing factor 1 ENCODES a protein that exhibits histone methyltransferase binding (ortholog); INVOLVED IN response to bacterium (ortholog); transposable element silencing by heterochromatin formation (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955505 3684848 3709624 - 102011340 AGCD01065047;GBDJ01085100;XM_005407130;XM_005407131;XM_013505939 XP_005407187;XP_005407188;XP_013361393 MODEL 8707558 protein-coding Rimoc1 RAB7A interacting MON1-CCZ1 complex subunit 1 INVOLVED IN mitophagy (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955426 26026284 26040311 + 102027428 AGCD01026735;GBCE01122894;XM_005386249;XM_005386250;XM_005386251;XM_013514996;XM_013514997 XP_005386306;XP_005386307;XP_005386308;XP_013370450;XP_013370451 MODEL 8886810 protein-coding Pde7b phosphodiesterase 7B ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH prostate cancer (ortholog) NW_004955439 686197 985591 - 102025844 AGCD01035593;AGCD01035594;AGCD01035595;GBCE01171155;XM_005390481;XM_005390482;XM_005390484;XM_013517377;XM_013517378 XP_005390538;XP_005390539;XP_005390541;XP_013372831;XP_013372832 MODEL 8748761 protein-coding Patz1 POZ/BTB and AT hook containing zinc finger 1 ENCODES a protein that exhibits chromatin binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN male gonad development (ortholog); negative regulation of endothelial cell migration (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Ependymomas (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955455 5544841 5566630 - 102007625 AGCD01045738;AGCD01045739;GBBH01118873;GBDJ01176831;XM_005396307;XM_005396308;XM_005396309 XP_005396364;XP_005396365;XP_005396366 MODEL 10354886 ncrna LOC106149928 uncharacterized LOC106149928 NW_004955457 12921287 12930631 + 106149928 AGCD01047033;XR_001236411 MODEL 8880619 protein-coding Rtraf RNA transcription, translation and transport factor ENCODES a protein that exhibits identical protein binding (ortholog); RNA binding (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN negative regulation of protein kinase activity (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); tRNA splicing, via endonucleolytic cleavage and ligation (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); mitotic spindle (ortholog) NW_004955409 11034815 11049400 - 102012165 AGCD01009497;AGCD01009498;AY533217;GBCB01006025;XM_005376787 AAS59420;XP_005376844 MODEL 8879541 protein-coding Pvrig PVR related immunoglobulin domain containing ENCODES a protein that exhibits phosphatase binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN negative regulation of T cell receptor signaling pathway (ortholog); FOUND IN plasma membrane (ortholog) NW_004955573 592438 595056 - 102011063 AGCD01074994;GBDK01306774;XM_013509498;XM_013509499;XM_013509500;XM_013509501;XM_013509502 XP_013364952;XP_013364953;XP_013364954;XP_013364955;XP_013364956 MODEL 9061456 protein-coding LOC102010328 putative tripartite motif-containing protein 64C NW_004955790 9857 10650 + 102010328 AGCD01078353;XM_013510192 XP_013365646 MODEL 8792532 protein-coding Lhx5 LIM homeobox 5 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell proliferation in forebrain (ortholog); cell-cell signaling (ortholog); cerebellar Purkinje cell differentiation (ortholog) NW_004955482 9682671 9691155 - 102018930 AGCD01057581;XM_005403229 XP_005403286 MODEL 8725587 protein-coding Brme1 break repair meiotic recombinase recruitment factor 1 ENCODES a protein that exhibits damaged DNA binding (ortholog); INVOLVED IN double-strand break repair involved in meiotic recombination (ortholog); female meiosis I (ortholog); male meiosis I (ortholog); FOUND IN chromosome (ortholog); site of double-strand break (ortholog) NW_004955415 32652978 32667873 - 102015838 AGCD01016730;GBBH01138965;XM_013512198;XM_013512199;XM_013512200;XM_013512201;XM_013512202;XM_013512203;XM_013512204;XM_013512205;XM_013512206;XM_013512207 XP_013367652;XP_013367653;XP_013367654;XP_013367655;XP_013367656;XP_013367657;XP_013367658;XP_013367659;XP_013367660;XP_013367661 MODEL 8838233 protein-coding Smarcc1 SWI/SNF related BAF chromatin remodeling complex subunit C1 ENCODES a protein that exhibits ATP-dependent chromatin remodeler activity (ortholog); chromatin binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); chromatin remodeling (ortholog); insulin receptor signaling pathway (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Animal Disease Models (ortholog); autism spectrum disorder (ortholog); FOUND IN cytoplasm (ortholog); nBAF complex (ortholog); npBAF complex (ortholog) NW_004955420 24594057 24729108 + 102012864 AGCD01021322;AGCD01021323;AGCD01021324;AGCD01021325;AGCD01021326;AGCD01021327;AGCD01021328;AGCD01021329;GBCQ01072893;GBDF01087903;XM_013513379;XM_013513380 XP_013368833;XP_013368834 MODEL 8779107 protein-coding Thnsl1 threonine synthase like 1 FOUND IN mitochondrion (ortholog) NW_004955429 4169170 4208097 - 102008131 AGCD01028482;AGCD01028483;GBDF01080744;XM_005386902;XM_005386903;XM_005386904;XM_013515491;XM_013515492;XM_013515493 XP_005386959;XP_005386960;XP_005386961;XP_013370945;XP_013370946;XP_013370947 MODEL 8772275 ncrna LOC102012713 uncharacterized LOC102012713 NW_004955599 522218 526724 - 102012713 AGCD01076655;GBDI01339273;XR_001232551;XR_001232552;XR_265154 MODEL 8943180 protein-coding Trim32 tripartite motif containing 32 ENCODES a protein that exhibits identical protein binding (ortholog); myosin binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN actin ubiquitination (ortholog); antiviral innate immune response (ortholog); autophagosome assembly (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2H (ortholog); Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 11 (ortholog); FOUND IN autophagosome (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955419 11151751 11168046 - 102003875 AGCD01019953;GBDF01241008;XM_005382612;XM_005382613;XM_005382614;XM_005382615;XM_005382616;XM_013513264 XP_005382669;XP_005382670;XP_005382671;XP_005382672;XP_005382673;XP_013368718 MODEL 8863514 protein-coding LOC102023422 olfactory receptor 7C1-like NW_004955626 22772 23710 + 102023422 AGCD01077461;XM_005415025 XP_005415082 MODEL 8809546 ncrna LOC102027217 uncharacterized LOC102027217 NW_004955513 3912970 3915172 - 102027217 AGCD01066912;XR_264471 MODEL 8770946 protein-coding Psme4 proteasome activator subunit 4 ENCODES a protein that exhibits peptidase activator activity (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); proteasomal ubiquitin-independent protein catabolic process (ortholog); ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); visceral heterotaxy (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955441 19586567 19663335 - 102004326 AGCD01037356;AGCD01037357;AGCD01037358;GBCE01134980;GBDJ01020753;XM_013517590 XP_013373044 MODEL 626189209 snorna SNORA51 small nucleolar RNA, H/ACA box 51 8722068 protein-coding Snrpn small nuclear ribonucleoprotein polypeptide N INVOLVED IN response to hormone (ortholog); ASSOCIATED WITH Angelman syndrome (ortholog); autistic disorder (ortholog); Prader-Willi syndrome (ortholog); FOUND IN U1 snRNP (ortholog); U2 snRNP (ortholog) NW_004955416 31668789 31674144 + 102023030 AGCD01017768;XM_013512673 XP_013368127 MODEL 8920677 protein-coding Rabl3 RAB, member of RAS oncogene family like 3 ENCODES a protein that exhibits G protein activity (ortholog); GTP binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN B cell differentiation (ortholog); natural killer cell differentiation (ortholog); positive regulation of cilium assembly (ortholog); ASSOCIATED WITH pancreatic cancer (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955427 20204901 20242242 - 102026552 AGCD01027394;GBDK01170275;XM_005386473;XM_005386474;XM_005386475 XP_005386530;XP_005386531;XP_005386532 MODEL 9055067 protein-coding Sdr16c5 short chain dehydrogenase/reductase family 16C member 5 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); DNA-binding transcription factor binding (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN keratinocyte proliferation (ortholog); negative regulation of gene expression, epigenetic (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN chromatin (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955454 15339353 15349180 - 102013796 AGCD01045492;GBDF01082585;XM_005396088 XP_005396145 MODEL 8952634 pseudo LOC102006941 eukaryotic translation initiation factor 5A-2 pseudogene NW_004955433 470536 470996 - 102006941 AGCD01031323 MODEL 8856605 ncrna LOC102028926 uncharacterized LOC102028926 NW_004955404 36181612 36212906 + 102028926 AGCD01004154;AGCD01004155;GBDF01046469;XR_259333 MODEL 8798820 protein-coding Plcb4 phospholipase C beta 4 ENCODES a protein that exhibits mitogen-activated protein kinase binding (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); negative regulation of potassium ion transport (ortholog); phospholipase C-activating endothelin receptor signaling pathway (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH Auriculocondylar Syndrome (ortholog); Auriculocondylar Syndrome 1 (ortholog); Auriculocondylar Syndrome 2 (ortholog); FOUND IN dendrite (ortholog); glutamatergic synapse (ortholog); nucleus (ortholog) NW_004955415 19108120 19462084 + 102021754 AGCD01016463;AGCD01016464;AGCD01016465;AGCD01016466;AGCD01016467;AGCD01016468;AGCD01016469;AGCD01016470;GBCE01136647;JN633115;XM_005380864;XM_005380865;XM_005380866;XM_013512269;XM_013512270;XM_013512271 XP_005380921;XP_005380922;XP_005380923;XP_013367723;XP_013367724;XP_013367725 MODEL 8891795 protein-coding Ppargc1a PPARG coactivator 1 alpha ENCODES a protein that exhibits alpha-tubulin binding (ortholog); chromatin binding (ortholog); chromatin DNA binding (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); adipose tissue development (ortholog); autophagy of mitochondrion (ortholog); PARTICIPATES IN aldosterone signaling pathway; mTOR signaling pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); acute kidney failure (ortholog); age related macular degeneration (ortholog); FOUND IN apical dendrite (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955480 543397 1188376 + 102026424 AGCD01056582;AGCD01056583;AGCD01056584;AGCD01056585;AGCD01056586;AGCD01056587;AGCD01056588;AGCD01056589;AGCD01056590;AGCD01056591;AGCD01056592;GBCQ01054630;XM_005402462;XM_005402463;XM_005402464;XM_013503332 XP_005402519;XP_005402520;XP_005402521;XP_013358786 MODEL 8909277 ncrna LOC102028568 uncharacterized LOC102028568 NW_004955434 2469176 2681656 - 102028568 AGCD01032096;AGCD01032097;AGCD01032098;AGCD01032099;AGCD01032100;AGCD01032101;AGCD01032102;AGCD01032103;AGCD01032104;AGCD01032105;GBDI01144062;XR_001234782;XR_001234783;XR_001234784;XR_001234785;XR_001234786;XR_001234787;XR_001234788;XR_001234789;XR_001234790;XR_001234791 MODEL 9025720 protein-coding LOC102009577 keratin-associated protein 20-2-like NW_004955407 30220342 30220545 + 102009577 AGCD01007628;XM_005375648 XP_005375705 MODEL 10229536 protein-coding LOC106148184 translation initiation factor IF-2-like NW_004955417 27214808 27222019 - 106148184 AGCD01018540;XM_013512705 XP_013368159 MODEL 8917789 pseudo LOC102026227 pleckstrin homology domain-containing family A member 3 pseudogene NW_004955494 529646 530542 + 102026227 AGCD01061380 MODEL 8949885 pseudo LOC102030367 hydroxysteroid dehydrogenase-like protein 2 pseudogene NW_004955402 36437012 36440740 - 102030367 AGCD01000924 MODEL 8872121 ncrna LOC102011505 uncharacterized LOC102011505 NW_004955456 6097044 6102845 - 102011505 AGCD01046363;GBDF01134376;XR_262883 MODEL 39133361 snrna U4 U4 spliceosomal RNA 8980989 protein-coding Slc13a3 solute carrier family 13 member 3 ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); citrate transmembrane transporter activity (ortholog); dicarboxylic acid transmembrane transporter activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); citrate transport (ortholog); dicarboxylic acid transport (ortholog); ASSOCIATED WITH Acute Reversible Leukoencephalopathy with Increased Urinary Alpha-ketoglutarate (ortholog); prostate cancer (ortholog); FOUND IN basolateral plasma membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955445 10755336 10829797 + 102017174 AGCD01039679;GBDF01074885;XM_005392372;XM_005392373;XM_013518382;XM_013518383;XM_013518384 XP_005392429;XP_005392430;XP_013373836;XP_013373837;XP_013373838 MODEL 8945721 ncrna LOC102011096 uncharacterized LOC102011096 NW_004955463 13120267 13130733 + 102011096 AGCD01049861;GBBH01212613;XR_001236627 MODEL 8731934 pseudo LOC102027912 U6 snRNA-associated Sm-like protein LSm8 pseudogene NW_004955562 13581 15620 - 102027912 AGCD01073884 MODEL 8920570 ncrna LOC102019194 uncharacterized LOC102019194 NW_004955513 2803458 2806011 + 102019194 AGCD01066890;GBDK01230384;XR_001231760;XR_264459 MODEL 8764333 protein-coding Pram1 PML-RARA regulated adaptor molecule 1 ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN integrin-mediated signaling pathway (ortholog); regulation of neutrophil degranulation (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955563 924365 933198 + 102011059 AGCD01074097;GBDJ01338971;XM_005413115;XM_005413116;XM_005413117;XM_005413118 XP_005413172;XP_005413173;XP_005413174;XP_005413175 MODEL 8886605 ncrna LOC102018765 uncharacterized LOC102018765 NW_004955533 928041 929816 - 102018765 AGCD01070335;GBCB01020311;XR_264741 MODEL 8924153 protein-coding Prps1 phosphoribosyl pyrophosphate synthetase 1 ENCODES a protein that exhibits ADP binding (ortholog); AMP binding (ortholog); ATP binding (ortholog); INVOLVED IN 5-phosphoribose 1-diphosphate biosynthetic process (ortholog); AMP biosynthetic process (ortholog); animal organ regeneration (ortholog); PARTICIPATES IN de novo purine biosynthetic pathway; ASSOCIATED WITH Arts syndrome (ortholog); Charcot-Marie-Tooth disease type X (ortholog); Charcot-Marie-Tooth disease X-linked recessive 5 (ortholog); FOUND IN cytosol (ortholog); protein-containing complex (ortholog); ribose phosphate diphosphokinase complex (ortholog) NW_004955490 8303775 8330713 - 102019073 AGCD01060279;AGCD01060280;GBBH01207860;XM_005404697 XP_005404754 MODEL 8957090 ncrna LOC102005498 uncharacterized LOC102005498 NW_004955522 4121118 4127681 - 102005498 AGCD01068413;GBDF01226154;XR_001231895;XR_264630 MODEL 8832618 protein-coding Rabl6 RAB, member RAS oncogene family like 6 ENCODES a protein that exhibits GTP binding (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); intellectual disability (ortholog); Meniere's disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955513 4904659 4923225 + 102024266 AGCD01066943;GBDI01117495;XM_005408556 XP_005408613 MODEL 8706302 protein-coding Emd emerin ENCODES a protein that exhibits actin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN amyloid fibril formation (ortholog); cellular response to growth factor stimulus (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); dilated cardiomyopathy (ortholog); FOUND IN cortical endoplasmic reticulum (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955580 864532 866904 - 102027697 AGCD01075627;GBDK01089927;XM_005414187 XP_005414244 MODEL 8867970 protein-coding Tor1b torsin family 1 member B ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); identical protein binding (ortholog); INVOLVED IN endoplasmic reticulum organization (ortholog); nuclear membrane organization (ortholog); ASSOCIATED WITH Human Influenza (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog) NW_004955513 23118 29401 + 102012462 AGCD01066810;GBDJ01227651;XM_005408330 XP_005408387 MODEL 8924525 pseudo LOC102010743 olfactory receptor 7G1-like NW_004955563 294341 295318 - 102010743 AGCD01074059 MODEL 8894400 protein-coding Rttn rotatin INVOLVED IN determination of left/right symmetry (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955402 53600985 53753218 - 102005430 AGCD01001370;AGCD01001371;GBDF01281354;XM_005373054 XP_005373111 MODEL 9023981 protein-coding LOC102006574 profilin-1-like NW_004955475 4545432 4545893 + 102006574 AGCD01054882;GBDF01303632;XM_005401561 XP_005401618 MODEL 8758910 protein-coding Lhx6 LIM homeobox 6 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell maturation (ortholog); cerebral cortex GABAergic interneuron migration (ortholog); cerebral cortex neuron differentiation (ortholog); FOUND IN nucleus (ortholog) NW_004955419 5835230 5858096 + 102010588 AGCD01019840;GBBH01224881;GBCE01185662;XM_005382538;XM_005382540;XM_013513079;XM_013513080;XM_013513081 XP_005382595;XP_005382597;XP_013368533;XP_013368534;XP_013368535 MODEL 8877323 protein-coding LOC102015695 olfactory receptor 10A7 NW_004955458 2359659 2360621 + 102015695 AGCD01047227;XM_005397494 XP_005397551 MODEL 8909667 protein-coding Thnsl2 threonine synthase like 2 ENCODES a protein that exhibits phosphatase activity (ortholog); pyridoxal phosphate binding (ortholog); serine binding (ortholog) NW_004955424 526967 543603 - 102012450 AGCD01024178;GBDK01318952;XM_005385380 XP_005385437 MODEL 8955450 pseudo LOC102021699 protein SET-like NW_004955523 1341486 1342336 - 102021699 AGCD01068514 MODEL 9050909 protein-coding Slc4a5 solute carrier family 4 member 5 ENCODES a protein that exhibits sodium:bicarbonate symporter activity (ortholog); INVOLVED IN cerebrospinal fluid secretion (ortholog); epithelial cell development (ortholog); mitochondrion distribution (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955424 11426020 11537141 + 102003983 AGCD01024566;AGCD01024567;AGCD01024568;GBDF01158181;XM_005385520;XM_005385521;XM_005385522;XM_005385523;XM_013514621 XP_005385577;XP_005385578;XP_005385579;XP_005385580;XP_013370075 MODEL 41410897 snorna SNORA52 small nucleolar RNA, H/ACA box 52 8847787 protein-coding Smarcc2 SWI/SNF related BAF chromatin remodeling complex subunit C2 ENCODES a protein that exhibits ATP-dependent chromatin remodeler activity (ortholog); chromatin binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH Coffin-Siris syndrome 1 (ortholog); Coffin-Siris syndrome 8 (ortholog); genetic disease (ortholog); FOUND IN nBAF complex (ortholog); npBAF complex (ortholog); nucleoplasm (ortholog) NW_004955458 3764823 3787159 - 102027049 AGCD01047344;AGCD01047345;GBCB01038863;GBDK01076811;XM_013520814;XM_013520815;XM_013520816;XM_013520817;XM_013520818;XM_013520820;XM_013520821;XM_013520822 XP_013376268;XP_013376269;XP_013376270;XP_013376271;XP_013376272;XP_013376274;XP_013376275;XP_013376276 MODEL 9054207 protein-coding Slc13a4 solute carrier family 13 member 4 ENCODES a protein that exhibits sodium:sulfate symporter activity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); liver cirrhosis (ortholog) NW_004955494 7013577 7057767 + 102009072 AGCD01061545;GBDJ01270862;XM_005405472;XM_013505027 XP_005405529;XP_013360481 MODEL 8717228 protein-coding Psmf1 proteasome inhibitor subunit 1 ENCODES a protein that exhibits proteasome binding (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN negative regulation of proteasomal protein catabolic process (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955596 381080 414307 + 102011068 AGCD01076517;GBDF01007515;XM_005414689 XP_005414746 MODEL 9061509 protein-coding Wbp4 WW domain binding protein 4 ENCODES a protein that exhibits proline-rich region binding (ortholog); INVOLVED IN mRNA cis splicing, via spliceosome (ortholog); mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH NEURODEVELOPMENTAL DISORDER WITH HYPOTONIA, FEEDING DIFFICULTIES, FACIAL DYSMORPHISM, AND BRAIN ABNORMALITIES (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955404 51046245 51094245 + 102011395 AGCD01004543;AGCD01004544;AGCD01004545;AGCD01004546;AGCD01004547;GBBH01214258;GBCE01024729;XM_013516774;XM_013516775 XP_013372228;XP_013372229 MODEL 8900219 protein-coding Rb1 RB transcriptional corepressor 1 ENCODES a protein that exhibits disordered domain specific binding (ortholog); DNA-binding transcription factor binding (ortholog); enzyme binding (ortholog); INVOLVED IN aortic valve morphogenesis (ortholog); apoptotic process (ortholog); cell division (ortholog); PARTICIPATES IN ceramide signaling pathway; G1/S transition pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH Acute Erythroleukemia (ortholog); acute kidney failure (ortholog); acute lymphoblastic leukemia (ortholog); FOUND IN chromatin lock complex (ortholog); cyclin/CDK positive transcription elongation factor complex (ortholog); cytoplasm (ortholog) NW_004955431 1960765 2124576 + 102016082 AGCD01029919;AGCD01029920;AGCD01029921;AGCD01029922;AGCD01029923;GBCQ01126218;XM_005387557 XP_005387614 MODEL 8860724 protein-coding LOC102008468 vomeronasal type-2 receptor 116-like NW_004955563 153803 168288 + 102008468 AGCD01074047;AGCD01074048;AGCD01074049;XM_005413196 XP_005413253 MODEL 8891018 protein-coding Sdr39u1 short chain dehydrogenase/reductase family 39U member 1 FOUND IN mitochondrion (ortholog) NW_004955409 35867944 35870847 + 102026193 AGCD01010435;GBDF01083948;XM_005377000;XM_013510391 XP_005377057;XP_013365845 MODEL 8774795 protein-coding Pawr pro-apoptotic WT1 regulator ENCODES a protein that exhibits actin binding (ortholog); enzyme binding (ortholog); leucine zipper domain binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); apoptotic process (ortholog); apoptotic signaling pathway (ortholog); PARTICIPATES IN ceramide signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); adenocarcinoma (ortholog); Alzheimer's disease (ortholog); FOUND IN actin filament (ortholog); axon (ortholog); chromatin (ortholog) NW_004955405 18434711 18540710 - 102023771 AGCD01005017;AGCD01005018;AGCD01005019;AGCD01005020;GBCC01021183;GBCE01134585;XM_013517857 XP_013373311 MODEL 8725804 protein-coding LOC102024443 taste receptor type 2 member 140-like NW_004955413 8151739 8152674 - 102024443 AGCD01013852;XM_005379630 XP_005379687 MODEL 10201666 ncrna LOC106149929 uncharacterized LOC106149929 NW_004955457 12855868 12856884 + 106149929 AGCD01047028;GBCB01050707;XR_001236412 MODEL 10114782 ncrna LOC106147087 uncharacterized LOC106147087 NW_004955408 35473043 35581443 + 106147087 AGCD01008946;AGCD01008947;AGCD01008948;AGCD01008949;AGCD01008950;AGCD01008951;AGCD01008952;AGCD01008953;AGCD01008954;AGCD01008955;AGCD01008956;AGCD01008957;XR_001231823;XR_001231824;XR_001231826 MODEL 8785654 pseudo LOC102010330 translationally-controlled tumor protein pseudogene NW_004955452 860898 861359 - 102010330 AGCD01043827 MODEL 8797274 ncrna LOC102028577 uncharacterized LOC102028577 NW_004955438 8471986 8557824 + 102028577 AGCD01035160;AGCD01035161;GBCE01150849;XR_001235165;XR_261920 MODEL 9036153 protein-coding Brms1 BRMS1 transcriptional repressor and anoikis regulator ENCODES a protein that exhibits NF-kappaB binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of anoikis (ortholog); positive regulation of protein deacetylation (ortholog); ASSOCIATED WITH invasive ductal carcinoma (ortholog); Neoplasm Invasiveness (ortholog); Neoplasm Metastasis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955422 18981984 18989730 + 102014370 AGCD01022970;GBDJ01187942;XM_005384413;XM_005384415;XM_005384417;XM_013514159 XP_005384470;XP_005384472;XP_005384474;XP_013369613 MODEL 8930943 protein-coding Pwp1 PWP1 homolog, endonuclein ENCODES a protein that exhibits histone H4K20me3 reader activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of stem cell differentiation (ortholog); positive regulation of transcription of nucleolar large rRNA by RNA polymerase I (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955405 41314978 41329988 + 102027711 AGCD01005546;AGCD01005547;GBDF01048521;XM_005374640 XP_005374697 MODEL 8794290 protein-coding Ppargc1b PPARG coactivator 1 beta ENCODES a protein that exhibits AF-2 domain binding (ortholog); nuclear estrogen receptor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN estrogen receptor signaling pathway (ortholog); positive regulation of cold-induced thermogenesis (ortholog); positive regulation of osteoclast differentiation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Breast Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN mediator complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955415 4638057 4756885 - 102020656 AGCD01015976;AGCD01015977;AGCD01015978;AGCD01015979;AGCD01015980;GBCB01075411;XM_005380593;XM_013512327;XM_013512328 XP_005380650;XP_013367781;XP_013367782 MODEL 8956923 protein-coding LOC102025853 zinc finger protein 878-like NW_004955569 119683 145674 + 102025853 AGCD01074561;AGCD01074562;AGCD01074563;GBDJ01003786;XM_005413489;XM_005413490 XP_005413546;XP_005413547 MODEL 8771658 protein-coding LOC102030368 huntingtin-interacting protein M NW_004955601 262236 262813 + 102030368 AGCD01076750;GBDF01001007;XM_005414826 XP_005414883 MODEL 9003830 protein-coding LOC102009579 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase NW_004955456 8783121 8961174 + 102009579 AGCD01046502;AGCD01046503;AGCD01046504;GBDF01082105;XM_005396723;XM_013520568;XM_013520569;XM_013520570;XM_013520571 XP_005396780;XP_013376022;XP_013376023;XP_013376024;XP_013376025 MODEL 8916131 pseudo LOC102012714 heterogeneous nuclear ribonucleoprotein A3-like NW_004955402 57336253 57364330 - 102012714 AGCD01001495 MODEL 9044543 protein-coding Eme1 essential meiotic structure-specific endonuclease 1 ENCODES a protein that exhibits crossover junction DNA endonuclease activity (ortholog); DNA binding (ortholog); INVOLVED IN double-strand break repair (ortholog); replication fork processing (ortholog); resolution of mitotic recombination intermediates (ortholog); FOUND IN chromatin (ortholog); endodeoxyribonuclease complex (ortholog); heterochromatin (ortholog) NW_004955451 11328759 11336099 - 102014521 AGCD01043349;GBDK01116633;XM_005394175;XM_013519096 XP_005394232;XP_013374550 MODEL 8913820 ncrna LOC102003727 uncharacterized LOC102003727 NW_004955453 14568514 14584297 - 102003727 AGCD01044871;GBDF01078382;XR_262740 MODEL 9040282 protein-coding LOC102010745 zinc finger protein 20-like NW_004955569 269498 273133 + 102010745 AGCD01074571;XM_005413507 XP_005413564 MODEL 8738421 protein-coding Resp18 regulated endocrine specific protein 18 INVOLVED IN in utero embryonic development (ortholog); ASSOCIATED WITH cerebrotendinous xanthomatosis (ortholog); hypertension (ortholog); renal fibrosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog); Golgi lumen (ortholog) NW_004955453 14106430 14111920 + 102008493 AGCD01044858;GBDI01385707;XM_005395532 XP_005395589 MODEL 8799976 protein-coding LOC102017615 zinc finger protein 324A NW_004955584 1087372 1099232 + 102017615 AGCD01075978;AGCD01075979;AGCD01075980;GBBH01102143;XM_005414387 XP_005414444 MODEL 8713337 pseudo LOC102011101 HAUS augmin-like complex subunit 6 pseudogene NW_004955467 12349080 12357812 + 102011101 AGCD01051631;XR_263364 MODEL 8944498 ncrna LOC102006949 uncharacterized LOC102006949 NW_004955528 1918029 1919886 + 102006949 AGCD01069576;GBCQ01125233;XR_264700 MODEL 8968516 ncrna LOC102027915 uncharacterized LOC102027915 NW_004955446 6648280 6660554 + 102027915 AGCD01040101;GBBH01097208;XR_262376 MODEL 8815275 pseudo LOC102019195 60S ribosomal protein L23a pseudogene NW_004955515 3451273 3452933 - 102019195 AGCD01067286 MODEL 9002970 protein-coding Pde8a phosphodiesterase 8A ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); kinase binding (ortholog); INVOLVED IN cellular response to epidermal growth factor stimulus (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway NW_004955416 14063117 14204297 - 102009174 AGCD01017242;AGCD01017243;AGCD01017244;AGCD01017245;AGCD01017246;AGCD01017247;GBDF01307363;XM_005381485;XM_013512564 XP_005381542;XP_013368018 MODEL 8869787 ncrna LOC102018766 uncharacterized LOC102018766 NW_004955437 5832129 5834651 + 102018766 AGCD01034403;GBDF01189685;XR_261858 MODEL 10197100 protein-coding LOC106148185 MICAL-like protein 1 NW_004955417 27332474 27336868 - 106148185 AGCD01018548;GBDF01103669;XM_013512706 XP_013368160 MODEL 9034662 protein-coding Plcd1 phospholipase C delta 1 ENCODES a protein that exhibits C-type glycerophospholipase activity (ortholog); calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to calcium ion (ortholog); G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN G protein mediated signaling pathway; ASSOCIATED WITH alopecia (ortholog); Alzheimer's disease (ortholog); congestive heart failure (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog) NW_004955421 4856366 4880309 - 102012763 AGCD01021703;AGCD01021704;GBCE01115444;XM_005383723;XM_005383724;XM_005383725 XP_005383780;XP_005383781;XP_005383782 MODEL 8949061 protein-coding Prps1l1 phosphoribosyl pyrophosphate synthetase 1 like 1 INVOLVED IN male gonad development (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway NW_004955410 20987289 20988852 - 102024983 AGCD01011054;GBDF01044095;XM_005377343 XP_005377400 MODEL 8904613 pseudo LOC102011508 small glutamine-rich tetratricopeptide repeat-containing protein beta pseudogene NW_004955458 14795983 14797440 + 102011508 AGCD01047847 MODEL 8869926 pseudo LOC102023429 Golgi-associated plant pathogenesis-related protein 1 pseudogene NW_004955405 17787571 17788068 + 102023429 AGCD01005008;XM_005374687 MODEL 39133362 snrna U4 U4 spliceosomal RNA 8796556 protein-coding Rac1 Rac family small GTPase 1 ENCODES a protein that exhibits ATPase binding (ortholog); enzyme binding (ortholog); G protein activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); actin filament polymerization (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; azathioprine pharmacodynamics pathway; c-Jun N-terminal kinases MAPK signaling pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 48 (ortholog); breast cancer (ortholog); Cardiomegaly (ortholog); FOUND IN actin filament (ortholog); cell cortex (ortholog); cytoplasm (ortholog) NW_004955460 13270159 13295562 - 102024434 AGCD01048678;AGCD01048679;AGCD01048680;GBBH01002085;GBDF01048986;XM_013521169 XP_013376623 MODEL 8735981 ncrna LOC102027222 uncharacterized LOC102027222 NW_004955522 3281958 3313821 - 102027222 AGCD01068381;GBDF01193590;XR_001231908;XR_001231909;XR_264621 MODEL 8784143 ncrna LOC102006577 uncharacterized LOC102006577 NW_004955417 25228937 25242091 - 102006577 AGCD01018475;GBDF01078277;XR_260491 MODEL 9055104 ncrna LOC102015696 uncharacterized LOC102015696 NW_004955409 6044092 6050179 + 102015696 AGCD01009329;GBDF01110555;XR_001232625;XR_259756 MODEL 8820757 protein-coding Brms1l BRMS1 like transcriptional repressor FOUND IN nucleoplasm (ortholog) NW_004955409 25286312 25319557 - 102027153 AGCD01010110;AGCD01010111;AGCD01010112;GBDI01025327;XM_005376913 XP_005376970 MODEL 8941422 protein-coding Snta1 syntrophin alpha 1 ENCODES a protein that exhibits ATPase binding (ortholog); dystroglycan binding (ortholog); nitric-oxide synthase binding (ortholog); INVOLVED IN neuromuscular junction development (ortholog); regulation of heart rate (ortholog); regulation of sodium ion transmembrane transport (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH atrial fibrillation (ortholog); Becker muscular dystrophy (ortholog); Brugada syndrome (ortholog); FOUND IN neuromuscular junction (ortholog); postsynaptic membrane (ortholog); protein-containing complex (ortholog) NW_004955422 27844699 27872104 + 102003779 AGCD01023337;AGCD01023338;AGCD01023339;GBBH01006232;GBDF01306217;XM_013514317 XP_013369771 MODEL 9019592 protein-coding Prame PRAME nuclear receptor transcriptional regulator ENCODES a protein that exhibits nuclear retinoic acid receptor binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of cell differentiation (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute megakaryocytic leukemia (ortholog); acute myeloid leukemia (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); Cul2-RING ubiquitin ligase complex (ortholog) NW_004955455 6921420 6930453 - 102022356 AGCD01045818;GBDF01080426;XM_005396356;XM_013520391 XP_005396413;XP_013375845 MODEL 8907285 protein-coding Eme2 essential meiotic structure-specific endonuclease subunit 2 ENCODES a protein that exhibits DNA endonuclease activity (ortholog); enzyme-substrate adaptor activity (ortholog); INVOLVED IN double-strand break repair (ortholog); replication fork processing (ortholog); resolution of mitotic recombination intermediates (ortholog); FOUND IN chromosome, telomeric region (ortholog); endodeoxyribonuclease complex (ortholog); nuclear replication fork (ortholog) NW_004955442 15492925 15496639 - 102020060 AGCD01037875;GBBH01185829;XM_005391517 XP_005391574 MODEL 9026631 pseudo LOC102026229 lysine-rich coiled-coil protein 1-like NW_004955422 24105442 24108369 + 102026229 AGCD01023215 MODEL 8991702 protein-coding Slc4a7 solute carrier family 4 member 7 ENCODES a protein that exhibits sodium:bicarbonate symporter activity (ortholog); INVOLVED IN auditory receptor cell development (ortholog); camera-type eye photoreceptor cell differentiation (ortholog); cellular response to growth factor stimulus (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); fundus dystrophy (ortholog); lung adenocarcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cytoplasm (ortholog) NW_004955430 18991615 19059590 - 102017367 AGCD01029704;GBBH01198258;GBCQ01154648;XM_013515625 XP_013371079 MODEL 8775433 pseudo LOC102024447 acidic leucine-rich nuclear phosphoprotein 32 family member E pseudogene NW_004955414 22245541 22246767 + 102024447 AGCD01015449 MODEL 8773316 protein-coding Wdcp WD repeat and coiled coil containing ENCODES a protein that exhibits kinase binding (ortholog); INVOLVED IN protein complex oligomerization (ortholog) NW_004955469 6236653 6261753 - 102023140 AGCD01052374;AGCD01052375;GBCE01018761;XM_005400370;XM_005400371 XP_005400427;XP_005400428 MODEL 8832697 protein-coding Lhx8 LIM homeobox 8 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN female gonad development (ortholog); forebrain neuron development (ortholog); forebrain neuron differentiation (ortholog); ASSOCIATED WITH Binge Drinking (ortholog); FOUND IN female germ cell nucleus (ortholog) NW_004955423 17644691 17668969 - 102026542 AGCD01023858;AGCD01023859;GBBH01120861;XM_013514370 XP_013369824 MODEL 8719559 pseudo LOC102025857 tyrosine-protein phosphatase non-receptor type 9 pseudogene NW_004955578 378235 383809 + 102025857 AGCD01075479 MODEL 8810303 pseudo LOC102028927 60S ribosomal protein L32 pseudogene NW_004955404 40684297 40684702 + 102028927 AGCD01004310 MODEL 8843586 protein-coding Ppat phosphoribosyl pyrophosphate amidotransferase ENCODES a protein that exhibits amidophosphoribosyltransferase activity (ortholog); identical protein binding (ortholog); INVOLVED IN 'de novo' AMP biosynthetic process (ortholog); 'de novo' IMP biosynthetic process (ortholog); 'de novo' XMP biosynthetic process (ortholog); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); Experimental Liver Neoplasms (ortholog); hepatocellular carcinoma (ortholog) NW_004955447 14552846 14607416 + 102027586 AGCD01041014;AGCD01041015;AGCD01041016;GBDF01188418;XM_005392870;XM_005392871;XM_013518498;XM_013518499 XP_005392927;XP_005392928;XP_013373952;XP_013373953 MODEL 9050595 protein-coding Thoc1 THO complex 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mRNA export from nucleus (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness 86 (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); nuclear speck (ortholog) NW_004955402 9675211 9708045 + 102018246 AGCD01000228;GBDI01007496;GBDJ01229393;XM_013519833 XP_013375287 MODEL 9007062 ncrna LOC102011112 uncharacterized LOC102011112 NW_004955415 26765225 26765881 - 102011112 AGCD01016604;XR_260318 MODEL 8744767 protein-coding LOC102006578 olfactory receptor 1Q1-like NW_004955419 5347299 5348225 - 102006578 AGCD01019802;XM_005382525 XP_005382582 MODEL 8889757 protein-coding Smarcd1 SWI/SNF related BAF chromatin remodeling complex subunit D1 ENCODES a protein that exhibits ATP-dependent chromatin remodeler activity (ortholog); chromatin binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to fatty acid (ortholog); chromatin remodeling (ortholog); transcription initiation-coupled chromatin remodeling (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH alopecia (ortholog); Coffin-Siris syndrome 11 (ortholog); familial hyperlipidemia (ortholog); FOUND IN nBAF complex (ortholog); npBAF complex (ortholog); nucleoplasm (ortholog) NW_004955547 659919 673637 + 102012130 AGCD01072171;GBCQ01017115;XM_005411865;XM_005411867;XM_005411869;XM_013508482 XP_005411922;XP_005411924;XP_005411926;XP_013363936 MODEL 8792308 pseudo LOC102005500 sorting nexin-2 pseudogene NW_004955434 22965591 22967140 - 102005500 AGCD01032690 MODEL 8780981 protein-coding Psmg1 proteasome assembly chaperone 1 ENCODES a protein that exhibits molecular adaptor activity (ortholog); proteasome binding (ortholog); INVOLVED IN cerebellar granule cell precursor proliferation (ortholog); chaperone-mediated protein complex assembly (ortholog); proteasome core complex assembly (ortholog); ASSOCIATED WITH ulcerative colitis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955407 37993657 38002986 - 102021520 AGCD01007792;GBDI01180160;XM_005375763;XM_005375764 XP_005375820;XP_005375821 MODEL 9029802 protein-coding Slc13a5 solute carrier family 13 member 5 ENCODES a protein that exhibits citrate transmembrane transporter activity (ortholog); identical protein binding (ortholog); organic acid:sodium symporter activity (ortholog); INVOLVED IN alpha-ketoglutarate transport (ortholog); cellular response to lithium ion (ortholog); citrate transport (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 25 (ortholog); Developmental Disabilities (ortholog); generalized epilepsy (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955467 12181555 12217280 - 102007978 AGCD01051625;GBDF01196108;XM_005399670;XM_013522142;XM_013522144 XP_005399727;XP_013377596;XP_013377598 MODEL 10372034 ncrna LOC106149930 uncharacterized LOC106149930 NW_004955402 5747561 5749079 - 106149930 AGCD01000138;GBDF01196370;XR_001236414 MODEL 8916438 protein-coding Sdr42e1 short chain dehydrogenase/reductase family 42E, member 1 ASSOCIATED WITH acromesomelic dysplasia 4 (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955564 2019135 2042680 + 102025734 AGCD01074252;AGCD01074253;AGCD01074254;AGCD01074255;GBCE01023135;XM_005413243 XP_005413300 MODEL 10368634 ncrna LOC106147088 uncharacterized LOC106147088 NW_004955517 1480877 1499189 + 106147088 AGCD01067598;AGCD01067599;GBDI01195112;XR_001231822 MODEL 8996574 protein-coding Pde8b phosphodiesterase 8B ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); INVOLVED IN behavioral fear response (ortholog); negative regulation of insulin secretion (ortholog); negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH basal ganglia disease (ortholog); congenital adrenal hyperplasia (ortholog); Dysarthria (ortholog) NW_004955425 23512865 23614326 - 102017255 AGCD01025846;AGCD01025847;AGCD01025848;GBBH01076490;GBBH01076491;XM_013514855;XM_013514856 XP_013370309;XP_013370310 MODEL 8901122 protein-coding Tor2a torsin family 2 member A ENCODES a protein that exhibits hormone activity (ortholog); identical protein binding (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); positive regulation of calcium ion transmembrane transport (ortholog); vasopressin secretion (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog); extracellular region (ortholog) NW_004955419 922901 926624 + 102029295 AGCD01019623;GBDF01251618;XM_005382421 XP_005382478 MODEL 9019867 pseudo LOC102010333 U1 small nuclear ribonucleoprotein C pseudogene NW_004955453 8264707 8265255 + 102010333 AGCD01044758;XM_005395715 MODEL 9066614 pseudo LOC102018769 zinc finger CCHC-type and RNA-binding motif-containing protein 1 pseudogene NW_004955439 2361444 2362083 + 102018769 AGCD01035643 MODEL 10068101 ncrna LOC106148186 uncharacterized LOC106148186 NW_004955417 11761571 11773890 - 106148186 AGCD01018141;GBCE01034762;XR_001233397;XR_001233398;XR_001233399 MODEL 9051690 protein-coding LOC102028582 ribonuclease pancreatic NW_004955550 1591378 1593023 - 102028582 AGCD01072582;GBBH01007873;XM_005412073 XP_005412130 MODEL 8789208 pseudo LOC102009581 rRNA-processing protein UTP23 homolog pseudogene NW_004955458 15500020 15501069 + 102009581 AGCD01047897 MODEL 8902797 protein-coding Rims1 regulating synaptic membrane exocytosis 1 ENCODES a protein that exhibits protein kinase binding (ortholog); SH3 domain binding (ortholog); small GTPase binding (ortholog); INVOLVED IN acrosomal vesicle exocytosis (ortholog); calcium ion-regulated exocytosis of neurotransmitter (ortholog); long-term synaptic potentiation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); bipolar disorder (ortholog); FOUND IN extrinsic component of presynaptic active zone membrane (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog) NW_004955488 6999128 7196583 + 102007439 AGCD01059669;AGCD01059670;AGCD01059671;AGCD01059672;AGCD01059673;AGCD01059674;GBBH01112718;XM_013504429;XM_013504430;XM_013504431;XM_013504432;XM_013504433;XM_013504434;XM_013504435;XM_013504436;XM_013504437;XM_013504438;XM_013504439;XM_013504440;XM_013504441;XM_013504442;XM_013504443;XM_013504444;XM_013504445;XM_013504446;XM_013504447 XP_013359883;XP_013359884;XP_013359885;XP_013359886;XP_013359887;XP_013359888;XP_013359889;XP_013359890;XP_013359891;XP_013359892;XP_013359893;XP_013359894;XP_013359895;XP_013359896;XP_013359897;XP_013359898;XP_013359899;XP_013359900;XP_013359901 MODEL 8963721 protein-coding LOC102024449 olfactory receptor 52R1 NW_004955414 20381741 20382694 - 102024449 AGCD01015371;XM_005380472 XP_005380529 MODEL 8892775 pseudo LOC102030369 nucleus accumbens-associated protein 1 pseudogene NW_004955607 126311 127832 - 102030369 AGCD01076976 MODEL 39133364 snrna U4 U4 spliceosomal RNA 8936772 protein-coding Pwp2 PWP2 small subunit processome component INVOLVED IN ribosomal small subunit biogenesis (ortholog); FOUND IN nucleolus (ortholog); small-subunit processome (ortholog) NW_004955407 41256603 41269648 - 102029049 AGCD01007863;GBCE01009676;XM_005375872 XP_005375929 MODEL 8817428 protein-coding LOC102017617 uncharacterized LOC102017617 NW_004955402 9150459 9154214 - 102017617 AGCD01000207;GBDF01245775;XM_005373147 XP_005373204 MODEL 9045232 protein-coding LOC102012716 PRAME family member 23-like NW_004955618 152655 161495 - 102012716 AGCD01077302;AGCD01077303;AGCD01077304;XM_013510148 XP_013365602 MODEL 8848861 ncrna LOC102006956 uncharacterized LOC102006956 NW_004955438 989747 1006079 + 102006956 AGCD01034966;AGCD01034967;AGCD01034968;GBDF01002597;XR_001235135;XR_261908;XR_261909 MODEL 8985961 ncrna LOC102027918 uncharacterized LOC102027918 NW_004955402 2947879 2951770 - 102027918 AGCD01000094;GBDF01236369;XR_259019 MODEL 8773622 protein-coding LOC102019201 olfactory receptor 2D2-like NW_004955537 2630803 2631741 - 102019201 AGCD01070933;XM_005410628 XP_005410685 MODEL 9045802 protein-coding Ret ret proto-oncogene ENCODES a protein that exhibits calcium ion binding (ortholog); protein tyrosine kinase activity (ortholog); transmembrane receptor protein tyrosine kinase activity (ortholog); INVOLVED IN cell surface receptor protein tyrosine kinase signaling pathway (ortholog); cellular response to retinoic acid (ortholog); embryonic epithelial tube formation (ortholog); ASSOCIATED WITH appendicitis (ortholog); Brain Injuries (ortholog); brain ischemia (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); early endosome (ortholog) NW_004955546 1221995 1252147 + 102005303 AGCD01072043;AGCD01072044;GBDF01009147;XM_005411762 XP_005411819 MODEL 8904836 protein-coding Trim33 tripartite motif containing 33 ENCODES a protein that exhibits co-SMAD binding (ortholog); promoter-specific chromatin binding (ortholog); R-SMAD binding (ortholog); INVOLVED IN gene expression (ortholog); negative regulation of BMP signaling pathway (ortholog); protein ubiquitination (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH developmental dysplasia of the hip (ortholog); Developmental Dysplasia of the Hip 4 (ortholog); ovarian cancer (ortholog); FOUND IN nucleus (ortholog) NW_004955435 17631596 17750261 - 102029788 AGCD01033362;AGCD01033363;AGCD01033364;GBDK01141829;XM_013516407 XP_013371861 MODEL 8836186 ncrna LOC102011114 uncharacterized LOC102011114 NW_004955416 28362023 28367569 + 102011114 AGCD01017627;GBCQ01114433;XR_001233378;XR_001233379;XR_260430;XR_260431;XR_260433 MODEL 150537103 snorna SNORA53 small nucleolar RNA, H/ACA box 53 8861526 ncrna LOC102011516 uncharacterized LOC102011516 NW_004955411 10562211 10565308 + 102011516 AGCD01011781;GBDF01307096;XR_259930 MODEL 8705691 ncrna LOC102003728 uncharacterized LOC102003728 NW_004955454 12328311 12330494 + 102003728 AGCD01045409;XR_262791 MODEL 9030327 protein-coding Serpine3 serpin family E member 3 NW_004955431 4694654 4727080 + 102003993 AGCD01030006;AGCD01030007;XM_005387608 XP_005387665 MODEL 8803822 protein-coding Slc14a1 solute carrier family 14 member 1 (Kidd blood group) ENCODES a protein that exhibits urea channel activity (ortholog); urea transmembrane transporter activity (ortholog); water transmembrane transporter activity (ortholog); INVOLVED IN urea transmembrane transport (ortholog); urea transport (ortholog); water transport (ortholog); ASSOCIATED WITH autoimmune hemolytic anemia (ortholog); hemolytic disease of the fetus (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955402 31320897 31343774 + 102024403 AGCD01000785;GBDI01163529;XM_005372859;XM_005372860 XP_005372916;XP_005372917 MODEL 8912328 protein-coding Slc4a8 solute carrier family 4 member 8 ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); chloride transmembrane transporter activity (ortholog); identical protein binding (ortholog); INVOLVED IN basolateral protein secretion (ortholog); bicarbonate transport (ortholog); chloride transmembrane transport (ortholog); ASSOCIATED WITH prediabetes syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); asymmetric synapse (ortholog); axon terminus (ortholog) NW_004955547 1896597 1975285 + 102025945 AGCD01072250;AGCD01072251;GBDF01263263;XM_005415404 XP_005415461 MODEL 8828638 pseudo LOC102027233 breast cancer metastasis-suppressor 1-like protein pseudogene NW_004955543 3414117 3422436 + 102027233 AGCD01071688 MODEL 10316166 protein-coding LOC106148187 translation initiation factor IF-2-like NW_004955403 19506031 19508466 - 106148187 AGCD01002132;GBBH01204528;GBDK01199288;XM_013512708 XP_013368162 MODEL 8824995 protein-coding Plcd3 phospholipase C delta 3 ENCODES a protein that exhibits phosphatidylinositol-4,5-bisphosphate phospholipase C activity (ortholog); INVOLVED IN angiogenesis (ortholog); labyrinthine layer blood vessel development (ortholog); regulation of cell population proliferation (ortholog); PARTICIPATES IN inositol metabolic pathway; FOUND IN cleavage furrow (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955451 17822345 17827848 - 102023864 AGCD01043774;GBBH01230083;GBCE01115432;XM_005394564 XP_005394621 MODEL 8881973 ncrna LOC102010746 uncharacterized LOC102010746 NW_004955446 646029 647588 + 102010746 AGCD01039946;GBDF01235337;XR_262363 MODEL 8898763 protein-coding Rb1cc1 RB1 inducible coiled-coil 1 ENCODES a protein that exhibits protein kinase binding (ortholog); protein-membrane adaptor activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); defense response to virus (ortholog); PARTICIPATES IN autophagy pathway; mTOR signaling pathway; ASSOCIATED WITH breast adenocarcinoma (ortholog); breast cancer (ortholog); Breast Cancer, Familial (ortholog); FOUND IN Atg1/ULK1 kinase complex (ortholog); autophagosome membrane (ortholog); cytoplasm (ortholog) NW_004955454 12201566 12257383 - 102029826 AGCD01045405;AGCD01045406;AGCD01045407;GBDF01043542;XM_013520171 XP_013375625 MODEL 8956805 protein-coding Sntb1 syntrophin beta 1 ENCODES a protein that exhibits PDZ domain binding (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH head and neck squamous cell carcinoma (ortholog); FOUND IN protein-containing complex (ortholog); synapse (ortholog) NW_004955417 25906013 26128134 - 102019501 AGCD01018495;AGCD01018496;AGCD01018497;AGCD01018498;GBDI01120696;XM_013512818 XP_013368272 MODEL 8815333 protein-coding Pax1 paired box 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); CD4-positive, alpha-beta T cell differentiation (ortholog); CD8-positive, alpha-beta T cell differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Goldenhar syndrome (ortholog); Otofaciocervical Syndrome 1 (ortholog) NW_004955415 29413253 29420682 + 102024455 AGCD01016652;GBBH01144111;GBCE01000367;XM_005380955 XP_005381012 MODEL 9034303 protein-coding Ppcdc phosphopantothenoylcysteine decarboxylase ENCODES a protein that exhibits FMN binding (ortholog); identical protein binding (ortholog); phosphopantothenoylcysteine decarboxylase activity (ortholog); INVOLVED IN coenzyme A biosynthetic process (ortholog); PARTICIPATES IN pantothenic acid metabolic pathway; FOUND IN phosphopantothenoylcysteine decarboxylase complex (ortholog) NW_004955450 2971874 2985034 - 102003923 AGCD01042416;GBDF01014837;XM_005393522;XM_005393523;XM_005393524;XM_013518850;XM_013518851;XM_013518852;XM_013518853;XM_013518854;XM_013518855;XR_001235857;XR_262523 XP_005393579;XP_005393580;XP_005393581;XP_013374304;XP_013374305;XP_013374306;XP_013374307;XP_013374308;XP_013374309 MODEL 8893552 pseudo LOC102006579 histone H2A type 1-H-like NW_004955483 1224848 1228126 + 102006579 AGCD01057644 MODEL 8731221 protein-coding LOC102026231 zinc finger protein 426-like NW_004955495 1149827 1164971 + 102026231 AGCD01061675;GBDF01220270;XM_013505050 XP_013360504 MODEL 9038780 protein-coding Rubcn rubicon autophagy regulator ENCODES a protein that exhibits phosphatidylinositol 3-kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of autophagosome maturation (ortholog); negative regulation of autophagy (ortholog); negative regulation of endocytosis (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 15 (ortholog); Developmental Disabilities (ortholog); spinocerebellar ataxia 15 (ortholog); FOUND IN early endosome (ortholog); Golgi apparatus (ortholog); late endosome (ortholog) NW_004955420 12124193 12187154 + 102029749 AGCD01020855;AGCD01020856;AGCD01020857;GBDF01120735;XM_005383093;XM_005383094;XM_005383095 XP_005383150;XP_005383151;XP_005383152 MODEL 8751760 ncrna LOC102012718 uncharacterized LOC102012718 NW_004955403 26534439 26537509 + 102012718 AGCD01002308;GBCB01077504;XR_001233580;XR_259205 MODEL 8764323 protein-coding Emg1 EMG1 N1-specific pseudouridine methyltransferase ENCODES a protein that exhibits identical protein binding (ortholog); rRNA (pseudouridine) methyltransferase activity (ortholog); INVOLVED IN blastocyst development (ortholog); nucleologenesis (ortholog); ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH Bowen-Conradi syndrome (ortholog); genetic disease (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN nucleolus (ortholog); small-subunit processome (ortholog) NW_004955413 4563864 4570809 + 102010240 AGCD01013621;GBDJ01228048;XM_005378851 XP_005378908 MODEL 8811038 protein-coding LOC102005501 chloride channel protein ClC-Ka NW_004955527 2203583 2213969 - 102005501 AGCD01069424;GBCQ01008207;XM_005409849;XM_005409850;XM_013507416 XP_005409906;XP_005409907;XP_013362870 MODEL 8836426 protein-coding LOC102021700 ubiquitin-conjugating enzyme E2 D4-like NW_004955525 2619948 2620976 - 102021700 AGCD01069098;GBDF01225732;XM_005409736 XP_005409793 MODEL 8805897 protein-coding Wdfy1 WD repeat and FYVE domain containing 1 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); INVOLVED IN positive regulation of toll-like receptor 3 signaling pathway (ortholog); positive regulation of toll-like receptor 4 signaling pathway (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); nucleus (ortholog) NW_004955453 10101576 10148205 + 102020198 AGCD01044782;GBDF01044991;XM_005395485 XP_005395542 MODEL 8849313 protein-coding LOC102023431 receptor-type tyrosine-protein phosphatase V-like NW_004955406 38253569 38273082 + 102023431 AGCD01006599;GBDF01088796;XM_005375209;XM_013522347;XM_013522350 XP_005375266;XP_013377801;XP_013377804 MODEL 8788377 protein-coding Pde9a phosphodiesterase 9A ENCODES a protein that exhibits 3',5'-cyclic-GMP phosphodiesterase activity (ortholog); identical protein binding (ortholog); INVOLVED IN cGMP catabolic process (ortholog); cGMP metabolic process (ortholog); negative regulation of neural precursor cell proliferation (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); congestive heart failure (ortholog); Death (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955407 39090718 39165363 - 102009255 AGCD01007821;AGCD01007822;GBBH01118078;XM_005375809;XM_005375810;XM_013505072;XM_013505077 XP_005375866;XP_005375867;XP_013360526;XP_013360531 MODEL 8709801 protein-coding LOC102008469 protein FAM209B NW_004955445 2725178 2727984 - 102008469 AGCD01039364;GBDJ01263846;XM_005392264 XP_005392321 MODEL 9037904 protein-coding LOC102024450 equatorin-like NW_004955472 7589444 7603493 + 102024450 AGCD01053624;GBDF01045098;XM_005401147;XM_013522932;XM_013522933 XP_005401204;XP_013378386;XP_013378387 MODEL 8834168 protein-coding LOC102025859 uncharacterized LOC102025859 NW_004955584 509190 561048 - 102025859 AGCD01075944;AGCD01075945;AGCD01075946;AGCD01075947;AGCD01075948;XM_013509845 XP_013365299 MODEL 8986999 gene LOC102015697 T-cell receptor alpha chain C region-like NW_004955409 37699401 38540341 - 102015697 AGCD01010533;AGCD01010534;AGCD01010535;AGCD01010536;AGCD01010537;AGCD01010538;AGCD01010539;AGCD01010540;AGCD01010541;AGCD01010542;AGCD01010543;AGCD01010544;AGCD01010545;AGCD01010546;AGCD01010547;AGCD01010548;AGCD01010549;AGCD01010550;AGCD01010551;AGCD01010552;AGCD01010553;AGCD01010554;AGCD01010555;AGCD01010556;AGCD01010557;AGCD01010558;AGCD01010559;AGCD01010560;XM_005377133 MODEL 39133370 snrna U4 U4 spliceosomal RNA 8974844 ncrna LOC102017621 uncharacterized LOC102017621 NW_004955451 11658116 11663081 + 102017621 AGCD01043362;GBCE01179796;XR_001235940;XR_262592 MODEL 8945020 protein-coding Prap1 proline rich acidic protein 1 ENCODES a protein that exhibits triglyceride binding (ortholog); INVOLVED IN cellular response to X-ray (ortholog); deactivation of mitotic spindle assembly checkpoint (ortholog); DNA damage response (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular region (ortholog) NW_004955477 10982530 11002747 + 102003965 AGCD01055712;AGCD01055713;GBDF01083668;XM_005402061;XM_005402062;XM_013503054;XR_001230825;XR_001230826 XP_005402118;XP_005402119;XP_013358508 MODEL 8866009 protein-coding Slc14a2 solute carrier family 14 member 2 ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); urea transmembrane transporter activity (ortholog); INVOLVED IN urea transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955402 30877808 31283983 + 102023214 AGCD01000781;AGCD01000782;GBCQ01010210;XM_005372853;XM_005372854;XM_005372855;XM_005372856;XM_005372857;XM_013510367;XM_013510368;XM_013510374 XP_005372910;XP_005372911;XP_005372912;XP_005372913;XP_005372914;XP_013365821;XP_013365822;XP_013365828 MODEL 8869129 protein-coding Pwwp2a PWWP domain containing 2A ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); histone H3K36me3 reader activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); positive regulation of transcription elongation by RNA polymerase II (ortholog); regulation of transcriptional start site selection at RNA polymerase II promoter (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955408 14007982 14051149 - 102023334 AGCD01008379;AGCD01008380;GBCE01142938;XM_005376254;XM_005376255;XM_013508900;XM_013508906;XM_013508913;XM_013508924;XR_001232337;XR_001232338;XR_001232339 XP_005376311;XP_005376312;XP_013364354;XP_013364360;XP_013364367;XP_013364378 MODEL 8984178 protein-coding LOC102025863 keratin-associated protein 16-1-like NW_004955451 15500701 15514727 - 102025863 AGCD01043611;AGCD01043612;XM_013519126 XP_013374580 MODEL 10347517 protein-coding LOC106147089 receptor-type tyrosine-protein phosphatase gamma-like NW_004955517 3563925 3619511 - 106147089 AGCD01067659;AGCD01067660;AGCD01067661;AGCD01067662;AGCD01067663;GBDF01090397;XM_013506947 XP_013362401 MODEL 9027228 ncrna LOC102010334 uncharacterized LOC102010334 NW_004955406 19328963 19363689 - 102010334 AGCD01006077;GBDF01119607;XR_001236563;XR_001236565;XR_001236566;XR_001236567;XR_001236568;XR_001236569 MODEL 8914873 protein-coding Sdr42e2 short chain dehydrogenase/reductase family 42E, member 2 NW_004955493 834582 849058 + 102012210 AGCD01060866;GBDF01294445;XM_005405068 XP_005405125 MODEL 8827041 protein-coding Rac2 Rac family small GTPase 2 ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); protein kinase regulator activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); bone resorption (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Chronic Periodontitis (ortholog); Disease Progression (ortholog); FOUND IN actin filament (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955413 23697504 23710668 - 102029610 AGCD01014333;GBCB01050846;XM_005379195;XM_005379196 XP_005379252;XP_005379253 MODEL 9021098 ncrna LOC102028928 uncharacterized LOC102028928 NW_004955405 30705175 30709797 - 102028928 AGCD01005276;GBDF01145867;XR_259416 MODEL 8865628 protein-coding LOC102011120 filamin-interacting protein FAM101A ENCODES a protein that exhibits filamin binding (ortholog); INVOLVED IN actin filament bundle organization (ortholog); negative regulation of bone mineralization involved in bone maturation (ortholog); negative regulation of chondrocyte development (ortholog); FOUND IN actin filament bundle (ortholog) NW_004955482 5034075 5044162 - 102011120 AGCD01057318;GBCE01016386;XM_005403010;XM_005403011;XM_013503639 XP_005403067;XP_005403068;XP_013359093 MODEL 8707069 pseudo LOC102030370 olfactory receptor 4F3/4F16/4F29-like NW_004955614 202113 222828 + 102030370 AGCD01077235;AGCD01077236 MODEL 8785232 protein-coding Rims2 regulating synaptic membrane exocytosis 2 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein-containing complex binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); calcium ion-regulated exocytosis of neurotransmitter (ortholog); calcium-ion regulated exocytosis (ortholog); ASSOCIATED WITH CONE-ROD SYNAPTIC DISORDER SYNDROME, CONGENITAL NONPROGRESSIVE (ortholog); Congenital Stationary Night Blindness 2B (ortholog); lung small cell carcinoma (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); inhibitory synapse (ortholog) NW_004955417 27748090 28131431 + 102021763 AGCD01018566;AGCD01018567;AGCD01018568;AGCD01018569;AGCD01018570;AGCD01018571;AGCD01018572;GBDF01158726;XM_013512858;XM_013512859;XM_013512860;XM_013512861;XM_013512862;XM_013512863 XP_013368312;XP_013368313;XP_013368314;XP_013368315;XP_013368316;XP_013368317 MODEL 10164904 ncrna LOC106148188 uncharacterized LOC106148188 NW_004955417 27126795 27134199 + 106148188 AGCD01018533;GBDF01240714;XR_001233400 MODEL 9040756 protein-coding LOC102027234 uncharacterized LOC102027234 NW_004955439 17547905 17567699 + 102027234 AGCD01036041;GBDF01054417;XM_013517306 XP_013372760 MODEL 9065422 protein-coding Lhx9 LIM homeobox 9 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell population proliferation (ortholog); female gonad development (ortholog); gonad morphogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Pituitary Stalk Interruption Syndrome (ortholog) NW_004955406 34341972 34363351 + 102026828 AGCD01006501;GBDJ01206517;XM_005375125;XM_005375126;XM_005375128;XM_005375129;XM_005375131;XM_013521911;XM_013521921;XM_013521925 XP_005375182;XP_005375183;XP_005375185;XP_005375186;XP_005375188;XP_013377365;XP_013377375;XP_013377379 MODEL 9012684 protein-coding Thoc2 THO complex 2 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN blastocyst development (ortholog); cell morphogenesis (ortholog); generation of neurons (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; ASSOCIATED WITH arthrogryposis multiplex congenita-7, X-linked (ortholog); genetic disease (ortholog); immunodeficiency 127 (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955473 11029860 11143493 + 102018825 AGCD01054129;AGCD01054130;GBCE01187645;XM_005401279;XM_005401282;XM_005401283;XM_005401284;XM_013523054;XM_013523055;XM_013523056;XM_013523057;XM_013523058 XP_005401336;XP_005401339;XP_005401340;XP_005401341;XP_013378508;XP_013378509;XP_013378510;XP_013378511;XP_013378512 MODEL 9008644 ncrna LOC102006962 uncharacterized LOC102006962 NW_004955442 18374768 18409901 + 102006962 AGCD01038005;AGCD01038006;GBCE01069332;XR_262164 MODEL 8729020 protein-coding Serpinf1 serpin family F member 1 INVOLVED IN cellular response to cobalt ion (ortholog); cellular response to dexamethasone stimulus (ortholog); cellular response to glucose stimulus (ortholog); ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); adenoid cystic carcinoma (ortholog); Albuminuria (ortholog); FOUND IN axon (ortholog); axon hillock (ortholog); basement membrane (ortholog) NW_004955481 1414930 1426436 - 102015719 AGCD01056832;GBDK01110727;XM_005402604;XM_005402605 XP_005402661;XP_005402662 MODEL 8839483 protein-coding Prps2 phosphoribosyl pyrophosphate synthetase 2 ENCODES a protein that exhibits ADP binding (ortholog); AMP binding (ortholog); ATP binding (ortholog); INVOLVED IN 5-phosphoribose 1-diphosphate biosynthetic process (ortholog); AMP biosynthetic process (ortholog); animal organ regeneration (ortholog); PARTICIPATES IN de novo purine biosynthetic pathway; FOUND IN cytosol (ortholog); protein-containing complex (ortholog); ribose phosphate diphosphokinase complex (ortholog) NW_004955544 480587 512019 - 102030240 AGCD01071705;AGCD01071706;GBCE01044643;XM_005411376 XP_005411433 MODEL 8850776 protein-coding LOC102010748 transmembrane protease serine 11G-like NW_004955447 4856552 4890901 + 102010748 AGCD01040735;GBDF01305458;XM_005392830 XP_005392887 MODEL 8931849 protein-coding Sntb2 syntrophin beta 2 PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; FOUND IN cytoplasm (ortholog); plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955484 7391076 7489357 - 102005809 AGCD01058330;AGCD01058331;AGCD01058332;AGCD01058333;GBBH01076692;XM_013503934 XP_013359388 MODEL 8790255 protein-coding Tor3a torsin family 3 member A ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog) NW_004955406 18408095 18422098 + 102028377 AGCD01006034;AGCD01006035;GBCB01056537;XM_005374944;XM_013521135 XP_005375001;XP_013376589 MODEL 9024948 protein-coding Ppcs phosphopantothenoylcysteine synthetase ENCODES a protein that exhibits identical protein binding (ortholog); phosphopantothenate--cysteine ligase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN acetyl-CoA biosynthetic process (ortholog); coenzyme A biosynthetic process (ortholog); heart process (ortholog); PARTICIPATES IN pantothenic acid metabolic pathway; ASSOCIATED WITH dilated cardiomyopathy 2C (ortholog); FOUND IN catalytic complex (ortholog) NW_004955537 2080865 2084199 + 102013336 AGCD01070917;GBDK01187161;XM_005410610;XM_005410611;XM_013507766 XP_005410667;XP_005410668;XP_013363220 MODEL 8965931 pseudo LOC102009587 39S ribosomal protein L30, mitochondrial pseudogene NW_004955464 11215198 11215862 + 102009587 AGCD01050139 MODEL 8852981 protein-coding LOC102018771 ETS translocation variant 3 NW_004955545 3146221 3160533 - 102018771 AGCD01071933;GBDK01237418;XM_005411739;XM_005411741 XP_005411796;XP_005411798 MODEL 9025758 protein-coding Rubcnl rubicon like autophagy enhancer ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagosome-endosome fusion (ortholog); autophagosome-lysosome fusion (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN autophagosome membrane (ortholog) NW_004955431 140999 206570 - 102010828 AGCD01029856;AGCD01029857;AGCD01029858;AGCD01029859;GBDJ01387854;XM_005387542;XM_005387544;XM_005387545;XM_013515872;XM_013515873;XM_013515874;XM_013515875 XP_005387599;XP_005387601;XP_005387602;XP_013371326;XP_013371327;XP_013371328;XP_013371329 MODEL 616940646 snorna SNORA55 small nucleolar RNA, H/ACA box 55 8836033 protein-coding Pax2 paired box 2 ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN brain morphogenesis (ortholog); branching involved in ureteric bud morphogenesis (ortholog); camera-type eye development (ortholog); ASSOCIATED WITH chronic kidney disease (ortholog); coloboma (ortholog); congenital anomalies of kidney and urinary tract (ortholog); FOUND IN centriolar satellite (ortholog); microtubule organizing center (ortholog); nucleoplasm (ortholog) NW_004955485 9351913 9430607 - 102007128 AGCD01058758;AGCD01058759;AGCD01058760;AGCD01058761;AGCD01058762;AGCD01058763;GBCQ01034440;GBCQ01034447;XM_013504124;XM_013504125 XP_013359578;XP_013359579 MODEL 9018905 protein-coding Brox BRO1 domain and CAAX motif containing INVOLVED IN mitotic nuclear membrane reassembly (ortholog); FOUND IN nuclear envelope (ortholog) NW_004955520 1797657 1819359 - 102017050 AGCD01068062;GBCQ01127688;XM_005409252;XM_005409253;XM_013507023;XM_013507025;XM_013507026 XP_005409309;XP_005409310;XP_013362477;XP_013362479;XP_013362480 MODEL 9003734 ncrna LOC102003731 uncharacterized LOC102003731 NW_004955407 34830164 34933219 - 102003731 AGCD01007727;AGCD01007728;GBDF01191929;XR_259609 MODEL 8708859 protein-coding Emid1 EMI domain containing 1 FOUND IN endoplasmic reticulum (ortholog); extracellular matrix (ortholog); Golgi apparatus (ortholog) NW_004955455 3514350 3564584 + 102027713 AGCD01045632;AGCD01045633;AGCD01045634;AGCD01045635;AGCD01045636;GBBH01172676;GBDI01170247;XM_005396178;XM_005396179;XM_005396180;XM_005396181;XM_005396182;XM_005396188 XP_005396235;XP_005396236;XP_005396237;XP_005396238;XP_005396239;XP_005396245 MODEL 8942523 pseudo LOC102027924 cellular nucleic acid-binding protein pseudogene NW_004955591 719 1823 - 102027924 AGCD01076228;XM_005414593 MODEL 8745432 protein-coding Slc4a9 solute carrier family 4 member 9 ENCODES a protein that exhibits chloride:bicarbonate antiporter activity (ortholog); sodium,bicarbonate:chloride antiporter activity (ortholog); sodium:bicarbonate symporter activity (ortholog); INVOLVED IN monoatomic anion transport (ortholog); saliva secretion (ortholog); sodium ion transmembrane transport (ortholog); FOUND IN apical part of cell (ortholog); basolateral plasma membrane (ortholog); membrane (ortholog) NW_004955418 273383 288675 - 102005141 AGCD01018671;GBBH01001332;XM_013512899;XM_013512900;XM_013512901;XM_013512902;XM_013512903;XR_001233497 XP_013368353;XP_013368354;XP_013368355;XP_013368356;XP_013368357 MODEL 8953515 protein-coding LOC102008473 zinc finger protein OZF-like NW_004955569 1649162 1664829 + 102008473 AGCD01074673;AGCD01074674;GBDJ01263726;XM_013509377 XP_013364831 MODEL 8830807 ncrna LOC102019204 uncharacterized LOC102019204 NW_004955439 6299763 6305652 - 102019204 AGCD01035750;GBDF01188259;XR_261973 MODEL 9027568 pseudo LOC102024456 serine/threonine-protein kinase Kist pseudogene NW_004955475 5028388 5029292 + 102024456 AGCD01054900 MODEL 8973032 protein-coding Psmg2 proteasome assembly chaperone 2 ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN chaperone-mediated protein complex assembly (ortholog); mitotic spindle assembly checkpoint signaling (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH proteosome-associated autoinflammatory syndrome 4 (ortholog); FOUND IN nucleus (ortholog); protein folding chaperone complex (ortholog) NW_004955402 857228 870940 - 102011162 AGCD01000035;AGCD01000036;GBBH01004200;GBCQ01042453;XM_013513426;XM_013513470 XP_013368880;XP_013368924 MODEL 8884434 protein-coding Retn resistin INVOLVED IN fat cell differentiation (ortholog); negative regulation of feeding behavior (ortholog); positive regulation of collagen metabolic process (ortholog); ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Albuminuria (ortholog); chronic kidney disease (ortholog); FOUND IN extracellular region (ortholog) NW_004955563 1607814 1609273 - 102028141 AGCD01074153;GBDK01016678;XM_005413172 XP_005413229 MODEL 39131465 protein-coding RBAK RB associated KRAB zinc finger 8860274 protein-coding LOC102017623 uncharacterized LOC102017623 NW_004955451 17616484 17619800 + 102017623 AGCD01043763;XM_005394540 XP_005394597 MODEL 8794490 pseudo LOC102027926 60S ribosomal protein L32 pseudogene NW_004955403 589643 590526 + 102027926 AGCD01001698 MODEL 9059924 protein-coding LOC102005505 homeobox protein ESX1-like NW_004955534 3330 9799 + 102005505 AGCD01070431;GBDF01222868;XM_005410423 XP_005410480 MODEL 8776633 protein-coding Prc1 protein regulator of cytokinesis 1 ENCODES a protein that exhibits identical protein binding (ortholog); kinesin binding (ortholog); protein kinase binding (ortholog); INVOLVED IN positive regulation of cell population proliferation (ortholog); regulation of cytokinesis (ortholog); ASSOCIATED WITH Breast Cancer, Familial (ortholog); Breast Neoplasms (ortholog); hepatocellular carcinoma (ortholog); FOUND IN chromosome (ortholog); contractile ring (ortholog); microtubule cytoskeleton (ortholog) NW_004955416 15023620 15045958 - 102018828 AGCD01017296;AGCD01017297;GBDJ01422852;XM_005381518;XM_005381519;XM_005381521;XM_013512475 XP_005381575;XP_005381576;XP_005381578;XP_013367929 MODEL 8730919 protein-coding Slc15a1 solute carrier family 15 member 1 ENCODES a protein that exhibits channel inhibitor activity (ortholog); dipeptide transmembrane transporter activity (ortholog); peptide:proton symporter activity (ortholog); INVOLVED IN dipeptide import across plasma membrane (ortholog); metanephric proximal tubule development (ortholog); negative regulation of amino acid transport (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); membrane (ortholog) NW_004955404 11799370 11856854 + 102014734 AGCD01003446;GBDF01119603;XM_005374072 XP_005374129 MODEL 8886449 protein-coding LOC102011519 zinc finger protein with KRAB and SCAN domains 3 NW_004955465 13688307 13696499 + 102011519 AGCD01050618;GBCB01076570;XM_005398966 XP_005399023 MODEL 8763602 pseudo LOC102010338 uncharacterized protein C3orf38 homolog pseudogene NW_004955456 8222073 8223194 - 102010338 AGCD01046462 MODEL 9067827 protein-coding Prpsap1 phosphoribosyl pyrophosphate synthetase associated protein 1 ENCODES a protein that exhibits enzyme regulator activity (ortholog); identical protein binding (ortholog); kinase binding (ortholog); INVOLVED IN negative regulation of kinase activity (ortholog); FOUND IN protein-containing complex (ortholog); ribose phosphate diphosphokinase complex (ortholog) NW_004955506 5951210 5987658 + 102026134 AGCD01065394;AGCD01065395;AGCD01065396;GBDF01001593;XM_005407435 XP_005407492 MODEL 8875020 ncrna LOC102021702 uncharacterized LOC102021702 NW_004955531 3528962 3534395 + 102021702 AGCD01070075;GBDF01022393;XR_264714 MODEL 8855709 protein-coding LOC102023438 olfactory receptor 6C2-like NW_004955458 2992715 2993662 + 102023438 AGCD01047264;XM_005397506 XP_005397563 MODEL 8893865 protein-coding Sdr9c7 short chain dehydrogenase/reductase family 9C member 7 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); ASSOCIATED WITH autosomal recessive congenital ichthyosis (ortholog); autosomal recessive congenital ichthyosis 13 (ortholog); genetic disease (ortholog) NW_004955458 4538113 4551586 - 102015928 AGCD01047418;GBCC01015389;XM_005397333 XP_005397390 MODEL 8825216 protein-coding Wdfy2 WD repeat and FYVE domain containing 2 INVOLVED IN positive regulation of fat cell differentiation (ortholog); positive regulation of protein phosphorylation (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); endosome (ortholog) NW_004955431 4809405 5086647 + 102030224 AGCD01030011;AGCD01030012;AGCD01030013;AGCD01030014;GBDF01161721;XM_005387605;XM_005387606;XM_005387607;XM_013515761;XM_013515762;XM_013515763;XR_261449 XP_005387662;XP_005387663;XP_005387664;XP_013371215;XP_013371216;XP_013371217 MODEL 10146797 ncrna LOC106149931 uncharacterized LOC106149931 NW_004955457 7882946 7885290 + 106149931 AGCD01046891;XR_001236413 MODEL 8894848 protein-coding Smarcd2 SWI/SNF related BAF chromatin remodeling complex subunit D2 ENCODES a protein that exhibits ATP-dependent chromatin remodeler activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH genetic disease (ortholog); myeloid leukemia (ortholog); neutropenia (ortholog); FOUND IN nucleoplasm (ortholog); SWI/SNF complex (ortholog) NW_004955478 7984736 7996843 + 102019912 AGCD01056004;AGCD01056005;GBBH01065427;GBDF01128362;XM_013503158 XP_013358612 MODEL 8826665 pseudo LOC102015698 ezrin pseudogene NW_004955460 13608269 13609137 - 102015698 AGCD01048706 MODEL 8724526 protein-coding Rims3 regulating synaptic membrane exocytosis 3 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN calcium-ion regulated exocytosis (ortholog); regulation of membrane potential (ortholog); regulation of synapse organization (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic cytosol (ortholog) NW_004955537 483717 522053 - 102003802 AGCD01070866;GBDF01220201;XM_005410577;XM_005410578;XM_005410579 XP_005410634;XP_005410635;XP_005410636 MODEL 8738742 protein-coding LOC102026233 melanoma-associated antigen 8-like NW_004955498 4377745 4382464 + 102026233 AGCD01062996;GBDF01162543;XM_005406411 XP_005406468 MODEL 8920420 ncrna LOC102012719 uncharacterized LOC102012719 NW_004955403 40191140 40192388 - 102012719 AGCD01002668;AGCD01002669;GBDF01211863;XR_259232 MODEL 8752802 protein-coding Trim35 tripartite motif containing 35 INVOLVED IN antiviral innate immune response (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of mitotic cell cycle (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955403 49821150 49841634 - 102003612 AGCD01002951;GBDK01146352;XM_005373737 XP_005373794 MODEL 8934392 pseudo LOC102028584 mitochondrial sodium/hydrogen exchanger 9B2-like NW_004955552 2443242 2467732 + 102028584 AGCD01072815;AGCD01072816 MODEL 8852140 pseudo LOC102025870 selenide, water dikinase 1-like NW_004955454 3602847 3604239 - 102025870 AGCD01045094 MODEL 9012636 protein-coding Serpinf2 serpin family F member 2 ENCODES a protein that exhibits endopeptidase inhibitor activity (ortholog); protease binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN blood vessel morphogenesis (ortholog); collagen fibril organization (ortholog); maintenance of blood vessel diameter homeostasis by renin-angiotensin (ortholog); PARTICIPATES IN fibrinolysis pathway; ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); alpha-2-plasmin inhibitor deficiency (ortholog); coronary artery disease (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog); fibrinogen complex (ortholog) NW_004955481 1441262 1449078 - 102016267 AGCD01056832;GBCQ01033980;XM_005402606;XM_005402607 XP_005402663;XP_005402664 MODEL 8845126 protein-coding Rac3 Rac family small GTPase 3 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); GTPase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cerebral cortex GABAergic interneuron development (ortholog); homeostasis of number of cells within a tissue (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); basal cell carcinoma (ortholog); genetic disease (ortholog); FOUND IN cell periphery (ortholog); cytoplasm (ortholog); endomembrane system (ortholog) NW_004955506 1139098 1142443 - 102018849 AGCD01065246;AGCD01065247;GBBH01089257;XM_005407227 XP_005407284 MODEL 9062235 protein-coding Prcc proline rich mitotic checkpoint control factor INVOLVED IN regulation of cell cycle (ortholog); ASSOCIATED WITH papillary renal cell carcinoma (ortholog); renal cell carcinoma (ortholog); Renal Cell Carcinoma 1 (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog) NW_004955545 2846116 2878247 + 102009653 AGCD01071925;AGCD01071926;AGCD01071927;GBBH01141585;XM_005411704;XM_013508208;XM_013508209 XP_005411761;XP_013363662;XP_013363663 MODEL 8938138 protein-coding LOC102009589 olfactory receptor 8B12-like NW_004955412 25555457 25557190 - 102009589 AGCD01013160;XM_005378425 XP_005378482 MODEL 9026785 protein-coding Pdf peptide deformylase, mitochondrial ENCODES a protein that exhibits peptide deformylase activity (ortholog); INVOLVED IN peptidyl-methionine modification (ortholog); positive regulation of cell population proliferation (ortholog); post-translational protein modification (ortholog); FOUND IN mitochondrion (ortholog) NW_004955484 7363861 7366159 + 102005147 AGCD01058329;GBCQ01174818;GBDF01249467;XM_013503933 XP_013359387 MODEL 8825329 protein-coding Rufy1 RUN and FYVE domain containing 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); SH2 domain binding (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); endosomal vesicle fusion (ortholog); protein transport (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); early endosome membrane (ortholog) NW_004955408 946842 991717 - 102005110 AGCD01007944;AGCD01007945;GBCQ01003838;GBDJ01073789;XM_013507916 XP_013363370 MODEL 39133371 snrna U4 U4 spliceosomal RNA 8897015 protein-coding LOC102003733 E3 ubiquitin-protein ligase TRIM50 NW_004955456 14320894 14328341 + 102003733 AGCD01046639;GBDF01267146;XM_005396793;XM_005396795;XM_013520599 XP_005396850;XP_005396852;XP_013376053 MODEL 9065593 pseudo LOC102006580 olfactory receptor 13C4-like NW_004955419 21896616 21897652 + 102006580 AGCD01020289 MODEL 8927178 protein-coding Lias lipoic acid synthetase ENCODES a protein that exhibits lipoate synthase activity (ortholog); INVOLVED IN inflammatory response (ortholog); lipoate biosynthetic process (ortholog); neural tube closure (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hyperglycinemia, Lactic Acidosis, and Seizures (ortholog); pneumonia (ortholog); FOUND IN mitochondrion (ortholog) NW_004955443 7889274 7907560 - 102027352 AGCD01038301;GBCQ01040238;XM_005391982;XM_005391983;XM_005391985 XP_005392039;XP_005392040;XP_005392042 MODEL 10221485 ncrna LOC106149932 uncharacterized LOC106149932 NW_004955458 15456971 15460710 - 106149932 AGCD01047892;GBDI01106016;XR_001236428 MODEL 9060687 protein-coding Thoc3 THO complex 3 INVOLVED IN mRNA export from nucleus (ortholog); FOUND IN chromosome, telomeric region (ortholog); nucleoplasm (ortholog); THO complex part of transcription export complex (ortholog) NW_004955408 28467540 28480613 - 102008381 AGCD01008713;GBDK01394321;XM_005376367 XP_005376424 MODEL 8886346 ncrna LOC102008474 uncharacterized LOC102008474 NW_004955446 117396 131699 - 102008474 AGCD01039928;AGCD01039929;XR_262359 MODEL 8874398 protein-coding LOC102006963 sialic acid-binding Ig-like lectin 14 NW_004955558 1289644 1293742 - 102006963 AGCD01073431;GBDK01013795;XM_005412746 XP_005412803 MODEL 9012176 protein-coding Pwwp2b PWWP domain containing 2B ENCODES a protein that exhibits NuRD complex binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); positive regulation of transcription elongation by RNA polymerase II (ortholog); regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955477 10017449 10039691 + 102025789 AGCD01055689;GBDK01282478;XM_005402045;XM_005402046;XM_013503080 XP_005402102;XP_005402103;XP_013358534 MODEL 8731640 protein-coding Psmg3 proteasome assembly chaperone 3 ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN chaperone-mediated protein complex assembly (ortholog); FOUND IN protein folding chaperone complex (ortholog); protein-containing complex (ortholog) NW_004955460 9186205 9187942 - 102020889 AGCD01048541;GBDF01159629;XM_005397814;XM_013521205;XM_013521206 XP_005397871;XP_013376659;XP_013376660 MODEL 8877767 ncrna LOC102005511 uncharacterized LOC102005511 NW_004955545 2705974 2709122 - 102005511 AGCD01071919;GBDI01034537;XR_001232179;XR_264880 MODEL 8831877 ncrna LOC102027929 uncharacterized LOC102027929 NW_004955403 18419192 18421096 + 102027929 AGCD01002099;GBDF01308220;XR_259183 MODEL 8724376 protein-coding LOC102026235 chromosome unknown open reading frame, human C12orf54 FOUND IN cytosol (ortholog); intermediate filament cytoskeleton (ortholog) NW_004955500 7358057 7376070 + 102026235 AGCD01063916;AGCD01063917;GBDF01008304;XM_013505649;XM_013505650;XM_013505651 XP_013361103;XP_013361104;XP_013361105 MODEL 8744770 protein-coding Plcd4 phospholipase C delta 4 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); phosphatidylinositol phospholipase C activity (ortholog); INVOLVED IN acrosome reaction (ortholog); small GTPase-mediated signal transduction (ortholog); ASSOCIATED WITH cerebrotendinous xanthomatosis (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog) NW_004955453 14775119 14812872 - 102006870 AGCD01044873;AGCD01044874;GBDK01398186;XM_013519913;XM_013519914;XM_013519915;XM_013519916;XM_013519917;XM_013519918;XM_013519920;XM_013519921;XM_013519922;XM_013519923;XM_013519924;XM_013519925 XP_013375367;XP_013375368;XP_013375369;XP_013375370;XP_013375371;XP_013375372;XP_013375374;XP_013375375;XP_013375376;XP_013375377;XP_013375378;XP_013375379 MODEL 9026560 protein-coding LOC102018772 keratin, type II cytoskeletal 6C-like NW_004955547 2822399 2871054 - 102018772 AGCD01072294;AGCD01072295;AGCD01072296;AGCD01072297;AGCD01072298;AGCD01072299;GBDI01355999;XM_013508446 XP_013363900 MODEL 8866144 pseudo LOC102028933 60S acidic ribosomal protein P0 pseudogene NW_004955453 7420672 7421817 - 102028933 AGCD01044745 MODEL 8783102 protein-coding Pax3 paired box 3 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); HMG box domain binding (ortholog); INVOLVED IN cell migration (ortholog); cell population proliferation (ortholog); developmental pigmentation (ortholog); ASSOCIATED WITH alveolar rhabdomyosarcoma (ortholog); brain stem glioma (ortholog); congenital diaphragmatic hernia (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955453 11463407 11558001 + 102024873 AGCD01044808;AGCD01044809;AGCD01044810;AGCD01044811;GBBH01144118;XM_005395499;XM_005395500;XM_005395501 XP_005395556;XP_005395557;XP_005395558 MODEL 8787773 ncrna LOC102010339 uncharacterized LOC102010339 NW_004955408 5326384 5328418 + 102010339 AGCD01008132;GBDF01177225;XR_259661 MODEL 8981091 protein-coding Emilin1 elastin microfibril interfacer 1 ENCODES a protein that exhibits extracellular matrix constituent conferring elasticity (ortholog); identical protein binding (ortholog); integrin binding involved in cell-matrix adhesion (ortholog); INVOLVED IN aortic valve morphogenesis (ortholog); cell adhesion mediated by integrin (ortholog); cell migration (ortholog); ASSOCIATED WITH arterial tortuosity syndrome (ortholog); ARTERIAL TORTUOSITY-BONE FRAGILITY SYNDROME (ortholog); autosomal dominant distal hereditary motor neuronopathy 10 (ortholog); FOUND IN EMILIN complex (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955469 9049666 9057692 + 102019051 AGCD01052488;GBCE01031448;XM_005400450 XP_005400507 MODEL 10240234 ncrna LOC106148189 uncharacterized LOC106148189 NW_004955417 13194531 13198671 + 106148189 AGCD01018173;GBDF01260845;XR_001233403 MODEL 9023358 protein-coding Slc15a2 solute carrier family 15 member 2 ENCODES a protein that exhibits dipeptide transmembrane transporter activity (ortholog); high-affinity oligopeptide transmembrane transporter activity (ortholog); peptide:proton symporter activity (ortholog); INVOLVED IN antibacterial innate immune response (ortholog); dipeptide import across plasma membrane (ortholog); dipeptide transport (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); melanoma (ortholog); FOUND IN apical plasma membrane (ortholog); membrane (ortholog); phagocytic vesicle membrane (ortholog) NW_004955427 21221778 21255725 + 102005279 AGCD01027436;AGCD01027437;AGCD01027438;AGCD01027439;GBCE01001662;XM_005386496;XM_013515099;XM_013515100 XP_005386553;XP_013370553;XP_013370554 MODEL 8814551 ncrna LOC102019205 uncharacterized LOC102019205 NW_004955441 14672459 14678221 + 102019205 AGCD01037214;GBDF01176341;XR_262080 MODEL 8927793 protein-coding Slc50a1 solute carrier family 50 member 1 ENCODES a protein that exhibits glucoside transmembrane transporter activity (ortholog); FOUND IN endomembrane system (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955545 1617725 1620804 + 102026355 AGCD01071863;GBCQ01141801;XM_005411573;XM_005411574;XM_005411575;XM_013508366;XM_013508367 XP_005411630;XP_005411631;XP_005411632;XP_013363820;XP_013363821 MODEL 8777237 protein-coding Prcd photoreceptor disc component ENCODES a protein that exhibits opsin binding (ortholog); INVOLVED IN detection of light stimulus involved in visual perception (ortholog); microglial cell migration (ortholog); neural retina development (ortholog); ASSOCIATED WITH retinitis pigmentosa 36 (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); extracellular region (ortholog) NW_004955506 5751963 5764767 - 102022411 AGCD01065386;GBDF01214040;XM_005407426;XM_013506079;XM_013506080 XP_005407483;XP_013361533;XP_013361534 MODEL 10336146 ncrna LOC106147090 uncharacterized LOC106147090 NW_004955517 3738386 3760814 + 106147090 AGCD01067676;AGCD01067677;AGCD01067678;AGCD01067679;AGCD01067680;GBDF01155331;XR_001231825 MODEL 8806117 protein-coding LOC102024459 arpin NW_004955416 15340070 15399017 + 102024459 AGCD01017323;AGCD01017324;AGCD01017325;AGCD01017326;GBDF01308168;XM_005381538 XP_005381595 MODEL 39131379 protein-coding SNTB2 syntrophin beta 2 8808123 protein-coding LOC102010752 olfactory receptor 10V1-like NW_004955580 1278611 1279549 + 102010752 AGCD01075652;GBBH01028735;XM_005414226 XP_005414283 MODEL 8956721 pseudo LOC102017625 uncharacterized protein C11orf57 pseudogene NW_004955405 9393595 9394462 - 102017625 AGCD01004772 MODEL 8919326 protein-coding Wdfy3 WD repeat and FYVE domain containing 3 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity (ortholog); INVOLVED IN aggrephagy (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 1 (ortholog); esophageal atresia/tracheoesophageal fistula (ortholog); FOUND IN Atg12-Atg5-Atg16 complex (ortholog); autophagosome (ortholog); autophagosome membrane (ortholog) NW_004955474 4764902 5045421 + 102025904 AGCD01054386;AGCD01054387;AGCD01054388;AGCD01054389;AGCD01054390;AGCD01054391;AGCD01054392;GBDK01190489;XM_005401374;XM_013502725;XM_013502726;XM_013502727;XM_013502728;XM_013502729;XM_013502730 XP_005401431;XP_013358179;XP_013358180;XP_013358181;XP_013358182;XP_013358183;XP_013358184 MODEL 626189143 snorna SNORA57 small nucleolar RNA, H/ACA box 57 8802893 protein-coding Ppdpf pancreatic progenitor cell differentiation and proliferation factor INVOLVED IN liver development (ortholog); TOR signaling (ortholog); TORC1 signaling (ortholog); ASSOCIATED WITH COVID-19 (ortholog); metabolic dysfunction-associated steatotic liver disease (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN mitochondrion (ortholog) NW_004955528 701182 718037 - 102010406 AGCD01069542;AGCD01069543;AGCD01069544;GBCE01002191;GBCQ01007600;XM_013507430 XP_013362884 MODEL 8736680 protein-coding LOC102030371 olfactory receptor 4D1 NW_004955451 4875038 4876053 - 102030371 AGCD01043146;GBDF01260931;XM_005394037 XP_005394094 MODEL 9041056 protein-coding LOC102011531 vomeronasal type-1 receptor 90-like NW_004955414 14947178 14948107 - 102011531 AGCD01015163;XM_005380439 XP_005380496 MODEL 9017104 protein-coding LOC102006965 UDP-glucuronosyltransferase 2A3-like NW_004955447 3496754 3533598 + 102006965 AGCD01040619;AGCD01040620;AGCD01040621;AGCD01040622;AGCD01040623;AGCD01040624;XM_005392817;XM_013518564 XP_005392874;XP_013374018 MODEL 8741194 ncrna LOC102023440 uncharacterized LOC102023440 NW_004955409 35463032 35471967 - 102023440 AGCD01010424;GBDF01250217;XR_259804 MODEL 9041499 pseudo LOC102027245 tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like NW_004955447 14470943 14473008 - 102027245 AGCD01041006 MODEL 8841640 protein-coding LOC102021703 IQ domain-containing protein F1 ENCODES a protein that exhibits calmodulin binding (ortholog); INVOLVED IN positive regulation of acrosome reaction (ortholog); positive regulation of flagellated sperm motility involved in capacitation (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955532 3559990 3561238 - 102021703 AGCD01070287;GBDF01010023;XM_005410328 XP_005410385 MODEL 8961125 protein-coding Brpf1 bromodomain and PHD finger containing 1 ENCODES a protein that exhibits acetyltransferase activator activity (ortholog); histone H4K12 acetyltransferase activity (ortholog); histone H4K5 acetyltransferase activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); common myeloid progenitor cell proliferation (ortholog); neural tube formation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Developmental Disabilities (ortholog); Developmental Disease (ortholog); FOUND IN chromosome (ortholog); cytoplasm (ortholog); histone acetyltransferase complex (ortholog) NW_004955561 1260237 1275953 + 102006294 AGCD01073845;GBDF01089085;XM_005413023;XM_005413024;XM_005413025;XM_005413026;XM_005413027;XM_005413028;XM_013509081 XP_005413080;XP_005413081;XP_005413082;XP_005413083;XP_005413084;XP_005413085;XP_013364535 MODEL 8833569 protein-coding Pwwp3a PWWP domain containing 3A, DNA repair factor ENCODES a protein that exhibits nucleosome binding (ortholog); INVOLVED IN chromatin organization (ortholog); DNA repair (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955495 6552305 6574191 - 102005817 AGCD01062085;GBCB01060538;XM_013505292 XP_013360746 MODEL 8855238 protein-coding Prpsap2 phosphoribosyl pyrophosphate synthetase associated protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN bone development (ortholog); FOUND IN protein-containing complex (ortholog); ribose phosphate diphosphokinase complex (ortholog) NW_004955467 676845 722175 - 102007531 AGCD01051231;AGCD01051232;AGCD01051233;AGCD01051234;AGCD01051235;GBDK01279678;XM_005399288;XM_013522228 XP_005399345;XP_013377682 MODEL 8776602 protein-coding Sds serine dehydratase ENCODES a protein that exhibits L-serine ammonia-lyase activity (ortholog); protein homodimerization activity (ortholog); pyridoxal phosphate binding (ortholog); INVOLVED IN L-serine catabolic process (ortholog); protein-containing complex assembly (ortholog); pyruvate biosynthetic process (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955482 9646523 9653471 - 102017661 AGCD01057578;GBDF01049073;XM_005403224;XM_005403225 XP_005403281;XP_005403282 MODEL 39133372 snrna U4 U4 spliceosomal RNA 8944585 protein-coding Retreg1 reticulophagy regulator 1 ENCODES a protein that exhibits endoplasmic reticulum-autophagosome adaptor activity (ortholog); INVOLVED IN autophagy (ortholog); collagen catabolic process (ortholog); endoplasmic reticulum organization (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); genetic disease (ortholog); hereditary sensory and autonomic neuropathy (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955426 5574207 5688236 - 102012106 AGCD01026130;AGCD01026131;AGCD01026132;AGCD01026133;AGCD01026134;AGCD01026135;AGCD01026136;AGCD01026137;AGCD01026138;GBCB01023016;XM_005386135;XM_005386136 XP_005386192;XP_005386193 MODEL 9025702 protein-coding Pdgfa platelet derived growth factor subunit A ENCODES a protein that exhibits collagen binding (ortholog); growth factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); angiogenesis (ortholog); animal organ morphogenesis (ortholog); PARTICIPATES IN ceramide signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Animal Mammary Neoplasms (ortholog); Brain Injuries (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog); microvillus (ortholog) NW_004955460 8328400 8346755 - 102008921 AGCD01048514;AGCD01048515;GBDF01074297;XM_005397774;XM_005397776;XM_013521277;XM_013521278;XM_013521280;XM_013521281;XM_013521282 XP_005397831;XP_005397833;XP_013376731;XP_013376732;XP_013376734;XP_013376735;XP_013376736 MODEL 8766212 protein-coding Rufy2 RUN and FYVE domain containing 2 ENCODES a protein that exhibits SH3 domain binding (ortholog); FOUND IN cytoplasm (ortholog) NW_004955425 20632271 20658582 - 102007573 AGCD01025751;GBCE01097206;GBDF01000428;XM_005385993;XM_005385995;XM_005385997;XM_013514826;XR_261163 XP_005386050;XP_005386052;XP_005386054;XP_013370280 MODEL 8945134 pseudo LOC102012720 translationally-controlled tumor protein pseudogene NW_004955403 40178459 40178980 - 102012720 AGCD01002666 MODEL 8792442 protein-coding LOC102011124 olfactory receptor 2K2 NW_004955419 15925491 15926438 + 102011124 AGCD01020094;XM_013513143 XP_013368597 MODEL 8834159 protein-coding Liat1 ligand of ATE1 ENCODES a protein that exhibits molecular condensate scaffold activity (ortholog); INVOLVED IN membraneless organelle assembly (ortholog); protein arginylation (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog) NW_004955481 2079002 2083141 + 102025004 AGCD01056863;GBBH01065430;XM_005402635;XM_005402636 XP_005402692;XP_005402693 MODEL 8930877 ncrna LOC102025871 uncharacterized LOC102025871 NW_004955455 3370611 3377968 - 102025871 AGCD01045622;GBDF01086770;XR_262818 MODEL 8841152 ncrna LOC102024462 uncharacterized LOC102024462 NW_004955417 29298430 29304548 - 102024462 AGCD01018595;AGCD01018596;GBDF01180782;XR_001233401;XR_001233402 MODEL 8708630 ncrna LOC102017628 uncharacterized LOC102017628 NW_004955454 3267669 3273574 - 102017628 AGCD01045061;GBDF01144321;XR_262778 MODEL 8826727 protein-coding Serping1 serpin family G member 1 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN negative regulation of complement activation, lectin pathway (ortholog); PARTICIPATES IN coagulation cascade pathway; kallikrein-kinin cascade pathway; ASSOCIATED WITH acquired angioedema (ortholog); Acute Experimental Pancreatitis (ortholog); Acute Lung Injury (ortholog); FOUND IN extracellular region (ortholog) NW_004955511 2545337 2557850 + 102019092 AGCD01066414;GBCQ01008778;GBDF01198841;XM_013506484 XP_013361938 MODEL 8860096 pseudo LOC102009590 major facilitator superfamily domain-containing protein 8-like NW_004955467 9964828 9982343 - 102009590 AGCD01051537;AGCD01051538 MODEL 9042608 pseudo LOC102015703 40S ribosomal protein S2 pseudogene NW_004955465 1555464 1557236 + 102015703 AGCD01050340 MODEL 8903964 protein-coding Racgap1 Rac GTPase activating protein 1 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); gamma-tubulin binding (ortholog); INVOLVED IN actomyosin contractile ring assembly (ortholog); erythrocyte differentiation (ortholog); mitotic cytokinesis (ortholog); ASSOCIATED WITH congenital dyserythropoietic anemia type IIIb (ortholog); hepatocellular carcinoma (ortholog); polycystic ovary syndrome (ortholog); FOUND IN centralspindlin complex (ortholog); cleavage furrow (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955547 584885 615883 - 102010737 AGCD01072165;AGCD01072166;AGCD01072167;GBBH01067025;XM_005411860;XM_005411861;XM_005411862;XM_005411863 XP_005411917;XP_005411918;XP_005411919;XP_005411920 MODEL 8958292 protein-coding LOC102026243 pulmonary surfactant-associated protein A NW_004955510 256568 260747 - 102026243 AGCD01066144;GBDK01092988;XM_005407868 XP_005407925 MODEL 8740819 pseudo LOC102003734 RWD domain-containing protein 1 pseudogene NW_004955457 11994927 11995651 + 102003734 AGCD01046997 MODEL 8936139 protein-coding Wdfy4 WDFY family member 4 INVOLVED IN antigen processing and presentation (ortholog); CD8-positive, alpha-beta T cell activation (ortholog); cellular response to virus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Developmental Disabilities (ortholog) NW_004955556 1178970 1421139 - 102004981 AGCD01073187;AGCD01073188;AGCD01073189;AGCD01073190;AGCD01073191;AGCD01073192;AGCD01073193;AGCD01073194;GBDK01194697;XM_013508790;XM_013508791;XM_013508792;XM_013508793;XM_013508794;XM_013508795;XM_013508796;XM_013508797;XM_013508798 XP_013364244;XP_013364245;XP_013364246;XP_013364247;XP_013364248;XP_013364249;XP_013364250;XP_013364251;XP_013364252 MODEL 8904217 protein-coding Pax4 paired box 4 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN circadian rhythm (ortholog); enteroendocrine cell differentiation (ortholog); intestinal enterochromaffin enteroendocrine cell differentiation (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); diabetic ketoacidosis (ortholog); hyperglycemia (ortholog) NW_004955479 8660089 8664463 - 102023260 AGCD01056451;GBDF01199537;XM_005402362 XP_005402419 MODEL 8834371 protein-coding Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 ENCODES a protein that exhibits ATP-dependent chromatin remodeler activity (ortholog); chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN cardiac right ventricle formation (ortholog); chromatin remodeling (ortholog); heart morphogenesis (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH COVID-19 (ortholog); Left Ventricular Hypertrophy (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nBAF complex (ortholog) NW_004955491 5653284 5657546 - 102006255 AGCD01060494;GBCE01009890;GBDJ01079984;XM_005404823;XM_013504626 XP_005404880;XP_013360080 MODEL 10381697 ncrna LOC106148190 uncharacterized LOC106148190 NW_004955417 3406652 3446568 - 106148190 AGCD01017914;AGCD01017915;XR_001233404 MODEL 8740170 protein-coding Rbbp4 RB binding protein 4, chromatin remodeling factor ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); histone binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); DNA replication-dependent chromatin assembly (ortholog); regulation of DNA-templated transcription (ortholog); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; Hedgehog signaling pathway; ISWI family mediated chromatin remodeling pathway; FOUND IN ATPase complex (ortholog); CAF-1 complex (ortholog); chromatin (ortholog) NW_004955452 10955399 10975036 + 102025755 AGCD01044317;AGCD01044318;AGCD01044319;GBDF01043528;XM_005395079 XP_005395136 MODEL 8840846 protein-coding Rims4 regulating synaptic membrane exocytosis 4 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN regulation of membrane potential (ortholog); regulation of synapse organization (ortholog); regulation of synaptic vesicle exocytosis (ortholog); FOUND IN glutamatergic synapse (ortholog); synapse (ortholog); synaptic membrane (ortholog) NW_004955445 12542824 12604355 + 102015787 AGCD01039758;AGCD01039759;GBDF01102651;XM_005392463 XP_005392520 MODEL 8943932 protein-coding Brpf3 bromodomain and PHD finger containing 3 ENCODES a protein that exhibits histone H3K14 acetyltransferase activity (ortholog); histone H4K12 acetyltransferase activity (ortholog); histone H4K5 acetyltransferase activity (ortholog); INVOLVED IN positive regulation of DNA replication (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN histone acetyltransferase complex (ortholog); MOZ/MORF histone acetyltransferase complex (ortholog); nucleus (ortholog) NW_004955437 3951160 3985133 + 102005966 AGCD01034358;GBCB01061515;GBCE01141854;XM_005389580 XP_005389637 MODEL 10249118 ncrna LOC106149933 uncharacterized LOC106149933 NW_004955458 12709287 12721892 - 106149933 AGCD01047788;GBCB01068735;XR_001236429;XR_001236430 MODEL 8800706 protein-coding Prr11 proline rich 11 INVOLVED IN regulation of cell cycle (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955451 3813617 3839521 - 102016335 AGCD01043074;AGCD01043075;GBDJ01400550;XM_005393991;XM_013519224;XM_013519225 XP_005394048;XP_013374678;XP_013374679 MODEL 10325184 ncrna LOC106147091 uncharacterized LOC106147091 NW_004955518 1027892 1038741 - 106147091 AGCD01067755;GBBH01168264;XR_001231831 MODEL 8707836 protein-coding Slc51a solute carrier family 51 member A ENCODES a protein that exhibits bile acid transmembrane transporter activity (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); bile acid secretion (ortholog); ASSOCIATED WITH cholestasis (ortholog); cognitive disorder (ortholog); Diabetes Complications (ortholog); FOUND IN basolateral plasma membrane (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955420 12452562 12463369 + 102009507 AGCD01020865;GBDF01222832;XM_005383122;XM_005383123;XM_013513396;XM_013513397 XP_005383179;XP_005383180;XP_013368850;XP_013368851 MODEL 8877786 protein-coding Thoc5 THO complex subunit 5 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN blastocyst development (ortholog); cell morphogenesis (ortholog); monocyte differentiation (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; ASSOCIATED WITH anemia (ortholog); breast carcinoma (ortholog); leukopenia (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955455 3761933 3795517 - 102008060 AGCD01045650;AGCD01045651;GBCB01056026;XM_005396212;XM_013520426 XP_005396269;XP_013375880 MODEL 8877918 protein-coding LOC102010753 putative uncharacterized protein ZNRD1-AS1 NW_004955583 186389 190965 - 102010753 AGCD01075800;AGCD01075801;GBDI01025273;XM_013509840 XP_013365294 MODEL 8844986 protein-coding Psmg4 proteasome assembly chaperone 4 ENCODES a protein that exhibits protein-containing complex binding (ortholog); FOUND IN protein folding chaperone complex (ortholog); protein-containing complex (ortholog) NW_004955465 10007136 10014921 - 102014653 AGCD01050498;GBBH01140190;GBCE01097527;XM_005398894 XP_005398951 MODEL 8843085 protein-coding LOC102011127 zinc finger protein 852 NW_004955420 26958234 26960564 + 102011127 AGCD01021441;XM_013513349 XP_013368803 MODEL 8917689 protein-coding Rufy3 RUN and FYVE domain containing 3 ENCODES a protein that exhibits dynactin binding (ortholog); INVOLVED IN actin filament organization (ortholog); negative regulation of axonogenesis (ortholog); positive regulation of axon extension (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); skin disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955447 2200788 2266008 - 102022439 AGCD01040535;AGCD01040536;GBCE01184705;XM_005392776;XM_005392777;XM_005392778;XM_005392779;XM_013518505;XM_013518506 XP_005392833;XP_005392834;XP_005392835;XP_005392836;XP_013373959;XP_013373960 MODEL 9012887 pseudo LOC102023445 probable ATP-dependent RNA helicase DDX41 pseudogene NW_004955460 12857980 12860166 + 102023445 AGCD01048664 MODEL 9025652 pseudo LOC102006967 transmembrane and TPR repeat-containing protein 3 pseudogene NW_004955582 159962 162499 - 102006967 AGCD01075747 MODEL 8786505 pseudo LOC102017630 phosphatidylinositol 5-phosphate 4-kinase type-2 alpha pseudogene NW_004955406 10315071 10316248 - 102017630 AGCD01005855 MODEL 9017903 pseudo LOC102028589 SCAN domain-containing protein 3-like NW_004955557 597205 603100 + 102028589 AGCD01073246;AGCD01073247;XM_005412651 MODEL 8734927 pseudo LOC102008477 40S ribosomal protein S24 pseudogene NW_004955447 14840245 14840673 - 102008477 AGCD01041022 MODEL 8953922 protein-coding Slc15a3 solute carrier family 15 member 3 ENCODES a protein that exhibits dipeptide transmembrane transporter activity (ortholog); peptidoglycan transmembrane transporter activity (ortholog); INVOLVED IN dipeptide import across plasma membrane (ortholog); peptidoglycan transport (ortholog); positive regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955511 5574686 5582992 - 102019192 AGCD01066571;AGCD01066572;GBDI01323373;GBDJ01315022;XM_005408288 XP_005408345 MODEL 9014257 ncrna LOC102003737 uncharacterized LOC102003737 NW_004955459 3075325 3077325 - 102003737 AGCD01048007;GBCQ01075158;XR_263012 MODEL 10222718 ncrna LOC106148191 uncharacterized LOC106148191 NW_004955417 26342075 26343473 - 106148191 AGCD01018506;GBBH01056468;XR_001233407 MODEL 8907091 ncrna LOC102012723 uncharacterized LOC102012723 NW_004955452 3278140 3282430 + 102012723 AGCD01043918;GBDF01194364;XR_262644 MODEL 9037805 pseudo LOC102018774 epidermal growth factor receptor substrate 15-like NW_004955550 90761 93344 - 102018774 AGCD01072481 MODEL 8710348 protein-coding Plce1 phospholipase C epsilon 1 ENCODES a protein that exhibits C-type glycerophospholipase activity (ortholog); enzyme binding (ortholog); phosphatidylinositol-4,5-bisphosphate phospholipase C activity (ortholog); INVOLVED IN diacylglycerol biosynthetic process (ortholog); epidermal growth factor receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); benign familial hematuria (ortholog); dengue hemorrhagic fever (ortholog); FOUND IN cytosol (ortholog); lamellipodium (ortholog); plasma membrane (ortholog) NW_004955507 555570 825568 + 102004404 AGCD01065477;AGCD01065478;AGCD01065479;AGCD01065480;AGCD01065481;AGCD01065482;AGCD01065483;AGCD01065484;AGCD01065485;AGCD01065486;AGCD01065487;AGCD01065488;GBDK01321403;XM_005407528;XM_013506159;XM_013506160 XP_005407585;XP_013361613;XP_013361614 MODEL 39131390 protein-coding PPDPF pancreatic progenitor cell differentiation and proliferation factor 10097631 ncrna LOC106149934 uncharacterized LOC106149934 NW_004955458 12690350 12694313 - 106149934 AGCD01047788;XR_001236431 MODEL 8844418 ncrna LOC102024464 uncharacterized LOC102024464 NW_004955419 14164557 14168244 - 102024464 AGCD01020013;GBDJ01026578;XR_001233568 MODEL 8708268 protein-coding LOC102030372 prolactin-like NW_004955632 63921 71559 - 102030372 AGCD01077572;XM_005415040 XP_005415097 MODEL 8994964 ncrna LOC102010340 uncharacterized LOC102010340 NW_004955457 12942492 12966671 + 102010340 AGCD01047033;GBBH01124502;XR_262946 MODEL 8967985 protein-coding Tor4a torsin family 4 member A ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955513 5263299 5265622 + 102003049 AGCD01066964;AGCD01066965;GBBH01207327;GBDI01262912;XM_013506740 XP_013362194 MODEL 8767813 protein-coding Emilin2 elastin microfibril interfacer 2 INVOLVED IN negative regulation of cell migration (ortholog); positive regulation of angiogenesis (ortholog); positive regulation of apoptotic process (ortholog); FOUND IN EMILIN complex (ortholog); extracellular region (ortholog) NW_004955402 7507674 7519978 - 102016008 AGCD01000175;AGCD01000176;GBDF01025495;GBDI01175041;XM_013518815 XP_013374269 MODEL 8741147 protein-coding Trim36 tripartite motif containing 36 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN acrosome reaction (ortholog); mitotic cytokinesis (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH anencephaly (ortholog); Anencephaly 1 (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955408 34909194 34939635 - 102021524 AGCD01008924;GBDF01006446;GBDK01026073;XM_013506978 XP_013362432 MODEL 8885081 protein-coding LOC102023450 acid ceramidase-like NW_004955411 35205669 35207222 + 102023450 AGCD01012421;GBDF01118993;XM_005377888 XP_005377945 MODEL 8936073 protein-coding LOC102027246 cytochrome P450 2G1-like NW_004955578 189244 198423 + 102027246 AGCD01075465;GBBH01088797;XM_005414000 XP_005414057 MODEL 8726609 protein-coding Pwwp3b PWWP domain containing 3B ASSOCIATED WITH factor VIII deficiency (ortholog) NW_004955548 2904964 2951956 + 102006614 AGCD01072411;AGCD01072412;GBDF01125244;XM_005412014;XM_005412015;XM_005412016;XM_013508513;XM_013508514;XM_013508515 XP_005412071;XP_005412072;XP_005412073;XP_013363967;XP_013363968;XP_013363969 MODEL 9026301 protein-coding LOC102026244 olfactory receptor 5D18-like NW_004955511 626783 627724 - 102026244 AGCD01066336;XM_013506404 XP_013361858 MODEL 8992140 protein-coding LOC102027931 protein very KIND-like NW_004955927 1229 2851 + 102027931 AGCD01078681;XM_005415150 XP_005415207 MODEL 9055423 protein-coding Sntg1 syntrophin gamma 1 FOUND IN cytoplasm (ortholog); cytoskeleton (ortholog); ruffle membrane (ortholog) NW_004955454 9698609 10439874 + 102026291 AGCD01045349;AGCD01045350;AGCD01045351;AGCD01045352;AGCD01045353;AGCD01045354;AGCD01045355;AGCD01045356;AGCD01045357;AGCD01045358;AGCD01045359;AGCD01045360;AGCD01045361;AGCD01045362;AGCD01045363;AGCD01045364;AGCD01045365;AGCD01045366;GBDF01142064;XM_005396048;XM_005396049;XM_005396050 XP_005396105;XP_005396106;XP_005396107 MODEL 8737027 protein-coding Pdgfb platelet derived growth factor subunit B ENCODES a protein that exhibits chemoattractant activity (ortholog); collagen binding (ortholog); growth factor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); blood vessel development (ortholog); blood vessel morphogenesis (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH AIDS Dementia Complex (ortholog); Alzheimer's disease (ortholog); asthma (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955413 25150702 25166987 - 102027508 AGCD01014397;GBCE01152520;GBDK01085597;XM_005379284 XP_005379341 MODEL 8799894 pseudo LOC102011538 peptidyl-prolyl cis-trans isomerase A pseudogene NW_004955477 4017638 4038493 + 102011538 AGCD01055577 MODEL 10376168 ncrna LOC106147092 uncharacterized LOC106147092 NW_004955518 4747515 4749907 + 106147092 AGCD01067837;GBDJ01211909;XR_001231832 MODEL 8817271 protein-coding Slc51b SLC51 subunit beta ENCODES a protein that exhibits bile acid transmembrane transporter activity (ortholog); protein heterodimerization activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); bile acid secretion (ortholog); ASSOCIATED WITH cholestasis (ortholog); cognitive disorder (ortholog); Diabetes Complications (ortholog); FOUND IN basolateral plasma membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955450 10365554 10374209 - 102009562 AGCD01042614;AGCD01042615;GBCQ01066742;XM_005393727 XP_005393784 MODEL 8986699 protein-coding Rbbp5 RB binding protein 5, histone lysine methyltransferase complex subunit ENCODES a protein that exhibits histone binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN DNA damage response (ortholog); gene expression (ortholog); response to estrogen (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN histone methyltransferase complex (ortholog); MLL1 complex (ortholog); MLL1/2 complex (ortholog) NW_004955406 40868290 40904343 - 102004894 AGCD01006667;GBDI01257066;XM_005375343;XM_005375344;XM_005375346;XM_013522894;XM_013522897 XP_005375400;XP_005375401;XP_005375403;XP_013378348;XP_013378351 MODEL 8986734 protein-coding Slc15a4 solute carrier family 15 member 4 ENCODES a protein that exhibits dipeptide transmembrane transporter activity (ortholog); L-histidine transmembrane transporter activity (ortholog); peptide:proton symporter activity (ortholog); INVOLVED IN dipeptide import across plasma membrane (ortholog); histidine transport (ortholog); L-histidine transmembrane export from vacuole (ortholog); ASSOCIATED WITH systemic lupus erythematosus (ortholog); FOUND IN early endosome membrane (ortholog); endolysosome membrane (ortholog); endosome membrane (ortholog) NW_004955482 2327137 2343980 + 102006458 AGCD01057244;GBBH01117824;XM_013503714 XP_013359168 MODEL 8983275 pseudo LOC102021709 60S ribosomal protein L6-like NW_004955439 8223203 8224183 + 102021709 AGCD01035783 MODEL 8846430 pseudo LOC102010757 28S ribosomal protein S36, mitochondrial pseudogene NW_004955402 51239421 51239728 - 102010757 AGCD01001297 MODEL 8848716 protein-coding LOC102006582 serine protease 44-like NW_004955420 25378681 25382275 + 102006582 AGCD01021355;GBDF01077365;XM_013513624 XP_013369078 MODEL 9033332 ncrna LOC102019210 uncharacterized LOC102019210 NW_004955443 7120644 7141367 + 102019210 AGCD01038273;GBDF01245079;XR_001235484 MODEL 8747057 protein-coding LOC102015705 uncharacterized LOC102015705 NW_004955466 1072520 1075515 + 102015705 AGCD01050688;GBDF01250391;XM_005399245 XP_005399302 MODEL 8760135 protein-coding LOC102024465 olfactory receptor 50-like NW_004955419 5591431 5598017 - 102024465 AGCD01019827;XM_005382925 XP_005382982 MODEL 9013641 protein-coding Serpinh1 serpin family H member 1 ENCODES a protein that exhibits obsolete unfolded protein binding (ortholog); INVOLVED IN chondrocyte development involved in endochondral bone morphogenesis (ortholog); collagen biosynthetic process (ortholog); collagen fibril organization (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); Fetal Membranes, Premature Rupture (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955414 16284845 16292828 - 102024992 AGCD01015208;GBCE01003981;XM_005379884;XM_005379885;XM_013512064 XP_005379941;XP_005379942;XP_013367518 MODEL 8824573 protein-coding LOC102006973 translational activator GCN1-like NW_004956042 4662 8692 - 102006973 AGCD01078929;XM_005415165 XP_005415222 MODEL 39133373 snrna U4 U4 spliceosomal RNA 8988791 protein-coding Wdhd1 WD repeat and HMG-box DNA binding protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); RNA binding (ortholog); RNA polymerase binding (ortholog); INVOLVED IN heterochromatin formation (ortholog); regulation of chromosome organization (ortholog); RNA processing (ortholog); ASSOCIATED WITH cholangiocarcinoma (ortholog); FOUND IN chromosome, centromeric region (ortholog); nucleoplasm (ortholog) NW_004955409 8539617 8587537 + 102028723 AGCD01009420;GBDF01249434;XM_005376757;XM_005376758 XP_005376814;XP_005376815 MODEL 9042078 protein-coding Retreg2 reticulophagy regulator family member 2 ENCODES a protein that exhibits endoplasmic reticulum-autophagosome adaptor activity (ortholog); INVOLVED IN collagen catabolic process (ortholog); endoplasmic reticulum organization (ortholog); reticulophagy (ortholog); ASSOCIATED WITH cerebrotendinous xanthomatosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955453 14258523 14263573 - 102021839 AGCD01044860;GBCQ01006315;XM_005395587 XP_005395644 MODEL 8756076 protein-coding LOC102005515 zinc finger protein 350 NW_004955558 546358 562360 + 102005515 AGCD01073376;GBBH01131689;XM_005412662;XM_005412664;XM_005412665;XM_005412666;XM_005412667;XM_005412668;XM_013508866;XM_013508867 XP_005412719;XP_005412721;XP_005412722;XP_005412723;XP_005412724;XP_005412725;XP_013364320;XP_013364321 MODEL 8964166 protein-coding Rin1 Ras and Rab interactor 1 ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN associative learning (ortholog); memory (ortholog); negative regulation of synaptic plasticity (ortholog); ASSOCIATED WITH melanoma (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); neuronal cell body (ortholog) NW_004955422 18989814 18996570 + 102014060 AGCD01022970;GBDJ01361249;XM_005384412 XP_005384469 MODEL 8773373 protein-coding LOC102028943 olfactory receptor 8B3-like NW_004955412 25218420 25219370 + 102028943 AGCD01013140;XM_005378650 XP_005378707 MODEL 9011229 protein-coding Lif LIF interleukin 6 family cytokine ENCODES a protein that exhibits cytokine activity (ortholog); growth factor activity (ortholog); leukemia inhibitory factor receptor binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); astrocyte differentiation (ortholog); blood vessel remodeling (ortholog); ASSOCIATED WITH brain ischemia (ortholog); Cardiomegaly (ortholog); colon cancer (ortholog); FOUND IN cytosol (ortholog); extracellular region (ortholog) NW_004955455 4489515 4505439 - 102016978 AGCD01045676;AGCD01045677;GBBH01132054;XM_005396245;XM_005396246;XM_005396248;XM_013520369 XP_005396302;XP_005396303;XP_005396305;XP_013375823 MODEL 8888891 protein-coding Prr12 proline rich 12 INVOLVED IN intracellular protein localization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN nucleus (ortholog) NW_004955559 1253216 1279414 - 102011703 AGCD01073638;AGCD01073639;GBBH01228692;XM_005412863;XM_013508984 XP_005412920;XP_013364438 MODEL 8834490 protein-coding LOC102011130 chromosome unknown open reading frame, human C20orf173 NW_004955422 25895181 25897125 + 102011130 AGCD01023269;AGCD01023270;GBDF01017778;XM_005384792 XP_005384849 MODEL 8809041 protein-coding Thoc6 THO complex subunit 6 INVOLVED IN central nervous system development (ortholog); mRNA export from nucleus (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; ASSOCIATED WITH Beaulieu-Boycott-Innes Syndrome (ortholog); genetic disease (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955442 14314100 14317726 - 102007059 AGCD01037810;GBDK01189523;XM_005391375;XM_005391377 XP_005391432;XP_005391434 MODEL 8822692 protein-coding Rufy4 RUN and FYVE domain containing 4 ENCODES a protein that exhibits dynactin binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); cellular response to interleukin-4 (ortholog); multivesicular body-lysosome fusion (ortholog); FOUND IN autophagosome (ortholog); endolysosome (ortholog); lysosome (ortholog) NW_004955453 15243125 15259086 - 102016885 AGCD01044890;GBCE01034218;XM_005395668;XM_013519836 XP_005395725;XP_013375290 MODEL 8800130 protein-coding Psors1c2 psoriasis susceptibility 1 candidate 2 ASSOCIATED WITH multiple myeloma (ortholog) NW_004955583 975037 977944 - 102024627 AGCD01075875;GBDJ01298572;XM_005414333;XM_013509772;XM_013509773 XP_005414390;XP_013365226;XP_013365227 MODEL 8860920 pseudo LOC102017634 matrin-3 pseudogene NW_004955408 32748713 32750084 + 102017634 AGCD01008854 MODEL 626189172 snorna SNORA58B small nucleolar RNA, H/ACA box 58B 9056018 protein-coding Prcp prolylcarboxypeptidase ENCODES a protein that exhibits metallocarboxypeptidase activity (ortholog); INVOLVED IN angiogenesis involved in wound healing (ortholog); angiotensin maturation (ortholog); energy homeostasis (ortholog); PARTICIPATES IN kallikrein-kinin cascade pathway; ASSOCIATED WITH brain infarction (ortholog); FOUND IN basal part of cell (ortholog); extracellular region (ortholog); lysosome (ortholog) NW_004955414 9631223 9700537 + 102029731 AGCD01015031;GBDJ01083554;XM_005379809 XP_005379866 MODEL 8825168 protein-coding Emilin3 elastin microfibril interfacer 3 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN cytoplasm (ortholog); EMILIN complex (ortholog) NW_004955445 15590996 15599813 + 102028030 AGCD01039848;GBDK01269639;XM_005392503;XM_005392505;XM_013518276 XP_005392560;XP_005392562;XP_013373730 MODEL 8879469 protein-coding Pax5 paired box 5 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN adult behavior (ortholog); cerebral cortex development (ortholog); embryonic cranial skeleton morphogenesis (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955419 29395631 29577272 + 102009611 AGCD01020495;AGCD01020496;AGCD01020497;GBDI01055752;XM_005382889;XM_005382890;XM_005382893;XM_005382897 XP_005382946;XP_005382947;XP_005382950;XP_005382954 MODEL 8890803 ncrna LOC102019212 uncharacterized LOC102019212 NW_004955444 6086193 6102188 - 102019212 AGCD01038849;GBCB01024205;XR_262243 MODEL 8745186 ncrna LOC102025880 uncharacterized LOC102025880 NW_004955409 24661068 24666415 + 102025880 AGCD01010093;GBDI01259143;XR_259793 MODEL 8967392 protein-coding LOC102008482 hornerin NW_004955589 190459 199095 + 102008482 AGCD01076158;AGCD01076159;GBCC01001512;XM_005414528;XM_005414529;XM_005414531;XM_013509953;XM_013509954 XP_005414585;XP_005414586;XP_005414588;XP_013365407;XP_013365408 MODEL 8785546 pseudo LOC102028590 max-interacting protein 1 pseudogene NW_004955562 1062433 1063120 + 102028590 AGCD01073961 MODEL 8758594 ncrna LOC102023451 uncharacterized LOC102023451 NW_004955465 5552993 5555587 + 102023451 AGCD01050431;GBDF01260515;XR_263236 MODEL 8847509 protein-coding Trim37 tripartite motif containing 37 ENCODES a protein that exhibits chromatin binding (ortholog); histone H2AK119 ubiquitin ligase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN aggresome assembly (ortholog); negative regulation of centriole replication (ortholog); negative regulation of gene expression, epigenetic (ortholog); ASSOCIATED WITH Craniofacial Abnormalities (ortholog); Dwarfism (ortholog); Fibrous Dysplasia of Bone (ortholog); FOUND IN aggresome (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955451 3839757 4014178 + 102019228 AGCD01043075;AGCD01043076;AGCD01043077;AGCD01043078;AGCD01043079;AGCD01043080;AGCD01043081;AGCD01043082;AGCD01043083;AGCD01043084;AGCD01043085;AGCD01043086;AGCD01043087;XM_005393999;XM_013519212;XM_013519214;XM_013519215;XM_013519216;XM_013519217;XM_013519218;XM_013519219;XM_013519220;XM_013519221 XP_005394056;XP_013374666;XP_013374668;XP_013374669;XP_013374670;XP_013374671;XP_013374672;XP_013374673;XP_013374674;XP_013374675 MODEL 8785742 protein-coding Brs3 bombesin receptor subtype 3 ASSOCIATED WITH Hyperphagia (ortholog); hypertension (ortholog); obesity (ortholog); FOUND IN neuronal cell body (ortholog) NW_004955489 8627569 8631810 - 102013423 AGCD01060021;XM_005404590 XP_005404647 MODEL 10357874 ncrna LOC106148192 uncharacterized LOC106148192 NW_004955417 25247577 25299647 - 106148192 AGCD01018475;AGCD01018476;AGCD01018477;AGCD01018478;XR_001233408;XR_001233409 MODEL 8775464 pseudo LOC102027936 cytoskeleton-associated protein 2-like pseudogene NW_004955404 37199526 37209087 - 102027936 AGCD01004203;AGCD01004204 MODEL 8849945 protein-coding Pxdc1 PX domain containing 1 NW_004955465 9589248 9613700 + 102013916 AGCD01050493;GBCE01005280;GBDJ01191084;XM_005398893 XP_005398950 MODEL 8933336 protein-coding LOC102018778 tubulin alpha-3 chain NW_004955442 19231448 19233877 - 102018778 AGCD01038042;AGCD01038043;GBBH01211441;XM_005391874 XP_005391931 MODEL 8828733 protein-coding LOC102009596 natural cytotoxicity triggering receptor 3 ligand 1-like NW_004955414 32190761 32204203 + 102009596 AGCD01015777;GBBH01134981;XM_005380382;XM_005380383;XM_013512027 XP_005380439;XP_005380440;XP_013367481 MODEL 8974897 protein-coding Lifr LIF receptor subunit alpha ENCODES a protein that exhibits ciliary neurotrophic factor receptor activity (ortholog); ciliary neurotrophic factor receptor binding (ortholog); coreceptor activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); bone development (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH congenital anomalies of kidney and urinary tract (ortholog); connective tissue disease (ortholog); Developmental Disabilities (ortholog); FOUND IN ciliary neurotrophic factor receptor complex (ortholog); extracellular region (ortholog); signaling receptor complex (ortholog) NW_004955426 23045867 23093694 - 102019413 AGCD01026633;AGCD01026634;GBCQ01002072;XM_013514985;XM_013514986 XP_013370439;XP_013370440 MODEL 9005279 protein-coding Plcg1 phospholipase C gamma 1 ENCODES a protein that exhibits C-type glycerophospholipase activity (ortholog); glutamate receptor binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN calcium ion transport (ortholog); calcium-mediated signaling (ortholog); cell migration (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH acute myocardial infarction (ortholog); adult T-cell leukemia/lymphoma (ortholog); Alzheimer's disease (ortholog); FOUND IN cell-cell junction (ortholog); clathrin-coated vesicle (ortholog); COP9 signalosome (ortholog) NW_004955445 15787496 15823859 - 102004432 AGCD01039855;AGCD01039856;GBCE01077323;GBDF01085611;XM_005392520 XP_005392577 MODEL 8836550 protein-coding Ppdpfl pancreatic progenitor cell differentiation and proliferation factor like NW_004955454 8902630 8907721 + 102025977 AGCD01045328;GBCB01001157;XM_005396047 XP_005396104 MODEL 8971957 protein-coding Prr13 proline rich 13 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955458 730805 735528 + 102021208 AGCD01047151;AGCD01047152;GBDF01003931;XM_005397178 XP_005397235 MODEL 8860742 protein-coding LOC102010344 tubulin alpha-3 chain NW_004955461 6060418 6069340 - 102010344 AGCD01048891;GBDK01010972;XM_005398006 XP_005398063 MODEL 8708721 pseudo LOC102021711 disintegrin and metalloproteinase domain-containing protein 10 pseudogene NW_004955550 500606 504358 - 102021711 AGCD01072509 MODEL 8699819 protein-coding Smarce1 SWI/SNF related BAF chromatin remodeling complex subunit E1 ENCODES a protein that exhibits ATP-dependent chromatin remodeler activity (ortholog); N-acetyltransferase activity (ortholog); nuclear receptor binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); negative regulation of DNA-templated transcription (ortholog); neurogenesis (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Coffin-Siris syndrome (ortholog); Coffin-Siris syndrome 5 (ortholog); FOUND IN nBAF complex (ortholog); npBAF complex (ortholog); nucleoplasm (ortholog) NW_004955451 15129619 15147487 - 102016124 AGCD01043596;AGCD01043597;GBDF01044017;GBDK01004228;XM_005394363 XP_005394420 MODEL 9055912 ncrna LOC102024466 uncharacterized LOC102024466 NW_004955420 11291287 11311386 - 102024466 AGCD01020801;GBDF01114691;XR_260704 MODEL 39133306 snrna U4 U4 spliceosomal RNA 8966936 protein-coding Retreg3 reticulophagy regulator family member 3 ENCODES a protein that exhibits endoplasmic reticulum-autophagosome adaptor activity (ortholog); INVOLVED IN collagen catabolic process (ortholog); endoplasmic reticulum organization (ortholog); endoplasmic reticulum tubular network organization (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum tubular network (ortholog) NW_004955451 16468845 16486773 - 102020406 AGCD01043679;AGCD01043680;GBBH01145983;XM_005394466 XP_005394523 MODEL 10146066 protein-coding LOC106147093 proline-rich protein HaeIII subfamily 1-like NW_004955518 150076 161371 - 106147093 AGCD01067719;GBDF01083958;GBDF01083959;XM_013506950 XP_013362404 MODEL 8817327 pseudo LOC102011539 succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial pseudogene NW_004955477 3913414 3916387 - 102011539 AGCD01055577 MODEL 8855409 protein-coding Wdpcp WD repeat containing planar cell polarity effector ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); INVOLVED IN auditory receptor cell morphogenesis (ortholog); camera-type eye development (ortholog); cilium assembly (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 1 (ortholog); Bardet-Biedl syndrome 15 (ortholog); FOUND IN axonemal basal plate (ortholog) NW_004955424 20723592 21114801 + 102012774 AGCD01024871;AGCD01024872;AGCD01024873;AGCD01024874;AGCD01024875;AGCD01024876;AGCD01024877;AGCD01024878;AGCD01024879;AGCD01024880;AGCD01024881;AGCD01024882;AGCD01024883;AGCD01024884;AGCD01024885;AGCD01024886;AGCD01024887;AGCD01024888;AGCD01024889;AGCD01024890;AGCD01024891;AGCD01024892;AGCD01024893;GBDF01160193;XM_005385716;XM_005385718;XM_005385719;XM_005385720;XM_013514679;XM_013514680;XM_013514681;XM_013514682;XM_013514683;XM_013514684;XM_013514685;XM_013514686 XP_005385773;XP_005385775;XP_005385776;XP_005385777;XP_013370133;XP_013370134;XP_013370135;XP_013370136;XP_013370137;XP_013370138;XP_013370139;XP_013370140 MODEL 8892831 protein-coding Rack1 receptor for activated C kinase 1 ENCODES a protein that exhibits BH3 domain binding (ortholog); cyclin binding (ortholog); enzyme activator activity (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to growth factor stimulus (ortholog); negative regulation of cell growth (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; insulin-like growth factor signaling pathway; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH morphine dependence (ortholog); Mouth Neoplasms (ortholog); squamous cell carcinoma (ortholog); FOUND IN cell body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955530 78488 83297 + 102003173 AGCD01069830;AY533219;GBDF01008806;XM_005410096 AAS59422;XP_005410153 MODEL 10136071 ncrna LOC106149935 uncharacterized LOC106149935 NW_004955458 12708341 12709134 - 106149935 AGCD01047788;GBDF01013092;XR_001236432 MODEL 8883353 protein-coding Slc52a2 solute carrier family 52 member 2 ENCODES a protein that exhibits 4-hydroxybutyrate receptor activity (ortholog); riboflavin transmembrane transporter activity (ortholog); INVOLVED IN riboflavin transport (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 9 (ortholog); Brown-Vialetto-Van Laere syndrome (ortholog); Brown-Vialetto-Van Laere syndrome 1 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955454 2944169 2982203 + 102027266 AGCD01045040;AGCD01045041;AGCD01045042;AGCD01045043;AGCD01045044;GBDF01080372;XM_005395861;XM_005395862;XM_005395863 XP_005395918;XP_005395919;XP_005395920 MODEL 8983573 protein-coding LOC102030373 chromosome unknown open reading frame, human C4orf27 ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); protein ADP-ribosyltransferase-substrate adaptor activity (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); DNA repair-dependent chromatin remodeling (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); nucleus (ortholog) NW_004955403 36594319 36621020 + 102030373 AGCD01002542;AGCD01002543;AGCD01002544;GBDF01007300;XM_005373553 XP_005373610 MODEL 8915383 protein-coding Sntg2 syntrophin gamma 2 ENCODES a protein that exhibits neuroligin family protein binding (ortholog); PDZ domain binding (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); High Myopia (ortholog); FOUND IN plasma membrane (ortholog) NW_004955487 533719 639056 - 102007345 AGCD01059221;AGCD01059222;AGCD01059223;AGCD01059224;GBDK01266841;XM_005404340;XM_013504329;XM_013504330;XM_013504331;XM_013504332 XP_005404397;XP_013359783;XP_013359784;XP_013359785;XP_013359786 MODEL 8875362 protein-coding Tox thymocyte selection associated high mobility group box ENCODES a protein that exhibits chromatin DNA binding (ortholog); INVOLVED IN CD4-positive, alpha-beta T cell lineage commitment (ortholog); CD4-positive, CD25-positive, alpha-beta regulatory T cell lineage commitment (ortholog); CD8-positive, alpha-beta T cell lineage commitment (ortholog); FOUND IN nucleus (ortholog) NW_004955444 19453789 19796419 + 102004528 AGCD01039281;AGCD01039282;AGCD01039283;AGCD01039284;AGCD01039285;AGCD01039286;AGCD01039287;AGCD01039288;AGCD01039289;AGCD01039290;GBDI01356789;XM_005392187;XM_005392188;XM_005392189;XM_005392190;XM_013518215 XP_005392244;XP_005392245;XP_005392246;XP_005392247;XP_013373669 MODEL 8757838 protein-coding Rbbp6 RB binding protein 6, ubiquitin ligase ENCODES a protein that exhibits protein kinase binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN DNA damage response (ortholog); embryonic organ development (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); FOUND IN centrosome (ortholog); nuclear speck (ortholog); protein-containing complex (ortholog) NW_004955493 3003522 3034638 + 102025257 AGCD01060977;AGCD01060978;GBBH01164809;GBDI01083427;XM_005405106 XP_005405163 MODEL 8787674 protein-coding LOC102006584 kita-kyushu lung cancer antigen 1 homolog NW_004955490 5015885 5017132 - 102006584 AGCD01060199;GBDF01123449;XM_005404649 XP_005404706 MODEL 8879818 protein-coding Pxdn peroxidasin ENCODES a protein that exhibits extracellular matrix structural constituent (ortholog); heme binding (ortholog); laminin-1 binding (ortholog); INVOLVED IN angiogenesis (ortholog); basement membrane assembly (ortholog); basement membrane organization (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); anterior segment dysgenesis (ortholog); anterior segment dysgenesis 7 (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); endoplasmic reticulum (ortholog) NW_004955487 4867427 4936454 + 102021132 AGCD01059317;GBCE01009660;GBCE01009664;XM_005404386;XM_005404387 XP_005404443;XP_005404444 MODEL 8965448 protein-coding LOC102015709 histone acetyltransferase p300-like NW_004955413 26801494 26828627 + 102015709 AGCD01014478;AGCD01014479;AGCD01014480;AGCD01014481;AGCD01014482;GBDF01124584;GBDK01021524;XM_005379340 XP_005379397 MODEL 8840529 pseudo LOC102003747 aldo-keto reductase family 1 member B10-like NW_004955467 4392827 4400286 + 102003747 AGCD01051366 MODEL 9019461 protein-coding LOC102017635 olfactory receptor 6C3-like NW_004955458 2547175 2548122 - 102017635 AGCD01047237;XM_005397495 XP_005397552 MODEL 8918958 protein-coding Serpini1 serpin family I member 1 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN positive regulation of neuron projection development (ortholog); ASSOCIATED WITH familial encephalopathy with neuroserpin inclusion bodies (ortholog); genetic disease (ortholog); Nervous System Malformations (ortholog); FOUND IN cytoplasmic vesicle lumen (ortholog); extracellular region (ortholog); neuronal cell body (ortholog) NW_004955448 16947375 16982114 + 102012485 AGCD01041705;AGCD01041706;AGCD01041707;GBBH01191602;XM_005393142;XM_013518652;XM_013518653 XP_005393199;XP_013374106;XP_013374107 MODEL 8979505 pseudo LOC102021719 60S ribosomal protein L26-like NW_004955448 10606482 10609803 - 102021719 AGCD01041495 MODEL 8716572 pseudo LOC102006974 40S ribosomal protein S10 pseudogene NW_004955404 27148218 27148697 + 102006974 AGCD01003909 MODEL 8935774 pseudo LOC102012724 ras-related protein Rab-5A pseudogene NW_004955404 17557735 17563974 - 102012724 AGCD01003594 MODEL 8804085 protein-coding Prdm1 PR/SET domain 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); histone deacetylase binding (ortholog); histone methyltransferase binding (ortholog); INVOLVED IN aorta development (ortholog); artery morphogenesis (ortholog); cardiac septum development (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); Chronic Hepatitis B (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955411 31434503 31455995 + 102005015 AGCD01012273;GBDK01284038;XM_005377825;XM_005377826 XP_005377882;XP_005377883 MODEL 8807141 pseudo LOC102028944 ATP synthase subunit g, mitochondrial pseudogene NW_004955413 2125074 2125384 - 102028944 AGCD01013540 MODEL 9054138 protein-coding LOC102005516 uncharacterized LOC102005516 NW_004955442 7211768 7238684 + 102005516 AGCD01037621;XM_013517646 XP_013373100 MODEL 8917253 protein-coding Eml1 EMAP like 1 ENCODES a protein that exhibits microtubule binding (ortholog); tubulin binding (ortholog); INVOLVED IN brain development (ortholog); hematopoietic progenitor cell differentiation (ortholog); microtubule cytoskeleton organization (ortholog); ASSOCIATED WITH congenital nervous system abnormality (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); microtubule (ortholog); microtubule cytoskeleton (ortholog) NW_004955438 20991432 21137570 + 102030477 AGCD01035528;AGCD01035529;GBCB01022439;XM_005390419;XM_005390420;XM_005390421;XM_005390422;XM_005390423;XM_005390424;XM_005390425 XP_005390476;XP_005390477;XP_005390478;XP_005390479;XP_005390480;XP_005390481;XP_005390482 MODEL 8791297 protein-coding Sdsl serine dehydratase like ENCODES a protein that exhibits glutamate racemase activity (ortholog); identical protein binding (ortholog); L-serine ammonia-lyase activity (ortholog) NW_004955482 9656563 9670951 + 102018187 AGCD01057578;AGCD01057579;AGCD01057580;AGCD01057581;GBDK01189822;XM_005403227;XM_005403228;XM_013503596 XP_005403284;XP_005403285;XP_013359050 MODEL 8992997 protein-coding LOC102028594 protein FAM220A-like NW_004955448 18888331 18888903 + 102028594 AGCD01041757;XM_013518595 XP_013374049 MODEL 8767907 protein-coding LOC102019219 olfactory receptor 2G2-like NW_004955581 837416 838405 + 102019219 AGCD01075698;XM_005414254 XP_005414311 MODEL 9019940 protein-coding Pdgfc platelet derived growth factor C ENCODES a protein that exhibits platelet-derived growth factor receptor binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN activation of transmembrane receptor protein tyrosine kinase activity (ortholog); animal organ morphogenesis (ortholog); bone development (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); Mesothelioma (ortholog); FOUND IN cell surface (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955471 10318683 10500624 + 102012527 AGCD01053230;AGCD01053231;AGCD01053232;GBDJ01333029;XM_005400945;XM_013522907;XM_013522908;XM_013522909 XP_005401002;XP_013378361;XP_013378362;XP_013378363 MODEL 9043490 protein-coding Brsk1 BR serine/threonine kinase 1 ENCODES a protein that exhibits gamma-tubulin binding (ortholog); magnesium ion binding (ortholog); molecular function inhibitor activity (ortholog); INVOLVED IN associative learning (ortholog); axonogenesis (ortholog); centrosome duplication (ortholog); FOUND IN centrosome (ortholog); cholinergic synapse (ortholog); cytoplasm (ortholog) NW_004955567 924728 943092 - 102027122 AGCD01074446;AGCD01074447;GBCE01016557;GBDJ01062535;XM_013509249 XP_013364703 MODEL 8909809 protein-coding Prdm10 PR/SET domain 10 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Birt-Hogg-Dube syndrome (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955412 30855909 30929998 - 102020099 AGCD01013312;AGCD01013313;AGCD01013314;AGCD01013315;AGCD01013316;GBDF01162914;GBDK01038990;XM_013511217 XP_013366671 MODEL 8811756 pseudo LOC102027248 elongation factor 1-alpha 1 pseudogene NW_004955583 7796 8477 + 102027248 AGCD01075789 MODEL 8809253 protein-coding Prr14 proline rich 14 FOUND IN chromosome (ortholog); nuclear lamina (ortholog); nucleoplasm (ortholog) NW_004955493 7512420 7518310 + 102016718 AGCD01061196;GBDF01043185;XM_005405264;XM_005405266;XM_013504762 XP_005405321;XP_005405323;XP_013360216 MODEL 8789854 ncrna LOC102011132 uncharacterized LOC102011132 NW_004955424 5106865 5118485 + 102011132 AGCD01024384;GBDF01016619;XR_261042 MODEL 8786913 protein-coding Rad1 RAD1 checkpoint DNA exonuclease INVOLVED IN cellular response to ionizing radiation (ortholog); DNA damage checkpoint signaling (ortholog); meiotic recombination checkpoint signaling (ortholog); FOUND IN checkpoint clamp complex (ortholog); chromosome (ortholog); nucleoplasm (ortholog) NW_004955426 20035605 20042340 - 102005730 AGCD01026560;GBCB01073528;XM_005386188;XM_005386189;XM_005386190;XM_013514969;XM_013514970;XM_013514971 XP_005386245;XP_005386246;XP_005386247;XP_013370423;XP_013370424;XP_013370425 MODEL 126903055 snorna SNORA5A small nucleolar RNA, H/ACA box 5A 8949032 protein-coding Tox2 TOX high mobility group box family member 2 ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN female gonad development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); response to gonadotropin (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955445 13210606 13343344 - 102023539 AGCD01039770;AGCD01039771;GBDJ01115968;XM_005392491;XM_005392492;XM_013518387;XM_013518388;XM_013518389 XP_005392548;XP_005392549;XP_013373841;XP_013373842;XP_013373843 MODEL 8814984 protein-coding Ppef1 protein phosphatase with EF-hand domain 1 ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); positive regulation of proteasomal protein catabolic process (ortholog) NW_004955586 597620 761433 - 102007831 AGCD01076035;AGCD01076036;AGCD01076037;AGCD01076038;AGCD01076039;AGCD01076040;AGCD01076041;AGCD01076042;AGCD01076043;AGCD01076044;GBDF01194348;XM_005414441;XM_013509899;XM_013509900;XM_013509901 XP_005414498;XP_013365353;XP_013365354;XP_013365355 MODEL 8948445 pseudo LOC102025882 prefoldin subunit 6 pseudogene NW_004955462 4270597 4271256 + 102025882 AGCD01049218;XM_005398149 MODEL 8881578 protein-coding Pax6 paired box 6 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); co-SMAD binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); astrocyte differentiation (ortholog); axon guidance (ortholog); ASSOCIATED WITH aniridia (ortholog); aniridia 1 (ortholog); Anophthalmia (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955476 10058979 10074668 - 102024457 AGCD01055407;GBBH01094369;XM_005401770;XM_013502938;XM_013502939 XP_005401827;XP_013358392;XP_013358393 MODEL 8737531 protein-coding LOC102008486 vomeronasal type-1 receptor 4-like NW_004955603 3670 4617 + 102008486 AGCD01076801;XM_005414840 XP_005414897 MODEL 8887064 protein-coding LOC102010758 vomeronasal type-1 receptor 3-like NW_004955603 530648 531616 + 102010758 AGCD01076850;XM_005414847 XP_005414904 MODEL 9061320 protein-coding Rundc1 RUN domain containing 1 INVOLVED IN in utero embryonic development (ortholog); ASSOCIATED WITH prostate cancer (ortholog) NW_004955451 16777348 16784876 + 102003510 AGCD01043706;AGCD01043707;GBCE01186563;GBDI01219560;XM_013519241 XP_013374695 MODEL 8699652 protein-coding Lig1 DNA ligase 1 ENCODES a protein that exhibits DNA ligase activity (ortholog); INVOLVED IN base-excision repair (ortholog); DNA repair (ortholog); DNA replication (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH epilepsy with generalized tonic-clonic seizures (ortholog); immunodeficiency 96 (ortholog); inherited metabolic disorder (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955609 118442 160009 + 102008805 AGCD01077052;GBDF01051840;XM_005414919;XM_005414920;XM_005414923 XP_005414976;XP_005414977;XP_005414980 MODEL 8959158 protein-coding Pspc1 paraspeckle component 1 ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); membraneless organelle assembly (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN fibrillar center (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955497 574678 641885 - 102006258 AGCD01062423;AGCD01062424;AGCD01062425;AGCD01062426;GBCQ01068863;GBDF01053680;XM_005406291 XP_005406348 MODEL 8761287 protein-coding Slc52a3 solute carrier family 52 member 3 ENCODES a protein that exhibits riboflavin transmembrane transporter activity (ortholog); INVOLVED IN cellular response to heat (ortholog); riboflavin transport (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH Auditory Neuropathy (ortholog); Brown-Vialetto-Van Laere syndrome (ortholog); Brown-Vialetto-Van Laere syndrome 1 (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); nuclear membrane (ortholog) NW_004955596 48463 60239 - 102008045 AGCD01076504;GBCE01171650;GBCQ01179604;XM_005414682 XP_005414739 MODEL 8729156 protein-coding LOC102019223 endothelial transcription factor GATA-2 NW_004955402 10652635 10674280 + 102019223 AGCD01000284;AGCD01000285;GBDI01323443;GBDK01085852;XM_013522231 XP_013377685 MODEL 8820675 protein-coding Sntn sentan, cilia apical structure protein FOUND IN cilium (ortholog) NW_004955517 2210700 2233760 - 102023184 AGCD01067619;AGCD01067620;AGCD01067621;AGCD01067622;GBBH01031963;XM_013506948 XP_013362402 MODEL 8794718 protein-coding Wdr1 WD repeat domain 1 ENCODES a protein that exhibits actin filament binding (ortholog); actin severing activator activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); apical junction assembly (ortholog); cortical cytoskeleton organization (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); autosomal dominant intellectual developmental disorder 61 (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); anchoring junction (ortholog); cell junction (ortholog) NW_004955549 2640193 2674818 + 102012586 AGCD01072480;GBCQ01034784;GBDJ01009712;XM_013508539 XP_013363993 MODEL 9015116 protein-coding Rbbp7 RB binding protein 7, chromatin remodeling factor ENCODES a protein that exhibits histone binding (ortholog); RNA binding (ortholog); INVOLVED IN cellular heat acclimation (ortholog); chromatin remodeling (ortholog); negative regulation of cell growth (ortholog); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; Hedgehog signaling pathway; ISWI family mediated chromatin remodeling pathway; ASSOCIATED WITH autistic disorder (ortholog); X-linked spermatogenic failure 9 (ortholog); FOUND IN ATPase complex (ortholog); chromosome, telomeric region (ortholog); ESC/E(Z) complex (ortholog) NW_004955519 1460199 1482699 + 102006943 AGCD01067893;GBDF01080619;XM_005409144 XP_005409201 MODEL 8827095 protein-coding Pxdnl peroxidasin like FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); extracellular region (ortholog) NW_004955454 10993294 11442351 - 102003091 AGCD01045376;AGCD01045377;AGCD01045378;AGCD01045379;AGCD01045380;AGCD01045381;AGCD01045382;AGCD01045383;AGCD01045384;AGCD01045385;AGCD01045386;AGCD01045387;AGCD01045388;GBDI01306602;XM_013520015 XP_013375469 MODEL 8725998 ncrna LOC102006589 uncharacterized LOC102006589 NW_004955495 6548347 6552199 + 102006589 AGCD01062085;GBDF01303427;XR_264164 MODEL 8955397 protein-coding Rin2 Ras and Rab interactor 2 INVOLVED IN positive regulation of endothelial cell migration (ortholog); positive regulation of endothelial cell-matrix adhesion (ortholog); positive regulation of vasculogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Macrocephaly, Alopecia, Cutis Laxa, and Scoliosis (ortholog) NW_004955415 27953670 28130122 + 102020331 AGCD01016636;AGCD01016637;GBDF01062630;XM_013512179;XM_013512180;XM_013512181;XM_013512182;XM_013512183;XM_013512184 XP_013367633;XP_013367634;XP_013367635;XP_013367636;XP_013367637;XP_013367638 MODEL 8881083 pseudo LOC102003752 26S protease regulatory subunit 4 pseudogene NW_004955469 9387077 9396448 - 102003752 AGCD01052500;AGCD01052501 MODEL 8834174 ncrna LOC102027250 uncharacterized LOC102027250 NW_004955590 731416 752032 - 102027250 AGCD01076218;AGCD01076219;GBDF01042511;XR_001232536;XR_265125;XR_265126 MODEL 39133311 snrna U4 U4 spliceosomal RNA 39132836 snorna SNORA5C small nucleolar RNA, H/ACA box 5C 8837894 protein-coding Trim40 tripartite motif containing 40 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of protein catabolic process (ortholog); negative regulation of protein localization to nucleus (ortholog); ASSOCIATED WITH irritant dermatitis (ortholog); FOUND IN IkappaB kinase complex (ortholog) NW_004955583 242054 260565 + 102029573 AGCD01075807;AGCD01075808;GBDF01180385;XM_005414342 XP_005414399 MODEL 8791025 pseudo LOC102005525 protein kinase C iota type pseudogene NW_004955445 18126528 18128715 + 102005525 AGCD01039898 MODEL 8976857 pseudo LOC102009597 mitochondrial fission factor-like NW_004955414 11395994 11396843 - 102009597 AGCD01015082 MODEL 8729759 protein-coding LOC102018782 zinc finger protein 709-like NW_004955569 1517762 1537562 + 102018782 AGCD01074661;AGCD01074662;AGCD01074663;AGCD01074664;GBDF01080575;XM_013509365 XP_013364819 MODEL 8985966 ncrna LOC102028595 uncharacterized LOC102028595 NW_004955402 10461473 10469474 - 102028595 AGCD01000271;GBCB01024822;XR_001236488;XR_001236495;XR_259047 MODEL 8964967 protein-coding Thoc7 THO complex subunit 7 INVOLVED IN mRNA export from nucleus (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955517 2037406 2046694 + 102020368 AGCD01067614;AGCD01067615;GBDF01082152;GBDI01068250;XM_013506938 XP_013362392 MODEL 8845462 pseudo LOC102030376 volume-regulated anion channel subunit LRRC8D-like NW_004955451 29879 44586 + 102030376 AGCD01042906;AGCD01042907;AGCD01042908 MODEL 8998604 protein-coding Retsat retinol saturase ENCODES a protein that exhibits all-trans-retinol 13,14-reductase activity (ortholog); INVOLVED IN retinoid metabolic process (ortholog); retinol metabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH Simpson-Golabi-Behmel syndrome type 1 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); nuclear membrane (ortholog); nuclear outer membrane (ortholog) NW_004955424 2107602 2122029 + 102004946 AGCD01024262;AGCD01024263;GBDF01226131;XM_005385436 XP_005385493 MODEL 8809183 protein-coding Eml2 EMAP like 2 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); microtubule binding (ortholog); tubulin binding (ortholog); INVOLVED IN negative regulation of microtubule polymerization (ortholog); regulation of microtubule nucleation (ortholog); FOUND IN mitotic spindle (ortholog) NW_004955574 106788 135289 - 102014957 AGCD01075084;AGCD01075085;GBDF01043668;XM_005413789 XP_005413846 MODEL 8896196 protein-coding LOC102026245 olfactory receptor 9Q2 NW_004955511 2983636 2984709 + 102026245 AGCD01066437;GBDF01209286;XM_013506418 XP_013361872 MODEL 8709179 protein-coding Plcg2 phospholipase C gamma 2 ENCODES a protein that exhibits phosphatidylinositol-4,5-bisphosphate phospholipase C activity (ortholog); phosphorylation-dependent protein binding (ortholog); phosphotyrosine residue binding (ortholog); INVOLVED IN activation of store-operated calcium channel activity (ortholog); antifungal innate immune response (ortholog); B cell activation (ortholog); PARTICIPATES IN erythropoietin signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); autoinflammation, antibody deficiency, and immune dysregulation syndrome (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intracellular vesicle (ortholog) NW_004955522 4352890 4480735 + 102007928 AGCD01068416;AGCD01068417;AGCD01068418;AGCD01068419;AGCD01068420;AGCD01068421;AGCD01068422;GBCE01092331;GBDJ01422643;XM_013507097 XP_013362551 MODEL 8728966 pseudo LOC102010348 zinc finger CCHC domain-containing protein 8-like NW_004955411 3492784 3499691 - 102010348 AGCD01011553 MODEL 8834072 protein-coding Pdgfd platelet derived growth factor D INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH atherosclerosis (ortholog); Bone Metastasis (ortholog); Cardiac Allograft Vasculopathy (ortholog); FOUND IN extracellular region (ortholog) NW_004955412 6868995 7093353 - 102021538 AGCD01012683;AGCD01012684;AGCD01012685;AGCD01012686;AGCD01012687;GBCE01077565;XM_005377998;XM_005377999;XM_013511230;XM_013511231 XP_005378055;XP_005378056;XP_013366684;XP_013366685 MODEL 8966970 protein-coding Prdm11 PR/SET domain 11 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN negative regulation of cell growth (ortholog); negative regulation of DNA-templated transcription (ortholog); positive regulation of DNA-templated transcription (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955422 2616410 2655381 - 102021354 AGCD01022487;AGCD01022488;GBCE01108537;XM_005384073 XP_005384130 MODEL 8811617 protein-coding LOC102023452 40S ribosomal protein S27-like NW_004955465 9447585 9447842 - 102023452 AGCD01050492;XM_005398988 XP_005399045 MODEL 9002652 pseudo LOC102024469 E3 ubiquitin-protein ligase RLIM pseudogene NW_004955420 13292515 13293631 + 102024469 AGCD01020919 MODEL 8756665 ncrna LOC102027941 uncharacterized LOC102027941 NW_004955407 8811638 8828000 + 102027941 AGCD01007021;AGCD01007022;GBDF01210027;XR_259560 MODEL 8987484 protein-coding Slc15a5 solute carrier family 15 member 5 NW_004955413 12832193 12924836 - 102007323 AGCD01014001;AGCD01014002;AGCD01014003;AGCD01014004;XM_005379024 XP_005379081 MODEL 10285820 ncrna LOC106148193 uncharacterized LOC106148193 NW_004955417 15844959 15848237 + 106148193 AGCD01018244;XR_001233410 MODEL 8771190 protein-coding Rad17 RAD17 checkpoint clamp loader component ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); INVOLVED IN DNA damage response (ortholog); mitotic intra-S DNA damage checkpoint signaling (ortholog); negative regulation of DNA replication (ortholog); FOUND IN chromosome (ortholog); chromosome, telomeric region (ortholog); nucleolus (ortholog) NW_004955575 78686 115072 + 102021496 AGCD01075201;AGCD01075202;GBDF01118718;XM_005413904;XM_005413905;XM_005413906;XM_013509598;XM_013509600 XP_005413961;XP_005413962;XP_005413963;XP_013365052;XP_013365054 MODEL 8846337 ncrna LOC102006975 uncharacterized LOC102006975 NW_004955405 613272 642517 + 102006975 AGCD01004581;AGCD01004582;GBDF01305850;XR_001235174;XR_001235177;XR_259353;XR_259354 MODEL 8775166 ncrna LOC102012730 uncharacterized LOC102012730 NW_004955407 18730128 18738547 + 102012730 AGCD01007275;GBDF01261213;XR_259575 MODEL 8954010 ncrna LOC102025894 uncharacterized LOC102025894 NW_004955413 11432189 11457574 + 102025894 AGCD01013962;GBCB01074027;XR_001232974;XR_001232975 MODEL 8919179 protein-coding Tox3 TOX high mobility group box family member 3 ENCODES a protein that exhibits chromatin binding (ortholog); phosphoprotein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); negative regulation of neuron apoptotic process (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Cleft Lip with or without Cleft Palate, Nonsyndromic, 7 (ortholog); Liver Neoplasms (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955433 10328886 10426540 - 102022419 AGCD01031627;GBDI01013832;GBDI01325258;XM_005388284;XM_005388285 XP_005388341;XP_005388342 MODEL 10370157 pseudo LOC106147094 protein kinase C iota type pseudogene NW_004955518 2690856 2692589 + 106147094 AGCD01067783 MODEL 8974878 protein-coding Pax7 paired box 7 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN cartilage development (ortholog); chromatin remodeling (ortholog); dorsal/ventral neural tube patterning (ortholog); ASSOCIATED WITH alveolar rhabdomyosarcoma (ortholog); congenital myopathy 19 (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN nucleus (ortholog) NW_004955527 474450 573869 - 102018762 AGCD01069385;GBDI01086234;XM_005409802;XM_005409803;XM_005409804 XP_005409859;XP_005409860;XP_005409861 MODEL 39133312 snrna U4 U4 spliceosomal RNA 9048585 ncrna LOC102010759 uncharacterized LOC102010759 NW_004955403 1971342 1976194 - 102010759 AGCD01001728;GBDF01124321;XR_259134 MODEL 8880268 protein-coding Brsk2 BR serine/threonine kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); ATPase binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); axonogenesis (ortholog); ERAD pathway (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 11 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); distal axon (ortholog) NW_004955476 10911515 10951544 - 102003123 AGCD01055431;GBDF01194489;XM_013502987;XM_013502988;XM_013502989;XM_013502990;XM_013502991;XM_013502992;XM_013502993;XM_013502994;XR_001230801 XP_013358441;XP_013358442;XP_013358443;XP_013358444;XP_013358445;XP_013358446;XP_013358447;XP_013358448 MODEL 39133309 snorna SNORA6 Small nucleolar RNA SNORA62/SNORA6 family 8965390 protein-coding Smc1a structural maintenance of chromosomes 1A ENCODES a protein that exhibits chromatin binding (ortholog); mediator complex binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN meiotic cell cycle (ortholog); mitotic spindle assembly (ortholog); response to DNA damage checkpoint signaling (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); calvarial doughnut lesions with bone fragility (ortholog); congenital variant of Rett syndrome (ortholog); FOUND IN cohesin complex (ortholog); cytosol (ortholog); kinetochore (ortholog) NW_004955475 421472 468286 - 102014447 AGCD01054690;AGCD01054691;AGCD01054692;GBDF01222516;XM_005401492;XM_005401493;XM_013502820 XP_005401549;XP_005401550;XP_013358274 MODEL 9006739 pseudo LOC102028596 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like NW_004955583 64924 66142 - 102028596 AGCD01075793 MODEL 8908957 ncrna LOC102011133 uncharacterized LOC102011133 NW_004955496 4331938 4345273 + 102011133 AGCD01062320;GBDF01074903;XR_264176 MODEL 8899332 protein-coding Thop1 thimet oligopeptidase 1 ENCODES a protein that exhibits metalloendopeptidase activity (ortholog); peptidase activity (ortholog); peptide binding (ortholog); INVOLVED IN intracellular signal transduction (ortholog); peptide catabolic process (ortholog); peptide metabolic process (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955495 5055389 5070710 + 102019711 AGCD01061973;GBDF01128633;XM_005405835 XP_005405892 MODEL 8779368 ncrna LOC102017636 uncharacterized LOC102017636 NW_004955459 2075530 2078673 + 102017636 AGCD01047982;GBCQ01045566;XR_263005 MODEL 8700554 pseudo LOC102011543 DCN1-like protein 1 pseudogene NW_004955484 8471459 8472600 - 102011543 AGCD01058384 MODEL 8916684 protein-coding Plch1 phospholipase C eta 1 ENCODES a protein that exhibits lysophospholipase C activity (ortholog); phosphatidylinositol-4,5-bisphosphate phospholipase C activity (ortholog); INVOLVED IN phosphatidylinositol-mediated signaling (ortholog); ASSOCIATED WITH Holoprosencephaly 14 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955448 6588885 6815087 - 102015257 AGCD01041393;GBDJ01114723;XM_005393067;XM_013518675;XM_013518676;XM_013518677 XP_005393124;XP_013374129;XP_013374130;XP_013374131 MODEL 8977284 protein-coding LOC102026247 olfactory receptor 4C16-like NW_004955511 285111 306581 + 102026247 AGCD01066326;AGCD01066327;GBDF01187873;XM_005408186;XR_001231673;XR_001231674;XR_001231675 XP_005408243 MODEL 8979331 protein-coding Prr14l proline rich 14 like NW_004955455 5802877 5875442 - 102015282 AGCD01045753;AGCD01045754;AGCD01045755;AGCD01045756;AGCD01045757;GBDF01253157;XM_005396334;XM_005396335;XM_013520339;XM_013520340;XM_013520341;XM_013520342;XM_013520343;XM_013520344 XP_005396391;XP_005396392;XP_013375793;XP_013375794;XP_013375795;XP_013375796;XP_013375797;XP_013375798 MODEL 8934202 protein-coding Wdr11 WD repeat domain 11 INVOLVED IN cilium assembly (ortholog); head development (ortholog); heart development (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Autosomal Recessive Intellectual Developmental Disorder 78 (ortholog); CHARGE syndrome (ortholog); FOUND IN axoneme (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955551 1733079 1788354 + 102015571 AGCD01072698;AGCD01072699;GBDF01220834;XM_005412176 XP_005412233 MODEL 8732770 protein-coding Sebox SEBOX homeobox INVOLVED IN embryo development ending in birth or egg hatching (ortholog); oogenesis (ortholog) NW_004955481 4768121 4770611 + 102005377 AGCD01056951;GBDI01104261;XM_005415252 XP_005415309 MODEL 8939979 protein-coding LOC102028949 olfactory receptor 6N1 NW_004955468 10633532 10634470 - 102028949 AGCD01052093;XM_005400159 XP_005400216 MODEL 8717181 protein-coding LOC102008487 actin cytoskeleton-regulatory complex protein pan1-like NW_004955451 2446558 2456251 - 102008487 AGCD01043009;GBBH01184630;XM_013519305 XP_013374759 MODEL 8990314 protein-coding Prdm12 PR/SET domain 12 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN detection of temperature stimulus involved in sensory perception of pain (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); neurogenesis (ortholog); ASSOCIATED WITH Congenital Pain Insensitivity (ortholog); genetic disease (ortholog); hereditary sensory and autonomic neuropathy type 8 (ortholog); FOUND IN nucleus (ortholog) NW_004955513 612566 627848 + 102021268 AGCD01066827;AGCD01066828;GBDF01167611;XM_005408635 XP_005408692 MODEL 9019384 ncrna LOC102015713 uncharacterized LOC102015713 NW_004955414 23873136 23879589 - 102015713 AGCD01015527;GBDI01164401;XR_001233159;XR_260193 MODEL 8725840 protein-coding Serpini2 serpin family I member 2 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); ASSOCIATED WITH Shwachman-Diamond syndrome (ortholog) NW_004955448 16679885 16694484 - 102027247 AGCD01041701;GBBH01104730;XM_005393166 XP_005393223 MODEL 8709888 ncrna LOC102010349 uncharacterized LOC102010349 NW_004955465 9065822 9075222 + 102010349 AGCD01050484;GBDK01032471;XR_001236720;XR_263253 MODEL 8708231 protein-coding Psph phosphoserine phosphatase ENCODES a protein that exhibits identical protein binding (ortholog); L-phosphoserine phosphatase activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); L-serine biosynthetic process (ortholog); L-serine metabolic process (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH amelogenesis imperfecta (ortholog); amino acid metabolic disorder (ortholog); epilepsy (ortholog); FOUND IN cytosol (ortholog) NW_004955456 8198739 8212111 - 102029365 AGCD01046460;AGCD01046461;GBDF01278340;XM_005396697;XM_013520546 XP_005396754;XP_013376000 MODEL 8820231 protein-coding Slc5a1 solute carrier family 5 member 1 ENCODES a protein that exhibits alpha-glucoside transmembrane transporter activity (ortholog); D-glucose transmembrane transporter activity (ortholog); D-glucose:sodium symporter activity (ortholog); INVOLVED IN alpha-glucoside transport (ortholog); carbohydrate utilization (ortholog); chloride transmembrane transport (ortholog); PARTICIPATES IN lactose degradation pathway; sodium-glucose cotransporter mediated glucose transport pathway; trehalose degradation pathway; ASSOCIATED WITH genetic disease (ortholog); glucose-galactose malabsorption (ortholog); Malabsorption Syndromes (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog) NW_004955455 6158773 6236950 + 102006541 AGCD01045776;AGCD01045777;AGCD01045778;AGCD01045779;AGCD01045780;AGCD01045781;AGCD01045782;GBDF01276541;XM_013520495 XP_013375949 MODEL 8741319 protein-coding Rbbp8 RB binding protein 8, endonuclease ENCODES a protein that exhibits damaged DNA binding (ortholog); identical protein binding (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); DNA double-strand break processing involved in repair via single-strand annealing (ortholog); DNA strand resection involved in replication fork processing (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; homologous recombination pathway of double-strand break repair; non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); microcephaly (ortholog); FOUND IN BRCA1-C complex (ortholog); chromosome (ortholog); nucleoplasm (ortholog) NW_004955402 11245857 11331872 + 102030137 AGCD01000298;AGCD01000299;GBDK01233448;XM_005372692;XM_005372693;XM_005372694;XM_013503320 XP_005372749;XP_005372750;XP_005372751;XP_013358774 MODEL 10238320 ncrna LOC106149936 uncharacterized LOC106149936 NW_004955458 13881726 13893278 + 106149936 AGCD01047815;GBDF01247795;XR_001236433;XR_001236434 MODEL 8776131 pseudo LOC102006591 mimitin, mitochondrial pseudogene NW_004955423 25450663 25451169 - 102006591 AGCD01024075 MODEL 9035075 ncrna LOC102027252 uncharacterized LOC102027252 NW_004955450 8997279 9002931 - 102027252 AGCD01042581;AGCD01042582;GBDF01208608;XR_001235849;XR_262541 MODEL 8892948 protein-coding LOC102006979 keratin-associated protein 20-2-like NW_004955407 30156701 30156859 + 102006979 AGCD01007628;XM_005375640 XP_005375697 MODEL 8766049 protein-coding LOC102025898 T-cell surface glycoprotein CD1e, membrane-associated-like NW_004955468 10215831 10218600 + 102025898 AGCD01052073;XM_005400312 XP_005400369 MODEL 8754601 protein-coding Rad18 RAD18 E3 ubiquitin protein ligase ENCODES a protein that exhibits double-stranded DNA binding (ortholog); identical protein binding (ortholog); polyubiquitin modification-dependent protein binding (ortholog); INVOLVED IN DNA damage response (ortholog); negative regulation of DNA recombination (ortholog); positive regulation of chromosome segregation (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); nuclear body (ortholog) NW_004955561 463586 602354 - 102027580 AGCD01073822;AGCD01073823;GBDK01117276;XM_013509104;XM_013509105;XM_013509106;XM_013509107;XM_013509108;XM_013509110 XP_013364558;XP_013364559;XP_013364560;XP_013364561;XP_013364562;XP_013364564 MODEL 9053322 protein-coding Trim41 tripartite motif containing 41 ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to muramyl dipeptide (ortholog); defense response to virus (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); fibrillar center (ortholog) NW_004955530 84683 95835 - 102004002 AGCD01069830;GBCB01060416;XM_005410099 XP_005410156 MODEL 8910506 gene LOC102012734 Ig lambda-2 chain V region-like NW_004955455 6800743 6801214 + 102012734 AGCD01045813 MODEL 8863133 protein-coding Rundc3a RUN domain containing 3A INVOLVED IN cGMP metabolic process (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955451 17348822 17352271 + 102006736 AGCD01043743;GBDF01014728;GBDK01247607;XM_013519260 XP_013374714 MODEL 8852351 protein-coding LOC102005530 arylacetamide deacetylase-like NW_004955448 2938773 2958946 + 102005530 AGCD01041296;AGCD01041297;AGCD01041298;AGCD01041299;GBCQ01129513;XM_005393035 XP_005393092 MODEL 8895275 protein-coding Lig3 DNA ligase 3 ENCODES a protein that exhibits DNA ligase (ATP) activity (ortholog); DNA ligase activity (ortholog); INVOLVED IN base-excision repair (ortholog); double-strand break repair (ortholog); double-strand break repair via alternative nonhomologous end joining (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH Cardiac Arrhythmias (ortholog); genetic disease (ortholog); middle cerebral artery infarction (ortholog); FOUND IN condensed nuclear chromosome (ortholog); DNA ligase III-XRCC1 complex (ortholog); mitochondrion (ortholog) NW_004955481 9696050 9716154 + 102006246 AGCD01057112;GBCB01039491;GBDF01007194;XM_013503401 XP_013358855 MODEL 39133313 snrna U4 U4 spliceosomal RNA 9060583 protein-coding LOC102030381 E3 ubiquitin-protein ligase RNF13-like NW_004955405 36150042 36154832 - 102030381 AGCD01005411;XM_013519516 XP_013374970 MODEL 8957477 protein-coding LOC102019224 zinc finger protein 627-like NW_004955599 9018 47613 + 102019224 AGCD01076609;AGCD01076610;AGCD01076611;AGCD01076612;AGCD01076613;AGCD01076614;GBCQ01009278;XM_013510036 XP_013365490 MODEL 8767863 protein-coding Pax8 paired box 8 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); cell differentiation (ortholog); cellular response to gonadotropin stimulus (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); congenital hypothyroidism (ortholog); congenital nongoitrous hypothyroidism 2 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955470 1016226 1072643 + 102018915 AGCD01052624;AGCD01052625;GBCQ01000755;XM_005400576;XM_005400577;XM_005400581 XP_005400633;XP_005400634;XP_005400638 MODEL 8869505 protein-coding Pdgfra platelet derived growth factor receptor alpha ENCODES a protein that exhibits phosphatidylinositol 3-kinase binding (ortholog); phospholipase C activator activity (ortholog); platelet-derived growth factor alpha-receptor activity (ortholog); INVOLVED IN adrenal gland development (ortholog); anatomical structure morphogenesis (ortholog); animal organ morphogenesis (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH B-lymphoblastic leukemia/lymphoma (ortholog); Brain Injuries (ortholog); brain stem glioma (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); cilium (ortholog) NW_004955447 16570652 16613410 - 102009436 AGCD01041092;AGCD01041093;AGCD01041094;GBDJ01131981;XM_005392898;XM_005392899 XP_005392955;XP_005392956 MODEL 39131715 snorna SNORA60 Small nucleolar RNA SNORA71 8935846 protein-coding LOC102015714 olfactory receptor 2AT4-like NW_004955414 16679287 16683630 + 102015714 AGCD01015222;XM_005380450 XP_005380507 MODEL 8940667 protein-coding LOC102003753 olfactory receptor 51L1-like NW_004955414 21288601 21289554 + 102003753 AGCD01015411;XM_005380082 XP_005380139 MODEL 8913371 ncrna LOC102011553 uncharacterized LOC102011553 NW_004955421 24665699 24694762 - 102011553 AGCD01022221;GBDF01076912;XR_260823 MODEL 8920897 protein-coding Sertad1 SERTA domain containing 1 INVOLVED IN negative regulation of cell growth (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955578 848920 852193 + 102012705 AGCD01075500;GBDF01188769;XM_005414046;XM_013509664 XP_005414103;XP_013365118 MODEL 8814255 protein-coding LOC102009604 laforin NW_004955477 658249 660233 - 102009604 AGCD01055492;AGCD01055493;GBDJ01162178;XM_005402077 XP_005402134 MODEL 10240066 ncrna LOC106148194 uncharacterized LOC106148194 NW_004955417 23618096 23623832 - 106148194 AGCD01018443;XR_001233412 MODEL 10116908 protein-coding LOC106147095 uncharacterized LOC106147095 NW_004955518 5049477 5051023 - 106147095 AGCD01067851;XM_013506954 XP_013362408 MODEL 8782728 protein-coding Plch2 phospholipase C eta 2 ENCODES a protein that exhibits C-type glycerophospholipase activity (ortholog); phosphatidylinositol-4,5-bisphosphate phospholipase C activity (ortholog); INVOLVED IN phosphatidylinositol metabolic process (ortholog); phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process (ortholog); FOUND IN plasma membrane (ortholog) NW_004955486 8717799 8785144 - 102007236 AGCD01059155;AGCD01059156;GBBH01188538;XM_013504169;XM_013504170;XM_013504172;XM_013504173;XM_013504174 XP_013359623;XP_013359624;XP_013359626;XP_013359627;XP_013359628 MODEL 8933218 protein-coding Rev1 REV1 DNA directed polymerase ENCODES a protein that exhibits deoxycytidyl transferase activity (ortholog); DNA binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN DNA biosynthetic process (ortholog); DNA repair (ortholog); error-prone translesion synthesis (ortholog); FOUND IN nuclear replication fork (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955470 5677222 5738362 - 102013164 AGCD01052758;AGCD01052759;GBDJ01313280;XM_005400749;XM_005400750;XM_005400751 XP_005400806;XP_005400807;XP_005400808 MODEL 8849879 protein-coding LOC102010760 retinitis pigmentosa 9 protein NW_004955617 180456 193992 - 102010760 AGCD01077272;AGCD01077273;GBCE01004432;GBCE01098928;XM_013510144 XP_013365598 MODEL 8725557 protein-coding Eml3 EMAP like 3 INVOLVED IN mitotic metaphase chromosome alignment (ortholog); regulation of mitotic spindle assembly (ortholog); FOUND IN cytoplasm (ortholog); microtubule cytoskeleton (ortholog); midbody (ortholog) NW_004955599 580203 587268 + 102015584 AGCD01076660;GBCE01002611;XM_013510059;XM_013510060 XP_013365513;XP_013365514 MODEL 8886726 protein-coding Brwd1 bromodomain and WD repeat domain containing 1 INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); male infertility (ortholog); oligospermia (ortholog); FOUND IN axoneme (ortholog); motile cilium (ortholog); nucleolus (ortholog) NW_004955407 38003386 38107958 - 102022466 AGCD01007792;AGCD01007793;AGCD01007794;GBCB01009000;GBDJ01213321;XM_013504832;XM_013504835;XM_013504839 XP_013360286;XP_013360289;XP_013360293 MODEL 8903690 protein-coding Snu13 small nuclear ribonucleoprotein 13 ENCODES a protein that exhibits ATPase binding (ortholog); box C/D sno(s)RNA binding (ortholog); snoRNA binding (ortholog); INVOLVED IN box C/D snoRNP assembly (ortholog); mRNA splicing, via spliceosome (ortholog); ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; spliceosome pathway; FOUND IN box C/D methylation guide snoRNP complex (ortholog); dense fibrillar component (ortholog); nucleolus (ortholog) NW_004955413 27160985 27172648 - 102023018 AGCD01014496;AGCD01014497;GBDF01002032;XM_005379365 XP_005379422 MODEL 8863566 ncrna LOC102028598 uncharacterized LOC102028598 NW_004955591 296239 317221 + 102028598 AGCD01076253;GBDJ01125536;XR_265127 MODEL 8807012 ncrna LOC102024470 uncharacterized LOC102024470 NW_004955421 22223831 22235690 + 102024470 AGCD01022128;GBCB01111021;XR_260814 MODEL 8713662 pseudo LOC102023454 ferritin heavy chain-like NW_004955466 10676155 10735470 - 102023454 AGCD01051071;AGCD01051072;AGCD01051073;XR_263303 MODEL 8815370 protein-coding LOC102025899 olfactory receptor 51G2-like NW_004955414 20989645 20990598 + 102025899 AGCD01015399;XM_005380070 XP_005380127 MODEL 8994615 ncrna LOC102027943 uncharacterized LOC102027943 NW_004955407 41165105 41167235 + 102027943 AGCD01007859;GBCQ01122385;XR_259638 MODEL 8965871 protein-coding Pxk PX domain containing serine/threonine kinase like INVOLVED IN inflammatory response (ortholog); modulation of chemical synaptic transmission (ortholog); negative regulation of ATP-dependent activity (ortholog); ASSOCIATED WITH rheumatoid arthritis (ortholog); systemic lupus erythematosus (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955430 1714208 1780674 - 102008133 AGCD01029132;AGCD01029133;GBCB01056666;XM_005387294;XM_005387295;XM_013515643;XM_013515644;XM_013515645;XM_013515646;XM_013515647;XM_013515648;XM_013515649 XP_005387351;XP_005387352;XP_013371097;XP_013371098;XP_013371099;XP_013371100;XP_013371101;XP_013371102;XP_013371103 MODEL 39133316 snrna U4 U4 spliceosomal RNA 8982059 ncrna LOC102026248 uncharacterized LOC102026248 NW_004955431 16503408 16509969 + 102026248 AGCD01030380;GBDF01039485;XR_261483 MODEL 8813230 protein-coding Rin3 Ras and Rab interactor 3 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN negative regulation of mast cell chemotaxis (ortholog); negative regulation of receptor internalization (ortholog); regulation of vesicle size (ortholog); ASSOCIATED WITH lung adenocarcinoma (ortholog); Paget's disease of bone (ortholog); squamous cell carcinoma (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955438 14777866 14898572 + 102027340 AGCD01035350;AGCD01035351;AGCD01035352;AGCD01035353;AGCD01035354;GBDF01041022;GBDJ01173811;XM_013517215 XP_013372669 MODEL 8997979 ncrna LOC102010354 uncharacterized LOC102010354 NW_004955468 803292 804816 + 102010354 AGCD01051739;GBDF01089481;XR_263369 MODEL 8742332 pseudo LOC102017637 RNA-binding protein 39 pseudogene NW_004955409 3013441 3014560 + 102017637 AGCD01009233 MODEL 8707178 protein-coding Slc16a1 solute carrier family 16 member 1 ENCODES a protein that exhibits carboxylic acid transmembrane transporter activity (ortholog); identical protein binding (ortholog); lactate transmembrane transporter activity (ortholog); INVOLVED IN behavioral response to nutrient (ortholog); carboxylic acid transmembrane transport (ortholog); centrosome cycle (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Colonic Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955435 16334382 16361737 - 102007930 AGCD01033319;GBDF01006604;XM_005388972;XM_005388973;XM_005388975 XP_005389029;XP_005389030;XP_005389032 MODEL 8977026 protein-coding LOC102015716 scavenger receptor cysteine-rich domain-containing protein SCART1-like NW_004955477 11165644 11181951 + 102015716 AGCD01055718;AGCD01055719;GBDI01371050;XM_013503025 XP_013358479 MODEL 8898374 protein-coding Pdgfrb platelet derived growth factor receptor beta ENCODES a protein that exhibits enzyme binding (ortholog); GTPase activator activity (ortholog); kinase activity (ortholog); INVOLVED IN adrenal gland development (ortholog); aorta morphogenesis (ortholog); blood vessel development (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH atherosclerosis (ortholog); autism spectrum disorder (ortholog); basal ganglia calcification (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955415 4365848 4403317 + 102018718 AGCD01015969;GBDJ01088291;XM_005380586;XM_013512215;XM_013512216 XP_005380643;XP_013367669;XP_013367670 MODEL 8799016 pseudo LOC102006594 tRNA methyltransferase 10 homolog A-like NW_004955425 7417174 7418366 + 102006594 AGCD01025385 MODEL 8916132 protein-coding Tox4 TOX high mobility group box family member 4 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN positive regulation of gluconeogenesis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription elongation by RNA polymerase II (ortholog); FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); PTW/PP1 phosphatase complex (ortholog) NW_004955550 2195710 2209729 + 102013344 AGCD01072611;GBDF01045487;XM_005412118;XM_013508582 XP_005412175;XP_013364036 MODEL 9065471 ncrna LOC102028956 uncharacterized LOC102028956 NW_004955472 9922932 9923554 - 102028956 AGCD01053699;GBDF01281481;XR_263561 MODEL 8800821 protein-coding LOC102018784 arylacetamide deacetylase-like NW_004955448 2910775 2917084 - 102018784 AGCD01041293;GBDJ01157315;XM_013518615 XP_013374069 MODEL 8882978 protein-coding Sec11a SEC11 homolog A, signal peptidase complex subunit ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); signal peptidase activity (ortholog); INVOLVED IN protein maturation (ortholog); protein processing (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); signal peptidase complex (ortholog) NW_004955416 14421985 14459233 + 102011310 AGCD01017264;AGCD01017265;AGCD01017266;AGCD01017267;AGCD01017268;AGCD01017269;AGCD01017270;GBDI01081430;XM_005381493;XM_013512510;XM_013512511 XP_005381550;XP_013367964;XP_013367965 MODEL 8952553 protein-coding Rbbp8nl RBBP8 N-terminal like ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog) NW_004955528 1641291 1655920 + 102027897 AGCD01069567;GBBH01026084;XM_005410020;XM_013507496;XM_013507497 XP_005410077;XP_013362950;XP_013362951 MODEL 8737230 protein-coding LOC102011555 probable inactive serine protease 58 NW_004955494 1266343 1273436 + 102011555 AGCD01061393;GBDF01081972;XM_005405395;XM_013504926 XP_005405452;XP_013360380 MODEL 8800297 protein-coding Smc1b structural maintenance of chromosomes 1B ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN meiotic cell cycle (ortholog); sister chromatid cohesion (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); myoepithelioma (ortholog); primary ovarian insufficiency 16 (ortholog); FOUND IN chromosome, centromeric region (ortholog); condensed nuclear chromosome (ortholog); lateral element (ortholog) NW_004955413 29709473 29765043 - 102005025 AGCD01014592;AGCD01014593;AGCD01014594;GBDF01007980;XM_005379490 XP_005379547 MODEL 8961756 protein-coding Sertad2 SERTA domain containing 2 ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN negative regulation of cell growth (ortholog); positive regulation of DNA-templated transcription (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955424 19683745 19797889 + 102007134 AGCD01024833;AGCD01024834;AGCD01024835;AGCD01024836;AGCD01024837;GBDK01430460;XM_005385696;XM_005385698 XP_005385753;XP_005385755 MODEL 8880990 protein-coding Rad21 RAD21 cohesin complex component ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor binding (ortholog); lncRNA binding (ortholog); INVOLVED IN chromatin looping (ortholog); negative regulation of G2/M transition of mitotic cell cycle (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH Cerebral Hemorrhage (ortholog); colorectal carcinoma (ortholog); Cornelia de Lange syndrome (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); chromosome, centromeric region (ortholog) NW_004955417 22941549 22966395 - 102030307 AGCD01018425;AGCD01018426;GBBH01088042;XM_005381898 XP_005381955 MODEL 9060925 protein-coding Thpo thrombopoietin ENCODES a protein that exhibits cytokine activity (ortholog); INVOLVED IN cell surface receptor signaling pathway via STAT (ortholog); megakaryocyte development (ortholog); megakaryocyte differentiation (ortholog); ASSOCIATED WITH aplastic anemia (ortholog); arteriosclerosis obliterans (ortholog); cardiomyopathy (ortholog); FOUND IN extracellular region (ortholog); signaling receptor complex (ortholog) NW_004955420 23120828 23128894 + 102017242 AGCD01021227;AGCD01021228;GBDJ01109659;XM_005383308;XM_005383309;XM_005383310;XM_013513327;XM_013513328;XM_013513329 XP_005383365;XP_005383366;XP_005383367;XP_013368781;XP_013368782;XP_013368783 MODEL 9042449 protein-coding LOC102011137 olfactory receptor 4D11-like NW_004955511 4022531 4023466 + 102011137 AGCD01066488;XM_013506353 XP_013361807 MODEL 9028476 protein-coding Lig4 DNA ligase 4 ENCODES a protein that exhibits AMP binding (ortholog); ATP binding (ortholog); DNA binding (ortholog); INVOLVED IN base-excision repair (ortholog); cell population proliferation (ortholog); cellular response to ionizing radiation (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH colorectal cancer (ortholog); DNA ligase IV deficiency (ortholog); genetic disease (ortholog); FOUND IN condensed chromosome (ortholog); DNA ligase IV complex (ortholog); DNA-dependent protein kinase-DNA ligase 4 complex (ortholog) NW_004955404 3606077 3615193 + 102024416 AGCD01003279;GBDF01038894;XM_005374013;XM_005374014;XM_013515840;XM_013515843;XM_013515847;XM_013515850 XP_005374070;XP_005374071;XP_013371294;XP_013371297;XP_013371301;XP_013371304 MODEL 8739089 protein-coding LOC102019231 multiple PDZ domain protein-like NW_004955849 9290 12584 + 102019231 AGCD01078489;XM_005415135 XP_005415192 MODEL 9014762 protein-coding Prr15 proline rich 15 NW_004955410 31012402 31016035 + 102016140 AGCD01011313;GBCQ01093607;XM_005377484;XR_001232750;XR_001232751 XP_005377541 MODEL 8911117 protein-coding Slc5a10 solute carrier family 5 member 10 ENCODES a protein that exhibits fructose:sodium symporter activity (ortholog); mannose:sodium symporter activity (ortholog) NW_004955467 581120 654441 - 102005579 AGCD01051226;AGCD01051227;AGCD01051228;AGCD01051229;AGCD01051230;GBCQ01011485;XM_005399280;XM_005399282;XM_005399284;XM_005399285 XP_005399337;XP_005399339;XP_005399341;XP_005399342 MODEL 8871839 pseudo LOC102025901 eukaryotic translation initiation factor 1 pseudogene NW_004955414 33467663 33468004 - 102025901 AGCD01015809 MODEL 8722343 protein-coding Wdr12 WD repeat domain 12 INVOLVED IN maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); Notch signaling pathway (ortholog); ASSOCIATED WITH coronary artery disease (ortholog); dilated cardiomyopathy (ortholog); myocardial infarction (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955457 11947816 11970066 + 102030389 AGCD01046996;AGCD01046997;GBDF01016523;XM_005397046;XM_005397047 XP_005397103;XP_005397104 MODEL 8720614 protein-coding Prdm13 PR/SET domain 13 ENCODES a protein that exhibits chromatin binding (ortholog); histone methyltransferase activity (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN GABAergic neuron differentiation (ortholog); hypothalamus cell differentiation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH CEREBELLAR DYSFUNCTION, IMPAIRED INTELLECTUAL DEVELOPMENT, AND HYPOGONADOTROPIC HYPOGONADISM (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog) NW_004955411 25481601 25489049 + 102020641 AGCD01012160;AGCD01012161;GBDF01198351;XM_005377940 XP_005377997 MODEL 8936672 ncrna LOC102026250 uncharacterized LOC102026250 NW_004955517 3550046 3554153 - 102026250 AGCD01067657;GBDI01363398;XR_264556 MODEL 8746211 pseudo LOC102010355 protein tyrosine phosphatase type IVA 1 pseudogene NW_004955414 6560097 6560687 - 102010355 AGCD01014920;XM_005379741;XM_005379742;XM_005379743 MODEL 8981356 protein-coding Ppef2 protein phosphatase with EF-hand domain 2 ENCODES a protein that exhibits Hsp70 protein binding (ortholog); Hsp90 protein binding (ortholog); mitogen-activated protein kinase kinase kinase binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); negative regulation of apoptotic signaling pathway (ortholog); negative regulation of MAPK cascade (ortholog) NW_004955474 1758988 1770427 + 102028528 AGCD01054267;AGCD01054268;GBDF01228178;XM_013523094 XP_013378548 MODEL 8886344 pseudo LOC102006983 39S ribosomal protein L32, mitochondrial pseudogene NW_004955408 16943160 16949169 + 102006983 AGCD01008449 MODEL 8822605 pseudo LOC102012739 olfactory receptor 6C74-like NW_004955458 2426969 2427904 - 102012739 AGCD01047233 MODEL 8708381 pseudo LOC102010762 RNA-binding protein 3 pseudogene NW_004955403 33567014 33567530 + 102010762 AGCD01002457 MODEL 8939476 protein-coding Plcl1 phospholipase C like 1 (inactive) ENCODES a protein that exhibits GABA receptor binding (ortholog); INVOLVED IN gamma-aminobutyric acid signaling pathway (ortholog); negative regulation of cold-induced thermogenesis (ortholog); regulation of synaptic transmission, GABAergic (ortholog); ASSOCIATED WITH Experimental Liver Neoplasms (ortholog) NW_004955403 2643092 2904651 - 102011717 AGCD01001738;AGCD01001739;AGCD01001740;GBDI01356679;XM_005373259;XM_013511993;XM_013511996;XM_013512003;XM_013512012;XM_013512015;XM_013512018;XM_013512022 XP_005373316;XP_013367447;XP_013367450;XP_013367457;XP_013367466;XP_013367469;XP_013367472;XP_013367476 MODEL 8924440 protein-coding Tp53 tumor protein p53 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); ATP-dependent DNA/DNA annealing activity (ortholog); chromatin binding (ortholog); INVOLVED IN positive regulation of outer hair cell apoptotic process; apoptotic signaling pathway (ortholog); autophagy (ortholog); PARTICIPATES IN altered p53 signaling pathway; endometrial cancer pathway; lung non-small cell carcinoma pathway; ASSOCIATED WITH Acute Erythroleukemia (ortholog); acute kidney failure (ortholog); acute lymphoblastic leukemia (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955467 9241391 9256716 + 102005455 AGCD01051484;AGCD01051485;GBCQ01124524;XM_005399463;XM_005399464 XP_005399520;XP_005399521 MODEL 9044867 pseudo LOC102030383 piggyBac transposable element-derived protein 3-like NW_004955406 34893093 34894899 - 102030383 AGCD01006515 MODEL 8886087 protein-coding Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit ENCODES a protein that exhibits DNA polymerase activity (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN DNA biosynthetic process (ortholog); DNA repair (ortholog); error-prone translesion synthesis (ortholog); ASSOCIATED WITH colon carcinoma (ortholog); genetic disease (ortholog); FOUND IN nucleolus (ortholog); site of DNA damage (ortholog); zeta DNA polymerase complex (ortholog) NW_004955411 36068248 36246607 - 102029601 AGCD01012464;AGCD01012465;AGCD01012466;AGCD01012467;AGCD01012468;AGCD01012469;GBDK01092750;XM_005377901;XM_005377902;XM_005377904;XM_005377905;XM_013510833;XM_013510834 XP_005377958;XP_005377959;XP_005377961;XP_005377962;XP_013366287;XP_013366288 MODEL 8992767 protein-coding Eml4 EMAP like 4 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); mitotic metaphase chromosome alignment (ortholog); negative regulation of microtubule depolymerization (ortholog); ASSOCIATED WITH Brain Neoplasms (ortholog); lung adenocarcinoma (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intercellular bridge (ortholog) NW_004955441 9633906 9715866 + 102021802 AGCD01037026;GBDI01081618;XM_013517609;XM_013517610;XR_001235328 XP_013373063;XP_013373064 MODEL 39132093 snorna SNORA61 small nucleolar RNA, H/ACA box 61 8916944 pseudo LOC102021720 thioredoxin-like NW_004955449 3639955 3645607 - 102021720 AGCD01041858 MODEL 10366618 ncrna LOC106149937 uncharacterized LOC106149937 NW_004955458 6316072 6320403 + 106149937 AGCD01047557;GBBH01013693;XR_001236435;XR_001236436 MODEL 8971611 protein-coding LOC102008488 palladin NW_004955403 37248908 37286650 - 102008488 AGCD01002565;GBCQ01040632;GBDJ01020208;XM_013513428 XP_013368882 MODEL 8961019 protein-coding LOC102003754 olfactory receptor 2AG1-like NW_004955414 22578726 22579673 + 102003754 AGCD01015464;XM_005380177 XP_005380234 MODEL 8772237 protein-coding Thra thyroid hormone receptor alpha ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN adrenal gland development (ortholog); animal organ morphogenesis (ortholog); cartilage condensation (ortholog); ASSOCIATED WITH breast cancer (ortholog); congenital nongoitrous hypothyroidism 6 (ortholog); Diaphragmatic Hernia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955451 14731746 14743545 + 102009675 AGCD01043569;AGCD01043570;GBCB01002160;XM_005394347 XP_005394404 MODEL 9010756 protein-coding Ring1 ring finger protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); ubiquitin-protein transferase activator activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); camera-type eye morphogenesis (ortholog); chromatin organization (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN nuclear body (ortholog); nucleus (ortholog); PcG protein complex (ortholog) NW_004955437 1782156 1785811 + 102029117 AGCD01034234;GBBH01001970;GBDK01002559;XM_005389478 XP_005389535 MODEL 8975534 ncrna LOC102015720 uncharacterized LOC102015720 NW_004955481 4043077 4053360 - 102015720 AGCD01056930;AGCD01056931;GBDF01016521;XR_263776 MODEL 9035453 ncrna LOC102018786 uncharacterized LOC102018786 NW_004955589 799399 809196 + 102018786 AGCD01076183;GBCQ01013843;XR_001232533;XR_001232534 MODEL 8810204 protein-coding Rundc3b RUN domain containing 3B NW_004955432 5032468 5186402 + 102026143 AGCD01030755;AGCD01030756;AGCD01030757;AGCD01030758;AGCD01030759;AGCD01030760;AGCD01030761;AGCD01030762;AGCD01030763;AGCD01030764;AGCD01030765;AGCD01030766;AGCD01030767;GBDF01251872;XM_013515918 XP_013371372 MODEL 8995005 protein-coding Pspn persephin ENCODES a protein that exhibits growth factor activity (ortholog); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); glial cell-derived neurotrophic factor receptor signaling pathway (ortholog); FOUND IN extracellular region (ortholog) NW_004955495 3218720 3220941 + 102014686 AGCD01061838;GBCE01007404;XM_005405723 XP_005405780 MODEL 10190939 protein-coding LOC102010356 uncharacterized LOC102010356 NW_004955470 374789 391272 - 102010356 AGCD01052609;GBCE01002380;XM_013522686 XP_013378140 MODEL 8782305 pseudo LOC102023455 peroxiredoxin-6-like NW_004955466 13303704 13320547 + 102023455 AGCD01051156 MODEL 8714822 protein-coding Pxmp2 peroxisomal membrane protein 2 FOUND IN cytoplasm (ortholog); peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955482 366613 373339 - 102019391 AGCD01057171;GBCB01058833;XM_005402949 XP_005403006 MODEL 8785871 protein-coding Ppfia1 PPFI scaffold protein A1 ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN cortical microtubule organization (ortholog); negative regulation of protein localization to plasma membrane (ortholog); negative regulation of stress fiber assembly (ortholog); FOUND IN axon (ortholog); cell cortex (ortholog); cytosol (ortholog) NW_004955422 15892945 15998786 - 102019607 AGCD01022883;AGCD01022884;AGCD01022885;AGCD01022886;GBDF01043150;GBDJ01234038;XM_013514113 XP_013369567 MODEL 8749247 protein-coding LOC102019232 doublesex- and mab-3-related transcription factor C1-like NW_004956354 942 4659 + 102019232 AGCD01079474;GBDF01153143;XM_005415198 XP_005415255 MODEL 8955692 ncrna LOC102009605 uncharacterized LOC102009605 NW_004955478 6496663 6507303 + 102009605 AGCD01055896;GBDF01194619;XR_001230836;XR_001230837;XR_001230838;XR_263699 MODEL 9007448 protein-coding LOC102027950 probable G-protein coupled receptor 141 NW_004955460 5783959 5840258 - 102027950 AGCD01048458;GBDK01147790;XM_013521095;XM_013521096;XM_013521097;XM_013521098;XM_013521099;XM_013521100;XM_013521101;XR_001236497 XP_013376549;XP_013376550;XP_013376551;XP_013376552;XP_013376553;XP_013376554;XP_013376555 MODEL 9001392 protein-coding Tp53bp1 tumor protein p53 binding protein 1 ENCODES a protein that exhibits histone H4K20me methyltransferase activity (ortholog); histone H4K20me2 reader activity (ortholog); histone reader activity (ortholog); INVOLVED IN cellular response to X-ray (ortholog); DNA damage response (ortholog); double-strand break repair via classical nonhomologous end joining (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH Breast Neoplasms (ortholog); Colonic Neoplasms (ortholog); glioblastoma (ortholog); FOUND IN chromosome (ortholog); chromosome, telomeric region (ortholog); cytoplasm (ortholog) NW_004955416 9962736 10035433 - 102005138 AGCD01017100;AGCD01017101;AGCD01017102;AGCD01017103;GBBH01227232;XM_005381379;XM_005381380;XM_005381381;XM_005381382;XM_005381383 XP_005381436;XP_005381437;XP_005381438;XP_005381439;XP_005381440 MODEL 10346084 ncrna LOC106148195 uncharacterized LOC106148195 NW_004955417 28356362 28361032 + 106148195 AGCD01018580;XR_001233413 MODEL 8788817 pseudo LOC102027253 stannin-like NW_004955450 11997050 12000003 + 102027253 AGCD01042686 MODEL 10361903 ncrna LOC106147096 uncharacterized LOC106147096 NW_004955518 3348143 3360986 + 106147096 AGCD01067799;AGCD01067800;GBDF01074799;XR_001231834;XR_001231835;XR_001231836 MODEL 8982033 protein-coding Trim42 tripartite motif containing 42 NW_004955508 4959495 4984166 - 102023058 AGCD01065897;GBDF01089541;XM_005407776 XP_005407833 MODEL 8885347 ncrna LOC102005533 uncharacterized LOC102005533 NW_004955402 4830997 4925604 + 102005533 AGCD01000128;AGCD01000129;GBDF01177440;XR_001235012;XR_259028 MODEL 8810957 protein-coding Pdgfrl platelet derived growth factor receptor like ASSOCIATED WITH colon carcinoma (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog) NW_004955552 2041267 2077971 - 102027237 AGCD01072797;GBCE01066660;GBDI01112826;XM_013508605 XP_013364059 MODEL 8739026 protein-coding Rbbp9 RB binding protein 9, serine hydrolase ENCODES a protein that exhibits serine hydrolase activity (ortholog); INVOLVED IN positive regulation of gene expression (ortholog); regulation of cell population proliferation (ortholog); response to nematode (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955415 27037875 27044558 - 102017450 AGCD01016622;GBCQ01007300;XM_005380932 XP_005380989 MODEL 8705962 protein-coding Sec11c SEC11 homolog C, signal peptidase complex subunit ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); signal peptidase activity (ortholog); INVOLVED IN protein maturation (ortholog); protein processing (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); signal peptidase complex (ortholog) NW_004955402 43317038 43333816 + 102013128 AGCD01001070;GBDI01007992;XM_005372997 XP_005373054 MODEL 8936815 protein-coding Prdm14 PR/SET domain 14 ENCODES a protein that exhibits chromatin DNA binding (ortholog); histone methyltransferase binding (ortholog); methyltransferase regulator activity (ortholog); INVOLVED IN cell fate specification (ortholog); cell morphogenesis (ortholog); embryo implantation (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); lung non-small cell carcinoma (ortholog); Testicular Germ Cell Tumor (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955444 9606310 9626772 + 102004335 AGCD01038974;AGCD01038975;AGCD01038976;GBDF01277783;XM_005392110 XP_005392167 MODEL 8792198 protein-coding LOC102028960 protocadherin gamma-C4 NW_004955415 12274922 12444793 - 102028960 AGCD01016187;AGCD01016188;AGCD01016189;AGCD01016190;AGCD01016191;AGCD01016192;AGCD01016193;AGCD01016194;AGCD01016195;AGCD01016196;GBCB01026284;XM_005380733;XM_005380735;XM_013512137;XM_013512138;XM_013512139;XM_013512140;XM_013512141;XM_013512142;XM_013512143;XM_013512144;XM_013512145;XM_013512146;XM_013512147;XM_013512148;XM_013512149;XM_013512150;XM_013512151;XM_013512152;XM_013512153;XM_013512154;XM_013512155;XM_013512156;XM_013512157;XM_013512158;XM_013512159;XM_013512160 XP_005380790;XP_005380792;XP_013367591;XP_013367592;XP_013367593;XP_013367594;XP_013367595;XP_013367596;XP_013367597;XP_013367598;XP_013367599;XP_013367600;XP_013367601;XP_013367602;XP_013367603;XP_013367604;XP_013367605;XP_013367606;XP_013367607;XP_013367608;XP_013367609;XP_013367610;XP_013367611;XP_013367612;XP_013367613;XP_013367614 MODEL 9018754 protein-coding Sertad3 SERTA domain containing 3 INVOLVED IN negative regulation of cell growth (ortholog); positive regulation of DNA-templated transcription (ortholog); regulation of DNA-templated transcription (ortholog); FOUND IN nucleus (ortholog) NW_004955578 837686 841561 + 102012380 AGCD01075499;GBDF01122108;XM_005414045 XP_005414102 MODEL 8740324 pseudo LOC102006984 ADP-ribosylation factor-like protein 2-binding protein pseudogene NW_004955458 70428 74229 + 102006984 AGCD01047106;XM_005397126 MODEL 8797975 protein-coding Pax9 paired box 9 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); endoderm development (ortholog); face morphogenesis (ortholog); ASSOCIATED WITH anodontia (ortholog); cleft palate (ortholog); Familial Prostate Cancer (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955409 24401599 24443687 - 102024192 AGCD01010083;GBCE01158842;XM_005376908;XM_013510360;XM_013510361;XM_013510362;XM_013510363;XM_013510364 XP_005376965;XP_013365814;XP_013365815;XP_013365816;XP_013365817;XP_013365818 MODEL 8895246 protein-coding Smc2 structural maintenance of chromosomes 2 ENCODES a protein that exhibits chromatin binding (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN B cell differentiation (ortholog); cell development (ortholog); cerebral cortex development (ortholog); ASSOCIATED WITH colon adenocarcinoma (ortholog); colorectal cancer (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN condensed chromosome (ortholog); condensed nuclear chromosome (ortholog); condensin complex (ortholog) NW_004955419 22245843 22294508 - 102005808 AGCD01020299;GBDK01433995;XM_005382790 XP_005382847 MODEL 9014092 pseudo LOC102024471 10 kDa heat shock protein, mitochondrial-like NW_004955421 4215206 4215943 + 102024471 AGCD01021685 MODEL 8847745 protein-coding Snupn snurportin 1 INVOLVED IN cytoskeleton organization (ortholog); protein complex oligomerization (ortholog); protein tetramerization (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 29 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); NLS-dependent protein nuclear import complex (ortholog) NW_004955450 2701496 2720971 + 102026376 AGCD01042395;AGCD01042396;AGCD01042397;AGCD01042398;GBDF01083761;XM_005393503;XM_005393504;XM_013519045 XP_005393560;XP_005393561;XP_013374499 MODEL 39133318 snrna U4 U4 spliceosomal RNA 8716170 pseudo LOC102011138 mitochondrial calcium uniporter regulator 1 pseudogene NW_004955430 1898687 1900786 - 102011138 AGCD01029142 MODEL 8881622 ncrna LOC102025902 uncharacterized LOC102025902 NW_004955415 5041744 5047128 - 102025902 AGCD01015989;GBBH01192973;XR_260268 MODEL 9007772 protein-coding Rex1bd required for excision 1-B domain containing NW_004955524 3003820 3005677 - 102009210 AGCD01068848;GBCE01001434;GBDJ01073176;XM_013507290 XP_013362744 MODEL 8859584 ncrna LOC102017639 uncharacterized LOC102017639 NW_004955410 16877529 16903847 - 102017639 AGCD01010974;GBDF01000533;XR_001232696;XR_259842 MODEL 8993522 protein-coding Lim2 lens intrinsic membrane protein 2 INVOLVED IN camera-type eye development (ortholog); lens development in camera-type eye (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); cataract (ortholog); cataract 19 multiple types (ortholog); FOUND IN vesicle (ortholog) NW_004955558 1019709 1024375 + 102012809 AGCD01073411;GBDK01111107;XM_013508909 XP_013364363 MODEL 9031136 protein-coding LOC102010358 olfactory receptor 52H1-like NW_004955414 21638413 21639375 + 102010358 AGCD01015425;XM_005380101 XP_005380158 MODEL 8729475 protein-coding Prr15l proline rich 15 like ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog) NW_004955451 13180880 13182035 + 102010857 AGCD01043458;GBBH01032907;GBDI01064474;XM_013519364 XP_013374818 MODEL 10092747 pseudo LOC106149938 nuclear receptor-binding factor 2-like NW_004955458 4313033 4317638 - 106149938 AGCD01047404;AGCD01047405 MODEL 8709099 protein-coding LOC102006596 3-ketoacyl-CoA thiolase B, peroxisomal NW_004955427 25541841 25552096 - 102006596 AGCD01027545;GBDK01085734;XM_013515208 XP_013370662 MODEL 9003751 protein-coding LOC102003755 uncharacterized LOC102003755 NW_004955470 10483806 10485953 - 102003755 AGCD01052870;GBDF01294395;XM_005400841 XP_005400898 MODEL 8807940 protein-coding Thrap3 thyroid hormone receptor associated protein 3 ENCODES a protein that exhibits nuclear thyroid hormone receptor binding (ortholog); phosphoprotein binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN circadian rhythm (ortholog); mRNA stabilization (ortholog); nuclear-transcribed mRNA catabolic process (ortholog); FOUND IN exon-exon junction complex (ortholog); mediator complex (ortholog); nuclear speck (ortholog) NW_004955452 14233155 14282521 + 102003201 AGCD01044459;AGCD01044460;AGCD01044461;AGCD01044462;GBDF01049619;XM_005395182;XM_005395183;XM_005395184 XP_005395239;XP_005395240;XP_005395241 MODEL 8733916 pseudo LOC102027255 high mobility group protein B1 pseudogene NW_004955450 470106 481651 - 102027255 AGCD01042336;AGCD01042337;AGCD01042338 MODEL 8959951 protein-coding Rad21l1 RAD21 cohesin complex component like 1 ASSOCIATED WITH spermatogenic failure 3 (ortholog); FOUND IN chromosome (ortholog); meiotic cohesin complex (ortholog); nucleus (ortholog) NW_004955596 455932 485853 + 102012386 AGCD01076519;GBDF01039792;XM_005414695;XM_005414696;XM_013510007 XP_005414752;XP_005414753;XP_013365461 MODEL 9028873 protein-coding LOC102012740 interferon-inducible GTPase 1-like NW_004955408 2198852 2276939 - 102012740 AGCD01007998;AGCD01007999;AGCD01008000;AGCD01008001;AGCD01008002;AGCD01008003;GBDK01009851;XM_005376044;XM_013508115 XP_005376101;XP_013363569 MODEL 8752355 pseudo LOC102010765 protein FAM133B pseudogene NW_004955405 3393161 3394490 + 102010765 AGCD01004634 MODEL 8765413 protein-coding LOC102030384 keratin-associated protein 13-2-like NW_004955407 29720454 29721242 - 102030384 AGCD01007614;XM_005375628 XP_005375685 MODEL 8941225 protein-coding Slc5a11 solute carrier family 5 member 11 ENCODES a protein that exhibits myo-inositol transmembrane transporter activity (ortholog); INVOLVED IN myo-inositol transport (ortholog); FOUND IN apical plasma membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955493 3259646 3317694 + 102027540 AGCD01060985;AGCD01060986;AGCD01060987;AGCD01060988;GBCQ01143291;XM_005405114;XM_005405115;XM_005405116;XM_005405117 XP_005405171;XP_005405172;XP_005405173;XP_005405174 MODEL 8960550 protein-coding Eml5 EMAP like 5 NW_004955438 11225910 11366996 - 102010307 AGCD01035231;AGCD01035232;AGCD01035233;AGCD01035234;AGCD01035235;GBBH01176854;GBDK01223254;XM_013517167 XP_013372621 MODEL 8852141 protein-coding Slc16a10 solute carrier family 16 member 10 ENCODES a protein that exhibits aromatic amino acid transmembrane transporter activity (ortholog); L-phenylalanine transmembrane transporter activity (ortholog); L-tryptophan transmembrane transporter activity (ortholog); INVOLVED IN aromatic amino acid transport (ortholog); thyroid hormone generation (ortholog); thyroid hormone transport (ortholog); ASSOCIATED WITH esophagus squamous cell carcinoma (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell junction (ortholog); plasma membrane (ortholog) NW_004955411 35758612 35871179 + 102025888 AGCD01012457;GBCB01059371;XM_013510862;XM_013510863;XM_013510864;XM_013510865;XR_001232837;XR_001232838 XP_013366316;XP_013366317;XP_013366318;XP_013366319 MODEL 39133319 snrna U4 U4 spliceosomal RNA 8969104 pseudo LOC102025903 cytochrome c oxidase subunit 7B, mitochondrial pseudogene NW_004955473 5730553 5730842 - 102025903 AGCD01053983 MODEL 8778320 pseudo LOC102011560 uncharacterized protein C8orf59 homolog NW_004955500 5318759 5319643 - 102011560 AGCD01063830 MODEL 9011920 protein-coding Brwd3 bromodomain and WD repeat domain containing 3 ASSOCIATED WITH autism spectrum disorder (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog) NW_004955529 834459 992259 - 102018130 AGCD01069659;AGCD01069660;AGCD01069661;AGCD01069662;AGCD01069663;AGCD01069664;GBDK01342474;XM_005410071 XP_005410128 MODEL 8789342 ncrna LOC102015721 uncharacterized LOC102015721 NW_004955481 10034469 10041461 + 102015721 AGCD01057135;GBBH01033155;XR_001230930 MODEL 8844354 protein-coding Ppfia2 PPFI scaffold protein A2 ENCODES a protein that exhibits protein-containing complex binding (ortholog); structural constituent of postsynaptic density (ortholog); structural constituent of presynapse (ortholog); INVOLVED IN dense core granule cytoskeletal transport (ortholog); regulation of dendritic spine development (ortholog); regulation of dendritic spine morphogenesis (ortholog); FOUND IN dendritic spine (ortholog); glutamatergic synapse (ortholog); postsynaptic density (ortholog) NW_004955405 19837749 20291666 - 102024420 AGCD01005047;AGCD01005048;AGCD01005049;AGCD01005050;AGCD01005051;AGCD01005052;AGCD01005053;AGCD01005054;GBCE01046938;XM_005374377;XM_005374388;XM_013517986;XM_013517988;XM_013517990;XM_013517995;XM_013518004;XM_013518006;XM_013518011;XM_013518014;XM_013518017;XM_013518024;XM_013518025 XP_005374434;XP_005374445;XP_013373440;XP_013373442;XP_013373444;XP_013373449;XP_013373458;XP_013373460;XP_013373465;XP_013373468;XP_013373471;XP_013373478;XP_013373479 MODEL 9011506 protein-coding LOC102028604 disabled homolog 2-like NW_004956845 12 2832 - 102028604 AGCD01080230;GBDJ01080075;XM_005415214 XP_005415271 MODEL 8995716 protein-coding Tp53bp2 tumor protein p53 binding protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); NF-kappaB binding (ortholog); p53 binding (ortholog); INVOLVED IN intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); positive regulation of cellular process (ortholog); positive regulation of execution phase of apoptosis (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH breast lobular carcinoma (ortholog); Breast Neoplasms (ortholog); chromosome 1q41-q42 deletion syndrome (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955520 1254853 1285118 + 102011472 AGCD01068050;GBCB01040894;XM_013507058;XM_013507059;XM_013507060;XM_013507061 XP_013362512;XP_013362513;XP_013362514;XP_013362515 MODEL 8745483 ncrna LOC102006597 uncharacterized LOC102006597 NW_004955511 5768199 5770593 + 102006597 AGCD01066580;GBCB01022175;XR_001231697 MODEL 8716119 protein-coding Trim44 tripartite motif containing 44 INVOLVED IN negative regulation of protein K48-linked ubiquitination (ortholog); positive regulation of cytokine-mediated signaling pathway (ortholog); positive regulation of defense response to virus by host (ortholog); ASSOCIATED WITH aniridia (ortholog); Aniridia 3 (ortholog); Cardiomegaly (ortholog); FOUND IN cytoplasm (ortholog) NW_004955422 10580002 10690349 - 102008739 AGCD01022741;AGCD01022742;AGCD01022743;GBCB01005350;XM_005384121 XP_005384178 MODEL 8985733 protein-coding Rbck1 RANBP2-type and C3HC4-type zinc finger containing 1 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); identical protein binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN defense response to bacterium (ortholog); negative regulation of necroptotic process (ortholog); positive regulation of apoptotic process (ortholog); PARTICIPATES IN nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); genetic disease (ortholog); glycogen storage disease IV (ortholog); FOUND IN LUBAC complex (ortholog) NW_004955597 272352 289348 + 102021192 AGCD01076553;AGCD01076554;GBBH01033064;XM_005414720;XM_005414721;XM_005414722 XP_005414777;XP_005414778;XP_005414779 MODEL 8901131 protein-coding Runx1 RUNX family transcription factor 1 PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); asthma (ortholog) NW_004955407 34108653 34342657 - 102029935 AGCD01007717;AGCD01007718;AGCD01007719;AGCD01007720;GBBH01187973;XM_005375708;XM_005375710 XP_005375765;XP_005375767 MODEL 8809489 protein-coding LOC102023459 taste receptor type 2 member 14-like NW_004955413 8021256 8022194 - 102023459 AGCD01013841;XM_005379627 XP_005379684 MODEL 39133305 snorna SNORA62 Small nucleolar RNA SNORA62/SNORA6 family 8992109 ncrna LOC102027261 uncharacterized LOC102027261 NW_004955404 6171927 6176957 - 102027261 AGCD01003315;GBDF01305079;XR_259298 MODEL 8897119 ncrna LOC102008489 uncharacterized LOC102008489 NW_004956123 1825 3767 - 102008489 AGCD01079091;GBDF01090413;XR_001232607;XR_265205 MODEL 8937040 protein-coding Smc3 structural maintenance of chromosomes 3 ENCODES a protein that exhibits beta-tubulin binding (ortholog); chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN meiotic cell cycle (ortholog); mitotic spindle assembly (ortholog); regulation of DNA replication (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Cornelia de Lange syndrome (ortholog); Cornelia de Lange syndrome 1 (ortholog); FOUND IN basement membrane (ortholog); chromatin (ortholog); cohesin complex (ortholog) NW_004955485 815281 848561 - 102015960 AGCD01058459;GBDK01140947;XM_005403754 XP_005403811 MODEL 9041775 protein-coding Thrb thyroid hormone receptor beta ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); apoptotic process (ortholog); cellular response to thyroid hormone stimulus (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); attention deficit hyperactivity disorder (ortholog); breast cancer (ortholog); FOUND IN nuclear body (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955430 15992146 16322696 - 102011571 AGCD01029630;AGCD01029631;AGCD01029632;AGCD01029633;AGCD01029634;GBDI01296864;XM_005387482;XM_013515651 XP_005387539;XP_013371105 MODEL 8817598 protein-coding Pxmp4 peroxisomal membrane protein 4 INVOLVED IN ether lipid metabolic process (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955422 27602348 27617901 + 102026880 AGCD01023328;AGCD01023329;GBDK01282137;XM_005384839 XP_005384896 MODEL 8988730 protein-coding LOC102026251 acyl-coenzyme A thioesterase 6-like NW_004955523 1727117 1742226 - 102026251 AGCD01068539;AGCD01068540;AGCD01068541;GBBH01184443;XM_013507119 XP_013362573 MODEL 8837479 ncrna LOC102009608 uncharacterized LOC102009608 NW_004955481 940584 941784 - 102009608 AGCD01056818;GBDF01049337;XR_263757 MODEL 8937302 protein-coding LOC102027952 spermatogenesis-associated protein 31E1-like NW_004955462 5367042 5373959 + 102027952 AGCD01049258;AGCD01049259;GBDF01156499;XM_013521363;XM_013521364 XP_013376817;XP_013376818 MODEL 10340611 ncrna LOC106147097 uncharacterized LOC106147097 NW_004955518 1919365 1939005 - 106147097 AGCD01067769;GBDF01265857;XR_001231837 MODEL 10252631 ncrna LOC106148196 uncharacterized LOC106148196 NW_004955417 30898615 30900143 + 106148196 AGCD01018633;XR_001233414 MODEL 9014031 ncrna LOC102017640 uncharacterized LOC102017640 NW_004955463 4830363 4852657 + 102017640 AGCD01049617;AGCD01049618;AGCD01049619;XR_263145;XR_263146 MODEL 8967078 protein-coding Rexo1 RNA exonuclease 1 homolog ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog) NW_004955495 6194380 6219907 + 102025594 AGCD01062056;AGCD01062057;GBDF01010614;XM_005405946 XP_005406003 MODEL 9013490 protein-coding LOC102018787 uncharacterized LOC102018787 NW_004955450 3641318 3645239 + 102018787 AGCD01042439;GBDJ01361209;XM_005393575 XP_005393632 MODEL 9022593 protein-coding Plcl2 phospholipase C like 2 ENCODES a protein that exhibits GABA receptor binding (ortholog); INVOLVED IN B cell proliferation involved in immune response (ortholog); B-1a B cell differentiation (ortholog); gamma-aminobutyric acid signaling pathway (ortholog); ASSOCIATED WITH schizophrenia (ortholog) NW_004955430 9157074 9347366 + 102028997 AGCD01029407;AGCD01029408;AGCD01029409;GBCE01152675;GBDJ01186898;XM_005387455 XP_005387512 MODEL 8766547 protein-coding Sec13 SEC13 homolog, nuclear pore and COPII component ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); COPII-coated vesicle cargo loading (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); PARTICIPATES IN mRNA nuclear export pathway; FOUND IN COPII vesicle coat (ortholog); endoplasmic reticulum membrane (ortholog); GATOR2 complex (ortholog) NW_004955561 1707053 1723715 - 102021488 AGCD01073864;GBBH01001853;XM_005413078;XM_013509095;XM_013509096 XP_005413135;XP_013364549;XP_013364550 MODEL 8852551 protein-coding Slc16a11 solute carrier family 16 member 11 ENCODES a protein that exhibits pyruvate transmembrane transporter activity (ortholog); INVOLVED IN lipid metabolic process (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955467 9891909 9894192 + 102007209 AGCD01051535;GBDF01184767;XM_005399574;XM_005399575;XM_005399576 XP_005399631;XP_005399632;XP_005399633 MODEL 8848615 protein-coding Psrc1 proline and serine rich coiled-coil 1 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN microtubule bundle formation (ortholog); mitotic metaphase chromosome alignment (ortholog); negative regulation of cell growth (ortholog); ASSOCIATED WITH coronary artery disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); microtubule cytoskeleton (ortholog) NW_004955435 12697179 12702021 - 102025719 AGCD01033162;GBDK01264620;XM_013516446;XM_013516447;XM_013516448;XM_013516449;XM_013516450;XM_013516451;XM_013516452;XM_013516453 XP_013371900;XP_013371901;XP_013371902;XP_013371903;XP_013371904;XP_013371905;XP_013371906;XP_013371907 MODEL 8792541 protein-coding Prdm15 PR/SET domain 15 ENCODES a protein that exhibits promoter-specific chromatin binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of MAPK cascade (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH pervasive developmental disorder (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 39680757 39714917 + 102019668 AGCD01007834;GBDI01208301;XM_005375846;XM_013505249 XP_005375903;XP_013360703 MODEL 8968399 protein-coding LOC102021725 serine protease 52-like NW_004955403 52095441 52106295 - 102021725 AGCD01003001;GBDF01120892;XM_005373801 XP_005373858 MODEL 10276227 protein-coding Snurf SNRPN upstream open reading frame ENCODES a protein that exhibits ATPase binding (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog) NW_004955416 31655664 31668803 + 106146229 AGCD01017766;AGCD01017767;AGCD01017768;XM_005381679 XP_005381736 MODEL 8943753 pseudo LOC102019234 trifunctional purine biosynthetic protein adenosine-3 pseudogene NW_004955403 4274146 4277480 - 102019234 AGCD01001784 MODEL 8810968 protein-coding Rbfa ribosome binding factor A ENCODES a protein that exhibits ribosomal small subunit binding (ortholog); rRNA binding (ortholog); INVOLVED IN mitochondrial small ribosomal subunit assembly (ortholog); FOUND IN methyltransferase complex (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955402 63213097 63224252 + 102028703 AGCD01001665;GBDF01126328;XM_005373124 XP_005373181 MODEL 8769645 pseudo LOC102011140 thioredoxin pseudogene NW_004955512 2762023 2762354 - 102011140 AGCD01066685 MODEL 8801495 protein-coding Ppfia3 PPFI scaffold protein A3 INVOLVED IN neurotransmitter secretion (ortholog); regulation of short-term neuronal synaptic plasticity (ortholog); synaptic vesicle docking (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hao-Fountain Syndrome (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); epididymosome (ortholog) NW_004955559 1587633 1610065 - 102022974 AGCD01073652;AGCD01073653;GBCQ01152568;XM_005412904;XM_013508999;XM_013509000;XM_013509001 XP_005412961;XP_013364453;XP_013364454;XP_013364455 MODEL 8785958 protein-coding Wdr13 WD repeat domain 13 ENCODES a protein that exhibits promoter-specific chromatin binding (ortholog); INVOLVED IN negative regulation of type B pancreatic cell proliferation (ortholog); ASSOCIATED WITH esophageal atresia (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955543 182279 190435 + 102022017 AGCD01071563;GBDJ01277750;XM_005411270;XM_005411271 XP_005411327;XP_005411328 MODEL 8823119 pseudo LOC102030387 uncharacterized LOC102030387 NW_004955407 2199248 2204408 + 102030387 AGCD01006813 MODEL 8798107 protein-coding Rinl Ras and Rab interactor like ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN endocytosis (ortholog); FOUND IN actin cytoskeleton (ortholog); ruffle (ortholog) NW_004955468 644530 651686 + 102003642 AGCD01051719;GBDK01293890;XM_005399806;XM_005399807;XM_005399809;XM_005399810;XM_005399812;XM_013522413;XM_013522415;XM_013522416;XM_013522417 XP_005399863;XP_005399864;XP_005399866;XP_005399867;XP_005399869;XP_013377867;XP_013377869;XP_013377870;XP_013377871 MODEL 8843210 protein-coding Lima1 LIM domain and actin binding 1 ENCODES a protein that exhibits actin filament binding (ortholog); actin monomer binding (ortholog); microtubule stabilizing activity (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); cell migration (ortholog); cholesterol homeostasis (ortholog); PARTICIPATES IN E-cadherin signaling pathway; FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog); brush border (ortholog) NW_004955547 730152 827644 - 102015666 AGCD01072174;AGCD01072175;AGCD01072176;AGCD01072177;AGCD01072178;AGCD01072179;AGCD01072180;AGCD01072181;GBDK01135743;XM_013508484;XM_013508485;XM_013508486;XM_013508487;XM_013508488;XM_013508489 XP_013363938;XP_013363939;XP_013363940;XP_013363941;XP_013363942;XP_013363943 MODEL 8730900 protein-coding Slc5a12 solute carrier family 5 member 12 ENCODES a protein that exhibits lactate transmembrane transporter activity (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog) NW_004955476 6067657 6117983 - 102014134 AGCD01055322;AGCD01055323;GBCQ01008443;XM_005401744 XP_005401801 MODEL 8801982 protein-coding LOC102003756 olfactory receptor 52E8-like NW_004955414 21787675 21788613 + 102003756 AGCD01015432;XM_005380430 XP_005380487 MODEL 8725356 protein-coding LOC102009610 dnaJ homolog subfamily C member 25 NW_004955419 15664786 15684889 - 102009610 AGCD01020086;AGCD01020087;GBBH01057437;GBDF01120670;XM_013513302 XP_013368756 MODEL 8740331 ncrna LOC102006991 uncharacterized LOC102006991 NW_004955463 9497759 9499164 + 102006991 AGCD01049785;XR_263164 MODEL 8993496 protein-coding Bscl2 BSCL2 lipid droplet biogenesis associated, seipin ENCODES a protein that exhibits phospholipid binding (ortholog); INVOLVED IN adipose tissue development (ortholog); cytosolic lipolysis (ortholog); fat cell differentiation (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Asthenozoospermia (ortholog); autosomal dominant distal hereditary motor neuronopathy 13 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); lipid droplet (ortholog) NW_004955599 505725 514225 + 102011605 AGCD01076654;GBDJ01021043;XM_013510053;XM_013510054;XM_013510055;XM_013510056 XP_013365507;XP_013365508;XP_013365509;XP_013365510 MODEL 8880742 protein-coding Sertad4 SERTA domain containing 4 FOUND IN nucleoplasm (ortholog) NW_004955489 1947819 1958434 - 102019070 AGCD01059855;AGCD01059856;GBBH01121747;GBDJ01175985;XM_005404520 XP_005404577 MODEL 8822755 protein-coding Paxbp1 PAX3 and PAX7 binding protein 1 ENCODES a protein that exhibits histone methyltransferase binding (ortholog); INVOLVED IN positive regulation of myoblast proliferation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of skeletal muscle satellite cell proliferation (ortholog); ASSOCIATED WITH High Myopia (ortholog); FOUND IN nucleus (ortholog) NW_004955407 32178837 32210470 - 102017425 AGCD01007669;AGCD01007670;GBCQ01093479;XM_005375673 XP_005375730 MODEL 9010870 protein-coding LOC102006598 olfactory receptor 5B2-like NW_004955511 3228174 3232952 - 102006598 AGCD01066450;XM_013506387 XP_013361841 MODEL 8909233 protein-coding LOC102024472 GTPase IMAP family member 7-like NW_004955491 5229068 5233840 - 102024472 AGCD01060475;AGCD01060476;XM_005404791 XP_005404848 MODEL 9006122 protein-coding Trim45 tripartite motif containing 45 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN bone development (ortholog); negative regulation of inflammatory response (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955435 20216685 20225061 - 102006946 AGCD01033447;GBDF01194974;XM_005389053 XP_005389110 MODEL 8842099 protein-coding LOC102003757 olfactory receptor 11L1-like NW_004955473 3769632 3770567 + 102003757 AGCD01053938;XM_005401224 XP_005401281 MODEL 8858145 ncrna LOC102023460 uncharacterized LOC102023460 NW_004955414 18802615 18804119 - 102023460 AGCD01015287;GBDF01087275;XR_001233176;XR_001233177 MODEL 39132051 snorna SNORA62 Small nucleolar RNA SNORA62/SNORA6 family 8918115 pseudo LOC102010366 regulator of nonsense transcripts 2 pseudogene NW_004955416 11225709 11227659 + 102010366 AGCD01017181 MODEL 10088056 protein-coding Prr16 proline rich 16 INVOLVED IN positive regulation of cell size (ortholog); positive regulation of translation (ortholog) NW_004955408 40118918 40251144 + 106147119 AGCD01009120;AGCD01009121;AGCD01009122;AGCD01009123;AGCD01009124;AGCD01009125;GBDF01210195;GBDJ01048148;XM_013507054 XP_013362508 MODEL 8702359 protein-coding Eml6 EMAP like 6 ASSOCIATED WITH High Myopia (ortholog); keratoconus (ortholog) NW_004955424 28125287 28461646 - 102014262 AGCD01025147;AGCD01025148;AGCD01025149;AGCD01025150;AGCD01025151;AGCD01025152;AGCD01025153;AGCD01025154;AGCD01025155;AGCD01025156;AGCD01025157;AGCD01025158;AGCD01025159;AGCD01025160;AGCD01025161;AGCD01025162;AGCD01025163;AGCD01025164;AGCD01025165;AGCD01025166;AGCD01025167;AGCD01025168;GBDF01277097;XM_013514622;XM_013514623;XM_013514624;XM_013514625;XM_013514626;XR_001234170 XP_013370076;XP_013370077;XP_013370078;XP_013370079;XP_013370080 MODEL 8796130 pseudo LOC102011563 serine/threonine-protein kinase Sgk1 pseudogene NW_004955426 24322315 24323612 + 102011563 AGCD01026676 MODEL 8899733 protein-coding Smc4 structural maintenance of chromosomes 4 ENCODES a protein that exhibits chromatin binding (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN B cell differentiation (ortholog); cell development (ortholog); cerebral cortex development (ortholog); FOUND IN chromosome, centromeric region (ortholog); condensed nuclear chromosome (ortholog); condensin complex (ortholog) NW_004955448 10926653 10960624 + 102003919 AGCD01041504;AGCD01041505;AGCD01041506;AGCD01041507;GBBH01229940;GBDF01088763;XM_005393119 XP_005393176 MODEL 8839648 protein-coding Thrsp thyroid hormone responsive ENCODES a protein that exhibits identical protein binding (ortholog); molecular function inhibitor activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN regulation of lipid biosynthetic process (ortholog); regulation of triglyceride biosynthetic process (ortholog); response to bacterium (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); attention deficit hyperactivity disorder (ortholog); carcinoma (ortholog); FOUND IN cytosol (ortholog) NW_004955414 13879095 13883378 - 102006448 AGCD01015123;GBDI01010753;XM_005379823 XP_005379880 MODEL 8752424 protein-coding Pxn paxillin ENCODES a protein that exhibits beta-catenin binding (ortholog); BH4 domain binding (ortholog); integrin binding (ortholog); INVOLVED IN branching morphogenesis of an epithelial tube (ortholog); cell migration (ortholog); cellular response to reactive oxygen species (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; insulin-like growth factor signaling pathway; integrin mediated signaling pathway; ASSOCIATED WITH Experimental Melanoma (ortholog); lung non-small cell carcinoma (ortholog); Neoplasm Metastasis (ortholog); FOUND IN cell leading edge (ortholog); cell-cell junction (ortholog); cytosol (ortholog) NW_004955455 11387140 11401178 + 102013905 AGCD01046003;GBDK01059902;XM_005396515;XM_013520331;XM_013520332 XP_005396572;XP_013375785;XP_013375786 MODEL 8881688 pseudo LOC102028963 sodium/potassium-transporting ATPase subunit beta-3-like NW_004955416 14678130 14679883 - 102028963 AGCD01017282 MODEL 9007427 pseudo LOC102025905 triosephosphate isomerase-like NW_004955474 6153045 6175838 + 102025905 AGCD01054451;AGCD01054452;AGCD01054453;AGCD01054454;AGCD01054455 MODEL 8762236 ncrna LOC102015722 uncharacterized LOC102015722 NW_004955418 3638310 3648153 - 102015722 AGCD01018796;AGCD01018797;GBDF01006642;XR_260539 MODEL 8949195 protein-coding LOC102028605 keratin, type I cuticular Ha1 NW_004955451 15778386 15781761 - 102028605 AGCD01043637;GBCE01168253;XM_005394400 XP_005394457 MODEL 8723385 pseudo LOC102012742 gamma-aminobutyric acid receptor-associated protein pseudogene NW_004955409 17452914 17453267 - 102012742 AGCD01009784 MODEL 9066218 pseudo LOC102010772 protein FRG1 pseudogene NW_004955407 27229926 27230701 - 102010772 AGCD01007548 MODEL 9018284 protein-coding Tp53i11 tumor protein p53 inducible protein 11 NW_004955422 2829212 2833197 + 102022504 AGCD01022495;GBCB01113268;GBDF01308043;XM_013514200 XP_013369654 MODEL 8730162 pseudo LOC102009612 zinc finger matrin-type protein 2 pseudogene NW_004955485 7634595 7636928 - 102009612 AGCD01058668 MODEL 8758766 protein-coding LOC102005537 protein S100-A15A NW_004955592 62455 67295 + 102005537 AGCD01076300;XM_005414601 XP_005414658 MODEL 8733286 protein-coding Prdm16 PR/SET domain 16 ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN beige fat cell differentiation (ortholog); brown fat cell differentiation (ortholog); heterochromatin organization (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH coronary artery disease (ortholog); dilated cardiomyopathy (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955486 8139848 8327788 - 102028759 AGCD01059147;GBCQ01101271;GBDI01386309;XM_013504223 XP_013359677 MODEL 8823033 pseudo LOC102027263 60S ribosomal protein L12-like NW_004955404 36765675 36766264 - 102027263 AGCD01004183 MODEL 39133320 snrna U4 U4 spliceosomal RNA 10255986 ncrna LOC106147098 uncharacterized LOC106147098 NW_004955518 4673408 4680733 - 106147098 AGCD01067835;GBCQ01139426;XR_001231839 MODEL 8948494 pseudo LOC102030393 trinucleotide repeat-containing gene 6A protein pseudogene NW_004955409 16168776 16172652 + 102030393 AGCD01009712 MODEL 8875871 protein-coding Rbfox1 RNA binding fox-1 homolog 1 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); RNA binding (ortholog); INVOLVED IN neuromuscular process controlling balance (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); regulation of skeletal muscle cell differentiation (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); nuclear stress granule (ortholog) NW_004955442 10345261 10694602 - 102021179 AGCD01037701;AGCD01037702;AGCD01037703;AGCD01037704;AGCD01037705;AGCD01037706;AGCD01037707;AGCD01037708;GBCB01001044;XM_005391225;XM_005391226;XM_005391227;XM_005391228;XM_005391229;XM_005391230;XM_005391232;XM_005391233;XM_005391235;XM_005391236;XM_005391238;XM_013517915;XM_013517916;XM_013517917;XM_013517918;XM_013517919;XR_001235411 XP_005391282;XP_005391283;XP_005391284;XP_005391285;XP_005391286;XP_005391287;XP_005391289;XP_005391290;XP_005391292;XP_005391293;XP_005391295;XP_013373369;XP_013373370;XP_013373371;XP_013373372;XP_013373373 MODEL 8857812 protein-coding Wdr17 WD repeat domain 17 ASSOCIATED WITH Liver Neoplasms (ortholog) NW_004955403 31559972 31658899 - 102017620 AGCD01002421;AGCD01002422;GBDK01228794;XM_005373519;XM_005373520;XM_005373521 XP_005373576;XP_005373577;XP_005373578 MODEL 8971304 protein-coding Rad23a RAD23 nucleotide excision repair protein A ENCODES a protein that exhibits histone H4K20 demethylase activity (ortholog); kinase binding (ortholog); polyubiquitin modification-dependent protein binding (ortholog); INVOLVED IN DNA damage response (ortholog); nucleotide-excision repair (ortholog); positive regulation of cell cycle (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955415 31991478 31997277 + 102026420 AGCD01016704;AGCD01016705;GBDF01009119;XM_005381043;XM_013512243 XP_005381100;XP_013367697 MODEL 9031098 protein-coding Slc5a2 solute carrier family 5 member 2 ENCODES a protein that exhibits alpha-glucoside transmembrane transporter activity (ortholog); D-glucose transmembrane transporter activity (ortholog); D-glucose:sodium symporter activity (ortholog); INVOLVED IN alpha-glucoside transport (ortholog); D-glucose import across plasma membrane (ortholog); D-glucose transmembrane transport (ortholog); PARTICIPATES IN sodium-glucose cotransporter mediated glucose transport pathway; ASSOCIATED WITH familial renal glucosuria (ortholog); genetic disease (ortholog); hypertension (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); plasma membrane (ortholog) NW_004955493 8322972 8329886 + 102008866 AGCD01061291;GBDI01039947;XM_005405327;XM_013504877 XP_005405384;XP_013360331 MODEL 8918972 protein-coding Rexo2 RNA exonuclease 2 ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); 3'-5'-DNA exonuclease activity (ortholog); 3'-5'-RNA exonuclease activity (ortholog); INVOLVED IN mitochondrial RNA surveillance (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial matrix (ortholog) NW_004955412 16025304 16035925 + 102013269 AGCD01012891;GBCQ01066636;XM_005378159;XM_005378160 XP_005378216;XP_005378217 MODEL 8821186 protein-coding Limch1 LIM and calponin homology domains 1 ENCODES a protein that exhibits myosin II head/neck binding (ortholog); INVOLVED IN cytoplasmic actin-based contraction involved in cell motility (ortholog); negative regulation of cell migration (ortholog); positive regulation of protein phosphorylation (ortholog); ASSOCIATED WITH malignant mesothelioma (ortholog); substance-related disorder (ortholog); FOUND IN actin cytoskeleton (ortholog); myosin II complex (ortholog); stress fiber (ortholog) NW_004955443 5984027 6305014 - 102011054 AGCD01038245;AGCD01038246;AGCD01038247;AGCD01038248;AGCD01038249;GBCB01002554;GBDK01003882;XM_005391928;XM_005391930;XM_013518053 XP_005391985;XP_005391987;XP_013373507 MODEL 8803216 protein-coding Plcxd1 phosphatidylinositol specific phospholipase C X domain containing 1 FOUND IN cytoplasm (ortholog) NW_004955499 574421 585386 + 102023053 AGCD01063242;AGCD01063243;AGCD01063244;GBDK01020725;GBDK01033039;XM_013505584;XM_013505585;XM_013505586;XM_013505587;XM_013505588 XP_013361038;XP_013361039;XP_013361040;XP_013361041;XP_013361042 MODEL 8702256 pseudo LOC102006994 cytochrome c oxidase subunit 7A2, mitochondrial pseudogene NW_004955412 10686073 10686348 + 102006994 AGCD01012776 MODEL 10120789 pseudo LOC106149939 small nuclear ribonucleoprotein E-like NW_004955458 975486 975893 - 106149939 AGCD01047160 MODEL 9020231 ncrna LOC102021734 uncharacterized LOC102021734 NW_004955407 40982526 40988715 + 102021734 AGCD01007854;GBCE01120715;XR_001231377;XR_001231379 MODEL 9003117 protein-coding Runx1t1 RUNX1 partner transcriptional co-repressor 1 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); identical protein binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN fat cell differentiation (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of fat cell differentiation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); basal cell carcinoma (ortholog); Dwarfism (ortholog); FOUND IN nuclear matrix (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955417 8580355 8714267 - 102016265 AGCD01018029;AGCD01018030;AGCD01018031;AGCD01018032;GBCB01020155;XM_005381778 XP_005381835 MODEL 8822172 protein-coding Pstk phosphoseryl-tRNA kinase ENCODES a protein that exhibits L-seryl-tRNA(Sec) kinase activity (ortholog); tRNA binding (ortholog); INVOLVED IN selenocysteine incorporation (ortholog) NW_004955477 1147596 1157755 + 102024458 AGCD01055503;GBDF01039234;XM_005401952 XP_005402009 MODEL 8904162 protein-coding Snw1 SNW domain containing 1 ENCODES a protein that exhibits enzyme binding (ortholog); Notch binding (ortholog); nuclear androgen receptor binding (ortholog); INVOLVED IN cellular response to retinoic acid (ortholog); host-mediated activation of viral transcription (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Brain Injuries (ortholog); breast cancer (ortholog); breast carcinoma (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); chromatin (ortholog); cyclin/CDK positive transcription elongation factor complex (ortholog) NW_004955438 1561562 1601492 - 102019433 AGCD01034986;GBDF01008825;XM_005390214 XP_005390271 MODEL 8730603 ncrna LOC102003758 uncharacterized LOC102003758 NW_004955415 5445231 5497596 + 102003758 AGCD01015995;GBDK01101825;XR_260270 MODEL 10233295 ncrna LOC106148197 uncharacterized LOC106148197 NW_004955417 10540118 10546341 + 106148197 AGCD01018077;XR_001233415 MODEL 8820198 protein-coding Ppfia4 PPFI scaffold protein A4 ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN glutamatergic synapse (ortholog); parallel fiber to Purkinje cell synapse (ortholog); presynapse (ortholog) NW_004955406 39047069 39094663 + 102006420 AGCD01006618;GBCE01131582;XM_013522498;XM_013522500;XM_013522503;XM_013522514;XR_001236928;XR_001236930;XR_001236934 XP_013377952;XP_013377954;XP_013377957;XP_013377968 MODEL 8794655 ncrna LOC102010368 uncharacterized LOC102010368 NW_004955417 26506352 26519514 - 102010368 AGCD01018512;AGCD01018513;GBDJ01093566;XR_001233419;XR_001233420;XR_001233421 MODEL 8916375 protein-coding Rint1 RAD50 interactor 1 INVOLVED IN mitotic G2 DNA damage checkpoint signaling (ortholog); regulation of ER to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); hereditary breast ovarian cancer syndrome (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN Dsl1/NZR complex (ortholog); endoplasmic reticulum (ortholog) NW_004955410 10121322 10144748 + 102023124 AGCD01010792;GBDF01158170;XM_005377249;XM_013510527 XP_005377306;XP_013365981 MODEL 8846591 protein-coding LOC102017641 tubulin beta-2A chain-like NW_004955465 10090568 10092941 + 102017641 AGCD01050501;GBDK01005775;XM_005398904 XP_005398961 MODEL 8896652 protein-coding LOC102018789 protocadherin alpha-10-like NW_004955611 330456 333750 - 102018789 AGCD01077163;XM_013510124 XP_013365578 MODEL 8928568 protein-coding Smc5 structural maintenance of chromosomes 5 ENCODES a protein that exhibits DNA secondary structure binding (ortholog); INVOLVED IN cellular senescence (ortholog); chromosome condensation (ortholog); chromosome segregation (ortholog); ASSOCIATED WITH Atelis syndrome 2 (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN chromosome, centromeric region (ortholog); chromosome, telomeric region (ortholog); cytoplasm (ortholog) NW_004955434 2742276 2848384 - 102007149 AGCD01032105;AGCD01032106;AGCD01032107;AGCD01032108;AGCD01032109;AGCD01032110;GBBH01011429;GBDJ01164340;XM_005388744;XM_013516362 XP_005388801;XP_013371816 MODEL 8820373 protein-coding Thsd1 thrombospondin type 1 domain containing 1 ENCODES a protein that exhibits extracellular matrix binding (ortholog); INVOLVED IN focal adhesion assembly (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH aortic aneurysm (ortholog); Hydrops Fetalis (ortholog); intracranial berry aneurysm 12 (ortholog); FOUND IN cell periphery (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955431 5472209 5495937 + 102010933 AGCD01030033;GBCE01160079;GBDK01230446;XM_005387630 XP_005387687 MODEL 8797202 protein-coding LOC102025908 uncharacterized LOC102025908 NW_004955478 5680983 5685037 - 102025908 AGCD01055883;AGCD01055884;GBDJ01293934;XM_005402291 XP_005402348 MODEL 8866815 ncrna LOC102028609 uncharacterized LOC102028609 NW_004955404 15865591 15869254 + 102028609 AGCD01003550;XR_259312 MODEL 9055110 pseudo LOC102015725 E3 ubiquitin-protein ligase RNF130 pseudogene NW_004955419 5457561 5458697 - 102015725 AGCD01019810 MODEL 8873618 pseudo LOC102008491 60S ribosomal protein L24 pseudogene NW_004955403 25635577 25636027 + 102008491 AGCD01002291 MODEL 8817216 pseudo LOC102006599 protein kinase C iota type-like NW_004955430 12745518 12748115 - 102006599 AGCD01029509;AGCD01029510 MODEL 8700530 protein-coding Tp53i13 tumor protein p53 inducible protein 13 INVOLVED IN negative regulation of cell cycle (ortholog); response to UV (ortholog); response to xenobiotic stimulus (ortholog); FOUND IN cytoplasm (ortholog) NW_004955481 3681495 3685051 - 102010584 AGCD01056911;GBCE01029826;XM_005402678 XP_005402735 MODEL 8706358 protein-coding Pdha1 pyruvate dehydrogenase E1 subunit alpha 1 ENCODES a protein that exhibits pyruvate dehydrogenase (acetyl-transferring) activity (ortholog); INVOLVED IN pyruvate decarboxylation to acetyl-CoA (ortholog); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; Leigh disease pathway; ASSOCIATED WITH Disease Progression (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); protein-containing complex (ortholog) NW_004955586 98492 114927 - 102005758 AGCD01076020;AGCD01076021;GBBH01166354;XM_005414433 XP_005414490 MODEL 8926718 pseudo LOC102011145 protein salvador homolog 1 pseudogene NW_004955532 3962130 3963932 - 102011145 AGCD01070305 MODEL 8904830 ncrna LOC102026253 uncharacterized LOC102026253 NW_004955436 13503386 13544253 + 102026253 AGCD01033858;AGCD01033859;GBCE01101438;XR_261790 MODEL 9014468 protein-coding LOC102023462 chromosome unknown open reading frame, human C11orf16 NW_004955414 24675240 24685494 - 102023462 AGCD01015552;AGCD01015553;GBBH01060385;XM_005380242;XM_005380243;XM_013512042;XM_013512043;XM_013512044 XP_005380299;XP_005380300;XP_013367496;XP_013367497;XP_013367498 MODEL 8950509 pseudo LOC102027953 ubiquitin-fold modifier 1 pseudogene NW_004955410 32922927 32923186 + 102027953 AGCD01011354;XR_259897 MODEL 39132049 snorna SNORA62 Small nucleolar RNA SNORA62/SNORA6 family 8897736 ncrna LOC102007002 uncharacterized LOC102007002 NW_004955470 2465067 2474365 - 102007002 AGCD01052678;GBDF01193194;XR_001237015;XR_001237016 MODEL 8750824 protein-coding Trim46 tripartite motif containing 46 INVOLVED IN anterograde synaptic vesicle transport (ortholog); axonogenesis (ortholog); microtubule bundle formation (ortholog); FOUND IN axon initial segment (ortholog); main axon (ortholog); proximal neuron projection (ortholog) NW_004955545 1646244 1656825 + 102028020 AGCD01071864;GBDF01295696;XM_005411579;XM_005411581;XM_005411582;XM_005411583;XM_005411584 XP_005411636;XP_005411638;XP_005411639;XP_005411640;XP_005411641 MODEL 8763213 protein-coding Prr19 proline rich 19 FOUND IN chromosome (ortholog); nucleus (ortholog) NW_004955555 605333 610104 - 102024386 AGCD01073039;GBBH01137288;XM_005412367;XM_005412368;XM_005412369;XM_005412370;XM_005412371;XM_005412372 XP_005412424;XP_005412425;XP_005412426;XP_005412427;XP_005412428;XP_005412429 MODEL 8966292 protein-coding Emp1 epithelial membrane protein 1 INVOLVED IN apoptotic process (ortholog); bleb assembly (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Prostatic Neoplasms (ortholog); Spontaneous Abortions (ortholog); FOUND IN plasma membrane (ortholog) NW_004955413 10062621 10081551 + 102022803 AGCD01013925;GBCE01001043;XM_005378983 XP_005379040 MODEL 8890664 protein-coding Slc16a12 solute carrier family 16 member 12 ENCODES a protein that exhibits creatine transmembrane transporter activity (ortholog); uniporter activity (ortholog); INVOLVED IN creatine transmembrane transport (ortholog); creatinine metabolic process (ortholog); ASSOCIATED WITH cataract (ortholog); cataract 47 (ortholog); coloboma (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955425 3474814 3560138 + 102015744 AGCD01025290;AGCD01025291;GBCQ01098505;XM_005385849 XP_005385906 MODEL 10340616 ncrna LOC106147099 uncharacterized LOC106147099 NW_004955518 2220337 2275347 + 106147099 AGCD01067772;AGCD01067773;AGCD01067774;AGCD01067775;GBDF01041824;XR_001231849 MODEL 8975937 ncrna LOC102030394 uncharacterized LOC102030394 NW_004955461 538849 561089 + 102030394 AGCD01048795;XR_263071 MODEL 8951458 pseudo LOC102012743 spliceosome-associated protein CWC15 homolog pseudogene NW_004955409 26641679 26646568 + 102012743 AGCD01010196 MODEL 8738475 protein-coding LOC102010775 olfactory receptor 1468-like NW_004955408 1596483 1597001 + 102010775 AGCD01007966;GBDF01134956;XM_005376562 XP_005376619 MODEL 8954927 protein-coding LOC102024473 chromosome unknown open reading frame, human C11orf96 ASSOCIATED WITH intellectual disability (ortholog) NW_004955422 3639798 3641449 - 102024473 AGCD01022525;AGCD01022526;GBCQ01062880;GBDJ01000004;XM_005384081 XP_005384138 MODEL 8835598 protein-coding Paxip1 PAX interacting protein 1 INVOLVED IN adipose tissue development (ortholog); chorion development (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN chromosome (ortholog); histone methyltransferase complex (ortholog); MLL3/4 complex (ortholog) NW_004955491 8177422 8219764 - 102016063 AGCD01060609;GBBH01150052;GBDF01118963;XM_013504635 XP_013360089 MODEL 8858240 protein-coding Slc5a3 solute carrier family 5 member 3 ENCODES a protein that exhibits D-glucose:sodium symporter activity (ortholog); fucose transmembrane transporter activity (ortholog); myo-inositol:sodium symporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); fucose transmembrane transport (ortholog); inositol metabolic process (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); coronary artery disease (ortholog); renal cell carcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955407 33460238 33511889 + 102025979 AGCD01007701;GBDF01234314;XM_005375699 XP_005375756 MODEL 8818554 protein-coding Limd1 LIM domain containing 1 ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN miRNA-mediated gene silencing by inhibition of translation (ortholog); miRNA-mediated post-transcriptional gene silencing (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); FOUND IN adherens junction (ortholog); cytoplasm (ortholog); focal adhesion (ortholog) NW_004955420 26290792 26328637 - 102007438 AGCD01021398;AGCD01021399;AGCD01021400;GBBH01126814;GBCE01142249;XM_005383471 XP_005383528 MODEL 9059939 protein-coding Smc6 structural maintenance of chromosomes 6 ENCODES a protein that exhibits DNA secondary structure binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN cellular senescence (ortholog); DNA damage response (ortholog); host-mediated suppression of viral genome replication (ortholog); ASSOCIATED WITH Laterality Defects, Autosomal Dominant (ortholog); FOUND IN chromosome, centromeric region (ortholog); chromosome, telomeric region (ortholog); interchromatin granule (ortholog) NW_004955469 456023 552794 - 102006648 AGCD01052223;AGCD01052224;AGCD01052225;AGCD01052226;AGCD01052227;GBBH01150724;GBDK01281602;XM_013522645 XP_013378099 MODEL 8854169 pseudo LOC102028612 nascent polypeptide-associated complex subunit alpha pseudogene NW_004955453 1184157 1184803 - 102028612 AGCD01044607 MODEL 8718414 protein-coding Thsd4 thrombospondin type 1 domain containing 4 INVOLVED IN elastic fiber assembly (ortholog); microfibril assembly (ortholog); ASSOCIATED WITH asthma (ortholog); Familial Thoracic Aortic Aneurysm 12 (ortholog); substance-related disorder (ortholog); FOUND IN extracellular matrix (ortholog); microfibril (ortholog) NW_004955450 5296670 5827252 - 102009131 AGCD01042499;AGCD01042500;AGCD01042501;AGCD01042502;AGCD01042503;AGCD01042504;AGCD01042505;AGCD01042506;AGCD01042507;AGCD01042508;AGCD01042509;AGCD01042510;GBBH01142626;GBCQ01066873;XM_013518949 XP_013374403 MODEL 8712392 protein-coding LOC102025910 olfactory receptor-like protein DTMT NW_004955481 29339 30283 - 102025910 AGCD01056777;XM_005402548 XP_005402605 MODEL 39133321 snrna U4 U4 spliceosomal RNA 8943241 protein-coding LOC102011150 uncharacterized LOC102011150 NW_004955440 3381418 3382941 - 102011150 AGCD01036241;GBDF01052510;XM_005390767;XM_013517492 XP_005390824;XP_013372946 MODEL 8924632 protein-coding Prdm2 PR/SET domain 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); histone H3K9 methyltransferase activity (ortholog); INVOLVED IN determination of adult lifespan (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH amphetamine abuse (ortholog); Contracture (ortholog); Thyroid Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955527 4005410 4105376 - 102017379 AGCD01069493;AGCD01069494;AGCD01069495;AGCD01069496;GBBH01115652;GBBH01165184;XM_013507399 XP_013362853 MODEL 8824623 protein-coding Pxt1 peroxisomal testis enriched protein 1 INVOLVED IN positive regulation of apoptotic process (ortholog); spermatogenesis (ortholog); FOUND IN nucleus (ortholog); peroxisome (ortholog) NW_004955437 4096740 4105794 - 102009986 AGCD01034360;GBDF01177457;XM_005389592;XM_005389593 XP_005389649;XP_005389650 MODEL 9019318 protein-coding LOC102006600 ATP-binding cassette sub-family G member 2-like NW_004955433 125610 276438 + 102006600 AGCD01031303;AGCD01031304;AGCD01031305;AGCD01031306;AGCD01031307;AGCD01031308;AGCD01031309;AGCD01031310;AGCD01031311;GBCE01134192;XM_013516145;XM_013516146;XM_013516147;XM_013516148;XM_013516149;XM_013516150;XM_013516151;XM_013516152;XM_013516153;XM_013516154;XM_013516155;XM_013516156;XM_013516157;XM_013516158;XM_013516159;XM_013516160;XM_013516161;XM_013516162;XR_001234729;XR_001234730;XR_001234731;XR_001234732 XP_013371599;XP_013371600;XP_013371601;XP_013371602;XP_013371603;XP_013371604;XP_013371605;XP_013371606;XP_013371607;XP_013371608;XP_013371609;XP_013371610;XP_013371611;XP_013371612;XP_013371613;XP_013371614;XP_013371615;XP_013371616 MODEL 8980015 protein-coding Sec14l1 SEC14 like lipid binding 1 ENCODES a protein that exhibits protein sequestering activity (ortholog); RIG-I binding (ortholog); INVOLVED IN choline transport (ortholog); negative regulation of cytoplasmic pattern recognition receptor signaling pathway (ortholog); negative regulation of RIG-I signaling pathway (ortholog); ASSOCIATED WITH Monoclonal B-Cell Lymphocytosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955506 5159090 5231827 - 102016619 AGCD01065352;AGCD01065353;AGCD01065354;AGCD01065355;AGCD01065356;AGCD01065357;AGCD01065358;AGCD01065359;GBDK01074976;XM_013506067 XP_013361521 MODEL 8856656 ncrna LOC102003760 uncharacterized LOC102003760 NW_004955475 4403226 4412590 - 102003760 AGCD01054876;AGCD01054877;GBDK01406757;XR_001230760;XR_001230761;XR_263610 MODEL 9068082 protein-coding LOC102010369 galectin-9-like NW_004955481 5706510 5744393 - 102010369 AGCD01057000;AGCD01057001;AGCD01057002;GBCE01150879;XM_013503348;XM_013503349 XP_013358802;XP_013358803 MODEL 8894931 protein-coding Ppfibp1 PPFIB scaffold protein 1 INVOLVED IN cortical microtubule organization (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); Neurodevelopmental Disorder with Seizures, Microcephaly, and Brain Abnormalities (ortholog); FOUND IN cell cortex (ortholog); plasma membrane (ortholog) NW_004955505 7191751 7394506 - 102021579 AGCD01065201;AGCD01065202;AGCD01065203;AGCD01065204;GBCQ01071728;XM_005407163;XM_005407168;XM_005407169;XM_013505927;XM_013505928;XM_013505929;XM_013505930;XM_013505931;XM_013505932;XM_013505933 XP_005407220;XP_005407225;XP_005407226;XP_013361381;XP_013361382;XP_013361383;XP_013361384;XP_013361385;XP_013361386;XP_013361387 MODEL 9059749 protein-coding Riok1 RIO kinase 1 ENCODES a protein that exhibits protein serine kinase activity (ortholog); INVOLVED IN maturation of SSU-rRNA (ortholog); positive regulation of rRNA processing (ortholog); ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); methylosome (ortholog) NW_004955465 6487078 6506108 - 102028729 AGCD01050443;GBDF01084760;XM_005398856 XP_005398913 MODEL 8941820 ncrna LOC102019237 uncharacterized LOC102019237 NW_004955405 40081412 40101110 - 102019237 AGCD01005504;GBDF01173603;XR_259450 MODEL 8793884 protein-coding Rbfox2 RNA binding fox-1 homolog 2 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); mRNA binding (ortholog); RNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); cardiac conduction (ortholog); cellular response to angiotensin (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); congenital heart disease (ortholog); congestive heart failure (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955413 22034048 22288430 - 102008713 AGCD01014279;AGCD01014280;AGCD01014281;AGCD01014282;AGCD01014283;AGCD01014284;AGCD01014285;AGCD01014286;AGCD01014287;AGCD01014288;GBBH01172118;GBDJ01174673;XM_005379131;XM_005379139;XM_005379140;XM_005379141;XM_013511499;XM_013511500;XM_013511501;XM_013511502;XM_013511503;XM_013511504;XM_013511505 XP_005379188;XP_005379196;XP_005379197;XP_005379198;XP_013366953;XP_013366954;XP_013366955;XP_013366956;XP_013366957;XP_013366958;XP_013366959 MODEL 8788629 pseudo LOC102018791 zinc finger and BTB domain-containing protein 16-like NW_004955670 20782 22615 - 102018791 AGCD01077935 MODEL 8793972 protein-coding LOC102009615 translation initiation factor IF-2-like NW_004955420 29366247 29393153 - 102009615 AGCD01021498;AGCD01021499;GBBH01125290;XM_013513409;XR_001233708 XP_013368863 MODEL 8927694 protein-coding Plcxd2 phosphatidylinositol specific phospholipase C X domain containing 2 NW_004955427 12094403 12143557 + 102021373 AGCD01027203;AGCD01027204;GBDF01277030;XM_005386368;XM_005386369;XM_013515219 XP_005386425;XP_005386426;XP_013370673 MODEL 9015206 ncrna LOC102015726 uncharacterized LOC102015726 NW_004955485 804026 805336 - 102015726 AGCD01058459;GBDF01265224;XR_263902 MODEL 10373515 protein-coding LOC106149941 uncharacterized LOC106149941 NW_004955458 3649750 3653101 - 106149941 AGCD01047331;AGCD01047332;XM_013520803 XP_013376257 MODEL 8876262 pseudo LOC102005539 integrin beta-1-like NW_004955602 28357 31946 + 102005539 AGCD01076761 MODEL 8913704 protein-coding LOC102024476 melanoma-associated antigen 10-like NW_004955498 4679377 4680138 + 102024476 AGCD01063015;XM_005406485 XP_005406542 MODEL 9003648 protein-coding LOC102028964 olfactory receptor 1L6-like NW_004955481 13014 14585 - 102028964 AGCD01056774;XM_005402909 XP_005402966 MODEL 39133307 snorna SNORA62 Small nucleolar RNA SNORA62/SNORA6 family 8803814 protein-coding Limd2 LIM domain containing 2 ASSOCIATED WITH Breast Neoplasms (ortholog); Neoplasm Recurrence, Local (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955478 8120405 8121826 + 102024332 AGCD01056012;GBCQ01129620;GBDI01018647;XM_005402202 XP_005402259 MODEL 8743194 protein-coding Bsdc1 BSD domain containing 1 FOUND IN Golgi apparatus (ortholog) NW_004955452 10694113 10723342 - 102021513 AGCD01044289;AGCD01044290;GBCQ01037702;XM_005395063 XP_005395120 MODEL 39133322 snrna U4 U4 spliceosomal RNA 8851126 pseudo LOC102025911 60S ribosomal protein L23a pseudogene NW_004955482 3503687 3504161 - 102025911 AGCD01057266 MODEL 8716160 protein-coding Trim47 tripartite motif containing 47 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); regulation of postsynapse assembly (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Experimental Neoplasms (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955506 6379088 6383671 + 102010607 AGCD01065416;GBDK01285018;XM_005407473 XP_005407530 MODEL 8838388 pseudo LOC102017642 thioredoxin pseudogene NW_004955465 2024398 2024702 - 102017642 AGCD01050347 MODEL 8947804 protein-coding Rad23b RAD23 nucleotide excision repair protein B ENCODES a protein that exhibits DNA damage sensor activity (ortholog); histone H4K20 demethylase activity (ortholog); polyubiquitin modification-dependent protein binding (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); DNA damage response (ortholog); embryonic organ development (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH Craniofacial Abnormalities (ortholog); male infertility (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955419 19428415 19473181 - 102024570 AGCD01020211;AGCD01020212;AGCD01020213;AGCD01020214;GBDF01262473;XM_005382764 XP_005382821 MODEL 8912217 ncrna LOC102021735 uncharacterized LOC102021735 NW_004955408 6117602 6136953 + 102021735 AGCD01008164;GBDF01095616;XR_001232266 MODEL 9020705 ncrna LOC102008492 uncharacterized LOC102008492 NW_004955405 32452517 32475010 - 102008492 AGCD01005333;GBDJ01347641;XR_259420 MODEL 8881677 protein-coding Tp53i3 tumor protein p53 inducible protein 3 ENCODES a protein that exhibits quinone reductase (NADPH) activity (ortholog); INVOLVED IN apoptotic process (ortholog); reactive oxygen species biosynthetic process (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); autism spectrum disorder (ortholog); carcinoma (ortholog) NW_004955469 6287442 6298944 - 102028848 AGCD01052377;AGCD01052378;AGCD01052379;GBDF01149068;XM_005400567 XP_005400624 MODEL 9027073 pseudo LOC102027265 protein LSM14 homolog A pseudogene NW_004955453 2502794 2504978 - 102027265 AGCD01044630 MODEL 8822421 protein-coding Ppfibp2 PPFIB scaffold protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Familial Prostate Cancer (ortholog); Prostatic Neoplasms (ortholog); FOUND IN presynapse (ortholog) NW_004955414 23269050 23418804 + 102007883 AGCD01015496;AGCD01015497;GBDF01003858;XM_005380195;XM_005380196;XM_005380198;XM_013511943;XM_013511944;XM_013511945;XM_013511946;XM_013511948;XM_013511949;XM_013511950;XM_013511951;XM_013511952;XM_013511953 XP_005380252;XP_005380253;XP_005380255;XP_013367397;XP_013367398;XP_013367399;XP_013367400;XP_013367402;XP_013367403;XP_013367404;XP_013367405;XP_013367406;XP_013367407 MODEL 8747332 protein-coding Paxx PAXX non-homologous end joining factor ENCODES a protein that exhibits DNA polymerase binding (ortholog); identical protein binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN DNA damage response (ortholog); double-strand break repair via nonhomologous end joining (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); epilepsy (ortholog); FOUND IN chromosome (ortholog); cytoplasm (ortholog); Ku70:Ku80 complex (ortholog) NW_004955513 5017971 5019489 + 102028998 AGCD01066950;GBCQ01041922;XM_005408570 XP_005408627 MODEL 8757868 pseudo LOC102026267 60S ribosomal protein L12-like NW_004955552 380253 400952 + 102026267 AGCD01072733 MODEL 10084145 ncrna LOC106148198 uncharacterized LOC106148198 NW_004955403 19526670 19531573 - 106148198 AGCD01002133;GBDJ01042631;XR_001233416 MODEL 9036095 protein-coding LOC102011568 olfactory receptor 1013-like NW_004955511 1833015 1833950 + 102011568 AGCD01066381;XM_005407979 XP_005408036 MODEL 8951663 protein-coding Snx1 sorting nexin 1 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); identical protein binding (ortholog); insulin receptor binding (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); endosomal transport (ortholog); endosome membrane tubulation (ortholog); PARTICIPATES IN retromer-mediated pathway; FOUND IN cytoplasm (ortholog); dendritic spine (ortholog); early endosome (ortholog) NW_004955450 11266712 11306014 - 102020402 AGCD01042653;GBDK01008578;XM_005393766;XM_013518974;XM_013518975;XM_013518976;XM_013518977;XM_013518978;XM_013518979 XP_005393823;XP_013374428;XP_013374429;XP_013374430;XP_013374431;XP_013374432;XP_013374433 MODEL 8730520 ncrna LOC102027954 uncharacterized LOC102027954 NW_004955411 5511546 5521040 - 102027954 AGCD01011648;AGCD01011649;GBDI01044105;XR_001232831;XR_259922 MODEL 10177620 pseudo LOC106149942 uncharacterized LOC106149942 NW_004955458 4475421 4533274 - 106149942 AGCD01047416;AGCD01047417;AGCD01047418 MODEL 8900505 protein-coding Sertm1 serine rich and transmembrane domain containing 1 NW_004955431 9363917 9384620 - 102027666 AGCD01030177;GBBH01024568;XM_005387677;XM_005387678;XM_005387679 XP_005387734;XP_005387735;XP_005387736 MODEL 9066994 protein-coding Rexo4 REX4 homolog, 3'-5' exonuclease ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); double-stranded DNA binding (ortholog); endonuclease activity (ortholog); INVOLVED IN DNA catabolic process (ortholog); DNA repair (ortholog); ASSOCIATED WITH Habitual Abortions (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955513 2745220 2754927 - 102015878 AGCD01066888;GBBH01077836;XM_005408440;XM_005408443;XM_005408444;XM_005408445 XP_005408497;XP_005408500;XP_005408501;XP_005408502 MODEL 8822652 protein-coding Wdr18 WD repeat domain 18 FOUND IN nucleoplasm (ortholog); nucleus (ortholog); rixosome complex (ortholog) NW_004955495 6869543 6877058 - 102014147 AGCD01062099;GBCQ01121381;XM_005406002 XP_005406059 MODEL 8943639 pseudo LOC102006611 uncharacterized protein C11orf57-like NW_004955439 11295688 11296585 + 102006611 AGCD01035896 MODEL 8904406 protein-coding LOC102030396 uncharacterized LOC102030396 NW_004955463 8308987 8503483 - 102030396 AGCD01049757;AGCD01049758;AGCD01049759;AGCD01049760;AGCD01049761;AGCD01049762;AGCD01049763;XM_013521485 XP_013376939 MODEL 8704538 protein-coding Pxylp1 2-phosphoxylose phosphatase 1 ENCODES a protein that exhibits phosphatase activity (ortholog); INVOLVED IN chondroitin sulfate proteoglycan biosynthetic process (ortholog); glycosaminoglycan biosynthetic process (ortholog); positive regulation of heparan sulfate proteoglycan biosynthetic process (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955508 4390647 4449782 - 102020038 AGCD01065866;GBDJ01388065;XM_005407772;XM_005407773;XM_013506265;XM_013506266;XM_013506267;XM_013506268;XM_013506269;XM_013506270;XM_013506271;XM_013506272;XM_013506273;XM_013506274;XM_013506275;XM_013506276;XM_013506277 XP_005407829;XP_005407830;XP_013361719;XP_013361720;XP_013361721;XP_013361722;XP_013361723;XP_013361724;XP_013361725;XP_013361726;XP_013361727;XP_013361728;XP_013361729;XP_013361730;XP_013361731 MODEL 8716371 ncrna LOC102019238 uncharacterized LOC102019238 NW_004955453 3959312 3961658 - 102019238 AGCD01044670;GBDJ01054424;XR_262710 MODEL 8935851 protein-coding Pdha2 pyruvate dehydrogenase E1 subunit alpha 2 ENCODES a protein that exhibits pyruvate dehydrogenase (acetyl-transferring) activity (ortholog); INVOLVED IN pyruvate decarboxylation to acetyl-CoA (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH azoospermia (ortholog); spermatogenic failure 1 (ortholog); spermatogenic failure 70 (ortholog); FOUND IN mitochondrion (ortholog); pyruvate dehydrogenase complex (ortholog) NW_004955405 6383088 6383946 + 102016014 AGCD01004696;GBDF01011264;XM_005374677 XP_005374734 MODEL 8912072 pseudo LOC102018795 aldose reductase-related protein 2 pseudogene NW_004955404 10139110 10140052 + 102018795 AGCD01003376 MODEL 8884247 protein-coding Bsg basigin (Ok blood group) ENCODES a protein that exhibits protein carrier activity (ortholog); signaling receptor activity (ortholog); virus receptor activity (ortholog); INVOLVED IN decidualization (ortholog); embryo implantation (ortholog); endothelial tube morphogenesis (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); breast ductal carcinoma (ortholog); FOUND IN acrosomal membrane (ortholog); basolateral plasma membrane (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955495 7148806 7156296 - 102023491 AGCD01062122;GBCC01008459;XM_005406036;XM_013505312 XP_005406093;XP_013360766 MODEL 8756380 protein-coding Pstpip1 proline-serine-threonine phosphatase interacting protein 1 ENCODES a protein that exhibits actin binding (ortholog); identical protein binding (ortholog); protein phosphatase binding (ortholog); ASSOCIATED WITH acne (ortholog); autoinflammatory syndrome with cytopenia, hyperzincemia, and hypercalprotectinemia (ortholog); Behcet's disease (ortholog); FOUND IN actomyosin contractile ring (ortholog); cleavage furrow (ortholog); cytoplasm (ortholog) NW_004955450 1876553 1908269 + 102019551 AGCD01042371;GBDK01231269;XM_005393478;XM_005393479;XM_005393481;XM_013519024 XP_005393535;XP_005393536;XP_005393538;XP_013374478 MODEL 9016846 protein-coding LOC102023464 olfactory receptor 51F2-like NW_004955414 20334900 20338787 - 102023464 AGCD01015368;XM_013511718 XP_013367172 MODEL 8913282 protein-coding LOC102007003 ubiquilin-3 NW_004955414 21412848 21415565 - 102007003 AGCD01015418;GBDF01007353;XM_005380091 XP_005380148 MODEL 8920125 protein-coding Plcxd3 phosphatidylinositol specific phospholipase C X domain containing 3 FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); synapse (ortholog) NW_004955426 25563222 25719939 - 102026768 AGCD01026723;AGCD01026724;AGCD01026725;AGCD01026726;AGCD01026727;AGCD01026728;GBCQ01014740;XM_005386247 XP_005386304 MODEL 9049093 protein-coding Emp2 epithelial membrane protein 2 ENCODES a protein that exhibits integrin binding (ortholog); kinase binding (ortholog); INVOLVED IN actin filament organization (ortholog); actin-mediated cell contraction (ortholog); apoptotic process (ortholog); ASSOCIATED WITH nephrotic syndrome type 10 (ortholog); placental insufficiency (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); caveola (ortholog) NW_004955442 7826967 7862035 + 102009227 AGCD01037628;GBCB01040537;XM_005391190 XP_005391247 MODEL 8786262 protein-coding LOC102011152 serine protease 29-like NW_004955442 15971410 15973505 + 102011152 AGCD01037889;XM_005391589 XP_005391646 MODEL 8786017 pseudo LOC102024477 serine/threonine-protein kinase Nek2 pseudogene NW_004955424 14868186 14869112 + 102024477 AGCD01024661 MODEL 10080215 protein-coding LOC106147100 tastin-like NW_004955518 200978 201787 + 106147100 AGCD01067721;GBDJ01388183;XM_013506968 XP_013362422 MODEL 9013002 protein-coding Prdm4 PR/SET domain 4 ENCODES a protein that exhibits death receptor binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); histone methyltransferase binding (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); cellular response to nutrient (ortholog); negative regulation of cell growth (ortholog); FOUND IN cytoplasm (ortholog); histone methyltransferase complex (ortholog); nucleoplasm (ortholog) NW_004955405 41335019 41354625 - 102028263 AGCD01005547;GBCB01088054;XM_005374642;XM_005374643 XP_005374699;XP_005374700 MODEL 8950800 protein-coding LOC102012744 cleavage stimulation factor subunit 2 tau variant-like NW_004955462 1470966 1474745 + 102012744 AGCD01049120;XM_013521365 XP_013376819 MODEL 8768813 protein-coding LOC102027956 sodium-dependent glucose transporter 1C-like NW_004955411 36029729 36043154 + 102027956 AGCD01012463;GBDF01260550;XM_013510835 XP_013366289 MODEL 9042655 protein-coding Sec14l2 SEC14 like lipid binding 2 ENCODES a protein that exhibits enzyme activator activity (ortholog); transferase activity, transferring alkyl or aryl (other than methyl) groups (ortholog); INVOLVED IN positive regulation of cholesterol biosynthetic process (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955455 4637062 4660064 + 102020881 AGCD01045684;GBDF01123633;XM_005396260 XP_005396317 MODEL 8782713 protein-coding Slc16a13 solute carrier family 16 member 13 ASSOCIATED WITH Short Stature with Nonspecific Skeletal Abnormalities 1 (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955467 9894833 9900295 - 102006645 AGCD01051535;GBDJ01261667;XM_005399572;XM_013522101;XM_013522102 XP_005399629;XP_013377555;XP_013377556 MODEL 8870338 pseudo LOC102010777 cyclin-dependent kinase 4 pseudogene NW_004955458 15031076 15032155 + 102010777 AGCD01047860 MODEL 8751440 protein-coding Runx2 RUNX family transcription factor 2 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); chromatin binding (ortholog); chromatin DNA binding (ortholog); INVOLVED IN BMP signaling pathway (ortholog); bone regeneration (ortholog); cell maturation (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Aortic Calcification (ortholog); Bone Fractures (ortholog); breast cancer (ortholog); FOUND IN chromatin (ortholog); core-binding factor complex (ortholog); cytoplasm (ortholog) NW_004955437 10598145 10885858 + 102025170 AGCD01034563;AGCD01034564;AGCD01034565;AGCD01034566;AGCD01034567;AGCD01034568;GBCE01001577;XM_005389822;XM_005389823;XM_005389831;XM_013516854;XM_013516855;XM_013516856;XM_013516857 XP_005389879;XP_005389880;XP_005389888;XP_013372308;XP_013372309;XP_013372310;XP_013372311 MODEL 8978280 protein-coding Riok2 RIO kinase 2 ENCODES a protein that exhibits protein serine kinase activity (ortholog); INVOLVED IN maturation of SSU-rRNA (ortholog); positive regulation of ribosomal small subunit export from nucleus (ortholog); positive regulation of rRNA processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; FOUND IN cytoplasm (ortholog); preribosome, small subunit precursor (ortholog) NW_004955418 15487248 15509490 + 102007996 AGCD01019106;GBDI01215559;XM_005382217;XM_005382219 XP_005382274;XP_005382276 MODEL 9047114 protein-coding Trim54 tripartite motif containing 54 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN negative regulation of microtubule depolymerization (ortholog); FOUND IN microtubule associated complex (ortholog) NW_004955469 9258946 9277275 + 102026740 AGCD01052498;GBCB01004527;XM_005400479 XP_005400536 MODEL 8795497 ncrna LOC102009616 uncharacterized LOC102009616 NW_004955487 8301569 8308007 + 102009616 AGCD01059433;GBDF01280847;XR_263987 MODEL 9011967 protein-coding Slc5a4 solute carrier family 5 member 4 ENCODES a protein that exhibits D-glucose:sodium symporter activity (ortholog); low-affinity D-glucose:sodium symporter activity (ortholog); proton transmembrane transporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); proton transmembrane transport (ortholog); FOUND IN plasma membrane (ortholog) NW_004955455 6250161 6308688 - 102018565 AGCD01045782;AGCD01045783;AGCD01045784;AGCD01045785;GBDI01245806;XM_013520298 XP_013375752 MODEL 8837886 pseudo LOC102028613 high mobility group protein B1 pseudogene NW_004955453 5190067 5191191 - 102028613 AGCD01044706 MODEL 8959389 pseudo LOC102015743 mitochondrial dynamics protein MID51 pseudogene NW_004955424 14961240 14963238 + 102015743 AGCD01024669 MODEL 8812809 protein-coding Smchd1 structural maintenance of chromosomes flexible hinge domain containing 1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN dosage compensation by inactivation of X chromosome (ortholog); inactivation of paternal X chromosome by genomic imprinting (ortholog); negative regulation of double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH Anosmia (ortholog); Arhinia, Choanal Atresia, and Microphthalmia (ortholog); Chediak-Higashi syndrome (ortholog); FOUND IN Barr body (ortholog); chromosome (ortholog); chromosome, telomeric region (ortholog) NW_004955402 7544265 7661191 - 102016334 AGCD01000178;AGCD01000179;AGCD01000180;GBBH01005054;XM_005373146 XP_005373203 MODEL 8739736 protein-coding Prr22 proline rich 22 NW_004955495 3660380 3662642 + 102022615 AGCD01061874;GBDJ01128662;XM_005405753;XM_013505196 XP_005405810;XP_013360650 MODEL 8905595 protein-coding LOC102005543 PRAME family member 20-like NW_004955615 219115 226336 + 102005543 AGCD01077251;XM_013510139 XP_013365593 MODEL 8938628 protein-coding Thsd7a thrombospondin type 1 domain containing 7A INVOLVED IN actin cytoskeleton organization (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog); podocyte foot (ortholog) NW_004955432 17896273 18111903 - 102003051 AGCD01031132;AGCD01031133;AGCD01031134;GBCE01162918;GBDJ01062851;XM_005388151 XP_005388208 MODEL 8864474 ncrna LOC102027267 uncharacterized LOC102027267 NW_004955406 40744307 40746327 - 102027267 AGCD01006667;GBDF01208249;XR_259533 MODEL 8744606 ncrna LOC102028965 uncharacterized LOC102028965 NW_004955418 21867252 21927757 + 102028965 AGCD01019276;AGCD01019277;AGCD01019278;GBDF01015580;XR_001233492;XR_260578 MODEL 10167912 protein-coding LOC106148199 uncharacterized LOC106148199 NW_004955417 26402918 26406341 - 106148199 AGCD01018510;GBBH01173373;XM_013512735 XP_013368189 MODEL 8840530 protein-coding LOC102003764 collagen alpha-1(III) chain-like NW_004955478 11060155 11061599 - 102003764 AGCD01056157;GBCB01001731;XM_005402303 XP_005402360 MODEL 39133324 snrna U4 U4 spliceosomal RNA 10251171 pseudo LOC106149943 retinol dehydrogenase 16-like NW_004955458 4670971 4690548 - 106149943 AGCD01047425;AGCD01047426;AGCD01047427;AGCD01047428;AGCD01047429;AGCD01047430 MODEL 8946358 pseudo LOC102007005 etoposide-induced protein 2.4 homolog pseudogene NW_004955414 3807141 3816292 + 102007005 AGCD01014841 MODEL 8981221 protein-coding Rbfox3 RNA binding fox-1 homolog 3 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN regulation of alternative mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); brain infarction (ortholog); generalized epilepsy (ortholog); FOUND IN cytoplasm (ortholog); neuronal cell body (ortholog); nucleoplasm (ortholog) NW_004955506 3243637 3646789 + 102024144 AGCD01065315;AGCD01065316;AGCD01065317;AGCD01065318;GBDK01028890;XM_005407339;XM_005407340;XM_005407342;XM_013506116;XM_013506117;XM_013506118 XP_005407396;XP_005407397;XP_005407399;XP_013361570;XP_013361571;XP_013361572 MODEL 8756295 protein-coding Rad50 RAD50 double strand break repair protein ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); ATP hydrolysis activity (ortholog); DNA binding (ortholog); INVOLVED IN chromosome organization (ortholog); chromosome organization involved in meiotic cell cycle (ortholog); DNA damage response (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; homologous recombination pathway of double-strand break repair; ASSOCIATED WITH asthma (ortholog); breast cancer (ortholog); Breast Cancer, Familial (ortholog); FOUND IN BRCA1-C complex (ortholog); chromatin (ortholog); chromosome (ortholog) NW_004955408 3953801 4035494 + 102015290 AGCD01008084;AGCD01008085;AGCD01008086;GBCQ01175938;GBDF01188235;XM_013508334;XM_013508338 XP_013363788;XP_013363792 MODEL 8902792 pseudo LOC102006616 renin receptor pseudogene NW_004955442 7678453 7681635 + 102006616 AGCD01037628;XM_005391180 MODEL 8805324 pseudo LOC102021737 eukaryotic initiation factor 4A-I-like NW_004955408 16045127 16045682 + 102021737 AGCD01008432 MODEL 8801756 protein-coding Wdr19 WD repeat domain 19 ENCODES a protein that exhibits protein carrier activity (ortholog); INVOLVED IN cell morphogenesis (ortholog); cilium assembly (ortholog); digestive system development (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); asphyxiating thoracic dystrophy 5 (ortholog); FOUND IN cilium (ortholog); intraciliary transport particle A (ortholog); motile cilium (ortholog) NW_004955443 8053847 8122918 - 102028692 AGCD01038308;AGCD01038309;AGCD01038310;GBCQ01123355;XM_005391986 XP_005392043 MODEL 8706896 protein-coding Pycr1 pyrroline-5-carboxylate reductase 1 ENCODES a protein that exhibits identical protein binding (ortholog); pyrroline-5-carboxylate reductase activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); L-glutamate catabolic process (ortholog); L-glutamine catabolic process (ortholog); ASSOCIATED WITH Autosomal Recessive Cutis Laxa (ortholog); autosomal recessive cutis laxa type IIB (ortholog); autosomal recessive cutis laxa type IIIB (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); pyrroline-5-carboxylate reductase complex (ortholog) NW_004955506 1231874 1236550 + 102023056 AGCD01065251;GBCB01119841;XM_005407242;XM_005407244;XM_013506062;XM_013506063 XP_005407299;XP_005407301;XP_013361516;XP_013361517 MODEL 8760632 protein-coding LOC102019240 quinone oxidoreductase-like protein 2 NW_004955406 17523170 17559805 - 102019240 AGCD01006011;AGCD01006012;GBCQ01041000;XM_005374910;XM_013521021 XP_005374967;XP_013376475 MODEL 39133310 snorna SNORA62 Small nucleolar RNA SNORA62/SNORA6 family 8794239 ncrna LOC102018796 uncharacterized LOC102018796 NW_004955405 8543243 8547181 - 102018796 AGCD01004747;GBDF01238909;XR_259364 MODEL 8790270 ncrna LOC102028615 uncharacterized LOC102028615 NW_004955407 33951826 33955579 + 102028615 AGCD01007715;GBDF01278692;XR_001231182;XR_259604 MODEL 8791056 protein-coding Pbk PDZ binding kinase ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to UV (ortholog); negative regulation of inflammatory response (ortholog); negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); polycystic ovary syndrome (ortholog); FOUND IN nucleus (ortholog) NW_004955403 50332167 50353147 - 102009245 AGCD01002965;AGCD01002966;GBDF01050265;XM_005373758;XM_013514298;XM_013514300;XM_013514306 XP_005373815;XP_013369752;XP_013369754;XP_013369760 MODEL 8733024 protein-coding LOC102011570 olfactory receptor 10AG1-like NW_004955511 924080 925039 - 102011570 AGCD01066346;XM_005408218 XP_005408275 MODEL 8812503 protein-coding Pphln1 periphilin 1 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN constitutive heterochromatin formation (ortholog); negative regulation of gene expression, epigenetic (ortholog); negative regulation of type I interferon production (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955500 1744968 1892056 + 102003041 AGCD01063681;AGCD01063682;AGCD01063683;AGCD01063684;AGCD01063685;AGCD01063686;AGCD01063687;AGCD01063688;GBBH01140452;GBDF01047222;XM_013505665;XM_013505666;XM_013505667;XM_013505668;XM_013505670;XM_013505671 XP_013361119;XP_013361120;XP_013361121;XP_013361122;XP_013361124;XP_013361125 MODEL 8779702 ncrna LOC102025914 uncharacterized LOC102025914 NW_004955490 514897 522805 - 102025914 AGCD01060066;AGCD01060067;GBDJ01095169;XR_001231208;XR_264027 MODEL 8772304 protein-coding Prr29 proline rich 29 NW_004955478 7851993 7857147 - 102016705 AGCD01055998;GBBH01063008;XM_013503227;XM_013503228 XP_013358681;XP_013358682 MODEL 8995918 ncrna LOC102017644 uncharacterized LOC102017644 NW_004955412 23698957 23719026 - 102017644 AGCD01013092;GBDF01274071;XR_001232911;XR_001232912;XR_001232913;XR_001232914;XR_001232915 MODEL 9006577 ncrna LOC102024478 uncharacterized LOC102024478 NW_004955502 1117433 1121988 + 102024478 AGCD01064258;GBDF01193812;XR_001231533 MODEL 9020423 protein-coding Rexo5 RNA exonuclease 5 FOUND IN nucleolus (ortholog) NW_004955493 103588 144412 + 102028764 AGCD01060838;AGCD01060839;GBDK01195535;XM_005405029;XM_005405030;XM_005405032;XM_005405033 XP_005405086;XP_005405087;XP_005405089;XP_005405090 MODEL 8872178 pseudo LOC102012748 mothers against decapentaplegic homolog 5 pseudogene NW_004955412 6157467 6159343 + 102012748 AGCD01012666 MODEL 39133325 snrna U4 U4 spliceosomal RNA 9042324 protein-coding Tp53inp1 tumor protein p53 inducible nuclear protein 1 ENCODES a protein that exhibits antioxidant activity (ortholog); INVOLVED IN autophagic cell death (ortholog); cellular response to ethanol (ortholog); cellular response to hydroperoxide (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome 1 (ortholog); FOUND IN autophagosome (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955417 11063217 11079389 - 102030306 AGCD01018119;GBBH01088065;GBDI01139432;XM_005381823 XP_005381880 MODEL 8957169 protein-coding LOC102008496 glutathione S-transferase theta-1 NW_004955455 8324748 8336051 - 102008496 AGCD01045886;AGCD01045887;GBDI01296088;XM_005396409 XP_005396466 MODEL 8889500 protein-coding Pdhb pyruvate dehydrogenase E1 subunit beta ENCODES a protein that exhibits pyruvate dehydrogenase (acetyl-transferring) activity (ortholog); INVOLVED IN pyruvate decarboxylation to acetyl-CoA (ortholog); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; Leigh disease pathway; ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); pyruvate decarboxylase deficiency (ortholog); FOUND IN mitochondrion (ortholog); pyruvate dehydrogenase complex (ortholog) NW_004955430 1707615 1713541 + 102007796 AGCD01029132;GBBH01115754;XM_013515650 XP_013371104 MODEL 8869176 ncrna LOC102026274 uncharacterized LOC102026274 NW_004955402 47654802 47680391 + 102026274 AGCD01001192;GBDJ01001761;XR_259097 MODEL 8941091 ncrna LOC102023474 uncharacterized LOC102023474 NW_004955419 3480398 3524480 - 102023474 AGCD01019725;AGCD01019726;GBDK01002749;XR_001233578 MODEL 9057699 protein-coding Riok3 RIO kinase 3 ENCODES a protein that exhibits caspase binding (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to dsDNA (ortholog); cellular response to dsRNA (ortholog); cellular response to virus (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosolic ribosome (ortholog); preribosome, small subunit precursor (ortholog) NW_004955402 11649160 11670010 + 102005650 AGCD01000304;GBDF01008682;XM_005372704 XP_005372761 MODEL 9048933 protein-coding Pstpip2 proline-serine-threonine phosphatase interacting protein 2 ASSOCIATED WITH chronic recurrent multifocal osteomyelitis (ortholog); SAPHO syndrome (ortholog); FOUND IN cytoskeleton (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955402 31538335 31637901 - 102027028 AGCD01000790;AGCD01000791;AGCD01000792;AGCD01000793;AGCD01000794;AGCD01000795;AGCD01000796;AGCD01000797;AGCD01000798;AGCD01000799;AGCD01000800;GBDJ01042045;XM_005372863;XM_013510408 XP_005372920;XP_013365862 MODEL 8911397 protein-coding LOC102015749 uncharacterized LOC102015749 NW_004955506 1936669 1939131 + 102015749 AGCD01065277;GBDF01087684;XM_013505960 XP_013361414 MODEL 39131567 protein-coding SERTM2 serine rich and transmembrane domain containing 2 8850610 protein-coding Lime1 Lck interacting transmembrane adaptor 1 ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); regulation of canonical NF-kappaB signal transduction (ortholog); regulation of MAP kinase activity (ortholog); ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog); FOUND IN B cell receptor complex (ortholog) NW_004955528 490319 492943 - 102006278 AGCD01069536;GBCQ01125791;XM_005409949;XM_005409950;XM_005409951;XM_013507446;XM_013507447;XM_013507448 XP_005410006;XP_005410007;XP_005410008;XP_013362900;XP_013362901;XP_013362902 MODEL 8736420 protein-coding Thsd7b thrombospondin type 1 domain containing 7B ASSOCIATED WITH Ehlers-Danlos syndrome classic type 1 (ortholog) NW_004955440 4054497 4834962 + 102012029 AGCD01036255;AGCD01036256;AGCD01036257;AGCD01036258;AGCD01036259;AGCD01036260;AGCD01036261;AGCD01036262;AGCD01036263;AGCD01036264;AGCD01036265;AGCD01036266;AGCD01036267;AGCD01036268;AGCD01036269;GBBH01217705;XM_013517433 XP_013372887 MODEL 9051895 protein-coding Pycr2 pyrroline-5-carboxylate reductase 2 ENCODES a protein that exhibits pyrroline-5-carboxylate reductase activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); L-proline biosynthetic process (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); genetic disease (ortholog); hypomyelinating leukodystrophy 10 (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955489 138600 143112 - 102008736 AGCD01059778;GBBH01031760;GBDJ01018987;XM_005404488 XP_005404545 MODEL 10337365 ncrna LOC106147101 uncharacterized LOC106147101 NW_004955518 3109911 3113667 - 106147101 AGCD01067793;GBDF01035276;XR_001231853 MODEL 8881008 pseudo LOC102030399 vomeronasal type-1 receptor 4-like NW_004955465 13038533 13039209 + 102030399 AGCD01050580 MODEL 8837437 pseudo LOC102007014 40S ribosomal protein S15a pseudogene NW_004955418 14137072 14137418 + 102007014 AGCD01019064 MODEL 8769859 protein-coding Prdm5 PR/SET domain 5 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); mitotic cell cycle (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Axenfeld-Rieger syndrome type 1 (ortholog); brittle cornea syndrome 1 (ortholog); brittle cornea syndrome 2 (ortholog); FOUND IN nuclear body (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955428 19684721 19881716 + 102019418 AGCD01028095;AGCD01028096;AGCD01028097;AGCD01028098;GBCQ01020388;XM_013515254 XP_013370708 MODEL 8732777 protein-coding Pbld phenazine biosynthesis like protein domain containing ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); apoptotic process (ortholog); maintenance of gastrointestinal epithelium (ortholog); ASSOCIATED WITH pre-malignant neoplasm (ortholog); FOUND IN cytoplasm (ortholog) NW_004955425 20564296 20620988 - 102005488 AGCD01025741;AGCD01025742;AGCD01025743;AGCD01025744;AGCD01025745;AGCD01025746;AGCD01025747;AGCD01025748;AGCD01025749;AGCD01025750;AGCD01025751;GBDF01221674;XM_005385984;XM_005385985;XM_005385986;XM_005385987;XM_005385988;XM_005385991;XM_013514827;XM_013514828;XM_013514829;XM_013514830 XP_005386041;XP_005386042;XP_005386043;XP_005386044;XP_005386045;XP_005386048;XP_013370281;XP_013370282;XP_013370283;XP_013370284 MODEL 8803964 protein-coding Slc16a14 solute carrier family 16 member 14 NW_004955453 5011638 5044259 + 102029585 AGCD01044702;AGCD01044703;AGCD01044704;GBCE01147531;GBDJ01095780;XM_005395421 XP_005395478 MODEL 8877326 protein-coding Runx3 RUNX family transcription factor 3 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN axon guidance (ortholog); cell maturation (ortholog); chondrocyte differentiation (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); adenocarcinoma (ortholog); ankylosing spondylitis (ortholog); FOUND IN chromatin (ortholog); core-binding factor complex (ortholog); cytoplasm (ortholog) NW_004955452 4580444 4606820 - 102015800 AGCD01043986;GBDI01170141;GBDI01227289;XM_013519718 XP_013375172 MODEL 8983867 pseudo LOC102009624 nuclear receptor-binding factor 2 pseudogene NW_004955495 3092379 3093300 + 102009624 AGCD01061822 MODEL 8871221 pseudo LOC102010370 tax1-binding protein 1 homolog NW_004955418 30088883 30095400 + 102010370 AGCD01019503 MODEL 8843304 protein-coding Trim55 tripartite motif containing 55 ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN diapedesis (ortholog); macrophage migration (ortholog); positive regulation of non-canonical NF-kappaB signal transduction (ortholog) NW_004955444 12992362 13034621 - 102018137 AGCD01039088;GBCB01022555;XM_005392155;XM_005392156;XM_005392157;XM_005392158 XP_005392212;XP_005392213;XP_005392214;XP_005392215 MODEL 8777477 ncrna LOC102005544 uncharacterized LOC102005544 NW_004955403 19218644 19229973 + 102005544 AGCD01002120;GBDF01056356;XR_001233395 MODEL 9011464 protein-coding Snx10 sorting nexin 10 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); ATPase binding (ortholog); INVOLVED IN bone mineralization involved in bone maturation (ortholog); bone remodeling (ortholog); bone resorption (ortholog); ASSOCIATED WITH autosomal recessive osteopetrosis 8 (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN apical cytoplasm (ortholog); centrosome (ortholog); cytosol (ortholog) NW_004955410 28137426 28178814 + 102025219 AGCD01011242;AGCD01011243;AGCD01011244;GBBH01006766;GBCQ01123481;XM_013510607 XP_013366061 MODEL 8834591 protein-coding Slc5a5 solute carrier family 5 member 5 ENCODES a protein that exhibits iodide transmembrane transporter activity (ortholog); monoatomic anion:sodium symporter activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to forskolin (ortholog); cellular response to gonadotropin stimulus (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH amenorrhea (ortholog); Breast Neoplasms (ortholog); cholangiocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955524 3372539 3380758 - 102012470 AGCD01068890;AGCD01068891;GBDI01013617;GBDI01016743;XM_013507280 XP_013362734 MODEL 8877199 protein-coding Smco1 single-pass membrane protein with coiled-coil domains 1 NW_004955420 12680494 12685018 - 102012968 AGCD01020884;GBCB01022329;XM_005383135 XP_005383192 MODEL 8848687 pseudo LOC102028970 1-acyl-sn-glycerol-3-phosphate acyltransferase alpha pseudogene NW_004955484 2789953 2792780 - 102028970 AGCD01058133;AGCD01058134 MODEL 8712001 protein-coding Emp3 epithelial membrane protein 3 (MAM blood group) INVOLVED IN apoptotic process (ortholog); bleb assembly (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955559 2117200 2121366 - 102012480 AGCD01073691;GBDJ01005369;XM_005412959;XM_013509045 XP_005413016;XP_013364499 MODEL 9048912 ncrna LOC102023482 uncharacterized LOC102023482 NW_004955421 1031449 1034746 - 102023482 AGCD01021587;GBBH01057690;XR_260783 MODEL 8826739 ncrna LOC102019243 uncharacterized LOC102019243 NW_004955406 11927100 11938294 + 102019243 AGCD01005898;XR_001236357 MODEL 8860480 pseudo LOC102028617 ribosomal RNA small subunit methyltransferase NEP1 pseudogene NW_004955408 30032361 30036479 + 102028617 AGCD01008792 MODEL 10194901 protein-coding LOC106148200 uncharacterized LOC106148200 NW_004955417 26373147 26392926 + 106148200 AGCD01018507;GBDK01170249;XM_013512736 XP_013368190 MODEL 8795535 pseudo LOC102010778 60S ribosomal protein L12-like NW_004955459 3652052 3652565 + 102010778 AGCD01048015 MODEL 10319509 protein-coding LOC106149944 UPF0317 protein KRH_21160-like NW_004955458 9381874 9396866 + 106149944 AGCD01047640;GBCE01061454;XM_013520806 XP_013376260 MODEL 8864150 pseudo LOC102017645 cyclin-G1 pseudogene NW_004955466 9212833 9213709 + 102017645 AGCD01051031 MODEL 8732373 protein-coding Limk1 LIM domain kinase 1 ENCODES a protein that exhibits heat shock protein binding (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN positive regulation of actin filament bundle assembly (ortholog); positive regulation of axon extension (ortholog); positive regulation of stress fiber assembly (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH High Myopia (ortholog); myoclonic-atonic epilepsy (ortholog); Williams-Beuren syndrome (ortholog); FOUND IN axonal growth cone (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955456 13751135 13773722 - 102020206 AGCD01046617;AGCD01046618;GBCB01130874;GBCE01065465;XM_013520581 XP_013376035 MODEL 9037256 protein-coding Rad51 RAD51 recombinase ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); chromatin binding (ortholog); INVOLVED IN cellular response to alkaloid (ortholog); cellular response to camptothecin (ortholog); cellular response to cisplatin (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); Breast Neoplasms (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); chromosome, telomeric region (ortholog) NW_004955416 7566715 7590628 + 102024794 AGCD01016991;AGCD01016992;AGCD01016993;AGCD01016994;GBDF01087352;XM_005381253 XP_005381310 MODEL 8972996 protein-coding Bsn bassoon presynaptic cytomatrix protein ENCODES a protein that exhibits dynein light chain binding (ortholog); enzyme inhibitor activity (ortholog); structural constituent of presynaptic active zone (ortholog); INVOLVED IN axo-dendritic transport (ortholog); modulation of chemical synaptic transmission (ortholog); presynaptic active zone assembly (ortholog); ASSOCIATED WITH epilepsy (ortholog); heart disease (ortholog); FOUND IN axon (ortholog); axon cytoplasm (ortholog); cell cortex (ortholog) NW_004955532 1527336 1578394 + 102008256 AGCD01070191;AGCD01070192;AGCD01070193;AGCD01070194;GBDF01249114;XM_013507574 XP_013363028 MODEL 8797513 ncrna LOC102006617 uncharacterized LOC102006617 NW_004955554 279370 284309 - 102006617 AGCD01072943;XR_264944 MODEL 10185737 ncrna LOC106147102 uncharacterized LOC106147102 NW_004955518 1834469 1841480 + 106147102 AGCD01067766;XR_001231854;XR_001231855 MODEL 9035198 protein-coding Pycr3 pyrroline-5-carboxylate reductase 3 ENCODES a protein that exhibits identical protein binding (ortholog); pyrroline-5-carboxylate reductase activity (ortholog); INVOLVED IN L-proline biosynthetic process (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955454 2305485 2311280 - 102007405 AGCD01045015;GBCB01101013;XM_005395787 XP_005395844 MODEL 8840746 protein-coding Plcz1 phospholipase C zeta 1 ENCODES a protein that exhibits C-type glycerophospholipase activity (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN calcium ion transport (ortholog); egg activation (ortholog); positive regulation of cytosolic calcium ion concentration (ortholog); ASSOCIATED WITH spermatogenic failure 17 (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); nucleolus (ortholog) NW_004955413 14791750 14846327 - 102011640 AGCD01014051;AGCD01014052;AGCD01014053;GBDF01083196;XM_005379040;XM_013511282;XR_001232940;XR_260080 XP_005379097;XP_013366736 MODEL 39132820 snorna SNORA63 Small nucleolar RNA SNORA63 8947909 protein-coding LOC102026279 band 4.1-like protein 2 NW_004955734 1673 28910 - 102026279 AGCD01078229;AGCD01078230;GBCB01043122;GBDK01074964;XM_005415084;XM_013510183;XM_013510184;XM_013510185 XP_005415141;XP_013365637;XP_013365638;XP_013365639 MODEL 8828379 protein-coding Pbrm1 polybromo 1 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN blastocyst formation (ortholog); heart development (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN altered SWI/SNF family mediated chromatin remodeling pathway; histone modification pathway; pancreatic cancer pathway; ASSOCIATED WITH cholangiocarcinoma (ortholog); clear cell renal cell carcinoma (ortholog); colorectal cancer (ortholog); FOUND IN kinetochore (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955430 2536086 2671094 - 102020362 AGCD01029168;AGCD01029169;AGCD01029170;AGCD01029171;GBCB01006733;GBDK01014485;XM_013515574;XM_013515575;XM_013515576;XM_013515577;XM_013515578;XM_013515579;XM_013515580;XM_013515582;XM_013515583;XM_013515584;XM_013515585;XM_013515586;XM_013515587 XP_013371028;XP_013371029;XP_013371030;XP_013371031;XP_013371032;XP_013371033;XP_013371034;XP_013371036;XP_013371037;XP_013371038;XP_013371039;XP_013371040;XP_013371041 MODEL 9011051 pseudo LOC102011574 polyadenylate-binding protein 1 pseudogene NW_004955516 4984024 4988135 + 102011574 AGCD01067543 MODEL 9042866 protein-coding LOC102003769 protein NipSnap homolog 3A-like NW_004955419 21692598 21700920 - 102003769 AGCD01020281;GBCB01039739;GBDK01115357;XM_013513175 XP_013368629 MODEL 8721420 protein-coding Sec14l3 SEC14 like lipid binding 3 NW_004955455 4681026 4692277 - 102021729 AGCD01045684;GBCE01005166;XM_005396263;XM_005396267 XP_005396320;XP_005396324 MODEL 8846079 protein-coding LOC102027959 olfactory receptor 6M1 NW_004955412 24524602 24525549 - 102027959 AGCD01013116;XM_005378401 XP_005378458 MODEL 8944602 protein-coding Ptafr platelet activating factor receptor ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); lipopolysaccharide immune receptor activity (ortholog); mitogen-activated protein kinase binding (ortholog); INVOLVED IN cellular response to 2-O-acetyl-1-O-hexadecyl-sn-glycero-3-phosphocholine (ortholog); cellular response to cAMP (ortholog); cellular response to fatty acid (ortholog); ASSOCIATED WITH Otitis Media with Effusion; Acute Experimental Pancreatitis (ortholog); acute kidney failure (ortholog); FOUND IN plasma membrane (ortholog) NW_004955452 7309854 7345579 - 102012825 AGCD01044144;AGCD01044145;GBCE01013423;XM_005394941;XM_013519732;XM_013519733 XP_005394998;XP_013375186;XP_013375187 MODEL 8799221 protein-coding Ppia peptidylprolyl isomerase A ENCODES a protein that exhibits cyclosporin A binding (ortholog); heparan sulfate binding (ortholog); integrin binding (ortholog); INVOLVED IN activation of protein kinase B activity (ortholog); apoptotic process (ortholog); cell adhesion molecule production (ortholog); ASSOCIATED WITH aggressive periodontitis (ortholog); atopic dermatitis (ortholog); Bell's palsy (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); nucleus (ortholog) NW_004955456 7381923 7383203 - 102016448 AGCD01046413;GBBH01002379;GBCQ01008235;XM_005396653 XP_005396710 MODEL 8912303 pseudo LOC102024482 lymphoid-restricted membrane protein-like NW_004955504 5887375 5889998 - 102024482 AGCD01064907;XM_005407090 MODEL 8965069 protein-coding Rbis ribosomal biogenesis factor INVOLVED IN ribosome biogenesis (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955417 3155852 3162925 - 102003236 AGCD01017905;GBCC01008391;XM_005381739 XP_005381796 MODEL 8970289 protein-coding Thtpa thiamine triphosphatase ENCODES a protein that exhibits magnesium ion binding (ortholog); thiamine triphosphate phosphatase activity (ortholog); INVOLVED IN dephosphorylation (ortholog); thiamine diphosphate biosynthetic process (ortholog); thiamine diphosphate metabolic process (ortholog); PARTICIPATES IN thiamine metabolic pathway; FOUND IN cytosol (ortholog) NW_004955409 36803721 36808094 - 102016453 AGCD01010481;AGCD01010482;GBBH01188134;XM_005377061;XM_013510425;XM_013510426;XM_013510427 XP_005377118;XP_013365879;XP_013365880;XP_013365881 MODEL 39133326 snrna U4 U4 spliceosomal RNA 9054803 protein-coding Rfc1 replication factor C subunit 1 ENCODES a protein that exhibits DNA clamp unloader activity (ortholog); DNA-binding transcription factor binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN DNA-templated DNA replication (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN FasL mediated signaling pathway; mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH Bilateral Vestibulopathy (ortholog); cerebellar ataxia (ortholog); cerebellar ataxia, neuropathy, and vestibular areflexia syndrome (ortholog); FOUND IN DNA replication factor C complex (ortholog); Elg1 RFC-like complex (ortholog); nucleoplasm (ortholog) NW_004955443 7969117 8051734 + 102004016 AGCD01038305;AGCD01038306;AGCD01038307;AGCD01038308;GBBH01228492;GBDF01085359;XM_013518069;XM_013518070 XP_013373523;XP_013373524 MODEL 8960870 protein-coding LOC102021740 olfactory receptor 49-like NW_004955409 37585637 37645425 - 102021740 AGCD01010530;AGCD01010531;AGCD01010532;AGCD01010533;XM_005377184 XP_005377241 MODEL 8853582 protein-coding Pdhx pyruvate dehydrogenase complex component X ENCODES a protein that exhibits dihydrolipoyllysine-residue acetyltransferase activity (ortholog); INVOLVED IN pyruvate decarboxylation to acetyl-CoA (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); mitochondrial metabolism disease (ortholog); FOUND IN mitochondrion (ortholog); pyruvate dehydrogenase complex (ortholog) NW_004955422 11335766 11405565 - 102013304 AGCD01022754;AGCD01022755;GBCB01022296;XM_005384137;XM_013514244 XP_005384194;XP_013369698 MODEL 8754799 protein-coding Rusc1 RUN and SH3 domain containing 1 ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN protein polyubiquitination (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955545 1765364 1773889 + 102006825 AGCD01071869;GBDK01118008;XM_013508229;XM_013508230;XM_013508231;XM_013508232;XM_013508233 XP_013363683;XP_013363684;XP_013363685;XP_013363686;XP_013363687 MODEL 8933341 pseudo LOC102018802 UMP-CMP kinase pseudogene NW_004955407 36136514 36150095 + 102018802 AGCD01007758;AGCD01007759 MODEL 8737857 pseudo LOC102028977 ferritin light chain pseudogene NW_004955490 9017337 9017850 + 102028977 AGCD01060301 MODEL 8944716 protein-coding Prr3 proline rich 3 NW_004955583 580630 584418 + 102015677 AGCD01075840;GBBH01187837;GBCQ01153159;XM_013509795;XR_001232500 XP_013365249 MODEL 8794011 ncrna LOC102011575 uncharacterized LOC102011575 NW_004955433 7112388 7165573 + 102011575 AGCD01031565;AGCD01031566;GBDF01115735;XR_001234705;XR_261564 MODEL 8725901 protein-coding Smco3 single-pass membrane protein with coiled-coil domains 3 NW_004955413 11551720 11560566 - 102029383 AGCD01013964;GBCQ01006581;XM_005379006;XM_005379007;XM_005379010;XM_013511646;XM_013511647;XM_013511648;XM_013511649 XP_005379063;XP_005379064;XP_005379067;XP_013367100;XP_013367101;XP_013367102;XP_013367103 MODEL 8999491 protein-coding LOC102010781 proline-rich proteoglycan 2-like NW_004955463 13403383 13407571 + 102010781 AGCD01049866;GBDI01274687;XM_005398474 XP_005398531 MODEL 8746347 protein-coding Emsy EMSY transcriptional repressor, BRCA2 interacting ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH allergic rhinitis (ortholog); asthma (ortholog); atopic dermatitis (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955414 15395851 15482490 - 102015398 AGCD01015184;AGCD01015185;AGCD01015186;GBDK01013488;XM_005379854;XM_005379859;XM_005379860;XM_005379861;XM_005379865;XM_013511858;XM_013511859;XM_013511860;XM_013511861;XM_013511862;XM_013511863;XM_013511864;XM_013511865;XM_013511866;XM_013511867;XM_013511868;XM_013511869;XM_013511870;XM_013511871;XR_001233129;XR_001233130 XP_005379911;XP_005379916;XP_005379917;XP_005379918;XP_005379922;XP_013367312;XP_013367313;XP_013367314;XP_013367315;XP_013367316;XP_013367317;XP_013367318;XP_013367319;XP_013367320;XP_013367321;XP_013367322;XP_013367323;XP_013367324;XP_013367325 MODEL 8813919 protein-coding Sec14l4 SEC14 like lipid binding 4 NW_004955455 4716470 4742277 - 102023112 AGCD01045687;AGCD01045688;GBDK01002305;XM_005396269;XM_013520472;XM_013520473;XM_013520474 XP_005396326;XP_013375926;XP_013375927;XP_013375928 MODEL 10302046 protein-coding LOC106149945 coiled-coil domain-containing protein 86-like NW_004955458 10689606 10703839 + 106149945 AGCD01047701;GBCQ01086243;XM_013520807 XP_013376261 MODEL 8838137 ncrna LOC102011155 uncharacterized LOC102011155 NW_004955446 10576607 10593188 + 102011155 AGCD01040183;GBDF01235922;XR_262391 MODEL 8964667 protein-coding Prdm8 PR/SET domain 8 ENCODES a protein that exhibits chromatin binding (ortholog); histone H3K9 methyltransferase activity (ortholog); histone methyltransferase activity (ortholog); INVOLVED IN central nervous system projection neuron axonogenesis (ortholog); corpus callosum morphogenesis (ortholog); corticospinal tract morphogenesis (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH COVID-19 (ortholog); progressive myoclonus epilepsy (ortholog); progressive myoclonus epilepsy 10 (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955433 4443339 4463687 + 102007461 AGCD01031464;AGCD01031465;AGCD01031466;AGCD01031467;AGCD01031468;GBBH01191689;XM_005388496 XP_005388553 MODEL 8905772 protein-coding Riox1 ribosomal oxygenase 1 ENCODES a protein that exhibits 2-oxoglutarate-dependent dioxygenase activity (ortholog); histone H3K36 demethylase activity (ortholog); histone H3K4me/H3K4me2/H3K4me3 demethylase activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of osteoblast differentiation (ortholog); regulation of DNA repair (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955523 1907570 1910038 - 102009980 AGCD01068549;AGCD01068550;GBBH01126419;XM_013507126 XP_013362580 MODEL 9014004 pseudo LOC102009626 U6 snRNA-associated Sm-like protein LSm6 pseudogene NW_004955423 13610988 13611230 + 102009626 AGCD01023749 MODEL 9012979 protein-coding LOC102027268 chromosome unknown open reading frame, human C1orf116 FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955406 42537925 42573168 - 102027268 AGCD01006712;GBDK01009102;XM_005375420;XM_005375421;XM_005375422;XM_013502804;XM_013502806;XM_013502812;XM_013502818 XP_005375477;XP_005375478;XP_005375479;XP_013358258;XP_013358260;XP_013358266;XP_013358272 MODEL 8736878 protein-coding LOC102015752 olfactory receptor 8H1-like NW_004955511 1182402 1183361 + 102015752 AGCD01066359;XM_005408226 XP_005408283 MODEL 8714139 protein-coding LOC102017650 Fc receptor-like protein 3 NW_004955468 9539939 9611259 - 102017650 AGCD01052049;AGCD01052050;GBDI01278495;XM_005400124;XM_005400128;XM_013522495;XM_013522496;XM_013522497 XP_005400181;XP_005400185;XP_013377949;XP_013377950;XP_013377951 MODEL 8707158 ncrna LOC102006623 uncharacterized LOC102006623 NW_004955563 2035807 2036366 + 102006623 AGCD01074168;GBDF01050491;XR_265019 MODEL 8996837 protein-coding LOC102025919 taste receptor type 2 member 39-like NW_004955494 454992 455991 - 102025919 AGCD01061378;XM_013504915 XP_013360369 MODEL 8891322 protein-coding Snx11 sorting nexin 11 ENCODES a protein that exhibits phosphatidylinositol phosphate binding (ortholog); INVOLVED IN vesicle organization (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); plasma membrane (ortholog) NW_004955451 13051649 13060479 - 102008910 AGCD01043444;GBCE01136669;XM_005394248;XM_013519425;XM_013519426;XM_013519427 XP_005394305;XP_013374879;XP_013374880;XP_013374881 MODEL 8859869 protein-coding Trim56 tripartite motif containing 56 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN defense response to virus (ortholog); host-mediated suppression of symbiont invasion (ortholog); innate immune response (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955456 16181890 16185598 - 102028268 AGCD01046693;GBBH01228287;XM_005396871;XM_013520643 XP_005396928;XP_013376097 MODEL 8725229 protein-coding Slc5a7 solute carrier family 5 member 7 ENCODES a protein that exhibits choline binding (ortholog); choline transmembrane transporter activity (ortholog); choline:sodium symporter activity (ortholog); INVOLVED IN acetylcholine biosynthetic process (ortholog); choline transport (ortholog); in utero embryonic development (ortholog); PARTICIPATES IN acetylcholine signaling pathway via muscarinic acetylcholine receptor; acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH asthma (ortholog); autosomal dominant distal hereditary motor neuronopathy 7 (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); clathrin-coated endocytic vesicle (ortholog) NW_004955470 11673491 11694404 + 102006334 AGCD01052897;GBBH01014798;XM_005400796 XP_005400853 MODEL 9046128 protein-coding Sesn1 sestrin 1 ENCODES a protein that exhibits L-leucine binding (ortholog); INVOLVED IN cellular oxidant detoxification (ortholog); cellular response to amino acid starvation (ortholog); cellular response to amino acid stimulus (ortholog); FOUND IN cytoplasm (ortholog); fibrillar center (ortholog); GATOR2 complex (ortholog) NW_004955411 34033986 34051171 - 102015489 AGCD01012378;AGCD01012379;GBCB01023930;GBDF01121431;XM_013510807 XP_013366261 MODEL 39132817 snorna SNORA63 Small nucleolar RNA SNORA63 8865702 ncrna LOC102012752 uncharacterized LOC102012752 NW_004955469 10486414 10491430 - 102012752 AGCD01052535;GBCE01044034;XR_263446 MODEL 8920972 protein-coding LOC102015754 spermatogenesis-associated protein 31E1-like NW_004955515 2468254 2473814 - 102015754 AGCD01067250;GBDF01046133;XM_005408874 XP_005408931 MODEL 8890102 ncrna LOC102023487 uncharacterized LOC102023487 NW_004955493 6918924 6924538 + 102023487 AGCD01061147;AGCD01061148;GBDI01319978;XR_001231270 MODEL 8891103 ncrna LOC102028619 uncharacterized LOC102028619 NW_004955459 14398875 14418943 + 102028619 AGCD01048299;GBDF01248575;XR_263018 MODEL 8712486 ncrna LOC102030405 uncharacterized LOC102030405 NW_004955413 20449750 20450775 + 102030405 AGCD01014216;GBDF01209169;XR_260089 MODEL 9003323 protein-coding Tp53inp2 tumor protein p53 inducible nuclear protein 2 INVOLVED IN autophagosome assembly (ortholog); positive regulation of DNA-templated transcription (ortholog); FOUND IN autophagosome (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955422 26640239 26649291 - 102021252 AGCD01023294;GBDK01146060;XM_005384824;XM_005384825;XM_005384826;XM_013514089 XP_005384881;XP_005384882;XP_005384883;XP_013369543 MODEL 9043453 protein-coding Wdr20 WD repeat domain 20 ENCODES a protein that exhibits deubiquitinase activator activity (ortholog); INVOLVED IN positive regulation of canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); papillary thyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); peptidase complex (ortholog) NW_004955538 1520336 1590824 + 102026907 AGCD01071069;AGCD01071070;AGCD01071071;AGCD01071072;AGCD01071073;AGCD01071074;GBDF01083282;XM_005410738;XM_005410739;XM_005410740;XM_005410743;XM_005410746;XM_005410747;XM_005410748;XM_013507829;XM_013507830;XM_013507831 XP_005410795;XP_005410796;XP_005410797;XP_005410800;XP_005410803;XP_005410804;XP_005410805;XP_013363283;XP_013363284;XP_013363285 MODEL 8720435 ncrna LOC102010374 uncharacterized LOC102010374 NW_004955487 1473174 1486730 + 102010374 AGCD01059246;GBDF01209774;XR_263982 MODEL 8934957 protein-coding LOC102024487 melanoma-associated antigen B5-like NW_004955509 6427045 6430028 + 102024487 AGCD01066122;GBDF01213466;XM_013506290 XP_013361744 MODEL 8858183 protein-coding Slc16a2 solute carrier family 16 member 2 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); identical protein binding (ortholog); thyroid hormone transmembrane transporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); amino acid metabolic process (ortholog); hormone transport (ortholog); ASSOCIATED WITH Allan-Herndon-Dudley syndrome (ortholog); autism spectrum disorder (ortholog); cholestasis (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog) NW_004955562 305850 455764 + 102023963 AGCD01073921;AGCD01073922;AGCD01073923;AGCD01073924;AGCD01073925;GBDK01218930;XM_005413081 XP_005413138 MODEL 8753248 protein-coding Thumpd1 THUMP domain 1 NAT10 acetyltransferase adaptor ASSOCIATED WITH NEURODEVELOPMENTAL DISORDER WITH SPEECH DELAY AND VARIABLE OCULAR ANOMALIES (ortholog) NW_004955493 32326 40283 - 102027865 AGCD01060835;GBCE01097709;XM_005405026 XP_005405083 MODEL 8875310 protein-coding Rad51ap1 RAD51 associated protein 1 ENCODES a protein that exhibits D-loop DNA binding (ortholog); DNA binding (ortholog); DNA secondary structure binding (ortholog); INVOLVED IN cellular response to ionizing radiation (ortholog); DNA damage response (ortholog); DNA recombination (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); nucleus (ortholog) NW_004955413 2335431 2362781 + 102004153 AGCD01013544;XM_005378737;XM_013511568 XP_005378794;XP_013367022 MODEL 8754107 protein-coding Pygb glycogen phosphorylase B ENCODES a protein that exhibits 1,4-alpha-oligoglucan phosphorylase activity (ortholog); carbohydrate binding (ortholog); glycogen phosphorylase activity (ortholog); INVOLVED IN glycogen catabolic process (ortholog); glycogen metabolic process (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Dwarfism (ortholog); Myocardial Ischemia (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog) NW_004955415 31254240 31283651 + 102011761 AGCD01016672;GBBH01062054;XM_005380992 XP_005381049 MODEL 8930496 protein-coding LOC102005547 breast cancer type 1 susceptibility protein homolog NW_004956027 800 5983 - 102005547 AGCD01078904;GBBH01191619;GBCQ01157973;XM_005415162 XP_005415219 MODEL 8822158 protein-coding Bsnd barttin CLCNK type accessory subunit beta ENCODES a protein that exhibits chloride channel activity (ortholog); chloride channel regulator activity (ortholog); INVOLVED IN chloride transport (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); Bartter disease (ortholog); Bartter disease type 4A (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955464 4459686 4468749 - 102023448 AGCD01049991;GBCQ01002696;XM_013521764 XP_013377218 MODEL 8865990 ncrna LOC102021742 uncharacterized LOC102021742 NW_004955410 19646329 19650590 + 102021742 AGCD01011025;AGCD01011026;GBDF01304716;XR_001232689;XR_001232690;XR_001232691;XR_001232692 MODEL 8921146 protein-coding Pld1 phospholipase D1 ENCODES a protein that exhibits D-type glycerophospholipase activity (ortholog); INVOLVED IN cellular response to nutrient (ortholog); defense response to Gram-positive bacterium (ortholog); phosphatidic acid biosynthetic process (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); developmental cardiac valvular defect (ortholog); Experimental Seizures (ortholog); FOUND IN apical plasma membrane (ortholog); cholinergic synapse (ortholog); endocytic vesicle (ortholog) NW_004955420 1697716 1892741 - 102026748 AGCD01020576;AGCD01020577;AGCD01020578;AGCD01020579;AGCD01020580;AGCD01020581;AGCD01020582;GBDI01326771;XM_005382998;XM_005382999;XM_005383000;XM_005383002;XM_013513558;XM_013513559;XM_013513560;XM_013513561 XP_005383055;XP_005383056;XP_005383057;XP_005383059;XP_013369012;XP_013369013;XP_013369014;XP_013369015 MODEL 8730047 protein-coding Pdia2 protein disulfide isomerase family A member 2 ENCODES a protein that exhibits protein-disulfide reductase activity (ortholog); INVOLVED IN platelet aggregation (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway NW_004955442 16898563 16901867 - 102003700 AGCD01037921;GBBH01055065;XM_005391660;XM_005391661 XP_005391717;XP_005391718 MODEL 8758181 protein-coding Rusc2 RUN and SH3 domain containing 2 ENCODES a protein that exhibits small GTPase binding (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 61 (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog) NW_004955472 698021 742966 - 102011981 AGCD01053351;AGCD01053352;AGCD01053353;AGCD01053354;GBBH01088464;GBDI01256209;XM_013522959 XP_013378413 MODEL 10166475 ncrna LOC106148201 uncharacterized LOC106148201 NW_004955417 26709450 26722741 + 106148201 AGCD01018514;GBDK01362805;XR_001233423 MODEL 8911885 protein-coding LOC102006625 ankyrin repeat domain-containing protein 26-like NW_004955582 71374 168669 + 102006625 AGCD01075741;AGCD01075742;AGCD01075743;AGCD01075744;AGCD01075745;AGCD01075746;AGCD01075747;GBDF01000111;XM_005414285 XP_005414342 MODEL 8803891 protein-coding LOC102026281 membrane primary amine oxidase NW_004955451 16644224 16649957 + 102026281 AGCD01043697;GBDI01004304;XM_005394487 XP_005394544 MODEL 8950547 protein-coding LOC102028983 olfactory receptor 4A47-like NW_004955422 96436 97353 + 102028983 AGCD01022393;XM_005384928 XP_005384985 MODEL 8731935 protein-coding LOC102027961 olfactory receptor 151-like NW_004955412 25111380 25112327 + 102027961 AGCD01013135;XM_005378647 XP_005378704 MODEL 8724600 protein-coding LOC102008498 interferon-induced GTP-binding protein Mx2-like NW_004955407 35275551 35296838 - 102008498 AGCD01007736;GBBH01139527;XM_005375727;XM_013504510 XP_005375784;XP_013359964 MODEL 8849915 ncrna LOC102011577 uncharacterized LOC102011577 NW_004955521 1595235 1596832 - 102011577 AGCD01068190;GBDF01280804;XR_264603 MODEL 8883518 protein-coding Trim58 tripartite motif containing 58 ENCODES a protein that exhibits dynein heavy chain binding (ortholog); dynein intermediate chain binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN positive regulation of erythrocyte enucleation (ortholog); protein autoubiquitination (ortholog); protein polyubiquitination (ortholog) NW_004955613 229567 243019 + 102027367 AGCD01077204;AGCD01077205;GBBH01172756;GBBH01172759;XM_013510135;XM_013510136 XP_013365589;XP_013365590 MODEL 39133328 snrna U4 U4 spliceosomal RNA 8849954 protein-coding Sesn2 sestrin 2 ENCODES a protein that exhibits GDP-dissociation inhibitor activity (ortholog); L-leucine binding (ortholog); peroxidase activity (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); cellular oxidant detoxification (ortholog); cellular response to amino acid starvation (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Colorectal Neoplasms (ortholog); Hepatomegaly (ortholog); FOUND IN Atg1/ULK1 kinase complex (ortholog); cytoplasm (ortholog); GATOR2 complex (ortholog) NW_004955452 7392644 7417204 + 102014203 AGCD01044151;AGCD01044152;AGCD01044153;AGCD01044154;GBBH01131789;GBDF01160814;XM_005394946 XP_005395003 MODEL 8778085 protein-coding Sec14l5 SEC14 like lipid binding 5 NW_004955442 12527999 12567626 - 102028687 AGCD01037738;AGCD01037739;AGCD01037740;GBCB01075777;XM_005391257 XP_005391314 MODEL 8713802 protein-coding Prdx1 peroxiredoxin 1 ENCODES a protein that exhibits heme binding (ortholog); identical protein binding (ortholog); peroxidase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); erythrocyte homeostasis (ortholog); hydrogen peroxide catabolic process (ortholog); ASSOCIATED WITH asbestosis (ortholog); COVID-19 (ortholog); Esophageal Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); euchromatin (ortholog); mitochondrial matrix (ortholog) NW_004955464 12761390 12773413 + 102004364 AGCD01050224;AGCD01050225;AGCD01050226;AGCD01050227;AGCD01050228;GBCC01001560;GBCE01002844;XM_013521663 XP_013377117 MODEL 8812664 protein-coding LOC102009630 U8 snoRNA-decapping enzyme-like NW_004955501 7101160 7103076 - 102009630 AGCD01064204;GBDF01154480;XM_005406843 XP_005406900 MODEL 9001349 pseudo LOC102003773 60S ribosomal protein L27a pseudogene NW_004955491 6023903 6024578 + 102003773 AGCD01060512 MODEL 9020620 protein-coding Pbx1 PBX homeobox 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN adrenal gland development (ortholog); animal organ morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); brain infarction (ortholog); Burkitt lymphoma (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955462 11777168 12083068 - 102006551 AGCD01049394;AGCD01049395;AGCD01049396;AGCD01049397;GBDK01178003;XM_005398250;XM_005398252;XM_005398253;XM_005398254;XM_013521403 XP_005398307;XP_005398309;XP_005398310;XP_005398311;XP_013376857 MODEL 8964947 pseudo LOC102018807 BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 pseudogene NW_004955408 8524447 8526888 - 102018807 AGCD01008220 MODEL 8915468 protein-coding Riox2 ribosomal oxygenase 2 ENCODES a protein that exhibits identical protein binding (ortholog); peptidyl-histidine dioxygenase activity (ortholog); transcription corepressor activity (ortholog); ASSOCIATED WITH Lung Neoplasms (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955407 173590 203401 + 102011277 AGCD01006731;AGCD01006732;AGCD01006733;GBCQ01154799;XM_005375492;XM_005375494 XP_005375549;XP_005375551 MODEL 8926075 protein-coding LOC102005548 cytochrome P450 2D6-like NW_004957079 5 1733 + 102005548 AGCD01080475;GBDI01036375;XM_013510243 XP_013365697 MODEL 9059698 protein-coding Snx12 sorting nexin 12 ENCODES a protein that exhibits enzyme binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN negative regulation of early endosome to late endosome transport (ortholog); negative regulation of gene expression (ortholog); negative regulation of protein catabolic process (ortholog); FOUND IN early endosome (ortholog) NW_004955475 10632938 10641452 - 102027521 AGCD01055105;GBCE01118453;XM_005401637 XP_005401694 MODEL 8765419 protein-coding Ptar1 protein prenyltransferase alpha subunit repeat containing 1 FOUND IN mitochondrion (ortholog) NW_004955434 3309819 3356746 + 102003056 AGCD01032132;GBCQ01141133;XM_005388558 XP_005388615 MODEL 8791144 protein-coding LOC102012754 olfactory receptor 2D3-like NW_004955414 22588215 22589156 - 102012754 AGCD01015464;XM_005380509 XP_005380566 MODEL 8719672 pseudo LOC102030408 actin-like NW_004955413 12934722 12936356 - 102030408 AGCD01014004 MODEL 9029843 protein-coding Rbks ribokinase ENCODES a protein that exhibits identical protein binding (ortholog); ribokinase activity (ortholog); INVOLVED IN pentose-phosphate shunt (ortholog); PARTICIPATES IN pentose phosphate pathway; ribose 5-phosphate isomerase deficiency pathway; transaldolase deficiency pathway; FOUND IN cytoplasm (ortholog) NW_004955469 9734551 9831397 - 102010685 AGCD01052516;AGCD01052517;GBDF01085787;XM_005400521;XM_013522606;XM_013522607;XR_001236972 XP_005400578;XP_013378060;XP_013378061 MODEL 8774400 protein-coding Limk2 LIM domain kinase 2 ENCODES a protein that exhibits protein kinase activity (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN astral microtubule organization (ortholog); cornea development in camera-type eye (ortholog); establishment of vesicle localization (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN centrosome (ortholog); cis-Golgi network (ortholog); cytoplasm (ortholog) NW_004955455 5406085 5473418 + 102005894 AGCD01045726;AGCD01045727;GBCE01030826;XM_005396301;XM_005396302;XM_005396304;XM_005396305;XM_013520329 XP_005396358;XP_005396359;XP_005396361;XP_005396362;XP_013375783 MODEL 8900987 protein-coding Emx1 empty spiracles homeobox 1 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN brain development (ortholog); brain morphogenesis (ortholog); cerebral cortex development (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955424 12666280 12683023 - 102021025 AGCD01024617;GBCQ01035827;XM_005385579 XP_005385636 MODEL 9017093 protein-coding LOC102006633 keratin-associated protein 20-2-like NW_004955407 30151533 30151730 + 102006633 AGCD01007628;XM_005375639 XP_005375696 MODEL 8728534 protein-coding Rfc2 replication factor C subunit 2 ENCODES a protein that exhibits DNA clamp loader activity (ortholog); enzyme binding (ortholog); single-stranded DNA helicase activity (ortholog); INVOLVED IN DNA-templated DNA replication (ortholog); positive regulation of DNA-directed DNA polymerase activity (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; FOUND IN Ctf18 RFC-like complex (ortholog); DNA replication factor C complex (ortholog); nucleoplasm (ortholog) NW_004955456 13659122 13671405 + 102018895 AGCD01046609;AGCD01046610;GBDK01239240;XM_005396752;XM_013520619 XP_005396809;XP_013376073 MODEL 9038553 protein-coding LOC102019244 translation initiation factor IF-2-like NW_004955408 5772215 5775715 - 102019244 AGCD01008152;GBCB01043675;GBDF01074209;XM_013508552 XP_013364006 MODEL 8709564 protein-coding LOC102024488 olfactory receptor 1020-like NW_004955511 1747705 1751671 + 102024488 AGCD01066378;XM_005408242 XP_005408299 MODEL 8908862 pseudo LOC102007015 chromobox protein homolog 3 pseudogene NW_004955419 1378119 1378641 + 102007015 AGCD01019647 MODEL 8773692 protein-coding Rad51ap2 RAD51 associated protein 2 FOUND IN protein-containing complex (ortholog) NW_004955469 312601 320227 - 102025563 AGCD01052219;AGCD01052220;GBDF01078994;XM_005415294 XP_005415351 MODEL 8727583 protein-coding Pygl glycogen phosphorylase L ENCODES a protein that exhibits 1,4-alpha-oligoglucan phosphorylase activity (ortholog); AMP binding (ortholog); ATP binding (ortholog); INVOLVED IN 5-phosphoribose 1-diphosphate biosynthetic process (ortholog); glucose homeostasis (ortholog); glycogen catabolic process (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; glycogen degradation pathway; glycogen metabolic pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); genetic disease (ortholog); glycogen storage disease (ortholog) NW_004955409 11970112 12007102 + 102014538 AGCD01009530;GBBH01062062;XM_005376795 XP_005376852 MODEL 39132808 snorna SNORA63 Small nucleolar RNA SNORA63 8762395 protein-coding Prr30 proline rich 30 NW_004955469 9103132 9105680 - 102022182 AGCD01052490;GBDK01061542;XM_005400462 XP_005400519 MODEL 8806811 protein-coding Ppib peptidylprolyl isomerase B ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); RNA polymerase binding (ortholog); INVOLVED IN bone development (ortholog); host-mediated activation of viral genome replication (ortholog); host-mediated activation of viral process (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH genetic disease (ortholog); human immunodeficiency virus infectious disease (ortholog); osteogenesis imperfecta (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum chaperone complex (ortholog); melanosome (ortholog) NW_004955450 11241279 11246628 + 102019007 AGCD01042652;GBCE01002181;XM_005393760 XP_005393817 MODEL 8889872 ncrna LOC102015755 uncharacterized LOC102015755 NW_004955517 1389838 1403846 - 102015755 AGCD01067597;GBCQ01153942;XR_001231819;XR_264541;XR_264542 MODEL 9033445 protein-coding Smco4 single-pass membrane protein with coiled-coil domains 4 NW_004955414 976105 1029825 + 102024890 AGCD01014756;GBBH01006678;GBCE01024628;XM_013512087 XP_013367541 MODEL 8830697 protein-coding Bsph1 binder of sperm protein homolog 1 ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN sperm capacitation (ortholog); FOUND IN cell surface (ortholog) NW_004955609 261937 266866 + 102013675 AGCD01077055;XM_005414937 XP_005414994 MODEL 9042431 protein-coding LOC102010782 cytochrome P450 4A6-like NW_004955464 11443634 11459566 + 102010782 AGCD01050154;GBCQ01010107;XM_005398643 XP_005398700 MODEL 8787254 protein-coding LOC102023492 interferon-induced guanylate-binding protein 1-like NW_004955423 5260597 5285902 + 102023492 AGCD01023558;XM_005385355 XP_005385412 MODEL 8826996 ncrna LOC102028984 uncharacterized LOC102028984 NW_004955495 5401429 5402914 - 102028984 AGCD01062002;GBDF01161759;XR_264154 MODEL 8773557 protein-coding Tp53rk TP53 regulating kinase ENCODES a protein that exhibits p53 binding (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN protein phosphorylation (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); Galloway-Mowat syndrome (ortholog); Galloway-Mowat syndrome 4 (ortholog); FOUND IN cytoplasm (ortholog); EKC/KEOPS complex (ortholog); nucleus (ortholog) NW_004955445 10734723 10737445 + 102016858 AGCD01039678;GBDI01218514;XM_005392371 XP_005392428 MODEL 9032996 pseudo LOC102010378 probable ATP-dependent RNA helicase DDX41 pseudogene NW_004955422 11267452 11268307 - 102010378 AGCD01022753 MODEL 8748014 pseudo LOC102027273 cyclin-I-like NW_004955408 28528039 28539824 + 102027273 AGCD01008714 MODEL 8968137 pseudo LOC102008500 serine/threonine-protein phosphatase 4 regulatory subunit 2-like NW_004955407 23016972 23161621 + 102008500 AGCD01007411;AGCD01007412;AGCD01007413;AGCD01007414;AGCD01007415 MODEL 8867796 pseudo LOC102017656 phosphatase and actin regulator 2 pseudogene NW_004955475 5638964 5641638 - 102017656 AGCD01054924 MODEL 8824881 protein-coding Thumpd2 THUMP domain 2 tRNA and snRNA guanosine methyltransferase ENCODES a protein that exhibits U6 snRNA (guanine-N(2))-methyltransferase activity (ortholog); INVOLVED IN regulation of alternative mRNA splicing, via spliceosome (ortholog); FOUND IN methyltransferase complex (ortholog); nucleus (ortholog); tRNA methyltransferase complex (ortholog) NW_004955441 7329468 7369957 - 102016851 AGCD01036958;AGCD01036959;AGCD01036960;AGCD01036961;GBDJ01125332;XM_005390906;XM_005390907;XM_013517626;XM_013517627 XP_005390963;XP_005390964;XP_013373080;XP_013373081 MODEL 8829073 protein-coding Prdx2 peroxiredoxin 2 ENCODES a protein that exhibits antioxidant activity (ortholog); thioredoxin peroxidase activity (ortholog); thioredoxin-dependent peroxiredoxin activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); defense response to tumor cell (ortholog); homeostasis of number of cells (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); asbestosis (ortholog); carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955415 31880801 31884453 - 102023027 AGCD01016700;GBCE01003406;XM_005381032 XP_005381089 MODEL 9015427 protein-coding Slc5a8 solute carrier family 5 member 8 ENCODES a protein that exhibits lactate transmembrane transporter activity (ortholog); monocarboxylate:sodium symporter activity (ortholog); nicotinate transmembrane transporter activity (ortholog); INVOLVED IN acetate transport (ortholog); chloride transport (ortholog); iodide transport (ortholog); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; ASSOCIATED WITH Colonic Neoplasms (ortholog); hyperuricemia (ortholog); FOUND IN apical plasma membrane (ortholog); GINS complex (ortholog) NW_004955405 36717579 36769074 - 102025972 AGCD01005425;AGCD01005426;AGCD01005427;GBCE01137053;XM_005374548 XP_005374605 MODEL 8704905 protein-coding LOC102028621 zinc finger and SCAN domain-containing protein 29-like NW_004955410 10591936 10671606 + 102028621 AGCD01010796;GBBH01182187;GBCB01089004;XM_005377267 XP_005377324 MODEL 8934594 protein-coding Pdia3 protein disulfide isomerase family A member 3 ENCODES a protein that exhibits identical protein binding (ortholog); lncRNA binding (ortholog); MHC class I protein binding (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); cellular response to nonylphenol (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); asphyxia neonatorum (ortholog); autoimmune hepatitis (ortholog); FOUND IN acrosomal vesicle (ortholog); apical plasma membrane (ortholog); cell surface (ortholog) NW_004955416 10197957 10221104 + 102008100 AGCD01017117;AGCD01017118;AGCD01017119;GBBH01003859;GBDF01008862;XM_013512559 XP_013368013 MODEL 8723359 pseudo LOC102011156 glutathione S-transferase alpha-3 pseudogene NW_004955446 4760282 4767429 + 102011156 AGCD01040045 MODEL 10095784 protein-coding LOC106149946 translation initiation factor IF-2-like NW_004955458 11157507 11161567 + 106149946 AGCD01047725;GBCQ01140813;GBDI01088795;XM_013520808 XP_013376262 MODEL 8893523 pseudo LOC102005551 40S ribosomal protein S3a-like NW_004955451 2638931 2646792 + 102005551 AGCD01043017 MODEL 8807516 protein-coding LOC102015757 acyl-coenzyme A thioesterase 4 NW_004955523 1778663 1781028 - 102015757 AGCD01068542;GBBH01187375;XM_013507141;XM_013507142 XP_013362595;XP_013362596 MODEL 8931635 protein-coding Ptbp1 polypyrimidine tract binding protein 1 ENCODES a protein that exhibits mRNA binding (ortholog); pre-mRNA binding (ortholog); regulatory region RNA binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); cardiac ventricle development (ortholog); IRES-dependent viral translational initiation (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); neuron projection terminus (ortholog); nucleolus (ortholog) NW_004955495 6990565 7002492 - 102019185 AGCD01062109;AGCD01062110;GBBH01001751;XM_005406021;XM_005406023;XM_013505338;XM_013505339 XP_005406078;XP_005406080;XP_013360792;XP_013360793 MODEL 8870975 protein-coding Sesn3 sestrin 3 INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to amino acid stimulus (ortholog); cellular response to glucose starvation (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); GATOR2 complex (ortholog); TORC2 complex (ortholog) NW_004955412 100335 125395 - 102027390 AGCD01012481;GBBH01141125;GBDF01041588;XM_013511114 XP_013366568 MODEL 8962845 protein-coding Smcr8 SMCR8-C9orf72 complex subunit ENCODES a protein that exhibits GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); protein kinase binding (ortholog); INVOLVED IN negative regulation of autophagosome assembly (ortholog); negative regulation of gene expression (ortholog); negative regulation of macroautophagy (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN Atg1/ULK1 kinase complex (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955478 11002174 11015123 - 102020663 AGCD01056157;GBDF01222841;XM_005402280 XP_005402337 MODEL 8878773 protein-coding LOC102012761 peroxisomal bifunctional enzyme-like NW_004955420 22249148 22292098 + 102012761 AGCD01021191;AGCD01021192;AGCD01021193;GBBH01217378;XM_005383300 XP_005383357 MODEL 8707916 protein-coding LOC102011579 pancreatic alpha-amylase NW_004955435 7974418 8023066 + 102011579 AGCD01032983;AGCD01032984;AGCD01032985;AGCD01032986;AGCD01032987;AGCD01032988;AGCD01032989;GBDK01013521;XM_005388812;XM_013516505;XM_013516506 XP_005388869;XP_013371959;XP_013371960 MODEL 8818691 protein-coding Slc16a3 solute carrier family 16 member 3 ENCODES a protein that exhibits lactate transmembrane transporter activity (ortholog); lactate:proton symporter activity (ortholog); pyruvate transmembrane transporter activity (ortholog); INVOLVED IN lactate transmembrane transport (ortholog); plasma membrane lactate transport (ortholog); pyruvate catabolic process (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Stomach Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); lateral plasma membrane (ortholog) NW_004955506 935783 945014 - 102013105 AGCD01065241;GBBH01139889;XM_005407207;XM_013506039;XM_013506040;XM_013506041;XM_013506042 XP_005407264;XP_013361493;XP_013361494;XP_013361495;XP_013361496 MODEL 8831180 protein-coding Trim59 tripartite motif containing 59 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN host-mediated suppression of symbiont invasion (ortholog); innate immune response (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955448 10962181 10971948 - 102004658 AGCD01041507;GBCQ01126672;XM_005393122;XM_005393123;XM_013518598 XP_005393179;XP_005393180;XP_013374052 MODEL 8922337 ncrna LOC102021744 uncharacterized LOC102021744 NW_004955466 3543674 3550573 + 102021744 AGCD01050796;GBDF01211120;XR_263286;XR_263287 MODEL 8811701 pseudo LOC102025920 bleomycin hydrolase pseudogene NW_004955422 24103732 24105230 - 102025920 AGCD01023215 MODEL 8969322 protein-coding Lims1 LIM zinc finger domain containing 1 ENCODES a protein that exhibits protein kinase binding (ortholog); protein-containing complex binding (ortholog); zinc ion binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); actin filament network formation (ortholog); cell-cell adhesion (ortholog); PARTICIPATES IN integrin mediated signaling pathway; FOUND IN cell-cell junction (ortholog); focal adhesion (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955470 12142997 12158273 + 102008399 AGCD01052919;GBBH01209486;GBCQ01093053;XM_013522811 XP_013378265 MODEL 9052009 ncrna LOC102010381 uncharacterized LOC102010381 NW_004955495 7993126 7997095 - 102010381 AGCD01062174;GBCQ01010353;XR_264169 MODEL 8928753 ncrna LOC102019246 uncharacterized LOC102019246 NW_004955408 33245705 33259346 + 102019246 AGCD01008864;AGCD01008865;XR_259729 MODEL 9054931 protein-coding LOC102006635 keratin-associated protein 12-3-like NW_004955407 41624924 41625555 - 102006635 AGCD01007874;XM_013505462 XP_013360916 MODEL 9000649 ncrna LOC102003774 uncharacterized LOC102003774 NW_004955422 13750163 13762795 - 102003774 AGCD01022838;GBCB01073765;XR_001233882;XR_001233883;XR_260871;XR_260872 MODEL 10285545 ncrna LOC106147103 uncharacterized LOC106147103 NW_004955519 2068838 2070831 + 106147103 AGCD01067914;GBDK01163267;XR_001231856 MODEL 8901273 protein-coding Sec16a SEC16 homolog A, endoplasmic reticulum export factor INVOLVED IN endocytic recycling (ortholog); endoplasmic reticulum organization (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955513 4272623 4304314 + 102005288 AGCD01066924;AGCD01066925;GBDK01008049;XM_005408487;XM_005408488;XM_013506686;XM_013506687;XM_013506688;XM_013506689;XM_013506690 XP_005408544;XP_005408545;XP_013362140;XP_013362141;XP_013362142;XP_013362143;XP_013362144 MODEL 10268468 ncrna LOC106148203 uncharacterized LOC106148203 NW_004955417 28145823 28146990 - 106148203 AGCD01018573;GBDJ01381100;XR_001233424 MODEL 8984765 protein-coding Pbx2 PBX homeobox 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN embryonic limb morphogenesis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); proximal/distal pattern formation (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955437 648935 654008 - 102016090 AGCD01034152;GBCB01059412;XM_005389439 XP_005389496 MODEL 8768515 protein-coding Ripk1 receptor interacting serine/threonine kinase 1 ENCODES a protein that exhibits death domain binding (ortholog); death receptor binding (ortholog); identical protein binding (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); amyloid fibril formation (ortholog); apoptotic process (ortholog); PARTICIPATES IN ceramide signaling pathway; FasL mediated signaling pathway; Toll-like receptor signaling pathway; ASSOCIATED WITH Autoinflammation with Episodic Fever and Lymphadenopathy (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN death-inducing signaling complex (ortholog); mitochondrion (ortholog); protein-containing complex (ortholog) NW_004955465 10127907 10167895 - 102016248 AGCD01050502;AGCD01050503;GBDJ01316825;XM_005398899;XM_005398900 XP_005398956;XP_005398957 MODEL 8959727 protein-coding Rad51b RAD51 paralog B ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); double-stranded DNA binding (ortholog); four-way junction DNA binding (ortholog); INVOLVED IN blastocyst growth (ortholog); double-strand break repair via homologous recombination (ortholog); in utero embryonic development (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH Breast Cancer, Familial (ortholog); Breast Neoplasms (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN Rad51B-Rad51C-Rad51D-XRCC2 complex (ortholog); replication fork (ortholog) NW_004955466 1686472 2388146 - 102006230 AGCD01050717;AGCD01050718;AGCD01050719;AGCD01050720;AGCD01050721;AGCD01050722;AGCD01050723;AGCD01050724;AGCD01050725;AGCD01050726;AGCD01050727;AGCD01050728;AGCD01050729;AGCD01050730;AGCD01050731;AGCD01050732;AGCD01050733;AGCD01050734;AGCD01050735;AGCD01050736;GBBH01025954;XM_005399051;XM_005399052;XM_013521905;XM_013521906;XM_013521907;XM_013521908;XM_013521909;XM_013521910;XM_013521912;XM_013521913;XM_013521914;XM_013521915;XM_013521916;XM_013521917;XR_001236784;XR_001236785;XR_001236786;XR_001236787;XR_001236788;XR_001236789;XR_001236790;XR_001236791 XP_005399108;XP_005399109;XP_013377359;XP_013377360;XP_013377361;XP_013377362;XP_013377363;XP_013377364;XP_013377366;XP_013377367;XP_013377368;XP_013377369;XP_013377370;XP_013377371 MODEL 8995090 protein-coding LOC102017662 histone H4 NW_004955483 846605 850748 + 102017662 AGCD01057634;XM_013503799 XP_013359253 MODEL 8724386 pseudo LOC102026283 aldo-keto reductase family 1 member B10 pseudogene NW_004955404 33377343 33378282 - 102026283 AGCD01004060 MODEL 8744590 protein-coding LOC102027962 olfactory receptor 6K2 NW_004955468 10557726 10558673 - 102027962 AGCD01052086;XM_005400157 XP_005400214 MODEL 39133329 snrna U4 U4 spliceosomal RNA 8904407 ncrna LOC102030409 uncharacterized LOC102030409 NW_004955414 3222440 3227308 + 102030409 AGCD01014817;GBDF01279226;XR_260150 MODEL 8790057 protein-coding Wdr24 WD repeat domain 24 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to nutrient levels (ortholog); positive regulation of protein kinase activity (ortholog); PARTICIPATES IN mTOR signaling pathway; FOUND IN GATOR2 complex (ortholog); lysosomal membrane (ortholog) NW_004955442 16513074 16519296 + 102019336 AGCD01037901;GBDJ01084560;XM_005391617;XM_005391618 XP_005391674;XP_005391675 MODEL 8777927 pseudo LOC102023496 mortality factor 4-like protein 2 NW_004955424 12730315 12770211 - 102023496 AGCD01024618;AGCD01024619 MODEL 8707537 protein-coding Bspry B-box and SPRY domain containing INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); FOUND IN cell leading edge (ortholog); cytosol (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955419 14124167 14139181 - 102027074 AGCD01020012;GBCE01170004;GBDI01012219;XM_013513135 XP_013368589 MODEL 8855840 protein-coding LOC102030411 olfactory receptor 51G2-like NW_004955414 20885873 20887958 - 102030411 AGCD01015395;XM_013511728 XP_013367182 MODEL 8954543 protein-coding Pld2 phospholipase D2 ENCODES a protein that exhibits D-type glycerophospholipase activity (ortholog); protein kinase C binding (ortholog); INVOLVED IN cellular response to phorbol 13-acetate 12-myristate (ortholog); G protein-coupled receptor internalization (ortholog); neuron projection development (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; glycerophospholipid metabolic pathway; mTOR signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); congestive heart failure (ortholog); Experimental Seizures (ortholog); FOUND IN brush border membrane (ortholog); caveola (ortholog); lamellipodium (ortholog) NW_004955467 10239177 10250516 + 102016147 AGCD01051558;GBBH01166668;XM_005399602;XM_013522221;XM_013522222 XP_005399659;XP_013377675;XP_013377676 MODEL 9027751 ncrna LOC102012771 uncharacterized LOC102012771 NW_004955422 26067668 26092884 - 102012771 AGCD01023274;AGCD01023275;GBDI01368464;XR_260916 MODEL 8874428 protein-coding Rusf1 RUS family member 1 NW_004955493 8329618 8341009 - 102008546 AGCD01061291;GBCE01000932;XM_005405326 XP_005405383 MODEL 39132802 snorna SNORA63 Small nucleolar RNA SNORA63 10117645 ncrna LOC106147104 uncharacterized LOC106147104 NW_004955408 30140623 30150670 - 106147104 AGCD01008799;GBDF01155921;XR_001231858 MODEL 8845562 protein-coding Trim6 tripartite motif containing 6 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); identical protein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to interferon-beta (ortholog); cellular response to virus (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955414 21495593 21513703 + 102008616 AGCD01015422;GBDF01054312;XM_005380095;XM_013511994;XM_013511995;XM_013511997;XM_013511998;XM_013511999 XP_005380152;XP_013367448;XP_013367449;XP_013367451;XP_013367452;XP_013367453 MODEL 8930779 protein-coding Snx13 sorting nexin 13 ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN intracellular protein transport (ortholog); positive regulation of GTPase activity (ortholog); PARTICIPATES IN epinephrine signaling pathway via adrenergic receptor beta; G protein mediated signaling pathway via Galphas family; FOUND IN early endosome (ortholog) NW_004955410 20792659 20925907 - 102024195 AGCD01011052;AGCD01011053;AGCD01011054;GBCE01070030;XM_005377341;XM_005377342 XP_005377398;XP_005377399 MODEL 9025335 protein-coding Slc16a4 solute carrier family 16 member 4 NW_004955435 13865956 13892687 - 102017378 AGCD01033212;GBCB01050157;XM_005388918;XM_005388919;XM_005388920;XM_013516513;XM_013516515;XM_013516516;XM_013516517 XP_005388975;XP_005388976;XP_005388977;XP_013371967;XP_013371969;XP_013371970;XP_013371971 MODEL 8800326 protein-coding Slc5a9 solute carrier family 5 member 9 NW_004955464 10378071 10407597 - 102005123 AGCD01050125;GBCQ01095601;XM_005398631;XM_005398634;XM_005398636;XM_013521753;XM_013521754;XM_013521755;XM_013521756;XM_013521757 XP_005398688;XP_005398691;XP_005398693;XP_013377207;XP_013377208;XP_013377209;XP_013377210;XP_013377211 MODEL 8780924 pseudo LOC102017663 nuclear receptor-binding factor 2 pseudogene NW_004955419 27290865 27292952 + 102017663 AGCD01020429 MODEL 8910796 protein-coding Sec16b SEC16 homolog B, endoplasmic reticulum export factor INVOLVED IN endoplasmic reticulum organization (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ER-dependent peroxisome organization (ortholog); ASSOCIATED WITH Body Weight (ortholog); FOUND IN endoplasmic reticulum exit site (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955406 17458699 17509379 - 102022162 AGCD01006011;GBDK01263428;XM_013520997;XM_013521001;XM_013521007;XM_013521010;XM_013521012;XM_013521014 XP_013376451;XP_013376455;XP_013376461;XP_013376464;XP_013376466;XP_013376468 MODEL 8896440 protein-coding Pdia4 protein disulfide isomerase family A member 4 ENCODES a protein that exhibits integrin binding (ortholog); protein disulfide isomerase activity (ortholog); protein-disulfide reductase activity (ortholog); INVOLVED IN blood coagulation, fibrin clot formation (ortholog); platelet aggregation (ortholog); positive regulation of protein folding (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; FOUND IN cell surface (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum chaperone complex (ortholog) NW_004955491 4344874 4360205 - 102010172 AGCD01060429;AGCD01060430;GBDJ01020910;XM_005404741 XP_005404798 MODEL 8927086 ncrna LOC102026287 uncharacterized LOC102026287 NW_004955453 11757646 11768609 + 102026287 AGCD01044814;GBDK01365189;XR_262728 MODEL 8728107 protein-coding Tp53tg5 TP53 target 5 FOUND IN chromosome (ortholog); nucleolus (ortholog) NW_004955445 11958649 11962623 + 102007163 AGCD01039730;GBDF01044016;XM_005392432;XM_005392433 XP_005392489;XP_005392490 MODEL 9001229 ncrna LOC102027274 uncharacterized LOC102027274 NW_004955458 14089542 14094861 + 102027274 AGCD01047823;GBDI01338435;XR_262997 MODEL 8763827 ncrna LOC102015771 uncharacterized LOC102015771 NW_004955439 4407806 4419003 + 102015771 AGCD01035709;GBBH01021909;XR_261971 MODEL 8701648 protein-coding Rfc3 replication factor C subunit 3 ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); DNA binding (ortholog); DNA clamp loader activity (ortholog); INVOLVED IN DNA replication (ortholog); DNA-templated DNA replication (ortholog); positive regulation of DNA-directed DNA polymerase activity (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; FOUND IN Ctf18 RFC-like complex (ortholog); DNA replication factor C complex (ortholog); nucleoplasm (ortholog) NW_004955431 12071465 12084570 - 102007456 AGCD01030254;GBCB01075231;XM_005387702 XP_005387759 MODEL 9014495 protein-coding LOC102024494 chromosome unknown open reading frame, human C9orf153 NW_004955432 1362227 1386118 + 102024494 AGCD01030592;GBDF01124972;XM_005387917;XM_005387918;XM_005387920;XM_013515949 XP_005387974;XP_005387975;XP_005387977;XP_013371403 MODEL 9000602 protein-coding Pygm glycogen phosphorylase, muscle associated ENCODES a protein that exhibits 1,4-alpha-oligoglucan phosphorylase activity (ortholog); AMP binding (ortholog); carbohydrate binding (ortholog); INVOLVED IN glycogen catabolic process (ortholog); glycogen metabolic process (ortholog); intracellular calcium ion homeostasis (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH cholestasis (ortholog); Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); FOUND IN sarcoplasmic reticulum (ortholog) NW_004955422 20411480 20424676 + 102030205 AGCD01023079;GBBH01100132;XM_005384564 XP_005384621 MODEL 8960196 pseudo LOC102021745 28S ribosomal protein S36, mitochondrial pseudogene NW_004955412 24132530 24132928 - 102021745 AGCD01013110;XM_005378380 MODEL 9041847 protein-coding Sec22a SEC22 homolog A, vesicle trafficking protein INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955427 22389552 22456149 + 102014266 AGCD01027466;AGCD01027467;AGCD01027468;GBDF01220231;XM_005386526;XM_013515189;XM_013515190 XP_005386583;XP_013370643;XP_013370644 MODEL 8773654 protein-coding Ppic peptidylprolyl isomerase C ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); ASSOCIATED WITH Stomach Neoplasms (ortholog) NW_004955521 1138779 1143345 - 102021698 AGCD01068173;AGCD01068174;GBCQ01070591;GBCQ01098286;XM_013507085 XP_013362539 MODEL 8749442 protein-coding Thumpd3 THUMP domain 3 tRNA guanosine methyltransferase ENCODES a protein that exhibits tRNA (guanine(6)-N2)-methyltransferase activity (ortholog); tRNA (guanine(7)-N2)-methyltransferase activity (ortholog); INVOLVED IN tRNA methylation (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955561 933168 956457 + 102028693 AGCD01073827;GBDI01041484;XM_005413004;XM_005413005 XP_005413061;XP_005413062 MODEL 10132731 protein-coding LOC106148204 uncharacterized LOC106148204 NW_004955417 6769156 6810734 - 106148204 AGCD01017989;AGCD01017990;GBDF01308018;GBDI01314698;XM_013512754 XP_013368208 MODEL 8904569 pseudo LOC102010786 sodium- and chloride-dependent creatine transporter 1 pseudogene NW_004955412 1303340 1305225 + 102010786 AGCD01012514;XM_005378613 MODEL 10099518 protein-coding LOC106149947 inner nuclear membrane protein Man1-like NW_004955458 11883317 11883667 + 106149947 AGCD01047762;GBDF01076502;XM_013520809 XP_013376263 MODEL 8871379 protein-coding Rbl1 RB transcriptional corepressor like 1 ENCODES a protein that exhibits promoter-specific chromatin binding (ortholog); INVOLVED IN negative regulation of cellular senescence (ortholog); negative regulation of gene expression (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN G1/S transition pathway; FOUND IN nucleoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955422 24620068 24695203 + 102016391 AGCD01023226;AGCD01023227;GBDF01252467;XM_005384716;XM_005384718;XM_013514137 XP_005384773;XP_005384775;XP_013369591 MODEL 39132805 snorna SNORA63 Small nucleolar RNA SNORA63 8716228 protein-coding LOC102012773 fatty acid-binding protein, liver NW_004955424 624397 629958 + 102012773 AGCD01024188;GBCQ01000092;XM_005385381 XP_005385438 MODEL 8828295 protein-coding Rad51c RAD51 paralog C ENCODES a protein that exhibits crossover junction DNA endonuclease activity (ortholog); four-way junction DNA binding (ortholog); INVOLVED IN DNA recombination (ortholog); DNA repair (ortholog); double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); breast carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955451 4053195 4178226 - 102017412 AGCD01043089;AGCD01043090;AGCD01043091;AGCD01043092;AGCD01043093;AGCD01043094;AGCD01043095;AGCD01043096;GBDF01190598;XM_005393995;XM_005393996;XM_005393997;XM_013519222;XM_013519223;XR_001235967 XP_005394052;XP_005394053;XP_005394054;XP_013374676;XP_013374677 MODEL 9050628 ncrna LOC102018808 uncharacterized LOC102018808 NW_004955409 12167060 12175776 - 102018808 AGCD01009538;GBCE01171561;XR_001232649 MODEL 8705883 ncrna LOC102011583 uncharacterized LOC102011583 NW_004955436 8909255 8926076 + 102011583 AGCD01033752;AGCD01033753;AGCD01033754;GBDI01265317;XR_001234994;XR_261775;XR_261776 MODEL 9032099 protein-coding Ptbp2 polypyrimidine tract binding protein 2 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN cerebellum development (ortholog); mRNA splice site recognition (ortholog); negative regulation of RNA splicing (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN growth cone (ortholog); neuronal cell body (ortholog); spliceosomal complex (ortholog) NW_004955435 1703588 1773016 + 102027223 AGCD01032752;AGCD01032753;GBCB01041750;GBDF01051639;XM_005388785;XM_013516507;XM_013516508;XM_013516509 XP_005388842;XP_013371961;XP_013371962;XP_013371963 MODEL 8920384 protein-coding Slc60a1 solute carrier family 60 member 1 ASSOCIATED WITH cholangiocarcinoma (ortholog) NW_004955406 41286679 41315666 + 102010023 AGCD01006677;GBDJ01061263;XM_005375362 XP_005375419 MODEL 8882643 protein-coding Smdt1 single-pass membrane protein with aspartate rich tail 1 ENCODES a protein that exhibits channel activator activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN calcium import into the mitochondrion (ortholog); cellular response to calcium ion starvation (ortholog); mitochondrial calcium ion homeostasis (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); uniplex complex (ortholog) NW_004955413 27480938 27485729 + 102004688 AGCD01014509;GBDF01082917;XM_005379397;XM_005379398;XM_013511583 XP_005379454;XP_005379455;XP_013367037 MODEL 8834409 protein-coding Prr34 PRR34 long non-coding RNA NW_004955413 30237791 30247142 - 102006761 AGCD01014603;GBDI01370966;XM_013511589 XP_013367043 MODEL 8802498 protein-coding LOC102025923 zinc finger protein 561-like NW_004955495 1061087 1095931 - 102025923 AGCD01061671;AGCD01061672;AGCD01061673;GBDF01305511;XM_013505080;XM_013505081 XP_013360534;XP_013360535 MODEL 8761013 protein-coding LOC102028623 olfactory receptor 8B3-like NW_004955412 25172675 25195852 - 102028623 AGCD01013138;AGCD01013139;AGCD01013140;XM_005378649;XM_013511249 XP_005378706;XP_013366703 MODEL 8795351 protein-coding LOC102003778 cationic trypsin-3-like NW_004955494 1217574 1223680 + 102003778 AGCD01061392;XM_013504918 XP_013360372 MODEL 8890908 protein-coding LOC102024496 zinc finger protein 709-like NW_004955432 4600161 4605984 + 102024496 AGCD01030730;AGCD01030731;GBDF01262659;XM_013515925 XP_013371379 MODEL 8828266 protein-coding Pld3 phospholipase D family member 3 ENCODES a protein that exhibits 5'-3' DNA exonuclease activity (ortholog); 5'-3' RNA exonuclease activity (ortholog); acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); INVOLVED IN innate immune response (ortholog); negative regulation of toll-like receptor 9 signaling pathway (ortholog); positive regulation of intralumenal vesicle formation (ortholog); ASSOCIATED WITH Alzheimer's disease 19 (ortholog); COVID-19 (ortholog); spinocerebellar ataxia 46 (ortholog); FOUND IN early endosome membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955578 884700 905426 - 102016536 AGCD01075500;GBCE01000031;XM_005414062;XM_005414063;XM_005414064;XM_005414066;XM_013509653;XM_013509654 XP_005414119;XP_005414120;XP_005414121;XP_005414123;XP_013365107;XP_013365108 MODEL 8737570 protein-coding LOC102011157 olfactory receptor 2B11-like NW_004955576 1315227 1322081 + 102011157 AGCD01075372;XM_005413952 XP_005414009 MODEL 8877649 protein-coding Emx2 empty spiracles homeobox 2 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); brain development (ortholog); cell proliferation in forebrain (ortholog); ASSOCIATED WITH colorectal adenocarcinoma (ortholog); colorectal cancer (ortholog); esophagus adenocarcinoma (ortholog) NW_004955431 22192446 22199141 + 102030337 AGCD01030511;GBDF01112545;XM_005387875 XP_005387932 MODEL 9050425 ncrna LOC102009632 uncharacterized LOC102009632 NW_004955427 7305557 7312900 - 102009632 AGCD01027048;GBDF01114554;XR_261237 MODEL 8978307 ncrna LOC102008501 uncharacterized LOC102008501 NW_004955457 7028448 7038296 + 102008501 AGCD01046864;GBCB01099923;XR_262927 MODEL 9067068 protein-coding Ppid peptidylprolyl isomerase D ENCODES a protein that exhibits cyclosporin A binding (ortholog); enzyme binding (ortholog); heat shock protein binding (ortholog); INVOLVED IN cellular response to UV-A (ortholog); lipid droplet organization (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN estrogen signaling pathway; ASSOCIATED WITH brain ischemia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955471 12309224 12323198 - 102018917 AGCD01053285;AGCD01053286;GBDI01137437;XM_005400965 XP_005401022 MODEL 8814934 protein-coding Trim62 tripartite motif containing 62 ENCODES a protein that exhibits identical protein binding (ortholog); transcription coactivator activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); negative regulation of epithelial to mesenchymal transition (ortholog); positive regulation of antifungal innate immune response (ortholog); FOUND IN cytoplasm (ortholog) NW_004955452 11348001 11377413 - 102006865 AGCD01044335;GBCB01025292;XM_005395108 XP_005395165 MODEL 9014895 protein-coding Sestd1 SEC14 and spectrin domain containing 1 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); phosphatidic acid binding (ortholog); phosphatidylcholine binding (ortholog); INVOLVED IN negative regulation of calcium ion transmembrane transport via high voltage-gated calcium channel (ortholog); ASSOCIATED WITH Weight Gain (ortholog); FOUND IN calcium channel complex (ortholog); intermediate filament cytoskeleton (ortholog) NW_004955403 17761404 17835528 + 102023421 AGCD01002086;AGCD01002087;GBDK01231007;XM_005373365;XM_005373367;XM_013512590 XP_005373422;XP_005373424;XP_013368044 MODEL 8724588 protein-coding LOC102007016 2'-5'-oligoadenylate synthase 1-like NW_004955482 9316087 9321788 + 102007016 AGCD01057564;AGCD01057565;GBBH01096422;GBDI01244956;XM_013503740 XP_013359194 MODEL 8718917 protein-coding Lims2 LIM zinc finger domain containing 2 INVOLVED IN cell-cell adhesion (ortholog); cell-cell junction organization (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2W (ortholog); lymphopenia (ortholog); neutropenia (ortholog); FOUND IN focal adhesion (ortholog) NW_004955459 2874282 2913956 + 102027722 AGCD01048004;GBCB01111199;XM_005397601;XM_005397602;XM_005397604;XM_013521048 XP_005397658;XP_005397659;XP_005397661;XP_013376502 MODEL 8897338 protein-coding Wdr25 WD repeat domain 25 ASSOCIATED WITH long QT syndrome (ortholog) NW_004955438 21445502 21570271 + 102018335 AGCD01035544;AGCD01035545;AGCD01035546;AGCD01035547;GBBH01071352;GBDF01122161;XM_005390456 XP_005390513 MODEL 8940320 protein-coding Bst1 bone marrow stromal cell antigen 1 ENCODES a protein that exhibits NAD+ nucleosidase activity, cyclic ADP-ribose generating (ortholog); INVOLVED IN positive regulation of cell population proliferation (ortholog); regulation of actin cytoskeleton organization (ortholog); regulation of calcium-mediated signaling (ortholog); PARTICIPATES IN ADP-ribosylation pathway, cyclic ribosylation; niacin metabolic pathway; ASSOCIATED WITH lung disease (ortholog); Parkinson's disease (ortholog); FOUND IN plasma membrane (ortholog); uropod (ortholog) NW_004955480 8273887 8304127 - 102015953 AGCD01056717;AGCD01056718;GBDJ01403584;XM_005402522 XP_005402579 MODEL 8809134 ncrna LOC102010382 uncharacterized LOC102010382 NW_004955424 3479982 3493499 + 102010382 AGCD01024311;GBDF01055317;XR_001234144 MODEL 8834822 protein-coding Slc16a5 solute carrier family 16 member 5 NW_004955553 1969371 1996170 + 102019441 AGCD01072910;AGCD01072911;GBBH01219043;XM_013508643;XM_013508644;XM_013508645;XM_013508646;XM_013508647 XP_013364097;XP_013364098;XP_013364099;XP_013364100;XP_013364101 MODEL 8735859 ncrna LOC102019247 uncharacterized LOC102019247 NW_004955458 10688241 10689288 + 102019247 AGCD01047701;GBCQ01143269;XR_262993 MODEL 8749579 protein-coding Prdx3 peroxiredoxin 3 ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity involved in apoptotic process (ortholog); identical protein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); cellular response to reactive oxygen species (ortholog); hydrogen peroxide catabolic process (ortholog); ASSOCIATED WITH autosomal recessive cerebellar ataxia (ortholog); autosomal recessive spinocerebellar ataxia 32 (ortholog); CORNEAL DYSTROPHY, PUNCTIFORM AND POLYCHROMATIC PRE-DESCEMET (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955431 23640775 23651738 - 102006940 AGCD01030547;GBDK01092760;XM_005387887 XP_005387944 MODEL 8979735 ncrna LOC102006638 uncharacterized LOC102006638 NW_004955409 9973340 9976636 - 102006638 AGCD01009449;GBDF01306881;XR_259765 MODEL 8788689 protein-coding Pygo1 pygopus family PHD finger 1 ENCODES a protein that exhibits histone H3K4me3 reader activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); hematopoietic progenitor cell differentiation (ortholog); kidney development (ortholog); FOUND IN nucleus (ortholog) NW_004955409 446548 459139 + 102020222 AGCD01009148;AGCD01009149;GBBH01036528;GBCB01072777;XM_013510021 XP_013365475 MODEL 8739462 protein-coding Pbx3 PBX homeobox 3 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); dorsal spinal cord development (ortholog); neuron development (ortholog); ASSOCIATED WITH Congenital Heart Defects, Multiple Types (ortholog); esophagus squamous cell carcinoma (ortholog); X-linked cone-rod dystrophy 1 (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955419 2419081 2624299 - 102011770 AGCD01019677;AGCD01019678;AGCD01019679;AGCD01019680;GBCB01008423;GBDF01128616;XM_013513216 XP_013368670 MODEL 9066813 ncrna LOC102028988 uncharacterized LOC102028988 NW_004955424 18631642 18646262 - 102028988 AGCD01024787;GBDF01117807;XR_261077 MODEL 8836600 protein-coding Rfc4 replication factor C subunit 4 ENCODES a protein that exhibits DNA clamp loader activity (ortholog); enzyme binding (ortholog); single-stranded DNA helicase activity (ortholog); INVOLVED IN DNA-templated DNA replication (ortholog); positive regulation of DNA-directed DNA polymerase activity (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); MORIMOTO-RYU-MALICDAN NEUROMUSCULAR SYNDROME (ortholog); FOUND IN Ctf18 RFC-like complex (ortholog); DNA replication factor C complex (ortholog); Elg1 RFC-like complex (ortholog) NW_004955420 20948549 20967845 + 102028973 AGCD01021114;AGCD01021115;AGCD01021116;AGCD01021117;GBBH01051801;XM_005383263 XP_005383320 MODEL 8991425 protein-coding Ptbp3 polypyrimidine tract binding protein 3 INVOLVED IN negative regulation of mRNA splicing, via spliceosome (ortholog); negative regulation of RNA splicing (ortholog); regulation of cell differentiation (ortholog) NW_004955419 15002780 15101588 + 102005474 AGCD01020055;AGCD01020056;AGCD01020057;GBDF01088480;GBDF01088481;XM_013513256;XM_013513257;XM_013513258;XM_013513259 XP_013368710;XP_013368711;XP_013368712;XP_013368713 MODEL 8789734 pseudo LOC102005556 ATP-binding cassette sub-family F member 2 pseudogene NW_004955406 13707389 13709243 + 102005556 AGCD01005949 MODEL 8802499 protein-coding Prr35 proline rich 35 NW_004955442 16639379 16644669 - 102025948 AGCD01037905;GBCQ01101664;XM_005391639;XM_005391640 XP_005391696;XP_005391697 MODEL 39133331 snrna U4 U4 spliceosomal RNA 9003366 protein-coding LOC102021746 leucine-rich repeat-containing protein 9 NW_004955466 9624286 9721243 - 102021746 AGCD01051047;AGCD01051048;AGCD01051049;AGCD01051050;AGCD01051051;GBDK01266613;XM_013522015 XP_013377469 MODEL 8742613 protein-coding LOC102027963 tigger transposable element-derived protein 1-like NW_004955469 6511530 6512707 + 102027963 AGCD01052390;XM_005400387 XP_005400444 MODEL 8788094 ncrna LOC102023499 uncharacterized LOC102023499 NW_004955426 18323676 18326033 + 102023499 AGCD01026520;GBDF01177224;XR_261201 MODEL 10071292 ncrna LOC106148205 uncharacterized LOC106148205 NW_004955417 24076192 24082685 - 106148205 AGCD01018451;XR_001233433;XR_001233434;XR_001233435 MODEL 10372417 ncrna LOC106149948 uncharacterized LOC106149948 NW_004955458 3788482 3798974 + 106149948 AGCD01047345;AGCD01047346;AGCD01047347;GBCE01168228;XR_001236438 MODEL 8940884 pseudo LOC102017664 HAUS augmin-like complex subunit 2 pseudogene NW_004955419 29773998 29774848 - 102017664 AGCD01020502 MODEL 39132811 snorna SNORA63D Small nucleolar RNA SNORA63 8826626 protein-coding LOC102010789 histone H1.0 ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN chromosome condensation (ortholog); heterochromatin formation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); COVID-19 (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); euchromatin (ortholog) NW_004955413 24182547 24184588 + 102010789 AGCD01014355;GBBH01030914;XM_005379227 XP_005379284 MODEL 8906081 ncrna LOC102026292 uncharacterized LOC102026292 NW_004955407 33517086 33536278 + 102026292 AGCD01007701;GBDF01081559;XR_259601 MODEL 9033234 protein-coding Tp63 tumor protein p63 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN DNA damage response (ortholog); epidermis development (ortholog); epithelial cell development (ortholog); PARTICIPATES IN altered p53 signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); ADULT syndrome (ortholog); Ankyloblepharon Filiforme Adnatum (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955420 18178639 18384786 - 102017241 AGCD01021040;AGCD01021041;AGCD01021042;AGCD01021043;AGCD01021044;GBDI01256795;XM_005383230;XM_005383231;XM_005383232;XM_005383233;XM_005383234;XM_005383235;XM_013513584 XP_005383287;XP_005383288;XP_005383289;XP_005383290;XP_005383291;XP_005383292;XP_013369038 MODEL 8946790 pseudo LOC102030419 chromobox protein homolog 3 pseudogene NW_004955416 15809832 15810607 + 102030419 AGCD01017343 MODEL 8780185 ncrna LOC102018813 uncharacterized LOC102018813 NW_004955462 2479323 2494809 + 102018813 AGCD01049169;GBDJ01029436;XR_001236615 MODEL 8769669 ncrna LOC102011584 uncharacterized LOC102011584 NW_004955436 18651414 18692957 + 102011584 AGCD01033976;AGCD01033977;AGCD01033978;GBDF01154303;XR_001234938;XR_001234939 MODEL 8899261 protein-coding Slc61a1 solute carrier family 61 member 1 ENCODES a protein that exhibits molybdate ion transmembrane transporter activity (ortholog); INVOLVED IN molybdate ion transport (ortholog); response to food (ortholog); response to starvation (ortholog) NW_004955458 519566 521778 + 102016671 AGCD01047131;GBBH01228192;XM_005397163 XP_005397220 MODEL 8995959 protein-coding Sec22b SEC22 homolog B, vesicle trafficking protein INVOLVED IN negative regulation of autophagosome assembly (ortholog); positive regulation of protein catabolic process (ortholog); vesicle-mediated transport (ortholog); FOUND IN COPI-coated vesicle (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955568 1559519 1587782 + 102018869 AGCD01074547;AGCD01074548;AGCD01074549;AGCD01074550;GBDF01160336;XM_005413480 XP_005413537 MODEL 9037413 pseudo LOC102003782 solute carrier organic anion transporter family member 4C1 pseudogene NW_004955496 8201732 8203098 - 102003782 AGCD01062392 MODEL 9059601 pseudo LOC102024497 translocation protein SEC62 pseudogene NW_004955518 4379872 4381320 + 102024497 AGCD01067828 MODEL 9068109 protein-coding Pdia5 protein disulfide isomerase family A member 5 ENCODES a protein that exhibits protein disulfide isomerase activity (ortholog); protein-disulfide reductase activity (ortholog); INVOLVED IN protein folding (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955427 22268730 22356123 + 102013954 AGCD01027465;GBDF01014374;XM_005386524 XP_005386581 MODEL 8839748 protein-coding En1 engrailed homeobox 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); cerebellum development (ortholog); dorsal/ventral pattern formation (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); ENDOVE SYNDROME, LIMB-BRAIN TYPE (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955459 10839581 10844198 + 102008704 AGCD01048200;GBCB01074283;XM_005397707 XP_005397764 MODEL 8932453 pseudo LOC102015773 something about silencing protein 10-like NW_004955440 3836822 3839886 + 102015773 AGCD01036249 MODEL 8714015 protein-coding LOC102009633 chromosome unknown open reading frame, human C17orf62 INVOLVED IN calcium ion transport (ortholog); gene expression (ortholog); innate immune response (ortholog); ASSOCIATED WITH autosomal recessive chronic granulomatous disease 5 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955506 697091 702900 + 102009633 AGCD01065234;GBCQ01009071;XM_005407199;XM_005407201;XM_005407202;XM_013506085;XM_013506086 XP_005407256;XP_005407258;XP_005407259;XP_013361539;XP_013361540 MODEL 8774794 pseudo LOC102023500 uncharacterized LOC102023500 NW_004955504 3937192 4025553 + 102023500 AGCD01064876 MODEL 9009914 protein-coding Prr36 proline rich 36 NW_004955563 1377887 1383597 + 102020851 AGCD01074144;AGCD01074145;GBBH01205771;XM_005413148 XP_005413205 MODEL 9014511 protein-coding Ruvbl1 RuvB like AAA ATPase 1 ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); ADP binding (ortholog); ATP binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); gene expression (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; FOUND IN ciliary basal body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955429 15598465 15632290 + 102026554 AGCD01028810;AGCD01028811;GBDF01010843;XM_005387045 XP_005387102 MODEL 10245657 ncrna LOC106147105 uncharacterized LOC106147105 NW_004955519 469647 492700 - 106147105 AGCD01067874;AGCD01067875;GBCB01113377;XR_001231862 MODEL 8791821 pseudo LOC102010387 selenide, water dikinase 2-like NW_004955502 7355026 7356276 - 102010387 AGCD01064441 MODEL 8997181 ncrna LOC102007019 uncharacterized LOC102007019 NW_004955420 21387304 21399329 - 102007019 AGCD01021135;GBDK01343956;XR_260734 MODEL 8804447 protein-coding LOC102019249 olfactory receptor 6C6-like NW_004955458 2636013 2646641 - 102019249 AGCD01047240;XM_005397498;XM_013520811 XP_005397555;XP_013376265 MODEL 8763300 ncrna LOC102026293 uncharacterized LOC102026293 NW_004955455 15105232 15140323 + 102026293 AGCD01046099;GBDJ01336182;XR_001236271;XR_262860 MODEL 8761180 protein-coding Wdr26 WD repeat domain 26 ASSOCIATED WITH Developmental Disease (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955520 950505 983963 + 102006813 AGCD01068039;GBBH01167150;GBDF01044046;XM_005409219;XM_013507050 XP_005409276;XP_013362504 MODEL 8704911 protein-coding LOC102028625 lymphoid-restricted membrane protein-like NW_004955413 20134003 20227710 + 102028625 AGCD01014210;AGCD01014211;AGCD01014212;GBDI01212292;XM_013511444;XM_013511445 XP_013366898;XP_013366899 MODEL 8823325 protein-coding Prdx4 peroxiredoxin 4 ENCODES a protein that exhibits identical protein binding (ortholog); molecular adaptor activity (ortholog); molecular sequestering activity (ortholog); INVOLVED IN cell redox homeostasis (ortholog); extracellular matrix organization (ortholog); male gonad development (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); diffuse large B-cell lymphoma (ortholog); Disease Progression (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955509 4111501 4132529 + 102013957 AGCD01066053;GBDF01050840;XM_005407830;XM_005407832;XM_013506292 XP_005407887;XP_005407889;XP_013361746 MODEL 39133271 snrna U4 U4 spliceosomal RNA 8923585 protein-coding Snx14 sorting nexin 14 ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); postsynaptic modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 20 (ortholog); cerebellar ataxia (ortholog); epilepsy (ortholog); FOUND IN late endosome (ortholog); late endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955411 12967980 13048839 - 102020226 AGCD01011862;AGCD01011863;AGCD01011864;AGCD01011865;AGCD01011866;GBDF01122706;XM_005377702;XM_005377703 XP_005377759;XP_005377760 MODEL 8717689 protein-coding Pld4 phospholipase D family member 4 ENCODES a protein that exhibits 5'-3' DNA exonuclease activity (ortholog); 5'-3' RNA exonuclease activity (ortholog); acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); innate immune response (ortholog); phagocytosis (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Mycoplasma pneumoniae pneumonia (ortholog); rheumatoid arthritis (ortholog); FOUND IN early endosome (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955538 3296581 3303187 + 102029444 AGCD01071157;GBDJ01237040;XM_005410848 XP_005410905 MODEL 8914485 protein-coding LOC102027275 probable G-protein coupled receptor 141 NW_004955460 5751048 5751994 - 102027275 AGCD01048457;XM_013521286 XP_013376740 MODEL 9018406 protein-coding Rbl2 RB transcriptional corepressor like 2 ENCODES a protein that exhibits promoter-specific chromatin binding (ortholog); INVOLVED IN negative regulation of gene expression (ortholog); regulation of lipid kinase activity (ortholog); PARTICIPATES IN G1/S transition pathway; ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); Brunet-Wagner neurodevelopmental syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN chromatin (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955433 11185726 11237645 + 102028222 AGCD01031649;GBDJ01191912;XM_005388302;XM_005388305;XM_005388307;XM_013516218 XP_005388359;XP_005388362;XP_005388364;XP_013371672 MODEL 9033835 protein-coding Rad51d RAD51 paralog D ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); ATP-dependent DNA damage sensor activity (ortholog); four-way junction DNA binding (ortholog); INVOLVED IN chromosome organization (ortholog); DNA damage response (ortholog); DNA strand invasion (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH breast cancer (ortholog); Chromosome Deletion (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN centrosome (ortholog); chromosome, telomeric region (ortholog); cytoplasm (ortholog) NW_004955481 9795102 9810426 - 102011205 AGCD01057117;AGCD01057118;GBDK01318937;XM_005402864;XM_005402867;XM_013503403 XP_005402921;XP_005402924;XP_013358857 MODEL 9056289 pseudo LOC102008504 nuclear receptor subfamily 5 group A member 2 pseudogene NW_004955408 668410 669063 + 102008504 AGCD01007925 MODEL 8727457 protein-coding Ripk2 receptor interacting serine/threonine kinase 2 ENCODES a protein that exhibits CARD domain binding (ortholog); caspase binding (ortholog); identical protein binding (ortholog); INVOLVED IN adaptive immune response (ortholog); apoptotic process (ortholog); canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH leprosy (ortholog); ulcerative colitis (ortholog); FOUND IN cytoplasm (ortholog); cytoskeleton (ortholog); cytosol (ortholog) NW_004955417 6669675 6698142 + 102008942 AGCD01017988;GBCE01045721;GBDI01182180;XM_013512753 XP_013368207 MODEL 8720263 pseudo LOC102025925 stathmin pseudogene NW_004955500 7348048 7348466 + 102025925 AGCD01063916 MODEL 8933853 protein-coding Smg1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); telomeric repeat DNA binding (ortholog); INVOLVED IN DNA damage response (ortholog); nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); peptidyl-serine phosphorylation (ortholog); FOUND IN chromatoid body (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955442 2553135 2651772 - 102003069 AGCD01037468;AGCD01037469;AGCD01037470;GBBH01186712;XM_005391088;XM_005391089;XM_005391090;XM_013517825 XP_005391145;XP_005391146;XP_005391147;XP_013373279 MODEL 8857061 protein-coding LOC102018816 uncharacterized LOC102018816 NW_004955412 18081520 18091575 + 102018816 AGCD01012924;GBDF01160803;XM_013510954;XM_013510955;XM_013510956;XM_013510958;XM_013510959 XP_013366408;XP_013366409;XP_013366410;XP_013366412;XP_013366413 MODEL 8831670 protein-coding Tp73 tumor protein p73 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN DNA damage response (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ortholog); kidney development (ortholog); PARTICIPATES IN altered p53 signaling pathway; Ras mediated signaling pathway; ASSOCIATED WITH adenoma (ortholog); adult T-cell leukemia/lymphoma (ortholog); alveolar rhabdomyosarcoma (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955486 7914608 7961992 - 102025470 AGCD01059140;AGCD01059141;GBDJ01182267;XM_005404142;XM_005404143 XP_005404199;XP_005404200 MODEL 9058248 protein-coding Slc16a6 solute carrier family 16 member 6 ASSOCIATED WITH endometriosis (ortholog); FOUND IN basolateral plasma membrane (ortholog) NW_004955478 4449362 4467866 + 102027069 AGCD01055851;GBBH01055718;XM_005402118;XM_005402119 XP_005402175;XP_005402176 MODEL 39131455 protein-coding PYGO1 pygopus family PHD finger 1 9029469 pseudo LOC102011585 small ubiquitin-related modifier 2 pseudogene NW_004955437 7866518 7866791 + 102011585 AGCD01034470 MODEL 8748231 ncrna LOC102011163 uncharacterized LOC102011163 NW_004955450 15153068 15157236 - 102011163 AGCD01042782;GBCB01071256;XR_001235830;XR_001235831 MODEL 9006063 protein-coding Ptcd2 pentatricopeptide repeat domain 2 INVOLVED IN heart development (ortholog); kidney development (ortholog); liver development (ortholog); FOUND IN mitochondrion (ortholog) NW_004955575 1126978 1156727 + 102004763 AGCD01075233;GBDJ01350323;XM_005413937;XM_005413938;XM_013509609 XP_005413994;XP_005413995;XP_013365063 MODEL 8878865 protein-coding Pbxip1 PBX homeobox interacting protein 1 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); transcription coactivator activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN articular cartilage development (ortholog); cell adhesion (ortholog); cell migration (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); COVID-19 (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955545 1451541 1467856 - 102015453 AGCD01071855;GBDF01155848;XM_005411530;XM_005411531;XM_013508336 XP_005411587;XP_005411588;XP_013363790 MODEL 8958348 pseudo LOC102029000 ras-related protein Rap-1b-like protein NW_004955433 6356279 6356817 + 102029000 AGCD01031532;XM_005388491 MODEL 9014846 protein-coding Rfc5 replication factor C subunit 5 ENCODES a protein that exhibits DNA clamp loader activity (ortholog); enzyme binding (ortholog); single-stranded DNA helicase activity (ortholog); INVOLVED IN DNA-templated DNA replication (ortholog); positive regulation of DNA-directed DNA polymerase activity (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; FOUND IN Ctf18 RFC-like complex (ortholog); DNA replication factor C complex (ortholog); Rad17 RFC-like complex (ortholog) NW_004955455 13325912 13337241 - 102020758 AGCD01046069;GBDF01300839;XM_005396539 XP_005396596 MODEL 9019007 ncrna LOC102021747 uncharacterized LOC102021747 NW_004955467 2672508 2696145 - 102021747 AGCD01051319;GBDF01160694;XR_001236840;XR_001236841 MODEL 10197106 ncrna LOC106148206 uncharacterized LOC106148206 NW_004955403 20488326 20489106 + 106148206 AGCD01002160;GBDJ01044473;XR_001233437 MODEL 10338240 ncrna LOC106149949 uncharacterized LOC106149949 NW_004955458 14382215 14392808 - 106149949 AGCD01047832;XR_001236440 MODEL 9023657 pseudo LOC102017668 zinc finger and BTB domain-containing protein 44 pseudogene NW_004955420 24964791 24968106 - 102017668 AGCD01021339 MODEL 8775434 protein-coding Set SET nuclear proto-oncogene INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 58 (ortholog); Developmental Disabilities (ortholog); dysgerminoma (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); lipid droplet (ortholog) NW_004955570 1104447 1117682 + 102025059 AGCD01074788;AGCD01074789;AGCD01074790;GBCC01015512;GBDF01047525;XM_013509410 XP_013364864 MODEL 8982804 protein-coding Ppie peptidylprolyl isomerase E ENCODES a protein that exhibits mRNA binding (ortholog); peptidyl-prolyl cis-trans isomerase activity (ortholog); poly(A) binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); positive regulation of viral genome replication (ortholog); regulation of DNA-templated transcription (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955452 17242255 17256776 + 102028929 AGCD01044545;AGCD01044546;GBBH01228246;GBDJ01225065;XM_013519652 XP_013375106 MODEL 8752356 protein-coding Trim63 tripartite motif containing 63 ENCODES a protein that exhibits titin binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); muscle contraction (ortholog); myotube cell development (ortholog); ASSOCIATED WITH Atrophy (ortholog); Cardiomegaly (ortholog); cardiomyopathy (ortholog); FOUND IN contractile muscle fiber (ortholog); Cul4-RING E3 ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955452 5517969 5531490 - 102012601 AGCD01044038;AGCD01044039;GBDI01181650;XM_005394841 XP_005394898 MODEL 8906564 protein-coding Snx15 sorting nexin 15 FOUND IN cytosol (ortholog) NW_004955422 20149570 20158076 - 102020021 AGCD01023068;GBDF01047995;XM_005384526 XP_005384583 MODEL 9014372 protein-coding Lin28a lin-28 RNA binding posttranscriptional regulator A ENCODES a protein that exhibits G-quadruplex RNA binding (ortholog); miRNA binding (ortholog); mRNA binding (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); germ cell development (ortholog); miRNA catabolic process (ortholog); ASSOCIATED WITH disease of cellular proliferation (ortholog); Neoplasm Invasiveness (ortholog); Neoplastic Cell Transformation (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955452 5793583 5808662 + 102017624 AGCD01044055;GBDF01079508;XM_005394857 XP_005394914 MODEL 8998774 protein-coding Thy1 Thy-1 cell surface antigen ENCODES a protein that exhibits enzyme binding (ortholog); GPI anchor binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell-cell adhesion (ortholog); cell-cell signaling (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH hepatocellular carcinoma (ortholog); Reperfusion Injury (ortholog); retinal disease (ortholog); FOUND IN apical plasma membrane (ortholog); axolemma (ortholog); cell surface (ortholog) NW_004955412 20480284 20484958 - 102008928 AGCD01013009;GBDI01065511;XM_005378342 XP_005378399 MODEL 9014291 pseudo LOC102008506 nucleoplasmin-3 pseudogene NW_004955409 22543962 22544416 - 102008506 AGCD01010041 MODEL 9066203 protein-coding LOC102009638 olfactory receptor 5M11-like NW_004955511 1723110 1724093 + 102009638 AGCD01066377;XM_005407974 XP_005408031 MODEL 9063415 protein-coding Prr5 proline rich 5 INVOLVED IN positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); positive regulation of protein phosphorylation (ortholog); PARTICIPATES IN mTOR signaling pathway; FOUND IN TORC2 complex (ortholog) NW_004955413 29360125 29379196 + 102024888 AGCD01014583;GBCQ01003901;GBCQ01003904;XM_013511543 XP_013366997 MODEL 9030976 protein-coding En2 engrailed homeobox 2 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN embryonic brain development (ortholog); gene expression (ortholog); hindbrain development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Parkinsonism (ortholog); FOUND IN fibrillar center (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955491 8422295 8427038 + 102006355 AGCD01060616;GBCQ01057725;XM_013504574 XP_013360028 MODEL 10391191 ncrna LOC106147106 uncharacterized LOC106147106 NW_004955408 38852674 38865947 + 106147106 AGCD01009053;AGCD01009054;GBDK01293175;XR_001231863 MODEL 8730164 protein-coding Slc66a1 solute carrier family 66 member 1 ENCODES a protein that exhibits basic amino acid transmembrane transporter activity (ortholog); L-arginine transmembrane transporter activity (ortholog); L-histidine transmembrane transporter activity (ortholog); INVOLVED IN intracellular amino acid homeostasis (ortholog); L-arginine transmembrane transport (ortholog); L-histidine transmembrane transport (ortholog); ASSOCIATED WITH cystinosis (ortholog); FOUND IN lysosomal membrane (ortholog) NW_004955452 17459 22259 + 102011076 AGCD01043796;GBDF01154072;XM_013519452 XP_013374906 MODEL 8958327 ncrna LOC102027965 uncharacterized LOC102027965 NW_004955414 33801209 33821054 - 102027965 AGCD01015828;GBDF01252667;XR_001233067;XR_260237 MODEL 8714818 ncrna LOC102019251 uncharacterized LOC102019251 NW_004955409 23260141 23267863 - 102019251 AGCD01010059;GBBH01137462;XR_259787 MODEL 8979090 protein-coding LOC102005559 FUN14 domain-containing protein 1-like NW_004955406 23472527 23473294 - 102005559 AGCD01006171;GBDF01050560;XM_005375060 XP_005375117 MODEL 8704821 ncrna LOC102026295 uncharacterized LOC102026295 NW_004955456 3401369 3403585 - 102026295 AGCD01046271;GBDI01312868;XR_001236351;XR_001236352;XR_262876 MODEL 39132814 snorna SNORA63E Small nucleolar RNA SNORA63 8979819 ncrna LOC102011164 uncharacterized LOC102011164 NW_004955403 2029851 2035069 + 102011164 AGCD01001728;GBDF01163401;XR_001233149;XR_001233150 MODEL 8942378 protein-coding Wdr27 WD repeat domain 27 FOUND IN nucleoplasm (ortholog) NW_004955411 3928775 4123191 + 102021105 AGCD01011562;AGCD01011563;AGCD01011564;AGCD01011565;AGCD01011566;AGCD01011567;AGCD01011568;AGCD01011569;AGCD01011570;AGCD01011571;GBDK01107452;XM_013510744;XM_013510746;XM_013510747;XM_013510748;XM_013510749;XM_013510750 XP_013366198;XP_013366200;XP_013366201;XP_013366202;XP_013366203;XP_013366204 MODEL 8701527 pseudo LOC102030423 ATP synthase F(0) complex subunit B1, mitochondrial pseudogene NW_004955483 339393 341271 - 102030423 AGCD01057606 MODEL 8977027 protein-coding LOC102015774 olfactory receptor 13A1 NW_004955546 2478051 2479302 - 102015774 AGCD01072092;XM_005411791;XM_013508416 XP_005411848;XP_013363870 MODEL 8934945 pseudo LOC102023506 transcription factor SPT20 homolog pseudogene NW_004955509 4726423 4729593 + 102023506 AGCD01066087;AGCD01066088;XM_005407860 MODEL 8960200 protein-coding LOC102021748 putative olfactory receptor 10D4 NW_004955412 24699372 24700304 + 102021748 AGCD01013121;XM_005378634 XP_005378691 MODEL 8980186 protein-coding Pdia6 protein disulfide isomerase family A member 6 ENCODES a protein that exhibits protein disulfide isomerase activity (ortholog); protein-disulfide reductase activity (ortholog); INVOLVED IN IRE1-mediated unfolded protein response (ortholog); negative regulation of IRE1-mediated unfolded protein response (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum chaperone complex (ortholog); endoplasmic reticulum lumen (ortholog) NW_004955487 5735698 5744601 - 102019178 AGCD01059345;GBBH01003820;GBCE01003954;XM_013504373 XP_013359827 MODEL 8771073 protein-coding Rad52 RAD52 DNA repair protein ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); DNA double-strand break processing involved in repair via single-strand annealing (ortholog); DNA recombination (ortholog); ASSOCIATED WITH colon cancer (ortholog); colorectal cancer (ortholog); hepatocellular carcinoma (ortholog); FOUND IN nucleus (ortholog); protein-containing complex (ortholog); protein-DNA complex (ortholog) NW_004955454 6206195 6227859 + 102011082 AGCD01045225;GBDI01263386;XM_005396004;XM_005396005;XM_005396006;XM_005396007;XM_005396008;XM_005396009;XM_013520158;XM_013520160;XM_013520161 XP_005396061;XP_005396062;XP_005396063;XP_005396064;XP_005396065;XP_005396066;XP_013375612;XP_013375614;XP_013375615 MODEL 8976933 pseudo LOC102012779 dynactin subunit 6 pseudogene NW_004955425 21033663 21038693 - 102012779 AGCD01025781 MODEL 8956205 protein-coding Ruvbl2 RuvB like AAA ATPase 2 ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN cellular response to estradiol stimulus (ortholog); cellular response to UV (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); euchromatin (ortholog) NW_004955559 1657241 1674272 - 102026269 AGCD01073658;AGCD01073659;GBDF01009024;XM_005412916 XP_005412973 MODEL 8897189 pseudo LOC102010388 uncharacterized LOC102010388 NW_004955503 3309922 3337412 - 102010388 AGCD01064622 MODEL 8727158 protein-coding Ripk3 receptor interacting serine/threonine kinase 3 ENCODES a protein that exhibits identical protein binding (ortholog); protein kinase activity (ortholog); protein serine kinase activity (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); amyloid fibril formation (ortholog); cellular response to hydrogen peroxide (ortholog); ASSOCIATED WITH Acute-On-Chronic Liver Failure (ortholog); adult respiratory distress syndrome (ortholog); avian influenza (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955409 35961604 35965477 + 102028620 AGCD01010437;GBDF01271691;XM_005377007;XM_005377010;XM_013510393;XM_013510394;XM_013510395;XM_013510396 XP_005377064;XP_005377067;XP_013365847;XP_013365848;XP_013365849;XP_013365850 MODEL 8709255 protein-coding Trim65 tripartite motif containing 65 ENCODES a protein that exhibits protein domain specific binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); negative regulation of inflammatory response (ortholog); negative regulation of NLRP3 inflammasome complex assembly (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955506 6362360 6366743 + 102010076 AGCD01065413;AGCD01065414;GBCE01065169;GBDI01290894;XM_013506003 XP_013361457 MODEL 8855829 ncrna LOC102028627 uncharacterized LOC102028627 NW_004955413 27389823 27402503 - 102028627 AGCD01014504;GBDF01223175;XR_260118;XR_260119 MODEL 8917941 protein-coding Enah ENAH actin regulator ENCODES a protein that exhibits profilin binding (ortholog); SH3 domain binding (ortholog); WW domain binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); actin polymerization or depolymerization (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); hepatocellular carcinoma (ortholog); stomach cancer (ortholog); FOUND IN cytosol (ortholog); filopodium (ortholog); focal adhesion (ortholog) NW_004955520 310482 374800 + 102030115 AGCD01068015;GBDI01069846;XM_013507016 XP_013362470 MODEL 8940184 ncrna LOC102010796 uncharacterized LOC102010796 NW_004955473 4935115 4942810 - 102010796 AGCD01053962;GBDK01418846;XR_001237109;XR_263580 MODEL 9014306 pseudo LOC102011588 uncharacterized LOC102011588 NW_004955437 2264085 2299089 - 102011588 AGCD01034263 MODEL 8889012 protein-coding Slc16a7 solute carrier family 16 member 7 ENCODES a protein that exhibits identical protein binding (ortholog); lactate transmembrane transporter activity (ortholog); pyruvate transmembrane transporter activity (ortholog); INVOLVED IN lactate transmembrane transport (ortholog); plasma membrane lactate transport (ortholog); pyruvate transmembrane transport (ortholog); ASSOCIATED WITH obesity (ortholog); FOUND IN glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); parallel fiber to Purkinje cell synapse (ortholog) NW_004955458 7232886 7352782 + 102014648 AGCD01047582;AGCD01047583;GBDF01156412;XM_005397423;XM_005397424;XM_005397425;XM_005397427 XP_005397480;XP_005397481;XP_005397482;XP_005397484 MODEL 8774127 protein-coding Bsx brain specific homeobox ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN eating behavior (ortholog); locomotory behavior (ortholog); mammary gland involution (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955412 23796973 23801479 - 102019787 AGCD01013095;XM_005378374 XP_005378431 MODEL 8907592 ncrna LOC102006644 uncharacterized LOC102006644 NW_004955466 12342203 12365183 - 102006644 AGCD01051124;AGCD01051125;AGCD01051126;GBDK01153059;XR_263319 MODEL 8725131 ncrna LOC102029002 uncharacterized LOC102029002 NW_004955435 12846623 12859818 + 102029002 AGCD01033169;AGCD01033170;GBDF01276953;XR_261683 MODEL 8772909 protein-coding Pld5 phospholipase D family member 5 ASSOCIATED WITH autistic disorder (ortholog); FOUND IN mitochondrion (ortholog) NW_004955406 5810286 5994601 - 102027264 AGCD01005742;AGCD01005743;AGCD01005744;GBBH01226778;XM_013520242;XM_013520247 XP_013375696;XP_013375701 MODEL 8971068 protein-coding Ptcd3 pentatricopeptide repeat domain 3 ENCODES a protein that exhibits ribosomal small subunit binding (ortholog); rRNA binding (ortholog); INVOLVED IN mitochondrial translation (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 51 (ortholog); genetic disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955424 1480934 1507621 - 102020581 AGCD01024237;GBDI01127765;XM_005385406;XM_013514671;XM_013514672 XP_005385463;XP_013370125;XP_013370126 MODEL 8799360 protein-coding Rbm10 RNA binding motif protein 10 ENCODES a protein that exhibits identical protein binding (ortholog); miRNA binding (ortholog); single-stranded RNA binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); cardiac muscle cell myoblast differentiation (ortholog); mRNA stabilization (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); colorectal cancer (ortholog); congestive heart failure (ortholog); FOUND IN nuclear speck (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955516 904852 934313 - 102022844 AGCD01067404;AGCD01067405;AGCD01067406;GBCE01095320;XM_005408964;XM_005408966;XM_013506926;XM_013506927 XP_005409021;XP_005409023;XP_013362380;XP_013362381 MODEL 8829266 protein-coding Snx16 sorting nexin 16 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN early endosome to late endosome transport (ortholog); endosome to lysosome transport (ortholog); protein targeting to lysosome (ortholog); FOUND IN early endosome (ortholog); endosome membrane (ortholog); late endosome (ortholog) NW_004955417 159369 209166 - 102025356 AGCD01017788;AGCD01017789;AGCD01017790;AGCD01017791;AGCD01017792;AGCD01017793;GBCB01086124;XM_005381722;XM_005381723 XP_005381779;XP_005381780 MODEL 39131382 protein-coding PYGO2 pygopus family PHD finger 2 8987205 pseudo LOC102021750 40S ribosomal protein S15a pseudogene NW_004955469 6142084 6142956 + 102021750 AGCD01052365 MODEL 8854636 protein-coding LOC102015779 sialic acid-binding Ig-like lectin 5 NW_004955558 1125684 1129673 - 102015779 AGCD01073417;GBBH01003390;GBDK01081187;XM_013508886 XP_013364340 MODEL 8756901 protein-coding Tpbg trophoblast glycoprotein INVOLVED IN cell chemotaxis (ortholog); dendrite arborization (ortholog); mesenchymal cell migration (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN axon terminus (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955411 10203144 10206711 + 102015182 AGCD01011775;AGCD01011776;GBBH01076595;XM_013510911 XP_013366365 MODEL 9023126 protein-coding Smg5 SMG5 nonsense mediated mRNA decay factor ENCODES a protein that exhibits histone deacetylase binding (ortholog); protein phosphatase 2A binding (ortholog); telomerase RNA binding (ortholog); INVOLVED IN regulation of dephosphorylation (ortholog); regulation of telomere maintenance (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); nonsense-mediated decay complex (ortholog) NW_004955545 2386877 2418418 - 102024615 AGCD01071898;AGCD01071899;GBDI01125303;XM_005411667;XM_013508269 XP_005411724;XP_013363723 MODEL 9029942 ncrna LOC102012781 uncharacterized LOC102012781 NW_004955506 899099 904521 - 102012781 AGCD01065240;GBCE01032246;XR_264316 MODEL 8965692 protein-coding LOC102027276 NEDD4-like E3 ubiquitin-protein ligase WWP1 NW_004955462 9961294 9964322 + 102027276 AGCD01049347;XM_013521356 XP_013376810 MODEL 8745240 ncrna LOC102027967 uncharacterized LOC102027967 NW_004955415 11564264 11568777 + 102027967 AGCD01016165;GBDF01236055;XR_260279 MODEL 10285570 ncrna LOC106149950 uncharacterized LOC106149950 NW_004955458 4878926 4881805 - 106149950 AGCD01047444;GBDK01106220;XR_001236443 MODEL 9042174 protein-coding Pc pyruvate carboxylase ENCODES a protein that exhibits biotin binding (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN branched-chain amino acid catabolic process (ortholog); gluconeogenesis (ortholog); host-mediated activation of viral process (ortholog); PARTICIPATES IN alanine metabolic pathway; citric acid cycle pathway; fructose-1,6-bisphosphatase deficiency pathway; ASSOCIATED WITH bipolar disorder (ortholog); Burkitt lymphoma (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955422 18421100 18536591 + 102028201 AGCD01022949;AGCD01022950;AGCD01022951;GBCQ01011657;XM_005384364;XM_005384365;XM_005384366;XM_005384367;XM_005384368;XM_005384369;XM_005384370 XP_005384421;XP_005384422;XP_005384423;XP_005384424;XP_005384425;XP_005384426;XP_005384427 MODEL 8907434 protein-coding Setbp1 SET binding protein 1 ASSOCIATED WITH atrial heart septal defect (ortholog); atypical chronic myeloid leukemia, BCR-ABL1 negative (ortholog); autosomal dominant intellectual developmental disorder 29 (ortholog); FOUND IN nuclear body (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955402 30380346 30738869 + 102026697 AGCD01000770;AGCD01000771;AGCD01000772;AGCD01000773;AGCD01000774;AGCD01000775;AGCD01000776;AGCD01000777;AGCD01000778;GBCE01116826;XM_005373166 XP_005373223 MODEL 8743490 ncrna LOC102007021 uncharacterized LOC102007021 NW_004955420 24298864 24300985 - 102007021 AGCD01021290;GBCQ01057710;XR_260746;XR_260747;XR_260748 MODEL 39131454 protein-coding LIN28B lin-28 homolog B 8879327 pseudo LOC102003785 translocation protein SEC62-like NW_004955426 65589 86951 + 102003785 AGCD01025993 MODEL 8737796 ncrna LOC102025931 uncharacterized LOC102025931 NW_004955508 6197605 6201892 - 102025931 AGCD01065917;GBDF01303522;XR_001231647 MODEL 8888481 protein-coding Pld6 phospholipase D family member 6 ENCODES a protein that exhibits cardiolipin phospholipase D activity (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN meiotic cell cycle (ortholog); mitochondrial fusion (ortholog); P granule organization (ortholog); PARTICIPATES IN mitochondria fusion pathway; ASSOCIATED WITH male infertility (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955577 698741 702977 + 102025634 AGCD01075411;AGCD01075412;GBCB01110589;XM_013509636 XP_013365090 MODEL 8817436 ncrna LOC102018823 uncharacterized LOC102018823 NW_004955472 1375543 1398861 - 102018823 AGCD01053390;GBDF01161710;XR_263542 MODEL 8726146 protein-coding Prdx5 peroxiredoxin 5 ENCODES a protein that exhibits antioxidant activity (ortholog); cysteine-type endopeptidase inhibitor activity involved in apoptotic process (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); hydrogen peroxide catabolic process (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH alopecia areata (ortholog); brucellosis (ortholog); Chronic Hepatitis C (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955422 20763822 20766976 - 102010595 AGCD01023086;GBCB01004546;XM_005384597 XP_005384654 MODEL 8758640 protein-coding Sec22c SEC22 homolog C, vesicle trafficking protein NW_004955420 28210912 28227015 + 102028198 AGCD01021472;AGCD01021473;GBCQ01013530;XM_005383543;XM_005383544;XM_013513579;XM_013513580 XP_005383600;XP_005383601;XP_013369033;XP_013369034 MODEL 8723191 protein-coding Prr5l proline rich 5 like ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); negative regulation of protein phosphorylation (ortholog); positive regulation of intracellular protein transport (ortholog); PARTICIPATES IN mTOR signaling pathway; FOUND IN TORC2 complex (ortholog) NW_004955422 9972588 10069411 - 102005481 AGCD01022726;AGCD01022727;AGCD01022728;AGCD01022729;AGCD01022730;GBDK01140964;XM_005384107;XM_005384108;XM_005384112;XM_005384114;XM_005384115;XM_005384116;XM_013514246;XM_013514247;XM_013514248;XM_013514249 XP_005384164;XP_005384165;XP_005384169;XP_005384171;XP_005384172;XP_005384173;XP_013369700;XP_013369701;XP_013369702;XP_013369703 MODEL 8795519 protein-coding LOC102010393 uncharacterized LOC102010393 NW_004955428 1963436 1974145 + 102010393 AGCD01027626;GBBH01018275;XM_005386840 XP_005386897 MODEL 10281946 ncrna LOC106147107 uncharacterized LOC106147107 NW_004955520 3406551 3408481 + 106147107 AGCD01068102;GBDI01198126;XR_001231865 MODEL 9068137 protein-coding Rfesd Rieske Fe-S domain containing NW_004955418 16897714 16900324 - 102015723 AGCD01019133;GBBH01113392;GBCB01057071;XM_013513067 XP_013368521 MODEL 9032743 protein-coding Rwdd1 RWD domain containing 1 ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN androgen receptor signaling pathway (ortholog); FOUND IN cytoplasm (ortholog) NW_004955526 94518 120421 - 102027449 AGCD01069210;AGCD01069211;AGCD01069212;GBDJ01131321;XM_005409748 XP_005409805 MODEL 8812233 pseudo LOC102019253 grpE protein homolog 2, mitochondrial pseudogene NW_004955460 9887916 9888533 - 102019253 AGCD01048560 MODEL 8814603 protein-coding Ripk4 receptor interacting serine/threonine kinase 4 ENCODES a protein that exhibits protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN intracellular signal transduction (ortholog); morphogenesis of an epithelium (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH Bartsocas-Papas Syndrome 1 (ortholog); Curly Hair-Ankyloblepharon-Nail Dysplasia Syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog) NW_004955407 39728645 39748752 + 102020205 AGCD01007835;GBBH01093656;XM_005375848;XM_005375849;XM_013505258 XP_005375905;XP_005375906;XP_013360712 MODEL 8756615 protein-coding Slc66a2 solute carrier family 66 member 2 NW_004955402 63035932 63073981 - 102027031 AGCD01001653;AGCD01001654;GBDJ01133639;XM_005373118;XM_005373119;XM_005373120;XM_013511651 XP_005373175;XP_005373176;XP_005373177;XP_013367105 MODEL 10343528 ncrna LOC106148207 uncharacterized LOC106148207 NW_004955417 24129893 24152395 + 106148207 AGCD01018453;GBDJ01358270;XR_001233443;XR_001233444 MODEL 9066282 protein-coding LOC102017670 zinc finger protein 709-like NW_004955421 8318637 8347417 - 102017670 AGCD01021806;AGCD01021807;GBDI01254648;XM_013513784;XM_013513785;XM_013513786;XM_013513787 XP_013369238;XP_013369239;XP_013369240;XP_013369241 MODEL 8813158 protein-coding Pym1 PYM1 exon junction complex associated factor ENCODES a protein that exhibits ribosome binding (ortholog); INVOLVED IN exon-exon junction complex disassembly (ortholog); nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); positive regulation of translation (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); exon-exon junction complex (ortholog) NW_004955458 3499217 3515108 - 102024190 AGCD01047310;AGCD01047311;AGCD01047312;AGCD01047313;AGCD01047314;GBBH01187590;GBDI01138449;XM_005397268 XP_005397325 MODEL 8717966 protein-coding Ppif peptidylprolyl isomerase F ENCODES a protein that exhibits cyclosporin A binding (ortholog); enzyme inhibitor activity (ortholog); peptide binding (ortholog); INVOLVED IN apoptotic mitochondrial changes (ortholog); apoptotic process (ortholog); cellular response to arsenic-containing substance (ortholog); ASSOCIATED WITH COVID-19 (ortholog); intestinal disease (ortholog); Ulcer (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrial permeability transition pore complex (ortholog) NW_004955437 13295766 13301918 - 102018024 AGCD01034655;GBCQ01093166;XM_005389888 XP_005389945 MODEL 9039309 protein-coding LOC102024500 vomeronasal type-2 receptor 116-like NW_004955524 669389 691978 + 102024500 AGCD01068689;AGCD01068690;AGCD01068691;XM_013507232 XP_013362686 MODEL 8730836 protein-coding Wdr3 WD repeat domain 3 INVOLVED IN ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH papillary thyroid carcinoma (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); small-subunit processome (ortholog) NW_004955435 21038053 21069213 + 102012798 AGCD01033468;GBCE01085305;XM_005389069;XM_005389070 XP_005389126;XP_005389127 MODEL 8953357 protein-coding LOC102030425 protein NipSnap homolog 3A NW_004955419 21713985 21725594 - 102030425 AGCD01020282;GBCC01021145;GBCE01024996;XM_005382784 XP_005382841 MODEL 8846200 protein-coding Thyn1 thymocyte nuclear protein 1 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Prostatic Neoplasms (ortholog); FOUND IN fibrillar center (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955412 35061874 35067631 - 102003426 AGCD01013397;GBDJ01191132;XM_005378596;XM_013511064;XM_013511065;XM_013511066;XM_013511067 XP_005378653;XP_013366518;XP_013366519;XP_013366520;XP_013366521 MODEL 8910318 ncrna LOC102008507 uncharacterized LOC102008507 NW_004955410 6953396 6959673 - 102008507 AGCD01010708;GBDF01017313;XR_259822 MODEL 8813197 protein-coding Rad54b RAD54 homolog B ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent activity, acting on DNA (ortholog); DNA translocase activity (ortholog); INVOLVED IN determination of adult lifespan (ortholog); DNA damage response (ortholog); double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH colon carcinoma (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); site of double-strand break (ortholog) NW_004955417 10598295 10685999 - 102026004 AGCD01018081;AGCD01018082;AGCD01018083;AGCD01018084;AGCD01018085;AGCD01018086;GBCQ01115191;XM_013512842 XP_013368296 MODEL 39133272 snrna U4 U4 spliceosomal RNA 8976681 ncrna LOC102003787 uncharacterized LOC102003787 NW_004955505 1073276 1075559 - 102003787 AGCD01064967;GBDF01042900;XR_264300 MODEL 8863835 ncrna LOC102005562 uncharacterized LOC102005562 NW_004955455 10714691 10715717 + 102005562 AGCD01045961;GBDJ01194372;XR_262853 MODEL 8735455 protein-coding Snx17 sorting nexin 17 ENCODES a protein that exhibits low-density lipoprotein particle receptor binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN aorta development (ortholog); cardiac septum development (ortholog); coronary vasculature development (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytoplasmic vesicle membrane (ortholog) NW_004955469 9334562 9340766 + 102029386 AGCD01052498;GBDI01076358;XM_005400489;XM_005400490 XP_005400546;XP_005400547 MODEL 8932351 ncrna LOC102011165 uncharacterized LOC102011165 NW_004955403 10472232 10477715 + 102011165 AGCD01001922;GBDF01249569;XR_259169 MODEL 8797768 ncrna LOC102015781 uncharacterized LOC102015781 NW_004955443 15377430 15386722 + 102015781 AGCD01038538;GBDF01225293;XR_262208 MODEL 626189190 snorna SNORA64 small nucleolar RNA, H/ACA box 64 8881253 pseudo LOC102010800 splicing regulatory glutamine/lysine-rich protein 1-like NW_004955479 4446160 4449021 - 102010800 AGCD01056323 MODEL 8819417 protein-coding Smg6 SMG6 nonsense mediated mRNA decay factor ENCODES a protein that exhibits DNA polymerase binding (ortholog); ribonucleoprotein complex binding (ortholog); RNA binding (ortholog); INVOLVED IN negative regulation of telomere capping (ortholog); nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); regulation of telomere maintenance (ortholog); ASSOCIATED WITH corpus callosum agenesis-abnormal genitalia syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); exon-exon junction complex (ortholog) NW_004955481 940041 1177998 + 102008849 AGCD01056818;AGCD01056819;AGCD01056820;AGCD01056821;AGCD01056822;AGCD01056823;AGCD01056824;AGCD01056825;AGCD01056826;GBCE01099102;XM_005402585;XM_005402586;XM_005402587;XM_013503361;XM_013503362 XP_005402642;XP_005402643;XP_005402644;XP_013358815;XP_013358816 MODEL 8763358 pseudo LOC102029003 ubiquitin-conjugating enzyme E2 D3 pseudogene NW_004955529 2541999 2542319 + 102029003 AGCD01069751;XM_005410095 MODEL 9045287 protein-coding Slc16a8 solute carrier family 16 member 8 ASSOCIATED WITH COVID-19 (ortholog); macular degeneration (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955413 24400621 24406754 - 102015095 AGCD01014364;AGCD01014365;AGCD01014366;GBBH01069709;GBCE01068470;XM_013511545 XP_013366999 MODEL 8988487 pseudo LOC102019256 R3H and coiled-coil domain-containing protein 1-like NW_004955413 632082 634543 - 102019256 AGCD01013482 MODEL 8762701 protein-coding Ptch1 patched 1 ENCODES a protein that exhibits cholesterol binding (ortholog); cyclin binding (ortholog); hedgehog family protein binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); brain development (ortholog); branching involved in ureteric bud morphogenesis (ortholog); PARTICIPATES IN glypican signaling pathway; Hedgehog signaling pathway; ASSOCIATED WITH Aberrant Crypt Foci (ortholog); anterior segment dysgenesis 5 (ortholog); Axenfeld-Rieger syndrome (ortholog); FOUND IN apical part of cell (ortholog); axonal growth cone (ortholog); caveola (ortholog) NW_004955422 22362330 22418062 - 102005945 AGCD01023158;GBCE01185669;GBDF01209723;XM_013514312 XP_013369766 MODEL 8750346 protein-coding LOC102009639 BBSome-interacting protein 1-like NW_004955430 6423139 6423588 - 102009639 AGCD01029292;GBCC01033208;XM_005387391;XM_013515616 XP_005387448;XP_013371070 MODEL 8736095 protein-coding Ripor1 RHO family interacting cell polarization regulator 1 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); INVOLVED IN cellular response to chemokine (ortholog); cellular response to starvation (ortholog); establishment of Golgi localization (ortholog); FOUND IN cell leading edge (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955484 9110208 9119678 - 102028755 AGCD01058406;GBDI01045086;XM_005403641 XP_005403698 MODEL 9022701 protein-coding LOC102006651 sulfotransferase 1C2 NW_004955470 11975224 11987943 + 102006651 AGCD01052916;AGCD01052917;GBCQ01000070;XM_005400797;XM_005400798;XM_005400799 XP_005400854;XP_005400855;XP_005400856 MODEL 8828720 protein-coding Rbm11 RNA binding motif protein 11 ENCODES a protein that exhibits poly(U) RNA binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 16071186 16082332 + 102006210 AGCD01007205;GBDF01252713;XM_005375561 XP_005375618 MODEL 8732839 ncrna LOC102007033 uncharacterized LOC102007033 NW_004955424 2197417 2203371 + 102007033 AGCD01024264;XR_001234174;XR_261035 MODEL 8958217 protein-coding Setd1a SET domain containing 1A, histone lysine methyltransferase ENCODES a protein that exhibits beta-catenin binding (ortholog); histone H3K4 methyltransferase activity (ortholog); histone H3K4 monomethyltransferase activity (ortholog); INVOLVED IN brain development (ortholog); positive regulation of gene expression (ortholog); positive regulation of neural precursor cell proliferation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Developmental Disease (ortholog); early-onset epilepsy 2 (ortholog); epilepsy (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955493 7808652 7834886 + 102020131 AGCD01061227;AGCD01061228;AGCD01061229;GBCB01061270;XM_013504748 XP_013360202 MODEL 9039003 ncrna LOC102011589 uncharacterized LOC102011589 NW_004955540 3450472 3456881 - 102011589 AGCD01071339;GBDF01209410;XR_001232117;XR_001232118;XR_264829 MODEL 9044833 protein-coding Enam enamelin ENCODES a protein that exhibits structural constituent of tooth enamel (ortholog); INVOLVED IN ameloblast differentiation (ortholog); amelogenesis (ortholog); odontogenesis of dentin-containing tooth (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 1B (ortholog); amelogenesis imperfecta type 1C (ortholog); FOUND IN extracellular matrix (ortholog) NW_004955447 2331251 2345459 - 102025189 AGCD01040538;JN414625;XM_013518491 AEP18526;XP_013373945 MODEL 8871840 protein-coding Prr7 proline rich 7, synaptic ENCODES a protein that exhibits long-chain fatty acid binding (ortholog); protein tyrosine kinase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN positive regulation of apoptotic process (ortholog); postsynapse to nucleus signaling pathway (ortholog); regulation of transcription by RNA polymerase I (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); neuron projection (ortholog) NW_004955408 29685254 29695113 + 102026192 AGCD01008766;GBBH01064463;XM_005376435;XM_013509844 XP_005376492;XP_013365298 MODEL 8804124 protein-coding Prdx6 peroxiredoxin 6 ENCODES a protein that exhibits 1-acylglycerophosphocholine O-acyltransferase activity (ortholog); A2-type glycerophospholipase activity (ortholog); glutathione peroxidase activity (ortholog); INVOLVED IN bleb assembly (ortholog); cellular oxidant detoxification (ortholog); glycerophospholipid catabolic process (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); arteriosclerosis (ortholog); chronic rhinosinusitis with nasal polyps (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lysosome (ortholog) NW_004955406 13717267 13728216 + 102005889 AGCD01005949;AGCD01005950;GBDK01014441;XM_005374867 XP_005374924 MODEL 8932382 ncrna LOC102012784 uncharacterized LOC102012784 NW_004955428 17863566 17878885 + 102012784 AGCD01028052;GBCQ01167239;XR_261304 MODEL 8755676 protein-coding Tpbgl trophoblast glycoprotein like NW_004955414 16580847 16583930 - 102015400 AGCD01015219;AGCD01015220;GBCE01168697;GBDF01122676;XM_013511705 XP_013367159 MODEL 9034745 protein-coding Plec plectin ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); ankyrin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); actomyosin contractile ring assembly actin filament organization (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular dysplasia 1 (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2Q (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); basal plasma membrane (ortholog) NW_004955454 2583138 2644308 - 102016445 AGCD01045025;AGCD01045026;GBCE01030252;XM_005395823;XM_005395824;XM_005395825;XM_005395826;XM_005395827;XM_005395828;XM_005395829;XM_005395830;XM_005395832;XM_013520104 XP_005395880;XP_005395881;XP_005395882;XP_005395883;XP_005395884;XP_005395885;XP_005395886;XP_005395887;XP_005395889;XP_013375558 MODEL 8859465 protein-coding Btaf1 B-TFIID TATA-box binding protein associated factor 1 ENCODES a protein that exhibits ATP-dependent activity, acting on DNA (ortholog); transcription coregulator activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955425 1239640 1350327 - 102014377 AGCD01025219;AGCD01025220;AGCD01025221;AGCD01025222;AGCD01025223;GBBH01149822;GBDK01319184;XM_013514876 XP_013370330 MODEL 8923267 protein-coding LOC102005563 chromosome unknown open reading frame, human C5orf52 NW_004955455 4906038 4911269 + 102005563 AGCD01045705;GBDF01215498;XM_013520307 XP_013375761 MODEL 8942629 protein-coding Pcare photoreceptor cilium actin regulator INVOLVED IN photoreceptor cell outer segment organization (ortholog); protein localization to photoreceptor outer segment (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN cilium (ortholog); photoreceptor inner segment (ortholog); photoreceptor outer segment (ortholog) NW_004955469 10919776 10930392 - 102017114 AGCD01052552;GBBH01049667;XM_005400541 XP_005400598 MODEL 8975743 pseudo LOC102024501 protein DBF4 homolog A-like NW_004955435 9744623 9748017 + 102024501 AGCD01033062;AGCD01033063 MODEL 8890797 protein-coding LOC102018824 NACHT, LRR and PYD domains-containing protein 10 NW_004955414 23795260 23797298 - 102018824 AGCD01015525;GBDF01034039;XM_013512059 XP_013367513 MODEL 8907428 pseudo LOC102026297 40S ribosomal protein S3 pseudogene NW_004955408 27420962 27427458 - 102026297 AGCD01008679 MODEL 8975578 protein-coding Trim66 tripartite motif containing 66 ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); FOUND IN chromocenter (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955414 24405986 24459729 - 102019264 AGCD01015545;AGCD01015546;GBDF01083727;XM_005380224;XM_013511881;XM_013511883;XM_013511884;XM_013511885;XM_013511886 XP_005380281;XP_013367335;XP_013367337;XP_013367338;XP_013367339;XP_013367340 MODEL 9013610 pseudo LOC102021752 histone acetyltransferase type B catalytic subunit pseudogene NW_004955471 1960041 1961237 - 102021752 AGCD01052994 MODEL 8939234 protein-coding Lin28b lin-28 RNA binding posttranscriptional regulator B ENCODES a protein that exhibits RNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN miRNA catabolic process (ortholog); negative regulation of pre-miRNA processing (ortholog); negative regulation of primary miRNA processing (ortholog); ASSOCIATED WITH disease of cellular proliferation (ortholog); Neoplastic Cell Transformation (ortholog); neuroblastoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955411 30381208 30499678 + 102029161 AGCD01012257;GBDF01020583;XM_013510789 XP_013366243 MODEL 8875735 protein-coding Sec23a SEC23 homolog A, COPII component ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN COPII-coated vesicle cargo loading (ortholog); endocytic recycling (ortholog); ASSOCIATED WITH craniolenticulosutural dysplasia (ortholog); osteoarthritis (ortholog); FOUND IN COPII vesicle coat (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); cytosol (ortholog) NW_004955409 22192549 22243090 + 102016984 AGCD01010029;AGCD01010030;AGCD01010031;AGCD01010032;GBCQ01097019;GBDJ01316545;XM_013510357 XP_013365811 MODEL 8819473 protein-coding Ptch2 patched 2 ENCODES a protein that exhibits hedgehog family protein binding (ortholog); hedgehog receptor activity (ortholog); smoothened binding (ortholog); INVOLVED IN cell fate determination (ortholog); epidermal cell fate specification (ortholog); epidermis development (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); Breast Cancer, Familial (ortholog); breast carcinoma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955464 13387844 13403991 + 102009156 AGCD01050274;AGCD01050275;GBDJ01143446;XM_005398741;XM_013521618;XM_013521619;XM_013521620;XM_013521621;XM_013521622;XM_013521623;XM_013521624;XM_013521625 XP_005398798;XP_013377072;XP_013377073;XP_013377074;XP_013377075;XP_013377076;XP_013377077;XP_013377078;XP_013377079 MODEL 8846915 pseudo LOC102027277 dual specificity protein kinase TTK pseudogene NW_004955462 4417058 4418351 - 102027277 AGCD01049225 MODEL 8802362 pseudo LOC102023508 olfactory receptor 5M10-like NW_004955511 1696693 1697564 + 102023508 AGCD01066377 MODEL 10379247 ncrna LOC106147108 uncharacterized LOC106147108 NW_004955520 2211707 2219585 - 106147108 AGCD01068077;GBCQ01188583;XR_001231866 MODEL 10383222 ncrna LOC106149951 uncharacterized LOC106149951 NW_004955458 13289765 13293713 - 106149951 AGCD01047796;GBDF01164666;XR_001236444 MODEL 8794086 protein-coding Rwdd2a RWD domain containing 2A NW_004955411 10925958 10929340 + 102013151 AGCD01011798;GBDK01364773;XM_005377687;XM_005377688;XM_013510759 XP_005377744;XP_005377745;XP_013366213 MODEL 8784600 protein-coding LOC102017677 olfactory receptor 18-like NW_004955495 442150 443091 - 102017677 AGCD01061630;XM_005405555 XP_005405612 MODEL 8881260 protein-coding LOC102011167 glycosyltransferase-like protein LARGE1 NW_004955650 55837 106695 - 102011167 AGCD01077795;AGCD01077796;AGCD01077797;AGCD01077798;AGCD01077799;GBDF01278631;GBDI01324495;XM_005415053 XP_005415110 MODEL 150537116 snorna SNORA65 small nucleolar RNA, H/ACA box 65 8836287 protein-coding Pdik1l PDLIM1 interacting kinase 1 like FOUND IN nucleoplasm (ortholog) NW_004955452 5571433 5577801 + 102012919 AGCD01044043;GBDF01280653;GBDI01279074;XM_005394842 XP_005394899 MODEL 9065673 protein-coding Ptchd1 patched domain containing 1 INVOLVED IN cognition (ortholog); smoothened signaling pathway (ortholog); social behavior (ortholog); ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN dendritic spine (ortholog); plasma membrane (ortholog) NW_004955509 3716086 3767541 + 102013108 AGCD01066032;AGCD01066033;GBCE01090342;XM_005407829 XP_005407886 MODEL 8978794 protein-coding Preb prolactin regulatory element binding ENCODES a protein that exhibits GTPase binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN COPII vesicle coating (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN endoplasmic reticulum exit site (ortholog); endoplasmic reticulum membrane (ortholog); nucleus (ortholog) NW_004955469 9097579 9101361 - 102020649 AGCD01052489;GBCQ01068510;XM_005400456;XM_005400457 XP_005400513;XP_005400514 MODEL 9038442 protein-coding Tpcn1 two pore segment channel 1 ENCODES a protein that exhibits identical protein binding (ortholog); intracellularly phosphatidylinositol-3,5-bisphosphate-gated monatomic cation channel activity (ortholog); ligand-gated sodium channel activity (ortholog); INVOLVED IN endocytosis involved in viral entry into host cell (ortholog); positive regulation of autophagy (ortholog); sodium ion transmembrane transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH oligospermia (ortholog); FOUND IN early endosome membrane (ortholog); endolysosome (ortholog); endosome membrane (ortholog) NW_004955482 9538572 9594739 + 102015201 AGCD01057574;GBBH01119361;XM_005403217;XM_005403218;XM_005403219;XM_005403220;XM_005403221;XM_005403222 XP_005403274;XP_005403275;XP_005403276;XP_005403277;XP_005403278;XP_005403279 MODEL 9040460 protein-coding Pyroxd1 pyridine nucleotide-disulphide oxidoreductase domain 1 ENCODES a protein that exhibits molecular sensor activity (ortholog); NAD(P)H oxidase H2O2-forming activity (ortholog); NADH dehydrogenase activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); tRNA exon ligation (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); sarcomere (ortholog) NW_004955413 17097859 17115148 + 102016905 AGCD01014129;GBDF01196381;XM_005379057 XP_005379114 MODEL 9064120 protein-coding Ppig peptidylprolyl isomerase G ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN nuclear matrix (ortholog); nuclear speck (ortholog) NW_004955449 4915747 4958456 - 102027130 AGCD01041902;AGCD01041903;GBBH01033225;XM_005393254;XM_005393255;XM_005393256 XP_005393311;XP_005393312;XP_005393313 MODEL 8968751 pseudo LOC102008511 transmembrane protein 14A pseudogene NW_004955464 11151367 11152100 - 102008511 AGCD01050137;XR_263212 MODEL 8740215 protein-coding LOC102028628 olfactory receptor 6K6 NW_004955468 10620094 10621096 + 102028628 AGCD01052093;XM_013522345 XP_013377799 MODEL 39133273 snrna U4 U4 spliceosomal RNA 8874397 pseudo LOC102006654 40S ribosomal protein SA-like NW_004955414 3111109 3159323 + 102006654 AGCD01014815;AGCD01014816 MODEL 9052013 pseudo LOC102010394 heterogeneous nuclear ribonucleoprotein K pseudogene NW_004955429 5495670 5504446 - 102010394 AGCD01028516;AGCD01028517 MODEL 8826414 protein-coding Ptchd3 patched domain containing 3 FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); sperm midpiece (ortholog) NW_004955476 11870822 11895903 - 102004160 AGCD01055475;GBDF01052329;XM_005401894 XP_005401951 MODEL 9038898 pseudo LOC102007037 polyprenol reductase-like NW_004955426 12589238 12590965 + 102007037 AGCD01026340 MODEL 8866976 protein-coding LOC102003791 olfactory receptor 5D18-like NW_004955511 564979 565959 - 102003791 AGCD01066333;XM_005408200 XP_005408257 MODEL 8863565 pseudo LOC102027970 chromobox protein homolog 3 pseudogene NW_004955415 11070658 11071186 + 102027970 AGCD01016146 MODEL 9004062 protein-coding LOC102018831 olfactory receptor 2T29-like NW_004955418 29690201 29788835 - 102018831 AGCD01019480;AGCD01019481;AGCD01019482;AGCD01019483;GBDJ01253002;XM_005382327;XR_001233550;XR_001233551;XR_001233552;XR_001233553;XR_001233554;XR_260594 XP_005382384 MODEL 8868943 protein-coding Snx18 sorting nexin 18 ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN cleavage furrow formation (ortholog); endocytosis (ortholog); endosomal transport (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasmic side of plasma membrane (ortholog); cytoplasmic vesicle (ortholog) NW_004955446 13043821 13067933 - 102014096 AGCD01040245;GBDJ01129277;XM_005392757 XP_005392814 MODEL 8752893 protein-coding Rffl ring finger and FYVE like domain containing E3 ubiquitin protein ligase ENCODES a protein that exhibits p53 binding (ortholog); protease binding (ortholog); protein kinase binding (ortholog); INVOLVED IN intracellular protein transport (ortholog); negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (ortholog); negative regulation of signal transduction by p53 class mediator (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH hypertension (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); endosome membrane (ortholog) NW_004955481 9718369 9788048 - 102008852 AGCD01057112;AGCD01057113;AGCD01057114;AGCD01057115;AGCD01057116;GBDF01089520;XM_005402854;XM_005402855;XM_005402858;XM_005402862 XP_005402911;XP_005402912;XP_005402915;XP_005402919 MODEL 8779963 pseudo LOC102011593 tripartite motif-containing protein 44 pseudogene NW_004955441 5319595 5320576 + 102011593 AGCD01036876 MODEL 8849987 ncrna LOC102015785 uncharacterized LOC102015785 NW_004955445 5422871 5426158 + 102015785 AGCD01039470;GBDF01074614;XR_001235565;XR_262304 MODEL 8790126 protein-coding Lin37 lin-37 DREAM MuvB core complex component ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN G0 to G1 transition (ortholog); gene expression (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955468 2799641 2803880 - 102021431 AGCD01051838;GBBH01119468;XM_005399965;XM_005399966;XM_005399968;XM_013522390;XM_013522391;XM_013522392 XP_005400022;XP_005400023;XP_005400025;XP_013377844;XP_013377845;XP_013377846 MODEL 8890396 protein-coding Prr9 proline rich 9 NW_004955592 208102 209795 - 102008166 AGCD01076301;XM_005414607 XP_005414664 MODEL 8946745 protein-coding LOC102025933 olfactory receptor 4C15-like NW_004955511 440386 441357 - 102025933 AGCD01066331;XM_005407944 XP_005408001 MODEL 10124275 ncrna LOC106148208 uncharacterized LOC106148208 NW_004955417 11380795 11383911 + 106148208 AGCD01018131;GBDF01040265;XR_001233447 MODEL 8757183 protein-coding LOC102027278 sodium-dependent glucose transporter 1A-like NW_004955411 35918450 35931807 + 102027278 AGCD01012458;GBCQ01004872;XM_013510861 XP_013366315 MODEL 8832126 pseudo LOC102005565 histone-binding protein RBBP4-B-like NW_004955407 19026615 19027887 - 102005565 AGCD01007294 MODEL 8896999 protein-coding Wdr31 WD repeat domain 31 NW_004955419 14150881 14168256 + 102024679 AGCD01020013;GBDF01067538;XM_005382681 XP_005382738 MODEL 10240862 ncrna LOC106149952 uncharacterized LOC106149952 NW_004955458 4169038 4171209 + 106149952 AGCD01047379;GBDI01045785;XR_001236445 MODEL 9055831 protein-coding LOC102019258 uncharacterized LOC102019258 NW_004955413 23007320 23038825 - 102019258 AGCD01014323;AGCD01014324;GBDK01319843;XM_013511689;XR_001233057;XR_001233058;XR_001233059;XR_001233060;XR_260095 XP_013367143 MODEL 8903454 protein-coding LOC102009640 olfactory receptor 10AG1-like NW_004955511 857241 858197 - 102009640 AGCD01066345;XM_013506363 XP_013361817 MODEL 8988216 protein-coding Tia1 TIA1 cytotoxic granule associated RNA binding protein ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); mRNA 3'-UTR binding (ortholog); RNA binding (ortholog); INVOLVED IN negative regulation of cytokine production (ortholog); negative regulation of translation (ortholog); positive regulation of epithelial cell apoptotic process (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 26 (ortholog); genetic disease (ortholog); spinal muscular atrophy with lower extremity predominant 2A (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955424 14887722 14920844 + 102006791 AGCD01024664;GBDF01163127;XM_005385618;XM_005385619;XM_005385620;XM_005385621;XM_005385622;XM_005385623;XM_013514641;XR_001234178 XP_005385675;XP_005385676;XP_005385677;XP_005385678;XP_005385679;XP_005385680;XP_013370095 MODEL 8810849 protein-coding Rad54l RAD54 like ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent activity, acting on DNA (ortholog); ATP-dependent DNA/DNA annealing activity (ortholog); INVOLVED IN chromosome organization (ortholog); determination of adult lifespan (ortholog); DNA damage response (ortholog); ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); breast ductal carcinoma (ortholog); FOUND IN nucleoplasm (ortholog); protein-containing complex (ortholog); site of double-strand break (ortholog) NW_004955464 11996512 12033525 - 102020542 AGCD01050170;AGCD01050171;AGCD01050172;AGCD01050173;GBDI01210773;XM_005398677;XM_005398678;XM_005398680 XP_005398734;XP_005398735;XP_005398737 MODEL 9030205 pseudo LOC102026300 protein MEMO1 pseudogene NW_004955462 2350852 2352569 + 102026300 AGCD01049165 MODEL 8971667 ncrna LOC102010804 uncharacterized LOC102010804 NW_004955417 3968290 4005083 + 102010804 AGCD01017933;AGCD01017934;GBCB01092654;XR_001233425;XR_001233426;XR_001233427;XR_001233428;XR_001233429 MODEL 8753328 protein-coding Setd1b SET domain containing 1B, histone lysine methyltransferase ENCODES a protein that exhibits histone H3K4 methyltransferase activity (ortholog); histone H3K4 monomethyltransferase activity (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN chromosome (ortholog); cytoplasm (ortholog); histone methyltransferase complex (ortholog) NW_004955482 6598176 6621944 - 102003135 AGCD01057403;AGCD01057404;AGCD01057405;AGCD01057406;GBCB01131998;GBDK01358092;XM_013503539 XP_013358993 MODEL 8841304 protein-coding Enc1 ectodermal-neural cortex 1 INVOLVED IN negative regulation of translation (ortholog); positive regulation of neuron projection development (ortholog); proteasomal ubiquitin-independent protein catabolic process (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN chromatin (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955425 26017684 26029262 + 102003987 AGCD01025940;GBDF01251229;XM_005386066 XP_005386123 MODEL 8775498 pseudo LOC102030426 chondroitin sulfate synthase 1-like NW_004955419 15507261 15511414 + 102030426 AGCD01020081;AGCD01020082 MODEL 8924684 protein-coding Smg7 SMG7 nonsense mediated mRNA decay factor ENCODES a protein that exhibits protein phosphatase 2A binding (ortholog); telomeric repeat DNA binding (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nonsense-mediated decay complex (ortholog) NW_004955406 22273298 22352782 + 102022666 AGCD01006155;AGCD01006156;AGCD01006157;GBBH01164038;XM_005375022;XM_005375023;XM_005375025;XM_005375026;XM_005375028 XP_005375079;XP_005375080;XP_005375082;XP_005375083;XP_005375085 MODEL 8724002 protein-coding Btbd1 BTB domain containing 1 ENCODES a protein that exhibits cullin family protein binding (ortholog); identical protein binding (ortholog); ASSOCIATED WITH Delayed Emergence from Anesthesia (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); cytosol (ortholog) NW_004955416 13621343 13657276 + 102011986 AGCD01017229;GBDF01004869;XM_013512487 XP_013367941 MODEL 8788500 protein-coding Slc16a9 solute carrier family 16 member 9 ENCODES a protein that exhibits carnitine transmembrane transporter activity (ortholog); creatine transmembrane transporter activity (ortholog); INVOLVED IN carnitine transmembrane transport (ortholog); creatine transmembrane transport (ortholog); urate metabolic process (ortholog); FOUND IN plasma membrane (ortholog) NW_004955425 13249903 13300705 - 102013521 AGCD01025529;GBCQ01010027;XM_005385930;XM_005385931;XM_005385932;XM_005385933;XM_013514881;XM_013514882 XP_005385987;XP_005385988;XP_005385989;XP_005385990;XP_013370335;XP_013370336 MODEL 8969024 protein-coding Rwdd2b RWD domain containing 2B NW_004955407 28363476 28371491 - 102024762 AGCD01007581;GBCB01076811;XM_005375609;XM_005375610;XM_005375611 XP_005375666;XP_005375667;XP_005375668 MODEL 8848104 protein-coding Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 ENCODES a protein that exhibits 4-alpha-hydroxytetrahydrobiopterin dehydratase activity (ortholog); identical protein binding (ortholog); phenylalanine 4-monooxygenase activity (ortholog); INVOLVED IN L-phenylalanine catabolic process (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); BH4-deficient hyperphenylalaninemia D (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955437 20482589 20487337 + 102008983 AGCD01034874;GBCE01054967;XM_005390042 XP_005390099 MODEL 8816792 protein-coding Rbm12b RNA binding motif protein 12B ASSOCIATED WITH myoepithelioma (ortholog) NW_004955417 10067672 10097381 - 102019913 AGCD01018065;AGCD01018066;GBDF01211556;XM_005381790;XM_005381796;XM_013512761;XM_013512762;XM_013512763;XM_013512764;XM_013512765;XM_013512766;XM_013512768;XM_013512769;XM_013512770;XM_013512771;XR_001233430;XR_001233431;XR_001233432 XP_005381847;XP_005381853;XP_013368215;XP_013368216;XP_013368217;XP_013368218;XP_013368219;XP_013368220;XP_013368222;XP_013368223;XP_013368224;XP_013368225 MODEL 8762388 pseudo LOC102021755 ras-related protein Rab-5A pseudogene NW_004955475 1653809 1654446 + 102021755 AGCD01054757 MODEL 8728581 protein-coding Prelid1 PRELI domain containing 1 ENCODES a protein that exhibits phosphatidic acid transfer activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of mitochondrial membrane potential (ortholog); negative regulation of release of cytochrome c from mitochondria (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrion (ortholog); protein-containing complex (ortholog) NW_004955408 29551253 29554778 + 102022363 AGCD01008762;GBDJ01010771;XM_005376421;XM_005376423 XP_005376478;XP_005376480 MODEL 8719062 protein-coding Slc66a3 solute carrier family 66 member 3 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Liver Neoplasms (ortholog) NW_004955487 5848723 5855425 + 102005382 AGCD01059348;GBCE01054645;XM_005404424 XP_005404481 MODEL 8984583 protein-coding Trim67 tripartite motif containing 67 INVOLVED IN negative regulation of Ras protein signal transduction (ortholog); positive regulation of neuron projection development (ortholog); positive regulation of ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog) NW_004955492 7538492 7578257 - 102009850 AGCD01060800;GBDI01166263;XM_005404980;XM_005404981;XM_013504687;XM_013504688 XP_005405037;XP_005405038;XP_013360141;XP_013360142 MODEL 8718973 pseudo LOC102028633 olfactory receptor 1E5-like NW_004955481 7646 8650 + 102028633 AGCD01056774 MODEL 8730422 pseudo LOC102023509 T-complex protein 1 subunit eta pseudogene NW_004955430 22329815 22331867 - 102023509 AGCD01029786 MODEL 8776978 protein-coding LOC102008514 putative olfactory receptor 2B8 NW_004955465 13513122 13518306 - 102008514 AGCD01050613;GBDF01256300;XM_005398955;XM_013521794;XM_013521795 XP_005399012;XP_013377248;XP_013377249 MODEL 8863296 protein-coding LOC102012785 histone H1x ENCODES a protein that exhibits structural constituent of chromatin (ortholog); INVOLVED IN chromosome condensation (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); COVID-19 (ortholog); lung adenocarcinoma (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955429 13671907 13673689 - 102012785 AGCD01028760;AGCD01028761;GBBH01032046;GBCE01001858;XM_005387002 XP_005387059 MODEL 10353890 ncrna LOC106147109 uncharacterized LOC106147109 NW_004955520 2697649 2699840 + 106147109 AGCD01068082;XR_001231867 MODEL 8828318 ncrna LOC102017678 uncharacterized LOC102017678 NW_004955423 6813818 6814536 - 102017678 AGCD01023587;GBDK01199497;XR_260958 MODEL 8902891 pseudo LOC102011168 telomeric repeat-binding factor 1 pseudogene NW_004957891 76 1145 - 102011168 AGCD01081287 MODEL 8921351 ncrna LOC102015791 uncharacterized LOC102015791 NW_004955449 10622348 10629138 - 102015791 AGCD01042072;GBDI01352231;XR_262496 MODEL 8757300 protein-coding Ripor2 RHO family interacting cell polarization regulator 2 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); cellular response to chemokine (ortholog); cellular response to mechanical stimulus (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 21 (ortholog); autosomal recessive nonsyndromic deafness 104 (ortholog); nonsyndromic deafness (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog) NW_004955483 2048236 2257078 + 102006249 AGCD01057666;AGCD01057667;AGCD01057668;AGCD01057669;AGCD01057670;AGCD01057671;GBCQ01033241;XM_005403354;XM_005403355;XM_005403356;XM_005403357;XM_013503808;XM_013503809 XP_005403411;XP_005403412;XP_005403413;XP_005403414;XP_013359262;XP_013359263 MODEL 8976573 pseudo LOC102027283 putative olfactory receptor 8G3 pseudogene NW_004955412 25005897 25013138 + 102027283 AGCD01013133 MODEL 8986275 protein-coding Pdilt protein disulfide isomerase like, testis expressed ENCODES a protein that exhibits protein disulfide isomerase activity (ortholog); protein folding chaperone (ortholog); INVOLVED IN cell migration (ortholog); spermatid development (ortholog) NW_004955442 4006525 4045037 - 102014087 AGCD01037517;GBDF01000360;XM_005391126 XP_005391183 MODEL 9061898 protein-coding LOC102025934 olfactory receptor 9Q1-like NW_004955511 2971725 2972660 + 102025934 AGCD01066437;XM_005408022 XP_005408079 MODEL 9032666 pseudo LOC102024503 probable ribosome biogenesis protein RLP24 pseudogene NW_004955534 1615395 1615936 - 102024503 AGCD01070504 MODEL 8740620 protein-coding Lin52 lin-52 DREAM MuvB core complex component NW_004955523 1250551 1344434 - 102022007 AGCD01068512;AGCD01068513;AGCD01068514;GBCB01055923;XM_005409403;XM_005409404;XM_005409405 XP_005409460;XP_005409461;XP_005409462 MODEL 8944149 protein-coding Wdr33 WD repeat domain 33 INVOLVED IN mRNA 3'-end processing (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; FOUND IN fibrillar center (ortholog); mRNA cleavage and polyadenylation specificity factor complex (ortholog); nucleoplasm (ortholog) NW_004955459 2740465 2841376 + 102022789 AGCD01048001;AGCD01048002;AGCD01048003;GBDF01081918;XM_005397576;XM_005397577;XM_005397580;XM_005397581;XM_005397582;XM_005397587;XM_005397588;XM_005397589;XM_013521041;XM_013521042;XM_013521044;XM_013521045;XM_013521046 XP_005397633;XP_005397634;XP_005397637;XP_005397638;XP_005397639;XP_005397644;XP_005397645;XP_005397646;XP_013376495;XP_013376496;XP_013376498;XP_013376499;XP_013376500 MODEL 8994578 protein-coding Tpcn2 two pore segment channel 2 ENCODES a protein that exhibits calcium channel activity (ortholog); identical protein binding (ortholog); intracellularly phosphatidylinositol-3,5-bisphosphate-gated monatomic cation channel activity (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); endocytosis involved in viral entry into host cell (ortholog); endosome to lysosome transport of low-density lipoprotein particle (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH brain infarction (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); Skin/Hair/Eye Pigmentation, Variation In, 10 (ortholog); FOUND IN endolysosome membrane (ortholog); endosome membrane (ortholog); late endosome membrane (ortholog) NW_004955422 16899730 16923962 - 102026124 AGCD01022904;GBDI01264096;XM_005384252;XM_013514134;XM_013514135;XM_013514136 XP_005384309;XP_013369588;XP_013369589;XP_013369590 MODEL 10207427 ncrna LOC106149953 uncharacterized LOC106149953 NW_004955458 276608 281685 - 106149953 AGCD01047116;GBDF01116207;XR_001236446;XR_001236447 MODEL 8927331 protein-coding Ppih peptidylprolyl isomerase H ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN positive regulation of viral genome replication (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); U4/U6 snRNP (ortholog) NW_004955537 2211566 2229444 + 102010198 AGCD01070919;GBDF01086103;XM_005410598 XP_005410655 MODEL 9000120 pseudo LOC102010397 forkhead box protein H1 pseudogene NW_004955431 1005823 1006729 - 102010397 AGCD01029888 MODEL 8892077 ncrna LOC102006656 uncharacterized LOC102006656 NW_004955415 5972499 5982441 - 102006656 AGCD01016005;GBDJ01024058;XR_260272 MODEL 8812611 ncrna LOC102007038 uncharacterized LOC102007038 NW_004955427 4191968 4222744 + 102007038 AGCD01026962;GBDF01207463;XR_261229 MODEL 8838828 pseudo LOC102003793 R-spondin-3 pseudogene NW_004955514 156613 206653 - 102003793 AGCD01066997;AGCD01066998;AGCD01066999;AGCD01067000;AGCD01067001 MODEL 8981138 protein-coding Plek pleckstrin ENCODES a protein that exhibits phosphatase activator activity (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cortical actin cytoskeleton organization (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); osteoporosis (ortholog); rheumatoid arthritis (ortholog); FOUND IN cytoplasm (ortholog); ruffle membrane (ortholog) NW_004955424 16494052 16524790 - 102022101 AGCD01024743;AGCD01024744;GBDK01147367;XM_005385668 XP_005385725 MODEL 8870419 ncrna LOC102011598 uncharacterized LOC102011598 NW_004955567 1211454 1212041 + 102011598 AGCD01074462;GBDF01038351;XR_265029 MODEL 8811239 ncrna LOC102010807 uncharacterized LOC102010807 NW_004955419 24809478 24811822 + 102010807 AGCD01020356;GBCE01047588;XR_001233558;XR_260656 MODEL 8731907 protein-coding LOC102026305 olfactory receptor 150-like NW_004955412 24966487 24967428 + 102026305 AGCD01013133;XM_005378644 XP_005378701 MODEL 8741885 protein-coding Snx19 sorting nexin 19 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN chondrocyte differentiation (ortholog); dense core granule maturation (ortholog); insulin secretion (ortholog); FOUND IN cytoplasm (ortholog); early endosome membrane (ortholog) NW_004955412 31747519 31791022 - 102024441 AGCD01013343;AGCD01013344;AGCD01013345;GBDK01128502;XM_005378570;XM_005378571;XM_005378572;XM_013511227 XP_005378627;XP_005378628;XP_005378629;XP_013366681 MODEL 8799909 ncrna LOC102012792 uncharacterized LOC102012792 NW_004955514 558603 620325 + 102012792 AGCD01067014;AGCD01067015;AGCD01067016;GBDF01088853;XR_001231784;XR_264491 MODEL 10234104 ncrna LOC106147110 uncharacterized LOC106147110 NW_004955520 2750271 2755313 - 106147110 AGCD01068082;XR_001231868 MODEL 8772672 protein-coding Smg8 SMG8 nonsense mediated mRNA decay factor INVOLVED IN nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); regulation of protein kinase activity (ortholog); ASSOCIATED WITH ALZAHRANI-KUWAHARA SYNDROME (ortholog); genetic disease (ortholog); FOUND IN serine/threonine protein kinase complex (ortholog) NW_004955451 3803325 3809055 - 102015796 AGCD01043073;GBDK01026975;XM_005393989;XM_005393990 XP_005394046;XP_005394047 MODEL 39133275 snrna U4 U4 spliceosomal RNA 8728363 protein-coding Pyroxd2 pyridine nucleotide-disulphide oxidoreductase domain 2 INVOLVED IN mitochondrion organization (ortholog); ASSOCIATED WITH Leigh disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955507 4384626 4407603 - 102012985 AGCD01065648;GBDK01322816;XM_005407661;XM_005407662;XM_005407663 XP_005407718;XP_005407719;XP_005407720 MODEL 8896653 protein-coding LOC102019261 taste receptor type 2 member 10-like NW_004955413 6981018 6981974 + 102019261 AGCD01013788;XM_005379615 XP_005379672 MODEL 8981012 protein-coding Btbd10 BTB domain containing 10 INVOLVED IN positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); FOUND IN cytoplasm (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955414 28748835 28809735 - 102017326 AGCD01015685;AGCD01015686;AGCD01015687;AGCD01015688;GBDJ01314884;XM_005380310;XM_005380311;XM_005380313 XP_005380367;XP_005380368;XP_005380370 MODEL 8763029 protein-coding Plek2 pleckstrin 2 ENCODES a protein that exhibits phosphatidylinositol-3,4-bisphosphate binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); erythrocyte enucleation (ortholog); positive regulation of cell projection organization (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog) NW_004955466 2818004 2836688 + 102016362 AGCD01050765;AGCD01050766;AGCD01050767;AGCD01050768;GBDF01147329;XM_005399083 XP_005399140 MODEL 8865108 protein-coding Sec23b SEC23 homolog B, COPII component ASSOCIATED WITH congenital dyserythropoietic anemia (ortholog); congenital dyserythropoietic anemia type II (ortholog); COVID-19 (ortholog); FOUND IN endomembrane system (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955415 27044694 27075028 + 102018087 AGCD01016622;GBDF01003507;XM_005380933;XM_013512232 XP_005380990;XP_013367686 MODEL 8920943 protein-coding Ptchd4 patched domain containing 4 NW_004955437 12253731 12423865 - 102014709 AGCD01034603;AGCD01034604;AGCD01034605;AGCD01034606;AGCD01034607;AGCD01034608;GBDF01162944;XM_005389880 XP_005389937 MODEL 8980172 protein-coding Rbm15 RNA binding motif protein 15 ENCODES a protein that exhibits mRNA binding (ortholog); RNA binding (ortholog); INVOLVED IN branching involved in blood vessel morphogenesis (ortholog); dosage compensation by inactivation of X chromosome (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH neuroblastoma (ortholog); FOUND IN nuclear envelope (ortholog); nuclear membrane (ortholog); nuclear speck (ortholog) NW_004955435 13846297 13854639 + 102018321 AGCD01033212;GBDF01234226;XM_005388923 XP_005388980 MODEL 8751504 protein-coding LOC102027972 angiotensin-converting enzyme NW_004955478 8299376 8319413 - 102027972 AGCD01056019;GBBH01002151;GBDK01017623;XM_013503242;XM_013503243 XP_013358696;XP_013358697 MODEL 8854976 protein-coding LOC102027285 histone H2A.J NW_004955413 11520479 11521163 + 102027285 AGCD01013964;GBCE01028514;XM_005378998 XP_005379055 MODEL 8701327 ncrna LOC102018834 uncharacterized LOC102018834 NW_004955485 1420370 1427704 - 102018834 AGCD01058479;GBCE01148220;XR_263904 MODEL 8925273 pseudo LOC102029004 eukaryotic translation initiation factor 5 pseudogene NW_004955436 9722535 9723885 - 102029004 AGCD01033765 MODEL 8809440 protein-coding Prelid2 PRELI domain containing 2 ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog) NW_004955415 8259707 8342179 + 102020658 AGCD01016070;AGCD01016071;AGCD01016072;AGCD01016073;GBDK01286329;XM_005380687 XP_005380744 MODEL 39133354 snorna SNORA66 Small nucleolar RNA SNORA66 8935752 protein-coding Slc67a1 solute carrier family 67 member 1 ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN xenobiotic detoxification by transmembrane export across the plasma membrane (ortholog); xenobiotic transport (ortholog); ASSOCIATED WITH breast adenocarcinoma (ortholog); breast cancer (ortholog); Breast Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); nuclear envelope (ortholog) NW_004955422 14590588 14615898 + 102010702 AGCD01022861;GBDJ01137383;XM_005384209;XM_005384210;XM_005384211;XM_005384212;XM_013514291 XP_005384266;XP_005384267;XP_005384268;XP_005384269;XP_013369745 MODEL 8999415 protein-coding Endod1 endonuclease domain containing 1 INVOLVED IN DNA repair (ortholog); double-strand break repair (ortholog); homologous recombination (ortholog); FOUND IN nucleus (ortholog) NW_004955412 61280 65352 + 102009816 AGCD01012480;GBDJ01177795;XM_013511207 XP_013366661 MODEL 10078141 ncrna LOC106148209 uncharacterized LOC106148209 NW_004955417 16254082 16260157 - 106148209 AGCD01018255;GBDI01313328;XR_001233448 MODEL 8718409 ncrna LOC102008515 uncharacterized LOC102008515 NW_004955412 14935574 14945274 - 102008515 AGCD01012863;GBCQ01079249;XR_259995 MODEL 8800201 protein-coding LOC102030429 5-hydroxytryptamine receptor 3C NW_004955420 23345040 23358458 - 102030429 AGCD01021244;AGCD01021245;GBDI01300656;XM_013513340 XP_013368794 MODEL 8912562 protein-coding Setd2 SET domain containing 2, histone lysine methyltransferase ENCODES a protein that exhibits alpha-tubulin binding (ortholog); histone H3K36 methyltransferase activity (ortholog); histone H3K36 trimethyltransferase activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell migration involved in vasculogenesis (ortholog); coronary vasculature morphogenesis (ortholog); PARTICIPATES IN histone modification pathway; renal cell carcinoma pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Agenesis of Corpus Callosum (ortholog); autism spectrum disorder (ortholog); FOUND IN chromosome (ortholog); nucleus (ortholog) NW_004955420 25070626 25178410 + 102005942 AGCD01021344;AGCD01021345;AGCD01021346;GBDF01080632;GBDF01080633;XM_013513427 XP_013368881 MODEL 8969991 protein-coding LOC102007039 chromosome unknown open reading frame, human C4orf51 NW_004955428 1503025 1543635 + 102007039 AGCD01027613;AGCD01027614;GBDF01008625;XM_005386650;XM_005386651;XM_005386652 XP_005386707;XP_005386708;XP_005386709 MODEL 9019891 pseudo LOC102011172 translationally-controlled tumor protein pseudogene NW_004955405 31816779 31817304 - 102011172 AGCD01005306;XM_005374671 MODEL 8809835 ncrna LOC102011599 uncharacterized LOC102011599 NW_004955448 16625313 16631092 + 102011599 AGCD01041700;GBDF01305679;XR_001235757;XR_262473 MODEL 8856318 protein-coding Rwdd3 RWD domain containing 3 INVOLVED IN positive regulation of hypoxia-inducible factor-1alpha signaling pathway (ortholog); positive regulation of protein sumoylation (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955435 398707 412476 + 102019947 AGCD01032725;AGCD01032726;GBCQ01096523;XM_005388762;XM_013516467 XP_005388819;XP_013371921 MODEL 8880910 protein-coding Pcbd2 pterin-4 alpha-carbinolamine dehydratase 2 ENCODES a protein that exhibits identical protein binding (ortholog); phenylalanine 4-monooxygenase activity (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrion (ortholog); nucleus (ortholog) NW_004955408 30090808 30137894 + 102028938 AGCD01008796;AGCD01008797;AGCD01008798;GBCE01097464;GBCQ01095927;XM_013506992;XM_013506994 XP_013362446;XP_013362448 MODEL 8735330 ncrna LOC102024506 uncharacterized LOC102024506 NW_004955540 1866085 1875395 - 102024506 AGCD01071308;GBCE01172657;XR_264820 MODEL 9064744 protein-coding Rad54l2 RAD54 like 2 ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); DNA/RNA helicase activity (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); R-loop processing (ortholog); transcription elongation by RNA polymerase II (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); nuclear speck (ortholog) NW_004955532 3177655 3271683 + 102017811 AGCD01070270;AGCD01070271;AGCD01070272;AGCD01070273;AGCD01070274;AGCD01070275;GBDF01252419;XM_005410317;XM_005410318 XP_005410374;XP_005410375 MODEL 8989982 protein-coding Tpd52 tumor protein D52 ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN B cell differentiation (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH Neoplasm Recurrence, Local (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); glutamatergic synapse (ortholog) NW_004955444 1230730 1261839 + 102011058 AGCD01038717;AGCD01038718;GBDF01082643;XM_005392060;XM_005392062;XM_005392063;XM_013518179 XP_005392117;XP_005392119;XP_005392120;XP_013373633 MODEL 8814779 protein-coding Rfk riboflavin kinase ENCODES a protein that exhibits riboflavin kinase activity (ortholog); INVOLVED IN apoptotic process (ortholog); positive regulation of NAD(P)H oxidase activity (ortholog); reactive oxygen species metabolic process (ortholog); PARTICIPATES IN riboflavin metabolic pathway; ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); mitochondrion (ortholog) NW_004955512 2889265 2898195 + 102029315 AGCD01066691;AGCD01066692;GBBH01065333;GBDF01001741;XM_005408308 XP_005408365 MODEL 8744623 protein-coding Prrc1 proline rich coiled-coil 1 ENCODES a protein that exhibits identical protein binding (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955415 580812 606126 + 102030064 AGCD01015845;AGCD01015846;GBCQ01129160;GBDF01189940;XM_005380545 XP_005380602 MODEL 8815817 protein-coding Sec23ip SEC23 interacting protein INVOLVED IN acrosome assembly (ortholog); single fertilization (ortholog); spermatid development (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum exit site (ortholog); perinuclear endoplasmic reticulum (ortholog) NW_004955551 695026 746359 + 102013972 AGCD01072669;AGCD01072670;AGCD01072671;AGCD01072672;AGCD01072673;GBDF01088113;XM_005412171;XM_013508588 XP_005412228;XP_013364042 MODEL 8948582 pseudo LOC102005569 UDP-N-acetylhexosamine pyrophosphorylase pseudogene NW_004955458 8136442 8138154 - 102005569 AGCD01047600 MODEL 8944727 ncrna LOC102015792 uncharacterized LOC102015792 NW_004955588 264857 272070 + 102015792 AGCD01076099;AGCD01076100;GBCB01027579;XR_265117 MODEL 8927970 protein-coding Prelid3a PRELI domain containing 3A ENCODES a protein that exhibits phosphatidic acid transfer activity (ortholog); INVOLVED IN phospholipid transport (ortholog); FOUND IN mitochondrion (ortholog) NW_004955402 1016977 1027063 - 102011158 AGCD01000042;AGCD01000043;AGCD01000044;GBCE01013503;XM_005372561;XM_005372562;XM_013513802;XR_259007;XR_259008;XR_259009 XP_005372618;XP_005372619;XP_013369256 MODEL 8718522 ncrna LOC102012794 uncharacterized LOC102012794 NW_004955515 468692 476022 + 102012794 AGCD01067199;GBDF01281122;XR_264518 MODEL 9010709 protein-coding LOC102025936 olfactory receptor 4C11-like NW_004955511 245457 275350 + 102025936 AGCD01066325;AGCD01066326;GBCE01094201;XM_013506351 XP_013361805 MODEL 8827000 protein-coding Slc17a1 solute carrier family 17 member 1 ENCODES a protein that exhibits sodium:phosphate symporter activity (ortholog); INVOLVED IN sodium-dependent phosphate transport (ortholog); urate metabolic process (ortholog); urate transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955483 1269153 1296329 + 102029082 AGCD01057645;GBDF01022721;XM_005403339;XM_005403340;XM_005403341;XM_013503757 XP_005403396;XP_005403397;XP_005403398;XP_013359211 MODEL 39133277 snrna U4 U4 spliceosomal RNA 8802036 protein-coding Snx2 sorting nexin 2 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); identical protein binding (ortholog); insulin receptor binding (ortholog); INVOLVED IN lamellipodium morphogenesis (ortholog); retrograde transport, endosome to Golgi (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); endosome membrane (ortholog) NW_004955521 870469 934112 + 102009868 AGCD01068154;AGCD01068155;AGCD01068156;AGCD01068157;AGCD01068158;AGCD01068159;AGCD01068160;AGCD01068161;GBCE01029530;XM_005409303 XP_005409360 MODEL 8763414 protein-coding Lin54 lin-54 DREAM MuvB core complex component ENCODES a protein that exhibits minor groove of adenine-thymine-rich DNA binding (ortholog); transcription regulatory region nucleic acid binding (ortholog); INVOLVED IN nucleosome organization (ortholog); FOUND IN RNA polymerase II transcription repressor complex (ortholog) NW_004955474 6600766 6660904 + 102003017 AGCD01054482;AGCD01054483;GBBH01221828;GBDF01220818;XM_005401388;XM_005401389 XP_005401445;XP_005401446 MODEL 10283854 protein-coding LOC106147111 uncharacterized LOC106147111 NW_004955520 2113587 2140566 + 106147111 AGCD01068076;XM_013507019 XP_013362473 MODEL 10140019 protein-coding LOC106149954 translation initiation factor IF-2-like NW_004955458 329439 331047 - 106149954 AGCD01047119;GBBH01141876;GBDK01081827;XM_013520875 XP_013376329 MODEL 8787087 protein-coding LOC102010401 carboxylesterase 1D-like NW_004955433 13332713 13350578 - 102010401 AGCD01031684;AGCD01031685;XM_013516104 XP_013371558 MODEL 8741944 pseudo LOC102028634 THO complex subunit 4 pseudogene NW_004955418 16244601 16248925 - 102028634 AGCD01019122 MODEL 9068179 protein-coding Btbd16 BTB domain containing 16 ASSOCIATED WITH prostate cancer (ortholog) NW_004955477 560095 627017 + 102019167 AGCD01055492;GBDF01047392;XM_005401934;XM_013503026;XM_013503027 XP_005401991;XP_013358480;XP_013358481 MODEL 8953998 protein-coding LOC102023511 lipocalin-1-like NW_004955513 2617713 2622926 - 102023511 AGCD01066883;GBBH01106908;XM_013506592 XP_013362046 MODEL 8842262 protein-coding Pyurf PIGY upstream open reading frame INVOLVED IN protein stabilization (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); mitochondrion (ortholog) NW_004955474 11944579 11945906 + 102008310 AGCD01054643;GBCE01000203;XM_013523090 XP_013378544 MODEL 8999932 protein-coding Trim69 tripartite motif containing 69 ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN positive regulation of cGAS/STING signaling pathway (ortholog); protein K63-linked ubiquitination (ortholog); protein localization to centrosome (ortholog); ASSOCIATED WITH multisystem inflammatory syndrome in children (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nuclear speck (ortholog) NW_004955409 8376449 8394651 - 102024980 AGCD01009402;AGCD01009403;AGCD01009404;AGCD01009405;AGCD01009406;GBDF01053402;XM_005376746 XP_005376803 MODEL 8943133 pseudo LOC102027974 DNA (cytosine-5)-methyltransferase 3A pseudogene NW_004955416 13965327 13972133 - 102027974 AGCD01017241 MODEL 8767931 protein-coding Plekha1 pleckstrin homology domain containing A1 ENCODES a protein that exhibits PDZ domain binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); INVOLVED IN androgen metabolic process (ortholog); B cell receptor signaling pathway (ortholog); cellular response to hydrogen peroxide (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955477 659640 730394 + 102020112 AGCD01055492;AGCD01055493;AGCD01055494;GBDF01226547;XM_005401937;XM_005401939;XM_005401940;XM_005401941;XM_005401942;XM_005401943;XM_005401945;XM_013503083;XM_013503084 XP_005401994;XP_005401996;XP_005401997;XP_005401998;XP_005401999;XP_005402000;XP_005402002;XP_013358537;XP_013358538 MODEL 8966364 ncrna LOC102029010 uncharacterized LOC102029010 NW_004955442 2332695 2345429 - 102029010 AGCD01037463;GBDF01279443;XR_001235372;XR_262106 MODEL 8945117 pseudo LOC102009643 tubulin alpha-1C chain-like NW_004955515 4374447 4376136 + 102009643 AGCD01067319 MODEL 8706553 protein-coding Tial1 TIA1 cytotoxic granule associated RNA binding protein like 1 ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); mRNA 3'-UTR binding (ortholog); protein-RNA adaptor activity (ortholog); INVOLVED IN germ cell development (ortholog); negative regulation of cell population proliferation (ortholog); positive regulation of cell population proliferation (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Disease Progression (ortholog); Experimental Liver Cirrhosis (ortholog); malignant astrocytoma (ortholog); FOUND IN cytolytic granule (ortholog); cytoplasm (ortholog); cytoplasmic stress granule (ortholog) NW_004955551 370792 395836 - 102010637 AGCD01072655;GBCQ01042559;XM_005412159;XM_005412160;XM_013508586;XM_013508587 XP_005412216;XP_005412217;XP_013364040;XP_013364041 MODEL 8918265 protein-coding Prrc2a proline rich coiled-coil 2A ASSOCIATED WITH Transplant Rejection (ortholog); type 1 diabetes mellitus (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955437 161618 176225 + 102014284 AGCD01034107;AGCD01034108;GBDF01226148;XM_005389330;XR_261814 XP_005389387 MODEL 8774162 protein-coding Endog endonuclease G ENCODES a protein that exhibits DNA endonuclease activity (ortholog); DNA nuclease activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN apoptotic DNA fragmentation (ortholog); cellular response to calcium ion (ortholog); cellular response to glucose stimulus (ortholog); ASSOCIATED WITH brain ischemia (ortholog); Chemical and Drug Induced Liver Injury (ortholog); congestive heart failure (ortholog); FOUND IN mitochondrion (ortholog); perikaryon (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955570 1200461 1203566 + 102025406 AGCD01074798;AGCD01074799;GBBH01228917;XM_005413641 XP_005413698 MODEL 9064039 protein-coding LOC102021758 tubulin polyglutamylase TTLL13 NW_004955416 15080728 15102506 - 102021758 AGCD01017299;AGCD01017300;GBDI01167579;XM_005381529;XM_013512473;XM_013512474 XP_005381586;XP_013367927;XP_013367928 MODEL 8740776 protein-coding LOC102026309 olfactory receptor 10K1 NW_004955468 10334326 10335267 + 102026309 AGCD01052076;XM_005400152 XP_005400209 MODEL 8742636 protein-coding Setd3 SET domain containing 3, actin N3(tau)-histidine methyltransferase ENCODES a protein that exhibits histone H3K36 methyltransferase activity (ortholog); histone H3K4 methyltransferase activity (ortholog); protein-L-histidine N-tele-methyltransferase activity (ortholog); INVOLVED IN actin filament organization (ortholog); positive regulation of muscle cell differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955438 20754593 20826570 - 102028681 AGCD01035521;AGCD01035522;AGCD01035523;GBDF01008952;XM_005390415;XM_005390417 XP_005390472;XP_005390474 MODEL 8929377 protein-coding Wdr35 WD repeat domain 35 ENCODES a protein that exhibits protein carrier activity (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to leukemia inhibitory factor (ortholog); cellular response to tumor necrosis factor (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); connective tissue disease (ortholog); cranioectodermal dysplasia (ortholog); FOUND IN axoneme (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955469 2484972 2546562 - 102011643 AGCD01052277;GBBH01005246;XM_005400340 XP_005400397 MODEL 8741107 protein-coding LOC102019266 translation initiation factor IF-2-like NW_004955414 19651075 19652661 + 102019266 AGCD01015327;GBCB01111580;GBDK01347780;XM_013511755 XP_013367209 MODEL 8834985 protein-coding Ppil1 peptidylprolyl isomerase like 1 ENCODES a protein that exhibits disordered domain specific binding (ortholog); peptidyl-prolyl cis-trans isomerase activity (ortholog); INVOLVED IN embryonic brain development (ortholog); mRNA splicing, via spliceosome (ortholog); protein peptidyl-prolyl isomerization (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH genetic disease (ortholog); microcephaly (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955437 6131013 6143474 + 102024382 AGCD01034418;AGCD01034419;AGCD01034420;GBBH01121509;XM_005389635 XP_005389692 MODEL 8893947 protein-coding Rbm15b RNA binding motif protein 15B ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN dosage compensation by inactivation of X chromosome (ortholog); mRNA export from nucleus (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN nuclear envelope (ortholog); nuclear speck (ortholog); nucleolus (ortholog) NW_004955532 3080207 3082312 + 102017499 AGCD01070267;GBBH01230101;XM_005410316 XP_005410373 MODEL 39133280 snrna U4 U4 spliceosomal RNA 8934344 protein-coding Ptcra pre T cell antigen receptor alpha INVOLVED IN alpha-beta T cell differentiation (ortholog); negative regulation of thymocyte apoptotic process (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH Immunodeficiency 126 (ortholog); polycystic ovary syndrome (ortholog); Zellweger syndrome (ortholog); FOUND IN plasma membrane (ortholog) NW_004955437 8920997 8927354 + 102025508 AGCD01034507;GBCQ01091734;XM_005389728;XM_005389729;XM_005389730;XM_005389731;XM_005389732;XM_013516772 XP_005389785;XP_005389786;XP_005389787;XP_005389788;XP_005389789;XP_013372226 MODEL 8699697 pseudo LOC102010809 protein FAM161A pseudogene NW_004955419 28597487 28599260 - 102010809 AGCD01020469 MODEL 8931047 protein-coding Rflnb refilin B ENCODES a protein that exhibits filamin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament bundle organization (ortholog); epithelial to mesenchymal transition (ortholog); ASSOCIATED WITH cholestasis (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament bundle (ortholog) NW_004955481 2102576 2107947 - 102006457 AGCD01056866;GBCB01008384;GBDK01281227;XM_013503522 XP_013358976 MODEL 8724624 protein-coding LOC102008516 epididymal secretory glutathione peroxidase NW_004955465 13787944 13795076 + 102008516 AGCD01050624;AGCD01050625;XM_005399016 XP_005399073 MODEL 8795598 protein-coding Pdk1 pyruvate dehydrogenase kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); protein kinase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); cell surface receptor signaling pathway (ortholog); hypoxia-inducible factor-1alpha signaling pathway (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; Fc epsilon receptor mediated signaling pathway; pyruvate metabolic pathway; FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); plasma membrane (ortholog) NW_004955449 2546790 2582402 - 102013461 AGCD01041829;AGCD01041830;GBDF01054828;XM_005393209;XM_005393210;XM_005393211;XM_005393212;XM_005393213 XP_005393266;XP_005393267;XP_005393268;XP_005393269;XP_005393270 MODEL 8948880 protein-coding Smg9 SMG9 nonsense mediated mRNA decay factor ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN brain development (ortholog); eye development (ortholog); heart development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN serine/threonine protein kinase complex (ortholog) NW_004955555 1463031 1481411 - 102020493 AGCD01073082;GBDK01196575;XM_005412456;XM_005412457;XM_005412458 XP_005412513;XP_005412514;XP_005412515 MODEL 8845315 protein-coding Ripor3 RIPOR family member 3 ASSOCIATED WITH prostate cancer (ortholog) NW_004955445 7685898 7753370 + 102025299 AGCD01039550;AGCD01039551;GBCQ01098176;XM_005392313;XM_013518352;XM_013518353;XM_013518354;XM_013518355;XM_013518356 XP_005392370;XP_013373806;XP_013373807;XP_013373808;XP_013373809;XP_013373810 MODEL 8928053 protein-coding LOC102015798 DNA repair protein complementing XP-C cells-like NW_004956269 283 3940 + 102015798 AGCD01079352;XM_005415188 XP_005415245 MODEL 8799028 protein-coding Qars1 glutaminyl-tRNA synthetase 1 ENCODES a protein that exhibits glutamine-tRNA ligase activity (ortholog); protein kinase binding (ortholog); protein kinase inhibitor activity (ortholog); INVOLVED IN brain development (ortholog); glutaminyl-tRNA aminoacylation (ortholog); negative regulation of apoptotic signaling pathway (ortholog); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; glutamic acid/glutamate metabolic pathway; homocarnosinosis pathway; ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); autosomal dominant intellectual developmental disorder 43 (ortholog); epilepsy (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955532 1093444 1100591 - 102008659 AGCD01070165;GBDF01001584;XM_005410187 XP_005410244 MODEL 8781360 ncrna LOC102011604 uncharacterized LOC102011604 NW_004955592 442424 444289 + 102011604 AGCD01076315;GBDF01289807;XR_265137 MODEL 8995749 protein-coding LOC102012796 vomeronasal type-2 receptor 116-like NW_004955524 3477585 3506250 - 102012796 AGCD01068903;AGCD01068904;AGCD01068905;GBDJ01017969;XM_013507196 XP_013362650 MODEL 8946332 pseudo LOC102006657 anion exchange transporter-like NW_004955474 8327235 8329031 - 102006657 AGCD01054549 MODEL 9049919 protein-coding Prelid3b PRELI domain containing 3B ENCODES a protein that exhibits phosphatidylserine transfer activity (ortholog); INVOLVED IN intermembrane phospholipid transfer (ortholog); mitochondrial membrane organization (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955445 552634 563324 + 102017610 AGCD01039319;GBDF01054211;XM_005392207;XM_005392208;XM_005392209 XP_005392264;XP_005392265;XP_005392266 MODEL 8742122 protein-coding Rwdd4 RWD domain containing 4 NW_004955403 25211506 25229830 + 102009136 AGCD01002283;AGCD01002284;AGCD01002285;GBDF01153464;XM_005373501;XM_005373502;XM_013513123;XM_013513131 XP_005373558;XP_005373559;XP_013368577;XP_013368585 MODEL 8938032 ncrna LOC102003796 uncharacterized LOC102003796 NW_004955433 12458790 12516903 - 102003796 AGCD01031664;GBBH01126520;XR_001234747;XR_001234748;XR_001234749;XR_001234750;XR_001234751;XR_001234752;XR_261587 MODEL 9026956 pseudo LOC102017679 60S ribosomal protein L26 pseudogene NW_004955423 7248916 7249482 + 102017679 AGCD01023595 MODEL 9008055 protein-coding LOC102021762 uncharacterized LOC102021762 NW_004955417 27505855 27508890 + 102021762 AGCD01018558;GBDF01146423;XM_005381948;XM_005381949;XM_005381950 XP_005382005;XP_005382006;XP_005382007 MODEL 8901604 protein-coding Slc17a2 solute carrier family 17 member 2 ENCODES a protein that exhibits urate transmembrane transporter activity (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); liver cirrhosis (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955483 1185775 1201851 + 102027187 AGCD01057644;XM_005403332;XM_005403333;XM_005403334 XP_005403389;XP_005403390;XP_005403391 MODEL 8987107 protein-coding Snx20 sorting nexin 20 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); FOUND IN early endosome membrane (ortholog) NW_004955433 8725950 8734699 - 102016508 AGCD01031602;GBDJ01170428;XM_005388271 XP_005388328 MODEL 39133357 snorna SNORA66 Small nucleolar RNA SNORA66 8996910 protein-coding Tpd52l1 TPD52 like 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN G2/M transition of mitotic cell cycle (ortholog); positive regulation of apoptotic signaling pathway (ortholog); positive regulation of JNK cascade (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955436 6648140 6672474 + 102027674 AGCD01033691;GBCE01154531;GBDI01175773;XM_013516685 XP_013372139 MODEL 8750159 protein-coding Slc67a2 solute carrier family 67 member 2 NW_004955470 8144065 8164515 - 102030519 AGCD01052819;AGCD01052820;GBBH01155399;GBDJ01214123;XM_013522697 XP_013378151 MODEL 8893386 pseudo LOC102028638 uncharacterized protein C12orf40 pseudogene NW_004955484 2451549 2456059 - 102028638 AGCD01058116 MODEL 10281971 ncrna LOC106148210 uncharacterized LOC106148210 NW_004955417 10812766 10813824 - 106148210 AGCD01018096;GBDK01059227;XR_001233449 MODEL 8894312 ncrna LOC102030430 uncharacterized LOC102030430 NW_004955421 3704981 3706854 + 102030430 AGCD01021665;GBDF01280510;XR_001233864;XR_001233865 MODEL 9023985 pseudo LOC102007040 olfactory receptor 13A1-like NW_004955507 6432557 6457489 + 102007040 AGCD01065716;AGCD01065717 MODEL 8870362 protein-coding LOC102011176 keratin-associated protein 20-2-like NW_004955407 30259322 30259501 + 102011176 AGCD01007630;XM_005375653 XP_005375710 MODEL 8704213 ncrna LOC102027976 uncharacterized LOC102027976 NW_004955417 29729033 29734861 - 102027976 AGCD01018606;GBDJ01063877;XR_260516;XR_260517 MODEL 8977769 protein-coding Sec24a SEC24 homolog A, COPII component ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); COPII-coated vesicle cargo loading (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH progressive muscular atrophy (ortholog); FOUND IN COPII vesicle coat (ortholog) NW_004955408 5803438 5850879 + 102017201 AGCD01008156;AGCD01008157;AGCD01008158;GBBH01206501;GBCQ01127382;XM_013508549 XP_013364003 MODEL 8908039 protein-coding Plekha2 pleckstrin homology domain containing A2 ENCODES a protein that exhibits fibronectin binding (ortholog); laminin binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN positive regulation of cell-matrix adhesion (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; FOUND IN cytoplasm (ortholog); membrane (ortholog); protein-containing complex (ortholog) NW_004955463 14462875 14525174 + 102027500 AGCD01049910;AGCD01049911;GBCE01011414;XM_005398458;XM_005398460;XM_005398461;XM_013521516;XM_013521517 XP_005398515;XP_005398517;XP_005398518;XP_013376970;XP_013376971 MODEL 8834197 protein-coding Slc17a3 solute carrier family 17 member 3 ENCODES a protein that exhibits efflux transmembrane transporter activity (ortholog); toxin transmembrane transporter activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN transmembrane transport (ortholog); urate metabolic process (ortholog); urate transport (ortholog); ASSOCIATED WITH gout (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955483 1235122 1260161 + 102028541 AGCD01057644;GBCQ01036124;XM_005403337;XM_005403338 XP_005403394;XP_005403395 MODEL 8889320 pseudo LOC102024507 kinesin-associated protein 3-like NW_004955437 19627016 19630188 + 102024507 AGCD01034861 MODEL 8859781 ncrna LOC102025939 uncharacterized LOC102025939 NW_004955435 1521893 1545539 - 102025939 AGCD01032748;GBCE01014488;XR_001234909;XR_001234910;XR_001234911;XR_001234912 MODEL 8758420 pseudo LOC102018835 transcription elongation factor B polypeptide 2-like NW_004955487 5499289 5500133 - 102018835 AGCD01059338 MODEL 8925029 pseudo LOC102015799 E3 ubiquitin-protein ligase RNF13 pseudogene NW_004955403 46343655 46345148 - 102015799 AGCD01002856 MODEL 10394534 ncrna LOC106149955 uncharacterized LOC106149955 NW_004955458 5199214 5213527 + 106149955 AGCD01047467;AGCD01047468;AGCD01047469;GBCE01149790;XR_001236448 MODEL 9036362 pseudo LOC102023513 intraflagellar transport protein 52 homolog pseudogene NW_004955432 3741438 3742765 + 102023513 AGCD01030676 MODEL 8737061 protein-coding Setd4 SET domain containing 4 ENCODES a protein that exhibits histone H3K4 methyltransferase activity (ortholog); histone H4K20 methyltransferase activity (ortholog); histone H4K20 monomethyltransferase activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); positive regulation of inflammatory response (ortholog); positive regulation of interleukin-6 production (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955407 35215247 35239488 - 102004560 AGCD01007732;AGCD01007733;GBCE01108284;XM_005375712;XM_005375720;XM_013504516;XM_013504518;XM_013504520;XM_013504521;XM_013504526;XM_013504535;XM_013504538 XP_005375769;XP_005375777;XP_013359970;XP_013359972;XP_013359974;XP_013359975;XP_013359980;XP_013359989;XP_013359992 MODEL 8852583 protein-coding Btbd17 BTB domain containing 17 NW_004955553 1247702 1271777 - 102008771 AGCD01072873;AGCD01072874;AGCD01072875;AGCD01072876;GBCB01111017;XM_005412235;XM_013508637;XM_013508638 XP_005412292;XP_013364091;XP_013364092 MODEL 9044198 pseudo LOC102029014 myelin expression factor 2 pseudogene NW_004955442 17499797 17501630 - 102029014 AGCD01037956 MODEL 8809579 protein-coding Tpd52l2 TPD52 like 2 ENCODES a protein that exhibits protein homodimerization activity (ortholog); ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog); FOUND IN cytoplasm (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955528 371761 389714 - 102028674 AGCD01069526;GBDF01120852;XM_005409929;XM_005409933;XM_005409935;XM_005409939;XM_013507485;XM_013507486 XP_005409986;XP_005409990;XP_005409992;XP_005409996;XP_013362939;XP_013362940 MODEL 8756816 protein-coding Pcbp1 poly(rC) binding protein 1 ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); mRNA binding (ortholog); RNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); viral RNA genome replication (ortholog); PARTICIPATES IN iron homeostasis pathway; iron storage pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955424 15045642 15047184 - 102010600 AGCD01024682;GBBH01003850;GBDK01016452;XM_005385632 XP_005385689 MODEL 8773361 ncrna LOC102026316 uncharacterized LOC102026316 NW_004955477 10048466 10053583 - 102026316 AGCD01055689;GBDF01017248;XR_263667 MODEL 9035046 protein-coding Sec24b SEC24 homolog B, COPII component ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN aorta morphogenesis (ortholog); auditory receptor cell morphogenesis (ortholog); auditory receptor cell stereocilium organization (ortholog); FOUND IN COPII vesicle coat (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); cytosol (ortholog) NW_004955496 666728 732829 - 102026885 AGCD01062237;AGCD01062238;AGCD01062239;AGCD01062240;AGCD01062241;GBBH01127061;GBCE01024521;XM_013505418 XP_013360872 MODEL 8766898 pseudo LOC102010402 small integral membrane protein 15-like NW_004955434 9168651 9169463 + 102010402 AGCD01032291 MODEL 10161148 protein-coding LOC106147112 collagen alpha-1(I) chain-like NW_004955520 2942846 2947790 - 106147112 AGCD01068087;GBBH01209943;XM_013507020 XP_013362474 MODEL 8948395 protein-coding LOC102019268 cytoskeleton-associated protein 2-like NW_004955475 12067113 12069248 - 102019268 AGCD01055178;GBDI01308945;XM_013502802 XP_013358256 MODEL 9030715 protein-coding Lin7a lin-7 cell polarity scaffold A ENCODES a protein that exhibits L27 domain binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN inner ear development (ortholog); neurotransmitter secretion (ortholog); synaptic vesicle transport (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN basolateral plasma membrane (ortholog); membrane (ortholog); synapse (ortholog) NW_004955405 19403002 19548716 - 102023106 AGCD01005035;AGCD01005036;AGCD01005037;AGCD01005038;GBDJ01263209;XM_005374368;XM_005374369;XM_005374370;XM_013517946 XP_005374425;XP_005374426;XP_005374427;XP_013373400 MODEL 8967547 protein-coding Wdr36 WD repeat domain 36 INVOLVED IN regulation of axon extension (ortholog); retina homeostasis (ortholog); ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH allergic asthma (ortholog); allergic rhinitis (ortholog); asthma (ortholog); FOUND IN small-subunit processome (ortholog) NW_004955418 3988073 4023425 - 102017017 AGCD01018806;AGCD01018807;GBDK01006850;XM_005382167;XM_013513044 XP_005382224;XP_013368498 MODEL 39133283 snrna U4 U4 spliceosomal RNA 8866887 protein-coding Slc17a4 solute carrier family 17 member 4 ENCODES a protein that exhibits sodium:phosphate symporter activity (ortholog); thyroid hormone transmembrane transporter activity (ortholog); urate transmembrane transporter activity (ortholog); INVOLVED IN sodium-dependent phosphate transport (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog) NW_004955483 1307081 1345962 - 102029969 AGCD01057645;GBCQ01012294;XM_005403342;XM_013503755 XP_005403399;XP_013359209 MODEL 8930747 pseudo LOC102021766 ribosome biogenesis protein BRX1 homolog NW_004955418 2267162 2269572 + 102021766 AGCD01018753 MODEL 9050250 protein-coding Trim7 tripartite motif containing 7 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); nucleus (ortholog) NW_004955530 119088 128353 + 102003481 AGCD01069830;GBDK01397066;XM_005410097;XM_005410098 XP_005410154;XP_005410155 MODEL 8902761 protein-coding Ptdss1 phosphatidylserine synthase 1 ENCODES a protein that exhibits L-serine-phosphatidylcholine phosphatidyltransferase activity (ortholog); L-serine-phosphatidylethanolamine phosphatidyltransferase activity (ortholog); INVOLVED IN phosphatidylserine biosynthetic process (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); Lenz-Majewski hyperostotic dwarfism (ortholog); microcephaly (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955417 12268908 12327127 + 102005804 AGCD01018160;AGCD01018161;AGCD01018162;GBDF01049061;XM_005381833 XP_005381890 MODEL 626189171 snorna SNORA67 small nucleolar RNA, H/ACA box 67 8824622 pseudo LOC102009644 ubiquitin-40S ribosomal protein S27a pseudogene NW_004955516 2584233 2584809 - 102009644 AGCD01067462 MODEL 8830875 protein-coding Rfng RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ENCODES a protein that exhibits O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN negative regulation of Notch signaling pathway (ortholog); positive regulation of Notch signaling pathway (ortholog); regulation of Notch signaling pathway (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH Weight Gain (ortholog) NW_004955506 1110146 1113130 + 102022207 AGCD01065245;AGCD01065246;GBBH01119203;GBBH01119219;XM_005407503 XP_005407560 MODEL 8831395 protein-coding Tiam1 TIAM Rac1 associated GEF 1 ENCODES a protein that exhibits ephrin receptor binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); kinase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); brain-derived neurotrophic factor receptor signaling pathway (ortholog); cardiac muscle hypertrophy (ortholog); PARTICIPATES IN brain-derived neurotrophic factor signaling pathway; E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Mouth Neoplasms (ortholog); neurodevelopmental disorder with language delay and seizures (ortholog); FOUND IN axonal growth cone (ortholog); cell junction (ortholog); cell-cell contact zone (ortholog) NW_004955407 30804769 31178420 - 102012732 AGCD01007639;AGCD01007640;AGCD01007641;AGCD01007642;GBDF01087706;XM_005375657;XM_005375658;XM_005375660;XM_013504080;XM_013504086;XM_013504090 XP_005375714;XP_005375715;XP_005375717;XP_013359534;XP_013359540;XP_013359544 MODEL 8929571 protein-coding Endou endonuclease, poly(U) specific ENCODES a protein that exhibits RNA binding (ortholog); RNA endonuclease activity (ortholog); serine-type peptidase activity (ortholog); INVOLVED IN female pregnancy (ortholog); negative regulation of lipid catabolic process (ortholog); post-transcriptional gene silencing (ortholog); FOUND IN cytoplasm (ortholog) NW_004955500 6631749 6653457 - 102017475 AGCD01063888;AGCD01063889;GBDI01340378;XM_005406609;XM_013505657;XM_013505658;XM_013505660 XP_005406666;XP_013361111;XP_013361112;XP_013361114 MODEL 8787560 pseudo LOC102030431 plasminogen activator inhibitor 1 RNA-binding protein-like NW_004955421 8363455 8408340 - 102030431 AGCD01021809;AGCD01021810;AGCD01021811 MODEL 8998006 ncrna LOC102011177 uncharacterized LOC102011177 NW_004955408 10359375 10380970 - 102011177 AGCD01008267;AGCD01008268;GBDF01237961;XR_259677 MODEL 8868138 protein-coding Rad9a RAD9 checkpoint clamp component A ENCODES a protein that exhibits 3'-5'-DNA exonuclease activity (ortholog); double-stranded DNA 3'-5' DNA exonuclease activity (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to ionizing radiation (ortholog); DNA damage checkpoint signaling (ortholog); DNA damage response (ortholog); ASSOCIATED WITH Neoplasms, Second Primary (ortholog); FOUND IN checkpoint clamp complex (ortholog); cytoplasm (ortholog); nuclear body (ortholog) NW_004955422 18079634 18146122 - 102021357 AGCD01022936;AGCD01022937;GBBH01142846;XM_005384341;XM_005384342;XM_005384343;XM_013513939;XM_013513940;XM_013513941;XM_013513942;XM_013513943 XP_005384398;XP_005384399;XP_005384400;XP_013369393;XP_013369394;XP_013369395;XP_013369396;XP_013369397 MODEL 8898501 protein-coding Prrc2b proline rich coiled-coil 2B INVOLVED IN in utero embryonic development (ortholog) NW_004955513 1137099 1187724 + 102022524 AGCD01066845;GBDF01085170;XM_005408365;XM_005408368;XM_005408369;XM_005408370;XM_013506607;XM_013506608 XP_005408422;XP_005408425;XP_005408426;XP_005408427;XP_013362061;XP_013362062 MODEL 8953987 protein-coding Smim1 small integral membrane protein 1 (Vel blood group) ENCODES a protein that exhibits protein homodimerization activity (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955486 7889510 7895281 - 102022928 AGCD01059139;GBDK01081865;XM_005404132;XM_005404133 XP_005404189;XP_005404190 MODEL 8719921 ncrna LOC102012800 uncharacterized LOC102012800 NW_004955436 20441094 20445316 - 102012800 AGCD01034024;GBCB01036539;XR_261802 MODEL 8945640 ncrna LOC102006658 uncharacterized LOC102006658 NW_004955415 30510340 30526011 + 102006658 AGCD01016664;GBDF01195211;XR_001233255;XR_001233256;XR_001233257;XR_001233258 MODEL 8897742 protein-coding Ppil2 peptidylprolyl isomerase like 2 ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-ubiquitin ligase activity (ortholog); INVOLVED IN protein localization to plasma membrane (ortholog); protein polyubiquitination (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955442 17426154 17449079 - 102014295 AGCD01037955;GBBH01166387;XM_005391698;XM_005391699;XM_013517867;XM_013517868;XM_013517869;XM_013517870;XM_013517871;XR_001235406 XP_005391755;XP_005391756;XP_013373321;XP_013373322;XP_013373323;XP_013373324;XP_013373325 MODEL 8770712 protein-coding LOC102024508 forkhead box protein L1 NW_004955541 1387390 1392842 + 102024508 AGCD01071378;AGCD01071379;GBCE01132585;GBCE01150013;XM_013508009 XP_013363463 MODEL 8846598 protein-coding LOC102017681 microtubule-associated tumor suppressor candidate 2-like NW_004955497 8132720 8368038 + 102017681 AGCD01062697;AGCD01062698;AGCD01062699;AGCD01062700;AGCD01062701;AGCD01062702;AGCD01062703;AGCD01062704;GBDF01251346;XM_005406382 XP_005406439 MODEL 8961829 protein-coding Rxfp1 relaxin family peptide receptor 1 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); hormone binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); cell differentiation (ortholog); ASSOCIATED WITH endometriosis (ortholog) NW_004955471 8860906 8963016 - 102009710 AGCD01053196;GBDJ01229708;XM_005400936;XM_005400937;XM_005400938;XM_013522859;XM_013522860;XM_013522861 XP_005400993;XP_005400994;XP_005400995;XP_013378313;XP_013378314;XP_013378315 MODEL 8726546 protein-coding Rbm17 RNA binding motif protein 17 INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Spinocerebellar Ataxias (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955421 22732757 22745926 + 102030537 AGCD01022147;AGCD01022148;GBDF01086381;XM_005383861 XP_005383918 MODEL 8784301 protein-coding Prelp proline and arginine rich end leucine rich repeat protein ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN cellular senescence (ortholog) NW_004955406 39429845 39442577 + 102012727 AGCD01006628;AGCD01006629;GBBH01031868;XM_005375267;XM_013522616 XP_005375324;XP_013378070 MODEL 8913280 pseudo LOC102005572 tRNA pseudouridine(38/39) synthase-like NW_004955409 17846564 17848790 + 102005572 AGCD01009800 MODEL 8846431 protein-coding LOC102010812 zinc finger protein 35 NW_004955420 26847358 26895078 - 102010812 AGCD01021434;AGCD01021435;GBCB01086637;XM_013513410;XM_013513411;XM_013513412;XM_013513413;XM_013513414;XM_013513415 XP_013368864;XP_013368865;XP_013368866;XP_013368867;XP_013368868;XP_013368869 MODEL 8739981 ncrna LOC102008517 uncharacterized LOC102008517 NW_004955412 20462018 20473633 + 102008517 AGCD01013009;GBDF01220421;XR_260003 MODEL 8776788 protein-coding Snx21 sorting nexin family member 21 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); FOUND IN early endosome membrane (ortholog) NW_004955445 11454802 11462625 - 102027584 AGCD01039695;GBDJ01139116;XM_005392407 XP_005392464 MODEL 8856599 pseudo LOC102028641 cell division control protein 42 homolog NW_004955488 5783989 5785031 - 102028641 AGCD01059635 MODEL 10181327 ncrna LOC106148211 uncharacterized LOC106148211 NW_004955417 30344866 30347630 + 106148211 AGCD01018619;GBDJ01097674;XR_001233451;XR_001233452 MODEL 8740059 protein-coding Slc68a1 solute carrier family 68 member 1 FOUND IN plasma membrane (ortholog) NW_004955485 7945547 7957522 - 102016164 AGCD01058680;GBBH01144041;XM_005403836;XM_013504045;XM_013504046 XP_005403893;XP_013359499;XP_013359500 MODEL 8959830 ncrna LOC102007041 uncharacterized LOC102007041 NW_004955429 13140112 13203078 + 102007041 AGCD01028736;AGCD01028737;GBDF01304725;XR_261328 MODEL 8893506 protein-coding LOC102027287 olfactory receptor 10Z1 NW_004955468 10458122 10459063 + 102027287 AGCD01052084;XM_005400155 XP_005400212 MODEL 8831905 protein-coding Setd5 SET domain containing 5 ENCODES a protein that exhibits histone H3 methyltransferase activity (ortholog); histone H3K36 methyltransferase activity (ortholog); histone H3K9 methyltransferase activity (ortholog); INVOLVED IN cognition (ortholog); negative regulation of transcription by RNA polymerase III (ortholog); regulation of chromatin organization (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 23 (ortholog); breast cancer (ortholog); FOUND IN chromatin (ortholog); euchromatin (ortholog); nucleoplasm (ortholog) NW_004955561 968814 1091687 + 102029235 AGCD01073827;AGCD01073828;AGCD01073829;AGCD01073830;AGCD01073831;GBDJ01090978;XM_005413006;XM_005413007;XM_005413008;XM_005413009;XM_005413010;XM_005413012;XM_005413013;XM_005413014;XM_005413015;XM_013509075;XM_013509076;XM_013509077;XM_013509078 XP_005413063;XP_005413064;XP_005413065;XP_005413066;XP_005413067;XP_005413069;XP_005413070;XP_005413071;XP_005413072;XP_013364529;XP_013364530;XP_013364531;XP_013364532 MODEL 8979644 pseudo LOC102029018 zinc finger protein 334-like NW_004955445 10872207 10884142 + 102029018 AGCD01039680 MODEL 8887094 protein-coding LOC102011607 3-beta-hydroxysteroid sulfotransferase-like NW_004955609 280400 319841 - 102011607 AGCD01077056;AGCD01077057;GBCB01061931;XM_005414930 XP_005414987 MODEL 9037341 protein-coding LOC102027981 E3 ubiquitin-protein ligase TRIM38 NW_004955483 1157313 1167091 - 102027981 AGCD01057644;GBCQ01174864;XM_013503782;XM_013503783 XP_013359236;XP_013359237 MODEL 8781061 protein-coding Qdpr quinoid dihydropteridine reductase ENCODES a protein that exhibits 6,7-dihydropteridine reductase activity (ortholog); identical protein binding (ortholog); NADH binding (ortholog); INVOLVED IN cellular response to xenobiotic stimulus (ortholog); liver development (ortholog); response to aluminum ion (ortholog); PARTICIPATES IN dopa responsive dystonia pathway; dopamine biosynthetic pathway; epinephrine biosynthetic pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); BH4-deficient hyperphenylalaninemia C (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog) NW_004955480 6646088 6666866 + 102024227 AGCD01056687;GBBH01163988;GBDF01119216;XM_005402546 XP_005402603 MODEL 9066355 pseudo LOC102018836 60S ribosomal protein L9 pseudogene NW_004955421 9029923 9030616 + 102018836 AGCD01021830 MODEL 8996269 pseudo LOC102003803 calmodulin-like NW_004955437 19660488 19661153 + 102003803 AGCD01034865 MODEL 39133285 snrna U4 U4 spliceosomal RNA 8957270 protein-coding Sec24c SEC24 homolog C, COPII component ENCODES a protein that exhibits cargo adaptor activity (ortholog); SNARE binding (ortholog); zinc ion binding (ortholog); INVOLVED IN COPII-coated vesicle cargo loading (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); microcephaly (ortholog); FOUND IN COPII vesicle coat (ortholog); cytosol (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955437 18132969 18161167 - 102013540 AGCD01034777;GBCE01076831;XM_005389963;XM_005389964;XM_005389965 XP_005390020;XP_005390021;XP_005390022 MODEL 8842626 protein-coding Lin7b lin-7 cell polarity scaffold B ENCODES a protein that exhibits PDZ domain binding (ortholog); protein domain specific binding (ortholog); protein kinase binding (ortholog); INVOLVED IN neurotransmitter secretion (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell-cell junction (ortholog); plasma membrane (ortholog) NW_004955559 1610924 1613736 - 102020061 AGCD01073653;GBCB01002101;XM_013509002;XM_013509003 XP_013364456;XP_013364457 MODEL 8780262 protein-coding Ripply1 ripply transcriptional repressor 1 INVOLVED IN bone morphogenesis (ortholog); Notch signaling pathway (ortholog); regulation of gene expression (ortholog) NW_004955490 9167071 9172101 + 102021676 AGCD01060306;XM_005404707 XP_005404764 MODEL 9050685 protein-coding Wdr37 WD repeat domain 37 INVOLVED IN corpus callosum development (ortholog); lymphocyte homeostasis (ortholog); ASSOCIATED WITH cerebellar hypoplasia (ortholog); coloboma (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955421 30097046 30161762 - 102023043 AGCD01022380;AGCD01022381;AGCD01022382;GBDF01221568;XM_005383910;XM_013513754;XM_013513755;XM_013513756;XM_013513758;XM_013513759 XP_005383967;XP_013369208;XP_013369209;XP_013369210;XP_013369212;XP_013369213 MODEL 10359836 protein-coding Btbd18 BTB domain containing 18 INVOLVED IN male meiosis I (ortholog); piRNA transcription (ortholog); spermatogenesis (ortholog); FOUND IN nucleus (ortholog) NW_004955511 2641848 2647679 - 106146243 AGCD01066422;XM_013506440 XP_013361894 MODEL 8930280 protein-coding Slc17a5 solute carrier family 17 member 5 ENCODES a protein that exhibits D-glucuronate transmembrane transporter activity (ortholog); sialic acid transmembrane transporter activity (ortholog); sialic acid:proton symporter activity (ortholog); INVOLVED IN neurotransmitter loading into synaptic vesicle (ortholog); response to bacterium (ortholog); sialic acid transport (ortholog); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; sialic acid storage disease pathway; ASSOCIATED WITH enhanced S-cone syndrome (ortholog); focal segmental glomerulosclerosis (ortholog); focal segmental glomerulosclerosis 1 (ortholog); FOUND IN basolateral plasma membrane (ortholog); cytoplasmic vesicle (ortholog); glutamatergic synapse (ortholog) NW_004955493 8693933 8719250 - 102023049 AGCD01061332;AGCD01061333;AGCD01061334;AGCD01061335;AGCD01061336;GBDJ01130112;GBDK01135048;XM_013504876 XP_013360330 MODEL 8797223 protein-coding Trim71 tripartite motif containing 71 ENCODES a protein that exhibits miRNA binding (ortholog); translation repressor activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); fibroblast growth factor receptor signaling pathway (ortholog); G1/S transition of mitotic cell cycle (ortholog); ASSOCIATED WITH congenital hydrocephalus (ortholog); congenital hydrocephalus 4 (ortholog); COVID-19 (ortholog); FOUND IN P-body (ortholog) NW_004955421 97130 174326 + 102026436 AGCD01021547;AGCD01021548;AGCD01021549;AGCD01021550;GBDF01285530;XM_013513644 XP_013369098 MODEL 8816539 pseudo LOC102009646 60S ribosomal protein L39 pseudogene NW_004955520 1114140 1114853 + 102009646 AGCD01068043;XM_005409228 MODEL 8773163 protein-coding Rfpl4b ret finger protein like 4B NW_004955526 4242108 4253095 - 102013207 AGCD01069364;XM_013507355 XP_013362809 MODEL 8810185 pseudo LOC102025943 heterogeneous nuclear ribonucleoproteins A2/B1-like NW_004955543 2450899 2498166 - 102025943 AGCD01071653;AGCD01071654 MODEL 8939877 pseudo LOC102026319 complex I assembly factor TMEM126B, mitochondrial pseudogene NW_004955416 10005473 10006293 + 102026319 AGCD01017101;XM_005381680 MODEL 10306300 ncrna LOC106148212 uncharacterized LOC106148212 NW_004955417 15382017 15394082 + 106148212 AGCD01018231;GBDF01207503;XR_001233453;XR_001233454 MODEL 8972043 protein-coding Plekha3 pleckstrin homology domain containing A3 ENCODES a protein that exhibits identical protein binding (ortholog); molecular carrier activity (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955403 18347309 18366503 - 102025747 AGCD01002097;GBCE01098308;GBDK01139966;XM_013512613 XP_013368067 MODEL 8797137 protein-coding Endov endonuclease V ENCODES a protein that exhibits DNA binding (ortholog); DNA endonuclease activity, producing 5'-phosphomonoesters (ortholog); magnesium ion binding (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); nucleolus (ortholog) NW_004955506 2483409 2495484 - 102023504 AGCD01065296;GBCE01094306;XM_013506016;XM_013506017 XP_013361470;XP_013361471 MODEL 9047459 protein-coding Smim10l1 small integral membrane protein 10 like 1 FOUND IN mitochondrion (ortholog) NW_004955413 8350480 8353727 + 102011524 AGCD01013859;GBCE01075120;XM_005378947 XP_005379004 MODEL 8852633 ncrna LOC102010405 uncharacterized LOC102010405 NW_004955436 1481983 1512078 + 102010405 AGCD01033577;AGCD01033578;AGCD01033579;GBDF01153927;XR_001234957;XR_001234958;XR_001234959;XR_001234960;XR_001234961;XR_001234962;XR_001234963;XR_001234964 MODEL 8780199 protein-coding Tiam2 TIAM Rac1 associated GEF 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); fibrillar center (ortholog) NW_004955439 6942702 7147145 - 102019737 AGCD01035762;AGCD01035763;GBDJ01185825;XM_005390545;XM_005390546;XM_005390547;XM_013517329;XM_013517330 XP_005390602;XP_005390603;XP_005390604;XP_013372783;XP_013372784 MODEL 8834610 protein-coding Pcbp2 poly(rC) binding protein 2 ENCODES a protein that exhibits C-rich single-stranded DNA binding (ortholog); DNA binding (ortholog); enzyme binding (ortholog); INVOLVED IN chromatin looping (ortholog); IRES-dependent viral translational initiation (ortholog); negative regulation of cGAS/STING signaling pathway (ortholog); PARTICIPATES IN iron homeostasis pathway; iron storage pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955458 747770 773885 + 102012505 AGCD01047153;AGCD01047154;GBBH01003854;GBDJ01100806;XM_013520929;XM_013520930;XM_013520931;XM_013520932;XM_013520933;XM_013520934;XM_013520935;XM_013520936;XM_013520937 XP_013376383;XP_013376384;XP_013376385;XP_013376386;XP_013376387;XP_013376388;XP_013376389;XP_013376390;XP_013376391 MODEL 9042100 protein-coding Rad9b RAD9 checkpoint clamp component B ASSOCIATED WITH neural tube defect (ortholog); FOUND IN nucleus (ortholog) NW_004955482 7405520 7459240 + 102023472 AGCD01057466;AGCD01057467;AGCD01057468;GBDF01050748;XM_005403153;XM_005403154;XM_013503652;XM_013503653;XM_013503654;XM_013503655 XP_005403210;XP_005403211;XP_013359106;XP_013359107;XP_013359108;XP_013359109 MODEL 8837515 ncrna LOC102012801 uncharacterized LOC102012801 NW_004955437 8031121 8040440 - 102012801 AGCD01034477;GBDF01226069;XR_261867 MODEL 10369619 protein-coding LOC106147113 translation initiation factor IF-2-like NW_004955520 1428491 1429500 - 106147113 AGCD01068053;AGCD01068054;GBDF01045008;XM_013507022 XP_013362476 MODEL 8927081 ncrna LOC102023515 uncharacterized LOC102023515 NW_004955517 2388935 2391683 + 102023515 AGCD01067629;GBBH01024160;XR_264549 MODEL 8930669 protein-coding Pdk2 pyruvate dehydrogenase kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to nutrient (ortholog); cellular response to reactive oxygen species (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH cardiomyopathy (ortholog); FOUND IN mitochondrion (ortholog); pyruvate dehydrogenase complex (ortholog) NW_004955451 11547660 11559266 - 102016337 AGCD01043359;GBBH01142102;XM_005394182 XP_005394239 MODEL 8716337 pseudo LOC102017682 deoxynucleotidyltransferase terminal-interacting protein 2 pseudogene NW_004955498 2146251 2152131 + 102017682 AGCD01062766;AGCD01062767 MODEL 616940617 snorna SNORA68 small nucleolar RNA, H/ACA box 68 8727192 protein-coding Ppil3 peptidylprolyl isomerase like 3 PARTICIPATES IN spliceosome pathway; FOUND IN catalytic step 2 spliceosome (ortholog) NW_004955403 640956 648498 + 102029462 AGCD01001700;GBCQ01038792;XM_005373232;XM_005373233;XM_005373234;XM_005373235 XP_005373289;XP_005373290;XP_005373291;XP_005373292 MODEL 8768365 protein-coding Rbm18 RNA binding motif protein 18 FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955419 5800761 5822378 + 102009947 AGCD01019839;GBDF01122288;XM_005382536 XP_005382593 MODEL 8856231 protein-coding Rxfp2 relaxin family peptide receptor 2 ENCODES a protein that exhibits peptide hormone binding (ortholog); protein-hormone receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); male gonad development (ortholog); ASSOCIATED WITH cryptorchidism (ortholog); disorder of sexual development (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN plasma membrane (ortholog) NW_004955431 14050537 14105852 - 102016505 AGCD01030318;AGCD01030319;GBDF01231821;XM_013515731 XP_013371185 MODEL 8960217 protein-coding Ptdss2 phosphatidylserine synthase 2 ENCODES a protein that exhibits CDP-diacylglycerol-serine O-phosphatidyltransferase activity (ortholog); L-serine-phosphatidylethanolamine phosphatidyltransferase activity (ortholog); INVOLVED IN phosphatidylserine biosynthetic process (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; FOUND IN endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955476 11554962 11585574 - 102022914 AGCD01055466;GBDJ01080587;XM_005401863;XM_013502927;XM_013502928;XM_013502929;XM_013502930;XM_013502931;XM_013502932 XP_005401920;XP_013358381;XP_013358382;XP_013358383;XP_013358384;XP_013358385;XP_013358386 MODEL 8922549 protein-coding Tpd52l3 TPD52 like 3 NW_004955434 10291418 10293330 + 102012997 AGCD01032336;XM_005388749 XP_005388806 MODEL 8863316 ncrna LOC102015805 uncharacterized LOC102015805 NW_004955406 28240519 28241931 + 102015805 AGCD01006295;XR_259506 MODEL 8942984 ncrna LOC102011178 uncharacterized LOC102011178 NW_004955457 13088413 13091964 + 102011178 AGCD01047037;GBBH01088650;XR_262949 MODEL 8944338 pseudo LOC102029019 serine/threonine-protein kinase PDIK1L pseudogene NW_004955572 900 2395 + 102029019 AGCD01074890;XM_005413648 MODEL 8840284 protein-coding Prrc2c proline rich coiled-coil 2C INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); stress granule assembly (ortholog); FOUND IN cytosol (ortholog) NW_004955406 12087072 12165266 + 102022880 AGCD01005906;AGCD01005907;AGCD01005908;AGCD01005909;GBBH01092333;GBDF01126038;XM_005374839;XM_013520642 XP_005374896;XP_013376096 MODEL 8850074 ncrna LOC102019271 uncharacterized LOC102019271 NW_004955480 8712236 8827968 - 102019271 AGCD01056730;AGCD01056731;AGCD01056732;AGCD01056733;GBBH01073803;XR_001230895;XR_001230896;XR_001230897;XR_001230899;XR_263747 MODEL 8853293 protein-coding Qki QKI, KH domain containing RNA binding ENCODES a protein that exhibits internal N(7)-methylguanine-containing RNA reader activity (ortholog); miRNA binding (ortholog); mRNA 3'-UTR binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); axon ensheathment (ortholog); intracellular mRNA localization (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH demyelinating disease (ortholog); Experimental Autoimmune Encephalomyelitis (ortholog); high grade glioma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955439 17925205 18079727 - 102005844 AGCD01036045;AGCD01036046;AGCD01036047;AGCD01036048;AGCD01036049;GBDJ01179084;XM_013517307 XP_013372761 MODEL 8960970 protein-coding Smim11 small integral membrane protein 11 NW_004955407 33740552 33750974 + 102026831 AGCD01007707;GBDF01195734;XM_005375701;XM_013504452 XP_005375758;XP_013359906 MODEL 8720990 pseudo LOC102008519 mitochondrial import inner membrane translocase subunit TIM14-like NW_004955412 23530210 23530974 + 102008519 AGCD01013090 MODEL 39133287 snrna U4 U4 spliceosomal RNA 8868470 protein-coding LOC102028642 melanoma-associated antigen 10-like NW_004955489 4422091 4531174 - 102028642 AGCD01059902;AGCD01059903;AGCD01059904;AGCD01059905;AGCD01059906;GBBH01050182;XM_013504453;XM_013504454 XP_013359907;XP_013359908 MODEL 8915616 pseudo LOC102017683 fatty acid-binding protein, liver-like NW_004955424 757151 760005 + 102017683 AGCD01024207 MODEL 8949998 protein-coding Snx22 sorting nexin 22 ASSOCIATED WITH osteogenesis imperfecta (ortholog) NW_004955450 11246817 11248870 - 102010010 AGCD01042652;GBBH01150804;GBDK01011077;XM_013519037;XM_013519038;XR_001235925 XP_013374491;XP_013374492 MODEL 9052930 protein-coding Ripply2 ripply transcriptional repressor 2 INVOLVED IN axis specification (ortholog); bone morphogenesis (ortholog); determination of left/right symmetry (ortholog); ASSOCIATED WITH spondylocostal dysostosis 6 (ortholog); Spondylocostal Dysostosis, Autosomal Recessive (ortholog) NW_004955411 11418744 11422766 + 102016142 AGCD01011819;GBDK01103623;XM_005377933 XP_005377990 MODEL 8810262 ncrna LOC102027293 uncharacterized LOC102027293 NW_004955474 5053154 5057209 + 102027293 AGCD01054392;XR_263595 MODEL 9031080 protein-coding Wdr4 WDR4 tRNA N7-guanosine methyltransferase non-catalytic subunit ENCODES a protein that exhibits enzyme activator activity (ortholog); INVOLVED IN tRNA (guanine-N7)-methylation (ortholog); tRNA modification (ortholog); ASSOCIATED WITH Galloway-Mowat syndrome (ortholog); Galloway-Mowat syndrome 6 (ortholog); genetic disease (ortholog); FOUND IN chromosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 39044328 39066277 + 102008697 AGCD01007821;GBCB01087848;XM_005375807;XM_005375808 XP_005375864;XP_005375865 MODEL 8977474 protein-coding LOC102007042 olfactory receptor 5M9 NW_004955511 1599335 1600267 - 102007042 AGCD01066373;XM_005407967 XP_005408024 MODEL 8982443 ncrna LOC102011610 uncharacterized LOC102011610 NW_004955451 5820260 5823021 - 102011610 AGCD01043179;GBDJ01389060;XR_001236001;XR_001236002 MODEL 9006717 pseudo LOC102027982 cytochrome c-like NW_004955419 7349491 7349818 + 102027982 AGCD01019880 MODEL 8899858 pseudo LOC102006665 10 kDa heat shock protein, mitochondrial pseudogene NW_004955482 8898964 8899780 - 102006665 AGCD01057555 MODEL 9030070 ncrna LOC102018837 uncharacterized LOC102018837 NW_004955421 27841812 27860388 - 102018837 AGCD01022297;GBBH01162065;XR_001233833;XR_001233834 MODEL 9020238 ncrna LOC102021768 uncharacterized LOC102021768 NW_004955484 9693663 9696787 + 102021768 AGCD01058425;GBDF01223320;XR_263900 MODEL 8787400 protein-coding Eng endoglin ENCODES a protein that exhibits BMP binding (ortholog); coreceptor activity (ortholog); galactose binding (ortholog); INVOLVED IN angiogenesis (ortholog); artery morphogenesis (ortholog); atrial cardiac muscle tissue morphogenesis (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); arteriovenous malformation (ortholog); arteriovenous malformations of the brain (ortholog); FOUND IN cell surface (ortholog); endothelial microparticle (ortholog); external side of plasma membrane (ortholog) NW_004955419 818797 853319 + 102025796 AGCD01019613;AGCD01019614;AGCD01019615;AGCD01019616;AGCD01019617;GBCQ01003907;XM_013513164;XM_013513165;XM_013513166;XM_013513167 XP_013368618;XP_013368619;XP_013368620;XP_013368621 MODEL 8717015 protein-coding LOC102025955 NXPE family member 3-like NW_004955573 723592 744642 + 102025955 AGCD01075003;AGCD01075004;GBCE01055284;XM_005413736 XP_005413793 MODEL 8874515 pseudo LOC102010411 WW domain-containing adapter protein with coiled-coil pseudogene NW_004955545 1844626 1846296 - 102010411 AGCD01071873 MODEL 9011568 ncrna LOC102030432 uncharacterized LOC102030432 NW_004955422 6732594 6746289 - 102030432 AGCD01022607;GBDF01208017;XR_260855 MODEL 9044789 ncrna LOC102023517 uncharacterized LOC102023517 NW_004955434 20459141 20481843 + 102023517 AGCD01032616;GBDF01086413;XR_261635 MODEL 8749384 protein-coding Sec24d SEC24 homolog D, COPII component ENCODES a protein that exhibits SNARE binding (ortholog); zinc ion binding (ortholog); INVOLVED IN COPII-coated vesicle cargo loading (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Cole-Carpenter syndrome (ortholog); Cole-Carpenter Syndrome 2 (ortholog); epilepsy (ortholog); FOUND IN COPII vesicle coat (ortholog) NW_004955428 21381809 21475329 + 102024827 AGCD01028137;AGCD01028138;GBDI01076509;XM_013515264;XM_013515265 XP_013370718;XP_013370719 MODEL 8962076 protein-coding Lin7c lin-7 cell polarity scaffold C ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); L27 domain binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN morphogenesis of an epithelial sheet (ortholog); neurotransmitter secretion (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955476 6650539 6658811 - 102016379 AGCD01055339;GBDF01088577;XM_005401750 XP_005401807 MODEL 8837505 protein-coding Setd6 SET domain containing 6, protein lysine methyltransferase ENCODES a protein that exhibits NF-kappaB binding (ortholog); protein-lysine N-methyltransferase activity (ortholog); S-adenosyl-L-methionine binding (ortholog); INVOLVED IN peptidyl-lysine monomethylation (ortholog); regulation of inflammatory response (ortholog); stem cell differentiation (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955433 15934091 15937738 + 102012677 AGCD01031777;GBBH01050346;GBCQ01063968;XM_005388507 XP_005388564 MODEL 8840792 protein-coding Slc6a1 solute carrier family 6 member 1 ENCODES a protein that exhibits amino acid:sodium symporter activity (ortholog); gamma-aminobutyric acid transmembrane transporter activity (ortholog); gamma-aminobutyric acid:sodium:chloride symporter activity (ortholog); INVOLVED IN associative learning (ortholog); chloride transmembrane transport (ortholog); gamma-aminobutyric acid import (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); amyotrophic lateral sclerosis (ortholog); autism spectrum disorder (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); GABA-ergic synapse (ortholog) NW_004955429 13930899 13946010 + 102014155 AGCD01028771;GBDF01171454;XM_005387004;XM_005387005 XP_005387061;XP_005387062 MODEL 39133289 snrna U4 U4 spliceosomal RNA 8868661 protein-coding Btbd19 BTB domain containing 19 NW_004955464 13401388 13416924 - 102008074 AGCD01050274;AGCD01050275;GBDJ01381390;XM_005398728;XM_005398729;XM_005398730;XM_013521629 XP_005398785;XP_005398786;XP_005398787;XP_013377083 MODEL 10195714 ncrna LOC106149956 uncharacterized LOC106149956 NW_004955458 12865762 12870002 + 106149956 AGCD01047791;GBDF01252519;XR_001236451 MODEL 8930458 protein-coding Trim72 tripartite motif containing 72 ENCODES a protein that exhibits identical protein binding (ortholog); mitogen-activated protein kinase kinase kinase binding (ortholog); phosphatidylserine binding (ortholog); INVOLVED IN muscle organ development (ortholog); muscle system process (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); sarcolemma (ortholog) NW_004955493 8074521 8091611 + 102004173 AGCD01061260;AGCD01061261;AGCD01061262;AGCD01061263;GBCB01006024;XM_005405311;XM_005405312 XP_005405368;XP_005405369 MODEL 9011050 pseudo LOC102011180 multifunctional protein ADE2-like NW_004955458 11807530 11818009 - 102011180 AGCD01047760 MODEL 8853998 protein-coding LOC102024510 zinc finger protein 709-like NW_004955546 400816 405424 - 102024510 AGCD01071973;XM_013508420 XP_013363874 MODEL 8706988 protein-coding Pten phosphatase and tensin homolog ENCODES a protein that exhibits anaphase-promoting complex binding (ortholog); beta-catenin binding (ortholog); enzyme binding (ortholog); INVOLVED IN adult behavior (ortholog); angiogenesis (ortholog); apoptotic process (ortholog); PARTICIPATES IN altered phosphatidylinositol 3-kinase signaling pathway; altered phosphatidylinositol 3-kinase-Akt signaling pathway; endometrial cancer pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute megakaryocytic leukemia (ortholog); acute myocardial infarction (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955425 5007811 5091829 - 102026655 AGCD01025329;AGCD01025330;AGCD01025331;AGCD01025332;GBDJ01081006;XM_013514767 XP_013370221 MODEL 9063518 protein-coding Rft1 RFT1 glycolipid translocator homolog ENCODES a protein that exhibits glycolipid floppase activity (ortholog); INVOLVED IN dolichol-linked oligosaccharide biosynthetic process (ortholog); glycolipid translocation (ortholog); protein N-linked glycosylation (ortholog); ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation In (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955430 3055766 3096501 - 102029213 AGCD01029191;GBDI01215765;XM_005387364 XP_005387421 MODEL 9013670 protein-coding LOC102026321 diazepam-binding inhibitor-like 5 NW_004955481 2301282 2302439 + 102026321 AGCD01056873;GBDF01125100;XM_005402639 XP_005402696 MODEL 9036483 protein-coding LOC102029022 UDP-glucuronosyltransferase 2B31 NW_004955447 3642724 3652678 + 102029022 AGCD01040633;AGCD01040634;XM_013518534 XP_013373988 MODEL 8774344 protein-coding Prep prolyl endopeptidase ENCODES a protein that exhibits endopeptidase activity (ortholog); metallocarboxypeptidase activity (ortholog); peptidase activity (ortholog); INVOLVED IN angiotensin maturation (ortholog); protein catabolic process (ortholog); ASSOCIATED WITH amnestic disorder (ortholog); depressive disorder (ortholog); Disease Progression (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955411 30698112 30797096 - 102003527 AGCD01012263;GBCB01024464;GBDI01221451;XM_013510786 XP_013366240 MODEL 9008565 protein-coding Plekha4 pleckstrin homology domain containing A4 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN positive regulation of canonical Wnt signaling pathway (ortholog); positive regulation of Wnt signaling pathway, planar cell polarity pathway (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN extrinsic component of cytoplasmic side of plasma membrane (ortholog) NW_004955559 1756695 1775558 + 102003593 AGCD01073666;GBCQ01039883;XM_005412930 XP_005412987 MODEL 8913481 protein-coding Pcbp3 poly(rC) binding protein 3 ENCODES a protein that exhibits C-rich single-stranded DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN iron homeostasis pathway NW_004955407 42395149 42447312 + 102015175 AGCD01007891;AGCD01007892;GBDF01097466;XM_013505654;XM_013505656;XM_013505659;XM_013505661;XM_013505669;XM_013505674;XM_013505683 XP_013361108;XP_013361110;XP_013361113;XP_013361115;XP_013361123;XP_013361128;XP_013361137 MODEL 616940641 snorna SNORA69 small nucleolar RNA, H/ACA box 69 8757580 protein-coding Pdk3 pyruvate dehydrogenase kinase 3 ENCODES a protein that exhibits ATP binding (ortholog); protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to fatty acid (ortholog); hypoxia-inducible factor-1alpha signaling pathway (ortholog); peptidyl-serine phosphorylation (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease X-linked dominant 6 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955509 4809422 4888802 + 102018120 AGCD01066089;AGCD01066090;GBCE01085761;XM_005407844;XM_005407845;XM_005407846;XM_005407847;XM_005407848 XP_005407901;XP_005407902;XP_005407903;XP_005407904;XP_005407905 MODEL 8816657 protein-coding Smim12 small integral membrane protein 12 FOUND IN mitochondrion (ortholog) NW_004955452 12972797 12976963 - 102014003 AGCD01044376;GBBH01089725;XM_005395126;XM_005395127;XM_013519691 XP_005395183;XP_005395184;XP_013375145 MODEL 8756777 ncrna LOC102008525 uncharacterized LOC102008525 NW_004955414 26180989 26187857 + 102008525 AGCD01015640;GBDF01208439;XR_260197 MODEL 8800982 protein-coding Rxfp3 relaxin family peptide receptor 3 ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); INVOLVED IN phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); positive regulation of cytokinesis (ortholog) NW_004955426 19493990 19497074 + 102027551 AGCD01026547;XM_005386165 XP_005386222 MODEL 10086292 ncrna LOC106148213 uncharacterized LOC106148213 NW_004955417 31465901 31479134 - 106148213 AGCD01018652;GBDJ01402388;XR_001233456;XR_001233457 MODEL 8886873 pseudo LOC102027296 splicing regulatory glutamine/lysine-rich protein 1 pseudogene NW_004955415 6100244 6101868 - 102027296 AGCD01016012 MODEL 8820164 pseudo LOC102003804 thyrotropin-releasing hormone receptor-like NW_004955541 2505471 2509425 - 102003804 AGCD01071413 MODEL 8809823 pseudo LOC102010813 60S ribosomal protein L7-like 1 pseudogene NW_004955421 23607848 23608582 + 102010813 AGCD01022191 MODEL 8936849 pseudo LOC102005573 peroxiredoxin-1 pseudogene NW_004955410 34010516 34011152 - 102005573 AGCD01011394 MODEL 8701712 protein-coding LOC102012802 uncharacterized LOC102012802 NW_004955541 36527 43417 + 102012802 AGCD01071344;GBDI01026247;XM_005410957;XM_013507937;XM_013507938 XP_005411014;XP_013363391;XP_013363392 MODEL 9038826 protein-coding Ticam1 toll like receptor adaptor molecule 1 ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein kinase binding (ortholog); signaling adaptor activity (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); cellular response to lipopolysaccharide (ortholog); cellular response to oxidised low-density lipoprotein particle stimulus (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH Herpes Simplex Encephalitis (ortholog); Herpes Simplex Encephalitis 4 (ortholog); pneumoconiosis (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); endosome (ortholog) NW_004955495 4197083 4204999 + 102004084 AGCD01061902;GBDI01013112;XM_005405780;XM_005405782 XP_005405837;XP_005405839 MODEL 8800101 protein-coding Btbd2 BTB domain containing 2 ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); P-body (ortholog) NW_004955495 6072112 6085180 + 102022403 AGCD01062049;AGCD01062050;GBBH01062338;GBDF01084039;XM_005405935 XP_005405992 MODEL 10285813 ncrna LOC106147114 uncharacterized LOC106147114 NW_004955520 1429529 1432899 + 106147114 AGCD01068054;GBDF01280058;XR_001231869;XR_001231870 MODEL 9028028 protein-coding LOC102027983 chymotrypsinogen B NW_004955484 2395032 2397052 + 102027983 AGCD01058115;GBDJ01165550;XM_013503860 XP_013359314 MODEL 8825383 protein-coding Radil Rap associating with DIL domain INVOLVED IN substrate adhesion-dependent cell spreading (ortholog); FOUND IN microtubule (ortholog); protein-containing complex (ortholog) NW_004955460 10906944 10990369 + 102005905 AGCD01048623;AGCD01048624;AGCD01048625;AGCD01048626;GBDF01126679;XM_005397849;XM_013521246 XP_005397906;XP_013376700 MODEL 9025431 protein-coding LOC102021770 arylacetamide deacetylase-like 4 NW_004955486 1044485 1053799 + 102021770 AGCD01058918;GBCC01033407;XM_005403942;XM_005403943 XP_005403999;XP_005404000 MODEL 8721089 ncrna LOC102010412 uncharacterized LOC102010412 NW_004955545 2843891 2852564 - 102010412 AGCD01071925;GBDI01188014;XR_264882 MODEL 8961201 protein-coding Slc17a6 solute carrier family 17 member 6 ENCODES a protein that exhibits chloride channel activity (ortholog); L-glutamate uniporter activity (ortholog); potassium:proton antiporter activity (ortholog); INVOLVED IN hippocampus development (ortholog); hyaloid vascular plexus regression (ortholog); L-glutamate import (ortholog); ASSOCIATED WITH learning disability (ortholog); Memory Disorders (ortholog); transient cerebral ischemia (ortholog); FOUND IN early endosome (ortholog); excitatory synapse (ortholog); neuron projection (ortholog) NW_004955476 2813368 2854371 + 102009833 AGCD01055235;XM_005401732 XP_005401789 MODEL 8970252 ncrna LOC102012807 uncharacterized LOC102012807 NW_004955442 3947192 3955740 - 102012807 AGCD01037517;GBBH01153642;XR_262112 MODEL 8914517 protein-coding LOC102028649 olfactory receptor 4A47-like NW_004955422 92460 93377 + 102028649 AGCD01022393;XM_005384927 XP_005384984 MODEL 8726752 protein-coding Ppil4 peptidylprolyl isomerase like 4 FOUND IN cytosol (ortholog); nucleoplasm (ortholog); spliceosomal complex (ortholog) NW_004955439 11705096 11745478 + 102012687 AGCD01035919;AGCD01035920;AGCD01035921;AGCD01035922;GBDF01189460;XM_005390608 XP_005390665 MODEL 9033798 ncrna LOC102009650 uncharacterized LOC102009650 NW_004955537 1976715 1992245 - 102009650 AGCD01070909;GBDJ01200201;XR_001232066;XR_001232067;XR_001232068;XR_264772 MODEL 8813644 protein-coding LOC102017684 complement C1q-like protein 4 NW_004955500 8138111 8141865 - 102017684 AGCD01063981;GBDI01140203;XM_005415350 XP_005415407 MODEL 8740807 protein-coding LOC102030443 zinc finger protein 709-like NW_004955499 20444 50521 - 102030443 AGCD01063172;AGCD01063173;AGCD01063174;AGCD01063175;AGCD01063176;GBCE01102328;XM_013505620;XM_013505621 XP_013361074;XP_013361075 MODEL 8946513 protein-coding LOC102015807 40S ribosomal protein S2-like NW_004955407 42481379 42485367 + 102015807 AGCD01007892;GBDF01023024;XM_005375924 XP_005375981 MODEL 8833975 protein-coding Ripply3 ripply transcriptional repressor 3 INVOLVED IN heart development (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog) NW_004955407 36101206 36108808 + 102018471 AGCD01007757;AGCD01007758;GBBH01010607;GBDK01324835;XM_013504657 XP_013360111 MODEL 8957487 ncrna LOC102019274 uncharacterized LOC102019274 NW_004955482 9786132 9790762 - 102019274 AGCD01057583;XR_263854 MODEL 8778321 pseudo LOC102011611 spliceosome-associated protein CWC15 homolog pseudogene NW_004955403 25832090 25832764 + 102011611 AGCD01002295 MODEL 9013315 protein-coding Prrg1 proline rich and Gla domain 1 NW_004955587 289906 388534 - 102010848 AGCD01076063;AGCD01076064;GBDK01324063;XM_005414447;XM_013509903 XP_005414504;XP_013365357 MODEL 9002586 protein-coding Slc6a11 solute carrier family 6 member 11 ENCODES a protein that exhibits amino acid binding (ortholog); amino acid:sodium symporter activity (ortholog); gamma-aminobutyric acid:sodium:chloride symporter activity (ortholog); INVOLVED IN monocarboxylic acid transport (ortholog); neurotransmitter transport (ortholog); neurotransmitter uptake (ortholog); ASSOCIATED WITH Experimental Seizures (ortholog); melanoma (ortholog); Reperfusion Injury (ortholog); FOUND IN cell projection (ortholog); GABA-ergic synapse (ortholog); plasma membrane (ortholog) NW_004955429 13774455 13880690 + 102021032 AGCD01028769;AGCD01028770;GBDF01034697;XM_005387255 XP_005387312 MODEL 8893588 protein-coding LOC102007043 olfactory receptor 5W2-like NW_004955511 691641 692573 - 102007043 AGCD01066337;XM_005408207 XP_005408264 MODEL 8810642 protein-coding Smim13 small integral membrane protein 13 NW_004955465 3321886 3343467 - 102018701 AGCD01050374;AGCD01050375;GBCB01041194;XM_005398828 XP_005398885 MODEL 10070073 protein-coding LOC106149957 uncharacterized LOC106149957 NW_004955458 15204473 15214967 - 106149957 AGCD01047874;AGCD01047875;AGCD01047876;GBBH01193369;GBDK01117171;XM_013520901 XP_013376355 MODEL 8819082 protein-coding LOC102024511 disintegrin and metalloproteinase domain-containing protein 20 NW_004955552 2217959 2237548 - 102024511 AGCD01072806;GBDF01081593;XM_005412207;XM_005412208;XM_005412209 XP_005412264;XP_005412265;XP_005412266 MODEL 8728764 pseudo LOC102006671 nuclear FMR1 interacting protein 2-like NW_004955491 8637891 8639987 - 102006671 AGCD01060619 MODEL 9053040 protein-coding LOC102018844 neutrophil elastase ENCODES a protein that exhibits cytokine binding (ortholog); endopeptidase activity (ortholog); heparin binding (ortholog); INVOLVED IN acute inflammatory response to antigenic stimulus (ortholog); defense response to bacterium (ortholog); defense response to fungus (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); anthrax disease (ortholog); autosomal dominant severe congenital neutropenia (ortholog); FOUND IN azurophil granule (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955495 6964577 6967208 - 102018844 AGCD01062105;GBDF01239090;XM_005406018 XP_005406075 MODEL 8725117 protein-coding Rftn1 raftlin, lipid raft linker 1 ENCODES a protein that exhibits double-stranded RNA binding (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); dsRNA transport (ortholog); membrane raft assembly (ortholog); ASSOCIATED WITH glaucoma (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); membrane raft (ortholog) NW_004955430 8605057 8801187 - 102028668 AGCD01029390;AGCD01029391;AGCD01029392;AGCD01029393;GBDF01187691;GBDJ01316097;XM_013515694 XP_013371148 MODEL 8778741 protein-coding Engase endo-beta-N-acetylglucosaminidase ENCODES a protein that exhibits mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity (ortholog); INVOLVED IN protein deglycosylation (ortholog) NW_004955506 3647302 3658676 - 102025928 AGCD01065318;GBDJ01312297;XM_005407343;XM_013506115 XP_005407400;XP_013361569 MODEL 8935083 protein-coding Pter phosphotriesterase related ENCODES a protein that exhibits N-acetyltaurine hydrolase activity (ortholog); INVOLVED IN epithelial cell differentiation (ortholog); regulation of appetite (ortholog); taurine metabolic process (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Liver Neoplasms (ortholog); melanoma (ortholog); FOUND IN cytosol (ortholog) NW_004955429 11296833 11356082 - 102030449 AGCD01028686;AGCD01028687;GBDK01220368;XM_005386971;XM_013515555;XM_013515556;XM_013515557 XP_005387028;XP_013371009;XP_013371010;XP_013371011 MODEL 8813936 protein-coding LOC102023518 vomeronasal type-2 receptor 116-like NW_004955524 544031 559678 + 102023518 AGCD01068682;AGCD01068683;GBDF01056480;XM_013507186 XP_013362640 MODEL 8958941 ncrna LOC102027991 uncharacterized LOC102027991 NW_004955492 5319402 5331957 + 102027991 AGCD01060740;AGCD01060741;GBDF01249208;XR_264054 MODEL 10245662 protein-coding LOC106147115 uncharacterized LOC106147115 NW_004955520 1874728 1876712 + 106147115 AGCD01068064;GBDF01260482;GBDJ01219618;XM_013507027 XP_013362481 MODEL 8962200 protein-coding Snx24 sorting nexin 24 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog) NW_004955521 1006353 1126062 + 102021382 AGCD01068167;AGCD01068168;AGCD01068169;AGCD01068170;AGCD01068171;AGCD01068172;AGCD01068173;GBCB01022225;XM_013507082;XM_013507083;XM_013507084 XP_013362536;XP_013362537;XP_013362538 MODEL 8752654 protein-coding Tpgs1 tubulin polyglutamylase complex subunit 1 ENCODES a protein that exhibits microtubule binding (ortholog); protein-macromolecule adaptor activity (ortholog); tubulin binding (ortholog); INVOLVED IN adult behavior (ortholog); chemical synaptic transmission (ortholog); microtubule cytoskeleton organization (ortholog); FOUND IN centrosome (ortholog); microtubule (ortholog) NW_004955495 7181907 7189726 - 102024585 AGCD01062124;GBDF01187983;XM_005406039 XP_005406096 MODEL 9042158 protein-coding Btbd3 BTB domain containing 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cerebral cortex development (ortholog); dendrite morphogenesis (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955415 21588669 21602990 + 102027294 AGCD01016513;GBDF01221665;XM_005380880;XM_005380882;XM_013512365 XP_005380937;XP_005380939;XP_013367819 MODEL 8728162 protein-coding Sec31a SEC31 homolog A, COPII component ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); INVOLVED IN COPII-coated vesicle cargo loading (ortholog); response to calcium ion (ortholog); ASSOCIATED WITH diffuse large B-cell lymphoma (ortholog); Halperin-Birk syndrome (ortholog); FOUND IN COPII vesicle coat (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); cytoplasm (ortholog) NW_004955433 6830732 6891259 - 102008447 AGCD01031549;AGCD01031550;AGCD01031551;AGCD01031552;GBCQ01007447;XM_005388248;XM_005388249;XM_005388250;XM_005388251;XM_005388252;XM_005388253;XM_005388256;XM_013516167;XM_013516168;XM_013516169;XM_013516170;XM_013516171;XM_013516172 XP_005388305;XP_005388306;XP_005388307;XP_005388308;XP_005388309;XP_005388310;XP_005388313;XP_013371621;XP_013371622;XP_013371623;XP_013371624;XP_013371625;XP_013371626 MODEL 8785185 protein-coding Pdk4 pyruvate dehydrogenase kinase 4 ENCODES a protein that exhibits ATP binding (ortholog); protein kinase activity (ortholog); pyruvate dehydrogenase (acetyl-transferring) kinase activity (ortholog); INVOLVED IN cellular response to fatty acid (ortholog); cellular response to starvation (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Experimental Diabetes Mellitus (ortholog); hepatocellular carcinoma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955432 12169548 12182064 - 102018631 AGCD01030969;GBDJ01083740;XM_005388066 XP_005388123 MODEL 8865060 protein-coding Wdr41 WD repeat domain 41 ENCODES a protein that exhibits GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN regulation of autophagy (ortholog); FOUND IN cytoplasm (ortholog); guanyl-nucleotide exchange factor complex (ortholog) NW_004955425 23366130 23510897 + 102016494 AGCD01025845;AGCD01025846;GBDF01088944;XM_005386025;XM_013514857 XP_005386082;XP_013370311 MODEL 8802901 protein-coding Lin9 lin-9 DREAM MuvB core complex component FOUND IN nucleoplasm (ortholog) NW_004955489 431063 491729 - 102010701 AGCD01059804;AGCD01059805;AGCD01059806;GBDK01263599;XM_005404493;XM_013504504;XM_013504505 XP_005404550;XP_013359958;XP_013359959 MODEL 8968888 protein-coding Rxfp4 relaxin family peptide/INSL5 receptor 4 INVOLVED IN positive regulation of feeding behavior (ortholog) NW_004955545 2143832 2145939 + 102013548 AGCD01071886;XM_005411627 XP_005411684 MODEL 8813481 ncrna LOC102011190 uncharacterized LOC102011190 NW_004955413 27903491 27912153 + 102011190 AGCD01014537;GBDI01285497;XR_260120 MODEL 8844691 protein-coding Qng1 Q-nucleotide N-glycosylase 1 ENCODES a protein that exhibits queuosine nucleosidase activity (ortholog); INVOLVED IN nucleoside salvage (ortholog); FOUND IN cytosol (ortholog) NW_004955432 3273161 3284261 + 102006267 AGCD01030647;GBDF01126625;GBDF01126628;XM_013516079 XP_013371533 MODEL 8835064 protein-coding LOC102029023 butyrophilin subfamily 1 member A1-like NW_004955581 1024072 1051116 + 102029023 AGCD01075706;GBDI01087360;XM_013509718;XM_013509719;XM_013509720 XP_013365172;XP_013365173;XP_013365174 MODEL 9052250 protein-coding Rbm19 RNA binding motif protein 19 INVOLVED IN positive regulation of embryonic development (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955482 9930237 10032597 - 102019807 AGCD01057586;AGCD01057587;GBDI01262719;XM_005403230;XM_013503702 XP_005403287;XP_013359156 MODEL 9050973 pseudo LOC102005574 ATP-binding cassette sub-family F member 2-like NW_004955463 4656863 4661099 + 102005574 AGCD01049614 MODEL 8873412 ncrna LOC102027297 uncharacterized LOC102027297 NW_004955476 10169438 10177975 + 102027297 AGCD01055413;GBCQ01149226;XR_263636 MODEL 8710498 pseudo LOC102007044 nucleolar GTP-binding protein 2 pseudogene NW_004955430 12703634 12705804 - 102007044 AGCD01029509 MODEL 8997689 protein-coding Smim14 small integral membrane protein 14 INVOLVED IN blastocyst hatching (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955443 7762760 7828545 + 102024959 AGCD01038297;AGCD01038298;GBDF01009135;XM_005391976 XP_005392033 MODEL 39131737 snorna SNORA70 Small nucleolar RNA SNORA70 39133292 snrna U4 U4 spliceosomal RNA 8845421 protein-coding LOC102027993 olfactory receptor 4A47-like NW_004955422 70190 71107 + 102027993 AGCD01022393;XM_005384925 XP_005384982 MODEL 9018113 protein-coding Trim8 tripartite motif containing 8 ENCODES a protein that exhibits identical protein binding (ortholog); mitogen-activated protein kinase kinase kinase binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); canonical NF-kappaB signal transduction (ortholog); host-mediated suppression of symbiont invasion (ortholog); ASSOCIATED WITH electroclinical syndrome (ortholog); epilepsy (ortholog); Focal Segmental Glomerulosclerosis and Neurodevelopmental Syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955485 7784625 7798131 - 102013832 AGCD01058676;AGCD01058677;AGCD01058678;GBBH01035373;GBDK01003830;XM_005403830 XP_005403887 MODEL 10246385 ncrna LOC106148214 uncharacterized LOC106148214 NW_004955417 11244320 11249239 - 106148214 AGCD01018126;GBDI01285601;XR_001233458 MODEL 9028489 pseudo LOC102025964 condensin-2 complex subunit G2 pseudogene NW_004955450 6008349 6010451 - 102025964 AGCD01042517 MODEL 8803581 protein-coding LOC102011614 translation initiation factor IF-2-like NW_004955451 13182675 13184330 - 102011614 AGCD01043458;GBDK01206490;XM_005394257;XR_001235982 XP_005394314 MODEL 9030452 protein-coding Rit1 Ras like without CAAX 1 ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN Ras protein signal transduction (ortholog); ASSOCIATED WITH brain disease (ortholog); cardiofaciocutaneous syndrome (ortholog); cherubism (ortholog); FOUND IN plasma membrane (ortholog) NW_004955545 2089530 2099404 - 102011362 AGCD01071884;GBDK01092159;XM_005411618;XM_005411619;XM_005411622 XP_005411675;XP_005411676;XP_005411679 MODEL 8808855 protein-coding Prepl prolyl endopeptidase like ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN Golgi to plasma membrane protein transport (ortholog); regulation of synaptic vesicle exocytosis (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH congenital myasthenic syndrome (ortholog); congenital myasthenic syndrome 22 (ortholog); genetic disease (ortholog); FOUND IN cytoskeleton (ortholog); Golgi apparatus (ortholog); mitochondrion (ortholog) NW_004955441 11418299 11453889 - 102004977 AGCD01037107;AGCD01037108;AGCD01037109;GBBH01001037;XM_005390951;XM_005390952;XM_005390955;XM_005390957;XM_005390961;XM_013517570;XM_013517571;XM_013517572;XM_013517573;XM_013517574;XM_013517575;XM_013517576;XM_013517577 XP_005391008;XP_005391009;XP_005391012;XP_005391014;XP_005391018;XP_013373024;XP_013373025;XP_013373026;XP_013373027;XP_013373028;XP_013373029;XP_013373030;XP_013373031 MODEL 9060620 protein-coding Btbd6 BTB domain containing 6 NW_004955538 3494950 3496888 + 102005179 AGCD01071166;GBBH01033922;GBCE01001883;XM_005410859 XP_005410916 MODEL 8770324 protein-coding Plekha5 pleckstrin homology domain containing A5 ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN reproductive system development (ortholog); ASSOCIATED WITH BILATERAL CLEFT LIP (ortholog); cleft lip (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); postsynaptic density (ortholog) NW_004955413 15239070 15470137 + 102012418 AGCD01014067;AGCD01014068;AGCD01014069;AGCD01014070;AGCD01014071;AGCD01014072;AGCD01014073;GBBH01165630;GBDF01085078;XM_013511432;XM_013511433;XM_013511434;XM_013511435 XP_013366886;XP_013366887;XP_013366888;XP_013366889 MODEL 9051610 protein-coding Pcbp4 poly(rC) binding protein 4 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); RNA binding (ortholog); INVOLVED IN DNA damage response, signal transduction by p53 class mediator (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); negative regulation of DNA damage response, signal transduction by p53 class mediator (ortholog); PARTICIPATES IN iron homeostasis pathway; FOUND IN cytosol (ortholog) NW_004955532 3604720 3615112 - 102024048 AGCD01070289;AGCD01070290;GBDJ01187213;XM_005410335;XM_005410336;XM_005410337;XM_005410339 XP_005410392;XP_005410393;XP_005410394;XP_005410396 MODEL 8751388 protein-coding Rxra retinoid X receptor alpha ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA binding (ortholog); DNA binding domain binding (ortholog); INVOLVED IN axon regeneration (ortholog); camera-type eye development (ortholog); cardiac muscle cell proliferation (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH alcoholic cardiomyopathy (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); congenital heart disease (ortholog); FOUND IN axon (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955513 3313544 3386544 + 102024492 AGCD01066901;GBDJ01079793;XM_005408467;XM_013506714 XP_005408524;XP_013362168 MODEL 8993621 ncrna LOC102018845 uncharacterized LOC102018845 NW_004955499 7438345 7462684 - 102018845 AGCD01063587;GBCE01090104;XR_001231453;XR_264222 MODEL 8965988 ncrna LOC102010413 uncharacterized LOC102010413 NW_004955440 18515406 18523978 + 102010413 AGCD01036611;AGCD01036612;GBDI01160681;XR_262044 MODEL 8866999 protein-coding Rae1 ribonucleic acid export 1 ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN regulation of mitotic spindle organization (ortholog); FOUND IN fibrillar center (ortholog); mitotic spindle pole (ortholog); nuclear envelope (ortholog) NW_004955445 2069791 2084210 - 102005190 AGCD01039350;GBCE01074921;XM_005392255 XP_005392312 MODEL 8879374 protein-coding LOC102006674 ATP-binding cassette sub-family A member 3-like NW_004955493 488799 638781 + 102006674 AGCD01060854;AGCD01060855;AGCD01060856;AGCD01060857;AGCD01060858;GBDF01290732;XM_005405051;XM_005405052;XM_013504904;XM_013504905;XM_013504906;XM_013504907;XM_013504908 XP_005405108;XP_005405109;XP_013360358;XP_013360359;XP_013360360;XP_013360361;XP_013360362 MODEL 8849562 protein-coding Enho energy homeostasis associated ENCODES a protein that exhibits hormone activity (ortholog); INVOLVED IN energy homeostasis (ortholog); positive regulation of Notch signaling pathway (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog) NW_004955472 1597488 1599274 + 102028290 AGCD01053403;GBCB01042932;GBDI01326897;XM_005401075 XP_005401132 MODEL 8834217 pseudo LOC102028650 male-specific lethal 3 homolog pseudogene NW_004955495 5398779 5400822 - 102028650 AGCD01062002;XM_005405861 MODEL 8801385 protein-coding Slc17a7 solute carrier family 17 member 7 ENCODES a protein that exhibits chloride channel activity (ortholog); extracellularly glutamate-gated chloride channel activity (ortholog); L-glutamate transmembrane transporter activity (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); chloride transport (ortholog); excitatory postsynaptic potential (ortholog); ASSOCIATED WITH learning disability (ortholog); Memory Disorders (ortholog); sciatic neuropathy (ortholog); FOUND IN cerebellar mossy fiber (ortholog); excitatory synapse (ortholog); membrane (ortholog) NW_004955559 1399182 1409074 + 102017170 AGCD01073644;GBDF01145535;XM_005412884 XP_005412941 MODEL 8862196 protein-coding LOC102008527 olfactory receptor 52N4-like NW_004955414 21703835 21704818 + 102008527 AGCD01015429;XM_013511734 XP_013367188 MODEL 9062926 pseudo LOC102009651 synaptonemal complex protein 3-like NW_004955437 1319326 1320146 - 102009651 AGCD01034204 MODEL 8743051 protein-coding Setd7 SET domain containing 7, histone lysine methyltransferase ENCODES a protein that exhibits chromatin binding (ortholog); histone H3 methyltransferase activity (ortholog); histone H3K4 monomethyltransferase activity (ortholog); INVOLVED IN chromatin organization (ortholog); DNA damage response (ortholog); heterochromatin organization (ortholog); PARTICIPATES IN carnitine biosynthetic pathway; histone modification pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH cognitive disorder (ortholog); extrahepatic cholestasis (ortholog); fetal alcohol spectrum disorder (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog) NW_004955428 4131431 4178250 + 102017588 AGCD01027667;AGCD01027668;GBCE01001559;XM_005386687 XP_005386744 MODEL 8804737 protein-coding Smim15 small integral membrane protein 15 NW_004955446 7335295 7341209 + 102028480 AGCD01040112;GBDI01067814;XM_005392648;XM_005392649;XM_005392650;XM_005392651 XP_005392705;XP_005392706;XP_005392707;XP_005392708 MODEL 8746465 protein-coding LOC102017688 olfactory receptor 8K3-like NW_004955511 1324682 1325641 + 102017688 AGCD01066365;XM_005408230 XP_005408287 MODEL 8700206 pseudo LOC102030444 nucleolar RNA helicase 2 pseudogene NW_004955424 22944390 22945553 + 102030444 AGCD01024995 MODEL 8956722 protein-coding Ppil6 peptidylprolyl isomerase like 6 ENCODES a protein that exhibits peptidyl-prolyl cis-trans isomerase activity (ortholog) NW_004955411 34449508 34481370 - 102018067 AGCD01012401;GBDI01024216;XM_005377868;XM_005377869;XM_005377870;XM_005377871;XM_005377872;XM_005377873;XM_005377874;XM_013510822;XM_013510823 XP_005377925;XP_005377926;XP_005377927;XP_005377928;XP_005377929;XP_005377930;XP_005377931;XP_013366276;XP_013366277 MODEL 8953266 protein-coding Snx25 sorting nexin 25 ENCODES a protein that exhibits type I transforming growth factor beta receptor binding (ortholog); INVOLVED IN negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); receptor catabolic process (ortholog); FOUND IN endosome (ortholog) NW_004955403 23678301 23787256 - 102028603 AGCD01002250;AGCD01002251;AGCD01002252;AGCD01002253;AGCD01002254;GBDK01250049;XM_005373470;XM_013512963;XM_013512965 XP_005373527;XP_013368417;XP_013368419 MODEL 8775457 protein-coding LOC102026322 small ubiquitin-related modifier 2-like NW_004955481 2614383 2622230 + 102026322 AGCD01056877;XM_013503345 XP_013358799 MODEL 9009521 protein-coding Sec31b SEC31 homolog B, COPII component FOUND IN cytosol (ortholog); vesicle coat (ortholog) NW_004955485 9615879 9655826 + 102008860 AGCD01058775;AGCD01058776;AGCD01058777;GBDI01185507;XM_005403906;XM_005403908;XM_005403909;XM_005403910;XM_005403911;XM_013504055;XM_013504057;XM_013504058;XM_013504059;XM_013504060 XP_005403963;XP_005403965;XP_005403966;XP_005403967;XP_005403968;XP_013359509;XP_013359511;XP_013359512;XP_013359513;XP_013359514 MODEL 8917974 protein-coding Ticam2 toll like receptor adaptor molecule 2 ENCODES a protein that exhibits molecular adaptor activity (ortholog); phospholipid binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); defense response to virus (ortholog); negative regulation of chemokine (C-C motif) ligand 5 production (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; Toll-like receptor signaling pathway; ASSOCIATED WITH Brain Injuries (ortholog); Coronavirus infectious disease (ortholog); severe acute respiratory syndrome (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); endoplasmic reticulum (ortholog) NW_004955411 31010373 31042321 - 102003848 AGCD01012265;GBDJ01125148;XM_013510720 XP_013366174 MODEL 8702178 ncrna LOC102003807 uncharacterized LOC102003807 NW_004955546 1036841 1042659 - 102003807 AGCD01072038;GBDF01208163;XR_264887 MODEL 8818651 protein-coding Prrg2 proline rich and Gla domain 2 FOUND IN plasma membrane (ortholog) NW_004955559 1279601 1287182 - 102012254 AGCD01073639;GBDK01142745;XM_005412865;XM_013508986;XM_013508987;XM_013508988 XP_005412922;XP_013364440;XP_013364441;XP_013364442 MODEL 8967426 ncrna LOC102011192 uncharacterized LOC102011192 NW_004955469 9744913 9758948 + 102011192 AGCD01052516;GBCB01088434;XR_263445 MODEL 9051365 protein-coding Rftn2 raftlin family member 2 INVOLVED IN dsRNA transport (ortholog); response to exogenous dsRNA (ortholog) NW_004955403 2982753 3030594 + 102013674 AGCD01001744;AGCD01001745;GBDF01055374;XM_005373263;XR_001233175 XP_005373320 MODEL 9024338 protein-coding LOC102021771 vomeronasal type-1 receptor 4-like NW_004955421 22001278 22002312 + 102021771 AGCD01022127;XM_005383835 XP_005383892 MODEL 8852726 protein-coding Ptf1a pancreas associated transcription factor 1a ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); cell differentiation (ortholog); cell fate commitment (ortholog); ASSOCIATED WITH cerebellar disease (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Decreased Urinary Activity of Kallikrein (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955429 5807804 5809522 - 102011348 AGCD01028536;AGCD01028537;GBDF01208599;XM_005387232 XP_005387289 MODEL 8926822 ncrna LOC102015808 uncharacterized LOC102015808 NW_004955408 11586604 11635608 - 102015808 AGCD01008312;AGCD01008313;AGCD01008314;XR_259679 MODEL 10158841 ncrna LOC106147116 uncharacterized LOC106147116 NW_004955520 3521373 3522994 - 106147116 AGCD01068105;GBDI01078833;XR_001231871 MODEL 8974109 protein-coding Tpgs2 tubulin polyglutamylase complex subunit 2 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN microtubule cytoskeleton organization (ortholog); FOUND IN microtubule (ortholog) NW_004955402 23286950 23319207 - 102015678 AGCD01000621;GBDJ01041805;XM_005372833;XM_005372835;XM_005372836;XM_005372837;XM_005372838 XP_005372890;XP_005372892;XP_005372893;XP_005372894;XP_005372895 MODEL 39133294 snrna U4 U4 spliceosomal RNA 8745001 protein-coding Slc6a12 solute carrier family 6 member 12 ENCODES a protein that exhibits gamma-aminobutyric acid:sodium:chloride symporter activity (ortholog); glycine betaine:sodium:chloride symporter activity (ortholog); monocarboxylic acid transmembrane transporter activity (ortholog); INVOLVED IN cellular hyperosmotic response (ortholog); gamma-aminobutyric acid transport (ortholog); glycine betaine transport (ortholog); ASSOCIATED WITH Neoplasm Invasiveness (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955454 6946486 6970247 + 102017095 AGCD01045274;GBDI01091148;XM_005396021;XM_005396022;XM_005396023;XM_005396024;XM_005396025;XM_005396026;XM_005396027;XM_013520166 XP_005396078;XP_005396079;XP_005396080;XP_005396081;XP_005396082;XP_005396083;XP_005396084;XP_013375620 MODEL 8935392 protein-coding LOC102019275 histone H2A type 1 NW_004955483 901347 913474 - 102019275 AGCD01057637;GBCQ01010632;XM_005403303;XM_005403304 XP_005403360;XP_005403361 MODEL 10093347 ncrna LOC106149958 uncharacterized LOC106149958 NW_004955458 3546091 3548041 + 106149958 AGCD01047317;XR_001236452 MODEL 8826508 protein-coding Pdlim1 PDZ and LIM domain 1 ENCODES a protein that exhibits actin binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); establishment or maintenance of actin cytoskeleton polarity (ortholog); fibroblast migration (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog) NW_004955507 1499223 1525924 - 102007254 AGCD01065563;GBCB01057305;XM_005407537 XP_005407594 MODEL 8759353 pseudo LOC102024514 small nuclear ribonucleoprotein Sm D2 pseudogene NW_004955560 616311 619707 + 102024514 AGCD01073733;XM_005412991 MODEL 10318577 ncrna LOC106148215 uncharacterized LOC106148215 NW_004955417 27439534 27442201 + 106148215 AGCD01018556;GBDI01128985;XR_001233461 MODEL 10178923 pseudo LOC106147117 60S ribosomal protein L21 pseudogene NW_004955520 1013203 1014582 - 106147117 AGCD01068040 MODEL 8943982 protein-coding Qpct glutaminyl-peptide cyclotransferase ENCODES a protein that exhibits glutaminyl-peptide cyclotransferase activity (ortholog); zinc ion binding (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); melanoma (ortholog) NW_004955441 5138477 5168056 + 102006286 AGCD01036870;AGCD01036871;GBCE01029735;XM_005390874;XM_013517539 XP_005390931;XP_013372993 MODEL 8987956 ncrna LOC102025965 uncharacterized LOC102025965 NW_004955613 264675 272999 + 102025965 AGCD01077206;XR_001232578;XR_265171 MODEL 8779976 ncrna LOC102012811 uncharacterized LOC102012811 NW_004955559 2195047 2205058 - 102012811 AGCD01073700;AGCD01073701;GBBH01056100;XR_265004 MODEL 8777040 pseudo LOC102011616 transcription termination factor 2 pseudogene NW_004955403 54518608 54521373 - 102011616 AGCD01003099 MODEL 8811877 protein-coding LOC102005576 histone H2B NW_004955465 13104644 13110046 - 102005576 AGCD01050585;GBDF01248769;XM_005398947 XP_005399004 MODEL 8904318 protein-coding Ticrr TOPBP1 interacting checkpoint and replication regulator ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN regulation of DNA-templated DNA replication initiation (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); COVID-19 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955416 15572789 15615556 - 102027971 AGCD01017335;AGCD01017336;GBDF01278969;XM_005381551;XM_013512555;XM_013512556 XP_005381608;XP_013368009;XP_013368010 MODEL 39131738 snorna SNORA70 Small nucleolar RNA SNORA70 8889750 protein-coding LOC102010423 olfactory receptor 7G2-like NW_004955563 285695 286633 - 102010423 AGCD01074059;XM_013509134 XP_013364588 MODEL 8708340 protein-coding Pcca propionyl-CoA carboxylase subunit alpha ENCODES a protein that exhibits enzyme binding (ortholog); propionyl-CoA carboxylase activity (ortholog); INVOLVED IN succinyl-CoA biosynthetic process (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); genetic disease (ortholog); pontocerebellar hypoplasia type 2D (ortholog); FOUND IN catalytic complex (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955404 10317640 10719148 - 102009676 AGCD01003378;AGCD01003379;AGCD01003380;AGCD01003381;AGCD01003382;AGCD01003383;AGCD01003384;AGCD01003385;AGCD01003386;AGCD01003387;AGCD01003388;AGCD01003389;AGCD01003390;AGCD01003391;GBCE01030421;XM_005374053;XM_005374054;XM_005374058;XM_013516015 XP_005374110;XP_005374111;XP_005374115;XP_013371469 MODEL 8760364 protein-coding Btbd7 BTB domain containing 7 INVOLVED IN regulation of branching involved in salivary gland morphogenesis (ortholog); FOUND IN nucleus (ortholog) NW_004955438 15345678 15445705 - 102004643 AGCD01035365;AGCD01035366;AGCD01035367;GBCB01121971;XM_005390344;XM_013517216;XM_013517217;XM_013517218 XP_005390401;XP_013372670;XP_013372671;XP_013372672 MODEL 8813480 pseudo LOC102010817 60S ribosomal protein L9 pseudogene NW_004955424 4777949 4778494 + 102010817 AGCD01024365 MODEL 8972223 protein-coding Raet1e retinoic acid early transcript 1E ENCODES a protein that exhibits natural killer cell lectin-like receptor binding (ortholog); INVOLVED IN natural killer cell mediated cytotoxicity (ortholog); positive regulation of natural killer cell mediated cytotoxicity (ortholog); T cell mediated cytotoxicity (ortholog); FOUND IN cytosol (ortholog); focal adhesion (ortholog); membrane (ortholog) NW_004955439 11413978 11420902 + 102007593 AGCD01035906;GBDF01014346;XM_013517302 XP_013372756 MODEL 8722159 protein-coding Enkd1 enkurin domain containing 1 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); microtubule binding (ortholog); INVOLVED IN establishment of mitotic spindle orientation (ortholog); motile cilium assembly (ortholog); non-motile cilium assembly (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955484 9015744 9019781 + 102025124 AGCD01058403;GBDJ01311527;XM_005403628;XM_005403629 XP_005403685;XP_005403686 MODEL 8796599 pseudo LOC102028000 heterogeneous nuclear ribonucleoprotein A1-like NW_004955425 25732716 25734002 - 102028000 AGCD01025930 MODEL 8713186 ncrna LOC102006677 uncharacterized LOC102006677 NW_004955422 22593229 22599979 + 102006677 AGCD01023163;GBDF01074983;XR_260905 MODEL 8830025 ncrna LOC102017696 uncharacterized LOC102017696 NW_004955435 17195753 17201846 - 102017696 AGCD01033350;GBDF01052175;XR_001234878;XR_261720 MODEL 9035347 protein-coding Setd9 SET domain containing 9 ASSOCIATED WITH Ependymomas (ortholog); FOUND IN mitochondrion (ortholog) NW_004955446 10994388 11004034 - 102013459 AGCD01040194;GBDF01050852;GBDF01050854;XM_013518469 XP_013373923 MODEL 8725053 pseudo LOC102026323 serine/threonine-protein kinase Kist pseudogene NW_004955418 11768644 11789023 - 102026323 AGCD01019013 MODEL 8890168 pseudo LOC102027300 translationally-controlled tumor protein pseudogene NW_004955416 10648108 10648744 + 102027300 AGCD01017150 MODEL 8850080 pseudo LOC102019280 protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 pseudogene NW_004955420 1690583 1691948 - 102019280 AGCD01020576 MODEL 8983508 protein-coding Prex1 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 1 ENCODES a protein that exhibits phospholipid binding (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); neutrophil chemotaxis (ortholog); positive regulation of cell adhesion (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rho/Rac/Cdc42 mediated signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Lymphatic Metastasis (ortholog); prostate cancer (ortholog); FOUND IN cytosol (ortholog); dendritic shaft (ortholog); growth cone (ortholog) NW_004955445 9229775 9401277 + 102028032 AGCD01039626;GBDI01168746;GBDI01168750;XM_013518315 XP_013373769 MODEL 8892214 protein-coding Rbm20 RNA binding motif protein 20 ENCODES a protein that exhibits pre-mRNA intronic binding (ortholog); RNA binding (ortholog); splicing factor binding (ortholog); INVOLVED IN heart formation (ortholog); negative regulation of mRNA splicing, via spliceosome (ortholog); positive regulation of RNA splicing (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrial fibrillation (ortholog); cardiac arrest (ortholog); FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); nucleus (ortholog) NW_004955485 590094 769604 - 102014785 AGCD01058456;AGCD01058457;GBCB01023246;XM_005403751;XM_005403752;XM_005403753;XM_013504116 XP_005403808;XP_005403809;XP_005403810;XP_013359570 MODEL 8988606 protein-coding Rit2 Ras like without CAAX 2 ENCODES a protein that exhibits calmodulin binding (ortholog); chromatin binding (ortholog); GTP binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); intracellular signal transduction (ortholog); maintenance of protein location in cell (ortholog); ASSOCIATED WITH acute myocardial infarction (ortholog); FOUND IN cell body (ortholog); cytoplasm (ortholog); dendritic tree (ortholog) NW_004955402 28737882 29137006 - 102021405 AGCD01000728;AGCD01000729;AGCD01000730;AGCD01000731;AGCD01000732;AGCD01000733;AGCD01000734;AGCD01000735;AGCD01000736;AGCD01000737;AGCD01000738;GBDI01042722;XM_005372848;XM_005372849 XP_005372905;XP_005372906 MODEL 8786835 pseudo LOC102028652 60S ribosomal protein L39 pseudogene NW_004955495 6379385 6379877 - 102028652 AGCD01062076 MODEL 8906021 ncrna LOC102018850 uncharacterized LOC102018850 NW_004955427 23573541 23591628 - 102018850 AGCD01027486;XR_261286 MODEL 8861163 pseudo LOC102021775 cell division cycle 5-like protein NW_004955493 8532315 8537845 + 102021775 AGCD01061309 MODEL 8882384 protein-coding Rxrb retinoid X receptor beta ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN cardiac muscle cell proliferation (ortholog); cellular response to retinoic acid (ortholog); in utero embryonic development (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955437 1767833 1774401 - 102028128 AGCD01034233;GBCE01004573;XM_005389474;XM_005389475;XM_005389477 XP_005389531;XP_005389532;XP_005389534 MODEL 41410893 protein-coding LINC00672 long intergenic non-protein coding RNA 672 8872215 protein-coding Wdr43 WD repeat domain 43 ENCODES a protein that exhibits RNA polymerase II complex binding (ortholog); transcription elongation factor activity (ortholog); INVOLVED IN positive regulation of rRNA processing (ortholog); positive regulation of transcription by RNA polymerase I (ortholog); regulation of stem cell population maintenance (ortholog); FOUND IN chromatin (ortholog); fibrillar center (ortholog); nucleolus (ortholog) NW_004955469 10777332 10835577 + 102016256 AGCD01052550;AGCD01052551;GBDF01226152;XM_005400538;XM_005400539 XP_005400595;XP_005400596 MODEL 8818566 pseudo LOC102008528 density-regulated protein pseudogene NW_004955415 15527746 15528569 + 102008528 AGCD01016348 MODEL 9040257 pseudo LOC102009655 dynein assembly factor 3, axonemal homolog NW_004955441 695019 709803 - 102009655 AGCD01036728;AGCD01036729;AGCD01036730;AGCD01036731 MODEL 8763361 protein-coding LOC102029027 prothymosin alpha NW_004955402 63296977 63297912 + 102029027 AGCD01001668;XM_005373125;XM_013503129 XP_005373182;XP_013358583 MODEL 8812762 protein-coding Smim17 small integral membrane protein 17 NW_004955567 248113 256309 - 102011254 AGCD01074392;AGCD01074393;XM_005413284 XP_005413341 MODEL 8743915 pseudo LOC102030445 UAP56-interacting factor pseudogene NW_004955502 3931860 3937291 - 102030445 AGCD01064323 MODEL 8968262 protein-coding Tph1 tryptophan hydroxylase 1 ENCODES a protein that exhibits tryptophan 5-monooxygenase activity (ortholog); INVOLVED IN bone remodeling (ortholog); circadian rhythm (ortholog); mammary gland alveolus development (ortholog); PARTICIPATES IN tryptophan metabolic pathway; ASSOCIATED WITH alcohol use disorder (ortholog); Alzheimer's disease (ortholog); attention deficit hyperactivity disorder (ortholog); FOUND IN cytoplasm (ortholog) NW_004955414 32803417 32828682 - 102014235 AGCD01015783;XM_005380396;XM_013511753;XM_013511754 XP_005380453;XP_013367207;XP_013367208 MODEL 8855346 protein-coding LOC102010819 lariat debranching enzyme NW_004955501 832433 846485 + 102010819 AGCD01064041;AGCD01064042;GBDF01305392;XM_005406750 XP_005406807 MODEL 8984424 pseudo LOC102007046 protein SET-like NW_004955515 1700873 1701654 - 102007046 AGCD01067233 MODEL 10193911 ncrna LOC106149959 uncharacterized LOC106149959 NW_004955458 5329029 5330856 - 106149959 AGCD01047476;GBDI01105749;XR_001236453 MODEL 8933673 protein-coding LOC102017700 olfactory receptor 2D2-like NW_004955537 2595360 2596310 + 102017700 AGCD01070931;XM_005410720 XP_005410777 MODEL 10239054 ncrna LOC106147118 uncharacterized LOC106147118 NW_004955520 1007104 1008125 + 106147118 AGCD01068040;GBDF01237317;XR_001231872 MODEL 9060975 protein-coding Plekha6 pleckstrin homology domain containing A6 NW_004955406 40066260 40200629 - 102020415 AGCD01006653;AGCD01006654;GBDK01395763;XM_005375292;XM_005375295;XM_005375306;XM_013522685;XM_013522688;XM_013522690;XM_013522693;XM_013522695;XM_013522700;XM_013522703;XM_013522704;XM_013522706;XM_013522707;XM_013522709;XM_013522711;XM_013522720;XM_013522725;XM_013522731;XM_013522738;XM_013522746;XM_013522750;XM_013522753;XM_013522759;XR_001237018 XP_005375349;XP_005375352;XP_005375363;XP_013378139;XP_013378142;XP_013378144;XP_013378147;XP_013378149;XP_013378154;XP_013378157;XP_013378158;XP_013378160;XP_013378161;XP_013378163;XP_013378165;XP_013378174;XP_013378179;XP_013378185;XP_013378192;XP_013378200;XP_013378204;XP_013378207;XP_013378213 MODEL 9059602 protein-coding Rfwd3 ring finger and WD repeat domain 3 ENCODES a protein that exhibits MDM2/MDM4 family protein binding (ortholog); p53 binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN DNA damage response (ortholog); double-strand break repair via homologous recombination (ortholog); interstrand cross-link repair (ortholog); ASSOCIATED WITH Fanconi anemia (ortholog); Fanconi anemia complementation group W (ortholog); Testicular Germ Cell Tumor (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955484 2824057 2857321 + 102025010 AGCD01058136;AGCD01058137;AGCD01058138;AGCD01058139;AGCD01058140;AGCD01058141;AGCD01058142;GBDJ01316140;XM_005403457;XM_005403458;XM_005403460;XM_005403461;XM_005403462;XM_013503864 XP_005403514;XP_005403515;XP_005403517;XP_005403518;XP_005403519;XP_013359318 MODEL 8756996 protein-coding Slc17a8 solute carrier family 17 member 8 ENCODES a protein that exhibits chloride channel activity (ortholog); L-glutamate uniporter activity (ortholog); sodium:phosphate symporter activity (ortholog); INVOLVED IN cochlea development (ortholog); L-glutamate import (ortholog); L-glutamate transmembrane transport (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness 25 (ortholog); autosomal recessive nonsyndromic deafness 9 (ortholog); cochlear disease (ortholog); FOUND IN apical dendrite (ortholog); axon terminus (ortholog); basal dendrite (ortholog) NW_004955405 36063688 36115312 + 102021302 AGCD01005409;XM_005374531;XM_005374532 XP_005374588;XP_005374589 MODEL 8767783 ncrna LOC102015809 uncharacterized LOC102015809 NW_004955408 23149825 23157092 - 102015809 AGCD01008584;GBBH01141898;XR_001232380;XR_259702 MODEL 9041564 protein-coding LOC102005577 uncharacterized LOC102005577 NW_004955465 13237704 13244781 + 102005577 AGCD01050593;GBCE01177470;XM_013521808 XP_013377262 MODEL 8905044 pseudo LOC102010427 signal recognition particle subunit SRP72-like NW_004955569 166179 187432 - 102010427 AGCD01074565;AGCD01074566 MODEL 8881358 protein-coding Trim9 tripartite motif containing 9 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein homodimerization activity (ortholog); SNARE binding (ortholog); INVOLVED IN negative regulation of calcium ion-dependent exocytosis (ortholog); negative regulation of dense core granule exocytosis (ortholog); negative regulation of SNARE complex assembly (ortholog); FOUND IN cytoplasm (ortholog); cytoskeleton (ortholog); dendrite (ortholog) NW_004955409 11837717 11946718 + 102015811 AGCD01009529;AGCD01009530;GBDF01209690;XM_005376796;XM_005376797;XM_005376798;XM_005376799;XM_005376802;XM_013510331 XP_005376853;XP_005376854;XP_005376855;XP_005376856;XP_005376859;XP_013365785 MODEL 8772337 protein-coding Snx27 sorting nexin 27 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); ionotropic glutamate receptor binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN cellular response to nerve growth factor stimulus (ortholog); endocytic recycling (ortholog); endosomal transport (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH Disease Progression (ortholog); Dravet syndrome (ortholog); early myoclonic encephalopathy (ortholog); FOUND IN early endosome (ortholog); early endosome membrane (ortholog); endosome (ortholog) NW_004955589 719892 799367 - 102019344 AGCD01076181;AGCD01076182;AGCD01076183;GBCQ01062668;XM_005414566;XM_005414567;XM_005414568 XP_005414623;XP_005414624;XP_005414625 MODEL 8788150 protein-coding LOC102028003 glycophorin-A NW_004955428 237913 265303 - 102028003 AGCD01027569;AGCD01027570;GBBH01207894;XM_005386628;XM_013515262 XP_005386685;XP_013370716 MODEL 8734564 pseudo LOC102023519 microtubule-associated protein 9-like NW_004955435 7164130 7166416 + 102023519 AGCD01032948 MODEL 8970439 pseudo LOC102024515 ORM1-like protein 1 pseudogene NW_004955446 6139115 6140325 + 102024515 AGCD01040088 MODEL 9004427 ncrna LOC102003811 uncharacterized LOC102003811 NW_004955442 15113086 15113646 + 102003811 AGCD01037859;GBBH01035320;XR_262150 MODEL 10201651 ncrna LOC106148216 uncharacterized LOC106148216 NW_004955417 29230525 29246743 - 106148216 AGCD01018595;GBDF01074732;XR_001233462 MODEL 8954642 protein-coding Qpctl glutaminyl-peptide cyclotransferase like ENCODES a protein that exhibits glutaminyl-peptide cyclotransferase activity (ortholog); zinc ion binding (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955574 165031 172713 + 102017522 AGCD01075088;GBDF01222689;XM_005413799;XM_013509513;XM_013509514 XP_005413856;XP_013364967;XP_013364968 MODEL 8898079 pseudo LOC102011619 60S ribosomal protein L6-like NW_004955405 15379752 15381035 + 102011619 AGCD01004944 MODEL 8817610 protein-coding LOC102027304 40S ribosomal protein SA-like NW_004955418 14071653 14086076 + 102027304 AGCD01019063;XM_013512876 XP_013368330 MODEL 39131739 snorna SNORA70 Small nucleolar RNA SNORA70 9064460 protein-coding Rbm22 RNA binding motif protein 22 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); pre-mRNA binding (ortholog); U6 snRNA binding (ortholog); INVOLVED IN cellular response to xenobiotic stimulus (ortholog); mRNA cis splicing, via spliceosome (ortholog); positive regulation of protein export from nucleus (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955415 3895272 3905801 + 102013500 AGCD01015958;GBDF01084793;XM_005380568 XP_005380625 MODEL 8802575 protein-coding LOC102028653 olfactory receptor 10H1-like NW_004955495 7391238 7392188 - 102028653 AGCD01062132;XM_013505183 XP_013360637 MODEL 8757906 protein-coding Sec61a1 SEC61 translocon subunit alpha 1 ENCODES a protein that exhibits calcium channel activity (ortholog); ribosome binding (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN cotranslational protein targeting to membrane (ortholog); endoplasmic reticulum organization (ortholog); post-translational protein targeting to endoplasmic reticulum membrane (ortholog); ASSOCIATED WITH autosomal dominant tubulointerstitial kidney disease 5 (ortholog); Common Variable Immunodeficiency 15 (ortholog); Craniofacial Abnormalities (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955429 15637461 15652556 - 102026894 AGCD01028811;GBDF01084562;XM_005387046 XP_005387103 MODEL 8778506 protein-coding Pccb propionyl-CoA carboxylase subunit beta ENCODES a protein that exhibits propionyl-CoA carboxylase activity (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN catalytic complex (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955501 2474330 2563107 - 102018112 AGCD01064082;AGCD01064083;AGCD01064084;AGCD01064085;AGCD01064086;GBCQ01010782;XM_005406779 XP_005406836 MODEL 10312303 ncrna LOC106147120 uncharacterized LOC106147120 NW_004955520 1165597 1168792 - 106147120 AGCD01068046;AGCD01068047;GBDI01376278;XR_001231873 MODEL 8844016 protein-coding Btbd9 BTB domain containing 9 INVOLVED IN adult locomotory behavior (ortholog); circadian behavior (ortholog); circadian sleep/wake cycle, non-REM sleep (ortholog); ASSOCIATED WITH intellectual disability (ortholog); restless legs syndrome (ortholog); FOUND IN glutamatergic synapse (ortholog) NW_004955437 4765234 5145033 + 102015147 AGCD01034370;AGCD01034371;AGCD01034372;AGCD01034373;AGCD01034374;AGCD01034375;AGCD01034376;AGCD01034377;AGCD01034378;GBDF01043958;XM_005390124;XM_013516988 XP_005390181;XP_013372442 MODEL 8946897 protein-coding Enkur enkurin, TRPC channel interacting protein ENCODES a protein that exhibits calmodulin binding (ortholog); INVOLVED IN establishment of left/right asymmetry (ortholog); flagellated sperm motility (ortholog); FOUND IN 9+0 motile cilium (ortholog); 9+2 motile cilium (ortholog); acrosomal vesicle (ortholog) NW_004955429 4182507 4203275 + 102007452 AGCD01028483;GBDF01085329;XM_005386899;XM_005386900 XP_005386956;XP_005386957 MODEL 8743364 pseudo LOC102029029 E3 ubiquitin-protein ligase RNF6 pseudogene NW_004955402 34657944 34659539 + 102029029 AGCD01000868 MODEL 8892781 protein-coding Prrg3 proline rich and Gla domain 3 NW_004955498 7217550 7227685 + 102008552 AGCD01063146;GBCE01183264;XM_005406442;XM_005406443 XP_005406499;XP_005406500 MODEL 8836712 pseudo LOC102005578 Y+L amino acid transporter 2 pseudogene NW_004955466 2383953 2385889 - 102005578 AGCD01050736 MODEL 9065643 protein-coding Pdlim2 PDZ and LIM domain 2 ENCODES a protein that exhibits alpha-actinin binding (ortholog); filamin binding (ortholog); muscle alpha-actinin binding (ortholog); INVOLVED IN protein catabolic process (ortholog); FOUND IN actin cytoskeleton (ortholog); cortical actin cytoskeleton (ortholog); cytoplasm (ortholog) NW_004955403 46006255 46019865 + 102011939 AGCD01002847;AGCD01002848;GBDK01117944;XM_005373679;XM_005373680;XM_005373681;XM_013513882 XP_005373736;XP_005373737;XP_005373738;XP_013369336 MODEL 8700766 protein-coding Smim18 small integral membrane protein 18 NW_004955463 7057648 7071593 + 102024774 AGCD01049709;AGCD01049710;GBBH01116730;XM_005398367;XM_013521494;XM_013521495 XP_005398424;XP_013376948;XP_013376949 MODEL 8972832 protein-coding LOC102026326 probable RNA-binding protein 46 NW_004955419 14296848 14299272 - 102026326 AGCD01020015;XM_005382687 XP_005382744 MODEL 8881009 protein-coding LOC102030446 protein ARMCX6 NW_004955503 7698223 7701116 - 102030446 AGCD01064799;GBDJ01236161;XM_005406969;XM_013505857;XM_013505858;XM_013505859 XP_005407026;XP_013361311;XP_013361312;XP_013361313 MODEL 8902892 ncrna LOC102012812 uncharacterized LOC102012812 NW_004955446 2324596 2337167 - 102012812 AGCD01039981;GBDF01040343;XR_001235685 MODEL 8811702 protein-coding LOC102025966 nucleoside diphosphate kinase A NW_004955451 10737976 10744261 - 102025966 AGCD01043330;GBDF01082596;GBDF01082598;XM_013519278 XP_013374732 MODEL 9000283 protein-coding Setdb1 SET domain bifurcated histone lysine methyltransferase 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); histone H3K14ac reader activity (ortholog); INVOLVED IN bone development (ortholog); DNA methylation-dependent constitutive heterochromatin formation (ortholog); gene expression (ortholog); PARTICIPATES IN histone modification pathway; homocysteine metabolic pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); high grade glioma (ortholog); Huntington's disease (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955588 290497 338438 + 102017932 AGCD01076102;AGCD01076103;AGCD01076104;AGCD01076105;GBDF01085935;XM_005414466;XM_005414467;XM_005414468;XM_005414469;XM_013509910;XM_013509911 XP_005414523;XP_005414524;XP_005414525;XP_005414526;XP_013365364;XP_013365365 MODEL 8865295 ncrna LOC102024517 uncharacterized LOC102024517 NW_004955447 14334061 14335005 - 102024517 AGCD01041000;GBDF01124752;XR_262426 MODEL 8951421 protein-coding Ptgdr prostaglandin D2 receptor ENCODES a protein that exhibits prostaglandin D receptor activity (ortholog); prostaglandin J receptor activity (ortholog); INVOLVED IN adenosine metabolic process (ortholog); cellular response to prostaglandin D stimulus (ortholog); inflammatory response (ortholog); PARTICIPATES IN eicosanoid signaling pathway; prostaglandin D2 signaling pathway; ASSOCIATED WITH allergic asthma (ortholog); COVID-19 (ortholog); hypertension (ortholog); FOUND IN plasma membrane (ortholog) NW_004955409 10801370 10810161 - 102011282 AGCD01009485;GBDK01397856;XM_005376785 XP_005376842 MODEL 10136571 ncrna LOC106149960 uncharacterized LOC106149960 NW_004955458 5327632 5328448 - 106149960 AGCD01047476;GBDK01044031;XR_001236454;XR_001236455 MODEL 8922352 protein-coding Tie1 tyrosine kinase with immunoglobulin like and EGF like domains 1 INVOLVED IN aortic valve morphogenesis (ortholog); blood vessel development (ortholog); branching involved in lymph vessel morphogenesis (ortholog); ASSOCIATED WITH Lymphatic Malformation 11 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955537 2894913 2914284 + 102024611 AGCD01070939;GBDK01005466;XM_005410646;XM_005410647 XP_005410703;XP_005410704 MODEL 8724109 ncrna LOC102018853 uncharacterized LOC102018853 NW_004955433 21601809 21606853 + 102018853 AGCD01031928;GBDF01290084;XR_261604 MODEL 8897962 protein-coding Ppip5k1 diphosphoinositol pentakisphosphate kinase 1 ENCODES a protein that exhibits 5-diphosphoinositol pentakisphosphate 1-kinase activity (ortholog); inositol hexakisphosphate 1-kinase activity (ortholog); inositol hexakisphosphate 5-kinase activity (ortholog); INVOLVED IN inositol metabolic process (ortholog); PARTICIPATES IN inositol phosphate metabolic pathway; FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955416 10074239 10113268 - 102008408 AGCD01017105;AGCD01017106;GBCB01060923;XM_005381392;XM_005381393;XM_005381402;XM_013512448;XM_013512449;XM_013512450;XM_013512451;XM_013512452;XM_013512453;XM_013512454;XM_013512455;XM_013512456 XP_005381449;XP_005381450;XP_005381459;XP_013367902;XP_013367903;XP_013367904;XP_013367905;XP_013367906;XP_013367907;XP_013367908;XP_013367909;XP_013367910 MODEL 8991735 protein-coding Linc02874 long intergenic non-protein coding RNA 2874 NW_004955547 2545043 2551414 - 102017816 AGCD01072283;XM_013508444 XP_013363898 MODEL 8852860 ncrna LOC102015810 uncharacterized LOC102015810 NW_004955458 7861529 7899431 + 102015810 AGCD01047592;AGCD01047593;AGCD01047594;GBDF01249843;XR_001236442;XR_262987 MODEL 8853448 protein-coding Qprt quinolinate phosphoribosyltransferase ENCODES a protein that exhibits identical protein binding (ortholog); nicotinate-nucleotide diphosphorylase (carboxylating) activity (ortholog); INVOLVED IN 'de novo' NAD+ biosynthetic process from L-tryptophan (ortholog); NAD+ biosynthetic process (ortholog); quinolinate catabolic process (ortholog); PARTICIPATES IN de novo nicotinamide adenine dinucleotide biosynthetic pathway; niacin metabolic pathway; ASSOCIATED WITH Huntington's disease (ortholog); pellagra (ortholog); spondylocostal dysostosis 5 (ortholog); FOUND IN catalytic complex (ortholog); cytosol (ortholog) NW_004955493 7225472 7243078 - 102011554 AGCD01061168;AGCD01061169;AGCD01061170;GBCQ01003527;XM_005405247 XP_005405304 MODEL 8821998 protein-coding Slc6a13 solute carrier family 6 member 13 ENCODES a protein that exhibits amino acid binding (ortholog); amino acid transmembrane transporter activity (ortholog); amino acid:sodium symporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); creatine transmembrane transport (ortholog); gamma-aminobutyric acid import (ortholog); FOUND IN basolateral plasma membrane (ortholog); mitochondrion (ortholog); plasma membrane (ortholog) NW_004955454 6866740 6940686 + 102015075 AGCD01045271;AGCD01045272;AGCD01045273;AGCD01045274;GBDK01348066;XM_005396014;XM_005396016;XM_005396017;XM_005396018;XM_013520165 XP_005396071;XP_005396073;XP_005396074;XP_005396075;XP_013375619 MODEL 8850973 protein-coding Raf1 Raf-1 proto-oncogene, serine/threonine kinase ENCODES a protein that exhibits adenylate cyclase activator activity (ortholog); adenylate cyclase binding (ortholog); ATP binding (ortholog); INVOLVED IN cell differentiation (ortholog); death-inducing signaling complex assembly (ortholog); ERBB signaling pathway (ortholog); PARTICIPATES IN altered extracellular signal-regulated Raf/Mek/Erk signaling pathway; ceramide signaling pathway; endothelin signaling pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Cardiomegaly (ortholog); colorectal adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955429 17980956 18049723 + 102019518 AGCD01028872;AGCD01028873;AGCD01028874;GBDF01086292;XM_005387107;XM_005387108;XM_005387109;XM_013515404;XM_013515405 XP_005387164;XP_005387165;XP_005387166;XP_013370858;XP_013370859 MODEL 8953683 protein-coding LOC102011194 cytochrome c oxidase assembly factor 4 homolog, mitochondrial FOUND IN mitochondrion (ortholog) NW_004955414 17658281 17661867 + 102011194 AGCD01015247;AGCD01015248;GBDF01220602;XM_005379932 XP_005379989 MODEL 8740113 protein-coding Wdr44 WD repeat domain 44 ENCODES a protein that exhibits molecular sequestering activity (ortholog); small GTPase binding (ortholog); INVOLVED IN cytosolic ciliogenesis (ortholog); negative regulation of cilium assembly (ortholog); regulation of cell migration (ortholog); FOUND IN endosome membrane (ortholog); Golgi apparatus (ortholog); microtubule (ortholog) NW_004955534 1492990 1599402 - 102017913 AGCD01070498;AGCD01070499;AGCD01070500;AGCD01070501;AGCD01070502;AGCD01070503;GBCB01089438;XM_005410462 XP_005410519 MODEL 8789252 protein-coding LOC102010431 olfactory receptor 13H1-like NW_004955580 1266092 1267030 - 102010431 AGCD01075652;XM_005414225 XP_005414282 MODEL 9066615 ncrna LOC102019286 uncharacterized LOC102019286 NW_004955494 7882189 7889175 + 102019286 AGCD01061558;GBDF01308021;XR_264121 MODEL 8824582 pseudo LOC102007047 hippocampus abundant transcript-like protein 1 pseudogene NW_004955516 606224 607991 + 102007047 AGCD01067389 MODEL 8923251 protein-coding Tph2 tryptophan hydroxylase 2 ENCODES a protein that exhibits tryptophan 5-monooxygenase activity (ortholog); INVOLVED IN cellular response to lithium ion (ortholog); circadian rhythm (ortholog); response to activity (ortholog); ASSOCIATED WITH acute stress disorder (ortholog); alcohol dependence (ortholog); alcohol use disorder (ortholog); FOUND IN axon (ortholog); cytosol (ortholog); neuron projection (ortholog) NW_004955405 11877474 11981035 + 102005552 AGCD01004844;GBDI01275596;XM_005374324;XM_013517642;XM_013517643;XM_013517645 XP_005374381;XP_013373096;XP_013373097;XP_013373099 MODEL 8762910 protein-coding Triml1 tripartite motif family like 1 ASSOCIATED WITH prostate cancer (ortholog) NW_004955403 21043233 21050261 - 102013678 AGCD01002179;GBDF01054116;XM_005373423;XM_005373424 XP_005373480;XP_005373481 MODEL 8713191 protein-coding Prex2 phosphatidylinositol-3,4,5-trisphosphate dependent Rac exchange factor 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN adult locomotory behavior (ortholog); dendrite morphogenesis (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); cholangiocarcinoma (ortholog); head and neck squamous cell carcinoma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955444 11154318 11414680 - 102007377 AGCD01039035;AGCD01039036;AGCD01039037;AGCD01039038;AGCD01039039;AGCD01039040;AGCD01039041;GBCQ01125181;GBDK01093613;XM_005392120 XP_005392177 MODEL 9041840 protein-coding Rita1 RBPJ interacting and tubulin associated 1 ENCODES a protein that exhibits tubulin binding (ortholog); INVOLVED IN negative regulation of Notch signaling pathway (ortholog); nuclear export (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955482 9510070 9514118 + 102014249 AGCD01057574;GBDI01294672;XM_005403213 XP_005403270 MODEL 39133297 snrna U4 U4 spliceosomal RNA 8859111 protein-coding Smim19 small integral membrane protein 19 NW_004955536 380062 384608 - 102005633 AGCD01070725;GBCB01001967;GBDK01136291;XM_013507726 XP_013363180 MODEL 9027259 pseudo LOC102011620 60S ribosomal protein L27 pseudogene NW_004955452 12777543 12777937 - 102011620 AGCD01044365 MODEL 8729828 ncrna LOC102021779 uncharacterized LOC102021779 NW_004955495 5177777 5182165 + 102021779 AGCD01061979;AGCD01061980;GBDF01046728;XR_264151;XR_264152 MODEL 8819142 protein-coding LOC102027307 chymotrypsinogen B NW_004955484 2360277 2370518 + 102027307 AGCD01058111;AGCD01058112;AGCD01058113;GBDF01165322;XM_013503853 XP_013359307 MODEL 8883822 ncrna LOC102009657 uncharacterized LOC102009657 NW_004955442 3325633 3327511 + 102009657 AGCD01037505;GBDF01145907;XR_262111 MODEL 8900587 protein-coding LOC102008531 BRCA1-A complex subunit RAP80-like NW_004955417 1529837 1666641 - 102008531 AGCD01017837;AGCD01017838;AGCD01017839;AGCD01017840;AGCD01017841;AGCD01017842;AGCD01017843;AGCD01017844;XM_013512696 XP_013368150 MODEL 8846332 ncrna LOC102006682 uncharacterized LOC102006682 NW_004955423 21568062 21582267 + 102006682 AGCD01023945;GBDF01193731;XR_260985 MODEL 8765167 pseudo LOC102018855 60S ribosomal protein L12-like NW_004955435 12047641 12048394 + 102018855 AGCD01033133 MODEL 8892708 pseudo LOC102028656 fatty acid-binding protein, heart pseudogene NW_004955425 25863616 25864035 - 102028656 AGCD01025939 MODEL 9013841 protein-coding Pcdh1 protocadherin 1 ASSOCIATED WITH asthma (ortholog); atopic dermatitis (ortholog); brain metastasis (ortholog); FOUND IN cell junction (ortholog) NW_004955415 11916095 11934658 + 102030413 AGCD01016181;GBCQ01098063;GBDK01229393;XM_005380718 XP_005380775 MODEL 8793304 protein-coding LOC102017702 natural cytotoxicity triggering receptor 2 NW_004955437 7878039 7880780 + 102017702 AGCD01034470;XM_013516719 XP_013372173 MODEL 10093947 ncrna LOC106148217 uncharacterized LOC106148217 NW_004955417 2221130 2253202 - 106148217 AGCD01017873;GBDF01285566;XR_001233467 MODEL 9031246 ncrna LOC102015815 uncharacterized LOC102015815 NW_004955410 30475748 30514297 + 102015815 AGCD01011308;GBBH01177252;XR_001232752;XR_259892 MODEL 8789680 pseudo LOC102003813 small nuclear ribonucleoprotein Sm D2 pseudogene NW_004955561 1082911 1083548 - 102003813 AGCD01073830 MODEL 9026632 protein-coding LOC102026327 contactin-associated protein-like 4 NW_004955484 1048722 1190823 + 102026327 AGCD01057914;AGCD01057915;AGCD01057916;AGCD01057917;AGCD01057918;AGCD01057919;AGCD01057920;AGCD01057921;AGCD01057922;AGCD01057923;AGCD01057924;AGCD01057925;AGCD01057926;AGCD01057927;AGCD01057928;AGCD01057929;AGCD01057930;AGCD01057931;AGCD01057932;AGCD01057933;GBBH01039015;XM_013503850 XP_013359304 MODEL 9042548 pseudo LOC102012813 general transcription factor IIH subunit 2-like NW_004955446 10843415 10844092 + 102012813 AGCD01040191 MODEL 8896744 protein-coding LOC102023521 HLA class II histocompatibility antigen, DM beta chain ENCODES a protein that exhibits MHC class II protein complex binding (ortholog); INVOLVED IN antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); MHC class II protein complex assembly (ortholog); peptide antigen assembly with MHC class II protein complex (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN late endosome membrane (ortholog); lysosomal membrane (ortholog); MHC class II protein complex (ortholog) NW_004955437 1544906 1551412 - 102023521 AGCD01034216;GBBH01000778;GBDI01007415;XM_013517006 XP_013372460 MODEL 39131740 snorna SNORA70 Small nucleolar RNA SNORA70 8966444 protein-coding Plekha7 pleckstrin homology domain containing A7 ENCODES a protein that exhibits delta-catenin binding (ortholog); INVOLVED IN cell-cell adhesion mediated by cadherin (ortholog); epithelial cell-cell adhesion (ortholog); pore complex assembly (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH angle-closure glaucoma (ortholog); Cardiac Fibrosis (ortholog); cleft lip (ortholog); FOUND IN cell junction (ortholog); cell-cell junction (ortholog); centrosome (ortholog) NW_004955414 31655391 31784009 - 102006236 AGCD01015759;AGCD01015760;GBCE01009822;XM_005380369;XM_013511964;XM_013511965;XM_013511966;XM_013511967 XP_005380426;XP_013367418;XP_013367419;XP_013367420;XP_013367421 MODEL 8889608 protein-coding Rxrg retinoid X receptor gamma ENCODES a protein that exhibits identical protein binding (ortholog); molecular condensate scaffold activity (ortholog); nuclear receptor activity (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); heart development (ortholog); neuron differentiation (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH lung non-small cell carcinoma (ortholog); Myocardial Ischemia (ortholog); papillary thyroid carcinoma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955462 11238963 11281905 + 102005681 AGCD01049388;AGCD01049389;GBDK01322855;XM_005398248;XM_013521352;XM_013521353 XP_005398305;XP_013376806;XP_013376807 MODEL 9014812 protein-coding Ptgdr2 prostaglandin D2 receptor 2 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); prostaglandin binding (ortholog); prostaglandin D receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); calcium-mediated signaling (ortholog); chemotaxis (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); allergic asthma (ortholog); aspergillosis (ortholog) NW_004955511 5536602 5539944 - 102018518 AGCD01066567;AGCD01066568;GBDI01346045;XM_005408286 XP_005408343 MODEL 8743113 protein-coding Tifa TRAF interacting protein with forkhead associated domain INVOLVED IN cytoplasmic pattern recognition receptor signaling pathway (ortholog); innate immune response (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); FOUND IN cytoplasm (ortholog); ubiquitin ligase complex (ortholog) NW_004955457 14444811 14460168 + 102020529 AGCD01047073;GBDF01293417;XM_005397102;XM_005397103;XR_262952;XR_262953 XP_005397159;XP_005397160 MODEL 8814014 protein-coding Smim2 small integral membrane protein 2 NW_004955518 2093272 2093669 - 102027562 AGCD01067771;GBBH01127479;XM_013506951 XP_013362405 MODEL 9029465 ncrna LOC102010821 uncharacterized LOC102010821 NW_004955505 3545137 3556925 + 102010821 AGCD01065031;GBBH01131759;XR_264306 MODEL 8965813 ncrna Linc02915 long intergenic non-protein coding RNA 2915 NW_004955416 6178585 6178974 + 102005140 AGCD01016933;XM_005415397 XP_005415454 MODEL 9066488 protein-coding Sec61a2 SEC61 translocon subunit alpha 2 ENCODES a protein that exhibits ribosome binding (ortholog); ASSOCIATED WITH polycystic liver disease (ortholog) NW_004955462 166423 189592 + 102005235 AGCD01049071;GBDK01237240;XM_005398076 XP_005398133 MODEL 39131530 protein-coding BTBD9 BTB domain containing 9 8899577 pseudo LOC102027311 vomeronasal type-1 receptor 4-like NW_004955490 6860170 6861047 + 102027311 AGCD01060240 MODEL 9024737 protein-coding LOC102008533 cytochrome c oxidase subunit 7C, mitochondrial ASSOCIATED WITH Alzheimer's disease (ortholog); obesity (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955418 24413883 24416530 - 102008533 AGCD01019331;GBCE01002366;XM_005382301 XP_005382358 MODEL 8906087 protein-coding Prrg4 proline rich and Gla domain 4 ENCODES a protein that exhibits WW domain binding (ortholog); ASSOCIATED WITH cholangiocarcinoma (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog); plasma membrane (ortholog) NW_004955422 13305422 13327188 - 102026876 AGCD01022820;AGCD01022821;GBBH01077083;GBDK01181646;XM_013514331 XP_013369785 MODEL 8963940 protein-coding LOC102005583 apolipoprotein L2-like NW_004955413 22371700 22393689 - 102005583 AGCD01014294;AGCD01014295;AGCD01014296;AGCD01014297;AGCD01014298;AGCD01014299;XM_005379646 XP_005379703 MODEL 9045681 pseudo LOC102030447 heterogeneous nuclear ribonucleoprotein A1-like NW_004955505 6112059 6112988 - 102030447 AGCD01065162 MODEL 8714909 protein-coding Pdlim3 PDZ and LIM domain 3 ENCODES a protein that exhibits actinin binding (ortholog); cytoskeletal protein binding (ortholog); structural constituent of muscle (ortholog); INVOLVED IN actin filament organization (ortholog); heart development (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); cardiomyopathy (ortholog); dilated cardiomyopathy (ortholog); FOUND IN actin cytoskeleton (ortholog); cytosol (ortholog); Z disc (ortholog) NW_004955403 23546291 23579975 + 102023423 AGCD01002248;GBCB01003860;XM_005373451;XM_005373453;XM_005373455 XP_005373508;XP_005373510;XP_005373512 MODEL 8709430 ncrna LOC102017705 uncharacterized LOC102017705 NW_004955439 13711628 13716911 + 102017705 AGCD01035964;GBDF01041651;XR_261989 MODEL 8774473 protein-coding Rfx1 regulatory factor X1 ENCODES a protein that exhibits DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955415 32710135 32737918 - 102008620 AGCD01016731;AGCD01016732;GBCC01047226;XM_005381077;XM_013512197 XP_005381134;XP_013367651 MODEL 8856428 protein-coding Rbm23 RNA binding motif protein 23 INVOLVED IN positive regulation of DNA-templated transcription (ortholog); regulation of mRNA splicing, via spliceosome (ortholog) NW_004955409 37384872 37392896 + 102021104 AGCD01010511;GBDF01306118;XM_013510245 XP_013365699 MODEL 10195718 ncrna LOC106149961 uncharacterized LOC106149961 NW_004955458 518276 520439 - 106149961 AGCD01047131;GBDI01370925;XR_001236456 MODEL 8975019 protein-coding Setdb2 SET domain bifurcated histone lysine methyltransferase 2 ENCODES a protein that exhibits histone H3K9 methyltransferase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); mitotic cell cycle (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955431 2899849 2943091 + 102024712 AGCD01029942;GBCC01045530;XM_005387590;XM_005387591;XM_005387592;XM_013515747;XM_013515748 XP_005387647;XP_005387648;XP_005387649;XP_013371201;XP_013371202 MODEL 8876044 protein-coding Ppip5k2 diphosphoinositol pentakisphosphate kinase 2 ENCODES a protein that exhibits 5-diphosphoinositol pentakisphosphate 1-kinase activity (ortholog); ATP binding (ortholog); inositol hexakisphosphate 1-kinase activity (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 100 (ortholog); keratoconus (ortholog); nonsyndromic deafness (ortholog); FOUND IN cytosol (ortholog) NW_004955418 10822220 10898070 - 102026976 AGCD01018987;AGCD01018988;GBDF01157112;XM_005382192;XM_005382193;XM_005382195;XM_005382196;XM_005382197;XM_005382198;XM_005382199;XM_005382200;XM_005382201;XM_005382204;XM_013513002;XM_013513003;XM_013513004;XM_013513005;XM_013513006 XP_005382249;XP_005382250;XP_005382252;XP_005382253;XP_005382254;XP_005382255;XP_005382256;XP_005382257;XP_005382258;XP_005382261;XP_013368456;XP_013368457;XP_013368458;XP_013368459;XP_013368460 MODEL 8796530 ncrna LOC102023525 uncharacterized LOC102023525 NW_004955540 764227 796200 - 102023525 AGCD01071286;AGCD01071287;GBDK01357828;XR_001232114;XR_264815 MODEL 9006718 protein-coding LOC102028004 olfactory receptor 5B2-like NW_004955511 3144735 3176098 + 102028004 AGCD01066445;AGCD01066446;GBDF01014344;XM_013506390;XM_013506391;XR_001231685 XP_013361844;XP_013361845 MODEL 8835000 protein-coding Eno1 enolase 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); enzyme binding (ortholog); GTPase binding (ortholog); INVOLVED IN canonical glycolysis (ortholog); cellular response to hypoxia (ortholog); cellular response to interleukin-7 (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); adenocarcinoma (ortholog); Alzheimer's disease (ortholog); FOUND IN cell cortex (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955486 4275371 4287152 + 102025912 AGCD01059057;GBDF01006171;XM_005404048;XM_005404051 XP_005404105;XP_005404108 MODEL 8874158 protein-coding LOC102029031 putative serine protease 47 NW_004955606 442562 450252 + 102029031 AGCD01076964;GBDF01009963;XM_005414903;XM_013510109;XM_013510110 XP_005414960;XP_013365563;XP_013365564 MODEL 8862647 protein-coding Snx29 sorting nexin 29 NW_004955442 6082362 6607440 - 102023201 AGCD01037580;AGCD01037581;AGCD01037582;AGCD01037583;AGCD01037584;AGCD01037585;AGCD01037586;AGCD01037587;AGCD01037588;AGCD01037589;AGCD01037590;GBDF01272494;XM_005391150;XM_013517836 XP_005391207;XP_013373290 MODEL 8726261 protein-coding Qrfp pyroglutamylated RFamide peptide ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); neuropeptide hormone activity (ortholog); orexigenic neuropeptide QRFP receptor binding (ortholog); INVOLVED IN grooming behavior (ortholog); locomotory behavior (ortholog); neuropeptide signaling pathway (ortholog) NW_004955513 802809 805835 - 102017901 AGCD01066832;GBCE01009059;XM_005408349 XP_005408406 MODEL 8799087 protein-coding LOC102011197 vomeronasal type-1 receptor 90-like NW_004955414 14915467 14916408 - 102011197 AGCD01015162;XM_005380438 XP_005380495 MODEL 8897914 ncrna LOC102006684 uncharacterized LOC102006684 NW_004955497 7496522 7500425 - 102006684 AGCD01062678;GBDJ01389347;XR_001231425;XR_264211 MODEL 8982726 ncrna LOC102025967 uncharacterized LOC102025967 NW_004955915 4732 10513 - 102025967 AGCD01078662;GBDF01188258;XR_265196 MODEL 8752348 ncrna LOC102010432 uncharacterized LOC102010432 NW_004955449 7929705 7955196 - 102010432 AGCD01042005;XR_262495 MODEL 8919434 protein-coding LOC102028657 glutathione peroxidase 3-like NW_004955425 25483084 25483659 - 102028657 AGCD01025921;GBDF01023870;XM_013514780 XP_013370234 MODEL 8843458 protein-coding Lingo1 leucine rich repeat and Ig domain containing 1 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); INVOLVED IN central nervous system neuron development (ortholog); negative regulation of oligodendrocyte differentiation (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 64 (ortholog); essential tremor (ortholog); glaucoma (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog); presynapse (ortholog) NW_004955450 2435768 2493387 - 102023651 AGCD01042383;AGCD01042384;AGCD01042385;GBDI01366797;XM_005393495;XM_005393496;XM_005393497;XM_005393498;XM_013518819 XP_005393552;XP_005393553;XP_005393554;XP_005393555;XP_013374273 MODEL 8836488 protein-coding LOC102024519 vomeronasal type-1 receptor 1-like NW_004955584 372741 373664 - 102024519 AGCD01075940;XM_005414410 XP_005414467 MODEL 8802803 protein-coding LOC102007048 liver carboxylesterase 1-like NW_004955433 13239101 13268057 - 102007048 AGCD01031682;GBDF01064548;XM_005388323;XM_005388325 XP_005388380;XP_005388382 MODEL 9065210 protein-coding Slc17a9 solute carrier family 17 member 9 ENCODES a protein that exhibits ADP transmembrane transporter activity (ortholog); ATP transmembrane transporter activity (ortholog); guanine nucleotide transmembrane transporter activity (ortholog); INVOLVED IN ADP transport (ortholog); ATP export (ortholog); ATP transport (ortholog); ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog); porokeratosis (ortholog); Porokeratosis, Disseminated Superficial Actinic, 8 (ortholog); FOUND IN chromaffin granule membrane (ortholog); lysosomal membrane (ortholog); mucin granule (ortholog) NW_004955528 1124430 1139476 - 102019730 AGCD01069552;GBDK01265855;XM_005409998;XM_005410000;XM_005410001 XP_005410055;XP_005410057;XP_005410058 MODEL 8819711 protein-coding LOC102019287 olfactory receptor 7E24-like NW_004955495 533469 599025 - 102019287 AGCD01061635;AGCD01061636;AGCD01061637;AGCD01061638;AGCD01061639;AGCD01061640;AGCD01061641;AGCD01061642;GBDF01039324;XM_005405558 XP_005405615 MODEL 39133230 snrna U4 U4 spliceosomal RNA 8701528 protein-coding Rlbp1 retinaldehyde binding protein 1 ENCODES a protein that exhibits 11-cis retinal binding (ortholog); PARTICIPATES IN altered retinoid cycle metabolic pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH Bothnia retinal dystrophy (ortholog); congenital stationary night blindness (ortholog); Eye Abnormalities (ortholog); FOUND IN cell body (ortholog); cytosol (ortholog) NW_004955416 15862510 15873261 + 102003653 AGCD01017346;GBDF01112309;XM_005381557;XM_005381558;XM_005381559 XP_005381614;XP_005381615;XP_005381616 MODEL 10156522 ncrna LOC106147122 uncharacterized LOC106147122 NW_004955520 2327237 2338394 - 106147122 AGCD01068078;GBCB01080155;XR_001231875;XR_001231876 MODEL 8800620 pseudo LOC102011623 60S ribosomal protein L21 pseudogene NW_004955453 11145197 11145736 + 102011623 AGCD01044801 MODEL 8873066 protein-coding Slc6a14 solute carrier family 6 member 14 ENCODES a protein that exhibits (R)-carnitine transmembrane transporter activity (ortholog); alanine transmembrane transporter activity (ortholog); aromatic amino acid transmembrane transporter activity (ortholog); INVOLVED IN (R)-carnitine transmembrane transport (ortholog); alanine transport (ortholog); amino acid import across plasma membrane (ortholog); ASSOCIATED WITH Acidoses (ortholog); celiac disease (ortholog); cystic fibrosis (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); cytoplasm (ortholog) NW_004955534 3463057 3488577 - 102020710 AGCD01070584;GBDJ01165487;XM_005410472;XM_005410473;XM_013507709 XP_005410529;XP_005410530;XP_013363163 MODEL 8858830 protein-coding LOC102018858 olfactory receptor 2A5-like NW_004955537 2612449 2613549 - 102018858 AGCD01070933;XM_005410627 XP_005410684 MODEL 8784244 protein-coding LOC102009660 protein HIRA ENCODES a protein that exhibits histone binding (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN gastrulation (ortholog); muscle cell differentiation (ortholog); osteoblast differentiation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Cardiac Fibrosis (ortholog); Fanconi anemia complementation group T (ortholog); prostate cancer (ortholog); FOUND IN chromatin (ortholog); HIR complex (ortholog); nucleoplasm (ortholog) NW_004955442 18581370 18673590 + 102009660 AGCD01038011;AGCD01038012;GBCQ01129723;GBDI01264132;XM_005391780 XP_005391837 MODEL 8785612 protein-coding Wdr45 WD repeat domain 45 ENCODES a protein that exhibits phosphatidylinositol phosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); protein kinase binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); CEREBRAL-CEREBELLAR-COLOBOMA SYNDROME, X-LINKED (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); phagophore assembly site (ortholog) NW_004955543 597796 604163 - 102006712 AGCD01071593;GBDI01078234;XM_005411316;XM_005411317;XM_005411319;XM_013508149 XP_005411373;XP_005411374;XP_005411376;XP_013363603 MODEL 8790886 protein-coding Setx senataxin ENCODES a protein that exhibits 5'-3' DNA helicase activity (ortholog); 5'-3' DNA/RNA helicase activity (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); cellular response to oxidative stress (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); amyotrophic lateral sclerosis type 4 (ortholog); FOUND IN axon (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955513 1718432 1776133 - 102026139 AGCD01066862;GBDK01147152;GBDK01147154;XM_005408377 XP_005408434 MODEL 8791026 protein-coding Tpi1 triosephosphate isomerase 1 ENCODES a protein that exhibits isomerase activity (ortholog); protein homodimerization activity (ortholog); triose-phosphate isomerase activity (ortholog); INVOLVED IN canonical glycolysis (ortholog); gluconeogenesis (ortholog); glucose metabolic process (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose and mannose metabolic pathway; fructose-1,6-bisphosphatase deficiency pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Animal Disease Models (ortholog); carbohydrate metabolic disorder (ortholog); FOUND IN cytosol (ortholog) NW_004955413 4467615 4471594 + 102005919 AGCD01013617;GBDF01008105;XM_005378838 XP_005378895 MODEL 8769032 ncrna LOC102015819 uncharacterized LOC102015819 NW_004955464 906749 927812 + 102015819 AGCD01049942;GBDF01099433;XR_263186 MODEL 8705508 protein-coding Pcdh10 protocadherin 10 INVOLVED IN cell adhesion (ortholog); homophilic cell-cell adhesion (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic membrane (ortholog) NW_004955428 9433478 9495260 - 102026240 AGCD01027836;AGCD01027837;GBDF01264237;XM_005386714;XM_005386716;XM_005386717;XR_261296;XR_261297 XP_005386771;XP_005386773;XP_005386774 MODEL 8941553 ncrna LOC102009664 uncharacterized LOC102009664 NW_004955566 1804100 1820455 - 102009664 AGCD01074369;GBDI01312924;XR_001232397;XR_001232398;XR_001232399;XR_265024 MODEL 9028411 protein-coding LOC102021781 tubulin alpha-1C chain-like NW_004955499 225128 255221 - 102021781 AGCD01063201;AGCD01063202;AGCD01063203;AGCD01063204;AGCD01063205;AGCD01063206;GBCQ01114400;XM_013505551 XP_013361005 MODEL 8996270 ncrna LOC102003814 uncharacterized LOC102003814 NW_004955444 9445917 9463729 - 102003814 AGCD01038970;GBDF01128007;XR_262253;XR_262254 MODEL 8838953 protein-coding Prf1 perforin 1 ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); wide pore channel activity (ortholog); INVOLVED IN circadian rhythm (ortholog); defense response to tumor cell (ortholog); defense response to virus (ortholog); ASSOCIATED WITH aplastic anemia (ortholog); asthma (ortholog); autistic disorder (ortholog); FOUND IN cytolytic granule (ortholog); cytoplasmic vesicle (ortholog); endosome lumen (ortholog) NW_004955437 20700912 20705076 + 102011908 AGCD01034879;AGCD01034880;GBDK01182633;XM_005390052 XP_005390109 MODEL 39131741 snorna SNORA70 Small nucleolar RNA SNORA70 9020113 pseudo LOC102017715 sialic acid-binding Ig-like lectin 13 NW_004955558 1206318 1210776 - 102017715 AGCD01073422 MODEL 39133232 snrna U4 U4 spliceosomal RNA 8931069 protein-coding Rxylt1 ribitol xylosyltransferase 1 ENCODES a protein that exhibits ribitol beta-1,4-xylosyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation via mannose (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A10 (ortholog); genetic disease (ortholog); Walker-Warburg syndrome (ortholog); FOUND IN catalytic complex (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955458 10649364 10674913 + 102007862 AGCD01047698;AGCD01047699;GBCQ01005457;GBDJ01181625;XM_013521008 XP_013376462 MODEL 8938549 protein-coding Pdlim4 PDZ and LIM domain 4 ENCODES a protein that exhibits actinin binding (ortholog); alpha-actinin binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); excitatory chemical synaptic transmission (ortholog); positive regulation of stress fiber assembly (ortholog); ASSOCIATED WITH Lung Neoplasms (ortholog); Neurodevelopmental Disorders (ortholog); osteoporosis (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog) NW_004955408 3638264 3647792 + 102027382 AGCD01008068;GBDI01120451;GBDJ01024225;XM_013508295 XP_013363749 MODEL 8736669 protein-coding Ptgds prostaglandin D2 synthase ENCODES a protein that exhibits fatty acid binding (ortholog); prostaglandin-D synthase activity (ortholog); retinoid binding (ortholog); INVOLVED IN cyclooxygenase pathway (ortholog); gene expression (ortholog); negative regulation of male germ cell proliferation (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH arteriosclerosis (ortholog); carotid artery disease (ortholog); chronic rhinosinusitis with nasal polyps (ortholog); FOUND IN extracellular region (ortholog); Golgi apparatus (ortholog); rough endoplasmic reticulum (ortholog) NW_004955513 5009530 5012781 + 102028669 AGCD01066949;AGCD01066950;GBCQ01008032;XM_005408569 XP_005408626 MODEL 9063563 protein-coding Rag1 recombination activating 1 ENCODES a protein that exhibits endonuclease activity (ortholog); histone binding (ortholog); identical protein binding (ortholog); INVOLVED IN adaptive immune response (ortholog); B cell differentiation (ortholog); negative regulation of T cell apoptotic process (ortholog); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); Albuminuria (ortholog); Alpha/Beta T-Cell Lymphopenia with Gamma/Delta T-Cell Expansion, Severe Cytomegalovirus Infection, and Autoimmunity (ortholog); FOUND IN nucleus (ortholog) NW_004955422 9891878 9928569 - 102004611 AGCD01022724;AGCD01022725;AGCD01022726;GBDF01299674;JN414958;KF590658;XM_005384104;XM_013514280 AEP18785;AGW05221;XP_005384161;XP_013369734 MODEL 8867158 protein-coding Sec61b SEC61 translocon subunit beta ENCODES a protein that exhibits epidermal growth factor binding (ortholog); ribosome binding (ortholog); INVOLVED IN ERAD pathway (ortholog); retrograde protein transport, ER to cytosol (ortholog); SRP-dependent cotranslational protein targeting to membrane, translocation (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum quality control compartment (ortholog) NW_004955419 26414891 26423260 - 102008858 AGCD01020408;GBCQ01000947;XM_005382941 XP_005382998 MODEL 8976262 protein-coding Plekha8 pleckstrin homology domain containing A8 ENCODES a protein that exhibits ceramide binding (ortholog); cerebroside transfer activity (ortholog); glycolipid binding (ortholog); INVOLVED IN ER to Golgi ceramide transport (ortholog); globoside biosynthetic process (ortholog); glycolipid transport (ortholog); FOUND IN nucleoplasm (ortholog); trans-Golgi network (ortholog) NW_004955410 31327015 31386671 + 102017751 AGCD01011321;AGCD01011322;AGCD01011323;GBDF01087012;XM_005377490;XM_013510617 XP_005377547;XP_013366071 MODEL 9011407 pseudo LOC102023526 protein kinase C iota type-like NW_004955437 14371160 14373635 + 102023526 AGCD01034669 MODEL 9030246 protein-coding Ppl periplakin INVOLVED IN regulation of antibacterial peptide production (ortholog); response to mechanical stimulus (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); plasma membrane (ortholog) NW_004955442 12581918 12627407 + 102029011 AGCD01037740;AGCD01037741;GBCE01133637;XM_005391258 XP_005391315 MODEL 39131472 protein-coding TRIML2 tripartite motif family like 2 9059226 protein-coding Btc betacellulin ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); growth factor activity (ortholog); receptor ligand activity (ortholog); INVOLVED IN epidermal growth factor receptor signaling pathway (ortholog); ERBB2-EGFR signaling pathway (ortholog); ERBB4-ERBB4 signaling pathway (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH erythropoietic protoporphyria (ortholog); Experimental Diabetes Mellitus (ortholog); Glucagonoma (ortholog); FOUND IN extracellular region (ortholog) NW_004955474 895573 946152 - 102007545 AGCD01054231;AGCD01054232;GBCB01020646;XM_005401314 XP_005401371 MODEL 8943620 protein-coding Eno2 enolase 2 ENCODES a protein that exhibits enzyme binding (ortholog); identical protein binding (ortholog); phosphopyruvate hydratase activity (ortholog); INVOLVED IN canonical glycolysis (ortholog); gluconeogenesis (ortholog); multicellular organismal reproductive process (ortholog); PARTICIPATES IN gluconeogenesis pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Atrophy (ortholog); brain disease (ortholog); FOUND IN cell cortex (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955413 4498625 4506769 + 102006232 AGCD01013620;GBBH01088486;GBDF01119626;XM_005378839 XP_005378896 MODEL 9044392 protein-coding LOC102011198 signal-regulatory protein beta-1 NW_004955415 12897443 12955738 - 102011198 AGCD01016236;AGCD01016237;GBCE01043667;XM_013512246;XM_013512247;XM_013512248 XP_013367700;XP_013367701;XP_013367702 MODEL 8777879 protein-coding Qrfpr pyroglutamylated RFamide peptide receptor ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH bone structure disease (ortholog); FOUND IN non-motile cilium (ortholog) NW_004955428 19238479 19290510 + 102020145 AGCD01028088;AGCD01028089;AGCD01028090;AGCD01028091;XM_005386788 XP_005386845 MODEL 8976735 protein-coding Rybp RING1 and YY1 binding protein ENCODES a protein that exhibits DNA binding (ortholog); nucleic acid binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955421 15728778 15803150 + 102005268 AGCD01021991;AGCD01021992;GBDF01118383;GBDI01356522;XM_013513794 XP_013369248 MODEL 8944914 ncrna LOC102026328 uncharacterized LOC102026328 NW_004955420 1623387 1633512 + 102026328 AGCD01020575;GBDF01308428;XR_001233819;XR_001233820;XR_001233821 MODEL 8768755 protein-coding LOC102025968 cytochrome c oxidase assembly factor 3 homolog, mitochondrial ENCODES a protein that exhibits protein folding chaperone (ortholog); INVOLVED IN mitochondrial respiratory chain complex IV assembly (ortholog); positive regulation of mitochondrial translation (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); mitochondrial complex IV deficiency nuclear type 1 (ortholog); mitochondrial complex IV deficiency nuclear type 14 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955451 16607495 16608732 - 102025968 AGCD01043696;GBDK01080832;XM_005394486 XP_005394543 MODEL 8726536 pseudo LOC102028658 growth factor receptor-bound protein 2 pseudogene NW_004955504 385030 385794 - 102028658 AGCD01064819 MODEL 8830994 protein-coding LOC102027315 histone acetyltransferase KAT8 NW_004955493 7959235 7971000 + 102027315 AGCD01061244;AGCD01061245;GBDF01007365;XM_005405296 XP_005405353 MODEL 8905709 ncrna LOC102007052 uncharacterized LOC102007052 NW_004955436 7964613 7966777 - 102007052 AGCD01033721;GBDF01079769;XR_261769 MODEL 8960805 protein-coding Smim20 small integral membrane protein 20 INVOLVED IN mitochondrial respiratory chain complex IV assembly (ortholog); FOUND IN extracellular region (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955443 19242776 19254002 - 102018661 AGCD01038622;GBDJ01132507;XM_005392031 XP_005392088 MODEL 8728466 protein-coding Lingo2 leucine rich repeat and Ig domain containing 2 ASSOCIATED WITH amphetamine abuse (ortholog); Liver Neoplasms (ortholog); megacolon (ortholog); FOUND IN glutamatergic synapse (ortholog); synaptic membrane (ortholog) NW_004955472 5790522 6971152 + 102017227 AGCD01053584;AGCD01053585;AGCD01053586;AGCD01053587;AGCD01053588;AGCD01053589;AGCD01053590;AGCD01053591;AGCD01053592;AGCD01053593;AGCD01053594;AGCD01053595;AGCD01053596;AGCD01053597;AGCD01053598;AGCD01053599;AGCD01053600;AGCD01053601;AGCD01053602;AGCD01053603;AGCD01053604;AGCD01053605;AGCD01053606;AGCD01053607;AGCD01053608;AGCD01053609;AGCD01053610;AGCD01053611;AGCD01053612;AGCD01053613;GBDK01171049;XM_005401120;XM_005401121;XM_005401122;XR_001237087;XR_263553;XR_263554;XR_263555;XR_263556;XR_263557;XR_263558;XR_263559 XP_005401177;XP_005401178;XP_005401179 MODEL 9035769 protein-coding Rbm24 RNA binding motif protein 24 ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); mRNA 3'-UTR binding (ortholog); mRNA CDS binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); DNA damage response (ortholog); endocardial cushion development (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955483 8705533 8716772 - 102024340 AGCD01057842;GBDI01258799;XM_005403407;XM_005403408 XP_005403464;XP_005403465 MODEL 10286406 ncrna LOC106147123 uncharacterized LOC106147123 NW_004955520 2813505 2836089 - 106147123 AGCD01068083;XR_001231881;XR_001231882 MODEL 8735754 pseudo LOC102011624 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955406 19815337 19816321 - 102011624 AGCD01006092 MODEL 10072535 protein-coding LOC106149962 small nuclear ribonucleoprotein E-like NW_004955406 14676735 14677931 + 106149962 AGCD01005967;XM_013520922 XP_013376376 MODEL 8807893 pseudo LOC102028006 60S acidic ribosomal protein P1 pseudogene NW_004955432 9286782 9287729 - 102028006 AGCD01030900 MODEL 8992638 ncrna LOC102018860 uncharacterized LOC102018860 NW_004955439 13825758 13882758 + 102018860 AGCD01035968;GBDF01154382;XR_001235173 MODEL 8770106 protein-coding LOC102029032 olfactory receptor 4F3/4F16/4F29-like NW_004955614 198795 199733 + 102029032 AGCD01077235;XM_005414975 XP_005415032 MODEL 9057895 pseudo LOC102008535 plasma membrane calcium-transporting ATPase 1-like NW_004955483 8088963 8090785 + 102008535 AGCD01057826 MODEL 8990003 protein-coding Snx3 sorting nexin 3 ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN hemoglobin biosynthetic process (ortholog); host-mediated suppression of symbiont invasion (ortholog); intralumenal vesicle formation (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955411 33339974 33344563 - 102011098 AGCD01012354;GBCE01000037;XM_005377844 XP_005377901 MODEL 9012535 pseudo LOC102012815 poly(rC)-binding protein 2 pseudogene NW_004955576 1428099 1429219 + 102012815 AGCD01075376 MODEL 8776081 pseudo LOC102030450 mimitin, mitochondrial pseudogene NW_004955508 6468456 6468963 + 102030450 AGCD01065920 MODEL 8824359 pseudo LOC102024520 protein DBF4 homolog A-like NW_004955612 137320 137941 + 102024520 AGCD01077180 MODEL 8928878 protein-coding Slc18a1 solute carrier family 18 member A1 ENCODES a protein that exhibits enzyme binding (ortholog); monoamine:proton antiporter activity (ortholog); serotonin:sodium:chloride symporter activity (ortholog); INVOLVED IN cellular response to lithium ion (ortholog); dopamine uptake (ortholog); negative regulation of serotonin uptake (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); schizophrenia (ortholog); von Hippel-Lindau disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); secretory granule membrane (ortholog); synapse (ortholog) NW_004955403 43821978 43848403 - 102024521 AGCD01002789;GBDJ01219652;XM_005373626;XM_013513636;XM_013513637 XP_005373683;XP_013369090;XP_013369091 MODEL 8986111 protein-coding LOC102010825 olfactory receptor 4D6 NW_004955511 3967106 3968050 + 102010825 AGCD01066484;XM_005408062 XP_005408119 MODEL 8858319 protein-coding Tigar TP53 induced glycolysis regulatory phosphatase ENCODES a protein that exhibits fructose-2,6-bisphosphate 2-phosphatase activity (ortholog); INVOLVED IN cellular response to cobalt ion (ortholog); cellular response to hypoxia (ortholog); DNA damage response (ortholog); ASSOCIATED WITH Nerve Degeneration (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial outer membrane (ortholog) NW_004955413 2129719 2153873 + 102029277 AGCD01013540;AGCD01013541;GBDF01122114;XM_005378727;XM_005378728 XP_005378784;XP_005378785 MODEL 8905968 protein-coding Rfx2 regulatory factor X2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN acrosome assembly (ortholog); cellular response to leukemia inhibitory factor (ortholog); cilium assembly (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955495 3414737 3485393 + 102017583 AGCD01061856;AGCD01061857;AGCD01061858;AGCD01061859;AGCD01061860;AGCD01061861;GBDF01044808;XM_005405732;XM_005405733;XM_005405735;XM_005405736;XM_005405737;XM_005405739;XM_005405740;XM_013505325;XM_013505326 XP_005405789;XP_005405790;XP_005405792;XP_005405793;XP_005405794;XP_005405796;XP_005405797;XP_013360779;XP_013360780 MODEL 8739900 protein-coding Qrich1 glutamine rich 1 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN endoplasmic reticulum unfolded protein response (ortholog); integrated stress response signaling (ortholog); intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN chromosome (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955532 1052174 1092211 - 102005298 AGCD01070164;AGCD01070165;GBDF01081240;XM_005410175;XM_005410176;XM_013507580;XM_013507581 XP_005410232;XP_005410233;XP_013363034;XP_013363035 MODEL 8830201 protein-coding LOC102024522 glutamate-rich protein 1-like NW_004956601 108 3596 + 102024522 AGCD01079869;AGCD01079870;GBCE01024165;GBDK01393692;XM_005415206 XP_005415263 MODEL 8803441 protein-coding Rlf RLF zinc finger ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN negative regulation of heterochromatin formation (ortholog); regulation of transcription by RNA polymerase II (ortholog) NW_004955452 17588066 17687553 + 102005439 AGCD01044561;AGCD01044562;AGCD01044563;AGCD01044564;AGCD01044565;AGCD01044566;AGCD01044567;AGCD01044568;AGCD01044569;AGCD01044570;AGCD01044571;AGCD01044572;GBDF01188771;XM_005395279;XM_013519549 XP_005395336;XP_013375003 MODEL 8869360 protein-coding Prrt1 proline rich transmembrane protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); signaling receptor regulator activity (ortholog); INVOLVED IN intracellular protein localization (ortholog); learning or memory (ortholog); long-term synaptic depression (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog); postsynaptic density membrane (ortholog) NW_004955437 614026 615177 - 102006074 AGCD01034151;GBBH01219008;XM_013516938 XP_013372392 MODEL 10173139 protein-coding LOC106148218 uncharacterized LOC106148218 NW_004955417 14498842 14500169 - 106148218 AGCD01018207;GBDI01369539;XM_013512857 XP_013368311 MODEL 9040354 protein-coding Prg4 proteoglycan 4 INVOLVED IN hematopoietic stem cell proliferation (ortholog); negative regulation of interleukin-6 production (ortholog); regulation of cell population proliferation (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); camptodactyly-arthropathy-coxa vara-pericarditis syndrome (ortholog); Contracture (ortholog); FOUND IN extracellular region (ortholog) NW_004955406 24726483 24742590 + 102012278 AGCD01006207;GBDK01315861;XM_005375084;XM_005375085;XM_005375086;XM_005375087;XM_013521767 XP_005375141;XP_005375142;XP_005375143;XP_005375144;XP_013377221 MODEL 8963946 ncrna LOC102005587 uncharacterized LOC102005587 NW_004955470 11311958 11314586 - 102005587 AGCD01052885;GBDF01111978;XR_263502 MODEL 8876489 protein-coding LOC102010434 small proline-rich protein 3-like NW_004955592 374906 377181 - 102010434 AGCD01076311;GBDI01016407;XM_005414613;XM_005414614 XP_005414670;XP_005414671 MODEL 8769812 protein-coding Ptger1 prostaglandin E receptor 1 ENCODES a protein that exhibits D1 dopamine receptor binding (ortholog); prostaglandin E receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating dopamine receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); maternal process involved in parturition (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); allergic asthma (ortholog); Animal Mammary Neoplasms (ortholog) NW_004955415 33063052 33067580 - 102016702 AGCD01016748;GBDJ01401845;XM_005381104 XP_005381161 MODEL 8916394 protein-coding LOC102023527 5-hydroxyisourate hydrolase-like NW_004955541 3493680 3496468 - 102023527 AGCD01071450;GBCE01141684;XM_005411087 XP_005411144 MODEL 9014572 protein-coding Rag2 recombination activating 2 ENCODES a protein that exhibits chromatin binding (ortholog); histone H3K4me3 reader activity (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN B cell differentiation (ortholog); B cell homeostatic proliferation (ortholog); B cell lineage commitment (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH combined cellular and humoral immune defects with granulomas (ortholog); common variable immunodeficiency (ortholog); Eosinophilia (ortholog) NW_004955422 9867307 9869732 + 102003558 AGCD01022723;AY303201;GBDF01207383;XM_005384100 AAQ76995;XP_005384157 MODEL 9038066 protein-coding Tpk1 thiamin pyrophosphokinase 1 ENCODES a protein that exhibits identical protein binding (ortholog); thiamine diphosphokinase activity (ortholog); UTP thiamine diphosphokinase activity (ortholog); INVOLVED IN regulation of pyruvate decarboxylation to acetyl-CoA (ortholog); thiamine diphosphate biosynthetic process (ortholog); thiamine metabolic process (ortholog); PARTICIPATES IN thiamine metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); Leigh disease (ortholog); Thiamine Metabolism Dysfunction Syndrome 5 (Episodic Encephalopathy Type) (ortholog); FOUND IN cytosol (ortholog) NW_004955491 621941 968570 - 102006924 AGCD01060343;AGCD01060344;AGCD01060345;AGCD01060346;GBBH01166046;XM_005404730;XM_005404732;XM_013504637;XM_013504638;XM_013504639;XM_013504640 XP_005404787;XP_005404789;XP_013360091;XP_013360092;XP_013360093;XP_013360094 MODEL 8700656 ncrna LOC102015821 uncharacterized LOC102015821 NW_004955412 13142327 13160782 + 102015821 AGCD01012829;GBDF01278571;XR_001232884;XR_001232885;XR_001232886;XR_259991 MODEL 9012822 pseudo LOC102021782 protein numb homolog pseudogene NW_004955425 17697019 17721168 + 102021782 AGCD01025645;AGCD01025646;AGCD01025647;AGCD01025648 MODEL 39131742 snorna SNORA70 Small nucleolar RNA SNORA70 8760058 protein-coding Eno3 enolase 3 ENCODES a protein that exhibits identical protein binding (ortholog); phosphopyruvate hydratase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN canonical glycolysis (ortholog); response to xenobiotic stimulus (ortholog); skeletal muscle tissue regeneration (ortholog); ASSOCIATED WITH aortic valve stenosis (ortholog); genetic disease (ortholog); glycogen storage disease XIII (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955467 10363154 10368261 + 102021867 AGCD01051561;GBDF01119625;XM_005399622 XP_005399679 MODEL 8764433 protein-coding LOC102012817 histone H2B type 3-B NW_004955581 91596 93803 - 102012817 AGCD01075657;XM_005414232 XP_005414289 MODEL 8742731 protein-coding LOC102003815 vomeronasal type-2 receptor 116-like NW_004955563 73850 94496 - 102003815 AGCD01074040;AGCD01074041;AGCD01074042;XM_005413096 XP_005413153 MODEL 8818974 ncrna LOC102021786 uncharacterized LOC102021786 NW_004955429 22132995 22153413 + 102021786 AGCD01029018;AGCD01029019;AGCD01029020;GBDI01041468;XR_001234463;XR_001234464;XR_001234465 MODEL 8831882 protein-coding Slc18a2 solute carrier family 18 member A2 ENCODES a protein that exhibits amine transmembrane transporter activity (ortholog); enzyme binding (ortholog); heat shock protein binding (ortholog); INVOLVED IN aminergic neurotransmitter loading into synaptic vesicle (ortholog); cellular response to ammonium ion (ortholog); cellular response to xenobiotic stimulus (ortholog); PARTICIPATES IN dopamine biosynthetic pathway; epinephrine biosynthetic pathway; norepinephrine biosynthetic pathway; ASSOCIATED WITH depressive disorder (ortholog); genetic disease (ortholog); infantile parkinsonism-dystonia 2 (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cell body (ortholog) NW_004955431 21949553 21979679 + 102028670 AGCD01030506;AGCD01030507;GBBH01203229;XM_005387871;XM_005387872;XM_013515846 XP_005387928;XP_005387929;XP_013371300 MODEL 8865432 protein-coding Rbm25 RNA binding motif protein 25 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN regulation of alternative mRNA splicing, via spliceosome (ortholog); regulation of apoptotic process (ortholog); FOUND IN nuclear speck (ortholog) NW_004955523 2213766 2270417 - 102029658 AGCD01068560;AGCD01068561;GBDJ01126912;XM_005409430;XM_013507153 XP_005409487;XP_013362607 MODEL 9033513 pseudo LOC102028009 transcription initiation factor TFIID subunit 11 pseudogene NW_004955523 1962764 1973124 + 102028009 AGCD01068551 MODEL 9015783 protein-coding Sez6 seizure related 6 homolog INVOLVED IN activation of protein kinase C activity (ortholog); adult locomotory behavior (ortholog); cerebellar Purkinje cell layer development (ortholog); ASSOCIATED WITH Childhood Schizophrenia (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN apical dendrite (ortholog); dendritic shaft (ortholog); dendritic spine (ortholog) NW_004955481 4175637 4220809 + 102017336 AGCD01056932;GBBH01109329;XM_005402699;XM_005402700;XM_005402701;XM_005402702;XM_013503418 XP_005402756;XP_005402757;XP_005402758;XP_005402759;XP_013358872 MODEL 8740399 protein-coding Pdlim5 PDZ and LIM domain 5 ENCODES a protein that exhibits actin binding (ortholog); actinin binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN cell growth involved in cardiac muscle cell development (ortholog); regulation of dendritic spine morphogenesis (ortholog); regulation of postsynapse assembly (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Crohn's disease (ortholog); dilated cardiomyopathy (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955405 5109778 5312192 + 102011944 AGCD01004674;AGCD01004675;AGCD01004676;AGCD01004677;AGCD01004678;AGCD01004679;GBCE01117951;XM_005374259;XM_005374260;XM_005374261;XM_005374262;XM_005374263;XM_005374265;XM_005374266;XM_013517363;XM_013517385 XP_005374316;XP_005374317;XP_005374318;XP_005374319;XP_005374320;XP_005374322;XP_005374323;XP_013372817;XP_013372839 MODEL 8955374 pseudo LOC102019289 cysteine-rich protein 2-binding protein pseudogene NW_004955423 1306040 1307293 - 102019289 AGCD01023432 MODEL 10229351 ncrna LOC106148219 uncharacterized LOC106148219 NW_004955417 27932829 27963789 - 106148219 AGCD01018568;GBDF01127813;XR_001233468;XR_001233469 MODEL 8706093 ncrna LOC102018861 uncharacterized LOC102018861 NW_004955547 1458211 1476533 - 102018861 AGCD01072224;AGCD01072225;GBDJ01374207;XR_001232216 MODEL 8966735 protein-coding Plekhb1 pleckstrin homology domain containing B1 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN regulation of cell differentiation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN membrane (ortholog) NW_004955414 17826812 17840988 - 102014039 AGCD01015256;GBDI01000683;XM_005379942;XM_005379943;XM_005379944;XM_005379945;XM_005379946;XM_005379947 XP_005379999;XP_005380000;XP_005380001;XP_005380002;XP_005380003;XP_005380004 MODEL 8953689 pseudo LOC102011201 40S ribosomal protein S27-like pseudogene NW_004955477 3377398 3380933 - 102011201 AGCD01055553 MODEL 8822301 protein-coding Snx30 sorting nexin family member 30 INVOLVED IN positive regulation of autophagosome assembly (ortholog); protein transport (ortholog); FOUND IN early endosome (ortholog); early endosome membrane (ortholog) NW_004955419 14567317 14645442 - 102028419 AGCD01020029;AGCD01020030;AGCD01020031;AGCD01020032;GBDJ01369598;XM_005382931 XP_005382988 MODEL 8927055 protein-coding Pcdh11x protocadherin 11 X-linked ASSOCIATED WITH Alzheimer's disease (ortholog) NW_004955525 2982220 3919729 + 102022631 AGCD01069115;AGCD01069116;AGCD01069117;AGCD01069118;AGCD01069119;AGCD01069120;AGCD01069121;AGCD01069122;AGCD01069123;AGCD01069124;AGCD01069125;AGCD01069126;AGCD01069127;AGCD01069128;AGCD01069129;AGCD01069130;AGCD01069131;AGCD01069132;AGCD01069133;AGCD01069134;AGCD01069135;AGCD01069136;AGCD01069137;AGCD01069138;AGCD01069139;AGCD01069140;AGCD01069141;AGCD01069142;AGCD01069143;AGCD01069144;AGCD01069145;AGCD01069146;AGCD01069147;AGCD01069148;AGCD01069149;AGCD01069150;AGCD01069151;AGCD01069152;AGCD01069153;AGCD01069154;AGCD01069155;AGCD01069156;AGCD01069157;AGCD01069158;AGCD01069159;AGCD01069160;AGCD01069161;AGCD01069162;AGCD01069163;AGCD01069164;GBDJ01223652;XM_013507344 XP_013362798 MODEL 8977235 protein-coding Ryk receptor like tyrosine kinase ENCODES a protein that exhibits ATP binding (ortholog); frizzled binding (ortholog); protein kinase activity (ortholog); INVOLVED IN axon guidance (ortholog); axonogenesis (ortholog); chemorepulsion of dopaminergic neuron axon (ortholog); ASSOCIATED WITH cleft palate (ortholog); Craniofacial Abnormalities (ortholog); orofacial cleft 1 (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); membrane (ortholog) NW_004955501 4360051 4419083 + 102024706 AGCD01064128;AGCD01064129;GBCE01055771;XM_005406801;XM_013505792;XM_013505793 XP_005406858;XP_013361246;XP_013361247 MODEL 8841169 pseudo LOC102025970 UPF0587 protein C1orf123 pseudogene NW_004955404 33187380 33187862 + 102025970 AGCD01004058 MODEL 8917228 protein-coding Slc18a3 solute carrier family 18 member A3 ENCODES a protein that exhibits acetylcholine transmembrane transporter activity (ortholog); acetylcholine:proton antiporter activity (ortholog); monoamine:proton antiporter activity (ortholog); INVOLVED IN acetylcholine transport (ortholog); acetylcholine uptake (ortholog); neurotransmitter loading into synaptic vesicle (ortholog); PARTICIPATES IN acetylcholine signaling pathway via muscarinic acetylcholine receptor; acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH Alzheimer's disease (ortholog); asthma (ortholog); Binge Drinking (ortholog); FOUND IN perikaryon; AP-1 adaptor complex (ortholog); AP-2 adaptor complex (ortholog) NW_004955556 696779 698869 - 102029334 AGCD01073179;XM_005412568 XP_005412625 MODEL 9021890 pseudo LOC102007053 protein kinase C iota type pseudogene NW_004955530 521029 523694 + 102007053 AGCD01069854;XM_005410110 MODEL 9049626 protein-coding Ptger2 prostaglandin E receptor 2 ENCODES a protein that exhibits prostaglandin E receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cAMP biosynthetic process (ortholog); cAMP metabolic process (ortholog); ASSOCIATED WITH Abscess (ortholog); allergic asthma (ortholog); aspirin-induced respiratory disease (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog); plasma membrane (ortholog); synapse (ortholog) NW_004955409 10760801 10775197 - 102010556 AGCD01009482;AGCD01009483;GBDJ01164140;XM_005376782;XM_005376783;XM_013510326;XM_013510327 XP_005376839;XP_005376840;XP_013365780;XP_013365781 MODEL 39133233 snrna U4 U4 spliceosomal RNA 8859914 protein-coding Smim22 small integral membrane protein 22 INVOLVED IN lipid droplet formation (ortholog); positive regulation of cell migration (ortholog); regulation of actin cytoskeleton organization (ortholog) NW_004955442 12700461 12701283 - 102004013 AGCD01037745;GBDI01078262;XM_005391268;XM_005391269 XP_005391325;XP_005391326 MODEL 10190575 ncrna LOC106147124 uncharacterized LOC106147124 NW_004955520 2824557 2825296 - 106147124 AGCD01068083;XR_001231883 MODEL 8785472 protein-coding Qrich2 glutamine rich 2 INVOLVED IN flagellated sperm motility (ortholog); negative regulation of ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH spermatogenic failure 35 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); sperm flagellum (ortholog) NW_004955506 5990070 6015808 + 102026451 AGCD01065396;AGCD01065397;AGCD01065398;GBDF01010040;XM_013506111;XM_013506112;XM_013506113 XP_013361565;XP_013361566;XP_013361567 MODEL 8969247 protein-coding Wdr45b WD repeat domain 45B ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); TSC1-TSC2 complex binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Neurodevelopmental Disorder with Spastic Quadriplegia and Brain Abnormalities with or without Seizures (ortholog); FOUND IN cytosol (ortholog); lysosome (ortholog); phagophore assembly site (ortholog) NW_004955506 515364 556507 + 102006797 AGCD01065230;AGCD01065231;AGCD01065232;GBDF01081047;XM_005407188 XP_005407245 MODEL 9015525 protein-coding Tigd2 tigger transposable element derived 2 NW_004955405 80872 84184 + 102004447 AGCD01004553;GBDI01262079;XM_013517268 XP_013372722 MODEL 8873585 protein-coding Triml2 tripartite motif family like 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN response to retinoic acid (ortholog) NW_004955403 21089194 21104840 + 102006531 AGCD01002180;GBDF01242145;XM_013514804 XP_013370258 MODEL 9005834 protein-coding Prrt1b proline rich transmembrane protein 1B NW_004955513 1218016 1221299 + 102024491 AGCD01066848;AGCD01066849;GBDF01179957;XM_005408371 XP_005408428 MODEL 8873619 pseudo LOC102008537 60S ribosomal protein L39 pseudogene NW_004955420 7015115 7015474 - 102008537 AGCD01020693;XM_005383030 MODEL 8875025 protein-coding Btd biotinidase ENCODES a protein that exhibits biotinidase activity (ortholog); INVOLVED IN biotin metabolic process (ortholog); PARTICIPATES IN biotin metabolic pathway; biotinidase deficiency pathway; holocarboxylase synthetase deficiency pathway; ASSOCIATED WITH autistic disorder (ortholog); biotin deficiency (ortholog); biotinidase deficiency (ortholog); FOUND IN apical part of cell (ortholog); extracellular region (ortholog); nucleolus (ortholog) NW_004955430 7960036 7988754 + 102022111 AGCD01029378;GBDF01001926;XM_005387438;XM_005387439;XM_005387440;XM_005387441;XM_005387442;XM_005387443;XM_013515701;XM_013515702 XP_005387495;XP_005387496;XP_005387497;XP_005387498;XP_005387499;XP_005387500;XP_013371155;XP_013371156 MODEL 9038956 pseudo LOC102010436 centromere protein L-like NW_004955402 50936205 51007657 + 102010436 AGCD01001288;AGCD01001289 MODEL 8974163 pseudo LOC102017725 prefoldin subunit 6 pseudogene NW_004955592 408866 409682 - 102017725 AGCD01076312 MODEL 8729775 pseudo LOC102019293 elongation factor 1-beta pseudogene NW_004955424 22092321 22093115 - 102019293 AGCD01024931 MODEL 9045560 pseudo LOC102027316 olfactory receptor 5AS1-like NW_004955422 10518 11483 + 102027316 AGCD01022384 MODEL 9063495 protein-coding Pdlim7 PDZ and LIM domain 7 INVOLVED IN actin cytoskeleton organization (ortholog); positive regulation of osteoblast differentiation (ortholog); FOUND IN actin cytoskeleton (ortholog); adherens junction (ortholog); cytoplasm (ortholog) NW_004955408 29718830 29734085 - 102028503 AGCD01008768;AGCD01008769;GBDI01008588;XM_005376443;XM_005376444;XM_005376445;XM_005376446;XM_013506529 XP_005376500;XP_005376501;XP_005376502;XP_005376503;XP_013361983 MODEL 8864864 pseudo LOC102011627 glyceraldehyde-3-phosphate dehydrogenase pseudogene NW_004955456 12484506 12486673 - 102011627 AGCD01046567 MODEL 8848533 protein-coding Sec61g SEC61 translocon subunit gamma ENCODES a protein that exhibits phospholipid binding (ortholog); ribosome binding (ortholog); transmembrane protein transporter activity (ortholog); INVOLVED IN membrane docking (ortholog); protein targeting to ER (ortholog); SRP-dependent cotranslational protein targeting to membrane, translocation (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); membrane (ortholog); Sec61 translocon complex (ortholog) NW_004955456 645607 651764 + 102022883 AGCD01046211;AGCD01046212;GBDF01002701;XM_005396594 XP_005396651 MODEL 9013373 protein-coding Lingo3 leucine rich repeat and Ig domain containing 3 ASSOCIATED WITH myoepithelioma (ortholog) NW_004955495 5850956 5862249 + 102013518 AGCD01062036;AGCD01062037;AGCD01062038;GBCB01056095;GBCB01056097;XM_013505232 XP_013360686 MODEL 8906269 protein-coding LOC102006686 granulocyte-macrophage colony-stimulating factor receptor subunit alpha NW_004955499 987241 1000290 + 102006686 AGCD01063304;AGCD01063305;GBCE01182198;XM_005406506;XM_005406507 XP_005406563;XP_005406564 MODEL 8737297 protein-coding LOC102012822 sulfotransferase family cytosolic 2B member 1-like NW_004955804 1914 12609 + 102012822 AGCD01078378;AGCD01078379;GBCE01003625;XM_005415116 XP_005415173 MODEL 10110829 protein-coding LOC106149963 translation initiation factor IF-2-like NW_004955458 11162068 11162601 - 106149963 AGCD01047726;GBDF01170947;GBDI01387074;XM_013520921 XP_013376375 MODEL 39131383 protein-coding PTGER3 prostaglandin E receptor 3 8989125 protein-coding LOC102009665 antileukoproteinase NW_004955445 12093023 12095345 + 102009665 AGCD01039735;GBDI01080100;XM_013518386 XP_013373840 MODEL 8856550 ncrna LOC102026329 uncharacterized LOC102026329 NW_004955420 11953357 11954948 + 102026329 AGCD01020848;GBDF01004399;XR_260707 MODEL 8891763 protein-coding Smim23 small integral membrane protein 23 NW_004955408 24626468 24633678 + 102022787 AGCD01008621;GBDF01002835;XM_005376330;XM_013507143;XM_013507147 XP_005376387;XP_013362597;XP_013362601 MODEL 8768922 protein-coding LOC102005588 olfactory receptor 51L1-like NW_004955414 21113707 21117034 - 102005588 AGCD01015407;XM_005380493 XP_005380550 MODEL 8900622 protein-coding Rbm26 RNA binding motif protein 26 ASSOCIATED WITH anthracosis (ortholog) NW_004955404 28116009 28198878 + 102008176 AGCD01003945;AGCD01003946;AGCD01003947;GBBH01077994;GBDF01050484;XM_013516361;XM_013516363;XM_013516366;XM_013516370 XP_013371815;XP_013371817;XP_013371820;XP_013371824 MODEL 8992289 protein-coding Slc6a15 solute carrier family 6 member 15 ENCODES a protein that exhibits alanine:sodium symporter activity (ortholog); branched-chain amino acid:sodium symporter activity (ortholog); L-asparagine:sodium symporter activity (ortholog); INVOLVED IN L-leucine transport (ortholog); neutral amino acid transport (ortholog); proline transport (ortholog); FOUND IN membrane (ortholog) NW_004955405 22821931 22846420 - 102004034 AGCD01005106;GBDJ01388542;XM_013518066 XP_013373520 MODEL 8881977 protein-coding LOC102011202 circumsporozoite protein-like NW_004955478 6863782 6864540 - 102011202 AGCD01055921;AGCD01055922;XM_005402156;XM_013503235;XM_013503236;XM_013503237 XP_005402213;XP_013358689;XP_013358690;XP_013358691 MODEL 8710882 protein-coding Tpm1 tropomyosin 1 ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); cytoskeletal protein binding (ortholog); INVOLVED IN actin filament capping (ortholog); cardiac muscle contraction (ortholog); cellular response to reactive oxygen species (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH atrial heart septal defect 1 (ortholog); cardiomyopathy (ortholog); catecholaminergic polymorphic ventricular tachycardia 1 (ortholog); FOUND IN actin cytoskeleton (ortholog); bleb (ortholog); cytoplasm (ortholog) NW_004955450 12197241 12223372 - 102029136 AGCD01042694;AGCD01042695;GBDI01010272;XM_005393795;XM_005393797;XM_005393799;XM_005393800;XM_005393801;XM_013518944;XM_013518945 XP_005393852;XP_005393854;XP_005393856;XP_005393857;XP_005393858;XP_013374398;XP_013374399 MODEL 8885611 protein-coding LOC102010827 olfactory receptor 10V1 NW_004955511 4140948 4141914 - 102010827 AGCD01066493;XM_005408271 XP_005408328 MODEL 8743903 pseudo LOC102029033 olfactory receptor 14C36-like NW_004955630 39267 40233 + 102029033 AGCD01077520 MODEL 8771540 protein-coding Rfx3 regulatory factor X3 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell maturation (ortholog); cilium assembly (ortholog); cilium-dependent cell motility (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); attention deficit hyperactivity disorder (ortholog); autism spectrum disorder (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955434 7635363 7910056 - 102019728 AGCD01032243;AGCD01032244;AGCD01032245;AGCD01032246;AGCD01032247;GBDF01254252;XM_005388617;XM_013516355;XM_013516356;XM_013516357;XM_013516358;XM_013516359;XM_013516360 XP_005388674;XP_013371809;XP_013371810;XP_013371811;XP_013371812;XP_013371813;XP_013371814 MODEL 9031589 pseudo LOC102003820 40S ribosomal protein S16 pseudogene NW_004955579 331808 332248 - 102003820 AGCD01075545 MODEL 8755516 protein-coding Rlig1 RNA 5'-phosphate and 3'-OH ligase 1 ENCODES a protein that exhibits RNA ligase (ATP) activity (ortholog); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); response to reactive oxygen species (ortholog); ASSOCIATED WITH Joubert syndrome 1 (ortholog); Meckel syndrome 1 (ortholog); nephronophthisis (ortholog) NW_004955405 25514644 25533520 + 102009679 AGCD01005177;GBDF01081483;XM_005374420 XP_005374477 MODEL 8947875 protein-coding Slc18b1 solute carrier family 18 member B1 ENCODES a protein that exhibits monoamine:proton antiporter activity (ortholog); polyamine:proton antiporter activity (ortholog); INVOLVED IN serotonin uptake (ortholog); spermidine transport (ortholog); spermine transport (ortholog); FOUND IN secretory granule membrane (ortholog); synaptic vesicle membrane (ortholog) NW_004955436 13286811 13316037 - 102025390 AGCD01033856;GBDK01322576;XM_005389219;XM_013516687;XM_013516688 XP_005389276;XP_013372141;XP_013372142 MODEL 8984108 protein-coding Pdp1 pyruvate dehydrogenase phosphatase catalytic subunit 1 ENCODES a protein that exhibits [pyruvate dehydrogenase (acetyl-transferring)]-phosphatase activity (ortholog); calcium ion binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN peptidyl-threonine dephosphorylation (ortholog); positive regulation of pyruvate decarboxylation to acetyl-CoA (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); obesity (ortholog); Prostatic Neoplasms (ortholog); FOUND IN mitochondrion (ortholog) NW_004955417 10219096 10227483 + 102022287 AGCD01018070;AGCD01018071;GBDF01053364;XM_005381799;XM_005381800;XM_005381801 XP_005381856;XP_005381857;XP_005381858 MODEL 8946755 pseudo LOC102028011 lys-63-specific deubiquitinase BRCC36 pseudogene NW_004955529 1582227 1583024 - 102028011 AGCD01069698 MODEL 10264996 ncrna LOC106147125 uncharacterized LOC106147125 NW_004955520 3906728 3919054 - 106147125 AGCD01068113;GBDF01040809;XR_001231884 MODEL 8982980 protein-coding Tigd3 tigger transposable element derived 3 NW_004955422 19880777 19883567 - 102010815 AGCD01023044;GBDF01055732;XM_005384499 XP_005384556 MODEL 8727339 protein-coding Qrsl1 glutaminyl-tRNA amidotransferase subunit QRSL1 ENCODES a protein that exhibits glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (ortholog); INVOLVED IN glutaminyl-tRNAGln biosynthesis via transamidation (ortholog); mitochondrial translation (ortholog); regulation of protein stability (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 40 (ortholog); genetic disease (ortholog); Mitochondrial Cardiomyopathy (ortholog); FOUND IN glutamyl-tRNA(Gln) amidotransferase complex (ortholog); mitochondrion (ortholog) NW_004955411 31950727 31981522 + 102006992 AGCD01012289;AGCD01012290;GBDF01157003;XM_005377831 XP_005377888 MODEL 8853213 protein-coding Prickle1 prickle planar cell polarity protein 1 ENCODES a protein that exhibits protein-containing complex binding (ortholog); transcription factor binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); anterior visceral endoderm cell migration (ortholog); aorta development (ortholog); PARTICIPATES IN Wnt signaling, the planar cell polarity pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive Robinow syndrome (ortholog); benign epilepsy with centrotemporal spikes (ortholog); FOUND IN cell trailing edge (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955500 1897899 1990791 - 102003891 AGCD01063688;AGCD01063689;AGCD01063690;AGCD01063691;GBDI01107945;XM_005406578;XM_013505663;XM_013505664 XP_005406635;XP_013361117;XP_013361118 MODEL 8762757 pseudo LOC102006688 actin-related protein 2/3 complex subunit 1A pseudogene NW_004955426 11475451 11481911 - 102006688 AGCD01026317 MODEL 8937722 pseudo LOC102018872 ELAV-like protein 1 pseudogene NW_004955574 1566040 1566941 - 102018872 AGCD01075190 MODEL 8827968 protein-coding Trio trio Rho guanine nucleotide exchange factor ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); negative regulation of fat cell differentiation (ortholog); neuron projection morphogenesis (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955426 3647273 3846916 + 102008555 AGCD01026083;AGCD01026084;GBCQ01175997;XM_005386123;XM_013514974 XP_005386180;XP_013370428 MODEL 10278204 ncrna LOC106148220 uncharacterized LOC106148220 NW_004955417 26901786 26903367 + 106148220 AGCD01018521;GBCE01150952;XR_001233470;XR_001233471 MODEL 8900944 protein-coding Plekhb2 pleckstrin homology domain containing B2 ENCODES a protein that exhibits phosphatidylinositol-3,4,5-trisphosphate binding (ortholog) NW_004955459 594794 661152 + 102016896 AGCD01047942;AGCD01047943;AGCD01047944;AGCD01047945;AGCD01047946;AGCD01047947;GBCQ01001045;GBDJ01009535;XM_013521055 XP_013376509 MODEL 8787920 protein-coding Rai1 retinoic acid induced 1 INVOLVED IN circadian regulation of gene expression (ortholog); negative regulation of multicellular organism growth (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH anxiety disorder (ortholog); autism spectrum disorder (ortholog); autosomal recessive nonsyndromic deafness 9 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955577 185404 296613 - 102015065 AGCD01075384;AGCD01075385;AGCD01075386;AGCD01075387;AGCD01075388;GBBH01207954;XM_005413962;XM_005413965;XM_005413966;XM_013509617;XM_013509618;XM_013509619;XR_265076 XP_005414019;XP_005414022;XP_005414023;XP_013365071;XP_013365072;XP_013365073 MODEL 8907186 protein-coding Snx31 sorting nexin 31 FOUND IN protein-containing complex (ortholog) NW_004955417 15779500 15835668 - 102018494 AGCD01018243;GBCE01074372;XM_005381870;XM_013512837;XM_013512838 XP_005381927;XP_013368291;XP_013368292 MODEL 8750099 protein-coding Pcdh12 protocadherin 12 INVOLVED IN calcium-dependent cell-cell adhesion (ortholog); glycogen metabolic process (ortholog); homophilic cell-cell adhesion (ortholog); ASSOCIATED WITH Diencephalic-Mesencephalic Junction Dysplasia Syndrome 1 (ortholog); genetic disease (ortholog); FOUND IN cell-cell junction (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955415 11834007 11848032 + 102029505 AGCD01016178;GBDK01281483;XM_005380715 XP_005380772 MODEL 8936648 pseudo LOC102024525 60 kDa heat shock protein, mitochondrial-like NW_004955452 17463482 17488548 + 102024525 AGCD01044555;AGCD01044556 MODEL 9064792 protein-coding LOC102019294 melanoma-associated antigen 10-like NW_004955498 2586214 2586879 - 102019294 AGCD01062811;XM_005406471 XP_005406528 MODEL 8786173 protein-coding Btf3 basic transcription factor 3 INVOLVED IN in utero embryonic development (ortholog); negative regulation of protein localization to endoplasmic reticulum (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nascent polypeptide-associated complex (ortholog) NW_004955425 27099207 27105644 - 102007789 AGCD01025960;GBDF01008196;XM_005386072;XM_005386073 XP_005386129;XP_005386130 MODEL 39133237 snrna U4 U4 spliceosomal RNA 9061901 pseudo LOC102025974 60S ribosomal protein L7a pseudogene NW_004955453 596129 603760 + 102025974 AGCD01044596;XR_262760 MODEL 8987355 ncrna LOC102027319 uncharacterized LOC102027319 NW_004955496 8203513 8220603 + 102027319 AGCD01062392;AGCD01062393;GBDI01279846;XR_001231403 MODEL 8711305 protein-coding Ryr1 ryanodine receptor 1 ENCODES a protein that exhibits calcium channel activity (ortholog); calcium-induced calcium release activity (ortholog); enzyme binding (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); cellular response to ATP (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH anterior segment dysgenesis (ortholog); anterior segment dysgenesis 7 (ortholog); arthrogryposis multiplex congenita (ortholog); FOUND IN cell cortex (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955468 879807 1000118 - 102016148 AGCD01051742;AGCD01051743;AGCD01051744;AGCD01051745;AGCD01051746;AGCD01051747;AGCD01051748;GBCB01005975;GBDI01002716;XM_013522408 XP_013377862 MODEL 8962214 protein-coding LOC102021787 olfactory receptor 8K3-like NW_004955511 5111091 5112029 + 102021787 AGCD01066549;XM_013506405 XP_013361859 MODEL 8842458 pseudo LOC102011628 26S proteasome non-ATPase regulatory subunit 14-like NW_004955457 7388758 7389844 + 102011628 AGCD01046877 MODEL 8956350 protein-coding LOC102030451 olfactory receptor 8K3-like NW_004955511 1341184 1342123 + 102030451 AGCD01066365;XM_013506407 XP_013361861 MODEL 8701279 protein-coding Sec62 SEC62 homolog, preprotein translocation factor INVOLVED IN post-translational protein targeting to endoplasmic reticulum membrane (ortholog); post-translational protein targeting to membrane, translocation (ortholog); reticulophagy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955420 219909 247471 + 102015850 AGCD01020538;AGCD01020539;GBDI01002283;XM_005382962 XP_005383019 MODEL 8781131 ncrna LOC102028667 uncharacterized LOC102028667 NW_004955430 738797 741890 - 102028667 AGCD01029103;GBDF01147893;XR_261400 MODEL 8786671 ncrna LOC102023528 uncharacterized LOC102023528 NW_004955542 1901156 1906767 + 102023528 AGCD01071507;AGCD01071508;GBDJ01283811;XR_001232146;XR_264858 MODEL 8710588 protein-coding Sez6l seizure related 6 homolog like INVOLVED IN activation of protein kinase C activity (ortholog); adult locomotory behavior (ortholog); cerebellar Purkinje cell layer development (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN endoplasmic reticulum (ortholog); glutamatergic synapse (ortholog); neuronal cell body (ortholog) NW_004955455 816129 992776 + 102013250 AGCD01045565;AGCD01045566;AGCD01045567;GBDF01112713;XM_005396140;XM_013520286 XP_005396197;XP_013375740 MODEL 8699639 protein-coding LOC102008539 sodium- and chloride-dependent transporter XTRP3A-like NW_004955420 26201378 26228005 + 102008539 AGCD01021392;AGCD01021393;AGCD01021394;AGCD01021395;GBCQ01102604;XM_013513346 XP_013368800 MODEL 8719809 protein-coding Prrt2 proline rich transmembrane protein 2 ENCODES a protein that exhibits SH3 domain binding (ortholog); INVOLVED IN negative regulation of short-term synaptic potentiation (ortholog); negative regulation of SNARE complex assembly (ortholog); neuromuscular process controlling posture (ortholog); ASSOCIATED WITH benign familial infantile seizures 2 (ortholog); cerebrotendinous xanthomatosis (ortholog); epilepsy (ortholog); FOUND IN axon terminus (ortholog); glutamatergic synapse (ortholog); membrane (ortholog) NW_004955493 7144389 7148613 - 102008740 AGCD01061156;GBCC01002602;XM_013504775;XM_013504776;XM_013504777;XM_013504778 XP_013360229;XP_013360230;XP_013360231;XP_013360232 MODEL 39131917 snorna SNORA70 Small nucleolar RNA SNORA70 8996557 ncrna LOC102015826 uncharacterized LOC102015826 NW_004955413 16848152 16865614 - 102015826 AGCD01014117;GBCQ01176213;XR_001233041;XR_001233042;XR_260082 MODEL 8792107 protein-coding Smim24 small integral membrane protein 24 NW_004955495 5083596 5086321 + 102020683 AGCD01061973;GBDJ01166045;XM_005405837 XP_005405894 MODEL 9044848 pseudo LOC102026331 serine/threonine-protein kinase VRK2 pseudogene NW_004955490 6092823 6093397 - 102026331 AGCD01060216 MODEL 8902881 protein-coding LOC102010437 vomeronasal type-1 receptor 4-like NW_004955603 500248 501171 - 102010437 AGCD01076850;XM_005414846 XP_005414903 MODEL 8778498 protein-coding LOC102017726 chromosome unknown open reading frame, human C20orf202 NW_004955596 429206 445151 + 102017726 AGCD01076517;AGCD01076518;AGCD01076519;XM_005414711 XP_005414768 MODEL 9052322 protein-coding Eno4 enolase 4 ENCODES a protein that exhibits phosphopyruvate hydratase activity (ortholog); INVOLVED IN cilium organization (ortholog); flagellated sperm motility (ortholog); glycolytic process (ortholog); ASSOCIATED WITH male infertility (ortholog); FOUND IN sperm principal piece (ortholog) NW_004955431 21625808 21650282 + 102024713 AGCD01030496;GBCE01181692;XM_005387856;XM_005387858;XM_005387859 XP_005387913;XP_005387915;XP_005387916 MODEL 8721704 ncrna LOC102005589 uncharacterized LOC102005589 NW_004955415 23433810 23434272 + 102005589 AGCD01016554;GBDF01207363;XR_260313 MODEL 8991063 protein-coding Ppm1a protein phosphatase, Mg2+/Mn2+ dependent 1A ENCODES a protein that exhibits calmodulin-dependent protein phosphatase activity (ortholog); phosphoprotein phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN cellular response to transforming growth factor beta stimulus (ortholog); N-terminal protein myristoylation (ortholog); negative regulation of BMP signaling pathway (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; FOUND IN cytosol (ortholog); membrane (ortholog); neuron projection (ortholog) NW_004955466 9315227 9331213 - 102018273 AGCD01051034;GBCQ01042357;GBDF01218126;XM_013521996 XP_013377450 MODEL 8912391 protein-coding Tigd4 tigger transposable element derived 4 NW_004955471 7221636 7238289 - 102028953 AGCD01053142;AGCD01053143;GBCB01089350;XM_005400910;XM_013522901;XM_013522902 XP_005400967;XP_013378355;XP_013378356 MODEL 8878256 protein-coding Slc6a16 solute carrier family 6 member 16 ENCODES a protein that exhibits AP-3 adaptor complex binding (ortholog) NW_004955559 1493030 1509213 + 102021607 AGCD01073647;GBDF01044814;XM_013508998 XP_013364452 MODEL 9041710 ncrna LOC102010830 uncharacterized LOC102010830 NW_004955513 2631451 2640898 - 102010830 AGCD01066883;GBDF01209406;XR_264458 MODEL 8831336 protein-coding Tpm2 tropomyosin 2 ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); identical protein binding (ortholog); INVOLVED IN regulation of ATP-dependent activity (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); congenital myopathy 23 (ortholog); congenital myopathy 4A (ortholog); FOUND IN actin cytoskeleton (ortholog) NW_004955472 611079 617823 + 102010052 AGCD01053342;GBBH01001449;GBCB01010777;XM_013522938;XM_013522939;XM_013522941;XM_013522942 XP_013378392;XP_013378393;XP_013378395;XP_013378396 MODEL 8707944 protein-coding Lingo4 leucine rich repeat and Ig domain containing 4 ASSOCIATED WITH polymicrogyria (ortholog) NW_004955589 618959 623915 + 102013567 AGCD01076179;GBDF01150351;XM_005414547 XP_005414604 MODEL 8705121 protein-coding LOC102012823 inositol-3-phosphate synthase 1-like NW_004958180 30 610 + 102012823 AGCD01081576;GBBH01061916;XM_005415238 XP_005415295 MODEL 8770172 protein-coding Wdr46 WD repeat domain 46 INVOLVED IN ribosomal small subunit biogenesis (ortholog); ASSOCIATED WITH Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN nucleolus (ortholog); small-subunit processome (ortholog) NW_004955437 1840875 1848258 - 102030345 AGCD01034239;GBDF01087150;XM_013516886 XP_013372340 MODEL 8921979 protein-coding Btf3l4 basic transcription factor 3 like 4 NW_004955464 7044634 7069593 - 102022796 AGCD01050053;GBCE01116828;XM_005398593;XM_005398594;XM_005398595 XP_005398650;XP_005398651;XP_005398652 MODEL 8755411 protein-coding Ptger3 prostaglandin E receptor 3 ENCODES a protein that exhibits prostaglandin E receptor activity (ortholog); INVOLVED IN adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); bicarbonate transport (ortholog); cAMP biosynthetic process (ortholog); ASSOCIATED WITH allergic asthma (ortholog); asthma (ortholog); Brain Injuries (ortholog); FOUND IN brush border membrane (ortholog); cell surface (ortholog); neuronal cell body (ortholog) NW_004955423 21096926 21164435 + 102004944 AGCD01023935;GBDF01208544;XM_005385244 XP_005385301 MODEL 8983318 protein-coding Rfx4 regulatory factor X4 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cerebellar cortex morphogenesis (ortholog); cilium assembly (ortholog); dorsal spinal cord development (ortholog); FOUND IN nucleus (ortholog) NW_004955405 40483391 40648992 + 102022457 AGCD01005518;AGCD01005519;AGCD01005520;AGCD01005521;AGCD01005522;GBDF01004566;XM_005374622;XM_005374623;XM_005374624;XM_005374625 XP_005374679;XP_005374680;XP_005374681;XP_005374682 MODEL 8973920 protein-coding LOC102009673 E3 ubiquitin-protein ligase UHRF1 NW_004955777 1489 17093 + 102009673 AGCD01078327;GBDF01156556;GBDF01156558;XM_005415110 XP_005415167 MODEL 8762758 pseudo LOC102007056 protein CDV3 pseudogene NW_004955437 733515 734520 - 102007056 AGCD01034158 MODEL 8734106 ncrna LOC102006691 uncharacterized LOC102006691 NW_004955506 1675374 1677648 - 102006691 AGCD01065272;GBDI01279025;XR_264324 MODEL 10172430 protein-coding LOC106148221 isochorismatase domain-containing protein 1-like NW_004955417 31536620 31552579 + 106148221 AGCD01018655;GBCB01098051;XM_013512865 XP_013368319 MODEL 8907865 protein-coding Wdr47 WD repeat domain 47 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); anterior commissure morphogenesis (ortholog); autophagy (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN axon (ortholog); cell body (ortholog); cytoplasm (ortholog) NW_004955435 12414964 12479883 - 102022322 AGCD01033147;AGCD01033148;GBDI01324335;XM_005388841;XM_013516532;XM_013516533;XM_013516534;XM_013516535;XM_013516536 XP_005388898;XP_013371986;XP_013371987;XP_013371988;XP_013371989;XP_013371990 MODEL 8999710 ncrna LOC102019297 uncharacterized LOC102019297 NW_004955427 11260026 11277529 - 102019297 AGCD01027179;AGCD01027180;AGCD01027181;GBBH01138238;XR_001234355;XR_261252 MODEL 8801845 protein-coding Rai14 retinoic acid induced 14 FOUND IN anchoring junction (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955426 19831811 19980717 + 102029537 AGCD01026554;AGCD01026555;AGCD01026556;AGCD01026557;AGCD01026558;AGCD01026559;AGCD01026560;GBBH01006738;XM_005386173;XM_005386174;XM_005386175;XM_013514963 XP_005386230;XP_005386231;XP_005386232;XP_013370417 MODEL 8790356 protein-coding LOC102003821 HLA class I histocompatibility antigen, B-14 alpha chain-like NW_004955583 520916 524888 + 102003821 AGCD01075833;AGCD01075834;GBBH01118053;XM_013509777 XP_013365231 MODEL 8849398 protein-coding Rlim ring finger protein, LIM domain interacting ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); protein ubiquitination (ortholog); random inactivation of X chromosome (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); non-syndromic X-linked intellectual disability (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955562 508723 531699 - 102024290 AGCD01073927;GBCQ01128280;XM_005413083;XM_005413084;XM_013509117;XM_013509118;XM_013509119 XP_005413140;XP_005413141;XP_013364571;XP_013364572;XP_013364573 MODEL 8927481 protein-coding Ryr2 ryanodine receptor 2 ENCODES a protein that exhibits calcium channel activity (ortholog); calcium-induced calcium release activity (ortholog); calmodulin binding (ortholog); INVOLVED IN calcium ion export (ortholog); calcium ion transmembrane import into cytosol (ortholog); calcium ion transmembrane transport (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); arrhythmogenic right ventricular dysplasia 1 (ortholog); arrhythmogenic right ventricular dysplasia 9 (ortholog); FOUND IN A band (ortholog); calcium channel complex (ortholog); extrinsic component of cytoplasmic side of plasma membrane (ortholog) NW_004955492 2647597 3275512 - 102016064 AGCD01060680;AGCD01060681;AGCD01060682;AGCD01060683;AGCD01060684;AGCD01060685;AGCD01060686;AGCD01060687;AGCD01060688;AGCD01060689;AGCD01060690;AGCD01060691;AGCD01060692;AGCD01060693;GBCE01082492;GBDJ01219452;XM_013504700;XM_013504701;XM_013504702;XM_013504703;XM_013504704;XM_013504705;XM_013504706 XP_013360154;XP_013360155;XP_013360156;XP_013360157;XP_013360158;XP_013360159;XP_013360160 MODEL 9026612 protein-coding Pdp2 pyruvate dehyrogenase phosphatase catalytic subunit 2 ENCODES a protein that exhibits [pyruvate dehydrogenase (acetyl-transferring)]-phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN peptidyl-threonine dephosphorylation (ortholog); response to starvation (ortholog); T-helper cell differentiation (ortholog); PARTICIPATES IN pyruvate metabolic pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); prostate cancer (ortholog); FOUND IN mitochondrion (ortholog) NW_004955433 23392193 23396229 + 102024498 AGCD01031959;GBCQ01062937;XM_005388477;XM_005388478;XM_005388479;XM_005388480 XP_005388534;XP_005388535;XP_005388536;XP_005388537 MODEL 8845758 protein-coding LOC102011631 solute carrier family 40 member 1-like NW_004955410 25194888 25237636 - 102011631 AGCD01011145;GBDK01125549;XM_013510582 XP_013366036 MODEL 8948031 protein-coding Lins1 lines homolog 1 INVOLVED IN cognition (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive intellectual developmental disorder 27 (ortholog); genetic disease (ortholog) NW_004955416 27585172 27609780 - 102007659 AGCD01017618;GBDK01117296;XM_005381639 XP_005381696 MODEL 8944536 protein-coding Sec63 SEC63 homolog, protein translocation regulator INVOLVED IN liver development (ortholog); nitrogen cycle metabolic process (ortholog); post-translational protein targeting to endoplasmic reticulum membrane (ortholog); ASSOCIATED WITH autosomal dominant tubulointerstitial kidney disease 2 (ortholog); genetic disease (ortholog); Glanzmann Thrombasthenia 2 (ortholog); FOUND IN endoplasmic reticulum (ortholog); membrane (ortholog) NW_004955411 33063056 33126325 - 102010137 AGCD01012343;AGCD01012344;GBDF01083376;XM_005377841 XP_005377898 MODEL 8729035 protein-coding Rbm27 RNA binding motif protein 27 NW_004955415 7829022 7901617 - 102016698 AGCD01016058;GBDI01261789;XM_005380675;XM_005380676;XM_005380677;XM_005380678 XP_005380732;XP_005380733;XP_005380734;XP_005380735 MODEL 8867389 ncrna LOC102018873 uncharacterized LOC102018873 NW_004955402 23899043 23959834 + 102018873 AGCD01000634;GBDF01014734;XR_259065 MODEL 8916035 pseudo LOC102011203 multifunctional protein ADE2 pseudogene NW_004955481 3893416 3894341 + 102011203 AGCD01056921;XR_263775 MODEL 8921307 ncrna LOC102008548 uncharacterized LOC102008548 NW_004955423 309053 319789 + 102008548 AGCD01023411;GBDF01260789;XR_260936 MODEL 8986317 ncrna LOC102015834 uncharacterized LOC102015834 NW_004955472 3820469 3824070 + 102015834 AGCD01053522;GBDF01306419;XR_263550 MODEL 9006941 protein-coding Trip10 thyroid hormone receptor interactor 10 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN epithelial to mesenchymal transition (ortholog); negative regulation of cardiac muscle cell apoptotic process (ortholog); positive regulation of cell growth involved in cardiac muscle cell development (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin signaling pathway; ASSOCIATED WITH Diabetic Nephropathies (ortholog); Huntington's disease (ortholog) NW_004955495 2770449 2780650 - 102005157 AGCD01061799;GBCE01028494;XM_005405695;XM_005405697 XP_005405752;XP_005405754 MODEL 8911182 protein-coding Pcdh15 protocadherin related 15 INVOLVED IN actin filament bundle assembly (ortholog); actin filament organization (ortholog); adult walking behavior (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 23 (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); photoreceptor outer segment (ortholog) NW_004955425 8443523 9203177 - 102007917 AGCD01025407;AGCD01025408;AGCD01025409;AGCD01025410;AGCD01025411;AGCD01025412;AGCD01025413;AGCD01025414;AGCD01025415;AGCD01025416;AGCD01025417;AGCD01025418;AGCD01025419;AGCD01025420;GBDF01277720;XM_013514752 XP_013370206 MODEL 9003446 protein-coding LOC102024531 PC-esterase domain-containing protein 1A-like NW_004955457 2923724 2925741 - 102024531 AGCD01046755;AGCD01046756;GBDF01209626;XM_013520735 XP_013376189 MODEL 8980488 pseudo LOC102029035 heterogeneous nuclear ribonucleoprotein A3 pseudogene NW_004955403 14557892 14560961 - 102029035 AGCD01002025 MODEL 8985921 ncrna LOC102027321 uncharacterized LOC102027321 NW_004955425 17779560 17780605 + 102027321 AGCD01025648;GBDF01193386;XR_261155 MODEL 8930553 ncrna LOC102010832 uncharacterized LOC102010832 NW_004955437 2142308 2145021 + 102010832 AGCD01034260;GBDF01276932;XR_261830 MODEL 8828174 protein-coding Slc19a1 solute carrier family 19 member 1 ENCODES a protein that exhibits 2',3'-cyclic GMP-AMP binding (ortholog); antiporter activity (ortholog); cyclic-GMP-AMP transmembrane transporter activity (ortholog); INVOLVED IN cyclic-GMP-AMP transmembrane import across plasma membrane (ortholog); female pregnancy (ortholog); folate import across plasma membrane (ortholog); PARTICIPATES IN folate cycle metabolic pathway; folate metabolic pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); acute lymphoblastic leukemia (ortholog); adenoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog) NW_004955407 42132216 42154252 - 102013801 AGCD01007885;GBBH01088077;XM_005375919;XM_005375920;XM_013505554;XM_013505559;XM_013505567;XM_013505573;XM_013505575;XM_013505579;XM_013505583;XM_013505590;XM_013505595;XM_013505600;XM_013505606;XM_013505612;XM_013505619;XM_013505628;XM_013505630;XM_013505636;XM_013505639;XM_013505642 XP_005375976;XP_005375977;XP_013361008;XP_013361013;XP_013361021;XP_013361027;XP_013361029;XP_013361033;XP_013361037;XP_013361044;XP_013361049;XP_013361054;XP_013361060;XP_013361066;XP_013361073;XP_013361082;XP_013361084;XP_013361090;XP_013361093;XP_013361096 MODEL 8816142 ncrna LOC102029042 uncharacterized LOC102029042 NW_004955454 12087932 12090681 - 102029042 AGCD01045404;GBBH01049706;XR_001236211;XR_001236212;XR_001236213;XR_262785;XR_262786;XR_262787 MODEL 8827423 protein-coding LOC102021788 major urinary protein-like NW_004955513 4818849 4823574 - 102021788 AGCD01066940;GBDK01223614;XM_005408549 XP_005408606 MODEL 9058472 protein-coding LOC102006693 cytochrome P450 2C26-like NW_004955507 1438970 1475012 + 102006693 AGCD01065558;AGCD01065559;AGCD01065560;AGCD01065561;GBDJ01058629;XM_013506234 XP_013361688 MODEL 8804036 protein-coding Sez6l2 seizure related 6 homolog like 2 INVOLVED IN activation of protein kinase C activity (ortholog); adult locomotory behavior (ortholog); cerebellar Purkinje cell layer development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); spondylocostal dysostosis 5 (ortholog); syndromic microphthalmia 5 (ortholog); FOUND IN endoplasmic reticulum (ortholog); neuronal cell body (ortholog) NW_004955493 7059865 7080524 + 102004291 AGCD01061154;GBCE01082309;XM_005405222;XM_005405223;XM_013504789;XM_013504790 XP_005405279;XP_005405280;XP_013360243;XP_013360244 MODEL 8769283 protein-coding Btg1 BTG anti-proliferation factor 1 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); positive regulation of angiogenesis (ortholog); positive regulation of endothelial cell differentiation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); multiple myeloma (ortholog); protein-energy malnutrition (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955405 29206889 29209407 - 102021082 AGCD01005248;GBCB01021122;XM_005374452 XP_005374509 MODEL 39131335 protein-coding SMIM27 small integral membrane protein 27 8914210 protein-coding Plekhd1 pleckstrin homology and coiled-coil domain containing D1 ASSOCIATED WITH Breast Neoplasms (ortholog) NW_004955466 853902 878813 - 102015091 AGCD01050680;GBCB01056747;GBCE01126830;XM_013521969 XP_013377423 MODEL 8836957 protein-coding LOC102017730 UPF0577 protein KIAA1324-like homolog NW_004955621 163161 230801 + 102017730 AGCD01077376;AGCD01077377;GBDF01190085;GBDK01420995;XM_013510156 XP_013365610 MODEL 8839383 protein-coding LOC102026334 putative RNA-binding protein Luc7-like 2 NW_004955494 3644615 3710766 - 102026334 AGCD01061477;AGCD01061478;AGCD01061479;GBDI01082728;XM_005405438;XM_005405439;XM_005405440;XM_005405441;XM_013504953;XM_013504954;XM_013504955;XM_013504958;XM_013504959;XM_013504960;XM_013504961 XP_005405495;XP_005405496;XP_005405497;XP_005405498;XP_013360407;XP_013360408;XP_013360409;XP_013360412;XP_013360413;XP_013360414;XP_013360415 MODEL 10243474 ncrna LOC106149964 uncharacterized LOC106149964 NW_004955402 8012332 8032846 + 106149964 AGCD01000189;GBDF01059519;XR_001236462 MODEL 39133238 snrna U4 U4 spliceosomal RNA 8730478 protein-coding Rbm28 RNA binding motif protein 28 PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH alopecia, neurologic defects, and endocrinopathy syndrome (ortholog); microcephaly (ortholog); FOUND IN nucleolus (ortholog) NW_004955479 9319132 9350261 - 102025576 AGCD01056458;AGCD01056459;AGCD01056460;GBBH01198087;GBDK01360890;XM_013503290 XP_013358744 MODEL 8716117 pseudo LOC102008549 nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 pseudogene NW_004955495 3015938 3016703 + 102008549 AGCD01061815 MODEL 8938460 protein-coding Tigd5 tigger transposable element derived 5 NW_004955454 2299244 2304795 + 102023225 AGCD01045015;GBCE01018783;XM_013520026 XP_013375480 MODEL 8880208 ncrna LOC102030454 uncharacterized LOC102030454 NW_004955430 11070324 11085562 + 102030454 AGCD01029441;GBDI01231040;XR_261426 MODEL 8750080 pseudo LOC102028013 protein Asterix pseudogene NW_004955437 6265334 6265989 - 102028013 AGCD01034426;XM_005389648 MODEL 8898706 protein-coding Tpm3 tropomyosin 3 ENCODES a protein that exhibits actin filament binding (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN brush border (ortholog); cleavage furrow (ortholog); cortical cytoskeleton (ortholog) NW_004955545 715860 746580 - 102027114 AGCD01071815;GBBH01031876;XM_005411467;XM_005411469;XM_005411470;XM_005411472;XM_005411473;XM_005411474;XM_005411475;XM_005411476;XM_005411478;XM_005411479;XM_005411481;XM_013508242;XM_013508243;XM_013508244;XM_013508245 XP_005411524;XP_005411526;XP_005411527;XP_005411529;XP_005411530;XP_005411531;XP_005411532;XP_005411533;XP_005411535;XP_005411536;XP_005411538;XP_013363696;XP_013363697;XP_013363698;XP_013363699 MODEL 8866355 pseudo LOC102009680 60S ribosomal protein L13a pseudogene NW_004955452 571667 572274 - 102009680 AGCD01043817;AGCD01043818 MODEL 8973019 ncrna LOC102010438 uncharacterized LOC102010438 NW_004955649 5929 9935 + 102010438 AGCD01077777;AGCD01077778;GBDJ01151562;XR_265178 MODEL 8784587 protein-coding Prickle2 prickle planar cell polarity protein 2 INVOLVED IN blastocyst formation (ortholog); embryonic brain development (ortholog); establishment or maintenance of epithelial cell apical/basal polarity (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder (ortholog); benign epilepsy with centrotemporal spikes (ortholog); epilepsy (ortholog); FOUND IN apicolateral plasma membrane (ortholog); axon (ortholog); axon initial segment (ortholog) NW_004955517 1501322 1806996 + 102017152 AGCD01067600;AGCD01067601;AGCD01067602;AGCD01067603;AGCD01067604;AGCD01067605;AGCD01067606;AGCD01067607;GBBH01037181;GBBH01037182;XM_013506943 XP_013362397 MODEL 9012143 protein-coding Ptger4 prostaglandin E receptor 4 ENCODES a protein that exhibits prostaglandin E receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); allergic asthma (ortholog); Alzheimer's disease (ortholog); FOUND IN neuron projection terminus (ortholog); neuronal cell body (ortholog); nuclear membrane (ortholog) NW_004955426 24997811 25010822 + 102024139 AGCD01026701;GBDF01055599;XM_005386240 XP_005386297 MODEL 8812392 protein-coding Snx33 sorting nexin 33 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cleavage furrow formation (ortholog); endocytosis (ortholog); endosomal transport (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955450 2669993 2682503 - 102025744 AGCD01042393;AGCD01042394;GBCQ01127590;XM_005393502 XP_005393559 MODEL 8740288 protein-coding Rfx5 regulatory factor X5 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of MHC class II biosynthetic process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH MHC class II deficiency (ortholog); MHC CLASS II DEFICIENCY 1 (ortholog); MHC CLASS II DEFICIENCY 3 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955588 687086 695696 - 102004022 AGCD01076118;GBCQ01031430;XM_005414519;XM_005414520;XM_005414522;XM_005414523;XM_013509923;XM_013509924;XM_013509925 XP_005414576;XP_005414577;XP_005414579;XP_005414580;XP_013365377;XP_013365378;XP_013365379 MODEL 8765502 protein-coding Enoph1 enolase-phosphatase 1 ENCODES a protein that exhibits acireductone synthase activity (ortholog); INVOLVED IN L-methionine cycle (ortholog); ASSOCIATED WITH pneumoconiosis (ortholog) NW_004955433 6522663 6549352 + 102006942 AGCD01031540;AGCD01031541;GBBH01186039;GBDI01188550;XM_005388244 XP_005388301 MODEL 8811883 ncrna LOC102005590 uncharacterized LOC102005590 NW_004955479 2051181 2061238 - 102005590 AGCD01056261;GBDF01038985;XR_001230885;XR_001230886 MODEL 8805499 protein-coding Ppm1b protein phosphatase, Mg2+/Mn2+ dependent 1B ENCODES a protein that exhibits phosphoprotein phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN N-terminal protein myristoylation (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of defense response to virus (ortholog); ASSOCIATED WITH hypotonia-cystinuria syndrome (ortholog); Lynch syndrome (ortholog); Myocardial Ischemia (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog) NW_004955441 11276525 11338586 + 102029903 AGCD01037107;GBDF01043427;GBDF01043428;XM_005390941 XP_005390998 MODEL 8730997 pseudo LOC102015844 60S ribosomal protein L4 pseudogene NW_004955418 30566655 30589110 - 102015844 AGCD01019529;AGCD01019530;AGCD01019531;AGCD01019532;AGCD01019533;AGCD01019534 MODEL 8840768 protein-coding Btg2 BTG anti-proliferation factor 2 ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); associative learning (ortholog); cellular response to phorbol 13-acetate 12-myristate (ortholog); ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); brain ischemia (ortholog); breast cancer (ortholog) NW_004955406 39303221 39307308 + 102011732 AGCD01006625;GBCE01078173;XM_005375265 XP_005375322 MODEL 8891853 protein-coding LOC102028672 WW domain-binding protein 5-like NW_004955516 2398397 2399314 - 102028672 AGCD01067455;XM_013506906 XP_013362360 MODEL 10390358 protein-coding LOC106147126 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like NW_004955521 1144856 1198489 + 106147126 AGCD01068174;AGCD01068175;AGCD01068176;AGCD01068177;GBDF01023350;GBDJ01208996;XM_013507078 XP_013362532 MODEL 9002678 protein-coding Qser1 glutamine and serine rich 1 FOUND IN chromosome (ortholog) NW_004955422 13207000 13287585 - 102025916 AGCD01022815;AGCD01022816;AGCD01022817;GBCE01001035;GBDF01236338;XM_005384170 XP_005384227 MODEL 8753220 pseudo LOC102026335 small nuclear ribonucleoprotein-associated protein B pseudogene NW_004955422 25828481 25829377 - 102026335 AGCD01023269 MODEL 8888714 protein-coding Pcdh17 protocadherin 17 INVOLVED IN adult behavior (ortholog); negative regulation of synaptic transmission (ortholog); presynaptic active zone assembly (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); postsynaptic membrane (ortholog) NW_004955404 46795303 46886918 - 102006628 AGCD01004470;AGCD01004471;AGCD01004472;GBDI01105830;XM_013516708;XM_013516710;XM_013516713;XM_013516718;XM_013516720 XP_013372162;XP_013372164;XP_013372167;XP_013372172;XP_013372174 MODEL 9009387 protein-coding LOC102005594 olfactory receptor 1L6-like NW_004955419 5236631 5237566 - 102005594 AGCD01019793;XM_005382523 XP_005382580 MODEL 9063101 protein-coding Prrt3 proline rich transmembrane protein 3 NW_004955561 1430767 1437981 - 102014838 AGCD01073855;GBBH01213526;XM_005413055;XM_005413056;XM_005413057;XM_005413058 XP_005413112;XP_005413113;XP_005413114;XP_005413115 MODEL 8742739 ncrna LOC102003823 uncharacterized LOC102003823 NW_004955403 768478 771303 + 102003823 AGCD01001708;GBDI01035702;XR_259130 MODEL 8885335 protein-coding Rai2 retinoic acid induced 2 ASSOCIATED WITH dextrocardia (ortholog) NW_004955519 494463 553839 + 102030562 AGCD01067876;AGCD01067877;GBCE01153611;GBDJ01234060;XM_005409127 XP_005409184 MODEL 9054996 protein-coding Rln3 relaxin 3 ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); ASSOCIATED WITH Hyperplasia (ortholog); Myocardial Ischemia (ortholog) NW_004955415 32747362 32749338 + 102010155 AGCD01016732;GBBH01048357;XM_005381083 XP_005381140 MODEL 9026065 protein-coding LOC102030456 uncharacterized LOC102030456 NW_004955430 2043290 2050418 + 102030456 AGCD01029147;AGCD01029148;XM_013515566 XP_013371020 MODEL 8914093 pseudo LOC102010833 ADP-ribosylation factor-like protein 2-binding protein pseudogene NW_004955532 3917497 3917975 - 102010833 AGCD01070305 MODEL 8849920 pseudo LOC102011632 dnaJ homolog subfamily B member 6-like NW_004955410 15884222 15890903 + 102011632 AGCD01010941 MODEL 9048828 pseudo LOC102021796 ras-related protein Ral-A pseudogene NW_004955436 344054 347031 - 102021796 AGCD01033541 MODEL 8995179 protein-coding Ryr3 ryanodine receptor 3 ENCODES a protein that exhibits calcium-induced calcium release activity (ortholog); intracellularly gated calcium channel activity (ortholog); ryanodine-sensitive calcium-release channel activity (ortholog); INVOLVED IN calcium ion transport (ortholog); intracellular calcium ion homeostasis (ortholog); negative regulation of cytosolic calcium ion concentration (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH colorectal cancer (ortholog); congenital myopathy 20 (ortholog); Contracture (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); junctional membrane complex (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955416 712506 1260111 - 102024222 AGCD01016819;AGCD01016820;AGCD01016821;AGCD01016822;AGCD01016823;AGCD01016824;AGCD01016825;AGCD01016826;AGCD01016827;AGCD01016828;AGCD01016829;AGCD01016830;AGCD01016831;GBDJ01280043;XM_005381167 XP_005381224 MODEL 8925112 protein-coding Pdpk1 3-phosphoinositide dependent protein kinase 1 ENCODES a protein that exhibits 3-phosphoinositide-dependent protein kinase activity (ortholog); insulin receptor binding (ortholog); phospholipase activator activity (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); cell migration (ortholog); cellular response to brain-derived neurotrophic factor stimulus (ortholog); PARTICIPATES IN adenosine signaling pathway; angiotensin II signaling pathway; FasL mediated signaling pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); congestive heart failure (ortholog); diffuse large B-cell lymphoma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955442 14685089 14772870 - 102020615 AGCD01037832;AGCD01037833;AGCD01037834;AGCD01037835;AGCD01037836;AGCD01037837;AGCD01037838;AGCD01037839;GBCB01023925;XM_005391417;XM_005391418;XM_005391419;XM_005391420;XM_013517782;XM_013517783 XP_005391474;XP_005391475;XP_005391476;XP_005391477;XP_013373236;XP_013373237 MODEL 8856266 protein-coding Lipa lipase A, lysosomal acid type ENCODES a protein that exhibits lipase activity (ortholog); sterol ester esterase activity (ortholog); INVOLVED IN acute inflammatory response (ortholog); adaptive thermogenesis (ortholog); adipose tissue development (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; ASSOCIATED WITH cholesterol ester storage disease (ortholog); coronary artery disease (ortholog); COVID-19 (ortholog); FOUND IN lysosome (ortholog) NW_004955425 3718291 3755942 + 102017893 AGCD01025295;AGCD01025296;GBDJ01138736;XM_005385854;XM_005385855 XP_005385911;XP_005385912 MODEL 9052015 ncrna LOC102011204 uncharacterized LOC102011204 NW_004955418 503166 505034 - 102011204 AGCD01018678;GBDF01041809;XR_260531 MODEL 8766057 protein-coding LOC102025975 lymphocyte antigen 6F NW_004955454 1875022 1878705 + 102025975 AGCD01044991;GBDF01043166;XM_005395755 XP_005395812 MODEL 8978668 protein-coding Slc6a17 solute carrier family 6 member 17 INVOLVED IN alanine transport (ortholog); brain development (ortholog); glycine transport (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 48 (ortholog); long QT syndrome (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); synapse (ortholog) NW_004955435 13668690 13717401 + 102015885 AGCD01033208;AGCD01033209;AGCD01033210;GBCQ01085126;XM_005388913;XM_013516399 XP_005388970;XP_013371853 MODEL 8838948 ncrna LOC102010442 uncharacterized LOC102010442 NW_004955452 2929736 2933649 - 102010442 AGCD01043906;GBDF01177228;XR_262642 MODEL 8974410 pseudo LOC102023530 speckle-type POZ protein A-like NW_004955546 148556 149744 + 102023530 AGCD01071954 MODEL 8788169 protein-coding Sf1 splicing factor 1 ENCODES a protein that exhibits identical protein binding (ortholog); RNA binding (ortholog); INVOLVED IN Leydig cell differentiation (ortholog); male sex determination (ortholog); negative regulation of smooth muscle cell proliferation (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH ischemia (ortholog); melanoma (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); spliceosomal complex (ortholog) NW_004955422 20391340 20406555 + 102028550 AGCD01023078;AGCD01023079;GBCE01029052;GBDI01001163;XM_013514043;XM_013514044;XM_013514045;XM_013514046 XP_013369497;XP_013369498;XP_013369499;XP_013369500 MODEL 8832637 ncrna LOC102024533 uncharacterized LOC102024533 NW_004955408 35437922 35476125 - 102024533 AGCD01008943;AGCD01008944;AGCD01008945;AGCD01008946;GBDJ01064858;XR_259733 MODEL 8716895 protein-coding LOC102017731 arylamine N-acetyltransferase 2-like NW_004955403 42305517 42311914 + 102017731 AGCD01002751;GBDJ01116357;XM_005373603 XP_005373660 MODEL 8845227 protein-coding Trip11 thyroid hormone receptor interactor 11 INVOLVED IN bone development (ortholog); cartilage development (ortholog); chondrocyte differentiation involved in endochondral bone morphogenesis (ortholog); ASSOCIATED WITH achondrogenesis (ortholog); achondrogenesis type IA (ortholog); autism spectrum disorder (ortholog); FOUND IN acrosomal membrane (ortholog); cis-Golgi network (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955438 14327400 14394022 - 102022016 AGCD01035343;AGCD01035344;AGCD01035345;GBDK01231119;XM_013517219 XP_013372673 MODEL 9004087 pseudo LOC102019299 ferritin heavy chain pseudogene NW_004955506 5978894 5981769 + 102019299 AGCD01065396 MODEL 8956055 protein-coding Snx4 sorting nexin 4 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); insulin receptor binding (ortholog); leptin receptor binding (ortholog); INVOLVED IN endocytic recycling (ortholog); positive regulation of autophagosome assembly (ortholog); positive regulation of histamine secretion by mast cell (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic dynein complex (ortholog); early endosome (ortholog) NW_004955427 24520125 24579589 - 102022835 AGCD01027512;AGCD01027513;GBDF01152970;XM_005386551 XP_005386608 MODEL 39131918 snorna SNORA70 Small nucleolar RNA SNORA70 8822491 ncrna LOC102008554 uncharacterized LOC102008554 NW_004955425 10486431 10493561 + 102008554 AGCD01025446;GBDF01209722;XR_261137 MODEL 8715835 protein-coding LOC102029043 apolipoprotein R-like NW_004955406 42682040 42688031 + 102029043 AGCD01006714;GBDJ01064610;XM_005375425 XP_005375482 MODEL 8821926 protein-coding Slc19a2 solute carrier family 19 member 2 ENCODES a protein that exhibits thiamine transmembrane transporter activity (ortholog); INVOLVED IN pyridoxine transport (ortholog); spermatogenesis (ortholog); thiamine diphosphate biosynthetic process (ortholog); PARTICIPATES IN thiamine metabolic pathway; ASSOCIATED WITH chronic kidney disease (ortholog); Deafness (ortholog); diabetes mellitus (ortholog); FOUND IN plasma membrane (ortholog) NW_004955462 7786920 7804828 + 102012933 AGCD01049309;GBDF01308169;XM_005398189 XP_005398246 MODEL 8711058 ncrna LOC102007057 uncharacterized LOC102007057 NW_004955439 18083547 18090067 + 102007057 AGCD01036049;GBDK01269094;XR_001235223;XR_001235224 MODEL 8860097 ncrna LOC102009682 uncharacterized LOC102009682 NW_004955453 7009688 7017214 + 102009682 AGCD01044736;XR_001236192 MODEL 8808376 ncrna LOC102018876 uncharacterized LOC102018876 NW_004955451 369727 371246 - 102018876 AGCD01042932;GBDF01306894;XR_262565 MODEL 10147449 ncrna LOC106148222 uncharacterized LOC106148222 NW_004955417 31552672 31556241 - 106148222 AGCD01018655;GBDK01247327;XR_001233473 MODEL 8941876 protein-coding Prrt4 proline rich transmembrane protein 4 ASSOCIATED WITH COVID-19 (ortholog) NW_004955479 9355216 9364982 - 102022918 AGCD01056461;AGCD01056462;GBDI01309642;XM_013503258 XP_013358712 MODEL 39133240 snrna U4 U4 spliceosomal RNA 8773479 ncrna LOC102011636 uncharacterized LOC102011636 NW_004955412 12761973 12776122 - 102011636 AGCD01012825;GBDF01277129;XR_001232873 MODEL 8951452 protein-coding Plekhf1 pleckstrin homology and FYVE domain containing 1 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog); INVOLVED IN endosome organization (ortholog); positive regulation of autophagy (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN endosome (ortholog); lysosome (ortholog) NW_004955468 7934024 7943499 - 102012182 AGCD01052017;GBBH01126266;XM_005400111 XP_005400168 MODEL 10379278 ncrna LOC106149965 uncharacterized LOC106149965 NW_004955458 9802872 9807999 + 106149965 AGCD01047662;GBCE01168777;XR_001236458;XR_001236459 MODEL 8908462 protein-coding Pdpn podoplanin ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); chemokine binding (ortholog); folic acid transmembrane transporter activity (ortholog); INVOLVED IN actin-mediated cell contraction (ortholog); amino acid transport (ortholog); cell adhesion (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Albuminuria (ortholog); bacterial pneumonia (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cell junction (ortholog) NW_004955527 4183639 4215200 - 102018128 AGCD01069499;AGCD01069500;GBCE01052774;XM_005409891 XP_005409948 MODEL 8762189 protein-coding LOC102012824 cytochrome c oxidase subunit 6B1-like NW_004955452 216986 217314 - 102012824 AGCD01043804;XM_005394661 XP_005394718 MODEL 8904312 pseudo LOC102027323 solute carrier family 25 member 51-like NW_004955427 20636430 20637377 + 102027323 AGCD01027411 MODEL 9004566 protein-coding Tigit T cell immunoreceptor with Ig and ITIM domains ENCODES a protein that exhibits identical protein binding (ortholog); signaling receptor activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN negative regulation of interleukin-12 production (ortholog); negative regulation of natural killer cell mediated cytotoxicity (ortholog); negative regulation of T cell activation (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955427 14358326 14381074 + 102009969 AGCD01027271;GBBH01008722;XM_005386413 XP_005386470 MODEL 8897077 protein-coding LOC102006694 olfactory receptor 13A1-like NW_004955507 6424542 6432509 + 102006694 AGCD01065716;XM_005407723 XP_005407780 MODEL 8732629 pseudo LOC102028016 dynactin subunit 5-like NW_004955438 14972451 14979868 - 102028016 AGCD01035356 MODEL 8848356 protein-coding Secisbp2 SECIS binding protein 2 ENCODES a protein that exhibits DNA binding (ortholog); mRNA 3'-UTR binding (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN mRNA stabilization (ortholog); negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); neuron development (ortholog); ASSOCIATED WITH Abnormal Thyroid Hormone Metabolism 1 (ortholog); amino acid metabolic disorder (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog); ribonucleoprotein complex (ortholog) NW_004955515 2697370 2729425 - 102017046 AGCD01067259;AGCD01067260;GBDF01079974;XM_005408879;XM_013506887;XM_013506888 XP_005408936;XP_013362341;XP_013362342 MODEL 8771992 protein-coding Tpm4 tropomyosin 4 ENCODES a protein that exhibits actin filament binding (ortholog); identical protein binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN platelet formation (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); asbestosis (ortholog); Esophageal Neoplasms (ortholog); FOUND IN actin cytoskeleton (ortholog); cortical cytoskeleton (ortholog); cytoplasm (ortholog) NW_004955524 1419061 1432114 - 102022847 AGCD01068749;GBCC01000148;GBCQ01010124;XM_013507272 XP_013362726 MODEL 8865300 protein-coding Pcdh18 protocadherin 18 INVOLVED IN brain development (ortholog) NW_004955428 5846697 5859028 + 102025382 AGCD01027719;GBCE01170693;XM_005386711;XM_005386712;XM_013515332;XM_013515333 XP_005386768;XP_005386769;XP_013370786;XP_013370787 MODEL 8745488 protein-coding Rfx6 regulatory factor X6 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); transcription cis-regulatory region binding (ortholog); INVOLVED IN endocrine pancreas development (ortholog); glucose homeostasis (ortholog); pancreatic A cell differentiation (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog) NW_004955436 213810 278699 + 102007270 AGCD01033537;AGCD01033538;AGCD01033539;GBDF01078446;XM_005389119 XP_005389176 MODEL 8903132 protein-coding LOC102021800 disintegrin and metalloproteinase domain-containing protein 18-like NW_004955536 3675217 3758163 + 102021800 AGCD01070831;AGCD01070832;AGCD01070833;AGCD01070834;GBDF01001976;XM_005410550;XM_013507715;XM_013507716 XP_005410607;XP_013363169;XP_013363170 MODEL 8977712 protein-coding Smim29 small integral membrane protein 29 NW_004955437 2486918 2489003 - 102015344 AGCD01034271;GBDJ01187266;XM_005389519;XM_013517077;XM_013517078;XM_013517079;XM_013517080;XM_013517081;XM_013517082;XM_013517083 XP_005389576;XP_013372531;XP_013372532;XP_013372533;XP_013372534;XP_013372535;XP_013372536;XP_013372537 MODEL 8881412 protein-coding Lipc lipase C, hepatic type ENCODES a protein that exhibits acetylesterase activity (ortholog); acyltransferase activity (ortholog); apolipoprotein binding (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to hormone stimulus (ortholog); cholesterol homeostasis (ortholog); PARTICIPATES IN D-glycericacidemia pathway; familial lipoprotein lipase deficiency pathway; glycerol kinase deficiency pathway; ASSOCIATED WITH Albuminuria (ortholog); Alzheimer's disease (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cell surface (ortholog); early endosome (ortholog); extracellular region (ortholog) NW_004955450 15947869 16062449 - 102016439 AGCD01042826;AGCD01042827;AGCD01042828;AGCD01042829;GBCE01092534;XM_005393838;XM_005393839;XM_005393840 XP_005393895;XP_005393896;XP_005393897 MODEL 8872948 protein-coding S100a1 S100 calcium binding protein A1 ENCODES a protein that exhibits ATPase binding (ortholog); calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN ATP metabolic process (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of sprouting angiogenesis (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); intracranial vasospasm (ortholog); Myocardial Ischemia (ortholog); FOUND IN A band (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955545 276868 281015 + 102016098 AGCD01071781;GBDI01063284;XM_005411426 XP_005411483 MODEL 8967674 protein-coding Rbm3 RNA binding motif protein 3 ENCODES a protein that exhibits ribosomal large subunit binding (ortholog); INVOLVED IN miRNA processing (ortholog); positive regulation of translation (ortholog); regulation of translation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); large ribosomal subunit (ortholog) NW_004955543 166891 173987 + 102020843 AGCD01071562;GBDI01000015;XM_005411265;XM_005411266;XM_005411267 XP_005411322;XP_005411323;XP_005411324 MODEL 8945095 protein-coding Ppm1d protein phosphatase, Mg2+/Mn2+ dependent 1D ENCODES a protein that exhibits mitogen-activated protein kinase binding (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN cellular response to starvation (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); DNA methylation-dependent constitutive heterochromatin formation (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; p38 MAPK signaling pathway; p53 signaling pathway; ASSOCIATED WITH Brain Stem Neoplasms (ortholog); breast cancer (ortholog); Breast Cancer, Familial (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955451 1878110 1915794 + 102008169 AGCD01042992;AGCD01042993;AGCD01042994;AGCD01042995;AGCD01042996;AGCD01042997;AGCD01042998;GBDF01009582;GBDF01009585;XM_005393964 XP_005394021 MODEL 9012504 pseudo LOC102011641 uracil-DNA glycosylase pseudogene NW_004955413 26353261 26357509 - 102011641 AGCD01014435;XM_005379326;XM_005379327 MODEL 8848310 protein-coding LOC102015848 thioredoxin domain-containing protein 8 NW_004955419 16801943 16838029 + 102015848 AGCD01020125;AGCD01020126;GBDF01087312;XM_005382742;XM_005382743;XM_005382745;XM_013513287;XR_260636;XR_260637 XP_005382799;XP_005382800;XP_005382802;XP_013368741 MODEL 8855759 pseudo LOC102026337 protein FAM114A2 pseudogene NW_004955496 8153055 8154533 - 102026337 AGCD01062390 MODEL 8868094 protein-coding Sf3a1 splicing factor 3a subunit 1 ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN mRNA processing (ortholog); mRNA splicing, via spliceosome (ortholog); U2-type prespliceosome assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH diffuse large B-cell lymphoma (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955455 4579153 4601942 - 102020308 AGCD01045681;GBBH01034806;XM_005396258 XP_005396315 MODEL 8951590 protein-coding LOC102017735 cytochrome c, somatic-like NW_004955404 12414422 12414848 + 102017735 AGCD01003461;XM_005374082 XP_005374139 MODEL 8769524 pseudo LOC102005595 26S proteasome non-ATPase regulatory subunit 8 pseudogene NW_004955419 11675117 11798906 - 102005595 AGCD01019960;AGCD01019961 MODEL 9051698 protein-coding LOC102030459 uncharacterized LOC102030459 NW_004955513 5081091 5086200 + 102030459 AGCD01066954;GBDF01277750;XM_005408575 XP_005408632 MODEL 9066864 protein-coding LOC102003827 beta-defensin 130-like NW_004955403 53263393 53266892 - 102003827 AGCD01003047;GBDF01142643;XM_005373831 XP_005373888 MODEL 8734707 protein-coding Ptges prostaglandin E synthase ENCODES a protein that exhibits glutathione binding (ortholog); glutathione peroxidase activity (ortholog); glutathione transferase activity (ortholog); INVOLVED IN cellular response to resveratrol (ortholog); chronic inflammatory response (ortholog); cyclooxygenase pathway (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Barrett's esophagus (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955445 10053745 10056981 + 102028350 AGCD01039640;XM_005392576 XP_005392633 MODEL 8895433 protein-coding LOC102010836 protein S100-A6-like NW_004955545 93760 170651 - 102010836 AGCD01071765;AGCD01071766;AGCD01071767;AGCD01071768;AGCD01071769;AGCD01071770;AGCD01071771;AGCD01071772;AGCD01071773;AGCD01071774;GBDJ01329857;XM_005411405;XR_001232180 XP_005411462 MODEL 9003566 pseudo LOC102028026 40S ribosomal protein S27-like NW_004955442 12994636 12997882 + 102028026 AGCD01037753 MODEL 8700541 protein-coding Prickle3 prickle planar cell polarity protein 3 ASSOCIATED WITH Leber hereditary optic neuropathy (ortholog); Leber Optic Atrophy, Susceptibility To (ortholog); Leber plus disease (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog) NW_004955543 662438 673386 - 102010947 AGCD01071598;GBBH01101699;XM_005411332 XP_005411389 MODEL 8742549 protein-coding Wdr48 WD repeat domain 48 ENCODES a protein that exhibits deubiquitinase activator activity (ortholog); DNA binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN DNA damage response (ortholog); double-strand break repair via homologous recombination (ortholog); embryonic organ development (ortholog); ASSOCIATED WITH cognitive disorder (ortholog); hereditary spastic paraplegia (ortholog); FOUND IN cytoplasm (ortholog); late endosome (ortholog); lysosome (ortholog) NW_004955427 24873616 24917691 - 102026998 AGCD01027525;GBDF01050505;XM_005386566;XM_005386567;XM_013515075 XP_005386623;XP_005386624;XP_013370529 MODEL 8700751 ncrna LOC102023532 uncharacterized LOC102023532 NW_004955442 14977428 14983811 - 102023532 AGCD01037853;GBDI01024349;XR_262149 MODEL 8827526 protein-coding Enosf1 enolase superfamily member 1 ENCODES a protein that exhibits L-fuconate dehydratase activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN carbohydrate catabolic process (ortholog); ASSOCIATED WITH Drug-Related Side Effects and Adverse Reactions (ortholog); FOUND IN mitochondrion (ortholog) NW_004955402 9266198 9297897 + 102023212 AGCD01000211;AGCD01000212;GBBH01158568;XM_005372673;XM_013519244;XM_013519282;XM_013519332;XM_013519378;XM_013519436;XM_013519451;XM_013519472;XM_013519499;XM_013519540 XP_005372730;XP_013374698;XP_013374736;XP_013374786;XP_013374832;XP_013374890;XP_013374905;XP_013374926;XP_013374953;XP_013374994 MODEL 10362257 ncrna LOC106147127 uncharacterized LOC106147127 NW_004955521 3261506 3302262 - 106147127 AGCD01068228;AGCD01068229;XR_001231885 MODEL 8821152 pseudo LOC102010443 calnexin pseudogene NW_004955405 3150890 3152245 - 102010443 AGCD01004631 MODEL 8949666 protein-coding Qsox1 quiescin sulfhydryl oxidase 1 ENCODES a protein that exhibits FAD binding (ortholog); flavin-dependent sulfhydryl oxidase activity (ortholog); protein disulfide isomerase activity (ortholog); INVOLVED IN extracellular matrix assembly (ortholog); negative regulation of macroautophagy (ortholog); ASSOCIATED WITH substance-related disorder (ortholog); VACTERL association (ortholog); FOUND IN extracellular exosome (ortholog); extracellular region (ortholog); Golgi apparatus (ortholog) NW_004955406 19363938 19402134 + 102023111 AGCD01006078;AGCD01006079;AGCD01006080;AGCD01006081;AGCD01006082;GBDF01002852;GBDI01262267;XM_005375463;XM_013521310 XP_005375520;XP_013376764 MODEL 10325213 ncrna LOC106149966 uncharacterized LOC106149966 NW_004955458 9762195 9774375 + 106149966 AGCD01047662;XR_001236460 MODEL 8878450 ncrna LOC102028675 uncharacterized LOC102028675 NW_004955436 5519886 5521032 - 102028675 AGCD01033679;GBDF01088989;XR_001234996 MODEL 8738003 ncrna LOC102008558 uncharacterized LOC102008558 NW_004955430 15103778 15104993 + 102008558 AGCD01029588;GBDF01089462;XR_261428 MODEL 8766720 protein-coding Trip12 thyroid hormone receptor interactor 12 ENCODES a protein that exhibits nuclear thyroid hormone receptor binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN DNA repair-dependent chromatin remodeling (ortholog); heterochromatin boundary formation (ortholog); protein polyubiquitination (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH Clark-Baraitser syndrome (ortholog); Developmental Disease (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955453 5132776 5272250 + 102029932 AGCD01044705;AGCD01044706;GBDF01007218;XM_005395422;XM_005395424;XM_005395425;XM_005395426;XM_005395427;XM_005395428;XM_005395429;XM_005395430;XM_013519820;XM_013519821;XM_013519822 XP_005395479;XP_005395481;XP_005395482;XP_005395483;XP_005395484;XP_005395485;XP_005395486;XP_005395487;XP_013375274;XP_013375275;XP_013375276 MODEL 8764888 protein-coding LOC102006696 olfactory receptor 1038-like NW_004955511 1584309 1585274 + 102006696 AGCD01066372;XM_005407966 XP_005408023 MODEL 9026388 protein-coding Rmc1 regulator of MON1-CCZ1 INVOLVED IN regulation of autophagy (ortholog); FOUND IN late endosome (ortholog); late endosome membrane (ortholog); Mon1-Ccz1 complex (ortholog) NW_004955402 11676883 11699715 + 102006514 AGCD01000305;GBDF01051835;XM_005372708 XP_005372765 MODEL 8844207 protein-coding Rala RAS like proto-oncogene A ENCODES a protein that exhibits ATPase binding (ortholog); Edg-2 lysophosphatidic acid receptor binding (ortholog); GDP binding (ortholog); INVOLVED IN membrane raft localization (ortholog); neural tube closure (ortholog); positive regulation of epidermal growth factor receptor signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); HIATT-NEU-COOPER NEURODEVELOPMENTAL SYNDROME (ortholog); intellectual disability (ortholog); FOUND IN cell surface (ortholog); cleavage furrow (ortholog); endocytic vesicle (ortholog) NW_004955460 3789136 3853315 - 102018164 AGCD01048422;GBDF01124362;XM_005397729;XM_005397730;XR_263026 XP_005397786;XP_005397787 MODEL 8873850 protein-coding Rbm33 RNA binding motif protein 33 ENCODES a protein that exhibits lncRNA binding (ortholog); N6-methyladenosine-containing RNA reader activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN regulation of mRNA stability (ortholog); RNA export from nucleus (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955491 8534093 8633838 + 102018611 AGCD01060617;AGCD01060618;AGCD01060619;GBDF01052102;XM_005404864;XM_005404865;XM_005404866;XM_005404868;XM_013504634 XP_005404921;XP_005404922;XP_005404923;XP_005404925;XP_013360088 MODEL 8999657 ncrna LOC102017737 uncharacterized LOC102017737 NW_004955404 29784924 29788045 + 102017737 AGCD01003985;GBDJ01123967;XR_259327 MODEL 8993297 protein-coding LOC102007058 keratin, type II cuticular Hb5 NW_004955547 2711781 2718828 - 102007058 AGCD01072294;GBCB01095717;XM_005411935 XP_005411992 MODEL 8803863 pseudo LOC102025976 zinc finger CCHC-type and RNA-binding motif-containing protein 1 pseudogene NW_004955406 34227276 34229189 - 102025976 AGCD01006498 MODEL 8843475 ncrna LOC102024534 uncharacterized LOC102024534 NW_004955458 13179440 13185896 + 102024534 AGCD01047796;GBDF01253149;XR_262996 MODEL 8723945 protein-coding Prrx1 paired related homeobox 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN artery morphogenesis (ortholog); cartilage development (ortholog); embryonic cranial skeleton morphogenesis (ortholog); ASSOCIATED WITH agnathia-otocephaly complex (ortholog); atrial fibrillation (ortholog); Craniosynostosis Syndrome, Autosomal Recessive (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955462 6919905 6991733 + 102006989 AGCD01049292;AGCD01049293;GBCE01001518;XM_005398172;XM_005398173 XP_005398229;XP_005398230 MODEL 8833270 protein-coding LOC102021806 kallikrein-13 NW_004955558 1399746 1434873 + 102021806 AGCD01073442;AGCD01073443;AGCD01073444;GBCQ01148135;XM_005412713;XM_005412715;XM_013508921;XM_013508922;XM_013508923 XP_005412770;XP_005412772;XP_013364375;XP_013364376;XP_013364377 MODEL 8965077 protein-coding Plekhf2 pleckstrin homology and FYVE domain containing 2 FOUND IN early endosome membrane (ortholog); endoplasmic reticulum (ortholog); transport vesicle (ortholog) NW_004955417 11261712 11282038 + 102003868 AGCD01018128;AGCD01018129;GBDF01183993;XM_005381827 XP_005381884 MODEL 8958203 protein-coding Lipe lipase E, hormone sensitive type ENCODES a protein that exhibits all-trans-retinyl-palmitate hydrolase, all-trans-retinol forming activity (ortholog); diacylglycerol lipase activity (ortholog); hydrolase activity, acting on ester bonds (ortholog); INVOLVED IN cellular response to cold (ortholog); diacylglycerol catabolic process (ortholog); ether lipid metabolic process (ortholog); ASSOCIATED WITH arteriosclerosis (ortholog); familial partial lipodystrophy (ortholog); familial partial lipodystrophy type 6 (ortholog); FOUND IN cytosol (ortholog); extracellular region (ortholog); lipid droplet (ortholog) NW_004955555 511085 531165 + 102019855 AGCD01073035;GBDF01048257;XM_005412353;XM_013508677;XM_013508678;XM_013508679 XP_005412410;XP_013364131;XP_013364132;XP_013364133 MODEL 9028853 protein-coding S100a10 S100 calcium binding protein A10 ENCODES a protein that exhibits lipid binding (ortholog); protein homodimerization activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN membrane raft assembly (ortholog); mRNA transcription by RNA polymerase II (ortholog); positive regulation of focal adhesion assembly (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Animal Disease Models (ortholog); depressive disorder (ortholog); FOUND IN AnxA2-p11 complex (ortholog); cell surface (ortholog); membrane raft (ortholog) NW_004955589 435798 446361 + 102010849 AGCD01076171;GBCQ01009914;XM_005414536 XP_005414593 MODEL 9042916 protein-coding Slc6a18 solute carrier family 6 member 18 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); neutral L-amino acid transmembrane transporter activity (ortholog); neutral L-amino acid:sodium:chloride symporter activity (ortholog); INVOLVED IN amino acid transmembrane transport (ortholog); amino acid transport (ortholog); hyperosmotic response (ortholog); ASSOCIATED WITH hypertension (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); plasma membrane (ortholog) NW_004955504 634615 644667 + 102004836 AGCD01064824;GBCQ01008396;XM_005407047;XM_013505899;XM_013505900;XM_013505901;XM_013505902;XM_013505903;XM_013505904;XM_013505905;XM_013505907 XP_005407104;XP_013361353;XP_013361354;XP_013361355;XP_013361356;XP_013361357;XP_013361358;XP_013361359;XP_013361361 MODEL 8941599 protein-coding Snx5 sorting nexin 5 ENCODES a protein that exhibits D1 dopamine receptor binding (ortholog); dynactin binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN endosome membrane tubulation (ortholog); epidermal growth factor catabolic process (ortholog); negative regulation of blood pressure (ortholog); PARTICIPATES IN retromer-mediated pathway; ASSOCIATED WITH Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN brush border (ortholog); cytoplasmic side of early endosome membrane (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955415 26786836 26805762 - 102012316 AGCD01016607;AGCD01016608;GBCB01019926;GBDK01008760;XM_005380914 XP_005380971 MODEL 8901625 protein-coding Pdpr pyruvate dehydrogenase phosphatase regulatory subunit INVOLVED IN positive regulation of pyruvate decarboxylation to acetyl-CoA (ortholog); ASSOCIATED WITH Joubert syndrome (ortholog); FOUND IN mitochondrion (ortholog) NW_004955484 3007435 3044060 - 102027190 AGCD01058149;AGCD01058150;GBCQ01177188;GBDJ01186948;XM_005403465 XP_005403522 MODEL 8787657 protein-coding Timcc TIM double twin CX3C motif chaperone ASSOCIATED WITH Meniere's disease (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955424 14837264 14841354 + 102005819 AGCD01024660;GBBH01228913;XM_005385615 XP_005385672 MODEL 8886874 pseudo LOC102027325 synaptonemal complex protein 3 pseudogene NW_004955512 2187979 2189196 + 102027325 AGCD01066668 MODEL 8996451 ncrna LOC102012834 uncharacterized LOC102012834 NW_004955409 11180475 11194137 + 102012834 AGCD01009500;AGCD01009501;GBBH01138314;XR_001232647;XR_001232648 MODEL 9043415 protein-coding LOC102023534 putative P2Y purinoceptor 10 NW_004955557 1986541 2035879 + 102023534 AGCD01073319;AGCD01073320;AGCD01073321;GBCE01162977;XM_005412638;XM_005412639;XM_005412640;XM_013508834;XM_013508835;XM_013508836;XM_013508837 XP_005412695;XP_005412696;XP_005412697;XP_013364288;XP_013364289;XP_013364290;XP_013364291 MODEL 9021421 protein-coding Ppm1e protein phosphatase, Mg2+/Mn2+ dependent 1E ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to xenobiotic stimulus (ortholog); negative regulation of protein kinase activity (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; calcium/calmodulin dependent kinase 2 signaling pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955451 3989575 4137400 - 102018877 AGCD01043087;AGCD01043088;AGCD01043089;AGCD01043090;AGCD01043091;AGCD01043092;GBDF01190593;XM_005393998 XP_005394055 MODEL 8948074 ncrna LOC102010445 uncharacterized LOC102010445 NW_004955406 13995073 13998877 - 102010445 AGCD01005956;GBDJ01024864;XR_001236437 MODEL 8798281 protein-coding Slc19a3 solute carrier family 19 member 3 ENCODES a protein that exhibits thiamine transmembrane transporter activity (ortholog); INVOLVED IN pyridoxine transport (ortholog); thiamine diphosphate biosynthetic process (ortholog); thiamine transmembrane transport (ortholog); ASSOCIATED WITH basal ganglia disease (ortholog); biotin-responsive basal ganglia disease (ortholog); chronic kidney disease (ortholog); FOUND IN plasma membrane (ortholog) NW_004955453 6935372 6957808 + 102007731 AGCD01044734;GBDF01196023;XM_005395442;XM_013519971;XM_013519972;XM_013519973;XM_013519974;XM_013519975;XM_013519976;XM_013519977;XM_013519978 XP_005395499;XP_013375425;XP_013375426;XP_013375427;XP_013375428;XP_013375429;XP_013375430;XP_013375431;XP_013375432 MODEL 8915463 pseudo LOC102011206 isochorismatase domain-containing protein 1 pseudogene NW_004955485 129742 131023 + 102011206 AGCD01058442;XM_005403914 MODEL 10317808 ncrna LOC106148223 uncharacterized LOC106148223 NW_004955417 22552886 22554889 - 106148223 AGCD01018420;GBBH01217721;XR_001233474 MODEL 8707197 protein-coding LOC102008559 olfactory receptor 1440-like NW_004955511 3846306 3866765 - 102008559 AGCD01066478;AGCD01066479;XM_013506388 XP_013361842 MODEL 8775355 protein-coding Pcdh19 protocadherin 19 ASSOCIATED WITH autism spectrum disorder (ortholog); benign epilepsy with centrotemporal spikes (ortholog); developmental and epileptic encephalopathy 1 (ortholog) NW_004955503 6428894 6567253 - 102019412 AGCD01064758;AGCD01064759;AGCD01064760;AGCD01064761;GBDF01056580;XM_005406928;XM_005406929;XM_005406930;XM_013505862 XP_005406985;XP_005406986;XP_005406987;XP_013361316 MODEL 39133243 snrna U4 U4 spliceosomal RNA 8940649 protein-coding Trip13 thyroid hormone receptor interactor 13 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN double-strand break repair (ortholog); female meiosis I (ortholog); male meiosis I (ortholog); ASSOCIATED WITH Aneuploidy (ortholog); COVID-19 (ortholog); Germ Cell and Embryonal Neoplasms (ortholog); FOUND IN male germ cell nucleus (ortholog) NW_004955504 434187 452636 + 102029767 AGCD01064819;GBDF01223456;XM_005407032 XP_005407089 MODEL 8734333 protein-coding Btg3 BTG anti-proliferation factor 3 INVOLVED IN negative regulation of mitotic cell cycle (ortholog); response to oxidative stress (ortholog); ASSOCIATED WITH cholestasis (ortholog); renal cell carcinoma (ortholog); systemic juvenile rheumatoid arthritis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955407 18927211 18939576 - 102012927 AGCD01007289;GBCE01095553;GBDF01047524;XM_013503870 XP_013359324 MODEL 9038288 ncrna LOC102010838 uncharacterized LOC102010838 NW_004955440 18922189 18925290 - 102010838 AGCD01036623;GBDF01266858;XR_262046 MODEL 8973419 protein-coding LOC102019301 membrane-spanning 4-domains subfamily A member 6D-like NW_004955511 4880379 4889743 - 102019301 AGCD01066538;GBCQ01057843;XM_005408078;XM_005408079 XP_005408135;XP_005408136 MODEL 39131919 snorna SNORA70 Small nucleolar RNA SNORA70 8725629 protein-coding Ptges2 prostaglandin E synthase 2 ENCODES a protein that exhibits 12-hydroxyheptadecatrienoic acid synthase activity (ortholog); DNA binding (ortholog); lyase activity (ortholog); INVOLVED IN cyclooxygenase pathway (ortholog); lipid metabolic process (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN prostaglandin biosynthetic pathway; type II interferon signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Carbon Tetrachloride Poisoning (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cytosol (ortholog); Golgi membrane (ortholog); mitochondrion (ortholog) NW_004955419 608313 612813 + 102017772 AGCD01019598;GBDF01127195;XM_005382381 XP_005382438 MODEL 9063794 protein-coding Wdr49 WD repeat domain 49 ASSOCIATED WITH prostate cancer (ortholog) NW_004955448 16701241 16840180 - 102011823 AGCD01041701;AGCD01041702;AGCD01041703;GBDK01313375;XM_013518658;XM_013518659;XM_013518660;XM_013518661;XM_013518662;XM_013518663 XP_013374112;XP_013374113;XP_013374114;XP_013374115;XP_013374116;XP_013374117 MODEL 8986127 pseudo LOC102011642 ras-related protein Rab-5A pseudogene NW_004955468 5230636 5231184 + 102011642 AGCD01051959 MODEL 8980489 protein-coding LOC102029044 putative tripartite motif-containing protein 64C NW_004955406 32868593 32878297 + 102029044 AGCD01006455;XM_013503240 XP_013358694 MODEL 8702502 ncrna LOC102015849 uncharacterized LOC102015849 NW_004955419 26437701 26446195 - 102015849 AGCD01020409;GBDF01144301;XR_260658 MODEL 8793979 pseudo LOC102009690 olfactory receptor 1361-like NW_004955408 1614860 1615787 + 102009690 AGCD01007967 MODEL 9065298 protein-coding Lipf lipase F, gastric type ENCODES a protein that exhibits malate dehydrogenase activity (ortholog); triacylglycerol lipase activity (ortholog); INVOLVED IN malate metabolic process (ortholog); FOUND IN extracellular region (ortholog); mitochondrion (ortholog) NW_004955425 4267977 4284996 - 102022515 AGCD01025310;GBBH01000444;XM_005385871;XM_005385872;XM_013514778 XP_005385928;XP_005385929;XP_013370232 MODEL 8978744 protein-coding Sf3a2 splicing factor 3a subunit 2 INVOLVED IN mRNA processing (ortholog); mRNA splicing, via spliceosome (ortholog); positive regulation of neuron projection development (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955495 5896648 5904287 - 102016929 AGCD01062043;GBDF01008843;XM_005405914;XM_005405915 XP_005405971;XP_005405972 MODEL 8773292 protein-coding LOC102018880 uncharacterized protein C1orf43 NW_004956345 1240 4569 - 102018880 AGCD01079460;GBDF01045162;GBDI01007030;XM_005415197 XP_005415254 MODEL 8753374 protein-coding Snx6 sorting nexin 6 ENCODES a protein that exhibits dynactin binding (ortholog); protein homodimerization activity (ortholog); type I transforming growth factor beta receptor binding (ortholog); INVOLVED IN cellular response to amyloid-beta (ortholog); cellular response to epidermal growth factor stimulus (ortholog); intracellular protein transport (ortholog); PARTICIPATES IN retromer-mediated pathway; FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); early endosome (ortholog) NW_004955409 26323940 26353675 + 102006748 AGCD01010173;AGCD01010174;AGCD01010175;AGCD01010176;GBCQ01034883;GBDK01020668;XM_005376940 XP_005376997 MODEL 8764139 pseudo LOC102030465 hsc70-interacting protein-like NW_004955519 3126194 3127251 + 102030465 AGCD01067949 MODEL 8750731 pseudo LOC102023536 speckle-type POZ protein pseudogene NW_004955560 68646 70938 + 102023536 AGCD01073706 MODEL 8720381 protein-coding LOC102006698 olfactory receptor 1020-like NW_004955511 682056 682990 + 102006698 AGCD01066337;XM_013506361 XP_013361815 MODEL 8994981 protein-coding Smim3 small integral membrane protein 3 ENCODES a protein that exhibits identical protein binding (ortholog) NW_004955415 3789462 3817117 - 102011760 AGCD01015952;AGCD01015953;GBCE01152699;XM_005380563;XM_013512224;XM_013512225;XM_013512226 XP_005380620;XP_013367678;XP_013367679;XP_013367680 MODEL 8934565 protein-coding Rmdn1 regulator of microtubule dynamics 1 ENCODES a protein that exhibits microtubule binding (ortholog); FOUND IN centrosome (ortholog); mitochondrion (ortholog); mitotic spindle pole (ortholog) NW_004955417 4067981 4092421 - 102006772 AGCD01017937;GBBH01050987;GBDK01316896;XM_005381750 XP_005381807 MODEL 8906494 protein-coding Ralb RAS like proto-oncogene B ENCODES a protein that exhibits ATPase binding (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN positive regulation of autophagosome assembly (ortholog); positive regulation of epidermal growth factor receptor signaling pathway (ortholog); positive regulation of innate immune response (ortholog); ASSOCIATED WITH pancreatic adenocarcinoma (ortholog); FOUND IN midbody (ortholog); plasma membrane (ortholog) NW_004955459 9533081 9574464 - 102016136 AGCD01048159;AGCD01048160;AGCD01048161;GBDI01080246;XM_005397650;XM_005397651 XP_005397707;XP_005397708 MODEL 8824113 pseudo LOC102011208 40S ribosomal protein S12 pseudogene NW_004955489 506441 506882 - 102011208 AGCD01059807 MODEL 10329813 ncrna LOC106147128 uncharacterized LOC106147128 NW_004955521 3747314 3771135 - 106147128 AGCD01068243;AGCD01068244;AGCD01068245;GBDI01145169;XR_001231886 MODEL 10304121 ncrna LOC106148224 uncharacterized LOC106148224 NW_004955418 21695615 21833629 - 106148224 AGCD01019273;AGCD01019274;AGCD01019275;XR_001233475;XR_001233476;XR_001233477;XR_001233478;XR_001233479;XR_001233480;XR_001233481 MODEL 8914467 protein-coding LOC102026338 allergen Bos d 2-like NW_004955499 3381170 3387765 + 102026338 AGCD01063463;GBDF01261117;XM_005406561 XP_005406618 MODEL 8983783 protein-coding Enox1 ecto-NOX disulfide-thiol exchanger 1 ENCODES a protein that exhibits NADH dehydrogenase activity (ortholog); protein disulfide isomerase activity (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN plasma membrane (ortholog) NW_004955518 1124556 1677025 - 102006270 AGCD01067756;AGCD01067757;AGCD01067758;AGCD01067759;AGCD01067760;AGCD01067761;AGCD01067762;GBDF01088322;XM_005409058;XM_005409064;XM_005409068;XM_005409071;XM_013506963;XM_013506964;XM_013506965;XM_013506966;XM_013506967 XP_005409115;XP_005409121;XP_005409125;XP_005409128;XP_013362417;XP_013362418;XP_013362419;XP_013362420;XP_013362421 MODEL 8805143 protein-coding Prickle4 prickle planar cell polarity protein 4 NW_004955437 8177451 8182992 + 102016092 AGCD01034480;GBDF01298022;XM_005389698;XM_005389699;XM_005389700;XM_013517057;XM_013517058;XM_013517059;XM_013517060;XM_013517061;XM_013517062;XM_013517063;XM_013517064;XM_013517065 XP_005389755;XP_005389756;XP_005389757;XP_013372511;XP_013372512;XP_013372513;XP_013372514;XP_013372515;XP_013372516;XP_013372517;XP_013372518;XP_013372519 MODEL 8734565 protein-coding Prss12 serine protease 12 ENCODES a protein that exhibits peptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN exocytosis (ortholog); proteolysis (ortholog); zymogen activation (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 1 (ortholog); intellectual disability (ortholog); long QT syndrome (ortholog); FOUND IN axon (ortholog); cytoplasmic vesicle (ortholog); dendrite (ortholog) NW_004955428 21574947 21644909 + 102023723 AGCD01028144;AGCD01028145;GBBH01208476;GBDF01194309;XM_013515266 XP_013370720 MODEL 9065200 protein-coding Timd4 T cell immunoglobulin and mucin domain containing 4 ENCODES a protein that exhibits phosphatidylserine binding (ortholog); INVOLVED IN apoptotic cell clearance (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); ovarian cyst (ortholog); FOUND IN plasma membrane (ortholog) NW_004955408 10969413 10998042 - 102019476 AGCD01008280;AGCD01008281;AGCD01008282;GBBH01126834;XM_013506889;XM_013506895;XM_013506900 XP_013362343;XP_013362349;XP_013362354 MODEL 8740323 pseudo LOC102005596 TCDD-inducible poly [ADP-ribose] polymerase pseudogene NW_004955483 1094919 1097507 - 102005596 AGCD01057640 MODEL 8886233 protein-coding Enox2 ecto-NOX disulfide-thiol exchanger 2 INVOLVED IN electron transport chain (ortholog); ultradian rhythm (ortholog); ASSOCIATED WITH disease of cellular proliferation (ortholog); malignant mesothelioma (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955473 4123403 4455268 + 102004379 AGCD01053946;AGCD01053947;AGCD01053948;AGCD01053949;AGCD01053950;AGCD01053951;GBCE01168964;XM_005401229;XM_005401230;XM_005401231;XM_013523085 XP_005401286;XP_005401287;XP_005401288;XP_013378539 MODEL 8762622 pseudo LOC102003830 lysophospholipid acyltransferase LPCAT4 pseudogene NW_004955404 19109521 19111476 - 102003830 AGCD01003637 MODEL 8895770 protein-coding Ppm1f protein phosphatase, Mg2+/Mn2+ dependent 1F ENCODES a protein that exhibits calmodulin-dependent protein phosphatase activity (ortholog); phosphoprotein phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN cellular response to xenobiotic stimulus (ortholog); intracellular signal transduction (ortholog); negative regulation of cell-cell adhesion mediated by cadherin (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; calcium/calmodulin dependent kinase 2 signaling pathway; FOUND IN cytosol (ortholog); perinuclear region of cytoplasm (ortholog); protein-containing complex (ortholog) NW_004955442 17233258 17256009 + 102016525 AGCD01037946;AGCD01037947;GBCB01067010;XM_013517654 XP_013373108 MODEL 9027538 protein-coding Rbm34 RNA binding motif protein 34 FOUND IN nucleolus (ortholog) NW_004955492 4732249 4754433 + 102023609 AGCD01060728;AGCD01060729;GBBH01193549;GBDK01239466;XM_005405017 XP_005405074 MODEL 8988757 protein-coding LOC102028027 serine/threonine-protein phosphatase 4 regulatory subunit 1-like NW_004955445 1226286 1308659 + 102028027 AGCD01039335;AGCD01039336;GBDF01127004;XM_005392243;XM_005392244;XM_005392245;XM_013518341;XM_013518342;XR_262291 XP_005392300;XP_005392301;XP_005392302;XP_013373795;XP_013373796 MODEL 8888967 protein-coding Lipg lipase G, endothelial type ENCODES a protein that exhibits glycerophospholipase activity (ortholog); glycerophospholipid phospholipase A1 activity (ortholog); triacylglycerol lipase activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); high-density lipoprotein particle remodeling (ortholog); phospholipid homeostasis (ortholog); ASSOCIATED WITH arteriosclerosis (ortholog); cardiovascular system disease (ortholog); cerebral infarction (ortholog); FOUND IN cell surface (ortholog); early endosome (ortholog); extracellular region (ortholog) NW_004955402 34666757 34689726 + 102013987 AGCD01000868;GBDJ01313997;XM_005372911 XP_005372968 MODEL 8866538 protein-coding Sf3a3 splicing factor 3a subunit 3 INVOLVED IN mRNA processing (ortholog); mRNA splicing, via spliceosome (ortholog); U2-type prespliceosome assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955452 15691729 15715782 - 102016339 AGCD01044494;AGCD01044495;GBCB01056221;XM_005395224 XP_005395281 MODEL 39133244 snrna U4 U4 spliceosomal RNA 10243333 ncrna LOC106149967 uncharacterized LOC106149967 NW_004955458 9925818 9930758 + 106149967 AGCD01047667;GBDF01005033;XR_001236461 MODEL 8809794 protein-coding Secisbp2l SECIS binding protein 2 like ASSOCIATED WITH Lung Neoplasms (ortholog) NW_004955409 4926330 4974889 + 102010034 AGCD01009302;AGCD01009303;GBBH01141525;GBDF01160475;XM_013510300 XP_013365754 MODEL 9057089 protein-coding Qsox2 quiescin sulfhydryl oxidase 2 INVOLVED IN female gonad development (ortholog); FOUND IN Golgi apparatus (ortholog); nucleoplasm (ortholog) NW_004955513 4438078 4463276 + 102013529 AGCD01066927;GBDK01241930;XM_005408519 XP_005408576 MODEL 8750369 protein-coding S100a11 S100 calcium binding protein A11 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); protein homodimerization activity (ortholog); S100 protein binding (ortholog); INVOLVED IN positive regulation of smooth muscle cell migration (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955589 405544 409936 + 102010111 AGCD01076171;GBDF01162287;XM_005414534;XM_005414535;XM_013509959;XM_013509960 XP_005414591;XP_005414592;XP_013365413;XP_013365414 MODEL 8745406 protein-coding Plekhg1 pleckstrin homology and RhoGEF domain containing G1 ASSOCIATED WITH nicotine dependence (ortholog); prostate cancer (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955439 10636444 10755814 - 102004645 AGCD01035887;GBCE01021171;XM_005390587;XM_013517387;XM_013517388 XP_005390644;XP_013372841;XP_013372842 MODEL 8920132 pseudo LOC102027330 GTP-binding protein RAD-like NW_004955433 23499916 23502410 - 102027330 AGCD01031971 MODEL 9007383 protein-coding LOC102021810 olfactory receptor 1052-like NW_004955568 988414 994736 - 102021810 AGCD01074533;AGCD01074534;XM_005413486 XP_005413543 MODEL 9031797 protein-coding Pdrg1 p53 and DNA damage regulated 1 ASSOCIATED WITH Liver Neoplasms (ortholog); FOUND IN RPAP3/R2TP/prefoldin-like complex (ortholog) NW_004955422 29052599 29059727 + 102012214 AGCD01023378;GBDF01085394;XM_005384881;XM_013514201 XP_005384938;XP_013369655 MODEL 8868081 protein-coding Tpmt thiopurine S-methyltransferase ENCODES a protein that exhibits S-adenosyl-L-methionine binding (ortholog); thiopurine S-methyltransferase activity (ortholog); INVOLVED IN response to testosterone (ortholog); xenobiotic metabolic process (ortholog); PARTICIPATES IN azathioprine pharmacodynamics pathway; mercaptopurine pharmacodynamics pathway; mercaptopurine pharmacokinetics pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); alopecia (ortholog); autism spectrum disorder (ortholog) NW_004955483 8052867 8072235 + 102019173 AGCD01057824;GBDK01177579;XM_005403393;XM_013503824;XM_013503825;XM_013503826 XP_005403450;XP_013359278;XP_013359279;XP_013359280 MODEL 9010434 pseudo LOC102012837 glycerophosphocholine phosphodiesterase GPCPD1 pseudogene NW_004955410 7980036 7985561 - 102012837 AGCD01010730 MODEL 8959807 protein-coding Rfx7 regulatory factor X7 ENCODES a protein that exhibits RNA polymerase II core promoter sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 71 with behavioral abnormalities (ortholog); Familial Prostate Cancer (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog) NW_004955409 59535 121157 + 102006985 AGCD01009138;GBDI01261564;XM_005376598;XM_005376600;XM_005376601 XP_005376655;XP_005376657;XP_005376658 MODEL 8751704 ncrna LOC102009699 uncharacterized LOC102009699 NW_004955463 10028163 10058844 + 102009699 AGCD01049805;GBDF01179188;XR_263167;XR_263168 MODEL 8845975 protein-coding Wdr5 WD repeat domain 5 ENCODES a protein that exhibits histone H3K4 methyltransferase activity (ortholog); histone H3K4me1 reader activity (ortholog); histone H3Q5ser reader activity (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); neuron projection development (ortholog); peptidyl-lysine methylation (ortholog); PARTICIPATES IN histone modification pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH congenital heart disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN ATAC complex (ortholog); histone acetyltransferase complex (ortholog); histone methyltransferase complex (ortholog) NW_004955513 3198655 3213754 + 102023728 AGCD01066899;GBDI01187396;XM_005408463;XM_013506677 XP_005408520;XP_013362131 MODEL 8791288 pseudo LOC102017738 40S ribosomal protein S18 pseudogene NW_004955405 17787001 17787460 + 102017738 AGCD01005008;XR_259386 MODEL 8848885 ncrna LOC102007060 uncharacterized LOC102007060 NW_004955554 703446 714957 + 102007060 AGCD01072953;GBDF01082739;XR_001232295;XR_264946 MODEL 8883750 pseudo LOC102008560 cell division control protein 42 homolog pseudogene NW_004955430 16590042 16591833 - 102008560 AGCD01029642 MODEL 8808532 protein-coding Pds5a PDS5 cohesin associated factor A INVOLVED IN anterior/posterior pattern specification (ortholog); heart morphogenesis (ortholog); lens development in camera-type eye (ortholog); ASSOCIATED WITH Cornelia de Lange syndrome (ortholog); Neurodevelopmental Disorders (ortholog); Prostatic Neoplasms (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955443 7475434 7603548 + 102022550 AGCD01038285;AGCD01038286;GBDF01192301;GBDF01192302;XM_005391971 XP_005392028 MODEL 9050042 pseudo LOC102024539 small acidic protein pseudogene NW_004955464 4195653 4196232 + 102024539 AGCD01049986 MODEL 8779950 protein-coding LOC102010839 cytochrome P450 2S1 ENCODES a protein that exhibits 12-hydroxyheptadecatrienoic acid synthase activity (ortholog); hydro-lyase activity (ortholog); monooxygenase activity (ortholog); INVOLVED IN icosanoid metabolic process (ortholog); prostaglandin metabolic process (ortholog); retinoic acid metabolic process (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); psoriasis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955555 167634 183572 + 102010839 AGCD01073024;GBDK01317297;XM_005412321 XP_005412378 MODEL 8728830 protein-coding Rmdn2 regulator of microtubule dynamics 2 ENCODES a protein that exhibits microtubule binding (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); mitotic spindle (ortholog) NW_004955441 5710487 5776351 + 102008032 AGCD01036882;AGCD01036883;AGCD01036884;AGCD01036885;AGCD01036886;GBBH01082805;XM_005390877;XM_005390880;XM_013517543;XM_013517544 XP_005390934;XP_005390937;XP_013372997;XP_013372998 MODEL 8958562 protein-coding Ptges3 prostaglandin E synthase 3 ENCODES a protein that exhibits DNA polymerase binding (ortholog); enzyme binding (ortholog); Hsp90 protein binding (ortholog); INVOLVED IN cell population proliferation (ortholog); chaperone-mediated protein complex assembly (ortholog); cyclooxygenase pathway (ortholog); PARTICIPATES IN aldosterone signaling pathway; cortisol signaling pathway; estrogen signaling pathway; ASSOCIATED WITH atherosclerosis (ortholog); autism spectrum disorder (ortholog); breast cancer (ortholog); FOUND IN actin filament (ortholog); cytosol (ortholog); neuronal cell body (ortholog) NW_004955458 4203075 4209967 - 102013802 AGCD01047385;GBDI01002083;GBDJ01074687;XM_005397329 XP_005397386 MODEL 9023208 pseudo LOC102028676 nuclease-sensitive element-binding protein 1 pseudogene NW_004955529 1991654 1992398 - 102028676 AGCD01069717 MODEL 9019350 protein-coding LOC102011211 cationic trypsin-3-like NW_004955494 1248108 1252850 + 102011211 AGCD01061393;XM_005405394 XP_005405451 MODEL 9059092 protein-coding Rbm38 RNA binding motif protein 38 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955445 2036314 2050882 - 102004430 AGCD01039348;GBBH01032146;GBDF01047365;XM_005392253 XP_005392310 MODEL 8806264 ncrna LOC102026342 uncharacterized LOC102026342 NW_004955511 5275166 5283457 - 102026342 AGCD01066553;GBDF01224841;XR_264430 MODEL 10143371 ncrna LOC106148225 uncharacterized LOC106148225 NW_004955418 20472077 20510262 - 106148225 AGCD01019227;AGCD01019228;AGCD01019229;GBBH01209931;XR_001233483 MODEL 8833726 ncrna LOC102010449 uncharacterized LOC102010449 NW_004955408 9399013 9409596 + 102010449 AGCD01008249;GBDF01235295;XR_259676 MODEL 8761390 protein-coding LOC102011647 olfactory receptor 52B2-like NW_004955414 21925278 21926526 - 102011647 AGCD01015437;XM_013511699 XP_013367153 MODEL 8714128 pseudo LOC102015852 small ubiquitin-related modifier 1 pseudogene NW_004955486 515925 528616 + 102015852 AGCD01058860;XM_005404296 MODEL 8892558 protein-coding Slc1a1 solute carrier family 1 member 1 ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); D-aspartate transmembrane transporter activity (ortholog); glutamate binding (ortholog); INVOLVED IN activation of protein kinase B activity (ortholog); adult behavior (ortholog); behavioral fear response (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH Atrophy (ortholog); autism spectrum disorder (ortholog); brain disease (ortholog); FOUND IN apical dendrite (ortholog); apical part of cell (ortholog); apical plasma membrane (ortholog) NW_004955434 8790685 8879757 + 102024270 AGCD01032276;AGCD01032277;AGCD01032278;GBCE01069636;XM_005388636 XP_005388693 MODEL 9043631 protein-coding Prss16 serine protease 16 FOUND IN endosome (ortholog); lysosome (ortholog) NW_004955465 13152701 13158411 + 102003636 AGCD01050590;AGCD01050591;GBDI01355224;XM_013521807 XP_013377261 MODEL 8931908 pseudo LOC102006699 acyl-protein thioesterase 1 pseudogene NW_004955430 12369664 12370317 + 102006699 AGCD01029499 MODEL 8872670 protein-coding LOC102030469 vomeronasal type-2 receptor 116-like NW_004955524 1544303 1564072 - 102030469 AGCD01068755;AGCD01068756;XM_013507190 XP_013362644 MODEL 8706800 protein-coding LOC102018881 keratin, type I cytoskeletal 28 NW_004955451 15254864 15264012 - 102018881 AGCD01043603;AGCD01043604;GBDK01170754;XM_005394373 XP_005394430 MODEL 8987314 protein-coding Enpep glutamyl aminopeptidase ENCODES a protein that exhibits aminopeptidase activity (ortholog); glutamyl aminopeptidase activity (ortholog); metalloaminopeptidase activity (ortholog); INVOLVED IN angiogenesis (ortholog); angiotensin maturation (ortholog); cell migration (ortholog); PARTICIPATES IN angiotensin III signaling pathway; renin-angiotensin cascade pathway; ASSOCIATED WITH autistic disorder (ortholog); Diabetic Nephropathies (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); brush border (ortholog) NW_004955457 15863881 15943074 - 102023230 AGCD01047099;AGCD01047100;GBCQ01011653;XM_005397109 XP_005397166 MODEL 8949224 protein-coding Pcdh20 protocadherin 20 NW_004955404 43615300 43623119 + 102003406 AGCD01004390;GBDF01032942;XM_005374200;XR_259336;XR_259337 XP_005374257 MODEL 8999716 protein-coding LOC102019302 olfactory receptor 8K5-like NW_004955511 1415677 1416615 + 102019302 AGCD01066366;XM_005408231 XP_005408288 MODEL 8912484 protein-coding Ppm1g protein phosphatase, Mg2+/Mn2+ dependent 1G ENCODES a protein that exhibits phosphoprotein phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN peptidyl-threonine dephosphorylation (ortholog); protein dephosphorylation (ortholog); regulation of cell cycle (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955469 9344968 9350123 - 102004592 AGCD01052498;GBDJ01076537;GBDJ01076538;XM_005400501 XP_005400558 MODEL 9058373 protein-coding LOC102003832 UDP-glucuronosyltransferase 1-8-like NW_004955453 2647244 2648138 - 102003832 AGCD01044635;GBDJ01098935;XM_005395700 XP_005395757 MODEL 8846082 protein-coding LOC102028029 leukocyte immunoglobulin-like receptor subfamily A member 6 NW_004955567 1710318 1715025 + 102028029 AGCD01074488;XM_005413416 XP_005413473 MODEL 8803359 protein-coding Slc6a19 solute carrier family 6 member 19 ENCODES a protein that exhibits alanine:sodium symporter activity (ortholog); glycine:sodium symporter activity (ortholog); neutral L-amino acid transmembrane transporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); neutral amino acid transport (ortholog); response to nutrient (ortholog); ASSOCIATED WITH genetic disease (ortholog); Glycinuria with or without Oxalate Urolithiasis (ortholog); Hartnup disease (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); plasma membrane (ortholog) NW_004955504 617683 633594 + 102004299 AGCD01064824;GBCQ01005442;XM_005407040;XM_005407041 XP_005407097;XP_005407098 MODEL 8904230 protein-coding Ralbp1 ralA binding protein 1 ENCODES a protein that exhibits ABC-type glutathione S-conjugate transporter activity (ortholog); ABC-type xenobiotic transporter activity (ortholog); ATPase-coupled transmembrane transporter activity (ortholog); INVOLVED IN doxorubicin transport (ortholog); endocytosis (ortholog); negative regulation of smooth muscle cell proliferation (ortholog); PARTICIPATES IN doxorubicin pharmacokinetics pathway; vinblastine pharmacodynamics pathway; vincristine pharmacodynamics pathway; ASSOCIATED WITH hypertension (ortholog); microphthalmia (ortholog); Myocardial Ischemia (ortholog); FOUND IN membrane (ortholog); mitochondrion (ortholog); nuclear body (ortholog) NW_004955402 2571672 2616040 - 102023859 AGCD01000084;AGCD01000085;AGCD01000086;GBCB01039887;XM_005372598;XM_005372599;XM_005372600;XM_005372601 XP_005372655;XP_005372656;XP_005372657;XP_005372658 MODEL 8985510 protein-coding Wdr53 WD repeat domain 53 NW_004955420 12694208 12714613 - 102013299 AGCD01020884;AGCD01020885;GBDI01358032;XM_005383136;XM_005383137;XM_005383138;XM_013513504 XP_005383193;XP_005383194;XP_005383195;XP_013368958 MODEL 8869541 protein-coding Liph lipase H ENCODES a protein that exhibits glycerophospholipase activity (ortholog); heparin binding (ortholog); INVOLVED IN lipid catabolic process (ortholog); ASSOCIATED WITH familial woolly hair syndrome (ortholog); genetic disease (ortholog); hypotrichosis (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog) NW_004955420 22015254 22049508 + 102010908 AGCD01021178;AGCD01021179;AGCD01021180;GBBH01172461;XM_005383294 XP_005383351 MODEL 10131119 ncrna LOC106149969 uncharacterized LOC106149969 NW_004955458 3721704 3723206 - 106149969 AGCD01047340;GBDF01065268;XR_001236465 MODEL 8932948 protein-coding LOC102025978 sodium/glucose cotransporter 1-like NW_004955455 7427164 7489654 + 102025978 AGCD01045855;AGCD01045856;AGCD01045857;AGCD01045858;AGCD01045859;GBDF01052696;XM_005396369;XM_005396370 XP_005396426;XP_005396427 MODEL 8989445 protein-coding S100a13 S100 calcium binding protein A13 ENCODES a protein that exhibits calcium ion binding (ortholog); copper ion binding (ortholog); fibroblast growth factor binding (ortholog); INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of cell population proliferation (ortholog); positive regulation of cytokine production (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955545 266674 282408 - 102016637 AGCD01071781;GBDI01022123;XM_005411432;XM_005411433;XM_005411435;XM_013508324;XM_013508325;XM_013508326;XM_013508327;XM_013508328;XM_013508329;XM_013508330;XM_013508331 XP_005411489;XP_005411490;XP_005411492;XP_013363778;XP_013363779;XP_013363780;XP_013363781;XP_013363782;XP_013363783;XP_013363784;XP_013363785 MODEL 9066440 pseudo LOC102027335 calcium-independent phospholipase A2-gamma pseudogene NW_004955529 1054602 1078663 - 102027335 AGCD01069670;AGCD01069671;AGCD01069672;AGCD01069673 MODEL 9012823 protein-coding Plekhg2 pleckstrin homology and RhoGEF domain containing G2 INVOLVED IN regulation of actin filament polymerization (ortholog); ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); LEUKODYSTROPHY AND ACQUIRED MICROCEPHALY WITH OR WITHOUT DYSTONIA (ortholog); microcephaly (ortholog) NW_004955468 138262 149480 - 102022068 AGCD01051683;AGCD01051684;GBBH01065682;XM_013522376 XP_013377830 MODEL 8846363 protein-coding Timeless timeless circadian regulator ENCODES a protein that exhibits enzyme activator activity (ortholog); identical protein binding (ortholog); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); branching morphogenesis of an epithelial tube (ortholog); cell cycle phase transition (ortholog); ASSOCIATED WITH advanced sleep phase syndrome 4 (ortholog); alcohol use disorder (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); nucleoplasm (ortholog) NW_004955458 3999143 4029523 - 102009354 AGCD01047360;AGCD01047361;AGCD01047362;GBDF01162534;XM_005397313;XM_013521023 XP_005397370;XP_013376477 MODEL 39131920 snorna SNORA70 Small nucleolar RNA SNORA70 8779405 protein-coding Snx7 sorting nexin 7 INVOLVED IN positive regulation of autophagosome assembly (ortholog); protein transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN early endosome (ortholog); early endosome membrane (ortholog) NW_004955435 3481304 3543801 + 102020604 AGCD01032788;AGCD01032789;AGCD01032790;AGCD01032791;GBCB01111236;GBCE01074188;XM_013516541 XP_013371995 MODEL 8821393 protein-coding Trip4 thyroid hormone receptor interactor 4 ENCODES a protein that exhibits histone acetyltransferase binding (ortholog); nuclear estrogen receptor binding (ortholog); nuclear receptor binding (ortholog); INVOLVED IN estrogen receptor signaling pathway (ortholog); positive regulation of DNA-templated transcription (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH centronuclear myopathy (ortholog); Congenital Muscular Dystrophy, Davignon-Chauveau Type (ortholog); genetic disease (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); neuromuscular junction (ortholog) NW_004955450 11005842 11088192 - 102017084 AGCD01042643;AGCD01042644;AGCD01042645;AGCD01042646;AGCD01042647;GBDJ01063421;XM_005393753 XP_005393810 MODEL 39131372 protein-coding SMIM30 small integral membrane protein 30 8935685 protein-coding LOC102007062 S-phase kinase-associated protein 1-like NW_004955445 2496144 2496743 - 102007062 AGCD01039356;XM_005392261 XP_005392318 MODEL 10267281 ncrna LOC106147130 uncharacterized LOC106147130 NW_004955521 2558592 2564053 - 106147130 AGCD01068209;XR_001231887 MODEL 8903922 ncrna LOC102008561 uncharacterized LOC102008561 NW_004955432 20882075 20884968 - 102008561 AGCD01031209;AGCD01031210;XR_261538 MODEL 8740356 protein-coding LOC102010840 serine protease 29-like NW_004955442 15998729 16000624 + 102010840 AGCD01037890;GBBH01115240;XM_005391588 XP_005391645 MODEL 9033925 protein-coding Prim1 DNA primase subunit 1 ENCODES a protein that exhibits DNA-directed RNA polymerase activity (ortholog); magnesium ion binding (ortholog); ribonucleotide binding (ortholog); INVOLVED IN DNA replication initiation (ortholog); DNA replication, synthesis of primer (ortholog); ASSOCIATED WITH primary ovarian insufficiency (ortholog); PRIMORDIAL DWARFISM-IMMUNODEFICIENCY-LIPODYSTROPHY SYNDROME (ortholog); Seckel syndrome (ortholog); FOUND IN alpha DNA polymerase:primase complex (ortholog) NW_004955458 4265500 4294329 - 102014116 AGCD01047395;AGCD01047396;AGCD01047397;AGCD01047398;AGCD01047399;AGCD01047400;GBCB01132065;GBDI01357635;XM_013520988 XP_013376442 MODEL 8987617 protein-coding Seh1l SEH1 like nucleoporin INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); cellular response to amino acid starvation (ortholog); cellular response to nutrient levels (ortholog); PARTICIPATES IN mRNA nuclear export pathway; ASSOCIATED WITH tooth agenesis (ortholog); FOUND IN GATOR2 complex (ortholog); kinetochore (ortholog); lysosomal membrane (ortholog) NW_004955402 679109 698624 - 102010537 AGCD01000028;AGCD01000029;GBBH01139869;GBCB01023252;XM_013512934 XP_013368388 MODEL 9006572 ncrna LOC102021816 uncharacterized LOC102021816 NW_004955447 11714605 11734638 + 102021816 AGCD01040914;AGCD01040915;AGCD01040916;GBDF01081165;XR_262420 MODEL 8791260 protein-coding Qtman queuosine-tRNA mannosyltransferase ENCODES a protein that exhibits tRNA-queuosine(34) beta-mannosyltransferase activity (ortholog); INVOLVED IN regulation of translation (ortholog); tRNA modification (ortholog); tRNA wobble guanine modification (ortholog); ASSOCIATED WITH myoepithelioma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955440 10334584 10702436 - 102017605 AGCD01036390;AGCD01036391;AGCD01036392;AGCD01036393;AGCD01036394;AGCD01036395;AGCD01036396;AGCD01036397;GBCB01025133;XM_005390782;XM_005390783;XM_005390784;XM_005390785;XM_005390786;XM_005390787;XM_013517453;XM_013517454;XM_013517455;XM_013517456 XP_005390839;XP_005390840;XP_005390841;XP_005390842;XP_005390843;XP_005390844;XP_013372907;XP_013372908;XP_013372909;XP_013372910 MODEL 9007476 protein-coding LOC102028677 protein LEG1 homolog NW_004955436 8600317 8623884 - 102028677 AGCD01033743;XM_013516597 XP_013372051 MODEL 10259679 protein-coding LOC106148226 uncharacterized LOC106148226 NW_004955418 853246 866497 - 106148226 AGCD01018692;GBDK01419922;XM_013512870 XP_013368324 MODEL 9021175 protein-coding Tpo thyroid peroxidase ENCODES a protein that exhibits iodide peroxidase activity (ortholog); INVOLVED IN cellular response to nitric oxide (ortholog); embryonic hemopoiesis (ortholog); response to lipid (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH autoimmune disease (ortholog); congenital hypothyroidism (ortholog); Congenital Nongoitrous Hypothyroidism (ortholog); FOUND IN cell surface (ortholog) NW_004955487 485029 530287 - 102007022 AGCD01059218;AGCD01059219;AGCD01059220;AGCD01059221;GBDI01010368;GBDI01010369;XM_005404339 XP_005404396 MODEL 8971750 pseudo LOC102012841 LYR motif-containing protein 1 pseudogene NW_004955466 2598628 2602417 - 102012841 AGCD01050748 MODEL 8996610 ncrna LOC102017739 uncharacterized LOC102017739 NW_004955452 16271314 16273308 + 102017739 AGCD01044504;XR_262702 MODEL 9045347 protein-coding Rfx8 regulatory factor X8 NW_004955470 7128811 7191466 - 102017765 AGCD01052792;AGCD01052793;AGCD01052794;GBDF01085190;XM_005400761 XP_005400818 MODEL 8967512 protein-coding Btg4 BTG anti-proliferation factor 4 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); INVOLVED IN maternal-to-zygotic transition of gene expression (ortholog); negative regulation of mitotic cell cycle (ortholog); ASSOCIATED WITH Oocyte/Zygote/Embryo Maturation Arrest 8 (ortholog) NW_004955412 13137273 13250261 - 102013397 AGCD01012829;GBBH01185406;XM_005378059;XM_013511008;XM_013511009;XM_013511010;XM_013511011;XM_013511012;XM_013511014;XM_013511015;XM_013511016 XP_005378116;XP_013366462;XP_013366463;XP_013366464;XP_013366465;XP_013366466;XP_013366468;XP_013366469;XP_013366470 MODEL 8769488 pseudo LOC102029047 importin subunit alpha-1 pseudogene NW_004955407 29619954 29621525 + 102029047 AGCD01007610 MODEL 9027147 pseudo LOC102006703 cyclin-O pseudogene NW_004955515 1305213 1307829 + 102006703 AGCD01067223 MODEL 9030956 pseudo LOC102030470 ribosome production factor 2 homolog pseudogene NW_004955435 18057627 18058677 + 102030470 AGCD01033383 MODEL 8839807 protein-coding Pds5b PDS5 cohesin associated factor B ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN lens development in camera-type eye (ortholog); mitotic sister chromatid cohesion (ortholog); negative regulation of cell population proliferation (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955431 13083229 13268680 - 102009532 AGCD01030281;AGCD01030282;AGCD01030283;AGCD01030284;AGCD01030285;AGCD01030286;AGCD01030287;AGCD01030288;AGCD01030289;AGCD01030290;AGCD01030291;AGCD01030292;AGCD01030293;GBCQ01010023;XM_005387707;XM_005387708;XM_005387709;XM_005387710;XM_013515891 XP_005387764;XP_005387765;XP_005387766;XP_005387767;XP_013371345 MODEL 8967950 protein-coding Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 ENCODES a protein that exhibits 3',5'-cyclic-AMP phosphodiesterase activity (ortholog); ATP binding (ortholog); ATP diphosphatase activity (ortholog); INVOLVED IN 3'-phosphoadenosine 5'-phosphosulfate metabolic process (ortholog); adipose tissue development (ortholog); adult locomotory behavior (ortholog); PARTICIPATES IN insulin signaling pathway; niacin metabolic pathway; pantothenic acid metabolic pathway; ASSOCIATED WITH Aortic Calcification (ortholog); aortic valve disease 1 (ortholog); arterial calcification of infancy (ortholog); FOUND IN apical dendrite (ortholog); basal dendrite (ortholog); basolateral plasma membrane (ortholog) NW_004955436 12416147 12477214 + 102030663 AGCD01033841;GBCE01001596;GBDJ01419766;XM_013516652 XP_013372106 MODEL 9043098 pseudo LOC102011212 rRNA-processing protein FCF1 homolog pseudogene NW_004955494 5808071 5843724 - 102011212 AGCD01061526 MODEL 8827670 pseudo LOC102026344 annexin A7 pseudogene NW_004955433 10981247 10982924 + 102026344 AGCD01031643 MODEL 8762799 protein-coding LOC102008562 carboxylesterase 1D-like NW_004955433 13405185 13440775 - 102008562 AGCD01031690;GBDJ01424046;XM_005388329;XM_005388330 XP_005388386;XP_005388387 MODEL 8891776 protein-coding LOC102023537 CD209 antigen-like protein C NW_004955563 1506889 1511879 + 102023537 AGCD01074150;GBDI01304009;XM_005413155;XM_005413156 XP_005413212;XP_005413213 MODEL 8859532 ncrna LOC102015853 uncharacterized LOC102015853 NW_004955421 20885464 20907069 - 102015853 AGCD01022098;GBCE01066577;XR_001233827;XR_260798 MODEL 8860751 protein-coding LOC102010451 olfactory receptor 1361-like NW_004955408 1580644 1581941 + 102010451 AGCD01007965;XM_005376561 XP_005376618 MODEL 8969773 protein-coding Ralgapa1 Ral GTPase activating protein catalytic subunit alpha 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); ASSOCIATED WITH genetic disease (ortholog); long QT syndrome (ortholog); Muscle Hypotonia (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955409 25336503 25582881 + 102027724 AGCD01010113;AGCD01010114;AGCD01010115;AGCD01010116;AGCD01010117;AGCD01010118;GBDF01112173;XM_005376915;XM_005376917;XM_005376919;XM_013510369;XM_013510370;XM_013510371;XM_013510372;XM_013510373 XP_005376972;XP_005376974;XP_005376976;XP_013365823;XP_013365824;XP_013365825;XP_013365826;XP_013365827 MODEL 8946942 pseudo LOC102008563 60S ribosomal protein L39-like NW_004955520 1054945 1055417 - 102008563 AGCD01068042 MODEL 9029961 protein-coding S100a14 S100 calcium binding protein A14 ENCODES a protein that exhibits chemokine receptor binding (ortholog); INVOLVED IN defense response to bacterium (ortholog); positive regulation of granulocyte chemotaxis (ortholog); positive regulation of monocyte chemotaxis (ortholog); FOUND IN cytosol (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955545 261483 263689 - 102014174 AGCD01071781;GBDJ01073258;XM_005411418 XP_005411475 MODEL 8713997 protein-coding Slc1a2 solute carrier family 1 member 2 ENCODES a protein that exhibits glutamate:sodium symporter activity (ortholog); high-affinity L-glutamate transmembrane transporter activity (ortholog); L-cysteine transmembrane transporter activity (ortholog); INVOLVED IN adult behavior (ortholog); cellular response to cocaine (ortholog); D-aspartate import across plasma membrane (ortholog); PARTICIPATES IN amyotrophic lateral sclerosis pathway; ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); Alzheimer's disease (ortholog); FOUND IN astrocyte projection (ortholog); axolemma (ortholog); axon (ortholog) NW_004955422 10929987 11082220 + 102009619 AGCD01022749;GBDK01332009;XM_005384124;XM_005384125;XM_013514335 XP_005384181;XP_005384182;XP_013369789 MODEL 8799438 pseudo LOC102024540 sodium/potassium-transporting ATPase subunit beta-3 pseudogene NW_004955411 34920604 34921576 + 102024540 AGCD01012417 MODEL 8947834 protein-coding Sf3b1 splicing factor 3b subunit 1 ENCODES a protein that exhibits chromatin binding (ortholog); pre-mRNA binding (ortholog); splicing factor binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); blastocyst formation (ortholog); mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); chronic myelogenous leukemia, BCR-ABL1 positive (ortholog); FOUND IN B-WICH complex (ortholog); catalytic step 2 spliceosome (ortholog); chromatin (ortholog) NW_004955403 3134960 3163395 + 102025074 AGCD01001754;GBCC01000595;XM_005373873 XP_005373930 MODEL 8767910 ncrna LOC102019303 uncharacterized LOC102019303 NW_004955513 1028739 1031639 - 102019303 AGCD01066838;GBCB01080479;XR_001231742 MODEL 39131577 protein-coding SMIM32 small integral membrane protein 32 10286357 protein-coding LOC102028031 uncharacterized LOC102028031 NW_004955569 326207 334651 + 102028031 AGCD01074573;GBCE01117509;XM_013509358 XP_013364812 MODEL 9055897 protein-coding Snx8 sorting nexin 8 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); intracellular protein transport (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN early endosome membrane (ortholog); retromer complex (ortholog) NW_004955460 9689654 9743891 - 102023782 AGCD01048548;AGCD01048549;GBCE01097252;XM_005397825;XM_013521218 XP_005397882;XP_013376672 MODEL 8923858 pseudo LOC102005598 pre-mRNA-splicing factor SLU7 pseudogene NW_004955419 21338887 21343992 - 102005598 AGCD01020272 MODEL 39131551 protein-coding PTGES3L prostaglandin E synthase 3 like 10202566 ncrna LOC106147131 uncharacterized LOC106147131 NW_004955521 2847933 2853277 + 106147131 AGCD01068215;XR_001231888 MODEL 8830631 pseudo LOC102009701 heterogeneous nuclear ribonucleoprotein A1-like NW_004955411 2718176 2739446 - 102009701 AGCD01011515;AGCD01011516 MODEL 8959600 pseudo LOC102025980 eukaryotic translation initiation factor 4E pseudogene NW_004955408 35832410 35833045 - 102025980 AGCD01008963 MODEL 8771683 protein-coding Rbm39 RNA binding motif protein 39 ENCODES a protein that exhibits RS domain binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN regulation of mRNA splicing, via spliceosome (ortholog); regulation of transcription by RNA polymerase II (ortholog); FOUND IN nuclear speck (ortholog); protein-containing complex (ortholog) NW_004955422 25719771 25755757 + 102005389 AGCD01023264;AGCD01023265;AGCD01023266;GBBH01034224;XM_005384769;XM_005384770;XM_005384771;XM_005384772 XP_005384826;XP_005384827;XP_005384828;XP_005384829 MODEL 8931135 protein-coding LOC102011649 NADH-cytochrome b5 reductase 2 ENCODES a protein that exhibits cytochrome-b5 reductase activity, acting on NAD(P)H (ortholog); FOUND IN Golgi apparatus (ortholog); membrane (ortholog) NW_004955414 23421387 23427883 - 102011649 AGCD01015497;GBCE01040815;GBDJ01193166;XM_013511703 XP_013367157 MODEL 8789268 ncrna LOC102011218 uncharacterized LOC102011218 NW_004955424 20490173 20500552 + 102011218 AGCD01024856;AGCD01024857;AGCD01024858;GBCB01025533;XR_001234179;XR_261091 MODEL 8942875 protein-coding Wdr54 WD repeat domain 54 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); negative regulation of receptor internalization (ortholog); regulation of epidermal growth factor receptor signaling pathway (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog); vesicle (ortholog) NW_004955424 11358694 11362138 - 102003257 AGCD01024564;GBDK01237577;XM_005385517;XM_005385518;XM_005385519 XP_005385574;XP_005385575;XP_005385576 MODEL 8997435 protein-coding Prss22 serine protease 22 ENCODES a protein that exhibits peptidase activator activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN positive regulation of peptidase activity (ortholog); proteolysis (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN extracellular region (ortholog) NW_004955442 14618859 14623508 - 102018775 AGCD01037830;GBCE01133908;XM_005391410 XP_005391467 MODEL 39133246 snrna U4 U4 spliceosomal RNA 8984232 ncrna LOC102027341 uncharacterized LOC102027341 NW_004955438 20132390 20140659 - 102027341 AGCD01035509;GBDF01176697;XR_261952 MODEL 8748015 protein-coding Sel1l SEL1L adaptor subunit of SYVN1 ubiquitin ligase ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN ERAD pathway (ortholog); protein secretion (ortholog); response to endoplasmic reticulum stress (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); NEURODEVELOPMENTAL DISORDER WITH HYPOTONIA, POOR GROWTH, DYSMORPHIC FACIES, AND AGAMMAGLOBULINEMIA (ortholog); NEURODEVELOPMENTAL DISORDER WITH POOR GROWTH, ABSENT SPEECH, PROGRESSIVE ATAXIA, AND DYSMORPHIC FACIES (ortholog); FOUND IN Derlin-1 retrotranslocation complex (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955438 5030915 5082015 - 102027339 AGCD01035057;GBCC01026837;XM_005390240 XP_005390297 MODEL 8977350 ncrna LOC102028680 uncharacterized LOC102028680 NW_004955540 2070310 2077368 - 102028680 AGCD01071312;GBCQ01151530;XR_264824 MODEL 8883496 protein-coding Prim2 DNA primase subunit 2 ENCODES a protein that exhibits 4 iron, 4 sulfur cluster binding (ortholog); DNA-directed RNA polymerase activity (ortholog); DNA/RNA hybrid binding (ortholog); INVOLVED IN DNA replication initiation (ortholog); DNA replication, synthesis of primer (ortholog); FOUND IN alpha DNA polymerase:primase complex (ortholog); nucleoplasm (ortholog) NW_004955502 2642328 2898919 - 102025706 AGCD01064302;AGCD01064303;AGCD01064304;AGCD01064305;GBDJ01401975;XM_005406880;XM_005406881;XM_013505840;XM_013505841 XP_005406937;XP_005406938;XP_013361294;XP_013361295 MODEL 9020184 pseudo LOC102018882 microtubule-associated protein RP/EB family member 1 pseudogene NW_004955403 4209027 4215282 + 102018882 AGCD01001781 MODEL 8843888 pseudo LOC102012843 T-complex protein 1 subunit alpha pseudogene NW_004955466 3144704 3150696 - 102012843 AGCD01050787 MODEL 8729440 protein-coding Ppm1h protein phosphatase, Mg2+/Mn2+ dependent 1H ENCODES a protein that exhibits identical protein binding (ortholog); phosphoprotein phosphatase activity (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); nucleoplasm (ortholog) NW_004955458 9742629 9899167 - 102007198 AGCD01047661;AGCD01047662;AGCD01047663;AGCD01047664;AGCD01047665;GBBH01091029;XM_013520940 XP_013376394 MODEL 8743649 protein-coding Pcdh7 protocadherin 7 INVOLVED IN regulation of postsynapse assembly (ortholog); FOUND IN cell junction (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955443 14765994 15160377 - 102014090 AGCD01038522;AGCD01038523;AGCD01038524;AGCD01038525;AGCD01038526;AGCD01038527;AGCD01038528;AGCD01038529;GBDJ01080930;XM_005392020;XM_005392021;XM_005392022;XM_005392023;XM_005392024;XM_005392025;XM_013518075;XM_013518076;XM_013518077;XM_013518078;XM_013518079 XP_005392077;XP_005392078;XP_005392079;XP_005392080;XP_005392081;XP_005392082;XP_013373529;XP_013373530;XP_013373531;XP_013373532;XP_013373533 MODEL 8869592 protein-coding Trip6 thyroid hormone receptor interactor 6 ENCODES a protein that exhibits interleukin-1 receptor binding (ortholog); kinase binding (ortholog); INVOLVED IN chordate embryonic development (ortholog); positive regulation of cell migration (ortholog); positive regulation of non-canonical NF-kappaB signal transduction (ortholog); FOUND IN cytoplasm (ortholog); cytoskeleton (ortholog); cytosol (ortholog) NW_004955573 102649 107047 - 102012378 AGCD01074962;GBCE01054728;XM_005413686 XP_005413743 MODEL 9001166 protein-coding Rmdn3 regulator of microtubule dynamics 3 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN intracellular calcium ion homeostasis (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); intercellular bridge (ortholog) NW_004955416 7591049 7610164 - 102025354 AGCD01016994;AGCD01016995;GBDI01223624;XM_005381256;XM_005381257 XP_005381313;XP_005381314 MODEL 8836743 protein-coding LOC102007067 laminin subunit alpha-3-like NW_004955402 12016293 12019255 + 102007067 AGCD01000337;XM_005372709 XP_005372766 MODEL 8982356 protein-coding Rfxank regulatory factor X associated ankyrin containing protein ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); histone deacetylase binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); Ras protein signal transduction (ortholog); ASSOCIATED WITH genetic disease (ortholog); MHC class II deficiency (ortholog); MHC CLASS II DEFICIENCY 1 (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955524 2635358 2642206 - 102009536 AGCD01068827;GBDK01070389;XM_005409620;XM_005409621;XM_013507211;XM_013507212;XM_013507214 XP_005409677;XP_005409678;XP_013362665;XP_013362666;XP_013362668 MODEL 8838018 protein-coding LOC102006704 type-1 protein phosphatase inhibitor 4-like NW_004955516 5498178 5498969 + 102006704 AGCD01067562;GBDF01004265;XM_005409000 XP_005409057 MODEL 8780599 protein-coding Lipi lipase I ENCODES a protein that exhibits glycerophospholipase activity (ortholog); heparin binding (ortholog); INVOLVED IN lipid catabolic process (ortholog); ASSOCIATED WITH Hypertriglyceridemia (ortholog); HYPERTRIGLYCERIDEMIA 1 (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog) NW_004955407 16013285 16071187 - 102004244 AGCD01007202;AGCD01007203;AGCD01007204;AGCD01007205;GBDF01049474;GBDJ01190261;XM_013503778 XP_013359232 MODEL 8899166 protein-coding Slc1a3 solute carrier family 1 member 3 ENCODES a protein that exhibits acidic amino acid transmembrane transporter activity (ortholog); amino acid binding (ortholog); glutamate binding (ortholog); INVOLVED IN auditory behavior (ortholog); cell morphogenesis involved in neuron differentiation (ortholog); cellular response to cocaine (ortholog); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); epilepsy (ortholog); FOUND IN basal plasma membrane (ortholog); basolateral plasma membrane (ortholog); cell periphery (ortholog) NW_004955426 21371985 21450749 + 102012877 AGCD01026587;GBDI01024508;XM_005386210;XM_013514995 XP_005386267;XP_013370449 MODEL 8896297 protein-coding Pdss1 decaprenyl diphosphate synthase subunit 1 ENCODES a protein that exhibits all-trans-decaprenyl-diphosphate synthase activity (ortholog); all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity (ortholog); prenyltransferase activity (ortholog); INVOLVED IN isoprenoid biosynthetic process (ortholog); ubiquinone biosynthetic process (ortholog); ASSOCIATED WITH coenzyme Q10 deficiency disease (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN heterotetrameric polyprenyl diphosphate synthase complex (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955429 2783847 2818204 - 102004953 AGCD01028438;GBCC01032026;GBDI01106203;XM_013515433 XP_013370887 MODEL 8717841 gene LOC102010841 Ig lambda-2 chain C regions-like NW_004955442 17155684 17169023 - 102010841 AGCD01037943;AGCD01037944;XM_005391686;XM_005391687 MODEL 8969019 pseudo LOC102021822 uncharacterized LOC102021822 NW_004955449 1866887 1881411 + 102021822 AGCD01041814 MODEL 8726455 protein-coding LOC102026345 chromosome unknown open reading frame, human C19orf44 NW_004955524 1235137 1245526 - 102026345 AGCD01068740;GBDF01049996;XM_005409496;XM_005409497;XM_005409498;XM_005409499 XP_005409553;XP_005409554;XP_005409555;XP_005409556 MODEL 39131921 snorna SNORA70 Small nucleolar RNA SNORA70 8788127 protein-coding Plekhg3 pleckstrin homology and RhoGEF domain containing G3 ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN regulation of cell migration (ortholog); regulation of establishment of cell polarity (ortholog) NW_004955466 5172603 5212518 - 102026957 AGCD01050868;AGCD01050869;GBBH01091213;XM_013521957;XM_013521958;XM_013521959;XM_013521960;XM_013521961;XM_013521963;XM_013521964 XP_013377411;XP_013377412;XP_013377413;XP_013377414;XP_013377415;XP_013377417;XP_013377418 MODEL 8832729 protein-coding Tpp1 tripeptidyl peptidase 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); lysophosphatidic acid binding (ortholog); peptidase activity (ortholog); INVOLVED IN bone resorption (ortholog); epithelial cell differentiation (ortholog); lysosomal protein catabolic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Angelman syndrome (ortholog); autosomal recessive spinocerebellar ataxia 7 (ortholog); FOUND IN Golgi apparatus (ortholog); lysosome (ortholog); melanosome (ortholog) NW_004955414 22324847 22330912 - 102028524 AGCD01015453;GBCE01099114;XM_005380168;XM_005380169 XP_005380225;XP_005380226 MODEL 8911053 ncrna LOC102003836 uncharacterized LOC102003836 NW_004955407 41449979 41453452 + 102003836 AGCD01007866;XR_259639 MODEL 8775479 pseudo LOC102029051 receptor expression-enhancing protein 5 pseudogene NW_004955457 11567630 11568450 + 102029051 AGCD01046974 MODEL 9044256 protein-coding Slc6a2 solute carrier family 6 member 2 ENCODES a protein that exhibits actin binding (ortholog); alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN dopamine uptake (ortholog); neurotransmitter reuptake (ortholog); neurotransmitter transport (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH alcohol dependence (ortholog); depressive disorder (ortholog); heart conduction disease (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog); presynaptic membrane (ortholog) NW_004955433 13170986 13216270 + 102006271 AGCD01031679;AGCD01031680;AGCD01031681;GBDK01249946;XM_005388320;XM_005388321;XM_005388322 XP_005388377;XP_005388378;XP_005388379 MODEL 8759788 protein-coding S100a16 S100 calcium binding protein A16 ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN response to calcium ion (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955545 254370 260471 - 102013649 AGCD01071781;GBCE01004299;XM_005411416;XM_005411417 XP_005411473;XP_005411474 MODEL 8976831 ncrna LOC102008564 uncharacterized LOC102008564 NW_004955523 46481 51442 + 102008564 AGCD01068431;GBBH01049104;XR_001231942;XR_264632 MODEL 8758783 ncrna LOC102007069 uncharacterized LOC102007069 NW_004955402 22117994 22162557 - 102007069 AGCD01000599;AGCD01000600;AGCD01000601;AGCD01000602;GBBH01029920;XR_259062 MODEL 8793559 ncrna LOC102023538 uncharacterized LOC102023538 NW_004955445 7472747 7495768 - 102023538 AGCD01039542;GBDF01187742;XR_001235576;XR_001235577;XR_001235578;XR_001235579;XR_262308 MODEL 8999609 protein-coding Snx9 sorting nexin 9 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); Arp2/3 complex binding (ortholog); identical protein binding (ortholog); INVOLVED IN cleavage furrow formation (ortholog); endocytosis (ortholog); endosomal transport (ortholog); ASSOCIATED WITH Experimental Mammary Neoplasms (ortholog); FOUND IN clathrin-coated pit (ortholog); clathrin-coated vesicle (ortholog); cuticular plate (ortholog) NW_004955439 4422385 4503408 - 102015984 AGCD01035709;AGCD01035710;AGCD01035711;GBDI01118897;XM_005390533 XP_005390590 MODEL 10354872 ncrna LOC106147132 uncharacterized LOC106147132 NW_004955521 2576473 2601324 + 106147132 AGCD01068209;AGCD01068210;GBBH01083125;XR_001231889 MODEL 10146756 protein-coding LOC106148227 translation initiation factor IF-2-like NW_004955418 950730 965747 + 106148227 AGCD01018695;GBDJ01383561;XM_013512871 XP_013368325 MODEL 8725341 protein-coding Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 ENCODES a protein that exhibits tRNA-guanosine(34) queuine transglycosylase activity (ortholog); INVOLVED IN tRNA wobble guanine modification (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955495 1851861 1857599 + 102008955 AGCD01061735;AGCD01061736;GBCE01028382;XM_005405610 XP_005405667 MODEL 8877912 pseudo LOC102009712 olfactory receptor 2S2-like NW_004955472 459622 466367 + 102009712 AGCD01053339 MODEL 8714078 ncrna LOC102011654 uncharacterized LOC102011654 NW_004955476 4365503 4385423 - 102011654 AGCD01055280;GBDI01309143;XR_001230807;XR_001230808;XR_001230809;XR_001230810 MODEL 8830279 protein-coding LOC102025981 uncharacterized LOC102025981 NW_004955408 26937492 26964064 - 102025981 AGCD01008676;GBDF01076789;XM_005376587 XP_005376644 MODEL 8751269 protein-coding Rbm41 RNA binding motif protein 41 NW_004955490 8912616 8974748 + 102021135 AGCD01060298;GBBH01107168;XM_005404705;XM_005404706 XP_005404762;XP_005404763 MODEL 8864415 ncrna LOC102026346 uncharacterized LOC102026346 NW_004955435 12716934 12734019 + 102026346 AGCD01033163;GBDI01070352;XR_001234862;XR_001234863;XR_001234864;XR_261681 MODEL 39133249 snrna U4 U4 spliceosomal RNA 8743916 protein-coding LOC102030471 putative PRAME family member 26 NW_004955532 37539 67543 + 102030471 AGCD01070093;AGCD01070094;AGCD01070095;AGCD01070096;GBDF01153103;XM_013507567 XP_013363021 MODEL 8786768 protein-coding Btk Bruton tyrosine kinase ENCODES a protein that exhibits identical protein binding (ortholog); non-membrane spanning protein tyrosine kinase activity (ortholog); phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); INVOLVED IN B cell affinity maturation (ortholog); B cell receptor signaling pathway (ortholog); cell maturation (ortholog); PARTICIPATES IN erythropoietin signaling pathway; FasL mediated signaling pathway; Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH Adenoviridae Infections (ortholog); agammaglobulinemia (ortholog); agammaglobulinemia 1 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955503 7483819 7515085 - 102026026 AGCD01064794;GBBH01034514;XM_005406951;XM_005406952 XP_005407008;XP_005407009 MODEL 9065069 protein-coding Ppm1j protein phosphatase, Mg2+/Mn2+ dependent 1J ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN protein dephosphorylation (ortholog) NW_004955435 16124087 16129296 - 102006493 AGCD01033295;GBDF01004408;XM_005388968 XP_005389025 MODEL 8946763 protein-coding LOC102028682 translation initiation factor IF-2-like NW_004955545 2561508 2565979 - 102028682 AGCD01071910;GBCB01103266;XM_005411677;XM_013508198;XM_013508199;XR_264875;XR_264876 XP_005411734;XP_013363652;XP_013363653 MODEL 8935942 protein-coding Sf3b2 splicing factor 3b subunit 2 INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH genetic disease (ortholog); Goldenhar syndrome (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955422 19242041 19266479 - 102020130 AGCD01022989;AGCD01022990;GBBH01033396;GBDF01043546;XM_005384431 XP_005384488 MODEL 8953260 pseudo LOC102028033 uncharacterized LOC102028033 NW_004955571 1357344 1382625 + 102028033 AGCD01074875;AGCD01074876;AGCD01074877 MODEL 8861276 protein-coding Rmi1 RecQ mediated genome instability 1 INVOLVED IN double-strand break repair via homologous recombination (ortholog); glucose homeostasis (ortholog); multicellular organism growth (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); COVID-19 (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); RecQ family helicase-topoisomerase III complex (ortholog) NW_004955432 3215372 3241840 - 102003897 AGCD01030640;AGCD01030641;AGCD01030642;AGCD01030643;GBCE01037371;GBDF01118985;XM_013516017 XP_013371471 MODEL 8936850 pseudo LOC102005606 eukaryotic translation initiation factor 5A-2 pseudogene NW_004955422 22271814 22272275 - 102005606 AGCD01023153 MODEL 8841448 protein-coding Ptgfr prostaglandin F receptor ENCODES a protein that exhibits prostaglandin F receptor activity (ortholog); INVOLVED IN cellular response to prostaglandin D stimulus (ortholog); maternal process involved in female pregnancy (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH Airway Obstruction (ortholog); endometriosis (ortholog); myoepithelioma (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955423 14768208 14816462 - 102010499 AGCD01023777;AGCD01023778;AGCD01023779;GBCQ01179014;XM_005385183;XM_013514554;XM_013514555 XP_005385240;XP_013370008;XP_013370009 MODEL 9040485 pseudo LOC102017740 methylosome subunit pICln-like NW_004955452 6163421 6165157 + 102017740 AGCD01044092 MODEL 8989146 pseudo LOC102010453 adenosine kinase pseudogene NW_004955458 14363282 14364041 - 102010453 AGCD01047832 MODEL 8885925 protein-coding Ralgapa2 Ral GTPase activating protein catalytic subunit alpha 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); Ral protein signal transduction (ortholog); regulation of exocyst localization (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955415 28414856 28663485 - 102022075 AGCD01016641;AGCD01016642;AGCD01016643;GBCQ01150403;XM_005380947;XM_013512249 XP_005381004;XP_013367703 MODEL 8926564 protein-coding Slc1a4 solute carrier family 1 member 4 ENCODES a protein that exhibits chloride channel activity (ortholog); L-alanine transmembrane transporter activity (ortholog); L-aspartate transmembrane transporter activity (ortholog); INVOLVED IN cognition (ortholog); hydroxyproline transport (ortholog); L-alanine import across plasma membrane (ortholog); PARTICIPATES IN argininosuccinic aciduria pathway; carbamoyl phosphate synthetase I deficiency pathway; citrullinemia pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); microcephaly (ortholog); FOUND IN centrosome (ortholog); dendrite (ortholog); intermediate filament (ortholog) NW_004955424 19474082 19499592 - 102005394 AGCD01024827;GBBH01089723;XM_005385695 XP_005385752 MODEL 8703767 protein-coding LOC102010843 kallikrein-2-like NW_004955559 416199 433647 - 102010843 AGCD01073584;AGCD01073585;AGCD01073586;GBDJ01062263;GBDJ01062266;XM_005412758 XP_005412815 MODEL 8840528 pseudo LOC102021823 isocitrate dehydrogenase [NADP], mitochondrial pseudogene NW_004955402 16758485 16759946 + 102021823 AGCD01000488 MODEL 10315948 ncrna LOC106149970 uncharacterized LOC106149970 NW_004955458 5549504 5550194 + 106149970 AGCD01047499;GBDF01112323;XR_001236466 MODEL 8760468 protein-coding Prss23 serine protease 23 ASSOCIATED WITH COVID-19 (ortholog); exudative vitreoretinopathy 1 (ortholog); melanoma (ortholog); FOUND IN nucleus (ortholog) NW_004955414 6202383 6213521 - 102007985 AGCD01014913;AGCD01014914;GBCQ01178355;XM_005379735;XM_005379736 XP_005379792;XP_005379793 MODEL 10320433 protein-coding LOC106148228 translation initiation factor IF-2-like NW_004955418 1043295 1043988 - 106148228 AGCD01018703;GBDF01128659;XM_013512873 XP_013368327 MODEL 8765168 pseudo LOC102018885 histone H2A.Z pseudogene NW_004955452 16500190 16501449 + 102018885 AGCD01044514;XM_005395228;XM_005395229 MODEL 8820980 protein-coding Enpp2 ectonucleotide pyrophosphatase/phosphodiesterase 2 ENCODES a protein that exhibits alkylglycerophosphoethanolamine phosphodiesterase activity (ortholog); calcium ion binding (ortholog); D-type glycerophospholipase activity (ortholog); INVOLVED IN cell chemotaxis (ortholog); cellular response to cadmium ion (ortholog); cellular response to estradiol stimulus (ortholog); ASSOCIATED WITH Birth Weight (ortholog); Cadmium Poisoning (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN extracellular region (ortholog) NW_004955417 25308424 25384307 - 102007119 AGCD01018478;AGCD01018479;GBCE01135046;XM_005381910;XM_005381911;XM_005381912;XM_013512836 XP_005381967;XP_005381968;XP_005381969;XP_013368290 MODEL 8854358 protein-coding Sel1l2 SEL1L2 adaptor subunit of SYVN1 ubiquitin ligase FOUND IN cilium (ortholog); nuclear speck (ortholog) NW_004955415 23290343 23392613 - 102005797 AGCD01016552;AGCD01016553;GBDK01223152;XM_013512280;XM_013512281 XP_013367734;XP_013367735 MODEL 9032861 protein-coding Plekhg4 pleckstrin homology and RhoGEF domain containing G4 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rho/Rac/Cdc42 mediated signaling pathway; ASSOCIATED WITH spinocerebellar ataxia 31 (ortholog) NW_004955484 9344830 9356182 - 102006352 AGCD01058415;GBDF01154360;XM_005403662;XM_013503891;XM_013503892 XP_005403719;XP_013359345;XP_013359346 MODEL 9024939 protein-coding LOC102012844 polycystic kidney disease protein 1-like 2 NW_004955413 408570 412526 + 102012844 AGCD01013464;GBDJ01203527;XM_005378678;XM_013511472 XP_005378735;XP_013366926 MODEL 39131377 protein-coding SMIM33 small integral membrane protein 33 8708577 protein-coding Triqk triple QxxK/R motif containing NW_004955417 9397726 9450794 - 102017014 AGCD01018052;GBDK01025200;XM_005381781;XM_005381782;XM_005381783;XM_013512847;XM_013512848 XP_005381838;XP_005381839;XP_005381840;XP_013368301;XP_013368302 MODEL 8846362 protein-coding Pcdh8 protocadherin 8 INVOLVED IN chemical synaptic transmission (ortholog); modulation of chemical synaptic transmission (ortholog); morphogenesis of embryonic epithelium (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic membrane (ortholog); Schaffer collateral - CA1 synapse (ortholog) NW_004955404 50403752 50413264 - 102008687 AGCD01004530;AGCD01004531;GBDK01404906;XM_013516722;XR_001235026;XR_001235027;XR_001235028;XR_001235029;XR_001235030 XP_013372176 MODEL 8981393 protein-coding LOC102029052 retinol dehydrogenase 16-like NW_004955458 4625564 4628337 - 102029052 AGCD01047423;XM_013520805 XP_013376259 MODEL 9015758 protein-coding Rfxap regulatory factor X associated protein ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH MHC class II deficiency (ortholog); MHC CLASS II DEFICIENCY 1 (ortholog); MHC CLASS II DEFICIENCY 4 (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955431 9200006 9209588 - 102014933 AGCD01030160;AGCD01030161;GBCB01034736;GBDJ01029212;XM_013515899 XP_013371353 MODEL 8699813 ncrna LOC102015854 uncharacterized LOC102015854 NW_004955489 8966832 8998732 + 102015854 AGCD01060025;GBDK01379970;XR_264026 MODEL 8911227 pseudo LOC102008568 ubiquitin-protein ligase E3C-like NW_004955532 1668535 1681482 + 102008568 AGCD01070197 MODEL 8775071 protein-coding Slc6a3 solute carrier family 6 member 3 ENCODES a protein that exhibits amine binding (ortholog); dopamine binding (ortholog); dopamine:sodium symporter activity (ortholog); INVOLVED IN adenohypophysis development (ortholog); cognition (ortholog); dopamine biosynthetic process (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH alcohol use disorder (ortholog); Alcohol Withdrawal Delirium (ortholog); Alcohol Withdrawal Seizures (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cell surface (ortholog) NW_004955504 721470 747553 - 102008439 AGCD01064826;AGCD01064827;AGCD01064828;GBDI01327941;XM_005407057 XP_005407114 MODEL 9060791 ncrna LOC102011220 uncharacterized LOC102011220 NW_004955425 27826699 27828785 - 102011220 AGCD01025989;GBDF01079916;XR_261178 MODEL 8876350 pseudo LOC102007072 60S ribosomal protein L5-like NW_004955450 3079256 3080465 - 102007072 AGCD01042421 MODEL 8787342 protein-coding Wdr55 WD repeat domain 55 INVOLVED IN rRNA processing (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955418 33237 37676 - 102025242 AGCD01018664;GBCQ01151900;XM_005382003 XP_005382060 MODEL 8964843 protein-coding Pdss2 decaprenyl diphosphate synthase subunit 2 ENCODES a protein that exhibits all-trans-decaprenyl-diphosphate synthase activity (ortholog); all-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate specific) activity (ortholog); prenyltransferase activity (ortholog); INVOLVED IN cerebellum development (ortholog); isoprenoid biosynthetic process (ortholog); regulation of body fluid levels (ortholog); ASSOCIATED WITH coenzyme Q10 deficiency disease (ortholog); focal segmental glomerulosclerosis (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); heterotetrameric polyprenyl diphosphate synthase complex (ortholog); mitochondrial matrix (ortholog) NW_004955411 32426604 32714337 - 102009477 AGCD01012317;AGCD01012318;AGCD01012319;AGCD01012320;AGCD01012321;AGCD01012322;AGCD01012323;AGCD01012324;AGCD01012325;AGCD01012326;AGCD01012327;AGCD01012328;AGCD01012329;AGCD01012330;AGCD01012331;AGCD01012332;AGCD01012333;AGCD01012334;AGCD01012335;GBCQ01099837;XM_005377839 XP_005377896 MODEL 8907185 pseudo LOC102017743 UPF0160 protein MYG1, mitochondrial pseudogene NW_004955454 2036921 2037774 + 102017743 AGCD01045001 MODEL 8805875 protein-coding LOC102019312 zinc finger protein 627-like NW_004955524 331603 343440 - 102019312 AGCD01068675;GBDI01011137;XM_005409479 XP_005409536 MODEL 8969110 ncrna LOC102025982 uncharacterized LOC102025982 NW_004955409 12686951 12701458 + 102025982 AGCD01009556;GBCB01000856;XR_259779 MODEL 10265533 protein-coding Prima1 proline rich membrane anchor 1 ENCODES a protein that exhibits enzyme binding (ortholog); protein-membrane adaptor activity (ortholog); INVOLVED IN establishment of localization in cell (ortholog); ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy (ortholog); muscular dystrophy (ortholog); FOUND IN membrane raft (ortholog); plasma membrane (ortholog) NW_004955438 15835641 15903484 - 106149170 AGCD01035385;AGCD01035386;AGCD01035387;AGCD01035388;GBDI01385092;GBDJ01044136;XM_013517273 XP_013372727 MODEL 39133251 snrna U4 U4 spliceosomal RNA 8868781 protein-coding Ralgapb Ral GTPase activating protein non-catalytic subunit beta ENCODES a protein that exhibits GTPase activator activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); Ral protein signal transduction (ortholog); regulation of exocyst localization (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); High Myopia (ortholog); intellectual disability (ortholog) NW_004955445 18146316 18241128 - 102010426 AGCD01039898;AGCD01039899;AGCD01039900;AGCD01039901;GBCE01075919;XM_005392533;XM_005392534;XM_013518287;XM_013518288 XP_005392590;XP_005392591;XP_013373741;XP_013373742 MODEL 8739342 ncrna LOC102006708 uncharacterized LOC102006708 NW_004955437 17938818 17949903 - 102006708 AGCD01034764;AGCD01034765;XR_001235038;XR_261890 MODEL 9065187 protein-coding Timm10 translocase of inner mitochondrial membrane 10 ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein-folding chaperone binding (ortholog); unfolded protein holdase activity (ortholog); INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); rhabdomyosarcoma (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial intermembrane space chaperone complex (ortholog) NW_004955511 2498498 2500828 - 102017900 AGCD01066409;GBCE01052696;XM_005407996 XP_005408053 MODEL 10143383 pseudo LOC106149971 spindle and kinetochore-associated protein 3 pseudogene NW_004955458 4249312 4249690 - 106149971 AGCD01047394 MODEL 9030494 protein-coding S100a3 S100 calcium binding protein A3 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); prostate cancer (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955545 195834 205442 - 102012686 AGCD01071776;GBDJ01404708;XM_005411412;XM_005411413;XM_013508202;XM_013508203;XM_013508204 XP_005411469;XP_005411470;XP_013363656;XP_013363657;XP_013363658 MODEL 8782306 protein-coding Lipj lipase family member J NW_004955425 4337718 4368577 - 102023497 AGCD01025312;GBDF01225245;XM_005385874;XM_005385875;XM_013514896;XM_013514897;XM_013514898;XM_013514899;XM_013514900 XP_005385931;XP_005385932;XP_013370350;XP_013370351;XP_013370352;XP_013370353;XP_013370354 MODEL 8947675 protein-coding Sel1l3 SEL1L family member 3 NW_004955443 19317461 19406721 + 102019650 AGCD01038624;GBCQ01067499;XM_005392032;XM_013518080 XP_005392089;XP_013373534 MODEL 8976471 protein-coding Ppm1k protein phosphatase, Mg2+/Mn2+ dependent 1K ENCODES a protein that exhibits [3-methyl-2-oxobutanoate dehydrogenase (lipoamide)]-phosphatase activity (ortholog); manganese ion binding (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN branched-chain amino acid catabolic process (ortholog); regulation of mitochondrial membrane permeability involved in apoptotic process (ortholog); ASSOCIATED WITH congestive heart failure (ortholog); maple syrup urine disease (ortholog); mild variant of maple syrup urine disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955474 12229658 12250783 + 102024898 AGCD01054653;GBDI01006145;XM_013502772;XM_013502774 XP_013358226;XP_013358228 MODEL 8901116 ncrna LOC102028685 uncharacterized LOC102028685 NW_004955441 18244127 18254229 - 102028685 AGCD01037312;GBDI01285291;XR_262092 MODEL 8741943 pseudo LOC102027343 histidine triad nucleotide-binding protein 1 pseudogene NW_004955439 1368380 1368831 + 102027343 AGCD01035611 MODEL 10106591 ncrna LOC106147133 uncharacterized LOC106147133 NW_004955521 4272009 4282495 - 106147133 AGCD01068259;XR_001231890 MODEL 8836491 protein-coding LOC102024541 uncharacterized LOC102024541 NW_004955466 10751416 10758838 + 102024541 AGCD01051074;GBDF01119345;XM_005399200;XM_013521874;XR_001236768 XP_005399257;XP_013377328 MODEL 8747309 protein-coding LOC102028034 UDP-glucuronosyltransferase 2A1 NW_004955447 3108783 3151830 + 102028034 AGCD01040574;AGCD01040575;GBBH01000430;XM_005392794;XM_005392795;XM_005392796;XM_005392797;XM_013518561;XM_013518562;XM_013518563 XP_005392851;XP_005392852;XP_005392853;XP_005392854;XP_013374015;XP_013374016;XP_013374017 MODEL 39132526 snorna SNORA70 Small nucleolar RNA SNORA70 8968845 protein-coding LOC102011663 olfactory receptor 2T27-like NW_004955418 30179310 30182515 - 102011663 AGCD01019506;XM_013512880 XP_013368334 MODEL 8915414 ncrna LOC102010844 uncharacterized LOC102010844 NW_004955443 5803759 5817261 + 102010844 AGCD01038244;GBBH01211346;XR_262178 MODEL 8852543 ncrna LOC102007073 uncharacterized LOC102007073 NW_004955450 13276074 13290515 - 102007073 AGCD01042733;GBDF01306692;XR_262551;XR_262552 MODEL 9054593 ncrna LOC102026347 uncharacterized LOC102026347 NW_004955436 4649928 4653763 + 102026347 AGCD01033671;GBCQ01092889;XR_261757 MODEL 8930387 protein-coding Btla B and T lymphocyte associated ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); immune response-regulating cell surface receptor signaling pathway (ortholog); negative regulation of alpha-beta T cell proliferation (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog); plasma membrane protein complex (ortholog) NW_004955427 12804467 12837178 - 102026657 AGCD01027226;AGCD01027227;GBDI01324577;XM_005386387 XP_005386444 MODEL 8943901 protein-coding LOC102030472 uncharacterized LOC102030472 NW_004955437 3588392 3591231 + 102030472 AGCD01034326;GBCE01013393;XM_013516731 XP_013372185 MODEL 8793580 protein-coding Rbm42 RNA binding motif protein 42 INVOLVED IN negative regulation of mRNA splicing, via spliceosome (ortholog); FOUND IN precatalytic spliceosome (ortholog); spliceosomal complex (ortholog); U4/U6 x U5 tri-snRNP complex (ortholog) NW_004955468 4844780 4854261 + 102024989 AGCD01051922;GBDI01067655;XM_005400070;XM_005400071 XP_005400127;XP_005400128 MODEL 9019464 ncrna LOC102017747 uncharacterized LOC102017747 NW_004955409 1823879 1847047 - 102017747 AGCD01009184;GBDK01374880;XR_259745 MODEL 8912913 ncrna LOC102018892 uncharacterized LOC102018892 NW_004955455 1322663 1342562 + 102018892 AGCD01045573;AGCD01045574;GBDF01128397;XR_001236278;XR_001236279;XR_001236280;XR_001236281;XR_262813 MODEL 8898563 ncrna LOC102023543 uncharacterized LOC102023543 NW_004955449 4046689 4060150 + 102023543 AGCD01041872;AGCD01041873;GBDF01253999;XR_262488 MODEL 8745727 protein-coding Trir telomerase RNA component interacting RNase ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); 5'-3' exonuclease activity (ortholog); INVOLVED IN rRNA catabolic process (ortholog) NW_004955415 31831093 31834796 - 102020242 AGCD01016698;GBDK01012972;XM_005381022 XP_005381079 MODEL 8812534 protein-coding Sf3b3 splicing factor 3b subunit 3 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); negative regulation of protein catabolic process (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH prostate cancer (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955484 3307794 3357600 + 102004819 AGCD01058172;AGCD01058173;AGCD01058174;AGCD01058175;AGCD01058176;GBDF01118268;XM_005403485 XP_005403542 MODEL 8823551 protein-coding Rgcc regulator of cell cycle ENCODES a protein that exhibits kinase activator activity (ortholog); protein kinase activator activity (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); complement receptor mediated signaling pathway (ortholog); fibroblast activation (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Myocardial Ischemia (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nucleolus (ortholog) NW_004955518 4788857 4800273 - 102024839 AGCD01067838;GBBH01089561;XM_005409116 XP_005409173 MODEL 8865132 protein-coding Tpp2 tripeptidyl peptidase 2 ENCODES a protein that exhibits aminopeptidase activity (ortholog); identical protein binding (ortholog); peptide binding (ortholog); INVOLVED IN intracellular amino acid homeostasis (ortholog); protein catabolic process (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); Evans Syndrome, Immunodeficiency, and Premature Immunosenescence associated with Tripeptidyl-Peptidase II Deficiency (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); nuclear body (ortholog) NW_004955404 8465877 8528372 - 102018461 AGCD01003353;GBDF01050175;GBDF01050177;XM_013515923 XP_013371377 MODEL 8895369 pseudo LOC102009713 tubulin alpha-1 chain-like NW_004955415 27942717 27943523 - 102009713 AGCD01016636 MODEL 8859240 ncrna LOC102010457 uncharacterized LOC102010457 NW_004955462 7333301 7356659 - 102010457 AGCD01049301;AGCD01049302;GBDF01308302;XR_001236602;XR_001236603 MODEL 8934635 pseudo LOC102011221 DNA-directed RNA polymerase II subunit RPB3 pseudogene NW_004955426 24102744 24103895 + 102011221 AGCD01026668 MODEL 8904930 pseudo LOC102003840 matrin-3 pseudogene NW_004955408 32750191 32754243 - 102003840 AGCD01008854 MODEL 8841928 protein-coding Slc1a5 solute carrier family 1 member 5 ENCODES a protein that exhibits antiporter activity (ortholog); L-aspartate transmembrane transporter activity (ortholog); L-glutamine transmembrane transporter activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); L-aspartate import across plasma membrane (ortholog); L-glutamine import across plasma membrane (ortholog); PARTICIPATES IN argininosuccinic aciduria pathway; carbamoyl phosphate synthetase I deficiency pathway; citrullinemia pathway; ASSOCIATED WITH COVID-19 (ortholog); esophagus squamous cell carcinoma (ortholog); hereditary spastic paraplegia (ortholog); FOUND IN basal plasma membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955574 798004 806631 - 102030015 AGCD01075130;GBDF01209889;XM_013509576 XP_013365030 MODEL 9065288 protein-coding LOC102021828 zinc finger protein 883-like NW_004955624 123806 130903 - 102021828 AGCD01077437;XM_013510160 XP_013365614 MODEL 8765177 pseudo LOC102019317 ubiquitin-like domain-containing CTD phosphatase 1 pseudogene NW_004955435 16026713 16028322 + 102019317 AGCD01033293 MODEL 8898410 protein-coding Enpp3 ectonucleotide pyrophosphatase/phosphodiesterase 3 ENCODES a protein that exhibits ATP diphosphatase activity (ortholog); bis(5'-adenosyl)-pentaphosphatase activity (ortholog); bis(5'-adenosyl)-triphosphatase activity (ortholog); INVOLVED IN ATP metabolic process (ortholog); basophil activation involved in immune response (ortholog); inorganic diphosphate transport (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN apical plasma membrane (ortholog); external side of plasma membrane (ortholog); extracellular region (ortholog) NW_004955436 12310773 12384815 + 102019951 AGCD01033838;AGCD01033839;AGCD01033840;GBDK01141658;XM_005389205;XM_005389206 XP_005389262;XP_005389263 MODEL 8870098 pseudo LOC102029056 BTB/POZ domain-containing protein KCTD9 pseudogene NW_004955461 2163333 2164220 + 102029056 AGCD01048829 MODEL 8834737 ncrna LOC102015855 uncharacterized LOC102015855 NW_004955492 2416016 2425591 - 102015855 AGCD01060677;GBDF01208554;XR_264046 MODEL 8848689 protein-coding Pcdh9 protocadherin 9 INVOLVED IN forebrain development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN cell-cell contact zone (ortholog); glutamatergic synapse (ortholog); growth cone (ortholog) NW_004955404 38666480 39534211 + 102029695 AGCD01004260;AGCD01004261;AGCD01004262;AGCD01004263;AGCD01004264;AGCD01004265;AGCD01004266;AGCD01004267;AGCD01004268;AGCD01004269;AGCD01004270;AGCD01004271;AGCD01004272;AGCD01004273;AGCD01004274;AGCD01004275;GBBH01105470;XM_005374195;XM_005374196;XM_005374197;XM_005374198;XM_005374199 XP_005374252;XP_005374253;XP_005374254;XP_005374255;XP_005374256 MODEL 9015983 protein-coding LOC102030473 magnesium transporter NIPA2-like NW_004955533 269301 285321 - 102030473 AGCD01070312;XM_013507668 XP_013363122 MODEL 8793518 protein-coding Soat1 sterol O-acyltransferase 1 ENCODES a protein that exhibits cholesterol binding (ortholog); cholesterol O-acyltransferase activity (ortholog); fatty-acyl-CoA binding (ortholog); INVOLVED IN cholesterol efflux (ortholog); cholesterol homeostasis (ortholog); cholesterol metabolic process (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH aortic atherosclerosis (ortholog); atherosclerosis (ortholog); Chagas disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955406 18644351 18708666 + 102022462 AGCD01006051;AGCD01006052;AGCD01006053;AGCD01006054;AGCD01006055;AGCD01006056;AGCD01006057;GBBH01180582;GBDJ01300596;XM_013521162 XP_013376616 MODEL 8811905 protein-coding Qtrt2 queuine tRNA-ribosyltransferase accessory subunit 2 ENCODES a protein that exhibits enzyme-substrate adaptor activity (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN tRNA wobble guanine modification (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955427 14139024 14169402 + 102008752 AGCD01027267;GBDF01111812;XM_005386411 XP_005386468 MODEL 8733126 ncrna LOC102017748 uncharacterized LOC102017748 NW_004955409 7814743 7821735 - 102017748 AGCD01009366;AGCD01009367;GBDF01207876;XR_001232620;XR_259757 MODEL 8795766 protein-coding Rbm43 RNA binding motif protein 43 NW_004955440 16836877 16843414 - 102018986 AGCD01036533;GBBH01065800;XM_013517442 XP_013372896 MODEL 8909495 protein-coding Slc6a4 solute carrier family 6 member 4 ENCODES a protein that exhibits actin filament binding (ortholog); antiporter activity (ortholog); cocaine binding (ortholog); INVOLVED IN behavioral response to cocaine (ortholog); brain morphogenesis (ortholog); cellular response to cGMP (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH AIDS Dementia Complex (ortholog); alcohol dependence (ortholog); alcohol use disorder (ortholog); FOUND IN endomembrane system (ortholog); endosome membrane (ortholog); focal adhesion (ortholog) NW_004955481 3088440 3122421 + 102005469 AGCD01056893;AGCD01056894;GBDK01358674;XM_005402661;XM_005402662;XM_005402663;XM_005402664;XM_013503528 XP_005402718;XP_005402719;XP_005402720;XP_005402721;XP_013358982 MODEL 10083626 ncrna LOC106147134 uncharacterized LOC106147134 NW_004955408 290815 298054 - 106147134 AGCD01007915;GBBH01106671;XR_001231891 MODEL 8846785 protein-coding LOC102028686 nodal modulator 1 NW_004955442 926673 979718 + 102028686 AGCD01037430;GBBH01092707;XM_005391083;XM_013517953 XP_005391140;XP_013373407 MODEL 8929632 protein-coding Prss27 serine protease 27 FOUND IN plasma membrane (ortholog) NW_004955442 14636739 14656877 + 102019113 AGCD01037831;AGCD01037832;GBDF01127689;XM_005391411;XM_005391413;XM_005391415 XP_005391468;XP_005391470;XP_005391472 MODEL 9046474 pseudo LOC102003842 protein CASC4 pseudogene NW_004955459 21261 22548 - 102003842 AGCD01047923 MODEL 8907958 protein-coding Wdr59 WD repeat domain 59 INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to nutrient levels (ortholog); positive regulation of TORC1 signaling (ortholog); PARTICIPATES IN mTOR signaling pathway; FOUND IN GATOR2 complex (ortholog); lysosomal membrane (ortholog) NW_004955484 2576505 2668001 + 102024115 AGCD01058120;AGCD01058121;AGCD01058122;GBDF01195114;XM_005403454;XM_005403455 XP_005403511;XP_005403512 MODEL 39131510 protein-coding PRIMA1 proline rich membrane anchor 1 8856862 protein-coding LOC102010846 olfactory receptor 2W1-like NW_004955576 1239098 1240057 - 102010846 AGCD01075364;XM_005413951 XP_005414008 MODEL 8986160 protein-coding LOC102012845 NACHT, LRR and PYD domains-containing protein 1-like NW_004955467 10861527 10905757 - 102012845 AGCD01051587;GBCE01022349;XM_013522159;XM_013522160 XP_013377613;XP_013377614 MODEL 8786214 protein-coding Plekhg5 pleckstrin homology and RhoGEF domain containing G5 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN endothelial cell chemotaxis (ortholog); endothelial cell migration (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 14 (ortholog); autosomal recessive distal hereditary motor neuronopathy 4 (ortholog); Charcot-Marie-Tooth disease recessive intermediate C (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); endocytic vesicle (ortholog) NW_004955486 6099654 6121805 + 102010165 AGCD01059108;GBBH01085966;XM_005404088;XM_013504284;XM_013504285;XM_013504286;XM_013504288 XP_005404145;XP_013359738;XP_013359739;XP_013359740;XP_013359742 MODEL 8935205 pseudo LOC102008572 E3 ubiquitin-protein ligase RING2 pseudogene NW_004955439 2667966 2668976 - 102008572 AGCD01035656 MODEL 9024369 protein-coding Timm10b translocase of inner mitochondrial membrane 10B INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); PARTICIPATES IN carrier pathway of mitochondrial protein import; FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial intermembrane space chaperone complex (ortholog) NW_004955414 22214457 22217351 + 102023142 AGCD01015449;GBDK01146994;XM_005380148 XP_005380205 MODEL 8917357 protein-coding Ptgfrn prostaglandin F2 receptor inhibitor INVOLVED IN lipid droplet organization (ortholog); myoblast fusion involved in skeletal muscle regeneration (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955435 20046712 20092051 + 102004001 AGCD01033445;GBDJ01272892;XM_005389111 XP_005389168 MODEL 8908482 pseudo LOC102018893 putative dimethylaniline monooxygenase [N-oxide-forming] 6 NW_004955406 11808291 11826736 + 102018893 AGCD01005896;XM_005375459 MODEL 8920153 pseudo LOC102028038 cullin-2 pseudogene NW_004955581 996362 997379 - 102028038 AGCD01075705 MODEL 8815608 protein-coding Ppm1l protein phosphatase, Mg2+/Mn2+ dependent 1L ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN cell surface receptor protein serine/threonine kinase signaling pathway (ortholog); MAPK cascade (ortholog); ASSOCIATED WITH obesity (ortholog) NW_004955448 11265988 11548258 + 102006184 AGCD01041520;AGCD01041521;AGCD01041522;AGCD01041523;AGCD01041524;AGCD01041525;AGCD01041526;AGCD01041527;GBCE01057334;GBCE01057335;XM_005393125 XP_005393182 MODEL 8958354 protein-coding Trit1 tRNA isopentenyltransferase 1 ENCODES a protein that exhibits tRNA dimethylallyltransferase activity (ortholog); INVOLVED IN mitochondrial tRNA modification (ortholog); tRNA modification (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 35 (ortholog); generalized epilepsy (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955452 17330446 17378579 - 102029821 AGCD01044550;AGCD01044551;AGCD01044552;GBDK01277036;XM_005395267;XM_005395268;XM_013519693 XP_005395324;XP_005395325;XP_013375147 MODEL 8935287 pseudo LOC102009717 cyclin-C-like NW_004955416 11195941 11196968 + 102009717 AGCD01017180;XR_260457 MODEL 9027750 pseudo LOC102011675 BTB/POZ domain-containing protein KCTD3 pseudogene NW_004955422 13339184 13342304 + 102011675 AGCD01022821 MODEL 10174668 protein-coding LOC106148230 spidroin-1-like NW_004955418 5426276 5429328 + 106148230 AGCD01018843;GBDF01021237;XM_013512875 XP_013368329 MODEL 8739192 protein-coding LOC102024543 high affinity immunoglobulin gamma Fc receptor I-like NW_004955413 924533 950278 - 102024543 AGCD01013495;AGCD01013496;AGCD01013497;AGCD01013498;GBDK01121288;XM_005378716 XP_005378773 MODEL 8843810 protein-coding LOC102010459 potassium channel subfamily U member 1-like NW_004955463 12698574 12705738 + 102010459 AGCD01049856;AGCD01049857;GBBH01200395;XM_005398408 XP_005398465 MODEL 8839916 protein-coding LOC102011222 translation initiation factor IF-2-like NW_004955504 1462038 1467322 + 102011222 AGCD01064839;AGCD01064840;GBDI01357943;GBDK01076347;XM_013505915 XP_013361369 MODEL 8858247 protein-coding LOC102025985 T-cell surface glycoprotein CD1c3-like NW_004955462 1490616 1494592 - 102025985 AGCD01049124;GBBH01132147;GBDK01092910;XM_005398317;XM_013521351 XP_005398374;XP_013376805 MODEL 8854107 protein-coding Rgl1 ral guanine nucleotide dissociation stimulator like 1 NW_004955406 22419137 22670537 + 102027940 AGCD01006158;AGCD01006159;AGCD01006160;GBDF01090295;XM_005375043;XM_005375044;XM_005375045;XM_005375046 XP_005375100;XP_005375101;XP_005375102;XP_005375103 MODEL 39131480 protein-coding SMIM35 small integral membrane protein 35 39133252 snrna U4 U4 spliceosomal RNA 8788360 pseudo LOC102006710 protein C3orf33 pseudogene NW_004955437 718511 719164 - 102006710 AGCD01034156 MODEL 8816968 pseudo LOC102026348 GPN-loop GTPase 1 pseudogene NW_004955529 532916 534147 - 102026348 AGCD01069641 MODEL 8949215 protein-coding Rmi2 RecQ mediated genome instability 2 INVOLVED IN double-strand break repair via homologous recombination (ortholog); regulation of sister chromatid segregation (ortholog); resolution of DNA recombination intermediates (ortholog); FOUND IN nuclear speck (ortholog); RecQ family helicase-topoisomerase III complex (ortholog) NW_004955442 7262381 7266992 - 102029669 AGCD01037623;GBDJ01028580;XM_005391165 XP_005391222 MODEL 10275300 ncrna LOC106149972 uncharacterized LOC106149972 NW_004955458 4265470 4266042 + 106149972 AGCD01047395;GBDF01279215;XR_001236472 MODEL 8989873 protein-coding Ralgds ral guanine nucleotide dissociation stimulator ENCODES a protein that exhibits GTPase regulator activity (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); intellectual disability (ortholog); FOUND IN brush border (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955513 2386293 2405161 - 102006939 AGCD01066878;GBCE01096266;GBDF01128189;XM_005408411 XP_005408468 MODEL 8778156 protein-coding LOC102005607 uncharacterized protein C7orf34 homolog NW_004955494 875367 876635 + 102005607 AGCD01061387;GBDF01006174;XM_005405389;XM_005405390 XP_005405446;XP_005405447 MODEL 8963385 protein-coding Btn1a1 butyrophilin subfamily 1 member A1 NW_004955483 392749 409947 - 102012199 AGCD01057609;GBCB01025102;XM_005403280;XM_005403281;XM_005403282;XM_005403283;XM_005403284;XM_013503766 XP_005403337;XP_005403338;XP_005403339;XP_005403340;XP_005403341;XP_013359220 MODEL 8983212 protein-coding LOC102019320 mamu class II histocompatibility antigen, DR alpha chain ENCODES a protein that exhibits peptide antigen binding (ortholog); polysaccharide binding (ortholog); T cell receptor binding (ortholog); INVOLVED IN antigen processing and presentation of endogenous peptide antigen via MHC class II (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); antigen processing and presentation of peptide or polysaccharide antigen via MHC class II (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; ASSOCIATED WITH allergic disease (ortholog); asthma (ortholog); Asthma and Nasal Polyps (ortholog); FOUND IN autolysosome membrane (ortholog); cell surface (ortholog); early endosome membrane (ortholog) NW_004955437 1109735 1114742 + 102019320 AGCD01034190;GBBH01030587;XM_005389449 XP_005389506 MODEL 9007323 protein-coding Lipk lipase family member K NW_004955425 4215214 4247584 - 102021147 AGCD01025310;GBCC01021426;XM_005385864;XM_005385865;XM_005385866;XM_005385868;XM_013514918;XM_013514919 XP_005385921;XP_005385922;XP_005385923;XP_005385925;XP_013370372;XP_013370373 MODEL 9016062 protein-coding Sele selectin E ENCODES a protein that exhibits oligosaccharide binding (ortholog); phospholipase binding (ortholog); sialic acid binding (ortholog); INVOLVED IN actin filament-based process (ortholog); heterophilic cell-cell adhesion (ortholog); leukocyte cell-cell adhesion (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); allergic contact dermatitis (ortholog); aortic atherosclerosis (ortholog); FOUND IN caveola (ortholog); clathrin-coated pit (ortholog); cortical cytoskeleton (ortholog) NW_004955462 7564437 7575297 + 102011184 AGCD01049308;XM_013521360 XP_013376814 MODEL 8834181 protein-coding LOC102027346 zinc finger protein 709-like NW_004955546 354075 384102 - 102027346 AGCD01071967;AGCD01071968;AGCD01071969;AGCD01071970;GBDI01358246;XM_005411751;XM_013508419 XP_005411808;XP_013363873 MODEL 8983068 protein-coding Pdx1 pancreatic and duodenal homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); cell differentiation (ortholog); cellular response to acadesine (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH acute necrotizing pancreatitis (ortholog); cerebral infarction (ortholog); diabetes mellitus (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955497 7281886 7307969 + 102016397 AGCD01062664;AGCD01062665;XM_013505455 XP_013360909 MODEL 9036603 protein-coding LOC102030474 uncharacterized LOC102030474 NW_004955437 17664473 17677498 + 102030474 AGCD01034753;GBDK01430772;XM_013516723 XP_013372177 MODEL 8875475 protein-coding Wdr5b WD repeat domain 5B FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955427 21698766 21700390 - 102010390 AGCD01027454;GBCE01034152;XM_005386511 XP_005386568 MODEL 8906577 protein-coding Sf3b4 splicing factor 3b subunit 4 ENCODES a protein that exhibits splicing factor binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH cervical cancer (ortholog); genetic disease (ortholog); Hearing Loss (ortholog); FOUND IN nucleus (ortholog); precatalytic spliceosome (ortholog); spliceosomal complex (ortholog) NW_004955413 826190 830502 + 102021955 AGCD01013491;GBDF01082584;XM_005378708 XP_005378765 MODEL 8928098 pseudo LOC102017753 peptidyl-prolyl cis-trans isomerase G pseudogene NW_004955411 11900324 11902482 - 102017753 AGCD01011834 MODEL 8927828 protein-coding Ptgir prostaglandin I2 receptor INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); negative regulation of platelet-derived growth factor receptor signaling pathway (ortholog); negative regulation of smooth muscle cell proliferation (ortholog); PARTICIPATES IN eicosanoid signaling pathway; prostaglandin I2 signaling pathway; ASSOCIATED WITH aspirin-induced respiratory disease (ortholog); atrial fibrillation (ortholog); Experimental Arthritis (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955574 686156 690126 - 102028353 AGCD01075122;GBDK01305224;XM_005413837;XM_005413838;XM_013509573 XP_005413894;XP_005413895;XP_013365027 MODEL 8882801 protein-coding Slc6a5 solute carrier family 6 member 5 ENCODES a protein that exhibits glycine transmembrane transporter activity (ortholog); glycine:sodium symporter activity (ortholog); INVOLVED IN glycine import across plasma membrane (ortholog); glycine transport (ortholog); neurotransmitter reuptake (ortholog); ASSOCIATED WITH Apnea (ortholog); brain disease (ortholog); Cryopyrin-Associated Periodic Syndromes (ortholog); FOUND IN dense core granule (ortholog); endosome (ortholog); glycinergic synapse (ortholog) NW_004955476 1380869 1433005 + 102007333 AGCD01055205;GBDF01078637;XM_013502900 XP_013358354 MODEL 10069435 ncrna LOC106147135 uncharacterized LOC106147135 NW_004955521 4460280 4468467 + 106147135 AGCD01068262;GBDI01239940;XR_001231892 MODEL 8829883 pseudo LOC102011682 rho guanine nucleotide exchange factor 38-like NW_004955502 656842 673369 - 102011682 AGCD01064247 MODEL 8884753 protein-coding S100a4 S100 calcium binding protein A4 ENCODES a protein that exhibits actin binding (ortholog); calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Colonic Neoplasms (ortholog); intracranial vasospasm (ortholog); FOUND IN extracellular region (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955545 192236 194468 - 102012128 AGCD01071776;GBCE01002936;XM_005411410 XP_005411467 MODEL 8701549 pseudo LOC102003845 E3 ubiquitin-protein ligase XIAP pseudogene NW_004955462 10272846 10275300 + 102003845 AGCD01049360 MODEL 8800487 protein-coding Wdr6 WD repeat domain 6 ENCODES a protein that exhibits enzyme regulator activity (ortholog); enzyme-substrate adaptor activity (ortholog); insulin receptor substrate binding (ortholog); INVOLVED IN G1 to G0 transition (ortholog); negative regulation of autophagy (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH Dwarfism (ortholog); FOUND IN COP9 signalosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955532 1029857 1039020 + 102008347 AGCD01070161;AGCD01070162;GBCB01099321;XM_005410186;XM_013507579 XP_005410243;XP_013363033 MODEL 8863574 ncrna LOC102029057 uncharacterized LOC102029057 NW_004955462 5592040 5609342 - 102029057 AGCD01049260;GBDF01253079;XR_001236581;XR_001236582;XR_001236583;XR_001236584 MODEL 39132439 snorna SNORA70 Small nucleolar RNA SNORA70 8884388 protein-coding LOC102026349 adenylate kinase 2, mitochondrial-like NW_004955436 3573177 3573880 - 102026349 AGCD01033636;XM_013516592 XP_013372046 MODEL 8864105 pseudo LOC102015859 U6 snRNA-associated Sm-like protein LSm6 pseudogene NW_004955422 26409372 26409612 + 102015859 AGCD01023288 MODEL 8941506 protein-coding Primpol primase and DNA directed polymerase ENCODES a protein that exhibits chromatin binding (ortholog); DNA polymerase activity (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN error-prone translesion synthesis (ortholog); mitochondrial DNA repair (ortholog); mitochondrial DNA replication (ortholog); ASSOCIATED WITH Myopia 22, Autosomal Dominant (ortholog); FOUND IN chromosome (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955403 24278727 24307312 - 102004998 AGCD01002271;GBDF01017298;XM_005373485;XM_013513029;XM_013513031;XM_013513040;XM_013513046 XP_005373542;XP_013368483;XP_013368485;XP_013368494;XP_013368500 MODEL 9018561 pseudo LOC102007074 60S ribosomal protein L27a pseudogene NW_004955450 9968147 9968719 + 102007074 AGCD01042602 MODEL 9007790 protein-coding Btnl10 Butyrophilin-like protein 10 NW_004955581 62183 69040 + 102011066 AGCD01075656;GBBH01076877;XM_005414227 XP_005414284 MODEL 8757567 protein-coding R3hcc1 R3H domain and coiled-coil containing 1 NW_004955403 46482255 46502194 + 102017622 AGCD01002860;GBDF01003219;XM_005373697;XM_013513971 XP_005373754;XP_013369425 MODEL 408395152 protein-coding SLC1A5 solute carrier family 1 member 5 8856628 protein-coding Rbm44 RNA binding motif protein 44 ENCODES a protein that exhibits protein homodimerization activity (ortholog); FOUND IN cytoplasm (ortholog); intercellular bridge (ortholog) NW_004955542 2573648 2620240 - 102030570 AGCD01071526;AGCD01071527;GBDF01048408;XM_005411204;XM_005411205;XM_013508022 XP_005411261;XP_005411262;XP_013363476 MODEL 8768175 ncrna LOC102030476 uncharacterized LOC102030476 NW_004955541 2163005 2172030 - 102030476 AGCD01071403;AGCD01071404;AGCD01071405;GBDF01127686;XR_001232139 MODEL 9049342 protein-coding LOC102021829 HLA class I histocompatibility antigen, B-18 alpha chain-like NW_004955712 7998 9513 - 102021829 AGCD01078145;XM_013510181 XP_013365635 MODEL 8833959 pseudo LOC102017756 ADP-ribosylation factor 1-like NW_004955467 8516546 8517706 + 102017756 AGCD01051452 MODEL 8821678 protein-coding Enpp4 ectonucleotide pyrophosphatase/phosphodiesterase 4 ENCODES a protein that exhibits bis(5'-adenosyl)-triphosphatase activity (ortholog); INVOLVED IN positive regulation of blood coagulation (ortholog); purine ribonucleoside catabolic process (ortholog) NW_004955437 11169778 11187544 + 102029793 AGCD01034569;GBDF01046277;XM_005389840;XM_005389841;XM_005389842;XM_005389843;XM_005389845;XM_013516974 XP_005389897;XP_005389898;XP_005389899;XP_005389900;XP_005389902;XP_013372428 MODEL 8913678 ncrna LOC102023550 uncharacterized LOC102023550 NW_004955452 10816383 10890616 - 102023550 AGCD01044304;AGCD01044305;AGCD01044306;AGCD01044307;AGCD01044308;AGCD01044309;AGCD01044310;AGCD01044311;AGCD01044312;AGCD01044313;AGCD01044314;AGCD01044315;GBDF01047563;XR_001236053 MODEL 8882792 protein-coding LOC102006713 keratin, type II cuticular Hb1-like NW_004955547 2624360 2629144 + 102006713 AGCD01072287;GBDF01003670;XM_013508439 XP_013363893 MODEL 9001204 protein-coding LOC102025986 glutathione S-transferase A-like NW_004955411 5147568 5305083 + 102025986 AGCD01011600;AGCD01011601;AGCD01011602;AGCD01011603;AGCD01011604;AGCD01011605;AGCD01011606;AGCD01011607;AGCD01011608;AGCD01011609;AGCD01011610;AGCD01011611;AGCD01011612;AGCD01011613;AGCD01011614;AGCD01011615;AGCD01011616;AGCD01011617;AGCD01011618;AGCD01011619;AGCD01011620;AGCD01011621;AGCD01011622;AGCD01011623;AGCD01011624;AGCD01011625;AGCD01011626;AGCD01011627;XM_005377650;XM_005377651 XP_005377707;XP_005377708 MODEL 10124296 ncrna LOC106149973 uncharacterized LOC106149973 NW_004955458 10983507 10997983 - 106149973 AGCD01047711;XR_001236473 MODEL 10284678 ncrna LOC106147136 uncharacterized LOC106147136 NW_004955522 3748621 3757161 - 106147136 AGCD01068395;GBDK01158580;XR_001231897 MODEL 8737194 protein-coding LOC102008576 NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-like NW_004955546 1452766 1495831 + 102008576 AGCD01072068;AGCD01072069;GBBH01214822;GBDI01370020;XM_013508414 XP_013363868 MODEL 8786878 protein-coding Tppp2 tubulin polymerization promoting protein family member 2 ENCODES a protein that exhibits tubulin binding (ortholog); INVOLVED IN microtubule bundle formation (ortholog); regulation of flagellated sperm motility (ortholog); FOUND IN cytosol (ortholog); sperm flagellum (ortholog) NW_004955550 1779405 1785385 + 102005083 AGCD01072588;GBCE01168156;GBDI01105945;XM_013508575 XP_013364029 MODEL 8701115 protein-coding Soat2 sterol O-acyltransferase 2 ENCODES a protein that exhibits cholesterol binding (ortholog); cholesterol O-acyltransferase activity (ortholog); fatty-acyl-CoA binding (ortholog); INVOLVED IN cholesterol efflux (ortholog); cholesterol metabolic process (ortholog); cholesterol storage (ortholog); PARTICIPATES IN kidney failure pathway; ASSOCIATED WITH arteriosclerosis (ortholog); celiac disease (ortholog); cholelithiasis (ortholog); FOUND IN brush border (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955458 383123 394003 + 102012287 AGCD01047122;AGCD01047123;GBCQ01096818;XM_005397145;XM_005397147;XM_005397148;XM_005397150;XM_005397151;XM_013521027;XM_013521028 XP_005397202;XP_005397204;XP_005397205;XP_005397207;XP_005397208;XP_013376481;XP_013376482 MODEL 8782591 protein-coding LOC102003846 aldose reductase NW_004955410 33554985 33569352 + 102003846 AGCD01011372;AGCD01011373;GBCQ01005098;XM_005377536 XP_005377593 MODEL 8936504 protein-coding Lipm lipase family member M NW_004955425 4150780 4170912 - 102020139 AGCD01025310;GBCC01000396;XM_005385861 XP_005385918 MODEL 39131381 protein-coding SELE selectin E 10206402 pseudo LOC106148231 elongation factor 1-alpha 1-like NW_004955418 15282977 15286540 + 106148231 AGCD01019095 MODEL 9014651 ncrna LOC102009719 uncharacterized LOC102009719 NW_004955482 6560784 6566698 + 102009719 AGCD01057403;GBDF01126264;XR_001230965 MODEL 39131397 protein-coding PDX1 pancreatic and duodenal homeobox 1 8841217 pseudo LOC102010460 40S ribosomal protein S14 pseudogene NW_004955463 13024771 13025227 - 102010460 AGCD01049860 MODEL 8838861 protein-coding Ptgis prostaglandin I2 synthase ENCODES a protein that exhibits heme binding (ortholog); hydroperoxy icosatetraenoate dehydratase activity (ortholog); prostaglandin-I synthase activity (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); cellular response to estradiol stimulus (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH Arterial Occlusive Diseases (ortholog); atherosclerosis (ortholog); autism spectrum disorder (ortholog); FOUND IN caveola (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955445 8624228 8663385 + 102005315 AGCD01039608;AGCD01039609;GBCE01000913;XM_005392329 XP_005392386 MODEL 8932115 protein-coding LOC102028688 olfactory receptor 15 ENCODES a protein that exhibits odorant binding (ortholog); olfactory receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception (ortholog); detection of chemical stimulus involved in sensory perception of smell (ortholog); FOUND IN cell cortex (ortholog); membrane (ortholog) NW_004955442 14000372 14005737 - 102028688 AGCD01037800;XM_005391355;XM_013517701;XM_013517702 XP_005391412;XP_013373155;XP_013373156 MODEL 8992061 protein-coding Sobp sine oculis binding protein homolog ENCODES a protein that exhibits SUMO polymer binding (ortholog); INVOLVED IN cochlea development (ortholog); cognition (ortholog); inner ear morphogenesis (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Impaired intellectual development, anterior maxillary protrusion, and strabismus (ortholog); FOUND IN nucleus (ortholog) NW_004955411 32745029 32898570 + 102023568 AGCD01012336;AGCD01012337;AGCD01012338;AGCD01012339;GBCB01000312;XM_013510791 XP_013366245 MODEL 8922533 pseudo LOC102011225 olfactory receptor 1013-like NW_004955511 1812470 1813401 + 102011225 AGCD01066380 MODEL 8857598 protein-coding LOC102012851 late histone H2B.L4-like NW_004955413 862577 885893 - 102012851 AGCD01013492;AGCD01013493;GBDI01162044;XM_013511494 XP_013366948 MODEL 9005956 ncrna LOC102030478 uncharacterized LOC102030478 NW_004955440 16442122 16467958 + 102030478 AGCD01036518;GBDF01082706;XR_001235236;XR_001235237;XR_001235238;XR_001235239;XR_001235240 MODEL 8967189 protein-coding Rgl2 ral guanine nucleotide dissociation stimulator like 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN negative regulation of cardiac muscle cell apoptotic process (ortholog); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); regulation of Ral protein signal transduction (ortholog) NW_004955437 1851005 1857567 - 102003279 AGCD01034239;GBBH01030712;XM_005389484 XP_005389541 MODEL 8715218 protein-coding Rmnd1 required for meiotic nuclear division 1 homolog INVOLVED IN positive regulation of mitochondrial translation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); combined oxidative phosphorylation deficiency 11 (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955439 10151357 10193765 + 102029902 AGCD01035858;GBDF01252199;XM_005390579;XM_005390581 XP_005390636;XP_005390638 MODEL 9038065 protein-coding LOC102005611 bcl-2-like protein 13 NW_004955423 25019836 25046086 + 102005611 AGCD01024050;AGCD01024051;XM_013514366 XP_013369820 MODEL 9056314 protein-coding LOC102010850 cytochrome P450 1A1 ENCODES a protein that exhibits arachidonate monooxygenase activity (ortholog); demethylase activity (ortholog); enzyme binding (ortholog); INVOLVED IN 9-cis-retinoic acid biosynthetic process (ortholog); amine metabolic process (ortholog); camera-type eye development (ortholog); PARTICIPATES IN gefitinib pharmacokinetics pathway; phase I biotransformation pathway via cytochrome P450; tamoxifen pharmacokinetics pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Lung Injury (ortholog); acute lymphoblastic leukemia (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog); mitochondrial inner membrane (ortholog) NW_004955450 3183958 3189488 + 102010850 AGCD01042426;GBDK01432211;XM_005393546;XM_005393547 XP_005393603;XP_005393604 MODEL 8803593 protein-coding Plekhg6 pleckstrin homology and RhoGEF domain containing G6 ASSOCIATED WITH cystic fibrosis (ortholog); FOUND IN cell junction (ortholog); cleavage furrow (ortholog) NW_004955413 3969459 3982348 + 102012179 AGCD01013590;AGCD01013591;GBBH01193665;XM_005378757 XP_005378814 MODEL 8947893 protein-coding LOC102025991 putative olfactory receptor 8G3 pseudogene NW_004955412 24956591 24957488 + 102025991 AGCD01013132;AGCD01013133;XM_005378643 XP_005378700 MODEL 8872815 protein-coding Ppm1m protein phosphatase, Mg2+/Mn2+ dependent 1M ENCODES a protein that exhibits manganese ion binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN protein dephosphorylation (ortholog); FOUND IN nucleus (ortholog) NW_004955532 3854699 3858923 + 102010518 AGCD01070302;GBCB01040412;GBDK01008951;XM_005410373;XM_013507628 XP_005410430;XP_013363082 MODEL 9059477 protein-coding Trmo tRNA methyltransferase O ENCODES a protein that exhibits tRNA (L-threonylcarbamoyladenosine(37)-C2) methyltransferase activity (ortholog); INVOLVED IN tRNA methylation (ortholog) NW_004955419 27553040 27568417 + 102020012 AGCD01020441;GBCQ01059248;XM_013513222;XM_013513223 XP_013368676;XP_013368677 MODEL 39131576 protein-coding SMIM36 small integral membrane protein 36 8889519 protein-coding Prss33 serine protease 33 ENCODES a protein that exhibits serine-type peptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog) NW_004955442 14521485 14524632 - 102016204 AGCD01037824;GBDK01223259;XM_005391403 XP_005391460 MODEL 8890141 protein-coding Prkaa1 protein kinase AMP-activated catalytic subunit alpha 1 ENCODES a protein that exhibits [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity (ortholog); AMP-activated protein kinase activity (ortholog); ATP binding (ortholog); INVOLVED IN CAMKK-AMPK signaling cascade (ortholog); cellular response to calcium ion (ortholog); cellular response to ethanol (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); amenorrhea (ortholog); breast cancer (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); chromatin (ortholog) NW_004955426 25079718 25102090 - 102025600 AGCD01026701;GBDK01358699;XM_005386244 XP_005386301 MODEL 8756941 protein-coding Pcdha1 protocadherin alpha 1 ASSOCIATED WITH prostate cancer (ortholog); FOUND IN endoplasmic reticulum (ortholog); membrane (ortholog) NW_004955611 363566 396184 - 102019455 AGCD01077164;AGCD01077165;AGCD01077166;AGCD01077167;AGCD01077168;AGCD01077169;AGCD01077170;GBBH01112798;XM_013510125 XP_013365579 MODEL 8919973 protein-coding LOC102021830 keratin-associated protein 3-1 NW_004955451 15429424 15430011 - 102021830 AGCD01043607;XM_005394380 XP_005394437 MODEL 8915618 protein-coding LOC102018897 uncharacterized LOC102018897 NW_004955458 9971865 9973728 + 102018897 AGCD01047669;GBDF01150755;XM_005397436 XP_005397493 MODEL 8793311 protein-coding LOC102017758 apolipoprotein L3-like NW_004955413 22826454 22837555 - 102017758 AGCD01014317;GBBH01091386;XM_005379156 XP_005379213 MODEL 8957254 protein-coding LOC102011226 olfactory receptor 10AG1-like NW_004955511 918179 920370 - 102011226 AGCD01066346;XM_005408217 XP_005408274 MODEL 8972758 pseudo LOC102023553 G patch domain and KOW motifs-containing protein pseudogene NW_004955452 13842387 13843344 + 102023553 AGCD01044437 MODEL 9025535 protein-coding LOC102027356 leukocyte immunoglobulin-like receptor subfamily A member 5 NW_004955567 1690269 1705191 + 102027356 AGCD01074487;XM_013509233 XP_013364687 MODEL 8949750 protein-coding LOC102028040 lymphocyte antigen 75 NW_004955449 13702629 13833725 + 102028040 AGCD01042141;AGCD01042142;AGCD01042143;GBDI01324169;GBDI01324177;XM_013518695;XM_013518696 XP_013374149;XP_013374150 MODEL 8760235 ncrna LOC102026351 uncharacterized LOC102026351 NW_004955537 2929947 2934805 - 102026351 AGCD01070939;GBCB01101184;XR_264780 MODEL 8785101 pseudo LOC102010851 transmembrane protein 69 pseudogene NW_004955402 725985 734220 - 102010851 AGCD01000031 MODEL 10095735 ncrna LOC106147137 uncharacterized LOC106147137 NW_004955522 3720870 3734233 - 106147137 AGCD01068394;GBCQ01192751;XR_001231898 MODEL 8749713 protein-coding Wdr62 WD repeat domain 62 INVOLVED IN centriole replication (ortholog); cerebral cortex development (ortholog); mitotic spindle organization (ortholog); ASSOCIATED WITH autosomal recessive primary microcephaly (ortholog); complex cortical dysplasia with other brain malformations (ortholog); Dwarfism (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); nucleus (ortholog) NW_004955468 2504181 2545982 - 102011425 AGCD01051824;AGCD01051825;GBDF01003421;XM_013522434;XM_013522435;XM_013522436;XM_013522437 XP_013377888;XP_013377889;XP_013377890;XP_013377891 MODEL 8722973 protein-coding Plekhg7 pleckstrin homology and RhoGEF domain containing G7 NW_004955405 29703523 29760551 + 102022562 AGCD01005256;GBDJ01353997;XM_005374457;XM_005374459;XM_005374460;XM_013518255;XM_013518257;XM_013518258;XM_013518264;XM_013518269;XM_013518275 XP_005374514;XP_005374516;XP_005374517;XP_013373709;XP_013373711;XP_013373712;XP_013373718;XP_013373723;XP_013373729 MODEL 8738007 protein-coding LOC102008580 uncharacterized LOC102008580 NW_004955558 1650552 1710254 + 102008580 AGCD01073456;AGCD01073457;AGCD01073458;AGCD01073459;AGCD01073460;AGCD01073461;AGCD01073462;XM_013508849 XP_013364303 MODEL 8913259 protein-coding Tppp3 tubulin polymerization promoting protein family member 3 ENCODES a protein that exhibits tubulin binding (ortholog); INVOLVED IN decidualization (ortholog); embryo implantation (ortholog); microtubule bundle formation (ortholog); FOUND IN cytoplasm (ortholog); microtubule bundle (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955484 9246734 9250293 + 102005264 AGCD01058413;GBDK01012917;XM_005403658 XP_005403715 MODEL 8838639 protein-coding LOC102024546 zinc finger protein 420 NW_004955468 1759716 1837958 + 102024546 AGCD01051780;AGCD01051781;AGCD01051782;GBDF01277928;XM_005399882;XM_005399883;XM_013522305;XM_013522306;XM_013522307;XM_013522308;XM_013522309;XM_013522310;XM_013522311;XM_013522312;XM_013522313;XM_013522314;XM_013522315 XP_005399939;XP_005399940;XP_013377759;XP_013377760;XP_013377761;XP_013377762;XP_013377763;XP_013377764;XP_013377765;XP_013377766;XP_013377767;XP_013377768;XP_013377769 MODEL 9048784 protein-coding Btnl2 butyrophilin like 2 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN negative regulation of T cell receptor signaling pathway (ortholog); positive regulation of interleukin-2 production (ortholog); positive regulation of T cell proliferation (ortholog); ASSOCIATED WITH berylliosis (ortholog); coronary artery disease (ortholog); Graves' disease (ortholog); FOUND IN membrane (ortholog) NW_004955437 1084330 1101751 - 102018528 AGCD01034189;GBDJ01214554;XM_005389446;XM_005389447;XM_005389448 XP_005389503;XP_005389504;XP_005389505 MODEL 8947506 protein-coding Slc1a6 solute carrier family 1 member 6 ENCODES a protein that exhibits glutamate:sodium symporter activity (ortholog); high-affinity L-glutamate transmembrane transporter activity (ortholog); L-aspartate transmembrane transporter activity (ortholog); INVOLVED IN L-aspartate import across plasma membrane (ortholog); L-glutamate import across plasma membrane (ortholog); L-glutamate transmembrane transport (ortholog); FOUND IN glutamatergic synapse (ortholog); Golgi apparatus (ortholog); membrane (ortholog) NW_004955495 8270601 8314874 + 102014259 AGCD01062195;AGCD01062196;AGCD01062197;AGCD01062198;GBDF01224187;XM_005406101;XM_005406102;XM_005406103;XM_005406104 XP_005406158;XP_005406159;XP_005406160;XP_005406161 MODEL 8707896 protein-coding R3hcc1l R3H domain and coiled-coil containing 1 like FOUND IN exon-exon junction complex (ortholog) NW_004955507 4150389 4228412 + 102011345 AGCD01065640;AGCD01065641;AGCD01065642;GBDF01123772;XM_005407656;XM_005407657;XM_005407659;XM_005407660 XP_005407713;XP_005407714;XP_005407716;XP_005407717 MODEL 9014656 protein-coding LOC102009720 olfactory receptor 2AJ1-like NW_004955418 30036459 30037427 - 102009720 AGCD01019499;XM_005382364 XP_005382421 MODEL 8839537 protein-coding Selenbp1 selenium binding protein 1 ENCODES a protein that exhibits methanethiol oxidase activity (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Colorectal Neoplasms (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955588 703928 713941 - 102003505 AGCD01076118;GBDK01013351;XM_005414518;XM_013509926 XP_005414575;XP_013365380 MODEL 8821237 protein-coding LOC102011688 uncharacterized LOC102011688 NW_004955429 5818013 5828157 + 102011688 AGCD01028537;XM_013515350 XP_013370804 MODEL 8888053 protein-coding S100a5 S100 calcium binding protein A5 ENCODES a protein that exhibits calcium ion binding (ortholog); copper ion binding (ortholog); protein homodimerization activity (ortholog); ASSOCIATED WITH middle cerebral artery infarction (ortholog); FOUND IN neuronal cell body (ortholog); nucleus (ortholog) NW_004955545 187159 190399 - 102011149 AGCD01071776;GBBH01139402;XM_005411406;XM_005411407;XM_005411408;XM_005411409 XP_005411463;XP_005411464;XP_005411465;XP_005411466 MODEL 8843634 protein-coding Trmt1 tRNA methyltransferase 1 ENCODES a protein that exhibits tRNA (guanine(26)-N2)-dimethyltransferase activity (ortholog); INVOLVED IN tRNA N2-guanine methylation (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 68 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955415 32126630 32136770 - 102029616 AGCD01016710;AGCD01016711;GBDF01119256;XM_013512177 XP_013367631 MODEL 8986430 protein-coding Wdr64 WD repeat domain 64 NW_004955406 10317674 10439077 - 102017950 AGCD01005855;AGCD01005856;AGCD01005857;AGCD01005858;AGCD01005859;AGCD01005860;AGCD01005861;GBDF01159246;GBDF01159247;XM_013520508 XP_013375962 MODEL 9029730 ncrna LOC102030479 uncharacterized LOC102030479 NW_004955546 971975 975186 - 102030479 AGCD01072034;GBCQ01030827;XR_264886 MODEL 8731271 pseudo LOC102029060 60S ribosomal protein L12-like NW_004955465 11900158 11900739 - 102029060 AGCD01050537 MODEL 10214263 ncrna LOC106149974 uncharacterized LOC106149974 NW_004955458 1828045 1847679 + 106149974 AGCD01047206;GBCQ01121701;XR_001236474 MODEL 9046145 pseudo LOC102015860 fibroblast growth factor 4-like NW_004955422 14837357 14843688 - 102015860 AGCD01022870 MODEL 8974799 protein-coding Rmnd5a required for meiotic nuclear division 5 homolog A ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955424 983275 1034160 - 102015736 AGCD01024227;GBDI01072370;XM_005385391 XP_005385448 MODEL 39133257 snrna U4 U4 spliceosomal RNA 39131294 protein-coding PCDHA11 protocadherin alpha 11 8714476 protein-coding Slc6a6 solute carrier family 6 member 6 ENCODES a protein that exhibits alanine transmembrane transporter activity (ortholog); amino acid transmembrane transporter activity (ortholog); amino acid:sodium symporter activity (ortholog); INVOLVED IN alanine transport (ortholog); amino acid import across plasma membrane (ortholog); gamma-aminobutyric acid import (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); fundus dystrophy (ortholog); Hypertaurinuric Cardiomyopathy (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); dendrite (ortholog) NW_004955429 17097753 17130079 + 102004955 AGCD01028845;AGCD01028846;GBBH01032840;XM_005387062;XM_005387064 XP_005387119;XP_005387121 MODEL 8982064 ncrna LOC102026361 uncharacterized LOC102026361 NW_004955561 240060 241806 + 102026361 AGCD01073819;GBCB01034544;XR_265006 MODEL 8955262 protein-coding Timm13 translocase of inner mitochondrial membrane 13 INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space chaperone complex (ortholog); mitochondrion (ortholog) NW_004955495 5781024 5782300 + 102013516 AGCD01062029;GBDF01047197;XM_005405902 XP_005405959 MODEL 39131326 protein-coding PPM1N protein phosphatase, Mg2+/Mn2+ dependent 1N (putative) 8807808 pseudo LOC102024551 ADP-ribosylation factor-like protein 2-binding protein pseudogene NW_004955469 9911436 9913395 + 102024551 AGCD01052520 MODEL 8887229 ncrna LOC102019322 uncharacterized LOC102019322 NW_004955539 512748 523203 + 102019322 AGCD01071185;GBDF01010156;XR_264813 MODEL 8934086 protein-coding LOC102012852 olfactory receptor 52K1-like NW_004955414 19929257 19930261 - 102012852 AGCD01015343;XM_005380042 XP_005380099 MODEL 8885269 protein-coding Socs1 suppressor of cytokine signaling 1 ENCODES a protein that exhibits insulin-like growth factor receptor binding (ortholog); kinase inhibitor activity (ortholog); protein kinase binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); cell surface receptor signaling pathway via JAK-STAT (ortholog); cellular response to amino acid stimulus (ortholog); PARTICIPATES IN insulin signaling pathway; interleukin-12 signaling pathway; interleukin-2 signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); alcoholic hepatitis (ortholog); allergic contact dermatitis (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955442 7321337 7323109 + 102030005 AGCD01037623;GBCE01077934;XM_005391166 XP_005391223 MODEL 9034606 ncrna LOC102011689 uncharacterized LOC102011689 NW_004955511 5972095 5975480 + 102011689 AGCD01066594;XR_264436 MODEL 8883672 protein-coding LOC102005616 cytochrome P450 2C18-like NW_004955507 1041847 1146933 + 102005616 AGCD01065501;AGCD01065502;AGCD01065503;AGCD01065504;AGCD01065505;AGCD01065506;AGCD01065507;AGCD01065508;AGCD01065509;AGCD01065510;AGCD01065511;AGCD01065512;AGCD01065513;AGCD01065514;AGCD01065515;AGCD01065516;GBDF01111538;XM_013506232 XP_013361686 MODEL 8708247 protein-coding Rgl3 ral guanine nucleotide dissociation stimulator like 3 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog) NW_004955495 2304820 2319171 - 102029874 AGCD01061764;AGCD01061765;AGCD01061766;GBCE01074618;XM_013505110 XP_013360564 MODEL 8777407 protein-coding Sf3b5 splicing factor 3b subunit 5 ENCODES a protein that exhibits RNA binding (ortholog); splicing factor binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN nucleoplasm (ortholog); nucleus (ortholog); precatalytic spliceosome (ortholog) NW_004955436 16380412 16381373 + 102004851 AGCD01033915;GBBH01031902;XM_005389240 XP_005389297 MODEL 8949303 protein-coding LOC102007080 uncharacterized LOC102007080 NW_004955452 2394438 2439074 + 102007080 AGCD01043895;GBDF01015522;XM_005394736;XM_005394737;XR_001236123 XP_005394793;XP_005394794 MODEL 8942011 pseudo LOC102027358 uncharacterized LOC102027358 NW_004955445 8573145 8579649 - 102027358 AGCD01039604;AGCD01039605 MODEL 9018318 protein-coding Trmt10a tRNA methyltransferase 10A ENCODES a protein that exhibits tRNA (guanosine(9)-N1)-methyltransferase activity (ortholog); tRNA binding (ortholog); INVOLVED IN magnesium ion homeostasis (ortholog); tRNA methylation (ortholog); tRNA N1-guanine methylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Microcephaly, Short Stature, and Impaired Glucose Metabolism 1 (ortholog); Nervous System Malformations (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955496 8021747 8037562 + 102023493 AGCD01062387;GBDI01279046;XM_005406269;XM_005406270 XP_005406326;XP_005406327 MODEL 8790883 protein-coding LOC102025994 olfactory receptor 10T2-like NW_004955468 10316621 10317565 - 102025994 AGCD01052075;XM_005400151 XP_005400208 MODEL 39133163 snrna U4 U4 spliceosomal RNA 9027641 protein-coding Ralgps1 Ral GEF with PH domain and SH3 binding motif 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN regulation of Ral protein signal transduction (ortholog); ASSOCIATED WITH urinary bladder cancer (ortholog) NW_004955419 1334627 1593828 - 102007341 AGCD01019647;AGCD01019648;AGCD01019649;AGCD01019650;AGCD01019651;GBDJ01260608;XM_005382439;XM_005382440;XM_005382441;XM_005382442;XM_005382443;XM_005382444;XM_005382445;XM_005382446;XM_013513184;XM_013513185 XP_005382496;XP_005382497;XP_005382498;XP_005382499;XP_005382500;XP_005382501;XP_005382502;XP_005382503;XP_013368638;XP_013368639 MODEL 8827207 ncrna LOC102010852 uncharacterized LOC102010852 NW_004955450 14836986 14845311 - 102010852 AGCD01042764;GBDF01009911;XR_262554;XR_262555 MODEL 8985295 protein-coding Wdr7 WD repeat domain 7 INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); FOUND IN synaptic vesicle (ortholog) NW_004955402 41071895 41437717 + 102004341 AGCD01001008;AGCD01001009;AGCD01001010;AGCD01001011;AGCD01001012;AGCD01001013;AGCD01001014;AGCD01001015;GBDF01080343;XM_013510978;XM_013510979 XP_013366432;XP_013366433 MODEL 8797383 protein-coding LOC102003847 NADH-cytochrome b5 reductase-like NW_004955464 5065935 5087968 + 102003847 AGCD01049998;AGCD01049999;GBDJ01349008;XM_005398530;XM_005398531;XM_013521665 XP_005398587;XP_005398588;XP_013377119 MODEL 39131426 protein-coding SMIM39 small integral membrane protein 39 8920367 protein-coding Ptgr1 prostaglandin reductase 1 ENCODES a protein that exhibits 13-lipoxin reductase activity (ortholog); 15-oxoprostaglandin 13-reductase [NAD(P)+] activity (ortholog); 2-alkenal reductase (NADPH) activity (ortholog); INVOLVED IN leukotriene B4 metabolic process (ortholog); lipoxin A4 metabolic process (ortholog); negative regulation of positive chemotaxis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Experimental Liver Neoplasms (ortholog); hypertension (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955419 15708456 15738774 + 102009949 AGCD01020087;AGCD01020088;AGCD01020089;GBDK01361003;XM_005382721;XM_005382722 XP_005382778;XP_005382779 MODEL 39132446 snorna SNORA70 Small nucleolar RNA SNORA70 8976668 protein-coding Enpp5 ectonucleotide pyrophosphatase/phosphodiesterase family member 5 ENCODES a protein that exhibits NAD+ diphosphatase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN cell communication (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Prostatic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955437 11195846 11204000 - 102003483 AGCD01034569;GBDF01153945;XM_005389846 XP_005389903 MODEL 8786836 ncrna LOC102028695 uncharacterized LOC102028695 NW_004955568 20971 29068 - 102028695 AGCD01074499;GBDF01089433;XR_265037 MODEL 8878648 protein-coding LOC102009721 chromosome unknown open reading frame, human C6orf62 NW_004955483 2346246 2358156 + 102009721 AGCD01057674;AGCD01057675;GBDF01209925;XM_005403364;XM_005403365 XP_005403421;XP_005403422 MODEL 9029933 protein-coding Ppm1n protein phosphatase, Mg2+/Mn2+ dependent 1N (putative) NW_004955574 11728 16786 + 102012702 AGCD01075077;GBDF01178017;XM_013509550;XM_013509551;XM_013509553;XM_013509554;XM_013509555 XP_013365004;XP_013365005;XP_013365007;XP_013365008;XP_013365009 MODEL 8702555 protein-coding Prkaa2 protein kinase AMP-activated catalytic subunit alpha 2 ENCODES a protein that exhibits [hydroxymethylglutaryl-CoA reductase (NADPH)] kinase activity (ortholog); AMP-activated protein kinase activity (ortholog); ATP binding (ortholog); INVOLVED IN adiponectin-activated signaling pathway (ortholog); cellular response to calcium ion (ortholog); cellular response to glucose starvation (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Cardiac Fibrosis (ortholog); Cardiomegaly (ortholog); cardiomyopathy (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); cytoplasm (ortholog) NW_004955464 2996608 3062197 - 102021219 AGCD01049967;AGCD01049968;AGCD01049969;GBCB01001848;XM_005398501;XM_013521596 XP_005398558;XP_013377050 MODEL 10244369 pseudo LOC106148232 zinc finger CCCH domain-containing protein 15 pseudogene NW_004955418 28037586 28038093 - 106148232 AGCD01019426 MODEL 8997769 ncrna LOC102028041 uncharacterized LOC102028041 NW_004955402 48041349 48051001 - 102028041 AGCD01001197;GBDF01262283;XR_259100 MODEL 8913532 protein-coding Rbm46 RNA binding motif protein 46 ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN cell cycle switching, mitotic to meiotic cell cycle (ortholog); female meiotic nuclear division (ortholog); male meiotic nuclear division (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955471 12096400 12167536 - 102016372 AGCD01053272;AGCD01053273;AGCD01053274;GBDF01049866;XM_013522862 XP_013378316 MODEL 9015286 protein-coding Wdr70 WD repeat domain 70 ENCODES a protein that exhibits enzyme binding (ortholog); FOUND IN spliceosomal complex (ortholog); U2-type catalytic step 1 spliceosome (ortholog) NW_004955426 22062872 22344596 + 102016728 AGCD01026604;AGCD01026605;AGCD01026606;AGCD01026607;AGCD01026608;AGCD01026609;AGCD01026610;AGCD01026611;AGCD01026612;AGCD01026613;AGCD01026614;AGCD01026615;AGCD01026616;GBDF01125379;XM_013514960;XM_013514961 XP_013370414;XP_013370415 MODEL 8789403 pseudo LOC102017760 ribosome production factor 2 homolog pseudogene NW_004955414 220864 222594 + 102017760 AGCD01014711 MODEL 8777212 pseudo LOC102021831 bromodomain-containing protein 7-like NW_004955403 338651 341525 + 102021831 AGCD01001689 MODEL 10063798 ncrna LOC106149975 uncharacterized LOC106149975 NW_004955458 1973856 1978190 - 106149975 AGCD01047209;GBCQ01057482;XR_001236475 MODEL 10341822 ncrna LOC106147138 uncharacterized LOC106147138 NW_004955522 2709989 2713971 + 106147138 AGCD01068377;GBDF01144333;XR_001231899 MODEL 8799856 pseudo LOC102008582 adiponectin receptor protein 1 pseudogene NW_004955446 6108606 6109553 - 102008582 AGCD01040087 MODEL 9016095 ncrna LOC102011691 uncharacterized LOC102011691 NW_004955432 22073703 22077752 + 102011691 AGCD01031246;GBDF01194467;XR_001234645 MODEL 8700975 protein-coding LOC102005618 UPF0061 protein ETA_18310-like NW_004955429 2822671 2866918 + 102005618 AGCD01028439;AGCD01028440;AGCD01028441;AGCD01028442;AGCD01028443;GBBH01006669;GBCQ01067969;XM_005386894 XP_005386951 MODEL 8916502 protein-coding LOC102027359 acyl-protein thioesterase 1-like NW_004955571 1595554 1596103 - 102027359 AGCD01074887;XM_013509438 XP_013364892 MODEL 8768556 protein-coding Slc6a7 solute carrier family 6 member 7 ENCODES a protein that exhibits L-proline transmembrane transporter activity (ortholog); proline:sodium symporter activity (ortholog); INVOLVED IN proline transmembrane transport (ortholog); proline transport (ortholog); protein catabolic process (ortholog); FOUND IN glutamatergic synapse (ortholog); presynaptic membrane (ortholog); Schaffer collateral - CA1 synapse (ortholog) NW_004955415 4314090 4332659 - 102017863 AGCD01015968;GBDJ01406870;XM_005380583;XM_005380584 XP_005380640;XP_005380641 MODEL 8987982 ncrna LOC102026363 uncharacterized LOC102026363 NW_004955445 7874378 7877666 + 102026363 AGCD01039555;GBBH01211253;XR_001235552;XR_001235553;XR_001235554 MODEL 8805272 pseudo LOC102018898 60S ribosomal protein L21 pseudogene NW_004955458 2628825 2629154 - 102018898 AGCD01047240;XM_005397497 MODEL 8708810 protein-coding LOC102024553 olfactory receptor 52E1-like NW_004955414 20797441 20798379 + 102024553 AGCD01015389;XM_005380068 XP_005380125 MODEL 9064412 ncrna LOC102011229 uncharacterized LOC102011229 NW_004955515 241 57618 - 102011229 AGCD01067170;AGCD01067171;AGCD01067172;AGCD01067173;AGCD01067174;AGCD01067175;AGCD01067176;AGCD01067177;AGCD01067178;AGCD01067179;AGCD01067180;AGCD01067181;GBCE01018606;XR_264517 MODEL 8929792 pseudo LOC102029061 putative vomeronasal receptor-like protein 4 NW_004955465 12961954 12962789 + 102029061 AGCD01050573;XM_005399000 MODEL 8759327 protein-coding LOC102023555 zinc finger protein 654 NW_004955407 5356497 5435908 - 102023555 AGCD01006914;GBDK01429984;XM_005375530;XM_005375531;XM_005375532;XM_005375534 XP_005375587;XP_005375588;XP_005375589;XP_005375591 MODEL 8770314 pseudo LOC102010465 acyl carrier protein, mitochondrial pseudogene NW_004955467 7728117 7728770 - 102010465 AGCD01051438;XM_005399383 MODEL 9033989 protein-coding LOC102015862 olfactory receptor 1078-like NW_004955495 8410886 8411842 + 102015862 AGCD01062205;XM_005406107 XP_005406164 MODEL 8914971 protein-coding Prss35 serine protease 35 ASSOCIATED WITH Hepatomegaly (ortholog) NW_004955411 11163543 11164689 + 102015820 AGCD01011808;GBCQ01076266;XM_005377932 XP_005377989 MODEL 8757153 protein-coding Socs2 suppressor of cytokine signaling 2 ENCODES a protein that exhibits growth hormone receptor binding (ortholog); insulin-like growth factor receptor binding (ortholog); phosphorylation-dependent protein binding (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); growth hormone receptor signaling pathway (ortholog); intracellular signal transduction (ortholog); PARTICIPATES IN interleukin-2 signaling pathway; ASSOCIATED WITH allergic contact dermatitis (ortholog); Breast Neoplasms (ortholog); ductal carcinoma in situ (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog) NW_004955405 30349956 30623849 + 102026937 AGCD01005272;AGCD01005273;AGCD01005274;AGCD01005275;AGCD01005276;GBDI01171449;XM_005374469;XM_005374471;XM_005374472;XM_013518322;XM_013518324;XM_013518330;XM_013518331;XM_013518336;XM_013518338;XM_013518343;XM_013518347;XM_013518351;XM_013518360;XM_013518369;XM_013518373;XM_013518380;XR_001235628;XR_001235629 XP_005374526;XP_005374528;XP_005374529;XP_013373776;XP_013373778;XP_013373784;XP_013373785;XP_013373790;XP_013373792;XP_013373797;XP_013373801;XP_013373805;XP_013373814;XP_013373823;XP_013373827;XP_013373834 MODEL 8901865 protein-coding Plekhh1 pleckstrin homology, MyTH4 and FERM domain containing H1 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955466 2616627 2653804 - 102014029 AGCD01050750;AGCD01050751;GBDJ01316571;XM_013521892 XP_013377346 MODEL 8786325 protein-coding Tpr translocated promoter region, nuclear basket protein ENCODES a protein that exhibits chromatin binding (ortholog); dynein complex binding (ortholog); heat shock protein binding (ortholog); INVOLVED IN cellular response to heat (ortholog); cellular response to interferon-alpha (ortholog); mitotic spindle assembly checkpoint signaling (ortholog); ASSOCIATED WITH Autosomal Recessive Intellectual Developmental Disorder 79 (ortholog); intellectual disability (ortholog); Thyroid Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic dynein complex (ortholog); kinetochore (ortholog) NW_004955406 24742525 24805989 - 102011731 AGCD01006207;GBBH01166944;XM_005375082;XM_005375083 XP_005375139;XP_005375140 MODEL 8858932 protein-coding Sf3b6 splicing factor 3b subunit 6 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN blastocyst formation (ortholog); mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN nucleoplasm (ortholog); nucleus (ortholog); precatalytic spliceosome (ortholog) NW_004955469 6275894 6286908 - 102024444 AGCD01052376;AGCD01052377;GBCE01001807;XM_005400375 XP_005400432 MODEL 8841865 pseudo LOC102028043 ras-related C3 botulinum toxin substrate 1-like NW_004955402 34576757 34577472 - 102028043 AGCD01000866 MODEL 9022984 protein-coding Timm17a translocase of inner mitochondrial membrane 17A ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN positive regulation of protein processing (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); TIM23 mitochondrial import inner membrane translocase complex (ortholog) NW_004955406 38020886 38031651 + 102020305 AGCD01006582;GBDF01003865;XM_005375197 XP_005375254 MODEL 8901851 pseudo LOC102011694 casein kinase I NW_004955434 9624730 9625478 - 102011694 AGCD01032306;XR_261649 MODEL 9048400 protein-coding Trmt10b tRNA methyltransferase 10B ENCODES a protein that exhibits tRNA (guanosine(9)-N1)-methyltransferase activity (ortholog); FOUND IN cytosol (ortholog) NW_004955419 28693509 28720006 - 102004072 AGCD01020473;GBDI01353475;XM_005382868;XM_005382869;XM_005382870;XM_005382871;XM_005382872;XM_013513181;XM_013513182 XP_005382925;XP_005382926;XP_005382927;XP_005382928;XP_005382929;XP_013368635;XP_013368636 MODEL 9055052 protein-coding Slc1a7 solute carrier family 1 member 7 ENCODES a protein that exhibits extracellularly glutamate-gated chloride channel activity (ortholog); glutamate:sodium symporter activity (ortholog); L-glutamate transmembrane transporter activity (ortholog); INVOLVED IN chloride transmembrane transport (ortholog); L-glutamate transmembrane transport (ortholog); monoatomic anion transmembrane transport (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN axon terminus (ortholog); glutamatergic synapse (ortholog); photoreceptor cell terminal bouton (ortholog) NW_004955464 6032629 6069483 + 102013395 AGCD01050017;GBBH01023325;XM_005398562 XP_005398619 MODEL 8865998 ncrna LOC102021832 uncharacterized LOC102021832 NW_004955404 13372937 13378332 - 102021832 AGCD01003484;GBDF01277117;XR_259308 MODEL 8905729 protein-coding LOC102008583 olfactory receptor 2J3-like NW_004955576 1306942 1307865 + 102008583 AGCD01075370;XM_005413944 XP_005414001 MODEL 39132455 snorna SNORA70 Small nucleolar RNA SNORA70 8965331 ncrna LOC102012854 uncharacterized LOC102012854 NW_004955471 10905684 10911425 - 102012854 AGCD01053235;GBDF01112987;XR_263533 MODEL 8857193 protein-coding Ptgr2 prostaglandin reductase 2 ENCODES a protein that exhibits 15-oxoprostaglandin 13-reductase [NAD(P)+] activity (ortholog); zinc ion binding (ortholog); INVOLVED IN prostaglandin metabolic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog) NW_004955523 1519767 1549998 - 102024499 AGCD01068523;AGCD01068524;AGCD01068525;GBCQ01000257;XM_005409413 XP_005409470 MODEL 8712953 protein-coding Lipn lipase family member N ASSOCIATED WITH autosomal recessive congenital ichthyosis 8 (ortholog) NW_004955425 4187537 4205066 - 102020818 AGCD01025310;GBDK01267087;XM_005385863;XM_013514915 XP_005385920;XP_013370369 MODEL 8807361 protein-coding Enpp6 ectonucleotide pyrophosphatase/phosphodiesterase 6 ENCODES a protein that exhibits glycerophosphocholine cholinephosphodiesterase activity (ortholog); glycerophosphodiester phosphodiesterase activity (ortholog); phosphoric diester hydrolase activity (ortholog); INVOLVED IN choline metabolic process (ortholog); lipid metabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog) NW_004955403 24528644 24788878 + 102007491 AGCD01002274;AGCD01002275;AGCD01002276;AGCD01002277;GBBH01100140;XM_005373495;XM_013513092;XM_013513095 XP_005373552;XP_013368546;XP_013368549 MODEL 8989790 protein-coding LOC102028698 E3 ubiquitin-protein ligase RLIM-like NW_004955571 1596804 1605350 - 102028698 AGCD01074887;GBDK01061491;XM_005413647 XP_005413704 MODEL 8911290 protein-coding Rmnd5b required for meiotic nuclear division 5 homolog B ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog) NW_004955408 2095150 2107394 - 102012160 AGCD01007991;GBCQ01095814;XM_005376040;XM_013508101 XP_005376097;XP_013363555 MODEL 10357193 pseudo LOC102026366 Ig heavy chain V-III region 23-like NW_004955569 158289 164350 + 102026366 AGCD01074564 MODEL 9028373 protein-coding Rgma repulsive guidance molecule BMP co-receptor a ENCODES a protein that exhibits coreceptor activity (ortholog); signaling receptor binding (ortholog); transferrin receptor binding (ortholog); INVOLVED IN BMP signaling pathway (ortholog); negative regulation of axon regeneration (ortholog); negative regulation of collateral sprouting (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH middle cerebral artery infarction (ortholog); multiple sclerosis (ortholog); Penetrating Eye Injuries (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum (ortholog) NW_004955416 21221023 21261831 - 102019388 AGCD01017498;AGCD01017499;AGCD01017500;GBCB01024629;GBDI01174076;XM_005381602 XP_005381659 MODEL 8964005 pseudo LOC102007082 plastin-3 pseudogene NW_004955452 11705919 11707877 + 102007082 AGCD01044343 MODEL 8957402 protein-coding LOC102017764 olfactory receptor 51E2 NW_004955414 20281445 20282910 - 102017764 AGCD01015367;XM_005380055 XP_005380112 MODEL 9046707 protein-coding Btnl9 butyrophilin like 9 NW_004955530 263915 284368 - 102011359 AGCD01069836;AGCD01069837;AGCD01069838;GBDI01324980;XM_005410120;XM_013507547 XP_005410177;XP_013363001 MODEL 9047452 ncrna LOC102010853 uncharacterized LOC102010853 NW_004955403 10441158 10452838 + 102010853 AGCD01001921;XR_259168 MODEL 8987502 protein-coding R3hdm1 R3H domain containing 1 NW_004955440 2908721 3076522 + 102008573 AGCD01036228;AGCD01036229;AGCD01036230;AGCD01036231;GBDF01053670;XM_013517471;XM_013517472;XM_013517473;XM_013517474;XM_013517475;XM_013517476;XM_013517477;XM_013517478;XM_013517479 XP_013372925;XP_013372926;XP_013372927;XP_013372928;XP_013372929;XP_013372930;XP_013372931;XP_013372932;XP_013372933 MODEL 10089208 ncrna LOC106147139 uncharacterized LOC106147139 NW_004955408 6243631 6264305 + 106147139 AGCD01008169;AGCD01008170;XR_001231901 MODEL 8896918 pseudo LOC102030484 sodium/hydrogen exchanger 6 pseudogene NW_004955558 625595 626475 + 102030484 AGCD01073378 MODEL 8735215 protein-coding LOC102019324 tubulin beta-3 chain NW_004955541 3390452 3401774 + 102019324 AGCD01071442;AGCD01071443;GBBH01225915;XM_005411071 XP_005411128 MODEL 8941664 protein-coding Prkab1 protein kinase AMP-activated non-catalytic subunit beta 1 ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); nail development (ortholog); positive regulation of cold-induced thermogenesis (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH anuria (ortholog); Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN nucleotide-activated protein kinase complex (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955455 11877407 11889987 - 102016235 AGCD01046021;GBCB01038378;XM_005396524;XM_005396525 XP_005396581;XP_005396582 MODEL 9060906 protein-coding Smim4 small integral membrane protein 4 ENCODES a protein that exhibits mitochondrial ribosome binding (ortholog); INVOLVED IN mitochondrial respiratory chain complex III assembly (ortholog); mitochondrial respiratory chain complex IV assembly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004956313 1988 5240 + 102016773 AGCD01079416;GBDI01135702;XM_005415191 XP_005415248 MODEL 8719582 protein-coding LOC102027360 sulfotransferase 1 family member D1 NW_004955447 2990990 3016299 + 102027360 AGCD01040570;AGCD01040571;GBBH01215647;XM_005392791 XP_005392848 MODEL 8862503 protein-coding Pcdhac1 protocadherin alpha subfamily C, 1 NW_004955611 229711 242740 - 102017525 AGCD01077153;AGCD01077154;XM_005415307 XP_005415364 MODEL 39132467 snorna SNORA70 Small nucleolar RNA SNORA70 8864704 pseudo LOC102006714 prostaglandin E synthase 3 pseudogene NW_004955441 1043090 1044707 - 102006714 AGCD01036746 MODEL 8726987 pseudo LOC102023558 elongation factor 1-alpha 1 pseudogene NW_004955457 3190550 3192322 + 102023558 AGCD01046765 MODEL 9022603 pseudo LOC102029067 BAG family molecular chaperone regulator 2 pseudogene NW_004955413 9680139 9681002 - 102029067 AGCD01013909 MODEL 39133191 snrna U4 U4 spliceosomal RNA 9033046 protein-coding LOC102010472 olfactory receptor 688 NW_004955414 21882234 21901979 + 102010472 AGCD01015436;XM_005380504 XP_005380561 MODEL 9022295 protein-coding Prss36 serine protease 36 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); FOUND IN cytoplasm (ortholog) NW_004955493 7979080 7985028 - 102020813 AGCD01061245;AGCD01061246;AGCD01061247;GBBH01102280;GBBH01102285;XM_013504884 XP_013360338 MODEL 8837161 protein-coding Ralgps2 Ral GEF with PH domain and SH3 binding motif 2 NW_004955406 18161587 18267737 + 102026072 AGCD01006023;AGCD01006024;AGCD01006025;GBDK01430642;GBDK01430645;XM_005374939 XP_005374996 MODEL 8932881 protein-coding Plekhh2 pleckstrin homology, MyTH4 and FERM domain containing H2 ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN negative regulation of actin filament depolymerization (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cortical actin cytoskeleton (ortholog); cytoplasm (ortholog); lamellipodium (ortholog) NW_004955441 10818982 10921224 + 102025179 AGCD01037094;AGCD01037095;GBDF01083557;XM_005390924;XM_005390925;XM_005390927;XM_005390928;XM_005390929;XM_005390930;XM_005390931;XM_005390932;XM_005390933;XM_013517541;XR_262069 XP_005390981;XP_005390982;XP_005390984;XP_005390985;XP_005390986;XP_005390987;XP_005390988;XP_005390989;XP_005390990;XP_013372995 MODEL 8798465 protein-coding Sfi1 SFI1 centrin binding protein ENCODES a protein that exhibits phosphatase binding (ortholog); FOUND IN centriole (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955455 5667105 5744878 + 102012729 AGCD01045746;AGCD01045747;AGCD01045748;AGCD01045749;AGCD01045750;AGCD01045751;GBDK01319767;XM_005396332;XM_013520407;XM_013520408;XM_013520409;XM_013520410;XM_013520412;XM_013520413;XM_013520414;XM_013520415;XM_013520416;XM_013520417 XP_005396389;XP_013375861;XP_013375862;XP_013375863;XP_013375864;XP_013375866;XP_013375867;XP_013375868;XP_013375869;XP_013375870;XP_013375871 MODEL 8863979 protein-coding LOC102011696 butyrophilin-like protein 8 NW_004955530 347486 352064 - 102011696 AGCD01069846;GBDF01142616;XM_013507548 XP_013363002 MODEL 8727212 protein-coding Pdxdc1 pyridoxal dependent decarboxylase domain containing 1 ASSOCIATED WITH renal cell carcinoma (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955442 187983 238586 - 102029673 AGCD01037414;AGCD01037415;AGCD01037416;GBBH01063606;GBDJ01382967;XM_005391842 XP_005391899 MODEL 9055588 protein-coding Ppme1 protein phosphatase methylesterase 1 ENCODES a protein that exhibits lncRNA binding (ortholog); protein kinase binding (ortholog); protein methylesterase activity (ortholog); INVOLVED IN protein phosphorylation (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog) NW_004955414 17384695 17444269 - 102009272 AGCD01015241;GBDK01143985;XM_005379925 XP_005379982 MODEL 8835305 protein-coding LOC102009725 sperm motility kinase Z-like NW_004955421 18237422 18307124 + 102009725 AGCD01022039;AGCD01022040;AGCD01022041;AGCD01022042;GBBH01067465;XM_005383799;XM_005383800;XM_013513643;XR_001233830 XP_005383856;XP_005383857;XP_013369097 MODEL 8791456 pseudo LOC102024554 integrator complex subunit 10 pseudogene NW_004955470 2171427 2172046 - 102024554 AGCD01052673 MODEL 8791097 pseudo LOC102011231 heterogeneous nuclear ribonucleoprotein F-like NW_004955516 4862856 4863984 - 102011231 AGCD01067538 MODEL 8788461 protein-coding LOC102012855 vomeronasal type-1 receptor 90-like NW_004955414 15022049 15022963 - 102012855 AGCD01015170;XM_005380442 XP_005380499 MODEL 10331628 ncrna LOC106149976 uncharacterized LOC106149976 NW_004955458 4823190 4826267 - 106149976 AGCD01047441;XR_001236476 MODEL 9013418 ncrna LOC102015864 uncharacterized LOC102015864 NW_004955425 13450137 13458459 + 102015864 AGCD01025536;GBDJ01355455;XR_261139 MODEL 8867808 ncrna LOC102003849 uncharacterized LOC102003849 NW_004955412 914841 917029 + 102003849 AGCD01012505;GBDK01170246;XR_259961 MODEL 8860468 protein-coding LOC102026368 uncharacterized LOC102026368 NW_004955570 1502801 1517549 - 102026368 AGCD01074815;AGCD01074816;GBDF01126183;XM_005413644 XP_005413701 MODEL 9054942 protein-coding Rmp24 ribonuclease MRP subunit p24 INVOLVED IN RNA processing (ortholog); FOUND IN nucleus (ortholog); ribonuclease MRP complex (ortholog) NW_004955402 22573130 22580293 + 102007956 AGCD01000607;GBDF01158825;XM_005372803 XP_005372860 MODEL 8709084 protein-coding S100a9 S100 calcium binding protein A9 INVOLVED IN actin cytoskeleton organization (ortholog); astrocyte development (ortholog); autocrine signaling (ortholog); ASSOCIATED WITH Acute Otitis Media; adult respiratory distress syndrome (ortholog); celiac disease (ortholog); FOUND IN calprotectin complex (ortholog); cornified envelope (ortholog); cytoplasm (ortholog) NW_004955592 90647 93842 - 102006189 AGCD01076300;GBCC01036093;XM_005414603;XM_013509984 XP_005414660;XP_013365438 MODEL 8893553 ncrna LOC102006718 uncharacterized LOC102006718 NW_004955443 8651958 8680827 - 102006718 AGCD01038333;GBDF01053223;XR_001235434;XR_001235435;XR_001235436;XR_001235437;XR_001235438;XR_001235439;XR_262189;XR_262190 MODEL 8958932 protein-coding Rgmb repulsive guidance molecule BMP co-receptor b ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN BMP signaling pathway (ortholog); cell adhesion (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH Prostatic Neoplasms (ortholog); rheumatoid arthritis (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment (ortholog); plasma membrane (ortholog) NW_004955418 14305634 14321804 - 102027979 AGCD01019071;GBCE01044704;GBDK01009283;XM_013513020 XP_013368474 MODEL 8770844 protein-coding Tpra1 transmembrane protein adipocyte associated 1 INVOLVED IN embryonic cleavage (ortholog); negative regulation of mitotic cell cycle phase transition (ortholog); FOUND IN plasma membrane (ortholog) NW_004955429 16032247 16041793 + 102029771 AGCD01028826;GBBH01192980;XM_005387055;XM_005387056;XM_013515540 XP_005387112;XP_005387113;XP_013370994 MODEL 8757276 ncrna LOC102005620 uncharacterized LOC102005620 NW_004955430 3876763 3953407 + 102005620 AGCD01029230;AGCD01029231;AGCD01029232;AGCD01029233;AGCD01029234;AGCD01029235;AGCD01029236;AGCD01029237;AGCD01029238;AGCD01029239;GBDF01177758;XR_001234564;XR_261415 MODEL 8831526 pseudo LOC102017767 UAP56-interacting factor pseudogene NW_004955472 3663252 3663988 + 102017767 AGCD01053517 MODEL 8780363 ncrna LOC102023562 uncharacterized LOC102023562 NW_004955410 27030216 27035415 - 102023562 AGCD01011208;GBCQ01121784;XR_259869 MODEL 10277290 ncrna LOC106147140 uncharacterized LOC106147140 NW_004955522 1896065 1898172 + 106147140 AGCD01068364;GBDF01305415;XR_001231900 MODEL 8790775 pseudo LOC102021837 POU domain, class 5, transcription factor 1-like NW_004955405 15556055 15559935 - 102021837 AGCD01004948 MODEL 8838738 protein-coding Trmt10c tRNA methyltransferase 10C, mitochondrial RNase P subunit ENCODES a protein that exhibits identical protein binding (ortholog); tRNA (adenine(9)-N1)-methyltransferase activity (ortholog); tRNA (guanosine(9)-N1)-methyltransferase activity (ortholog); INVOLVED IN mitochondrial RNA 5'-end processing (ortholog); mitochondrial tRNA 3'-end processing (ortholog); mitochondrial tRNA 5'-end processing (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 30 (ortholog); mitochondrial metabolism disease (ortholog); FOUND IN catalytic complex (ortholog); endoribonuclease complex (ortholog); mitochondrial matrix (ortholog) NW_004955427 3133225 3137070 + 102028659 AGCD01026918;GBCB01042255;XM_005386322;XM_005386323;XM_013515081 XP_005386379;XP_005386380;XP_013370535 MODEL 8841659 protein-coding R3hdm2 R3H domain containing 2 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); systemic juvenile rheumatoid arthritis (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955458 4981967 5127409 - 102023559 AGCD01047446;AGCD01047447;AGCD01047448;AGCD01047449;AGCD01047450;AGCD01047451;AGCD01047452;AGCD01047453;AGCD01047454;AGCD01047455;AGCD01047456;GBDK01001499;XM_005397354;XM_005397356;XM_005397358;XM_013520852;XM_013520853;XM_013520854;XM_013520855;XM_013520856;XM_013520857;XM_013520858;XM_013520859;XM_013520860;XM_013520861;XM_013520862 XP_005397411;XP_005397413;XP_005397415;XP_013376306;XP_013376307;XP_013376308;XP_013376309;XP_013376310;XP_013376311;XP_013376312;XP_013376313;XP_013376314;XP_013376315;XP_013376316 MODEL 10207240 ncrna LOC106148233 uncharacterized LOC106148233 NW_004955418 1828413 1839345 - 106148233 AGCD01018729;GBDJ01252825;XR_001233487;XR_001233488 MODEL 8699634 ncrna LOC102006723 uncharacterized LOC102006723 NW_004955576 651455 652726 - 102006723 AGCD01075304;GBDF01286939;XR_265073 MODEL 126903046 protein-coding RBM46 RNA binding motif protein 46 8966521 protein-coding Lipt1 lipoyltransferase 1 ENCODES a protein that exhibits obsolete N-acyltransferase activity (ortholog); INVOLVED IN protein lipoylation (ortholog); ASSOCIATED WITH Leigh disease (ortholog); Lipoyltransferase 1 Deficiency (ortholog); FOUND IN mitochondrion (ortholog) NW_004955470 5480279 5492259 + 102009933 AGCD01052751;GBDJ01048175;XM_005400739;XM_013522813 XP_005400796;XP_013378267 MODEL 8924612 protein-coding Ptgr3 prostaglandin reductase 3 ENCODES a protein that exhibits 15-oxoprostaglandin 13-reductase [NAD(P)+] activity (ortholog); INVOLVED IN negative regulation of fat cell differentiation (ortholog); FOUND IN mitochondrion (ortholog); peroxisome (ortholog) NW_004955402 58634433 58642498 - 102014848 AGCD01001535;AGCD01001536;AGCD01001537;GBBH01187216;GBCQ01006883;XM_005373085 XP_005373142 MODEL 9060666 protein-coding Socs3 suppressor of cytokine signaling 3 ENCODES a protein that exhibits miRNA binding (ortholog); phosphotyrosine residue binding (ortholog); protein kinase inhibitor activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); branching involved in labyrinthine layer morphogenesis (ortholog); cell surface receptor signaling pathway via JAK-STAT (ortholog); PARTICIPATES IN erythropoietin signaling pathway; insulin signaling pathway; interleukin-2 signaling pathway; ASSOCIATED WITH atherosclerosis (ortholog); Burns (ortholog); cholangiocarcinoma (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog) NW_004955506 4222455 4225563 + 102007451 AGCD01065328;GBCE01031782;XM_005407378 XP_005407435 MODEL 8921970 protein-coding Selenof selenoprotein F ENCODES a protein that exhibits selenium binding (ortholog); thioredoxin peroxidase activity (ortholog); INVOLVED IN response to lipopolysaccharide (ortholog); sperm DNA condensation (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog) NW_004955423 7253980 7285442 + 102019820 AGCD01023596;GBDF01050322;XM_005385122 XP_005385179 MODEL 8717155 pseudo LOC102007084 signal transducer CD24 pseudogene NW_004955406 23812162 23812599 - 102007084 AGCD01006185 MODEL 9017322 protein-coding LOC102024556 uncharacterized LOC102024556 NW_004955414 29948314 29960179 + 102024556 AGCD01015720;AGCD01015721;GBDF01111853;XM_013511743 XP_013367197 MODEL 8727612 protein-coding Pcdhb1 protocadherin beta 1 ASSOCIATED WITH prostate cancer (ortholog) NW_004955611 104824 131744 - 102015586 AGCD01077145;AGCD01077146;GBBH01009968;XM_005414939 XP_005414996 MODEL 8929052 protein-coding LOC102028044 olfactory receptor 2AK2-like NW_004955613 319396 320355 + 102028044 AGCD01077217;XM_005414972 XP_005415029 MODEL 8826602 protein-coding LOC102010478 translation initiation factor IF-2-like NW_004955415 26656571 26658785 + 102010478 AGCD01016602;GBDF01082702;XM_013512111 XP_013367565 MODEL 8721598 protein-coding LOC102030491 piezo-type mechanosensitive ion channel component 1-like NW_004955964 4 4333 + 102030491 AGCD01078759;GBCC01019104;XM_005415156 XP_005415213 MODEL 8979961 protein-coding Slc6a8 solute carrier family 6 member 8 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); creatine transmembrane transporter activity (ortholog); creatine:sodium symporter activity (ortholog); INVOLVED IN creatine transmembrane transport (ortholog); embryonic brain development (ortholog); protein catabolic process (ortholog); PARTICIPATES IN creatine metabolic pathway; ASSOCIATED WITH autistic disorder (ortholog); cerebral creatine deficiency syndrome 1 (ortholog); Developmental Disabilities (ortholog); FOUND IN apical plasma membrane (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955580 419696 426727 + 102013885 AGCD01075606;GBCB01006312;GBDI01117556;XM_005414132 XP_005414189 MODEL 8865947 ncrna LOC102019329 uncharacterized LOC102019329 NW_004955441 8184704 8197646 + 102019329 AGCD01036977;AGCD01036978;GBDJ01402532;XR_262057 MODEL 8976324 pseudo LOC102018899 39S ribosomal protein L47, mitochondrial-like NW_004955409 7916768 7917852 - 102018899 AGCD01009369 MODEL 8756374 protein-coding Smim43 small integral membrane protein 43 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN mesendoderm development (ortholog); positive regulation of D-glucose transmembrane transport (ortholog); ASSOCIATED WITH type 2 diabetes mellitus (ortholog); FOUND IN plasma membrane (ortholog) NW_004955428 18789746 18797027 + 102018420 AGCD01028071;GBDK01348016;XM_013515253 XP_013370707 MODEL 9019112 protein-coding Slc20a1 solute carrier family 20 member 1 ENCODES a protein that exhibits high-affinity phosphate:sodium symporter activity (ortholog); sodium:phosphate symporter activity (ortholog); INVOLVED IN biomineral tissue development (ortholog); cell population proliferation (ortholog); phosphate ion transport (ortholog); PARTICIPATES IN phosphate transport pathway; ASSOCIATED WITH Calcification of Aortic Valve (ortholog); endometriosis (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN plasma membrane (ortholog) NW_004955470 1634470 1649234 - 102025232 AGCD01052650;AGCD01052651;GBDF01188180;XM_005400598 XP_005400655 MODEL 8867656 protein-coding LOC102024557 olfactory receptor 1019-like NW_004955473 3548903 3549826 + 102024557 AGCD01053935;XM_005401294 XP_005401351 MODEL 8837143 protein-coding Raly RALY heterogeneous nuclear ribonucleoprotein ENCODES a protein that exhibits identical protein binding (ortholog); RNA binding (ortholog); transcription coregulator activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955422 27269167 27360224 - 102025699 AGCD01023317;AGCD01023318;AGCD01023319;GBCQ01050320;XM_005384836;XM_005384837;XM_013514160;XM_013514161;XM_013514162 XP_005384893;XP_005384894;XP_013369614;XP_013369615;XP_013369616 MODEL 8900039 pseudo LOC102011704 CCA tRNA nucleotidyltransferase 1, mitochondrial-like NW_004955444 8744286 8760868 + 102011704 AGCD01038945 MODEL 8846820 ncrna LOC102028699 uncharacterized LOC102028699 NW_004955447 14732822 14788878 - 102028699 AGCD01041020;AGCD01041021;GBDF01081861;XR_262433 MODEL 39132481 snorna SNORA70 Small nucleolar RNA SNORA70 8967823 protein-coding Sfmbt1 Scm like with four mbt domains 1 ENCODES a protein that exhibits histone binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of muscle organ development (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955430 2850149 3014859 - 102027772 AGCD01029182;AGCD01029183;AGCD01029184;AGCD01029185;AGCD01029186;AGCD01029187;GBBH01041099;GBDF01043456;XM_013515695;XM_013515696 XP_013371149;XP_013371150 MODEL 8955232 ncrna LOC102009731 uncharacterized LOC102009731 NW_004955495 6647375 6652586 + 102009731 AGCD01062086;GBDK01350689;XR_264167 MODEL 8944882 protein-coding Enpp7 ectonucleotide pyrophosphatase/phosphodiesterase 7 ENCODES a protein that exhibits phosphoric diester hydrolase activity (ortholog); sphingomyelin phosphodiesterase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN fatty acid homeostasis (ortholog); lipid digestion (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH prostate cancer (ortholog); FOUND IN Golgi apparatus (ortholog); microvillus (ortholog); plasma membrane (ortholog) NW_004955506 3151133 3154613 - 102025145 AGCD01065313;XM_005407509 XP_005407566 MODEL 8918779 protein-coding Pdxk pyridoxal kinase ENCODES a protein that exhibits phosphotransferase activity, alcohol group as acceptor (ortholog); pyridoxal binding (ortholog); pyridoxal kinase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); pyridoxal 5'-phosphate biosynthetic process (ortholog); response to amine (ortholog); PARTICIPATES IN hypophosphatasia pathway; vitamin B6 metabolic pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955407 41482216 41494174 - 102005109 AGCD01007869;GBDJ01073643;GBDK01008497;XM_013505430 XP_013360884 MODEL 8982833 protein-coding Ppox protoporphyrinogen oxidase ENCODES a protein that exhibits oxygen-dependent protoporphyrinogen oxidase activity (ortholog); INVOLVED IN heme A biosynthetic process (ortholog); heme B biosynthetic process (ortholog); heme biosynthetic process (ortholog); PARTICIPATES IN acute intermittent porphyria pathway; erythropoietic porphyria pathway; heme biosynthetic pathway; ASSOCIATED WITH acute intermittent porphyria (ortholog); Colorectal Neoplasms (ortholog); genetic disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial membrane (ortholog) NW_004955468 12930387 12934437 + 102004053 AGCD01052192;AGCD01052193;GBDF01155905;XM_005400257;XM_013522352 XP_005400314;XP_013377806 MODEL 8807894 protein-coding LOC102029070 olfactory receptor 52A1-like NW_004955414 20825797 20826738 + 102029070 AGCD01015390;XM_005380481 XP_005380538 MODEL 39133445 snrna U4 U4 spliceosomal RNA 8721762 pseudo LOC102008585 U6 snRNA-associated Sm-like protein LSm3 pseudogene NW_004955583 83314 85152 - 102008585 AGCD01075793 MODEL 8707549 protein-coding Timm17b translocase of inner mitochondrial membrane 17B FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); TIM23 mitochondrial import inner membrane translocase complex (ortholog) NW_004955543 425076 430767 - 102027342 AGCD01071585;GBCE01032810;XM_005411288 XP_005411345 MODEL 8996930 protein-coding Plekhh3 pleckstrin homology, MyTH4 and FERM domain containing H3 NW_004955451 16523822 16531563 - 102028607 AGCD01043687;AGCD01043688;GBBH01062427;GBCB01003667;XM_013519145 XP_013374599 MODEL 8907424 pseudo LOC102025997 vasculin-like protein 1 pseudogene NW_004955471 9096712 9098135 + 102025997 AGCD01053201 MODEL 8796917 protein-coding Prkab2 protein kinase AMP-activated non-catalytic subunit beta 2 ENCODES a protein that exhibits AMP-activated protein kinase activity (ortholog); enzyme binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); positive regulation of cold-induced thermogenesis (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; FOUND IN apical plasma membrane (ortholog); cAMP-dependent protein kinase complex (ortholog); cytoplasm (ortholog) NW_004955568 1253331 1279761 + 102015995 AGCD01074543;GBDF01307774;XM_005413470 XP_005413527 MODEL 9036278 protein-coding Tprg1 tumor protein p63 regulated 1 FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955420 18632583 18853032 - 102019278 AGCD01021047;AGCD01021048;AGCD01021049;AGCD01021050;AGCD01021051;GBCC01000366;XM_005383239;XM_013513625;XM_013513626 XP_005383296;XP_013369079;XP_013369080 MODEL 9031861 ncrna LOC102017768 uncharacterized LOC102017768 NW_004955474 2920107 2934356 - 102017768 AGCD01054312;AGCD01054313;AGCD01054314;GBDF01015351;XR_001230742;XR_263592 MODEL 10224410 ncrna LOC106148234 uncharacterized LOC106148234 NW_004955418 21349156 21360157 - 106148234 AGCD01019266;AGCD01019267;GBDF01279490;XR_001233489;XR_001233490 MODEL 9059391 protein-coding Wdr72 WD repeat domain 72 INVOLVED IN ameloblast differentiation (ortholog); amelogenesis (ortholog); enamel mineralization (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta hypomaturation type 2A3 (ortholog); amelogenesis imperfecta type 1C (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); extracellular region (ortholog) NW_004955409 1451506 1631976 + 102016672 AGCD01009176;AGCD01009177;AGCD01009178;AGCD01009179;AGCD01009180;GBCQ01031346;XM_005376626;XM_013510272;XM_013510273;XM_013510274 XP_005376683;XP_013365726;XP_013365727;XP_013365728 MODEL 8796303 pseudo LOC102015866 RNA 3'-terminal phosphate cyclase-like protein pseudogene NW_004955502 7724548 7725670 - 102015866 AGCD01064460 MODEL 9015553 protein-coding Slc20a2 solute carrier family 20 member 2 ENCODES a protein that exhibits sodium:phosphate symporter activity (ortholog); virus receptor activity (ortholog); INVOLVED IN positive regulation of bone mineralization (ortholog); PARTICIPATES IN phosphate transport pathway; ASSOCIATED WITH basal ganglia calcification (ortholog); basal ganglia disease (ortholog); calcinosis (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); plasma membrane (ortholog) NW_004955536 392341 496616 + 102006389 AGCD01070726;AGCD01070727;AGCD01070728;GBCQ01041012;GBDK01002048;XM_005410504 XP_005410561 MODEL 39131548 protein-coding LIPT2 lipoyl(octanoyl) transferase 2 8957231 ncrna LOC102009732 uncharacterized LOC102009732 NW_004955424 3418563 3425506 - 102009732 AGCD01024310;GBDF01162625;XR_261036 MODEL 8815095 protein-coding Prss37 serine protease 37 INVOLVED IN binding of sperm to zona pellucida (ortholog); cell migration (ortholog); positive regulation of acrosome reaction (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955494 1742104 1747310 + 102013098 AGCD01061422;GBDF01008323;XM_005405400;XM_005405401 XP_005405457;XP_005405458 MODEL 150537101 protein-coding PCDHB14 protocadherin beta 14 8976803 protein-coding Ptgs1 prostaglandin-endoperoxide synthase 1 ENCODES a protein that exhibits oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (ortholog); peroxidase activity (ortholog); prostaglandin-endoperoxide synthase activity (ortholog); INVOLVED IN cyclooxygenase pathway (ortholog); learning (ortholog); maintenance of blood-brain barrier (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH Abscess (ortholog); Alzheimer's disease (ortholog); Anaphylaxis (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum lumen (ortholog); nuclear envelope (ortholog) NW_004955419 5678750 5699305 - 102008534 AGCD01019834;GBCQ01066127;XM_005382532;XM_013513294 XP_005382589;XP_013368748 MODEL 8839223 protein-coding Ppp1ca protein phosphatase 1 catalytic subunit alpha ENCODES a protein that exhibits cadherin binding involved in cell-cell adhesion (ortholog); iron ion binding (ortholog); phosphatase activity (ortholog); INVOLVED IN branching morphogenesis of an epithelial tube (ortholog); circadian regulation of gene expression (ortholog); entrainment of circadian clock by photoperiod (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; Bone morphogenetic proteins signaling pathway; dopamine signaling pathway; ASSOCIATED WITH congestive heart failure (ortholog); dilated cardiomyopathy (ortholog); FOUND IN adherens junction (ortholog); chromosome, telomeric region (ortholog); cytoplasm (ortholog) NW_004955422 18076670 18079859 + 102022506 AGCD01022936;GBDF01050912;XM_005384345 XP_005384402 MODEL 10255991 ncrna LOC106147141 uncharacterized LOC106147141 NW_004955522 3864605 3866339 + 106147141 AGCD01068402;GBDF01008457;XR_001231904 MODEL 8907445 protein-coding LOC102027363 olfactory receptor 9G4-like NW_004955581 874422 875345 + 102027363 AGCD01075701;XM_005414273 XP_005414330 MODEL 9011629 protein-coding LOC102005621 olfactory receptor 5B3-like NW_004955511 3197583 3200113 - 102005621 AGCD01066448;XM_013506384 XP_013361838 MODEL 9062592 protein-coding LOC102023569 caspase-1-like NW_004955412 7816895 7828651 - 102023569 AGCD01012705;GBBH01026203;XM_005378005;XM_013511164;XM_013511165 XP_005378062;XP_013366618;XP_013366619 MODEL 9032574 pseudo LOC102018901 mastermind-like protein 1 pseudogene NW_004955409 22975604 22978035 + 102018901 AGCD01010050 MODEL 8806949 protein-coding LOC102021842 5-hydroxyisourate hydrolase-like NW_004955454 3525747 3529939 - 102021842 AGCD01045087;GBCQ01176230;XM_005395943;XM_013520070 XP_005396000;XP_013375524 MODEL 8751717 protein-coding LOC102011232 liver carboxylesterase 1-like NW_004955433 13570134 13598314 - 102011232 AGCD01031695;AGCD01031696;GBCQ01034315;XM_005388340;XM_005388341 XP_005388397;XP_005388398 MODEL 8875385 protein-coding Trmt11 tRNA methyltransferase 11 ENCODES a protein that exhibits tRNA (guanine(10)-N2)-methyltransferase activity (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Colonic Neoplasms (ortholog); Esophageal Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); methyltransferase complex (ortholog); mitochondrion (ortholog) NW_004955436 7274848 7318762 + 102004850 AGCD01033704;GBDI01353599;XM_005389162;XM_005389163;XM_013516690 XP_005389219;XP_005389220;XP_013372144 MODEL 8757143 pseudo LOC102026003 TIMELESS-interacting protein-like NW_004955416 8733181 8735686 + 102026003 AGCD01017065 MODEL 8868606 ncrna LOC102006725 uncharacterized LOC102006725 NW_004955449 6040808 6089424 - 102006725 AGCD01041947;AGCD01041948;GBDF01079246;XR_001235824 MODEL 10265557 ncrna LOC106149977 uncharacterized LOC106149977 NW_004955458 1257253 1258263 - 106149977 AGCD01047172;GBCQ01085023;XR_001236477 MODEL 8870865 protein-coding Btrc beta-transducin repeat containing E3 ubiquitin protein ligase ENCODES a protein that exhibits beta-catenin binding (ortholog); protein phosphorylated amino acid binding (ortholog); ubiquitin ligase activator activity (ortholog); INVOLVED IN branching involved in mammary gland duct morphogenesis (ortholog); mammary gland epithelial cell proliferation (ortholog); negative regulation of smoothened signaling pathway (ortholog); PARTICIPATES IN Hedgehog signaling pathway; nuclear factor kappa B signaling pathway; nuclear factor, erythroid 2 like 2 signaling pathway; FOUND IN cytoplasm (ortholog); nucleus (ortholog); SCF ubiquitin ligase complex (ortholog) NW_004955485 8724375 8846647 - 102026749 AGCD01058727;AGCD01058728;GBCB01021435;XM_005403874;XM_005403876;XM_005403877;XM_013504108;XM_013504109 XP_005403931;XP_005403933;XP_005403934;XP_013359562;XP_013359563 MODEL 9011044 protein-coding LOC102010856 uncharacterized LOC102010856 NW_004955650 98638 101158 + 102010856 AGCD01077799;GBDJ01149179;XM_005415052;XR_001232591 XP_005415109 MODEL 8947356 protein-coding LOC102003850 putative vomeronasal receptor-like protein 4 NW_004955465 12732451 12749417 - 102003850 AGCD01050556;AGCD01050557;AGCD01050558;GBDF01114303;XM_005398941;XM_013521802;XM_013521803;XM_013521804;XM_013521805 XP_005398998;XP_013377256;XP_013377257;XP_013377258;XP_013377259 MODEL 8951135 protein-coding Socs4 suppressor of cytokine signaling 4 INVOLVED IN negative regulation of epidermal growth factor-activated receptor activity (ortholog); PARTICIPATES IN Jak-Stat signaling pathway; ASSOCIATED WITH pre-malignant neoplasm (ortholog); Reperfusion Injury (ortholog) NW_004955409 8522540 8539551 - 102027617 AGCD01009420;GBDK01193050;XM_005376754 XP_005376811 MODEL 9049169 protein-coding Selenoi selenoprotein I ENCODES a protein that exhibits ethanolaminephosphotransferase activity (ortholog); INVOLVED IN ether lipid biosynthetic process (ortholog); myelination (ortholog); phosphatidylethanolamine biosynthetic process (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 81 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955469 8369499 8410628 + 102011299 AGCD01052465;AGCD01052466;GBDF01041114;XM_005400425 XP_005400482 MODEL 8730508 pseudo LOC102026369 microtubule-associated protein RP/EB family member 1 pseudogene NW_004955447 729586 730731 - 102026369 AGCD01040480 MODEL 8946968 protein-coding Ensa endosulfine alpha ENCODES a protein that exhibits potassium channel inhibitor activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN regulation of insulin secretion (ortholog); response to glucose (ortholog); ASSOCIATED WITH Myocardial Ischemia (ortholog); Spinal Cord Injuries (ortholog); FOUND IN cytoplasm (ortholog) NW_004955413 197239 204867 + 102010046 AGCD01013444;GBDK01006530;XM_005378669;XM_005378670;XM_013511414;XM_013511415 XP_005378726;XP_005378727;XP_013366868;XP_013366869 MODEL 8754638 protein-coding LOC102029071 spindlin-2B-like NW_004955475 3520130 3522114 + 102029071 AGCD01054843;GBDF01146196;XM_005401545;XM_005401546;XM_005401547 XP_005401602;XP_005401603;XP_005401604 MODEL 39133446 snrna U4 U4 spliceosomal RNA 8774521 ncrna LOC102010491 uncharacterized LOC102010491 NW_004955486 2457928 2464475 + 102010491 AGCD01058997;GBDF01144358;XR_263941 MODEL 8736220 pseudo LOC102030492 periphilin-1 pseudogene NW_004956941 124 776 + 102030492 AGCD01080337;XM_005415217 MODEL 8915488 ncrna LOC102012860 uncharacterized LOC102012860 NW_004955418 16415786 16489113 - 102012860 AGCD01019124;GBDF01307770;XR_001233536;XR_260562;XR_260563 MODEL 9041304 protein-coding R3hdm4 R3H domain containing 4 NW_004955495 6926619 6936128 + 102018508 AGCD01062103;AGCD01062104;GBDJ01079366;GBDK01218961;XM_013505107 XP_013360561 MODEL 8811189 protein-coding Slc6a9 solute carrier family 6 member 9 ENCODES a protein that exhibits glycine transmembrane transporter activity (ortholog); glycine:sodium symporter activity (ortholog); INVOLVED IN glycine import across plasma membrane (ortholog); glycine secretion, neurotransmission (ortholog); glycine transport (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); genetic disease (ortholog); glycine encephalopathy (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955537 3520516 3549492 - 102009543 AGCD01070960;AGCD01070961;GBCE01066064;XM_005410695;XM_005410696;XM_005410698;XM_005410699;XM_005410700;XM_005410702;XM_005410704;XM_005410705;XM_013507775;XM_013507776;XM_013507777;XM_013507778;XM_013507779 XP_005410752;XP_005410753;XP_005410755;XP_005410756;XP_005410757;XP_005410759;XP_005410761;XP_005410762;XP_013363229;XP_013363230;XP_013363231;XP_013363232;XP_013363233 MODEL 155888855 protein-coding SMIM45 small integral membrane protein 45 39131485 protein-coding PCDHB2 protocadherin beta 2 8757412 ncrna LOC102011707 uncharacterized LOC102011707 NW_004955446 1115766 1138545 - 102011707 AGCD01039953;GBDF01181940;XR_262364 MODEL 8826985 protein-coding LOC102028700 UDP-glucuronosyltransferase 2A3-like NW_004955447 3438986 3450074 + 102028700 AGCD01040614;AGCD01040615;AGCD01040616;GBDK01244445;XM_013518566 XP_013374020 MODEL 8862284 protein-coding LOC102010492 zinc finger protein 660 NW_004955420 26897949 26926759 - 102010492 AGCD01021435;GBDF01039917;XM_005383479;XM_013513416;XM_013513417;XM_013513418;XM_013513419;XM_013513420;XM_013513421;XM_013513422;XM_013513423 XP_005383536;XP_013368870;XP_013368871;XP_013368872;XP_013368873;XP_013368874;XP_013368875;XP_013368876;XP_013368877 MODEL 8761916 protein-coding Rmp64 ribonuclease MRP subunit p64 INVOLVED IN negative regulation of neuron differentiation (ortholog); positive regulation of Notch signaling pathway (ortholog); RNA processing (ortholog); ASSOCIATED WITH anauxetic dysplasia 3 (ortholog); microcephaly (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955427 13232375 13247164 - 102029987 AGCD01027241;AGCD01027242;GBDI01385924;XM_005386394;XM_013515165 XP_005386451;XP_013370619 MODEL 9014131 protein-coding Ralyl RALY RNA binding protein like ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955417 2123050 2747906 + 102025909 AGCD01017870;AGCD01017871;AGCD01017872;AGCD01017873;AGCD01017874;AGCD01017875;AGCD01017876;AGCD01017877;AGCD01017878;AGCD01017879;AGCD01017880;AGCD01017881;AGCD01017882;GBDI01355838;XM_005381724;XM_005381725;XM_005381727;XM_013512855;XM_013512856 XP_005381781;XP_005381782;XP_005381784;XP_013368309;XP_013368310 MODEL 8959207 protein-coding LOC102007088 uncharacterized LOC102007088 NW_004955459 3561454 3572591 - 102007088 AGCD01048015;GBDF01086912;XM_013521036 XP_013376490 MODEL 8892991 protein-coding Pdxp pyridoxal phosphatase ENCODES a protein that exhibits growth factor binding (ortholog); heat shock protein binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN actin rod assembly (ortholog); cellular response to ATP (ortholog); dephosphorylation (ortholog); PARTICIPATES IN hypophosphatasia pathway; vitamin B6 metabolic pathway; FOUND IN actin cytoskeleton (ortholog); cell-cell junction (ortholog); cleavage furrow (ortholog) NW_004955413 24055900 24063902 + 102008839 AGCD01014346;AGCD01014347;GBDK01027422;XM_005379654 XP_005379711 MODEL 39131357 protein-coding S100A9 S100 calcium binding protein A9 8812459 protein-coding LOC102028045 olfactory receptor 14A16-like NW_004955630 148328 149260 - 102028045 AGCD01077524;XM_005415036 XP_005415093 MODEL 8954913 protein-coding Rgn regucalcin ENCODES a protein that exhibits calcium ion binding (ortholog); gluconolactonase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN intracellular calcium ion homeostasis (ortholog); kidney development (ortholog); L-ascorbic acid biosynthetic process (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Experimental Diabetes Mellitus (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955516 958416 978829 - 102024267 AGCD01067406;AGCD01067407;GBDI01162056;XM_005408970;XM_005408971 XP_005409027;XP_005409028 MODEL 8733591 pseudo LOC102010496 normal mucosa of esophagus-specific gene 1 protein pseudogene NW_004955421 23376672 23380513 - 102010496 AGCD01022183 MODEL 9041715 protein-coding LOC102010858 heterogeneous nuclear ribonucleoprotein U-like protein 2 NW_004957878 562 1192 + 102010858 AGCD01081274;XM_005415235 XP_005415292 MODEL 9008903 pseudo LOC102019330 synphilin-1-like NW_004955441 17320061 17322072 + 102019330 AGCD01037288 MODEL 8956886 protein-coding LOC102024560 transmembrane and coiled-coil domain-containing protein 5B-like NW_004955416 1323376 1331862 + 102024560 AGCD01016833;GBDF01043273;XM_005381168 XP_005381225 MODEL 9057645 ncrna LOC102029076 uncharacterized LOC102029076 NW_004955416 15636154 15639658 - 102029076 AGCD01017336;GBDF01220169;XR_001233373;XR_001233374 MODEL 8826983 pseudo LOC102027365 PEST proteolytic signal-containing nuclear protein-like NW_004955449 12712718 12719788 + 102027365 AGCD01042119;AGCD01042120 MODEL 8753085 pseudo LOC102017770 IST1 homolog NW_004955416 24322305 24340636 - 102017770 AGCD01017567 MODEL 8744360 protein-coding Rbm47 RNA binding motif protein 47 ENCODES a protein that exhibits enzyme binding (ortholog); enzyme-substrate adaptor activity (ortholog); mRNA 3'-UTR binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); cytidine to uridine editing (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH systemic juvenile rheumatoid arthritis (ortholog); FOUND IN apolipoprotein B mRNA editing enzyme complex (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955443 6940523 7100130 + 102016758 AGCD01038268;AGCD01038269;AGCD01038270;AGCD01038271;AGCD01038272;GBBH01118381;XM_005391951;XM_005391952;XM_005391953;XM_005391954 XP_005392008;XP_005392009;XP_005392010;XP_005392011 MODEL 8909101 pseudo LOC102018902 transcriptional repressor protein YY1 pseudogene NW_004955409 29284945 29286353 + 102018902 AGCD01010258 MODEL 9005513 protein-coding Prkaca protein kinase cAMP-activated catalytic subunit alpha ENCODES a protein that exhibits ATP binding (ortholog); cAMP-dependent protein kinase activity (ortholog); histone H1-4S35 kinase activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); cAMP/PKA signal transduction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH ACTH-independent macronodular adrenal hyperplasia 1 (ortholog); adrenal cortical adenoma (ortholog); Adrenal Gland Neoplasms (ortholog); FOUND IN acrosomal vesicle (ortholog); axoneme (ortholog); cAMP-dependent protein kinase complex (ortholog) NW_004955415 32794172 32807944 - 102010480 AGCD01016734;GBDK01132638;XM_013512354 XP_013367808 MODEL 10140023 ncrna LOC106149978 uncharacterized LOC106149978 NW_004955458 2108409 2134724 + 106149978 AGCD01047214;AGCD01047215;GBDI01150316;XR_001236483 MODEL 8842478 protein-coding Trmt112 tRNA methyltransferase activator subunit 11-2 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); protein methyltransferase activity (ortholog); tRNA methyltransferase activator activity (ortholog); INVOLVED IN positive regulation of rRNA processing (ortholog); rRNA (guanine-N7)-methylation (ortholog); rRNA methylation (ortholog); FOUND IN cytoplasm (ortholog); histone methyltransferase complex (ortholog); methyltransferase complex (ortholog) NW_004955422 20767599 20768505 + 102012548 AGCD01023086;GBDF01007908;XM_005384605 XP_005384662 MODEL 8893042 pseudo LOC102011715 pre-mRNA-splicing factor SLU7 pseudogene NW_004955402 54098472 54100151 + 102011715 AGCD01001386 MODEL 8980825 ncrna LOC102008587 uncharacterized LOC102008587 NW_004955450 5676012 5702239 + 102008587 AGCD01042508;AGCD01042509;GBDF01280526;XR_001235879;XR_262532 MODEL 8714588 protein-coding Timm21 translocase of inner mitochondrial membrane 21 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); mitochondrial respiratory chain complex IV assembly (ortholog); protein import into mitochondrial matrix (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; FOUND IN mitochondrion (ortholog); TIM23 mitochondrial import inner membrane translocase complex (ortholog) NW_004955402 57586651 57598817 + 102009241 AGCD01001501;GBDF01305105;XM_005373066;XR_259107;XR_259108 XP_005373123 MODEL 8837929 protein-coding Ramac RNA guanine-7 methyltransferase activating subunit ENCODES a protein that exhibits enzyme activator activity (ortholog); molecular function activator activity (ortholog); RNA binding (ortholog); INVOLVED IN 7-methylguanosine mRNA capping (ortholog); PARTICIPATES IN 5'-end pre-mRNA capping pathway; FOUND IN methyltransferase complex (ortholog); mRNA cap methyltransferase RNMT:RAMAC complex (ortholog); mRNA capping enzyme complex (ortholog) NW_004955416 13686997 13691792 - 102004382 AGCD01017232;GBCE01097705;XM_005381468;XM_013512498 XP_005381525;XP_013367952 MODEL 8849622 protein-coding Selenok selenoprotein K ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN calcium ion transport (ortholog); intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); macrophage derived foam cell differentiation (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955430 3870925 3876636 - 102005283 AGCD01029230;GBDK01011326;XM_013515674 XP_013371128 MODEL 8957259 protein-coding Pdyn prodynorphin INVOLVED IN locomotion involved in locomotory behavior (ortholog); response to ethanol (ortholog); response to immobilization stress (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); Alcohol Withdrawal Seizures (ortholog); alcohol withdrawal syndrome (ortholog); FOUND IN axon terminus (ortholog); dendritic spine (ortholog); dense core granule (ortholog) NW_004955415 13106087 13119497 - 102012315 AGCD01016242;GBDJ01390054;XM_005380743;XM_005380744 XP_005380800;XP_005380801 MODEL 8843577 protein-coding Tprg1l tumor protein p63 regulated 1 like ENCODES a protein that exhibits calmodulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN calcineurin-NFAT signaling cascade (ortholog); negative regulation of synaptic transmission (ortholog); regulation of synaptic transmission, glutamatergic (ortholog); FOUND IN calyx of Held (ortholog); extrinsic component of synaptic vesicle membrane (ortholog); glutamatergic synapse (ortholog) NW_004955486 8007678 8013996 - 102027308 AGCD01059145;GBDF01009572;XM_005404149 XP_005404206 MODEL 8848056 protein-coding Enthd1 ENTH domain containing 1 NW_004955413 25580200 25684390 - 102006446 AGCD01014409;AGCD01014410;AGCD01014411;AGCD01014412;GBCB01019792;XM_005379305;XM_013511604 XP_005379362;XP_013367058 MODEL 39132490 snorna SNORA70 Small nucleolar RNA SNORA70 8910150 protein-coding Smim48 small integral membrane protein 48 FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955467 10845588 10847304 - 102029492 AGCD01051586;GBDK01281126;XM_005399651;XM_013522024 XP_005399708;XP_013377478 MODEL 8726454 pseudo LOC102026006 UDP-N-acetylglucosamine transporter-like NW_004955481 1573638 1578463 - 102026006 AGCD01056837;AGCD01056838 MODEL 8844349 ncrna LOC102021847 uncharacterized LOC102021847 NW_004955455 13948091 13950615 - 102021847 AGCD01046080;GBDI01276709;XR_262858 MODEL 8968225 protein-coding LOC102012862 2'-5'-oligoadenylate synthase 1-like NW_004955482 9327058 9336478 + 102012862 AGCD01057565;AGCD01081652;GBDI01244959;XM_005403208 XP_005403265 MODEL 8819606 protein-coding LOC102011234 40S ribosomal protein S17-like NW_004955523 399503 400042 - 102011234 AGCD01068454;GBDJ01263809;XM_013507145 XP_013362599 MODEL 8750629 pseudo LOC102015867 la-related protein 4 pseudogene NW_004955503 7794873 7799158 - 102015867 AGCD01064799 MODEL 8823193 protein-coding LOC102006726 saoe class I histocompatibility antigen, C alpha chain-like NW_004955583 1134089 1136685 - 102006726 AGCD01075893;GBCC01000509;GBDK01001536;XM_013509825 XP_013365279 MODEL 8954322 protein-coding Bub1 BUB1 mitotic checkpoint serine/threonine kinase ENCODES a protein that exhibits histone H2A kinase activity (ortholog); protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); mitotic spindle assembly checkpoint signaling (ortholog); positive regulation of intrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH colon carcinoma (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN chromosome, centromeric region (ortholog); condensed chromosome, centromeric region (ortholog); kinetochore (ortholog) NW_004955470 3152798 3190185 + 102007217 AGCD01052692;AGCD01052693;GBDF01156049;XM_005400628 XP_005400685 MODEL 8847876 ncrna LOC102029079 uncharacterized LOC102029079 NW_004955417 30552078 30553573 - 102029079 AGCD01018625;GBCQ01113868;XR_260519 MODEL 8705676 protein-coding Slc71a1 solute carrier family 71 member 1 INVOLVED IN acrosome assembly (ortholog); sperm mitochondrion organization (ortholog); spermatid development (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955435 4810919 4831829 + 102003580 AGCD01032855;GBCB01077165;GBDI01112507;XM_005388793;XM_013516437 XP_005388850;XP_013371891 MODEL 10269422 ncrna LOC106147142 uncharacterized LOC106147142 NW_004955522 3219986 3224438 + 106147142 AGCD01068381;GBDF01157855;XR_001231906 MODEL 9009435 protein-coding LOC102007094 uncharacterized LOC102007094 NW_004955411 33570 60551 + 102007094 AGCD01011450;XM_013510711 XP_013366165 MODEL 8998782 protein-coding LOC102009733 probable N-acetyltransferase CML1 NW_004955424 11899258 11900803 - 102009733 AGCD01024576;GBCQ01149453;XM_013514700 XP_013370154 MODEL 8920730 protein-coding Litaf lipopolysaccharide induced TNF factor ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 1 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of early endosome membrane (ortholog); cytoplasmic side of late endosome membrane (ortholog) NW_004955442 7054418 7084973 + 102027463 AGCD01037613;GBBH01210558;XM_005391161;XM_013517903 XP_005391218;XP_013373357 MODEL 9019987 protein-coding Socs5 suppressor of cytokine signaling 5 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); receptor tyrosine kinase binding (ortholog); INVOLVED IN cellular response to low-density lipoprotein particle stimulus (ortholog); cytokine-mediated signaling pathway (ortholog); epidermal growth factor receptor signaling pathway (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; Jak-Stat signaling pathway NW_004955441 13593342 13657389 + 102014611 AGCD01037155;AGCD01037156;AGCD01037157;GBCB01059474;GBDJ01349288;XM_005390984 XP_005391041 MODEL 8833910 protein-coding Ptgs2 prostaglandin-endoperoxide synthase 2 ENCODES a protein that exhibits enzyme binding (ortholog); heme binding (ortholog); oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (ortholog); INVOLVED IN angiogenesis (ortholog); bone mineralization (ortholog); brown fat cell differentiation (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Abscess (ortholog); acute kidney failure (ortholog); FOUND IN caveola (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955406 25077988 25086259 - 102014110 AGCD01006213;AGCD01006214;GBCQ01175625;GBDJ01276049;XM_005375091 XP_005375148 MODEL 39133457 snrna U4 U4 spliceosomal RNA 8962766 protein-coding Plekhj1 pleckstrin homology domain containing J1 NW_004955495 5904410 5907211 + 102017470 AGCD01062043;GBDF01082206;XM_005405916 XP_005405973 MODEL 8773230 protein-coding Ppp1cb protein phosphatase 1 catalytic subunit beta ENCODES a protein that exhibits myosin-light-chain-phosphatase activity (ortholog); phosphatase activity (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN circadian regulation of gene expression (ortholog); entrainment of circadian clock by photoperiod (ortholog); protein dephosphorylation (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; dopamine signaling pathway; glycogen biosynthetic pathway; ASSOCIATED WITH Dandy-Walker syndrome (ortholog); genetic disease (ortholog); Noonan syndrome (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955469 10657029 10682398 + 102015501 AGCD01052544;GBCQ01003561;XM_005400536;XM_013522618 XP_005400593;XP_013378072 MODEL 8847886 ncrna LOC102030494 uncharacterized LOC102030494 NW_004955453 1808756 1822017 - 102030494 AGCD01044619;XR_262706 MODEL 8806556 protein-coding LOC102010861 chromosome unknown open reading frame, human C1orf94 INVOLVED IN intracellular protein localization (ortholog); mRNA destabilization (ortholog); single fertilization (ortholog) NW_004955452 12288967 12325948 + 102010861 AGCD01044350;GBDF01048888;XM_005395119;XM_005395120;XM_005395121 XP_005395176;XP_005395177;XP_005395178 MODEL 8992308 ncrna LOC102005624 uncharacterized LOC102005624 NW_004955518 1052939 1058556 - 102005624 AGCD01067755;GBDF01055606;XR_001231850;XR_264561;XR_264562 MODEL 10230175 ncrna LOC106148235 uncharacterized LOC106148235 NW_004955418 5334236 5357883 + 106148235 AGCD01018841;XR_001233493;XR_001233494;XR_001233495 MODEL 8826063 protein-coding R3hdml R3H domain containing like NW_004955445 12991667 13004174 - 102018663 AGCD01039766;GBCQ01049962;XM_005392473 XP_005392530 MODEL 8809712 protein-coding Sfmbt2 Scm like with four mbt domains 2 ENCODES a protein that exhibits histone binding (ortholog); INVOLVED IN negative regulation of gene expression (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955421 23691648 23913781 - 102006670 AGCD01022193;AGCD01022194;AGCD01022195;AGCD01022196;AGCD01022197;AGCD01022198;AGCD01022199;GBDI01384258;XM_005383870;XM_005383871;XM_013513767;XM_013513768;XM_013513769;XM_013513771;XM_013513772;XM_013513773 XP_005383927;XP_005383928;XP_013369221;XP_013369222;XP_013369223;XP_013369225;XP_013369226;XP_013369227 MODEL 9016982 protein-coding Timm22 translocase of inner mitochondrial membrane 22 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); PARTICIPATES IN carrier pathway of mitochondrial protein import; ASSOCIATED WITH combined oxidative phosphorylation deficiency 43 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); TIM22 mitochondrial import inner membrane insertion complex (ortholog) NW_004955481 2494943 2501532 + 102029078 AGCD01056876;GBDF01153078;XM_005402649 XP_005402706 MODEL 8807769 protein-coding LOC102023571 histone H2B type 2-E NW_004955413 865234 866657 + 102023571 AGCD01013492;XM_005378713 XP_005378770 MODEL 8998755 protein-coding Slc22a11 solute carrier family 22 member 11 ENCODES a protein that exhibits prostaglandin transmembrane transporter activity (ortholog); secondary active transmembrane transporter activity (ortholog); solute:inorganic anion antiporter activity (ortholog); INVOLVED IN prostaglandin transport (ortholog); transmembrane transport (ortholog); urate metabolic process (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); external side of plasma membrane (ortholog) NW_004955422 20582736 20595872 - 102008741 AGCD01023084;GBCQ01008134;XM_005384592;XM_013513819 XP_005384649;XP_013369273 MODEL 9049218 protein-coding Wdr73 WD repeat domain 73 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN cytoplasmic microtubule organization (ortholog); nucleus organization (ortholog); ASSOCIATED WITH dystonia (ortholog); epilepsy (ortholog); Galloway-Mowat syndrome (ortholog); FOUND IN cleavage furrow (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955416 14471479 14485416 + 102012643 AGCD01017270;AGCD01017271;GBCB01039745;XM_005381498 XP_005381555 MODEL 9019712 ncrna LOC102030496 uncharacterized LOC102030496 NW_004955406 22918897 23017767 - 102030496 AGCD01006161;AGCD01006162;GBCB01027527;XR_001236675;XR_001236676;XR_259504 MODEL 8912959 protein-coding Prss38 serine protease 38 NW_004955581 455309 458793 - 102023756 AGCD01075673;AGCD01075674;GBDF01053786;XM_005414263 XP_005414320 MODEL 9064735 protein-coding LOC102017774 haptoglobin NW_004955484 4738412 4742596 + 102017774 AGCD01058231;GBDJ01008430;XM_005403528 XP_005403585 MODEL 10118803 protein-coding LOC106149979 translation initiation factor IF-2-like NW_004955459 2332304 2333294 + 106149979 AGCD01047988;GBCQ01090380;XM_013521050 XP_013376504 MODEL 8849101 protein-coding LOC102015868 leukocyte surface antigen CD47-like NW_004955427 9219807 9252882 + 102015868 AGCD01027095;GBDF01156224;XM_005386355;XM_005386356;XM_005386357;XM_005386358;XR_261250 XP_005386412;XP_005386413;XP_005386414;XP_005386415 MODEL 8877859 pseudo LOC102008588 tetratricopeptide repeat protein 14 pseudogene NW_004955402 62282155 62283653 - 102008588 AGCD01001640 MODEL 8892147 protein-coding Rgp1 RGP1 partner of RAB6A GEF complex ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN negative regulation of protein catabolic process (ortholog); positive regulation of GTPase activity (ortholog); retrograde transport, endosome to Golgi (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); protein-containing complex (ortholog) NW_004955472 550198 554038 - 102009375 AGCD01053340;GBBH01207777;GBDK01228476;XM_005401008 XP_005401065 MODEL 8745251 protein-coding LOC102028046 olfactory receptor 6C2-like NW_004955741 22145 23083 - 102028046 AGCD01078244;XM_005415085 XP_005415142 MODEL 9050663 protein-coding Trmt13 tRNA methyltransferase 13 NW_004955435 4885910 4902759 + 102022535 AGCD01032861;GBDF01002213;GBDJ01075836;XM_013516438 XP_013371892 MODEL 9055927 protein-coding Slc71a2 solute carrier family 71 member 2 FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955422 24000123 24061998 - 102025591 AGCD01023213;AGCD01023214;AGCD01023215;GBBH01116404;GBDK01142751;XM_013514003 XP_013369457 MODEL 39131490 protein-coding PCDHB4 protocadherin beta 4 8951110 pseudo LOC102024561 xenotropic and polytropic retrovirus receptor 1 pseudogene NW_004955478 9436576 9442072 + 102024561 AGCD01056071 MODEL 8759906 protein-coding LOC102019331 olfactory receptor 11H4 NW_004955550 1024441 1025403 + 102019331 AGCD01072541;XM_005412042 XP_005412099 MODEL 8721634 protein-coding Selenom selenoprotein M INVOLVED IN adipose tissue development (ortholog); corticosterone secretion (ortholog); hormone metabolic process (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955455 5294317 5303621 - 102004353 AGCD01045720;GBDF01089321;XM_005396296;XM_013520299 XP_005396353;XP_013375753 MODEL 9035886 protein-coding LOC102003851 olfactory receptor 150-like NW_004955412 24925251 24928447 + 102003851 AGCD01013131;XM_005378411 XP_005378468 MODEL 8814011 protein-coding LOC102027368 olfactory receptor 2M3-like NW_004955630 73527 74474 + 102027368 AGCD01077520;XM_005415034 XP_005415091 MODEL 8889427 pseudo LOC102028702 uncharacterized LOC102028702 NW_004955449 14301840 14308583 - 102028702 AGCD01042164 MODEL 8841859 protein-coding Rnase10 ribonuclease A family member 10 (inactive) INVOLVED IN epithelial cell morphogenesis (ortholog); heterotypic cell-cell adhesion (ortholog); male gonad development (ortholog) NW_004955550 1326203 1331558 + 102026912 AGCD01072561;AGCD01072562;XM_005412067;XM_013508553 XP_005412124;XP_013364007 MODEL 8801404 pseudo LOC102018903 ribonucleoside-diphosphate reductase subunit M2 pseudogene NW_004955460 9878566 9879060 - 102018903 AGCD01048558 MODEL 8978403 protein-coding LOC102010497 chromosome unknown open reading frame, human C16orf54 ASSOCIATED WITH COVID-19 (ortholog); spondylocostal dysostosis 5 (ortholog) NW_004955493 7204452 7207168 + 102010497 AGCD01061164;GBCQ01165127;XM_005405245;XM_005405246;XR_264093 XP_005405302;XP_005405303 MODEL 8854842 protein-coding S100b S100 calcium binding protein B ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); astrocyte differentiation (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Alzheimer's disease (ortholog); Animal Disease Models (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955407 42972584 42980510 - 102021420 AGCD01007902;GBDI01019684;XM_005375939 XP_005375996 MODEL 9003964 ncrna LOC102011719 uncharacterized LOC102011719 NW_004955799 1703 3502 + 102011719 AGCD01078370;GBDF01089331;XR_265186 MODEL 9035162 protein-coding Wdr74 WD repeat domain 74 INVOLVED IN blastocyst formation (ortholog); ribosomal large subunit biogenesis (ortholog); RNA metabolic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); disease of cellular proliferation (ortholog); melanoma (ortholog); FOUND IN nuclear exosome (RNase complex) (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955599 408076 413770 + 102005655 AGCD01076646;GBCE01053828;XM_005414759;XM_005414760 XP_005414816;XP_005414817 MODEL 9030597 protein-coding Ramp1 receptor activity modifying protein 1 ENCODES a protein that exhibits amylin receptor activity (ortholog); calcitonin gene-related peptide binding (ortholog); calcitonin gene-related peptide receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); amylin receptor 1 signaling pathway (ortholog); amylin receptor signaling pathway (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cell surface (ortholog); CGRP receptor complex (ortholog); extracellular region (ortholog) NW_004955542 2530349 2564072 - 102016423 AGCD01071524;AGCD01071525;GBBH01000037;GBDF01085513;XM_013508020 XP_013363474 MODEL 8885614 pseudo LOC102010862 E3 ubiquitin-protein ligase TRIM23 pseudogene NW_004955405 30595460 30597274 + 102010862 AGCD01005276 MODEL 8920114 protein-coding Ppp1cc protein phosphatase 1 catalytic subunit gamma ENCODES a protein that exhibits lamin binding (ortholog); phosphatase activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN blastocyst development (ortholog); circadian regulation of gene expression (ortholog); entrainment of circadian clock by photoperiod (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; dopamine signaling pathway; glycogen biosynthetic pathway; ASSOCIATED WITH congestive heart failure (ortholog); Ovarian Neoplasms (ortholog); Spinal Cord Injuries (ortholog); FOUND IN chromosome, telomeric region (ortholog); cleavage furrow (ortholog); cytoplasm (ortholog) NW_004955482 7582605 7605340 - 102026527 AGCD01057477;GBDF01006573;XM_005403165 XP_005403222 MODEL 10080961 ncrna LOC106148236 uncharacterized LOC106148236 NW_004955418 18823789 18836515 + 106148236 AGCD01019182;AGCD01019183;GBDF01077180;XR_001233496 MODEL 9008796 pseudo LOC102012863 FH1/FH2 domain-containing protein 1 pseudogene NW_004955485 3175160 3181031 - 102012863 AGCD01058533 MODEL 8726199 ncrna LOC102011238 uncharacterized LOC102011238 NW_004955435 16675032 16735309 - 102011238 AGCD01033336;AGCD01033337;GBDF01045771;XR_001234857;XR_001234858;XR_261711;XR_261713 MODEL 8927091 protein-coding LOC102026373 HLA class I histocompatibility antigen, B-27 alpha chain-like NW_004955583 1075859 1079573 - 102026373 AGCD01075885;AGCD01075886;GBBH01089730;XM_013509779 XP_013365233 MODEL 8869229 protein-coding LOC102029083 olfactory receptor 14J1-like NW_004955483 121596 122549 - 102029083 AGCD01057600;XM_013503807 XP_013359261 MODEL 8728765 ncrna LOC102006728 uncharacterized LOC102006728 NW_004955449 14135156 14158149 - 102006728 AGCD01042159;AGCD01042160;GBDF01209448;XR_262503 MODEL 8872679 pseudo LOC102030498 nuclear envelope phosphatase-regulatory subunit 1 pseudogene NW_004955454 10495643 10500376 + 102030498 AGCD01045366 MODEL 10184950 ncrna LOC106147143 uncharacterized LOC106147143 NW_004955522 3333872 3353025 - 106147143 AGCD01068381;GBDF01139727;XR_001231911 MODEL 8938081 protein-coding Slc22a12 solute carrier family 22 member 12 ENCODES a protein that exhibits PDZ domain binding (ortholog); urate transmembrane transporter activity (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); renal urate salt excretion (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); Congenital Abnormalities (ortholog); diabetes mellitus (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); membrane (ortholog) NW_004955422 20555458 20561818 - 102007566 AGCD01023083;GBCQ01008135;XM_005384586;XM_005384588;XM_005384590 XP_005384643;XP_005384645;XP_005384647 MODEL 8721033 ncrna LOC102009735 uncharacterized LOC102009735 NW_004955500 4775193 4791358 - 102009735 AGCD01063811;GBDF01219713;XR_001231484;XR_001231485;XR_001231486 MODEL 10208788 ncrna LOC106149980 uncharacterized LOC106149980 NW_004955459 1248910 1282515 - 106149980 AGCD01047965;AGCD01047966;GBDF01224976;XR_001236484 MODEL 9025334 pseudo LOC102015870 uncharacterized LOC102015870 NW_004955427 4501834 4576758 - 102015870 AGCD01026965;AGCD01026966;AGCD01026967;AGCD01026968;AGCD01026969;AGCD01026970 MODEL 9040908 protein-coding Socs6 suppressor of cytokine signaling 6 INVOLVED IN negative regulation of T cell activation (ortholog); proteasomal protein catabolic process (ortholog); regulation of growth (ortholog); PARTICIPATES IN insulin signaling pathway; Jak-Stat signaling pathway; FOUND IN immunological synapse (ortholog) NW_004955402 53847859 53876245 + 102005983 AGCD01001374;AGCD01001375;AGCD01001376;AGCD01001377;GBCB01073847;XM_005373056;XM_005373057 XP_005373113;XP_005373114 MODEL 8744501 protein-coding Pdzd11 PDZ domain containing 11 INVOLVED IN pore complex assembly (ortholog); FOUND IN basolateral plasma membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955475 9841950 9845565 - 102022693 AGCD01055075;GBDK01077848;XM_005401618;XM_005401619;XM_005401620;XM_013502873 XP_005401675;XP_005401676;XP_005401677;XP_013358327 MODEL 8721763 protein-coding LOC102008589 protein FAM170A-like NW_004955644 8842 16020 + 102008589 AGCD01077727;GBDF01075273;XM_005415048;XM_005415049 XP_005415105;XP_005415106 MODEL 8970787 protein-coding LOC102010503 lariat debranching enzyme-like NW_004955501 822211 823819 + 102010503 AGCD01064040;GBDF01305393;XM_005406749 XP_005406806 MODEL 39132503 snorna SNORA70 Small nucleolar RNA SNORA70 8926045 protein-coding Rbm48 RNA binding motif protein 48 ASSOCIATED WITH nephronophthisis (ortholog); FOUND IN nucleoplasm (ortholog); U12-type catalytic step 2 spliceosome (ortholog) NW_004955432 9461507 9498099 + 102004630 AGCD01030906;GBDF01196141;XM_005388020;XM_005388021;XM_013515938;XM_013515939;XR_261518 XP_005388077;XP_005388078;XP_013371392;XP_013371393 MODEL 8823654 protein-coding Plekhm1 pleckstrin homology and RUN domain containing M1 INVOLVED IN autophagosome-lysosome fusion (ortholog); late endosome to lysosome transport (ortholog); lysosome localization (ortholog); ASSOCIATED WITH Autosomal Dominant Osteopetrosis 3 (ortholog); autosomal recessive osteopetrosis 1 (ortholog); autosomal recessive osteopetrosis 6 (ortholog); FOUND IN autolysosome (ortholog); autolysosome membrane (ortholog); endosome membrane (ortholog) NW_004955451 18043194 18079808 - 102027259 AGCD01043790;GBDI01179295;XM_005394577;XM_013519289;XM_013519290;XM_013519291;XM_013519292;XM_013519293;XM_013519294;XM_013519295;XM_013519296 XP_005394634;XP_013374743;XP_013374744;XP_013374745;XP_013374746;XP_013374747;XP_013374748;XP_013374749;XP_013374750 MODEL 8808835 protein-coding Rgr retinal G protein coupled receptor INVOLVED IN retinoid metabolic process (ortholog); ASSOCIATED WITH cone dystrophy (ortholog); fundus dystrophy (ortholog); optic atrophy (ortholog); FOUND IN plasma membrane (ortholog) NW_004955510 3752118 3762251 + 102004738 AGCD01066247;XM_005407884 XP_005407941 MODEL 8706351 ncrna LOC102005629 uncharacterized LOC102005629 NW_004955526 3115354 3136784 + 102005629 AGCD01069328;XR_264659 MODEL 8913001 protein-coding LOC102026009 uncharacterized LOC102026009 NW_004955418 6811123 6824711 - 102026009 AGCD01018882;AGCD01018883;GBDJ01282837;XM_005382344 XP_005382401 MODEL 8787750 protein-coding Trmt1l tRNA methyltransferase 1L ENCODES a protein that exhibits tRNA (guanine(27)-N2)-dimethyltransferase activity (ortholog); INVOLVED IN adult behavior (ortholog); adult locomotory behavior (ortholog); tRNA N2-guanine methylation (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955406 23735715 23772010 - 102008816 AGCD01006182;AGCD01006183;AGCD01006184;GBDF01007025;XM_005375072;XM_005375073;XM_013521695;XM_013521698 XP_005375129;XP_005375130;XP_013377149;XP_013377152 MODEL 8713018 ncrna LOC102024562 uncharacterized LOC102024562 NW_004955416 31688788 31730228 + 102024562 AGCD01017769;GBDF01307972;XR_001233366;XR_001233367;XR_001233368;XR_260450 MODEL 8789528 protein-coding Timm23b translocase of inner mitochondrial membrane 23 homolog B FOUND IN mitochondrion (ortholog) NW_004955556 414345 435182 - 102025949 AGCD01073175;GBDJ01378436;XM_005412558 XP_005412615 MODEL 8944768 ncrna LOC102019332 uncharacterized LOC102019332 NW_004955442 5088498 5127744 + 102019332 AGCD01037552;GBDF01212046;XR_262114 MODEL 8705067 protein-coding Rab10 RAB10, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GDP-dissociation inhibitor binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); axonogenesis (ortholog); cellular response to antibiotic (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH Liver Reperfusion Injury (ortholog); FOUND IN cilium (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum tubular network (ortholog) NW_004955469 8057235 8138983 + 102009369 AGCD01052446;AGCD01052447;AGCD01052448;AGCD01052449;AGCD01052450;AGCD01052451;AGCD01052452;GBDF01090181;XM_005400418 XP_005400475 MODEL 8885495 protein-coding Selenon selenoprotein N INVOLVED IN ATP metabolic process (ortholog); calcium ion homeostasis (ortholog); calcium ion import (ortholog); ASSOCIATED WITH congenital myopathy 4A (ortholog); congenital myopathy 4B (ortholog); congenital structural myopathy (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); mitochondria-associated endoplasmic reticulum membrane contact site (ortholog) NW_004955452 5295716 5311113 + 102008372 AGCD01044015;AGCD01044016;AGCD01044017;GBBH01143587;GBCE01116282;XM_013519601 XP_013375055 MODEL 8847952 protein-coding Prkacb protein kinase cAMP-activated catalytic subunit beta ENCODES a protein that exhibits ATP binding (ortholog); cAMP-dependent protein kinase activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN negative regulation of meiotic cell cycle (ortholog); negative regulation of smoothened signaling pathway (ortholog); negative regulation of TORC1 signaling (ortholog); PARTICIPATES IN adenosine signaling pathway; dopamine signaling pathway; dopamine signaling pathway via D1 family of receptors; ASSOCIATED WITH adrenal cortical adenoma (ortholog); biliary tract benign neoplasm (ortholog); brain ischemia (ortholog); FOUND IN cAMP-dependent protein kinase complex (ortholog); centrosome (ortholog); ciliary base (ortholog) NW_004955423 9630308 9747820 - 102004726 AGCD01023663;AGCD01023664;AGCD01023665;GBCB01073774;XM_005385166 XP_005385223 MODEL 8842102 protein-coding LOC102003853 myosin-3 ENCODES a protein that exhibits actin filament binding (ortholog); ATP hydrolysis activity (ortholog); microfilament motor activity (ortholog); INVOLVED IN ATP metabolic process (ortholog); skeletal muscle contraction (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); Arthrogryposis, Impaired Intellectual Development, and Seizures (ortholog); contractures, pterygia, and spondylocarpotarsal fusion syndrome 1A (ortholog); FOUND IN contractile muscle fiber (ortholog); myosin complex (ortholog) NW_004955467 6561609 6583228 + 102003853 AGCD01051416;AGCD01051417;GBDF01285104;XM_005399362 XP_005399419 MODEL 8929461 protein-coding Bub1b BUB1 mitotic checkpoint serine/threonine kinase B ENCODES a protein that exhibits protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN metaphase/anaphase transition of mitotic cell cycle (ortholog); mitotic spindle assembly checkpoint signaling (ortholog); protein localization to chromosome, centromeric region (ortholog); ASSOCIATED WITH Aneuploidy (ortholog); cerebral palsy (ortholog); colon carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); kinetochore (ortholog) NW_004955416 7105302 7159121 + 102015008 AGCD01016963;AGCD01016964;AGCD01016965;AGCD01016966;GBDF01053678;XM_005381216;XM_005381217;XM_005381218;XM_013512666;XM_013512667 XP_005381273;XP_005381274;XP_005381275;XP_013368120;XP_013368121 MODEL 8988744 protein-coding Rnase11 ribonuclease A family member 11 (inactive) NW_004955550 1386452 1387057 - 102026265 AGCD01072564;XM_005412142 XP_005412199 MODEL 39131458 protein-coding LITAFD LITAF domain containing 8975448 protein-coding LOC102012865 olfactory receptor 4C12-like NW_004955422 140434 143718 - 102012865 AGCD01022395;XM_005383937 XP_005383994 MODEL 8756917 protein-coding LOC102017776 uncharacterized LOC102017776 NW_004955420 25040524 25045906 + 102017776 AGCD01021341;GBCQ01153372;XM_005383415 XP_005383472 MODEL 8960421 protein-coding S100g S100 calcium binding protein G PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH gestational diabetes (ortholog); pre-eclampsia (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955519 1623695 1625164 - 102008138 AGCD01067902;XM_005409148;XM_013507002 XP_005409205;XP_013362456 MODEL 9017066 protein-coding Slc75a1 solute carrier family 75 member 1 ENCODES a protein that exhibits transmembrane transporter activity (ortholog); INVOLVED IN sodium-independent organic anion transport (ortholog); FOUND IN brush border membrane (ortholog); cytoplasmic vesicle membrane (ortholog); nuclear inner membrane (ortholog) NW_004955514 1813259 1815834 - 102006063 AGCD01067064;GBCQ01003222;GBCQ01003403;XM_013506759 XP_013362213 MODEL 8899518 pseudo LOC102023573 40S ribosomal protein SA pseudogene NW_004955468 5412271 5413102 - 102023573 AGCD01051969 MODEL 8955451 ncrna LOC102021848 uncharacterized LOC102021848 NW_004955407 40111586 40113235 - 102021848 AGCD01007838;GBDF01059141;XR_001231372 MODEL 8724293 protein-coding Sfn stratifin ENCODES a protein that exhibits identical protein binding (ortholog); phosphoprotein binding (ortholog); phosphoserine residue binding (ortholog); INVOLVED IN cAMP/PKA signal transduction (ortholog); establishment of skin barrier (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; mTOR signaling pathway; phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH endometrial carcinoma (ortholog); Esophageal Neoplasms (ortholog); esophagus squamous cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955452 6217519 6218481 + 102024419 AGCD01044097;GBDJ01006661;XM_005394883 XP_005394940 MODEL 8885161 pseudo LOC102027371 ubiquitin-conjugating enzyme E2 D2-like NW_004955737 7912 8335 - 102027371 AGCD01078237 MODEL 8815701 ncrna LOC102010866 uncharacterized LOC102010866 NW_004955454 15132762 15145904 + 102010866 AGCD01045485;AGCD01045486;GBDF01016961;XR_001236261;XR_001236262 MODEL 8711559 ncrna LOC102018904 uncharacterized LOC102018904 NW_004955411 12608628 12618065 + 102018904 AGCD01011851;GBDF01241604;XR_259934 MODEL 8761382 ncrna LOC102011240 uncharacterized LOC102011240 NW_004955435 21229107 21260847 + 102011240 AGCD01033474;GBDI01025489;XR_001234872;XR_261731;XR_261732 MODEL 9030647 protein-coding Prss41 serine protease 41 FOUND IN plasma membrane (ortholog) NW_004955442 14527717 14532265 - 102016754 AGCD01037824;XM_005391405 XP_005391462 MODEL 8849524 pseudo LOC102026374 signal recognition particle 9 kDa protein pseudogene NW_004955402 31567541 31567785 + 102026374 AGCD01000794 MODEL 8756002 pseudo LOC102030506 nascent polypeptide-associated complex subunit alpha pseudogene NW_004955464 11474174 11478068 - 102030506 AGCD01050155 MODEL 8936737 protein-coding LOC102028048 keratin, type I cuticular Ha3-II NW_004955451 15750925 15767526 - 102028048 AGCD01043636;AGCD01043637;XM_005394397;XM_005394398 XP_005394454;XP_005394455 MODEL 9015041 protein-coding Rab11a RAB11A, member RAS oncogene family ENCODES a protein that exhibits dynein light intermediate chain binding (ortholog); G protein activity (ortholog); GTP binding (ortholog); INVOLVED IN amyloid-beta clearance by transcytosis (ortholog); astral microtubule organization (ortholog); endocytic recycling (ortholog); PARTICIPATES IN autophagy pathway; eicosanoid signaling pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; ASSOCIATED WITH Chloracne (ortholog); intellectual disability (ortholog); microcephaly (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955450 9638761 9656291 - 102030586 AGCD01042594;GBCQ01006854;XM_005393706 XP_005393763 MODEL 8773969 ncrna LOC102011721 uncharacterized LOC102011721 NW_004955403 45969900 45972939 - 102011721 AGCD01002845;XR_259243 MODEL 39131477 protein-coding PCDHB7 protocadherin beta 7 8794738 pseudo LOC102012868 ubiquitin-like modifier-activating enzyme 1 pseudogene NW_004955494 8277150 8278221 - 102012868 AGCD01061582 MODEL 9010891 protein-coding Wdr75 WD repeat domain 75 INVOLVED IN positive regulation of rRNA processing (ortholog); positive regulation of transcription by RNA polymerase I (ortholog); ribosomal small subunit biogenesis (ortholog); FOUND IN nucleolus (ortholog); small-subunit processome (ortholog) NW_004955403 9352615 9383206 - 102008367 AGCD01001905;GBDJ01219698;XM_005373322 XP_005373379 MODEL 9010490 protein-coding Smim5 small integral membrane protein 5 NW_004955506 6595977 6607264 - 102014590 AGCD01065432;GBCQ01122299;XM_005407487;XM_013505978;XR_001231589 XP_005407544;XP_013361432 MODEL 10209618 ncrna LOC106149981 uncharacterized LOC106149981 NW_004955459 4786821 4823661 + 106149981 AGCD01048030;GBBH01099677;XR_001236485 MODEL 8924851 protein-coding LOC102007097 olfactory receptor 8B3-like NW_004955412 25257775 25259655 - 102007097 AGCD01013143;XM_005378418 XP_005378475 MODEL 8884781 protein-coding Socs7 suppressor of cytokine signaling 7 ENCODES a protein that exhibits phosphorylation-dependent protein binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN cerebral cortex radially oriented cell migration (ortholog); fat cell differentiation (ortholog); insulin receptor signaling pathway (ortholog); PARTICIPATES IN insulin signaling pathway; Jak-Stat signaling pathway; ASSOCIATED WITH ovarian carcinoma (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955451 13567377 13595685 + 102017528 AGCD01043490;GBBH01037090;GBDF01007859;XM_013519430 XP_013374884 MODEL 8785843 protein-coding Rgs1 regulator of G protein signaling 1 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); leukotriene signaling pathway (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); Arsenic Poisoning (ortholog); COVID-19 (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog) NW_004955406 30042354 30047172 + 102017535 AGCD01006357;GBDK01060690;XM_005375098 XP_005375155 MODEL 8707642 protein-coding LOC102028705 olfactory receptor 4F3/4F16/4F29-like NW_004955614 117232 118170 + 102028705 AGCD01077227;XM_005414974 XP_005415031 MODEL 8776302 protein-coding Plekhm2 pleckstrin homology and RUN domain containing M2 ENCODES a protein that exhibits kinesin binding (ortholog); INVOLVED IN Golgi organization (ortholog); lysosome localization (ortholog); natural killer cell mediated cytotoxicity (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955527 2438595 2453120 - 102010404 AGCD01069436;GBCE01096844;GBDJ01072717;XM_013507397 XP_013362851 MODEL 8711416 protein-coding Ppp1r10 protein phosphatase 1 regulatory subunit 10 ENCODES a protein that exhibits enzyme-substrate adaptor activity (ortholog); protein phosphatase 1 binding (ortholog); protein phosphatase inhibitor activity (ortholog); INVOLVED IN negative regulation of cardiac muscle cell apoptotic process (ortholog); negative regulation of mitotic DNA damage checkpoint (ortholog); negative regulation of transcription elongation by RNA polymerase II (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); chromosome, telomeric region (ortholog) NW_004955583 621380 635595 - 102016764 AGCD01075842;AGCD01075843;GBBH01092539;XM_005414310;XM_005414312;XM_005414313;XM_013509798 XP_005414367;XP_005414369;XP_005414370;XP_013365252 MODEL 8842683 protein-coding Trmt2a tRNA methyltransferase 2A ENCODES a protein that exhibits C-methyltransferase activity (ortholog); tRNA (uracil(54)-C5)-methyltransferase activity, S-adenosyl methionine-dependent (ortholog) NW_004955442 17993130 17997944 + 102023302 AGCD01037991;GBDF01088981;XM_005391731;XM_005391733 XP_005391788;XP_005391790 MODEL 8805071 protein-coding Rab11b RAB11B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN amyloid-beta clearance by transcytosis (ortholog); cellular response to acidic pH (ortholog); constitutive secretory pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); human immunodeficiency virus infectious disease (ortholog); Neurodevelopmental Disorder with Ataxic Gait, Absent Speech, and Decreased Cortical White Matter (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); phagocytic vesicle (ortholog) NW_004955563 1008267 1017315 - 102014839 AGCD01074102;AGCD01074103;AGCD01074104;GBBH01031204;GBCE01001173;XM_005413131 XP_005413188 MODEL 10243318 ncrna LOC106148237 uncharacterized LOC106148237 NW_004955418 11522479 11535835 - 106148237 AGCD01019004;GBDF01028275;XR_001233500 MODEL 8936107 protein-coding Timm29 translocase of inner mitochondrial membrane 29 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955495 2005929 2007238 + 102028873 AGCD01061744;AGCD01061745;GBCE01024245;GBCE01024246;XM_013505174 XP_013360628 MODEL 8802580 pseudo LOC102029085 60S ribosomal protein L30 pseudogene NW_004955420 14298100 14298471 - 102029085 AGCD01020940 MODEL 8964960 protein-coding Pth parathyroid hormone ENCODES a protein that exhibits hormone activity (ortholog); parathyroid hormone receptor binding (ortholog); peptide hormone receptor binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); bone mineralization (ortholog); calcium ion homeostasis (ortholog); PARTICIPATES IN parathyroid hormone signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); anemia (ortholog); Animal Disease Models (ortholog); FOUND IN extracellular region (ortholog) NW_004955414 28828389 28831417 - 102020327 AGCD01015689;GBDF01224218;XM_005380323 XP_005380380 MODEL 10175460 protein-coding LOC106147144 uncharacterized LOC106147144 NW_004955523 4315463 4317866 - 106147144 AGCD01068642;GBBH01074619;GBCE01083254;XM_013507113 XP_013362567 MODEL 8718430 protein-coding Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 ENCODES a protein that exhibits ADP phosphatase activity (ortholog); apyrase activity (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN ADP catabolic process (ortholog); cellular response to aluminum ion (ortholog); cellular response to interferon-alpha (ortholog); ASSOCIATED WITH demyelinating disease (ortholog); Experimental Autoimmune Encephalomyelitis (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN basement membrane (ortholog); basolateral plasma membrane (ortholog); caveola (ortholog) NW_004955507 2035918 2141327 + 102010183 AGCD01065577;AGCD01065578;AGCD01065579;AGCD01065580;GBDF01127217;XM_005407549;XM_005407551;XM_005407553;XM_013506151;XM_013506153 XP_005407606;XP_005407608;XP_005407610;XP_013361605;XP_013361607 MODEL 8789550 protein-coding Rnase12 ribonuclease A family member 12 (inactive) NW_004955550 1399335 1400310 - 102027235 AGCD01072565;XM_005412068 XP_005412125 MODEL 8915530 protein-coding Slc22a13 solute carrier family 22 member 13 ENCODES a protein that exhibits nicotinate transmembrane transporter activity (ortholog); urate transmembrane transporter activity (ortholog); INVOLVED IN negative regulation of fatty acid metabolic process (ortholog); nicotinate transport (ortholog); positive regulation of T cell mediated cytotoxicity directed against tumor cell target (ortholog); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; FOUND IN apical plasma membrane (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955421 5027568 5040000 - 102015731 AGCD01021710;GBCQ01007054;XM_005383735;XM_013513635 XP_005383792;XP_013369089 MODEL 9042421 ncrna LOC102009736 uncharacterized LOC102009736 NW_004955425 27635177 27653923 + 102009736 AGCD01025978;GBDJ01039065;XR_001234273;XR_261177 MODEL 39131346 protein-coding RAMP1 receptor activity modifying protein 1 9059369 pseudo LOC102015874 ELAV-like protein 2 NW_004955510 6263150 6264904 - 102015874 AGCD01066304 MODEL 39132516 snorna SNORA70 Small nucleolar RNA SNORA70 8856418 protein-coding Prss45 Putative serine protease 45 NW_004955420 25400359 25408044 + 102020808 AGCD01021357;GBDJ01287717;XM_005383425;XM_013513623 XP_005383482;XP_013369077 MODEL 8771718 ncrna LOC102005636 uncharacterized LOC102005636 NW_004955542 148238 153369 + 102005636 AGCD01071458;AGCD01071459;GBDF01025206;XR_264850 MODEL 8861892 protein-coding Rbm5 RNA binding motif protein 5 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN positive regulation of apoptotic process (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); spliceosomal complex assembly (ortholog); ASSOCIATED WITH spermatogenic failure 57 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955532 1929540 1957297 + 102024380 AGCD01070208;GBBH01063051;GBDF01081334;XM_013507632 XP_013363086 MODEL 8906727 protein-coding Slc7a1 solute carrier family 7 member 1 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); basic amino acid transmembrane transporter activity (ortholog); L-arginine transmembrane transporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); L-amino acid transport (ortholog); L-arginine import across plasma membrane (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Prostatic Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955431 16270648 16315280 + 102025151 AGCD01030377;GBDF01154497;XM_005387753;XM_013515883;XM_013515884 XP_005387810;XP_013371337;XP_013371338 MODEL 39133458 snrna U4 U4 spliceosomal RNA 8778712 protein-coding Selenoo selenoprotein O ENCODES a protein that exhibits AMPylase activity (ortholog); INVOLVED IN protein adenylylation (ortholog); FOUND IN chromosome (ortholog); mitochondrion (ortholog) NW_004955413 33235382 33253484 + 102025109 AGCD01014658;AGCD01014659;AGCD01014660;GBCE01098443;GBDF01287290;XM_005379554 XP_005379611 MODEL 9019771 pseudo LOC102006731 thymosin beta-10 pseudogene NW_004955402 41974553 41978585 + 102006731 AGCD01001028;XM_005372978 MODEL 8819718 protein-coding LOC102019333 28S ribosomal protein S18c, mitochondrial NW_004955552 805450 806106 - 102019333 AGCD01072740;XM_005412189 XP_005412246 MODEL 9060697 protein-coding Lix1 limb and CNS expressed 1 NW_004955418 15509586 15575059 + 102008727 AGCD01019106;AGCD01019107;GBBH01067993;XM_005382220;XM_013513047 XP_005382277;XP_013368501 MODEL 9031211 protein-coding Prkag1 protein kinase AMP-activated non-catalytic subunit gamma 1 ENCODES a protein that exhibits ADP binding (ortholog); AMP binding (ortholog); AMP-activated protein kinase activity (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); regulation of catalytic activity (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; vascular endothelial growth factor signaling pathway; FOUND IN nucleotide-activated protein kinase complex (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955500 7834550 7850412 - 102013849 AGCD01063952;AGCD01063953;AGCD01063954;GBDK01126945;XM_005406688;XM_013505682;XM_013505684;XM_013505685 XP_005406745;XP_013361136;XP_013361138;XP_013361139 MODEL 8973994 protein-coding Ppp1r11 protein phosphatase 1 regulatory inhibitor subunit 11 ENCODES a protein that exhibits phosphatase binding (ortholog); protein phosphatase inhibitor activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN defense response to Gram-positive bacterium (ortholog); negative regulation of cytokine production (ortholog); ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog) NW_004955583 198233 201312 + 102011259 AGCD01075802;GBDF01007793;XM_005414297 XP_005414354 MODEL 8745866 protein-coding Bub3 BUB3 mitotic checkpoint protein INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); protein localization to kinetochore (ortholog); regulation of chromosome segregation (ortholog); ASSOCIATED WITH Premature Aging (ortholog); FOUND IN kinetochore (ortholog); mitotic checkpoint complex (ortholog); nucleoplasm (ortholog) NW_004955477 1305937 1319330 + 102026634 AGCD01055504;GBDF01043135;XM_005401960;XM_005401961 XP_005402017;XP_005402018 MODEL 9023519 protein-coding LOC102010505 olfactory receptor 5A1 NW_004955511 3947526 3953543 + 102010505 AGCD01066484;XM_005408061 XP_005408118 MODEL 8902550 protein-coding Pdzd2 PDZ domain containing 2 ASSOCIATED WITH lissencephaly (ortholog); FOUND IN anchoring junction (ortholog); apical part of cell (ortholog); cell-cell junction (ortholog) NW_004955426 17600722 17974916 + 102020587 AGCD01026505;AGCD01026506;AGCD01026507;AGCD01026508;AGCD01026509;GBDK01131281;XM_005386151;XM_005386153;XM_013514972;XM_013514973 XP_005386208;XP_005386210;XP_013370426;XP_013370427 MODEL 9027569 pseudo LOC102026375 oral-facial-digital syndrome 1 protein-like NW_004955449 11724306 11737522 - 102026375 AGCD01042092 MODEL 8751568 ncrna LOC102030507 uncharacterized LOC102030507 NW_004955412 774398 845792 + 102030507 AGCD01012497;AGCD01012498;AGCD01012499;AGCD01012500;AGCD01012501;AGCD01012502;AGCD01012503;AGCD01012504;GBDI01097839;XR_259958;XR_259959 MODEL 8926501 pseudo LOC102024565 cryptochrome-1 pseudogene NW_004955480 6962604 6964523 - 102024565 AGCD01056693 MODEL 8840232 ncrna LOC102021851 uncharacterized LOC102021851 NW_004955457 14849296 14857146 - 102021851 AGCD01047085;GBDJ01370680;XR_262954 MODEL 9048590 protein-coding LOC102012872 olfactory receptor 1I1 NW_004955495 8171204 8172145 - 102012872 AGCD01062187;XM_005406096 XP_005406153 MODEL 8939356 protein-coding LOC102003857 mediator of RNA polymerase II transcription subunit 6-like NW_004955413 23892506 23893445 - 102003857 AGCD01014339;XM_005379202;XM_013511365 XP_005379259;XP_013366819 MODEL 9030220 ncrna LOC102027372 uncharacterized LOC102027372 NW_004955403 45019746 45024497 + 102027372 AGCD01002809;GBCQ01061463;XR_259238 MODEL 8891653 protein-coding Pdzd4 PDZ domain containing 4 ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); intellectual disability (ortholog) NW_004955580 512963 535911 - 102019753 AGCD01075607;AGCD01075608;GBDJ01144360;XM_005414155;XM_005414156;XM_005414157 XP_005414212;XP_005414213;XP_005414214 MODEL 8909796 pseudo LOC102018905 60S ribosomal protein L7-like 1 pseudogene NW_004955465 3670775 3671551 - 102018905 AGCD01050388 MODEL 9039610 protein-coding LOC102011242 triggering receptor expressed on myeloid cells 1 NW_004955437 7849199 7863437 - 102011242 AGCD01034469;AGCD01034470;GBDJ01061958;XM_005389685;XM_013517118 XP_005389742;XP_013372572 MODEL 8795757 pseudo LOC102017778 E3 ubiquitin-protein ligase RING2 pseudogene NW_004955421 538591 539793 - 102017778 AGCD01021566 MODEL 8860728 protein-coding LOC102008590 protocadherin gamma-B7-like NW_004957438 6 1466 - 102008590 AGCD01080834;GBCB01007960;XM_005415231 XP_005415288 MODEL 8919435 protein-coding LOC102029087 uncharacterized LOC102029087 NW_004955420 21272348 21310040 - 102029087 AGCD01021134;GBDF01237353;XM_005383601 XP_005383658 MODEL 10110086 ncrna LOC106148238 uncharacterized LOC106148238 NW_004955418 416210 434894 + 106148238 AGCD01018675;GBDF01076397;XR_001233502;XR_001233503;XR_001233504 MODEL 9017900 pseudo LOC102026010 40S ribosomal protein S20 pseudogene NW_004955484 9634928 9635406 + 102026010 AGCD01058424 MODEL 8824923 protein-coding S100p S100 calcium binding protein P ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN endothelial cell migration (ortholog); ASSOCIATED WITH Mouth Neoplasms (ortholog); polycystic ovary syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955514 3704002 3707098 - 102019423 AGCD01067107;AGCD01067108;GBDF01193973;GBDJ01017243;XM_005408812 XP_005408869 MODEL 8947218 ncrna LOC102019334 uncharacterized LOC102019334 NW_004955555 524438 543781 - 102019334 AGCD01073035;AGCD01073036;GBDF01250812;XR_001232299;XR_264950;XR_264952 MODEL 9019866 pseudo LOC102009737 nucleophosmin pseudogene NW_004955503 3206385 3225585 - 102009737 AGCD01064619 MODEL 8704269 protein-coding Rnase13 ribonuclease A family member 13 (inactive) NW_004955550 1786550 1800191 - 102005753 AGCD01072588;GBCB01100056;XM_005412091;XM_005412093;XM_005412094 XP_005412148;XP_005412150;XP_005412151 MODEL 8951091 protein-coding LOC102023577 olfactory receptor 52E1-like NW_004955414 20762285 20763223 - 102023577 AGCD01015389;XM_005380066 XP_005380123 MODEL 8893210 protein-coding Pced1a PC-esterase domain containing 1A NW_004955415 13786243 13792914 - 102019497 AGCD01016269;GBDK01324208;XM_005380768;XM_013512309;XM_013512311 XP_005380825;XP_013367763;XP_013367765 MODEL 8751788 protein-coding Slc22a14 solute carrier family 22 member 14 ENCODES a protein that exhibits riboflavin transmembrane transporter activity (ortholog); INVOLVED IN flagellated sperm motility (ortholog); sperm capacitation (ortholog); FOUND IN mitochondrial inner membrane (ortholog); sperm principal piece (ortholog) NW_004955421 5009560 5023833 - 102014789 AGCD01021710;GBDF01124260;XM_005383731;XM_005383732;XM_005383733;XM_005383734;XM_013513634 XP_005383788;XP_005383789;XP_005383790;XP_005383791;XP_013369088 MODEL 9016547 protein-coding Tprkb TP53RK binding protein ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN tRNA threonylcarbamoyladenosine modification (ortholog); ASSOCIATED WITH Galloway-Mowat syndrome (ortholog); Galloway-Mowat syndrome 5 (ortholog); nephrotic syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); EKC/KEOPS complex (ortholog) NW_004955424 11961994 11969610 - 102010066 AGCD01024584;GBDI01179923;XM_005385539;XM_005385540;XM_005385541;XM_005385542;XM_005385544 XP_005385596;XP_005385597;XP_005385598;XP_005385599;XP_005385601 MODEL 10341850 ncrna LOC106149982 uncharacterized LOC106149982 NW_004955459 581712 585247 + 106149982 AGCD01047940;GBCB01122068;XR_001236486 MODEL 8964150 pseudo LOC102010868 transformer-2 protein homolog alpha pseudogene NW_004955406 19929201 19930073 - 102010868 AGCD01006095 MODEL 8712506 ncrna LOC102007099 uncharacterized LOC102007099 NW_004955413 26714 54739 + 102007099 AGCD01013432;AGCD01013433;AGCD01013434;AGCD01013435;GBDF01192955;XR_001232930;XR_260037 MODEL 8761351 protein-coding Prkag2 protein kinase AMP-activated non-catalytic subunit gamma 2 ENCODES a protein that exhibits ADP binding (ortholog); AMP binding (ortholog); AMP-activated protein kinase activity (ortholog); INVOLVED IN glycogen metabolic process (ortholog); intracellular signal transduction (ortholog); regulation of catalytic activity (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; ASSOCIATED WITH arrhythmogenic right ventricular dysplasia 9 (ortholog); cardiomyopathy (ortholog); congestive heart failure (ortholog); FOUND IN nucleotide-activated protein kinase complex (ortholog) NW_004955491 5852534 6048820 - 102009726 AGCD01060506;AGCD01060507;AGCD01060508;AGCD01060509;AGCD01060510;AGCD01060511;AGCD01060512;AGCD01060513;GBDF01120908;XM_013504627 XP_013360081 MODEL 8879454 protein-coding Rgs10 regulator of G protein signaling 10 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN G protein-coupled acetylcholine receptor signaling pathway (ortholog); positive regulation of GTPase activity (ortholog); response to amphetamine (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Experimental Seizures (ortholog); opioid abuse (ortholog); FOUND IN axon terminus (ortholog); cytosol (ortholog); dendritic spine (ortholog) NW_004955551 318229 348578 - 102009228 AGCD01072654;GBDI01084285;XM_005412158;XM_013508591 XP_005412215;XP_013364045 MODEL 8931510 protein-coding Plekhm3 pleckstrin homology domain containing M3 INVOLVED IN myoblast differentiation (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955457 7065443 7239663 + 102008701 AGCD01046868;AGCD01046869;AGCD01046870;AGCD01046871;AGCD01046872;AGCD01046873;AGCD01046874;GBBH01021390;XM_005396971;XM_005396973;XM_005396974 XP_005397028;XP_005397030;XP_005397031 MODEL 8762067 protein-coding Trmt44 tRNA methyltransferase 44 homolog NW_004955514 2618671 2636822 - 102008970 AGCD01067085;GBBH01206510;XM_005408776 XP_005408833 MODEL 8987757 protein-coding Timm44 translocase of inner mitochondrial membrane 44 ENCODES a protein that exhibits enzyme binding (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN cardiac muscle cell differentiation (ortholog); intracellular protein transport (ortholog); response to 3,3',5-triiodo-L-thyronine (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH diabetic retinopathy (ortholog); Experimental Diabetes Mellitus (ortholog); Neointima (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955563 1328374 1342011 + 102018138 AGCD01074140;AGCD01074141;GBDJ01080690;XM_005413138 XP_005413195 MODEL 9045456 protein-coding Rbm6 RNA binding motif protein 6 FOUND IN nucleus (ortholog) NW_004955532 1811794 1914551 + 102023074 AGCD01070200;AGCD01070201;AGCD01070202;AGCD01070203;AGCD01070204;AGCD01070205;GBDF01050658;XM_005410236;XM_013507616;XM_013507617 XP_005410293;XP_013363070;XP_013363071 MODEL 10388040 ncrna LOC106147145 uncharacterized LOC106147145 NW_004955523 229481 253714 - 106147145 AGCD01068438;AGCD01068439;AGCD01068440;GBBH01112506;XR_001231913;XR_001231914 MODEL 8918674 pseudo LOC102028049 10 kDa heat shock protein, mitochondrial pseudogene NW_004955451 16708368 16708986 + 102028049 AGCD01043699;XM_005394490 MODEL 8788630 protein-coding Pth1r parathyroid hormone 1 receptor ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); parathyroid hormone receptor activity (ortholog); peptide hormone binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); bone mineralization (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; G protein mediated signaling pathway via Galphas family; parathyroid hormone signaling pathway; ASSOCIATED WITH brachydactyly type E1 (ortholog); chondrodysplasia Blomstrand type (ortholog); connective tissue disease (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog) NW_004955420 25274269 25291984 - 102019506 AGCD01021348;GBDF01221234;XM_013513585 XP_013369039 MODEL 8708424 protein-coding Wdr76 WD repeat domain 76 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN DNA damage response (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN heterochromatin (ortholog); nucleus (ortholog); site of DNA damage (ortholog) NW_004955416 10280112 10337963 + 102015196 AGCD01017129;AGCD01017130;AGCD01017131;AGCD01017132;AGCD01017133;AGCD01017134;AGCD01017135;GBDF01163138;XM_005381415;XM_013512615;XM_013512616;XM_013512617 XP_005381472;XP_013368069;XP_013368070;XP_013368071 MODEL 9049067 protein-coding Smim7 small integral membrane protein 7 NW_004955773 11432 22562 - 102008368 AGCD01078319;GBCB01023831;XM_005415106 XP_005415163 MODEL 8784296 ncrna LOC102011725 uncharacterized LOC102011725 NW_004955404 11149721 11163056 - 102011725 AGCD01003414;AGCD01003415;GBDF01148811;XR_259301 MODEL 8755734 protein-coding Bud13 BUD13 spliceosome associated protein INVOLVED IN mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Achalasia-Progeroid Syndrome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); spliceosomal complex (ortholog) NW_004955412 18095069 18113386 - 102020228 AGCD01012924;AGCD01012925;AGCD01012926;GBDF01156360;XM_013511204;XM_013511205 XP_013366658;XP_013366659 MODEL 8905162 protein-coding LOC102017785 60S acidic ribosomal protein P0-like NW_004955494 2559510 2560550 + 102017785 AGCD01061440;GBDF01135760;XM_013504925 XP_013360379 MODEL 9028273 protein-coding Sod1 superoxide dismutase 1 ENCODES a protein that exhibits copper ion binding (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN action potential initiation (ortholog); anterograde axonal transport (ortholog); auditory receptor cell stereocilium organization (ortholog); PARTICIPATES IN amyotrophic lateral sclerosis pathway; forkhead class A signaling pathway; hypertension pathway; ASSOCIATED WITH acute kidney failure (ortholog); alcohol use disorder (ortholog); alcohol-associated liver disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955407 31261451 31267657 + 102014981 AGCD01007644;AGCD01007645;GBDF01011265;XM_013504103 XP_013359557 MODEL 9033653 protein-coding LOC102005637 cytochrome c oxidase subunit 8C, mitochondrial FOUND IN mitochondrion (ortholog) NW_004955438 15480509 15481812 + 102005637 AGCD01035370;GBDF01049097;XM_005390345 XP_005390402 MODEL 9003855 ncrna LOC102009738 uncharacterized LOC102009738 NW_004955504 990784 1006063 + 102009738 AGCD01064834;GBDI01386594;XR_001231555;XR_001231556;XR_001231557;XR_001231558;XR_001231559;XR_001231560;XR_001231561;XR_001231562;XR_001231563;XR_001231564;XR_001231565;XR_001231566;XR_001231567;XR_001231568;XR_264274;XR_264276 MODEL 8917757 protein-coding LOC102024566 chromosome unknown open reading frame, human C17orf75 INVOLVED IN intracellular protein transport (ortholog); vesicle tethering to Golgi (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytosol (ortholog); trans-Golgi network (ortholog) NW_004955481 7281735 7293246 - 102024566 AGCD01057058;AGCD01057059;GBBH01001483;XM_005402816;XM_013503453 XP_005402873;XP_013358907 MODEL 8833451 protein-coding S100pbp S100P binding protein ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog) NW_004955452 11078170 11114061 + 102027937 AGCD01044323;AGCD01044324;AGCD01044325;AGCD01044326;AGCD01044327;GBDK01169419;XM_005395086;XM_005395087;XM_005395088;XM_005395089;XM_005395091;XM_005395092;XM_005395093;XM_013519554;XM_013519555 XP_005395143;XP_005395144;XP_005395145;XP_005395146;XP_005395148;XP_005395149;XP_005395150;XP_013375008;XP_013375009 MODEL 8768729 protein-coding Slc7a10 solute carrier family 7 member 10 ENCODES a protein that exhibits neutral L-amino acid transmembrane transporter activity (ortholog); INVOLVED IN D-alanine transmembrane transport (ortholog); D-serine transmembrane transport (ortholog); glycine transport (ortholog); FOUND IN apical dendrite (ortholog); neuronal cell body (ortholog); plasma membrane (ortholog) NW_004955468 2968720 2984101 - 102025896 AGCD01051849;GBDI01219332;XM_005399981;XM_005399982 XP_005400038;XP_005400039 MODEL 8748975 protein-coding Rab11fip1 RAB11 family interacting protein 1 INVOLVED IN negative regulation of adiponectin secretion (ortholog); FOUND IN cytoplasmic vesicle (ortholog); recycling endosome (ortholog) NW_004955463 13565956 13600016 - 102013808 AGCD01049872;AGCD01049873;AGCD01049874;AGCD01049875;GBCE01186560;XM_005398418;XM_005398419 XP_005398475;XP_005398476 MODEL 8855019 protein-coding Selenop selenoprotein P ENCODES a protein that exhibits selenium binding (ortholog); INVOLVED IN brain development (ortholog); locomotory behavior (ortholog); post-embryonic development (ortholog); ASSOCIATED WITH adenoma (ortholog); Animal Mammary Neoplasms (ortholog); Cadmium Poisoning (ortholog); FOUND IN extracellular region (ortholog) NW_004955426 26951003 26961839 - 102029203 AGCD01026791;GBCE01003987;XM_005386255;XM_013514989 XP_005386312;XP_013370443 MODEL 8845963 protein-coding Prss48 serine protease 48 NW_004955471 5856588 5872812 + 102022911 AGCD01053114;GBDF01046234;XM_013522888 XP_013378342 MODEL 8741443 pseudo LOC102006733 spindle and kinetochore-associated protein 2-like NW_004955403 19423695 19424310 - 102006733 AGCD01002125 MODEL 8877618 protein-coding Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 ENCODES a protein that exhibits ADP phosphatase activity (ortholog); apyrase activity (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN cellular response to interferon-alpha (ortholog); cellular response to interleukin-6 (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); high grade glioma (ortholog); FOUND IN basement membrane (ortholog); cell body (ortholog); cell projection membrane (ortholog) NW_004955513 5070050 5075098 - 102029650 AGCD01066953;GBDI01356592;XM_005408572;XM_005408574 XP_005408629;XP_005408631 MODEL 8712092 ncrna LOC102015875 uncharacterized LOC102015875 NW_004955429 21522975 21526531 + 102015875 AGCD01029005;GBDF01223359;XR_261378 MODEL 9064795 protein-coding S100z S100 calcium binding protein Z ENCODES a protein that exhibits calcium ion binding (ortholog); protein homodimerization activity (ortholog) NW_004955425 24014039 24022842 - 102019932 AGCD01025872;GBCE01049545;XM_005386034;XM_005386036;XM_005386037;XM_013514756;XM_013514757;XM_013514758;XM_013514759;XM_013514760;XM_013514761;XM_013514762 XP_005386091;XP_005386093;XP_005386094;XP_013370210;XP_013370211;XP_013370212;XP_013370213;XP_013370214;XP_013370215;XP_013370216 MODEL 8807676 protein-coding Ppp1r12a protein phosphatase 1 regulatory subunit 12A ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); enzyme inhibitor activity (ortholog); phosphatase regulator activity (ortholog); INVOLVED IN cellular response to xenobiotic stimulus (ortholog); centrosome cycle (ortholog); mitotic cell cycle (ortholog); ASSOCIATED WITH genetic disease (ortholog); GENITOURINARY AND/OR BRAIN MALFORMATION SYNDROME (ortholog); FOUND IN A band (ortholog); actin cytoskeleton (ortholog); centrosome (ortholog) NW_004955405 18594191 18727345 - 102019767 AGCD01005022;AGCD01005023;AGCD01005024;AGCD01005025;GBDJ01073959;XM_005374361;XM_005374363;XM_013517866;XM_013517875;XM_013517877;XM_013517885;XM_013517896;XM_013517904;XM_013517907 XP_005374418;XP_005374420;XP_013373320;XP_013373329;XP_013373331;XP_013373339;XP_013373350;XP_013373358;XP_013373361 MODEL 39132537 snorna SNORA70 Small nucleolar RNA SNORA70 9048878 protein-coding Sfpq splicing factor proline and glutamine rich ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); alternative mRNA splicing, via spliceosome (ortholog); chromatin remodeling (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); human immunodeficiency virus infectious disease (ortholog); skin disease (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nuclear matrix (ortholog) NW_004955452 13267968 13283823 - 102022877 AGCD01044397;AGCD01044398;GBBH01000997;GBCQ01037138;XM_005395311 XP_005395368 MODEL 8714840 protein-coding Timm50 translocase of inner mitochondrial membrane 50 ENCODES a protein that exhibits cysteine-type endopeptidase activator activity (ortholog); interleukin-2 receptor binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN mitochondrial membrane organization (ortholog); protein import into mitochondrial matrix (ortholog); release of cytochrome c from mitochondria (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH 3-methylglutaconic aciduria type 9 (ortholog); genetic disease (ortholog); Mitochondrial Encephalopathy (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); mitochondrial inner membrane (ortholog) NW_004955468 85681 94300 - 102020644 AGCD01051681;GBDF01010510;XM_005399767 XP_005399824 MODEL 8767551 pseudo LOC102028706 olfactory receptor 2M2-like NW_004955630 22390 23311 - 102028706 AGCD01077520 MODEL 8983221 protein-coding LOC102019337 zinc finger protein 112 NW_004955555 1654784 1704689 - 102019337 AGCD01073096;AGCD01073097;GBCE01005259;GBDK01219670;XM_013508735 XP_013364189 MODEL 8951934 pseudo LOC102026377 lys-63-specific deubiquitinase BRCC36 pseudogene NW_004955402 24870737 24872641 - 102026377 AGCD01000650;XM_005373165 MODEL 9032656 ncrna LOC102023578 uncharacterized LOC102023578 NW_004955470 9804279 9808744 + 102023578 AGCD01052842;XR_263480;XR_263481 MODEL 8804190 pseudo LOC102012875 uncharacterized LOC102012875 NW_004955497 3366221 3391937 + 102012875 AGCD01062536;AGCD01062537;AGCD01062538;AGCD01062539 MODEL 8808503 protein-coding LOC102021855 olfactory receptor 6C3-like NW_004955458 2816076 2817020 - 102021855 AGCD01047245;XM_005397502 XP_005397559 MODEL 8883369 protein-coding LOC102027373 RNA-binding protein 45-like NW_004956780 799 3127 - 102027373 AGCD01080152;GBBH01005454;GBDI01222349;XM_005415212 XP_005415269 MODEL 8840820 protein-coding Pced1b PC-esterase domain containing 1B NW_004955500 6247689 6280542 + 102014689 AGCD01063874;AGCD01063875;GBBH01176407;XM_005406607;XM_013505706;XM_013505707;XM_013505708;XM_013505709;XM_013505710;XM_013505711;XM_013505712;XM_013505713 XP_005406664;XP_013361160;XP_013361161;XP_013361162;XP_013361163;XP_013361164;XP_013361165;XP_013361166;XP_013361167 MODEL 8882475 protein-coding Tprn taperin ENCODES a protein that exhibits actin binding (ortholog); protein phosphatase 1 binding (ortholog); protein phosphatase binding (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); sensory perception of sound (ortholog); stereocilium maintenance (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 79 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); microvillus (ortholog); nucleoplasm (ortholog) NW_004955513 5196871 5205945 - 102030460 AGCD01066961;AGCD01066962;GBBH01187440;GBCB01087279;XM_005408661 XP_005408718 MODEL 9042876 ncrna LOC102003860 uncharacterized LOC102003860 NW_004955470 10705641 10717884 + 102003860 AGCD01052875;GBCE01089457;XR_263497 MODEL 8769646 pseudo LOC102011246 rRNA-processing protein FCF1 homolog pseudogene NW_004955438 12170534 12171127 - 102011246 AGCD01035254 MODEL 8949240 protein-coding Pdzd7 PDZ domain containing 7 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN auditory receptor cell development (ortholog); auditory receptor cell stereocilium organization (ortholog); detection of mechanical stimulus involved in sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 57 (ortholog); fundus dystrophy (ortholog); FOUND IN cilium (ortholog); nucleus (ortholog); stereocilia ankle link (ortholog) NW_004955485 9166721 9183129 + 102004167 AGCD01058750;GBCE01166839;GBDJ01214323;XM_013504049;XM_013504050;XM_013504051;XR_001231080 XP_013359503;XP_013359504;XP_013359505 MODEL 8722402 protein-coding Prkag3 protein kinase AMP-activated non-catalytic subunit gamma 3 ENCODES a protein that exhibits AMP-activated protein kinase activity (ortholog); protein kinase binding (ortholog); protein kinase regulator activity (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); negative regulation of glycogen biosynthetic process (ortholog); regulation of glycolytic process (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; ASSOCIATED WITH carbohydrate metabolic disorder (ortholog); lipid metabolism disorder (ortholog); FOUND IN nucleotide-activated protein kinase complex (ortholog) NW_004955453 14584405 14594112 + 102003940 AGCD01044871;GBDF01176866;XM_005395623;XM_005395624;XM_005395625;XM_005395626;XM_013519792;XM_013519793;XM_013519794;XM_013519795 XP_005395680;XP_005395681;XP_005395682;XP_005395683;XP_013375246;XP_013375247;XP_013375248;XP_013375249 MODEL 39131535 protein-coding RAMP2 receptor activity modifying protein 2 8881600 protein-coding Slc7a11 solute carrier family 7 member 11 ENCODES a protein that exhibits cystine:glutamate antiporter activity (ortholog); L-kynurenine transmembrane transporter activity (ortholog); leak channel activity (ortholog); INVOLVED IN adult behavior (ortholog); amino acid import across plasma membrane (ortholog); brain development (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); Alcohol-Related Disorders (ortholog); contact dermatitis (ortholog); FOUND IN apical part of cell (ortholog); astrocyte projection (ortholog); brush border membrane (ortholog) NW_004955428 5238460 5309085 + 102024825 AGCD01027705;AGCD01027706;GBDK01303653;XM_005386709;XM_013515245 XP_005386766;XP_013370699 MODEL 8956287 pseudo LOC102029088 keratin, type II cytoskeletal 8-like NW_004955421 7532700 7541993 - 102029088 AGCD01021775 MODEL 8937573 protein-coding Rbm7 RNA binding motif protein 7 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); pre-mRNA intronic binding (ortholog); RNA binding (ortholog); INVOLVED IN snRNA catabolic process (ortholog); ASSOCIATED WITH lung non-small cell carcinoma (ortholog); FOUND IN nuclear exosome targeting complex (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955412 15996206 16004177 + 102012747 AGCD01012888;GBDF01082376;XM_005378157;XM_005378158 XP_005378214;XP_005378215 MODEL 8750168 protein-coding Rab11fip2 RAB11 family interacting protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); protein kinase binding (ortholog); INVOLVED IN establishment of cell polarity (ortholog); insulin secretion involved in cellular response to glucose stimulus (ortholog); phagocytosis (ortholog); PARTICIPATES IN vasopressin signaling pathway; vasopressin signaling pathway via receptor type 2; FOUND IN endosome (ortholog); phagocytic cup (ortholog) NW_004955431 22637605 22674107 - 102030657 AGCD01030516;GBBH01043971;GBCB01073562;XM_005387876 XP_005387933 MODEL 8881152 protein-coding LOC102008593 cholesterol 7-alpha-monooxygenase ENCODES a protein that exhibits 24S-hydroxycholesterol 7-alpha-hydroxylase activity (ortholog); cholesterol 7-alpha-monooxygenase activity (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); bile acid metabolic process (ortholog); cellular response to cholesterol (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; bile acid signaling pathway; cerebrotendinous xanthomatosis pathway; ASSOCIATED WITH alcoholic hepatitis (ortholog); autism spectrum disorder (ortholog); cholestasis (ortholog) NW_004955454 17035105 17078854 - 102008593 AGCD01045541;AGCD01045542;AGCD01045543;AGCD01045544;GBBH01001699;GBCQ01008759;XM_013520108 XP_013375562 MODEL 8913163 pseudo LOC102030510 putative olfactory receptor 10D4 NW_004955412 24809855 24810788 - 102030510 AGCD01013126 MODEL 10161164 ncrna LOC106148239 uncharacterized LOC106148239 NW_004955418 709149 738909 - 106148239 AGCD01018689;AGCD01018690;GBDI01231635;XR_001233505 MODEL 8994646 protein-coding Slc22a15 solute carrier family 22 member 15 ENCODES a protein that exhibits amino-acid betaine transmembrane transporter activity (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955435 19183832 19260412 + 102028228 AGCD01033422;AGCD01033423;AGCD01033424;GBBH01127158;GBCE01159916;XM_005389035 XP_005389092 MODEL 8937518 protein-coding LOC102010870 keratin-associated protein 20-2-like NW_004955407 30265855 30266145 + 102010870 AGCD01007631;AGCD01007632;XM_005375652 XP_005375709 MODEL 8755730 ncrna LOC102019338 uncharacterized LOC102019338 NW_004955570 1719054 1724037 + 102019338 AGCD01074826;XR_265047 MODEL 10346798 ncrna LOC106149983 uncharacterized LOC106149983 NW_004955459 3077389 3092788 + 106149983 AGCD01048007;XR_001236487 MODEL 8893761 pseudo LOC102009739 ubiquitin-conjugating enzyme E2 E3 pseudogene NW_004955427 22033843 22034577 - 102009739 AGCD01027464 MODEL 8737937 ncrna LOC102005638 uncharacterized LOC102005638 NW_004955439 17644083 17645810 + 102005638 AGCD01036042;GBDF01110804;XR_001235185;XR_261994 MODEL 9008981 protein-coding Lix1l limb and CNS expressed 1 like INVOLVED IN actin cytoskeleton organization (ortholog); gene expression (ortholog); mitral valve development (ortholog) NW_004955568 136482 158531 + 102020853 AGCD01074503;AGCD01074504;GBBH01166392;GBDI01181571;XM_013509354 XP_013364808 MODEL 8721093 ncrna LOC102010512 uncharacterized LOC102010512 NW_004955432 10654891 10664188 - 102010512 AGCD01030936;GBCE01078510;XR_001234668;XR_261522 MODEL 9042344 protein-coding Rgs11 regulator of G protein signaling 11 ENCODES a protein that exhibits G-protein beta-subunit binding (ortholog); ASSOCIATED WITH morphine dependence (ortholog); FOUND IN cell tip (ortholog); dendrite (ortholog); dendrite terminus (ortholog) NW_004955442 16905982 16914772 + 102004206 AGCD01037922;AGCD01037923;GBDF01207822;XM_005391662;XM_005391663;XM_005391664;XM_005391665;XM_005391666 XP_005391719;XP_005391720;XP_005391721;XP_005391722;XP_005391723 MODEL 8914164 protein-coding Trmt5 tRNA methyltransferase 5 INVOLVED IN mitochondrial tRNA methylation (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 26 (ortholog); genetic disease (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955466 8679795 8690203 + 102014123 AGCD01050997;GBBH01052220;XM_005399167;XM_013521928;XM_013521929;XM_013521930;XM_013521931 XP_005399224;XP_013377382;XP_013377383;XP_013377384;XP_013377385 MODEL 8850330 ncrna LOC102026011 uncharacterized LOC102026011 NW_004955489 2649612 2673929 + 102026011 AGCD01059875;GBDJ01247666;XR_264016 MODEL 8986652 protein-coding LOC102027374 keratin-associated protein 17-1 NW_004955451 15725445 15726702 - 102027374 AGCD01043635;XM_005394395 XP_005394452 MODEL 39133461 snrna U4 U4 spliceosomal RNA 8903718 protein-coding Rnase6 ribonuclease A family member 6 ENCODES a protein that exhibits RNA nuclease activity (ortholog); INVOLVED IN antibacterial humoral response (ortholog); antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); defense response to Gram-negative bacterium (ortholog); ASSOCIATED WITH liver disease (ortholog); toxic encephalopathy (ortholog); FOUND IN cytoplasmic vesicle (ortholog); extracellular region (ortholog) NW_004955550 1687068 1688160 - 102029125 AGCD01072584;GBCE01001207;XM_005412074 XP_005412131 MODEL 8786420 protein-coding Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 ENCODES a protein that exhibits ADP phosphatase activity (ortholog); apyrase activity (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN nucleoside diphosphate catabolic process (ortholog); nucleoside triphosphate catabolic process (ortholog); ribonucleoside diphosphate catabolic process (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN plasma membrane (ortholog) NW_004955420 29445252 29471024 - 102012656 AGCD01021502;AGCD01021503;AGCD01021504;GBCQ01152313;GBDF01160505;XM_005383579 XP_005383636 MODEL 9013697 protein-coding Wdr77 WD repeat domain 77 ENCODES a protein that exhibits methyl-CpG binding (ortholog); transcription coactivator activity (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); negative regulation of epithelial cell proliferation involved in prostate gland development (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN Cul4B-RING E3 ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955435 14929202 14940439 - 102027005 AGCD01033258;GBDF01183170;XM_005388949;XM_013516496 XP_005389006;XP_013371950 MODEL 8851519 ncrna LOC102007102 uncharacterized LOC102007102 NW_004955468 7023137 7030091 + 102007102 AGCD01051993;GBDF01224168;XR_263396 MODEL 8738775 protein-coding LOC102029089 prolactin-inducible protein homolog NW_004955494 538629 544147 - 102029089 AGCD01061380;GBBH01186650;XM_005405375 XP_005405432 MODEL 9061194 pseudo LOC102028707 AN1-type zinc finger protein 6 pseudogene NW_004955747 13383 14415 - 102028707 AGCD01078257;XM_005415087;XM_005415088;XM_005415089 MODEL 8765147 ncrna LOC102017793 uncharacterized LOC102017793 NW_004955499 5632515 5635424 - 102017793 AGCD01063523;GBCQ01045824;XR_264219 MODEL 9001062 protein-coding LOC102018913 uncharacterized protein C12orf71 homolog NW_004955413 6921977 6923948 - 102018913 AGCD01013784;GBDF01150110;XM_005379614 XP_005379671 MODEL 8718146 pseudo LOC102026379 inositol polyphosphate multikinase pseudogene NW_004955613 60321 81299 - 102026379 AGCD01077193;AGCD01077194;AGCD01077195 MODEL 9006315 pseudo LOC102012878 mitochondrial import inner membrane translocase subunit TIM14 pseudogene NW_004955426 25828943 25829298 - 102012878 AGCD01026728 MODEL 8923000 protein-coding Sod2 superoxide dismutase 2 ENCODES a protein that exhibits DNA binding (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN acetylcholine-mediated vasodilation involved in regulation of systemic arterial blood pressure (ortholog); apoptotic mitochondrial changes (ortholog); cellular response to ethanol (ortholog); PARTICIPATES IN hypertension pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acute Coronary Syndrome (ortholog); acute kidney tubular necrosis (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog) NW_004955439 21209101 21223538 + 102018438 AGCD01036146;AGCD01036147;AGCD01036148;GBBH01000815;XM_005390723 XP_005390780 MODEL 8898755 pseudo LOC102028050 transducin beta-like protein 2 NW_004955403 11767918 11857744 - 102028050 AGCD01001958;AGCD01001959 MODEL 9015813 protein-coding Pth2 parathyroid hormone 2 NW_004955559 1409966 1414881 + 102017514 AGCD01073644;GBDF01104303;XM_005412886;XM_013509049 XP_005412943;XP_013364503 MODEL 9027401 pseudo LOC102015884 heterogeneous nuclear ribonucleoprotein M-like NW_004955434 16085495 16089791 - 102015884 AGCD01032511 MODEL 8876553 ncrna LOC102012879 uncharacterized LOC102012879 NW_004955504 2373902 2394467 + 102012879 AGCD01064857;AGCD01064858;GBCB01109961;XR_001231540;XR_264288 MODEL 8871233 pseudo LOC102011727 GTP:AMP phosphotransferase AK3, mitochondrial-like NW_004955404 141224 156690 - 102011727 AGCD01003197 MODEL 8728704 protein-coding Rbm8a RNA binding motif protein 8A ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN mRNA export from nucleus (ortholog); mRNA metabolic process (ortholog); mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH genetic disease (ortholog); thrombocytopenia-absent radius syndrome (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955568 164050 166162 + 102030678 AGCD01074504;GBDF01051815;XM_005413424 XP_005413481 MODEL 8991305 protein-coding Sfr1 SWI5 dependent homologous recombination repair protein 1 ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN cellular response to estrogen stimulus (ortholog); double-strand break repair via homologous recombination (ortholog); positive regulation of DNA-templated transcription (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955485 6520747 6525359 - 102026429 AGCD01058621;GBDK01153601;XM_005403788;XM_005403789;XM_005403790;XM_005403791;XM_013504071;XM_013504072 XP_005403845;XP_005403846;XP_005403847;XP_005403848;XP_013359525;XP_013359526 MODEL 9011113 protein-coding LOC102012883 putative olfactory receptor 5AK3 NW_004955511 2055889 2056836 + 102012883 AGCD01066387;XM_005407982 XP_005408039 MODEL 10110096 ncrna LOC106148240 uncharacterized LOC106148240 NW_004955418 18580767 18609333 - 106148240 AGCD01019172;AGCD01019173;AGCD01019174;AGCD01019175;GBDF01169006;XR_001233509;XR_001233510;XR_001233511 MODEL 10308933 protein-coding LOC106147146 translation initiation factor IF-2-like NW_004955523 680842 682370 + 106147146 AGCD01068475;GBDF01246252;XM_013507117 XP_013362571 MODEL 8725502 protein-coding Slc22a2 solute carrier family 22 member 2 ENCODES a protein that exhibits acetylcholine transmembrane transporter activity (ortholog); amine transmembrane transporter activity (ortholog); choline transmembrane transporter activity (ortholog); INVOLVED IN acetylcholine transport (ortholog); amine transport (ortholog); amino acid import across plasma membrane (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH acute kidney failure (ortholog); end stage renal disease (ortholog); Endotoxemia (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955439 20567241 20608281 + 102012688 AGCD01036118;AGCD01036119;GBCQ01009150;XM_005390703;XM_005390704 XP_005390760;XP_005390761 MODEL 8887906 ncrna LOC102003861 uncharacterized LOC102003861 NW_004955472 10850722 10854380 + 102003861 AGCD01053727;GBDF01178480;XR_263568 MODEL 8986507 pseudo LOC102019339 60S acidic ribosomal protein P1 pseudogene NW_004955578 1064468 1064879 - 102019339 AGCD01075508;XM_005414072;XM_005414073 MODEL 9055653 pseudo LOC102011252 coiled-coil domain-containing protein 94 pseudogene NW_004955549 1407026 1453477 + 102011252 AGCD01072448;AGCD01072449 MODEL 10240238 ncrna LOC106149984 uncharacterized LOC106149984 NW_004955459 8412437 8438840 - 106149984 AGCD01048142;GBDF01207201;XR_001236489 MODEL 8852406 protein-coding Tpst1 tyrosylprotein sulfotransferase 1 ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein-tyrosine sulfotransferase activity (ortholog); INVOLVED IN peptidyl-tyrosine sulfation (ortholog); post-translational protein modification (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); colorectal adenocarcinoma (ortholog); COVID-19 (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi lumen (ortholog); Golgi membrane (ortholog) NW_004955456 8523362 8616891 + 102006316 AGCD01046488;AGCD01046489;AGCD01046490;AGCD01046491;AGCD01046492;AGCD01046493;AGCD01046494;AGCD01046495;AGCD01046496;GBBH01101451;GBDI01220614;XM_005396711;XM_005396714;XM_013520566 XP_005396768;XP_005396771;XP_013376020 MODEL 8772054 protein-coding Sod3 superoxide dismutase 3 ENCODES a protein that exhibits molecular adaptor activity (ortholog); superoxide dismutase activity (ortholog); INVOLVED IN blood vessel diameter maintenance (ortholog); nitric oxide metabolic process (ortholog); response to copper ion (ortholog); PARTICIPATES IN cardiovascular system disease pathway; diabetes mellitus pathway; ASSOCIATED WITH brain ischemia (ortholog); Chemical and Drug Induced Liver Injury (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN cytoplasm (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955480 257716 263149 - 102023262 AGCD01056580;AGCD01056581;GBBH01033040;GBCC01000175;XM_013503333 XP_013358787 MODEL 8814808 protein-coding Smim9 small integral membrane protein 9 NW_004955594 803406 816735 + 102029923 AGCD01076442;AGCD01076443;GBDK01096360;XM_005414667 XP_005414724 MODEL 9058353 protein-coding Pdzd8 PDZ domain containing 8 ENCODES a protein that exhibits endoplasmic reticulum-endosome tether activity (ortholog); endoplasmic reticulum-organelle membrane tether activity (ortholog); lipid transfer activity (ortholog); INVOLVED IN lysosome organization (ortholog); mitochondrial calcium ion homeostasis (ortholog); mitochondrion-endoplasmic reticulum membrane tethering (ortholog); ASSOCIATED WITH Intellectual Developmental Disorder with Autism and Dysmorphic Facies (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-endosome membrane contact site (ortholog); endoplasmic reticulum-lysosome membrane contact site (ortholog) NW_004955431 21980447 22060826 - 102029216 AGCD01030507;AGCD01030508;AGCD01030509;GBCQ01000406;XM_005387873;XM_005387874 XP_005387930;XP_005387931 MODEL 8975375 protein-coding S1pr1 sphingosine-1-phosphate receptor 1 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); G protein-coupled receptor binding (ortholog); sphingolipid binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); angiogenesis (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphai family; platelet-derived growth factor signaling pathway; sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Cardiomegaly (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog); presynapse (ortholog) NW_004955435 5880266 5882823 + 102008975 AGCD01032903;GBDI01225054;XM_013516565 XP_013372019 MODEL 9009520 pseudo LOC102008594 eukaryotic translation initiation factor 2A-like NW_004955406 5948906 5974852 + 102008594 AGCD01005744 MODEL 8771236 protein-coding Lkaaear1 LKAAEAR motif containing 1 NW_004955528 175380 179265 + 102022957 AGCD01069513;GBDF01051163;XM_005409905;XM_013507519;XM_013507520;XM_013507521;XM_013507522 XP_005409962;XP_013362973;XP_013362974;XP_013362975;XP_013362976 MODEL 8835887 pseudo LOC102027375 nucleolin-like NW_004955403 11283764 11318700 + 102027375 AGCD01001952 MODEL 8923204 pseudo LOC102030512 high mobility group protein B1-like NW_004955467 2470653 2572286 - 102030512 AGCD01051311;AGCD01051312;AGCD01051313;AGCD01051314;AGCD01051315;AGCD01051316 MODEL 9023955 protein-coding Rnase7 ribonuclease A family member 7 ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); peptidoglycan binding (ortholog); RNA nuclease activity (ortholog); INVOLVED IN antibacterial humoral response (ortholog); antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); defense response to Gram-negative bacterium (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog) NW_004955550 1796301 1797801 + 102005420 AGCD01072588;XM_005412090;XM_013508574 XP_005412147;XP_013364028 MODEL 8774859 protein-coding Rab11fip3 RAB11 family interacting protein 3 ENCODES a protein that exhibits dynein light intermediate chain binding (ortholog); identical protein binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN endocytic recycling (ortholog); Golgi to plasma membrane protein transport (ortholog); negative regulation of adiponectin secretion (ortholog); ASSOCIATED WITH epilepsy (ortholog); FOUND IN centrosome (ortholog); cleavage furrow (ortholog); endocytic vesicle membrane (ortholog) NW_004955442 16678136 16760663 - 102027239 AGCD01037905;AGCD01037906;AGCD01037907;AGCD01037908;AGCD01037909;GBBH01228926;GBDJ01230394;XM_013517818;XM_013517819 XP_013373272;XP_013373273 MODEL 8963976 protein-coding Rgs12 regulator of G protein signaling 12 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GTPase activator activity (ortholog); GTPase regulator activity (ortholog); INVOLVED IN negative regulation of G protein-coupled receptor signaling pathway (ortholog); termination of G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN calcium signaling pathway via the calcium-sensing receptor; G protein mediated signaling pathway via Galpha12/Galpha13 family; ASSOCIATED WITH schizophrenia (ortholog); FOUND IN apical dendrite (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955514 2081575 2154414 + 102006701 AGCD01067072;AGCD01067073;AGCD01067074;GBBH01064970;GBDF01306453;XM_013506795 XP_013362249 MODEL 8958879 protein-coding Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha ENCODES a protein that exhibits cAMP binding (ortholog); cAMP-dependent protein kinase inhibitor activity (ortholog); cAMP-dependent protein kinase regulator activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cardiac muscle cell proliferation (ortholog); cellular response to glucagon stimulus (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH acrodysostosis (ortholog); Acrodysostosis 1, with or without Hormone Resistance (ortholog); acute promyelocytic leukemia (ortholog); FOUND IN axoneme (ortholog); cAMP-dependent protein kinase complex (ortholog); centrosome (ortholog) NW_004955478 4241283 4262119 - 102026746 AGCD01055845;GBDI01009060;GBDJ01090068;XM_005402117 XP_005402174 MODEL 8846032 protein-coding Timm8a translocase of inner mitochondrial membrane 8A ENCODES a protein that exhibits identical protein binding (ortholog); zinc ion binding (ortholog); INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); protein localization to mitochondrion (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; ASSOCIATED WITH Animal Disease Models (ortholog); Auditory Neuropathy (ortholog); deafness-dystonia-optic neuronopathy syndrome (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrial intermembrane space chaperone complex (ortholog); mitochondrion (ortholog) NW_004955503 7480075 7483218 - 102025707 AGCD01064794;GBCE01065783;XM_005406950 XP_005407007 MODEL 8845698 protein-coding Plekhn1 pleckstrin homology domain containing N1 ENCODES a protein that exhibits cardiolipin binding (ortholog); phosphatidic acid binding (ortholog); phosphatidylinositol phosphate binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); positive regulation of apoptotic process (ortholog); response to hypoxia (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoskeleton (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955486 9736801 9744659 - 102011126 AGCD01059198;GBDJ01386505;XM_005404287;XM_005404288 XP_005404344;XP_005404345 MODEL 9005109 ncrna LOC102024567 uncharacterized LOC102024567 NW_004955418 19565708 19587079 + 102024567 AGCD01019196;GBCQ01122903;XR_260573 MODEL 8900018 protein-coding Selenos selenoprotein S ENCODES a protein that exhibits antioxidant activity (ortholog); ATPase binding (ortholog); enzyme binding (ortholog); INVOLVED IN cell redox homeostasis (ortholog); cellular response to lipopolysaccharide (ortholog); cellular response to oxidative stress (ortholog); ASSOCIATED WITH colorectal adenoma (ortholog); colorectal carcinoma (ortholog); Inflammation (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic microtubule (ortholog); Derlin-1 retrotranslocation complex (ortholog) NW_004955416 28152984 28162173 - 102010481 AGCD01017626;GBBH01033790;XM_013512671;XM_013512672 XP_013368125;XP_013368126 MODEL 8773462 pseudo LOC102010871 60S ribosomal protein L39 pseudogene NW_004955455 11174068 11175753 - 102010871 AGCD01045985;XM_005396506;XM_005396507 MODEL 8983501 pseudo LOC102027379 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955406 28315495 28316581 - 102027379 AGCD01006296 MODEL 8866682 protein-coding LOC102021856 small integral membrane protein 10-like protein 2A NW_004955460 13310462 13331180 + 102021856 AGCD01048680;XM_005397892 XP_005397949 MODEL 8760196 protein-coding Rbms1 RNA binding motif single stranded interacting protein 1 FOUND IN cytosol (ortholog) NW_004955449 13164306 13368011 + 102025194 AGCD01042131;AGCD01042132;AGCD01042133;AGCD01042134;GBDJ01136799;XM_005393344;XM_005393345;XM_005393346;XM_005393347;XM_005393348 XP_005393401;XP_005393402;XP_005393403;XP_005393404;XP_005393405 MODEL 8852360 protein-coding LOC102005641 sialic acid-binding Ig-like lectin 13 NW_004955558 974508 988735 + 102005641 AGCD01073408;AGCD01073409;GBBH01177448;XM_013508883 XP_013364337 MODEL 8736565 pseudo LOC102017795 5-azacytidine-induced protein 2 pseudogene NW_004955503 1186824 1187899 + 102017795 AGCD01064558 MODEL 8823516 pseudo LOC102018924 40S ribosomal protein S24 pseudogene NW_004955475 10115494 10123426 - 102018924 AGCD01055082 MODEL 8735339 protein-coding LOC102026380 prolactin-like NW_004955629 93755 100160 - 102026380 AGCD01077507;AGCD01077508;GBDF01185026;XM_005415032 XP_005415089 MODEL 8712997 protein-coding Ramp2 receptor activity modifying protein 2 ENCODES a protein that exhibits adrenomedullin binding (ortholog); adrenomedullin receptor activity (ortholog); coreceptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adherens junction assembly (ortholog); adrenomedullin receptor signaling pathway (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); adult respiratory distress syndrome (ortholog); Cardiomegaly (ortholog); FOUND IN adrenomedullin receptor complex (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955451 16584742 16586093 + 102022993 AGCD01043695;GBCB01022684;GBDJ01020216;XM_005394475 XP_005394532 MODEL 8815151 protein-coding Trmt6 tRNA methyltransferase 6 non-catalytic subunit INVOLVED IN mRNA processing (ortholog); FOUND IN nucleoplasm (ortholog); tRNA (m1A) methyltransferase complex (ortholog) NW_004955415 16333766 16390112 - 102016916 AGCD01016376;AGCD01016377;AGCD01016378;AGCD01016379;GBCQ01122321;XM_005380851;XM_005380852;XM_013512262 XP_005380908;XP_005380909;XP_013367716 MODEL 8752660 protein-coding Bud23 BUD23 rRNA methyltransferase and ribosome maturation factor ENCODES a protein that exhibits protein heterodimerization activity (ortholog); rRNA (guanine) methyltransferase activity (ortholog); INVOLVED IN positive regulation of rRNA processing (ortholog); rRNA (guanine-N7)-methylation (ortholog); ASSOCIATED WITH Williams-Beuren syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955456 14047409 14057483 - 102024647 AGCD01046632;GBBH01060290;XM_005396771 XP_005396828 MODEL 8914388 ncrna LOC102023580 uncharacterized LOC102023580 NW_004955471 5893827 5894991 + 102023580 AGCD01053115;GBDF01006377;XR_263525 MODEL 8972628 protein-coding Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 ENCODES a protein that exhibits CDP phosphatase activity (ortholog); CTPase activity (ortholog); GDP phosphatase activity (ortholog); INVOLVED IN CTP metabolic process (ortholog); GDP catabolic process (ortholog); nucleobase-containing small molecule catabolic process (ortholog); FOUND IN autophagosome membrane (ortholog); Golgi membrane (ortholog); lysosomal membrane (ortholog) NW_004955403 46609211 46637622 - 102018456 AGCD01002864;AGCD01002865;AGCD01002866;GBBH01116869;XM_005373700;XM_005373701 XP_005373757;XP_005373758 MODEL 9053548 protein-coding LOC102015886 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase-like NW_004955435 22449820 22464762 + 102015886 AGCD01033503;GBCQ01004122;XM_005389080 XP_005389137 MODEL 8808010 protein-coding Prss50 serine protease 50 ENCODES a protein that exhibits threonine-type endopeptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955420 25424082 25427705 + 102006920 AGCD01021358;GBDF01050276;GBDF01050277;XM_013513353 XP_013368807 MODEL 8942774 protein-coding Pcf11 PCF11 cleavage and polyadenylation factor subunit ENCODES a protein that exhibits RNA polymerase II complex binding (ortholog); INVOLVED IN regulation of mRNA 3'-end processing (ortholog); termination of RNA polymerase II transcription (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; ASSOCIATED WITH acute megakaryocytic leukemia (ortholog); FOUND IN mRNA cleavage factor complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955414 9401919 9428501 - 102027288 AGCD01015021;AGCD01015022;GBCE01076145;XM_005379801;XM_005379802 XP_005379858;XP_005379859 MODEL 9008764 protein-coding Rab11fip4 RAB11 family interacting protein 4 ENCODES a protein that exhibits protein homodimerization activity (ortholog); small GTPase binding (ortholog); INVOLVED IN neural retina development (ortholog); positive regulation of G1 to G0 transition (ortholog); regulation of cytokinesis (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cleavage furrow (ortholog); cytoplasmic vesicle (ortholog); endocytic vesicle (ortholog) NW_004955481 6501704 6554448 + 102010695 AGCD01057029;AGCD01057030;GBBH01052215;XM_013503485;XM_013503486 XP_013358939;XP_013358940 MODEL 9015681 pseudo LOC102009740 aldose reductase-related protein 2 pseudogene NW_004955428 145019 146060 + 102009740 AGCD01027566 MODEL 9020507 protein-coding S1pr2 sphingosine-1-phosphate receptor 2 ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); G protein-coupled receptor activity (ortholog); G protein-coupled receptor binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); filopodium assembly (ortholog); G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness 68 (ortholog); Experimental Diabetes Mellitus (ortholog); Fibrosis (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog); presynapse (ortholog) NW_004955495 1528963 1530527 - 102029193 AGCD01061698;GBBH01149946;GBDK01431367;XM_005405584 XP_005405641 MODEL 8764777 pseudo LOC102028710 nuclease-sensitive element-binding protein 1 pseudogene NW_004955451 1615225 1621531 + 102028710 AGCD01042974 MODEL 10158200 protein-coding LOC106147147 vegetative cell wall protein gp1-like NW_004955523 686979 695179 + 106147147 AGCD01068475;AGCD01068476;GBDI01034822;XM_013507118 XP_013362572 MODEL 8885594 ncrna LOC102010513 uncharacterized LOC102010513 NW_004955518 2093768 2169658 - 102010513 AGCD01067771;GBDI01245852;XR_001231842;XR_001231843;XR_001231844;XR_001231845;XR_001231846;XR_001231847;XR_001231848;XR_264567 MODEL 39132550 snorna SNORA70 Small nucleolar RNA SNORA70 8759565 ncrna LOC102003862 uncharacterized LOC102003862 NW_004955474 6739005 6740107 + 102003862 AGCD01054490;GBDF01162687;XR_263599 MODEL 8951159 protein-coding Slc7a13 solute carrier family 7 member 13 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); L-cystine transport (ortholog); L-glutamate transmembrane transport (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955417 3882910 3897753 - 102005591 AGCD01017931;GBCB01068798;XM_005381746;XM_005381747 XP_005381803;XP_005381804 MODEL 8780380 protein-coding Ppp1r12b protein phosphatase 1 regulatory subunit 12B ASSOCIATED WITH breast lobular carcinoma (ortholog); Breast Neoplasms (ortholog); Congenital Infantile Lactic Acidosis (ortholog); FOUND IN A band (ortholog); Z disc (ortholog) NW_004955406 38405297 38636503 + 102024760 AGCD01006601;AGCD01006602;AGCD01006603;AGCD01006604;AGCD01006605;AGCD01006606;AGCD01006607;AGCD01006608;AGCD01006609;GBCB01001973;XM_005375213;XM_005375215;XM_005375216;XM_005375218;XM_005375220;XM_005375223;XM_013522381;XM_013522389;XM_013522394;XM_013522404;XR_001236900;XR_001236901;XR_259519;XR_259520 XP_005375270;XP_005375272;XP_005375273;XP_005375275;XP_005375277;XP_005375280;XP_013377835;XP_013377843;XP_013377848;XP_013377858 MODEL 8927295 protein-coding LOC102006734 cathelin-like NW_004956037 8257 8882 - 102006734 AGCD01078923;GBCE01101299;XM_013510217 XP_013365671 MODEL 8813619 protein-coding Wdr81 WD repeat domain 81 ENCODES a protein that exhibits K63-linked polyubiquitin modification-dependent protein binding (ortholog); phosphatidylinositol 3-kinase inhibitor activity (ortholog); INVOLVED IN aggrephagy (ortholog); early endosome to late endosome transport (ortholog); mitochondrion organization (ortholog); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); cerebellar ataxia (ortholog); cerebellar ataxia, impaired intellectual development, and dysequilibrium syndrome 2 (ortholog); FOUND IN autophagosome membrane (ortholog); cytosol (ortholog); early endosome membrane (ortholog) NW_004955481 1450127 1462564 - 102016808 AGCD01056832;AGCD01056833;GBCE01008518;XM_005402608;XM_013503510;XM_013503511 XP_005402665;XP_013358964;XP_013358965 MODEL 8811387 protein-coding LOC102017797 uncharacterized LOC102017797 NW_004955427 10150908 10170576 - 102017797 AGCD01027128;AGCD01027129;AGCD01027130;AGCD01027131;AGCD01027132;AGCD01027133;GBDF01207976;XM_013515052 XP_013370506 MODEL 8736772 protein-coding Rbms2 RNA binding motif single stranded interacting protein 2 NW_004955458 4104124 4149120 + 102010873 AGCD01047371;AGCD01047372;AGCD01047373;AGCD01047374;AGCD01047375;AGCD01047376;AGCD01047377;AGCD01047378;AGCD01047379;GBCB01019880;XM_005397318;XM_005397319;XM_013520869;XM_013520870;XM_013520871;XM_013520872 XP_005397375;XP_005397376;XP_013376323;XP_013376324;XP_013376325;XP_013376326 MODEL 8833346 protein-coding Pcgf1 polycomb group ring finger 1 INVOLVED IN chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN nucleoplasm (ortholog); nucleus (ortholog); PcG protein complex (ortholog) NW_004955424 11282562 11284970 + 102024588 AGCD01024561;GBDF01187198;XM_005385494 XP_005385551 MODEL 8728967 ncrna LOC102011728 uncharacterized LOC102011728 NW_004955405 4802647 4833270 - 102011728 AGCD01004653;AGCD01004654;AGCD01004655;GBDF01208522;XR_001235207;XR_259362 MODEL 8851185 protein-coding LOC102029090 ferritin heavy chain-like NW_004955423 15836750 15837433 + 102029090 AGCD01023817;XM_005385362 XP_005385419 MODEL 8743504 protein-coding LOC102007103 cytochrome P450 2D17-like NW_004955413 27588186 27597795 - 102007103 AGCD01014517;GBCB01038107;XM_005379404;XM_013511460;XM_013511461 XP_005379461;XP_013366914;XP_013366915 MODEL 8895075 protein-coding Rnase9 ribonuclease A family member 9 (inactive) INVOLVED IN positive regulation of flagellated sperm motility involved in capacitation (ortholog) NW_004955550 1371792 1372355 - 102025947 AGCD01072564;XM_005412141 XP_005412198 MODEL 9031253 protein-coding Sfrp1 secreted frizzled related protein 1 ENCODES a protein that exhibits cysteine-type endopeptidase activity (ortholog); frizzled binding (ortholog); heparin binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); bone trabecula formation (ortholog); canonical Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); diastolic heart failure (ortholog); FOUND IN cell surface (ortholog); cytosol (ortholog); extracellular matrix (ortholog) NW_004955536 1663721 1702678 + 102015981 AGCD01070766;GBCE01029787;XM_005410533 XP_005410590 MODEL 9055917 protein-coding LOC102024572 60S ribosomal protein L39-like NW_004955485 6403559 6408184 + 102024572 AGCD01058619;GBCE01062521;GBDK01223219;XM_013504070 XP_013359524 MODEL 8979212 protein-coding LOC102010872 zinc finger protein 14-like NW_004955457 13021955 13040077 - 102010872 AGCD01047034;AGCD01047035;GBDF01018457;XM_005397067 XP_005397124 MODEL 8782846 protein-coding Plekho1 pleckstrin homology domain containing O1 INVOLVED IN lamellipodium morphogenesis (ortholog); myoblast fusion (ortholog); myoblast migration (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); muscle cell projection membrane (ortholog) NW_004955413 603011 606487 - 102012525 AGCD01013481;GBDF01000598;GBDK01001593;XM_013511531 XP_013366985 MODEL 10155468 protein-coding LOC106148241 uncharacterized LOC106148241 NW_004955418 20565803 20568059 + 106148241 AGCD01019237;GBCB01024863;XM_013512953;XM_013512954;XM_013512955;XM_013512956;XR_001233512;XR_001233513 XP_013368407;XP_013368408;XP_013368409;XP_013368410 MODEL 8924753 pseudo LOC102026012 dnaJ homolog subfamily B member 6-like NW_004955490 4325803 4326491 - 102026012 AGCD01060187 MODEL 8747976 protein-coding Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) ENCODES a protein that exhibits ADP phosphatase activity (ortholog); CDP phosphatase activity (ortholog); GDP phosphatase activity (ortholog); INVOLVED IN 'de novo' post-translational protein folding (ortholog); protein N-linked glycosylation (ortholog); UDP catabolic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog); extracellular region (ortholog) NW_004955523 1407812 1441829 + 102022732 AGCD01068517;AGCD01068518;AGCD01068519;GBDF01052180;XM_013507129;XM_013507130;XM_013507131;XM_013507132;XM_013507133;XM_013507134;XM_013507135;XM_013507136;XM_013507137 XP_013362583;XP_013362584;XP_013362585;XP_013362586;XP_013362587;XP_013362588;XP_013362589;XP_013362590;XP_013362591 MODEL 8984666 protein-coding Slc22a20 solute carrier family 22 member 20 NW_004955422 19979250 20005115 - 102013181 AGCD01023052;AGCD01023053;AGCD01023054;AGCD01023055;AGCD01023056;AGCD01023057;GBDF01294741;XM_005384507 XP_005384564 MODEL 9063749 protein-coding Prkar1b protein kinase cAMP-dependent type I regulatory subunit beta ENCODES a protein that exhibits cAMP binding (ortholog); cAMP-dependent protein kinase inhibitor activity (ortholog); cAMP-dependent protein kinase regulator activity (ortholog); INVOLVED IN learning or memory (ortholog); modulation of chemical synaptic transmission (ortholog); negative regulation of cAMP/PKA signal transduction (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH hypertension (ortholog); MARBACH-SCHAAF NEURODEVELOPMENTAL SYNDROME (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cAMP-dependent protein kinase complex (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955460 8357890 8479875 - 102010036 AGCD01048515;AGCD01048516;AGCD01048517;GBDJ01276904;XM_005397778;XM_005397779 XP_005397835;XP_005397836 MODEL 8899113 protein-coding LOC102011255 leukocyte immunoglobulin-like receptor subfamily A member 5 NW_004955567 1233166 1237734 - 102011255 AGCD01074465;GBDF01000430;XM_005413374 XP_005413431 MODEL 10341818 protein-coding Smkr1 small lysine rich protein 1 NW_004955479 10288231 10288701 + 106146451 AGCD01056534;GBDF01008125;GBDI01069663;XM_013503303 XP_013358757 MODEL 8814051 ncrna LOC102028711 uncharacterized LOC102028711 NW_004955404 36058754 36092402 + 102028711 AGCD01004148;AGCD01004149;GBDF01039706;XR_259332 MODEL 9061651 protein-coding Tpst2 tyrosylprotein sulfotransferase 2 ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein-tyrosine sulfotransferase activity (ortholog); INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); peptidyl-tyrosine sulfation (ortholog); prevention of polyspermy (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi lumen (ortholog); Golgi membrane (ortholog) NW_004955455 1106403 1128455 - 102016778 AGCD01045568;GBBH01026338;XM_013520467;XM_013520468 XP_013375921;XP_013375922 MODEL 8798004 protein-coding Pth2r parathyroid hormone 2 receptor ENCODES a protein that exhibits parathyroid hormone receptor activity (ortholog); INVOLVED IN positive regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH syndromic intellectual disability (ortholog) NW_004955457 6584627 6674990 - 102025875 AGCD01046846;AGCD01046847;AGCD01046848;AGCD01046849;AGCD01046850;XM_005397112 XP_005397169 MODEL 8881163 ncrna LOC102008595 uncharacterized LOC102008595 NW_004955455 5552047 5558107 + 102008595 AGCD01045738;GBDF01182597;XR_001236290;XR_001236291 MODEL 8836799 protein-coding Pdzd9 PDZ domain containing 9 NW_004955493 690694 705953 - 102008545 AGCD01060859;GBDF01005698;XM_005405055;XM_005405056 XP_005405112;XP_005405113 MODEL 8897463 protein-coding Llgl1 LLGL scribble cell polarity complex component 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); protein kinase binding (ortholog); small GTPase binding (ortholog); INVOLVED IN axonogenesis (ortholog); cortical actin cytoskeleton organization (ortholog); Golgi to plasma membrane transport (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); hydrocephalus (ortholog); FOUND IN axon (ortholog); basolateral plasma membrane (ortholog); cortical actin cytoskeleton (ortholog) NW_004955478 11075399 11089818 - 102021006 AGCD01056158;AGCD01056159;GBBH01126920;GBDJ01224920;XM_005402281 XP_005402338 MODEL 8799538 protein-coding Timm8b translocase of inner mitochondrial membrane 8 homolog B PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955412 13766532 13768453 - 102026956 AGCD01012845;GBDF01002080;XM_005378108 XP_005378165 MODEL 8812610 pseudo LOC102006737 acyl carrier protein, mitochondrial pseudogene NW_004955452 9572395 9574890 - 102006737 AGCD01044240 MODEL 8763580 protein-coding Bud31 BUD31 spliceosome associated protein ENCODES a protein that exhibits nuclear receptor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH schistosomiasis (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955460 15083472 15092217 + 102009584 AGCD01048768;GBDF01047466;XM_005397944;XM_005397945 XP_005398001;XP_005398002 MODEL 39133462 snrna U4 U4 spliceosomal RNA 8724348 protein-coding Selenot selenoprotein T ENCODES a protein that exhibits thioredoxin-disulfide reductase (NADPH) activity (ortholog); INVOLVED IN cell redox homeostasis (ortholog); cellular oxidant detoxification (ortholog); glucose homeostasis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955448 1794959 1814282 + 102025635 AGCD01041268;AGCD01041269;AGCD01041270;GBDF01082136;XM_013518685 XP_013374139 MODEL 9025380 ncrna LOC102019342 uncharacterized LOC102019342 NW_004955402 25014435 25015928 + 102019342 AGCD01000650;GBDF01055968;XR_259067 MODEL 8764522 protein-coding Prss53 serine protease 53 NW_004955493 7921335 7927233 - 102020456 AGCD01061240;GBDJ01350491;XM_013504760 XP_013360214 MODEL 10252589 protein-coding LOC106147148 uncharacterized LOC106147148 NW_004955523 2420415 2423013 + 106147148 AGCD01068579;AGCD01068580;GBDF01279201;XM_013507121 XP_013362575 MODEL 9008330 pseudo LOC102026383 prostaglandin E synthase 3-like NW_004955403 48980768 48981249 + 102026383 AGCD01002932 MODEL 9057926 ncrna LOC102010517 uncharacterized LOC102010517 NW_004955530 2532397 2639683 + 102010517 AGCD01069921;AGCD01069922;AGCD01069923;AGCD01069924;AGCD01069925;AGCD01069926;AGCD01069927;GBDF01160127;XR_001231996;XR_001231997;XR_001231998;XR_264710 MODEL 8954227 protein-coding LOC102003863 protocadherin beta-7 NW_004955415 12610873 12620570 - 102003863 AGCD01016207;AGCD01016208;XM_013512126 XP_013367580 MODEL 8941615 protein-coding LOC102012885 olfactory receptor 1052-like NW_004955511 1009362 1010300 + 102012885 AGCD01066353;XM_005408220 XP_005408277 MODEL 8973023 protein-coding Trmt61a tRNA methyltransferase 61A ENCODES a protein that exhibits mRNA (adenine-N1-)-methyltransferase activity (ortholog); tRNA (adenine(58)-N1)-methyltransferase activity (ortholog); INVOLVED IN mRNA processing (ortholog); ASSOCIATED WITH Cornelia de Lange syndrome (ortholog); FOUND IN tRNA (m1A) methyltransferase complex (ortholog) NW_004955538 2383666 2393667 + 102010944 AGCD01071124;GBDI01164437;XM_005410781 XP_005410838 MODEL 9044015 protein-coding Rgs13 regulator of G protein signaling 13 INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); negative regulation of G protein-coupled receptor signaling pathway (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955406 30111770 30134605 + 102017840 AGCD01006358;AGCD01006359;GBDI01160957;XM_005375099;XM_005375100;XM_013521830 XP_005375156;XP_005375157;XP_013377284 MODEL 8943864 protein-coding Wdr82 WD repeat domain 82 ENCODES a protein that exhibits chromatin binding (ortholog); lncRNA binding (ortholog); INVOLVED IN gene expression (ortholog); lncRNA catabolic process (ortholog); negative regulation of DNA-templated transcription, elongation (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); histone methyltransferase complex (ortholog) NW_004955532 3860785 3880714 - 102027900 AGCD01070302;GBDK01090445;XM_005410348 XP_005410405 MODEL 8702201 pseudo LOC102005642 T-complex protein 1 subunit theta pseudogene NW_004955443 13804351 13806658 - 102005642 AGCD01038484 MODEL 8810815 protein-coding Rbms3 RNA binding motif single stranded interacting protein 3 ENCODES a protein that exhibits mRNA 3'-UTR AU-rich region binding (ortholog); mRNA 3'-UTR binding (ortholog); poly(A) binding (ortholog); INVOLVED IN defense response to tumor cell (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH exfoliation syndrome (ortholog); FOUND IN cytoplasm (ortholog) NW_004955430 20714647 21394049 + 102020364 AGCD01029751;AGCD01029752;AGCD01029753;AGCD01029754;AGCD01029755;AGCD01029756;AGCD01029757;AGCD01029758;AGCD01029759;AGCD01029760;AGCD01029761;AGCD01029762;AGCD01029763;AGCD01029764;AGCD01029765;GBCB01027277;XM_005387516;XM_013515627;XM_013515628;XM_013515629;XM_013515630;XM_013515631 XP_005387573;XP_013371081;XP_013371082;XP_013371083;XP_013371084;XP_013371085 MODEL 8788001 protein-coding Pthlh parathyroid hormone like hormone ENCODES a protein that exhibits hormone activity (ortholog); peptide hormone receptor binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); endochondral ossification (ortholog); endoderm development (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH achondroplasia (ortholog); acute necrotizing pancreatitis (ortholog); alcoholic pancreatitis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955505 6834533 6846909 + 102018623 AGCD01065187;GBBH01206343;GBDK01026033;XM_005407152 XP_005407209 MODEL 8718794 ncrna LOC102021859 uncharacterized LOC102021859 NW_004955463 6152064 6152789 - 102021859 AGCD01049657;GBDF01145117;XR_001236626 MODEL 10118807 ncrna LOC106149985 uncharacterized LOC106149985 NW_004955406 17722370 17778855 - 106149985 AGCD01006015;GBDK01363875;XR_001236490 MODEL 9041298 protein-coding S1pr3 sphingosine-1-phosphate receptor 3 ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); inflammatory response (ortholog); negative regulation of establishment of endothelial barrier (ortholog); PARTICIPATES IN sphingosine 1-phosphate signaling pathway; FOUND IN plasma membrane (ortholog); presynapse (ortholog) NW_004955515 3024258 3035996 - 102018012 AGCD01067267;GBCE01095063;XM_005408882 XP_005408939 MODEL 9049960 pseudo LOC102018931 histone H2B 7-like NW_004955483 868739 870866 - 102018931 AGCD01057634 MODEL 8739202 ncrna LOC102024573 uncharacterized LOC102024573 NW_004955486 1484368 1502960 + 102024573 AGCD01058956;GBBH01036206;XR_263940 MODEL 9048651 protein-coding Plekho2 pleckstrin homology domain containing O2 INVOLVED IN macrophage apoptotic process (ortholog); ASSOCIATED WITH carotid stenosis (ortholog); colorectal cancer (ortholog) NW_004955450 10692305 10714031 - 102015262 AGCD01042632;GBCE01154962;XM_005393747 XP_005393804 MODEL 8837536 protein-coding Ramp3 receptor activity modifying protein 3 ENCODES a protein that exhibits adrenomedullin receptor activity (ortholog); amylin receptor activity (ortholog); coreceptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adrenomedullin receptor signaling pathway (ortholog); amylin receptor 3 signaling pathway (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); Lymphatic Metastasis (ortholog); FOUND IN adrenomedullin receptor complex (ortholog); amylin receptor complex 3 (ortholog); cell surface (ortholog) NW_004955456 7159845 7168718 - 102014115 AGCD01046391;GBBH01141274;XM_005396645 XP_005396702 MODEL 10235080 protein-coding LOC106148242 uncharacterized LOC106148242 NW_004955418 20630777 20631652 - 106148242 AGCD01019241;XM_013512958 XP_013368412 MODEL 8734061 protein-coding Ppp1r12c protein phosphatase 1 regulatory subunit 12C FOUND IN cytoplasm (ortholog) NW_004955567 1058676 1072555 + 102005426 AGCD01074457;AGCD01074458;GBCE01055419;GBDJ01084720;XM_013509250;XM_013509251;XM_013509252;XM_013509253;XM_013509254 XP_013364704;XP_013364705;XP_013364706;XP_013364707;XP_013364708 MODEL 8873449 protein-coding LOC102030515 olfactory receptor 10J3-like NW_004955468 11120414 11121340 - 102030515 AGCD01052115;XM_005400321 XP_005400378 MODEL 8732521 ncrna LOC102023581 uncharacterized LOC102023581 NW_004955414 33150630 33154924 + 102023581 AGCD01015799;GBDF01055488;XR_001233126;XR_001233127;XR_260226 MODEL 9030055 pseudo LOC102017800 heterogeneous nuclear ribonucleoproteins A2/B1 pseudogene NW_004955428 18182006 18184385 - 102017800 AGCD01028058 MODEL 8942515 ncrna LOC102027380 uncharacterized LOC102027380 NW_004955407 8162878 8187337 - 102027380 AGCD01006993;GBDF01278215;XR_259557 MODEL 9014292 protein-coding LOC102008596 keratin-associated protein 20-2-like NW_004955407 30188698 30188859 + 102008596 AGCD01007628;XM_005375645 XP_005375702 MODEL 8873428 ncrna LOC102029092 uncharacterized LOC102029092 NW_004955424 23554953 23560199 - 102029092 AGCD01025015;GBBH01198254;XR_261104 MODEL 39133829 ribozyme RNase_MRP RNase MRP 8912687 ncrna LOC102007107 uncharacterized LOC102007107 NW_004955414 22942884 22992663 + 102007107 AGCD01015486;GBDF01051420;XR_260189 MODEL 9032392 protein-coding LOC102011733 cytochrome b-c1 complex subunit 9 FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex III (ortholog) NW_004955455 4013197 4015448 + 102011733 AGCD01045662;GBDF01008630;XM_005396224 XP_005396281 MODEL 8763593 ncrna LOC102009741 uncharacterized LOC102009741 NW_004955509 2061123 2079468 + 102009741 AGCD01065988;XR_001231659;XR_264399 MODEL 8868523 protein-coding Sofu1 sperm-oocyte fusion factor 1 INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog) NW_004955494 688212 689634 - 102030644 AGCD01061383;GBCQ01060938;XM_005405379 XP_005405436 MODEL 8787777 gene LOC102010877 T-cell receptor alpha chain V region HPB-MLT-like NW_004955409 38439384 38453331 - 102010877 AGCD01010560;XR_259812 MODEL 8900974 protein-coding Rab11fip5 RAB11 family interacting protein 5 ENCODES a protein that exhibits gamma-tubulin binding (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); cellular response to type II interferon (ortholog); insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); COVID-19 (ortholog); FOUND IN early endosome (ortholog); Golgi apparatus (ortholog); mitochondrial outer membrane (ortholog) NW_004955424 12506738 12544284 + 102019291 AGCD01024613;AGCD01024614;GBBH01155266;GBDF01046089;XM_005385572;XM_005385573;XM_005385574 XP_005385629;XP_005385630;XP_005385631 MODEL 8700315 protein-coding Sfrp2 secreted frizzled related protein 2 ENCODES a protein that exhibits endopeptidase activator activity (ortholog); enzyme activator activity (ortholog); fibronectin binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); apoptotic process (ortholog); branching involved in blood vessel morphogenesis (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); inflammatory bowel disease (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog) NW_004955471 8103937 8112596 - 102006653 AGCD01053178;AGCD01053179;GBBH01060570;GBDJ01000856;XM_005400928 XP_005400985 MODEL 8804462 protein-coding Selenov selenoprotein V NW_004955468 60744 66688 - 102020320 AGCD01051679;AGCD01051680;GBDF01000131;XM_013522269;XM_013522270;XM_013522271;XM_013522272;XR_001236868 XP_013377723;XP_013377724;XP_013377725;XP_013377726 MODEL 8945699 protein-coding Entpd6 ectonucleoside triphosphate diphosphohydrolase 6 ENCODES a protein that exhibits CDP phosphatase activity (ortholog); GDP phosphatase activity (ortholog); guanosine-5'-triphosphate,3'-diphosphate diphosphatase activity (ortholog); INVOLVED IN response to calcium ion (ortholog); response to magnesium ion (ortholog); ASSOCIATED WITH obesity (ortholog); seminoma (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog); Golgi apparatus (ortholog) NW_004955415 31219909 31245107 + 102010479 AGCD01016671;AGCD01016672;GBDK01241622;XM_005380988 XP_005381045 MODEL 39132561 snorna SNORA70 Small nucleolar RNA SNORA70 9032128 protein-coding Smlr1 small leucine rich protein 1 NW_004955436 11639564 11647131 + 102029996 AGCD01033818;GBCQ01129815;XM_013516680 XP_013372134 MODEL 9064168 pseudo LOC102028717 poly(A) polymerase alpha-like NW_004955406 31808642 31981710 - 102028717 AGCD01006417;AGCD01006418;AGCD01006419;AGCD01006420;AGCD01006421;AGCD01006422;AGCD01006423;AGCD01006424;AGCD01006425;AGCD01006426 MODEL 8744818 protein-coding LOC102011261 vomeronasal type-1 receptor 4-like NW_004955584 575353 576579 - 102011261 AGCD01075948;XM_005414368 XP_005414425 MODEL 8948583 protein-coding Prkar2a protein kinase cAMP-dependent type II regulatory subunit alpha ENCODES a protein that exhibits beta-2 adrenergic receptor binding (ortholog); cAMP binding (ortholog); cAMP-dependent protein kinase inhibitor activity (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); negative regulation of cAMP-dependent protein kinase activity (ortholog); negative regulation of cAMP/PKA signal transduction (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH congestive heart failure (ortholog); FOUND IN axoneme (ortholog); cAMP-dependent protein kinase complex (ortholog); centrosome (ortholog) NW_004955532 827112 896487 - 102006281 AGCD01070155;AGCD01070156;AGCD01070157;GBDF01007082;XM_005410362 XP_005410419 MODEL 8808655 pseudo LOC102026387 ferritin heavy chain pseudogene NW_004955452 17171308 17172070 - 102026387 AGCD01044545;XM_005395254 MODEL 8734614 protein-coding Ptk2 protein tyrosine kinase 2 ENCODES a protein that exhibits actin binding (ortholog); identical protein binding (ortholog); integrin binding (ortholog); INVOLVED IN angiogenesis (ortholog); blood vessel development (ortholog); cell migration (ortholog); PARTICIPATES IN integrin mediated signaling pathway; long term potentiation; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); Breast Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); ciliary basal body (ortholog) NW_004955461 14337914 14622779 - 102025551 AGCD01049055;AGCD01049056;GBBH01185452;GBCB01040518;XM_005398062;XM_005398063;XM_013521315;XM_013521316;XM_013521317;XM_013521318;XM_013521319;XM_013521320;XM_013521321;XM_013521322;XM_013521323 XP_005398119;XP_005398120;XP_013376769;XP_013376770;XP_013376771;XP_013376772;XP_013376773;XP_013376774;XP_013376775;XP_013376776;XP_013376777 MODEL 10322074 ncrna LOC106148243 uncharacterized LOC106148243 NW_004955418 20628145 20630549 + 106148243 AGCD01019241;XR_001233514 MODEL 8934727 protein-coding Tpx2 TPX2 microtubule nucleation factor ENCODES a protein that exhibits importin-alpha family protein binding (ortholog); molecular adaptor activity (ortholog); protein kinase binding (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); microtubule nucleation (ortholog); mitotic spindle assembly (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN axon hillock (ortholog); intercellular bridge (ortholog); microtubule cytoskeleton (ortholog) NW_004955422 29170695 29233924 - 102014064 AGCD01023379;AGCD01023380;AGCD01023381;AGCD01023382;AGCD01023383;GBBH01149736;XM_005384887;XM_005384888;XM_005384889;XM_005384890;XM_005384891;XM_005384892;XM_013514186;XM_013514187;XM_013514188;XM_013514190 XP_005384944;XP_005384945;XP_005384946;XP_005384947;XP_005384948;XP_005384949;XP_013369640;XP_013369641;XP_013369642;XP_013369644 MODEL 9014617 protein-coding Pdzk1 PDZ domain containing 1 ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN carnitine transmembrane transport (ortholog); in utero embryonic development (ortholog); positive regulation of protein localization to membrane (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Breast Neoplasms (ortholog); Prostatic Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog) NW_004955568 405697 436346 + 102008785 AGCD01074514;GBCQ01008166;XM_005413444;XM_005413447 XP_005413501;XP_005413504 MODEL 9022719 pseudo LOC102006739 40S ribosomal protein S4, X isoform-like NW_004955453 3829718 3830520 + 102006739 AGCD01044669 MODEL 8816288 protein-coding Llgl2 LLGL scribble cell polarity complex component 2 ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN branching involved in labyrinthine layer morphogenesis (ortholog); establishment or maintenance of polarity of embryonic epithelium (ortholog); L-leucine transport (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); COVID-19 (ortholog); Neoplasm Metastasis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955553 2377640 2415152 + 102030244 AGCD01072935;GBDJ01082430;XM_005412308;XM_013508660;XM_013508661;XM_013508662 XP_005412365;XP_013364114;XP_013364115;XP_013364116 MODEL 8968359 ncrna LOC102019343 uncharacterized LOC102019343 NW_004955450 1860097 1867224 + 102019343 AGCD01042371;GBDF01194629;XR_262521 MODEL 8862512 protein-coding Wdr83 WD repeat domain 83 INVOLVED IN inflammatory response to wounding (ortholog); mRNA splicing, via spliceosome (ortholog); neural tube closure (ortholog); ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); lysosome (ortholog) NW_004955415 31774017 31778737 + 102018387 AGCD01016697;GBDF01114913;XM_005381017 XP_005381074 MODEL 8714527 ncrna LOC102007111 uncharacterized LOC102007111 NW_004955415 1538810 1543595 + 102007111 AGCD01015868;GBDF01258856;XR_260258 MODEL 8952464 protein-coding LOC102021862 N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase-like NW_004955465 3746876 3764999 - 102021862 AGCD01050389;AGCD01050390;AGCD01050391;GBBH01167444;XM_005398838 XP_005398895 MODEL 8877461 protein-coding Slc7a14 solute carrier family 7 member 14 ENCODES a protein that exhibits gamma-aminobutyric acid transmembrane transporter activity (ortholog); INVOLVED IN gamma-aminobutyric acid import (ortholog); ASSOCIATED WITH blindness (ortholog); fundus dystrophy (ortholog); retinitis pigmentosa 68 (ortholog); FOUND IN lysosomal membrane (ortholog) NW_004955420 624929 732108 - 102021769 AGCD01020550;AGCD01020551;GBCE01181118;XM_005382983 XP_005383040 MODEL 8938535 protein-coding LOC102026013 GTPase IMAP family member 5 NW_004955491 5158948 5166924 + 102026013 AGCD01060472;GBDI01128266;XM_013504613;XM_013504614;XM_013504615;XM_013504616;XM_013504617 XP_013360067;XP_013360068;XP_013360069;XP_013360070;XP_013360071 MODEL 8706051 ncrna LOC102015894 uncharacterized LOC102015894 NW_004955440 9879399 9883532 - 102015894 AGCD01036385;XR_001235270 MODEL 8730296 ncrna LOC102018932 uncharacterized LOC102018932 NW_004955419 13903856 13908224 - 102018932 AGCD01020009;GBDF01187427;XR_260628 MODEL 8904583 protein-coding Prss54 serine protease 54 NW_004955433 15775492 15788128 - 102011233 AGCD01031765;GBDF01046812;XM_013516274 XP_013371728 MODEL 8883390 pseudo LOC102028051 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 pseudogene NW_004955451 1414536 1415337 + 102028051 AGCD01042969 MODEL 10236556 ncrna LOC106147149 uncharacterized LOC106147149 NW_004955408 24614177 24622117 - 106147149 AGCD01008621;GBDF01211538;XR_001231920 MODEL 8872289 protein-coding Pcgf2 polycomb group ring finger 2 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); cellular response to hydrogen peroxide (ortholog); chromatin organization (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN chromatin (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955451 13817559 13822342 - 102018552 AGCD01043506;GBCQ01179093;XM_013519275 XP_013374729 MODEL 9005137 protein-coding S1pr4 sphingosine-1-phosphate receptor 4 INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); sphingosine-1-phosphate receptor signaling pathway (ortholog); PARTICIPATES IN sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); FOUND IN mitochondrion (ortholog); presynapse (ortholog) NW_004955495 5243797 5247649 - 102026125 AGCD01061987;GBBH01024899;XM_005405851 XP_005405908 MODEL 9026903 protein-coding Selenow selenoprotein W INVOLVED IN erythrocyte differentiation (ortholog); response to lipopolysaccharide (ortholog); response to selenium ion (ortholog); ASSOCIATED WITH epilepsy (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955574 1522304 1526862 + 102015064 AGCD01075186;GBCB01004024;XM_005415250;XR_001232449 XP_005415307 MODEL 8821153 protein-coding LOC102010524 protein S100-A6-like NW_004955545 107981 108711 - 102010524 AGCD01071767;XM_005411404 XP_005411461 MODEL 8711849 protein-coding LOC102003870 eotaxin NW_004955481 9017930 9020436 + 102003870 AGCD01057092;GBDF01030595;XM_005402838 XP_005402895 MODEL 8764802 ncrna LOC102030517 uncharacterized LOC102030517 NW_004955470 4919591 4922049 + 102030517 AGCD01052740;GBDF01159571;XR_263471 MODEL 8943205 protein-coding Timm9 translocase of inner mitochondrial membrane 9 ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein-folding chaperone binding (ortholog); unfolded protein holdase activity (ortholog); INVOLVED IN protein insertion into mitochondrial inner membrane (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; carrier pathway of mitochondrial protein import; FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial intermembrane space chaperone complex (ortholog) NW_004955466 12115003 12125024 - 102005688 AGCD01051113;GBCE01045930;XM_005399218;XM_005399219;XM_013521977 XP_005399275;XP_005399276;XP_013377431 MODEL 9022207 protein-coding Bysl bystin like INVOLVED IN blastocyst formation (ortholog); cell population proliferation (ortholog); cellular response to forskolin (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH Brain Injuries (ortholog); FOUND IN apical part of cell (ortholog); cell projection (ortholog); chromosome (ortholog) NW_004955437 8257081 8266627 + 102019200 AGCD01034483;GBDF01090288;XM_005389708 XP_005389765 MODEL 8948764 protein-coding Trmt61b tRNA methyltransferase 61B ENCODES a protein that exhibits mRNA (adenine-N1-)-methyltransferase activity (ortholog); rRNA (adenine) methyltransferase activity (ortholog); tRNA (adenine(58)-N1)-methyltransferase activity (ortholog); INVOLVED IN mitochondrial tRNA processing (ortholog); mRNA processing (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955469 10744814 10771560 - 102014440 AGCD01052549;GBDI01162186;XM_013522617 XP_013378071 MODEL 8964625 protein-coding LOC102005646 zinc finger protein 136-like NW_004955569 1261038 1282057 - 102005646 AGCD01074645;GBDI01011361;XM_005413498;XM_013509376 XP_005413555;XP_013364830 MODEL 39133831 ribozyme RNase_MRP RNase MRP 8841742 protein-coding Rgs14 regulator of G protein signaling 14 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GDP-dissociation inhibitor activity (ortholog); GTPase activating protein binding (ortholog); INVOLVED IN cell division (ortholog); chromosome segregation (ortholog); learning (ortholog); ASSOCIATED WITH nephrolithiasis (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955408 29602654 29616793 + 102024093 AGCD01008765;GBDI01222250;XM_005376427 XP_005376484 MODEL 8703787 ncrna LOC102011736 uncharacterized LOC102011736 NW_004955456 6662166 6678865 - 102011736 AGCD01046375;GBDF01041115;XR_001236334 MODEL 9024076 protein-coding Rbmx RNA binding motif protein X-linked ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); mRNA binding (ortholog); INVOLVED IN cellular response to interleukin-1 (ortholog); membrane protein ectodomain proteolysis (ortholog); mRNA splice site recognition (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH genetic disease (ortholog); Spinal Cord Injuries (ortholog); syndromic X-linked intellectual disability Shashi type (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); euchromatin (ortholog); extracellular exosome (ortholog) NW_004955489 8280842 8286252 + 102010494 AGCD01060013;GBCE01001763;XM_013504493 XP_013359947 MODEL 39133833 ribozyme RNase_MRP RNase MRP 8831095 protein-coding Bzw1 basic leucine zipper and W2 domains 1 INVOLVED IN regulation of translational initiation (ortholog); ASSOCIATED WITH melanoma (ortholog); FOUND IN cytoplasm (ortholog) NW_004955403 676384 688353 - 102003303 AGCD01001704;AGCD01001705;GBDF01009056;XM_005373238;XM_013511843 XP_005373295;XP_013367297 MODEL 8989259 protein-coding LOC102012891 uncharacterized LOC102012891 NW_004955523 1028153 1037283 - 102012891 AGCD01068489;GBCE01116809;XM_013507151;XR_001231927;XR_001231928;XR_001231929;XR_001231930;XR_001231931;XR_001231932;XR_001231933;XR_001231934;XR_001231935;XR_001231936;XR_001231937 XP_013362605 MODEL 8728678 protein-coding Ran RAN, member RAS oncogene family ENCODES a protein that exhibits dynein intermediate chain binding (ortholog); G protein activity (ortholog); GDP binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cellular response to mineralocorticoid stimulus (ortholog); GTP metabolic process (ortholog); PARTICIPATES IN CRM1 export pathway; microRNA pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN centriole (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955482 1222944 1223891 - 102029862 AGCD01057206;GBCQ01009220;GBDF01002060;XM_005402988 XP_005403045 MODEL 8833944 protein-coding Smndc1 survival motor neuron domain containing 1 FOUND IN nuclear body (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955485 1070596 1081979 + 102016920 AGCD01058470;GBCQ01149251;XM_005403757;XM_005403758 XP_005403814;XP_005403815 MODEL 8859305 protein-coding LOC102011263 cornifin-B NW_004955592 410702 412632 - 102011263 AGCD01076312;GBCC01001188;XM_005414616 XP_005414673 MODEL 9054371 protein-coding Ppp1r13b protein phosphatase 1 regulatory subunit 13B INVOLVED IN intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); positive regulation of cellular process (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH Childhood Schizophrenia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955538 2519765 2594769 - 102017603 AGCD01071128;AGCD01071129;GBDI01140082;XM_005410809;XM_005410811;XM_013507841;XM_013507842 XP_005410866;XP_005410868;XP_013363295;XP_013363296 MODEL 8835659 pseudo LOC102017802 transcription factor SPT20 homolog pseudogene NW_004955509 4675525 4678213 - 102017802 AGCD01066084;XM_005407843 MODEL 8726475 protein-coding LOC102026391 testis-specific serine/threonine-protein kinase 2 NW_004955455 3456753 3458084 + 102026391 AGCD01045628;GBDF01006455;XM_005396176 XP_005396233 MODEL 9020712 protein-coding LOC102008598 keratin-associated protein 10-7-like NW_004955407 41534110 41537176 - 102008598 AGCD01007870;XM_013505446 XP_013360900 MODEL 8984426 protein-coding Pcgf3 polycomb group ring finger 3 ENCODES a protein that exhibits histone H2AK119 ubiquitin ligase activity (ortholog); INVOLVED IN random inactivation of X chromosome (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN nucleoplasm (ortholog); nucleus (ortholog); PcG protein complex (ortholog) NW_004955514 307331 350039 + 102007459 AGCD01067006;AGCD01067007;AGCD01067008;GBBH01213986;XM_005408674;XM_005408675;XM_005408676;XM_013506751;XM_013506752 XP_005408731;XP_005408732;XP_005408733;XP_013362205;XP_013362206 MODEL 8863519 protein-coding Slc22a23 solute carrier family 22 member 23 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955465 9840017 10006114 + 102024102 AGCD01050496;AGCD01050497;AGCD01050498;GBBH01214447;GBDF01050917;XM_005398990;XR_001236751;XR_001236752 XP_005399047 MODEL 10284683 protein-coding LOC106148244 serine/arginine repetitive matrix protein 1-like NW_004955418 966241 967567 + 106148244 AGCD01018696;GBDJ01300448;XM_013512967;XR_001233515 XP_013368421 MODEL 8893105 protein-coding Tra2a transformer 2 alpha homolog ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); positive regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); skin disease (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955410 25759649 25784128 - 102015297 AGCD01011173;AGCD01011174;GBDJ01001545;XM_005377400 XP_005377457 MODEL 10381707 ncrna LOC106149986 uncharacterized LOC106149986 NW_004955459 15441364 15449019 - 106149986 AGCD01048322;GBDF01248965;XR_001236491;XR_001236492 MODEL 8981518 protein-coding Ptk2b protein tyrosine kinase 2 beta ENCODES a protein that exhibits 3-phosphoinositide-dependent protein kinase binding (ortholog); calcium/calmodulin-dependent protein kinase activity (ortholog); enzyme binding (ortholog); INVOLVED IN actin filament organization (ortholog); activation of GTPase activity (ortholog); activation of Janus kinase activity (ortholog); PARTICIPATES IN endothelin signaling pathway; fibroblast growth factor signaling pathway; interleukin-2 signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); anti-basement membrane glomerulonephritis (ortholog); bone disease (ortholog); FOUND IN apical dendrite (ortholog); axon (ortholog); cell body (ortholog) NW_004955403 49856056 49970800 + 102003931 AGCD01002951;AGCD01002952;AGCD01002953;GBCE01000568;XM_005373738;XM_005373739;XM_005373740;XM_005373741;XM_013514189;XM_013514191 XP_005373795;XP_005373796;XP_005373797;XP_005373798;XP_013369643;XP_013369645 MODEL 8704678 protein-coding Llph LLP homolog, long-term synaptic facilitation factor INVOLVED IN dendrite extension (ortholog); positive regulation of dendritic spine development (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog) NW_004955458 12785194 12791918 - 102023233 AGCD01047789;GBDF01120063;XM_005397449;XM_005397450;XM_005397451;XM_013520895 XP_005397506;XP_005397507;XP_005397508;XP_013376349 MODEL 153211029 protein-coding PLEKHO2 pleckstrin homology domain containing O2 9055997 protein-coding Rab12 RAB12, member RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); INVOLVED IN cellular response to type II interferon (ortholog); endosome to lysosome transport (ortholog); positive regulation of macroautophagy (ortholog); ASSOCIATED WITH Myocardial Ischemia (ortholog); FOUND IN autophagosome (ortholog); lysosome (ortholog); phagocytic vesicle (ortholog) NW_004955402 3102709 3109701 - 102028917 AGCD01000096;GBCB01005815;GBDK01084463;XM_013516234 XP_013371688 MODEL 8953516 pseudo LOC102008599 ATP synthase F(0) complex subunit C2, mitochondrial pseudogene NW_004955408 4475183 4478730 - 102008599 AGCD01008113 MODEL 39132573 snorna SNORA70 Small nucleolar RNA SNORA70 8778105 pseudo LOC102028718 leucine-rich repeat-containing protein 28 pseudogene NW_004955407 10964744 10965860 - 102028718 AGCD01007092 MODEL 8964357 pseudo LOC102023584 WW domain-binding protein 11 pseudogene NW_004955473 2379581 2381523 + 102023584 AGCD01053901 MODEL 39133463 snrna U4 U4 spliceosomal RNA 8730525 pseudo LOC102028057 40S ribosomal protein S12 pseudogene NW_004955406 30299269 30299666 + 102028057 AGCD01006363 MODEL 10177660 protein-coding LOC106147150 RING finger protein 113A-like NW_004955523 1388264 1390123 - 106147150 AGCD01068514;GBBH01101574;XM_013507140 XP_013362594 MODEL 8972957 protein-coding S1pr5 sphingosine-1-phosphate receptor 5 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN regulation of neuron differentiation (ortholog); PARTICIPATES IN sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); Experimental Diabetes Mellitus (ortholog); systemic scleroderma (ortholog); FOUND IN presynapse (ortholog) NW_004955495 1717549 1722257 - 102007029 AGCD01061714;AGCD01061715;AGCD01061716;GBDI01108035;XM_013505132 XP_013360586 MODEL 8961440 protein-coding Prkar2b protein kinase cAMP-dependent type II regulatory subunit beta ENCODES a protein that exhibits cAMP binding (ortholog); cAMP-dependent protein kinase inhibitor activity (ortholog); cAMP-dependent protein kinase regulator activity (ortholog); INVOLVED IN fatty acid metabolic process (ortholog); learning (ortholog); modulation of chemical synaptic transmission (ortholog); PARTICIPATES IN protein kinase A (PKA) signaling pathway; ASSOCIATED WITH congestive heart failure (ortholog); granulosa cell tumor (ortholog); obesity (ortholog); FOUND IN cAMP-dependent protein kinase complex (ortholog); centrosome (ortholog); ciliary base (ortholog) NW_004955410 11529530 11620085 + 102017752 AGCD01010826;AGCD01010827;AGCD01010828;AGCD01010829;GBCQ01036114;XM_013510492 XP_013365946 MODEL 8735023 protein-coding Sell selectin L ENCODES a protein that exhibits calcium ion binding (ortholog); cell adhesion molecule binding (ortholog); glycolipid binding (ortholog); INVOLVED IN calcium-dependent cell-cell adhesion (ortholog); cellular response to interleukin-8 (ortholog); heterotypic cell-cell adhesion (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); alcohol use disorder (ortholog); alcoholic hepatitis (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular region (ortholog) NW_004955462 7591997 7611408 + 102011515 AGCD01049308;GBBH01188171;XM_005398184;XM_005398185;XM_005398186 XP_005398241;XP_005398242;XP_005398243 MODEL 8897145 pseudo LOC102009743 tubulin alpha-3E chain pseudogene NW_004955429 3059738 3060342 - 102009743 AGCD01028454 MODEL 8995495 protein-coding LOC102030518 olfactory receptor 51B6 NW_004955414 21250147 21251085 + 102030518 AGCD01015411;XM_005380080 XP_005380137 MODEL 9058236 protein-coding LOC102026392 prostaglandin G/H synthase 2-like NW_004955406 26493442 26494171 - 102026392 AGCD01006252;GBBH01084645;XM_013503404 XP_013358858 MODEL 8703550 ncrna LOC102005651 uncharacterized LOC102005651 NW_004955449 5758290 5762221 + 102005651 AGCD01041942;XR_262490 MODEL 8744344 protein-coding Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 ENCODES a protein that exhibits CTPase activity (ortholog); GTPase activity (ortholog); ribonucleoside triphosphate phosphatase activity (ortholog); INVOLVED IN CTP catabolic process (ortholog); GTP metabolic process (ortholog); nucleobase-containing small molecule catabolic process (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog) NW_004955507 5552788 5594911 + 102016297 AGCD01065679;AGCD01065680;GBDF01113293;XM_005407671 XP_005407728 MODEL 8706978 protein-coding Sfrp4 secreted frizzled related protein 4 ENCODES a protein that exhibits Wnt-protein binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); decidualization (ortholog); female pregnancy (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); Experimental Arthritis (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955460 5654187 5666475 + 102026611 AGCD01048456;GBDJ01005445;XM_005397748 XP_005397805 MODEL 8943771 pseudo LOC102021863 uncharacterized LOC102021863 NW_004955465 6775792 6836185 + 102021863 AGCD01050448 MODEL 8907425 pseudo LOC102026017 acidic leucine-rich nuclear phosphoprotein 32 family member E pseudogene NW_004955422 22142218 22142933 - 102026017 AGCD01023146;XR_260934 MODEL 8849871 protein-coding Pdzk1ip1 PDZK1 interacting protein 1 INVOLVED IN D-glucose import across plasma membrane (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN transmembrane transporter complex (ortholog) NW_004955464 11339800 11344492 + 102009921 AGCD01050144;GBDJ01091555;XM_005398640 XP_005398697 MODEL 9020649 ncrna LOC102007113 uncharacterized LOC102007113 NW_004955415 15209941 15253124 + 102007113 AGCD01016333;AGCD01016334;AGCD01016335;GBDK01120163;XR_001233186 MODEL 8855712 protein-coding Slc7a2 solute carrier family 7 member 2 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); high-affinity L-arginine transmembrane transporter activity (ortholog); high-affinity L-ornithine transmembrane transporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); L-alpha-amino acid transmembrane transport (ortholog); L-amino acid transport (ortholog); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; glutaric aciduria type I pathway; hyperlysinemia pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); myoepithelioma (ortholog); FOUND IN cell junction (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955552 2117972 2141144 - 102023960 AGCD01072802;GBCB01039132;GBDK01322143;XM_013508606 XP_013364060 MODEL 8842610 protein-coding LOC102018934 neutrophil gelatinase-associated lipocalin-like NW_004955419 346746 382267 - 102018934 AGCD01019577;AGCD01019578;AGCD01019579;AGCD01019580;XM_013513094 XP_013368548 MODEL 8713164 protein-coding Prss56 serine protease 56 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); INVOLVED IN camera-type eye development (ortholog); proteolysis (ortholog); ASSOCIATED WITH angle-closure glaucoma (ortholog); cholangiocarcinoma (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955453 3440871 3446090 - 102005105 AGCD01044658;AGCD01044659;GBBH01030283;GBBH01042828;XM_013519998 XP_013375452 MODEL 9059022 protein-coding LOC102029093 melanoma-associated antigen 10-like NW_004955498 8084770 8088207 + 102029093 AGCD01063166;GBDF01082607;XM_005406497 XP_005406554 MODEL 8857570 ncrna LOC102010525 uncharacterized LOC102010525 NW_004955440 3346013 3352979 + 102010525 AGCD01036240;GBBH01169042;XR_262002 MODEL 8815736 protein-coding LOC102012892 uncharacterized LOC102012892 NW_004955526 2993975 3028797 + 102012892 AGCD01069325;AGCD01069326;XM_013507354 XP_013362808 MODEL 8709854 protein-coding Ptk6 protein tyrosine kinase 6 ENCODES a protein that exhibits identical protein binding (ortholog); non-membrane spanning protein tyrosine kinase activity (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN cell migration (ortholog); cellular response to retinoic acid (ortholog); intestinal epithelial cell differentiation (ortholog); ASSOCIATED WITH keratoconus (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955528 687996 695596 + 102009754 AGCD01069542;GBCQ01083858;XM_005409962 XP_005410019 MODEL 8718506 pseudo LOC102010880 methylcrotonoyl-CoA carboxylase beta chain, mitochondrial pseudogene NW_004955410 29866734 29868389 - 102010880 AGCD01011297 MODEL 39133464 snrna U4 U4 spliceosomal RNA 8927827 pseudo LOC102028064 elongation factor 1-alpha 1-like NW_004955461 576468 599831 - 102028064 AGCD01048795;AGCD01048796 MODEL 8764493 ncrna LOC102017803 uncharacterized LOC102017803 NW_004955510 6353074 6359985 - 102017803 AGCD01066305;GBCQ01116243;XR_264413 MODEL 9018296 protein-coding Ppp1r13l protein phosphatase 1 regulatory subunit 13 like ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cardiac muscle contraction (ortholog); cardiac right ventricle morphogenesis (ortholog); embryonic camera-type eye development (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH ARRHYTHMOGENIC CARDIOMYOPATHY WITH VARIABLE ECTODERMAL ABNORMALITIES (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); autosomal recessive disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955555 2373088 2390973 - 102022549 AGCD01073148;AGCD01073149;GBCE01005109;GBCQ01038365;XM_013508705;XM_013508706;XM_013508707 XP_013364159;XP_013364160;XP_013364161 MODEL 10218770 ncrna LOC106148245 uncharacterized LOC106148245 NW_004955418 11288191 11293223 - 106148245 AGCD01018999;XR_001233516;XR_001233517;XR_001233518 MODEL 8844852 pseudo LOC102011738 TBC1 domain family member 31-like NW_004955407 28180371 28202117 - 102011738 AGCD01007576;AGCD01007577 MODEL 8885451 ncrna LOC102006744 uncharacterized LOC102006744 NW_004955408 16899632 16911435 - 102006744 AGCD01008448;GBBH01062027;XR_001232354 MODEL 8971175 protein-coding Bzw2 basic leucine zipper and W2 domains 2 INVOLVED IN regulation of translational initiation (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); COVID-19 (ortholog); lung adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog) NW_004955410 19833008 19874647 + 102022680 AGCD01011031;GBDI01063049;XM_005377337 XP_005377394 MODEL 8980830 protein-coding Plekhs1 pleckstrin homology domain containing S1 ASSOCIATED WITH disease of cellular proliferation (ortholog); glucose intolerance (ortholog); Insulin Resistance (ortholog) NW_004955431 18745990 18798517 + 102008969 AGCD01030434;AGCD01030435;GBDI01020069;XM_005387803;XM_013515824;XM_013515825;XM_013515826;XM_013515828;XM_013515829;XM_013515830;XM_013515831;XR_001234618;XR_001234619;XR_001234620;XR_001234621 XP_005387860;XP_013371278;XP_013371279;XP_013371280;XP_013371282;XP_013371283;XP_013371284;XP_013371285 MODEL 8877149 pseudo LOC102011265 E3 ubiquitin-protein ligase RNF13 pseudogene NW_004955450 12920957 12924698 - 102011265 AGCD01042721 MODEL 8877429 protein-coding Sohlh1 spermatogenesis and oogenesis specific basic helix-loop-helix 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN cell differentiation (ortholog); oocyte differentiation (ortholog); oogenesis (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); hypogonadism (ortholog); ovarian dysgenesis 5 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955513 4767591 4771654 + 102020830 AGCD01066939;GBDF01225167;XM_005408545 XP_005408602 MODEL 8772321 protein-coding Timmdc1 translocase of inner mitochondrial membrane domain containing 1 ASSOCIATED WITH Leigh disease (ortholog); nuclear type mitochondrial complex I deficiency 1 (ortholog); nuclear type mitochondrial complex I deficiency 31 (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955427 19208029 19234763 + 102018005 AGCD01027360;AGCD01027361;AGCD01027362;GBDF01223947;XM_005386443;XM_013515089 XP_005386500;XP_013370543 MODEL 8723562 protein-coding Wdr83os WD repeat domain 83 opposite strand ENCODES a protein that exhibits protein folding chaperone (ortholog); INVOLVED IN multi-pass transmembrane protein insertion into ER membrane (ortholog); protein insertion into ER membrane (ortholog); ASSOCIATED WITH NEURODEVELOPMENTAL DISORDER WITH VARIABLE FAMILIAL HYPERCHOLANEMIA (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); multi-pass translocon complex (ortholog); protein folding chaperone complex (ortholog) NW_004955415 31772401 31773916 - 102018721 AGCD01016697;GBCQ01011781;XM_005381018 XP_005381075 MODEL 8985855 protein-coding LOC102024577 olfactory receptor 13-like NW_004955491 398929 399861 + 102024577 AGCD01060332;XM_005404881 XP_005404938 MODEL 8786703 protein-coding Smo smoothened, frizzled class receptor ENCODES a protein that exhibits cholesterol binding (ortholog); G protein-coupled receptor activity (ortholog); oxysterol binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); alpha-tubulin acetylation (ortholog); anterior/posterior pattern specification (ortholog); PARTICIPATES IN altered Hedgehog signaling pathway; Hedgehog signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Adenomatous Polyps (ortholog); ameloblastoma (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); axonal growth cone (ortholog); caveola (ortholog) NW_004955479 9963377 9991670 + 102024563 AGCD01056511;AGCD01056512;AGCD01056513;GBBH01143091;GBDF01304674;XM_013503270 XP_013358724 MODEL 9044027 protein-coding Rgs16 regulator of G protein signaling 16 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog) NW_004955406 21439536 21444822 - 102018361 AGCD01006128;GBDI01354177;XM_005375005 XP_005375062 MODEL 8744866 protein-coding Slc22a3 solute carrier family 22 member 3 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); dopamine:sodium symporter activity (ortholog); monoamine transmembrane transporter activity (ortholog); INVOLVED IN cellular detoxification (ortholog); choline transport (ortholog); dopamine uptake (ortholog); PARTICIPATES IN lamivudine pharmacokinetics pathway; metformin pharmacokinetics pathway; ASSOCIATED WITH Coxsackievirus Infections (ortholog); Kidney Neoplasms (ortholog); myocarditis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); endomembrane system (ortholog) NW_004955439 20367324 20476891 - 102012365 AGCD01036111;AGCD01036112;AGCD01036113;AGCD01036114;GBBH01205688;GBDJ01352885;XM_005390702 XP_005390759 MODEL 8999601 protein-coding LOC102015899 kallikrein-4-like NW_004955559 349640 357295 - 102015899 AGCD01073578;XM_005412969 XP_005413026 MODEL 8802614 ncrna LOC102030520 uncharacterized LOC102030520 NW_004955472 214972 219207 + 102030520 AGCD01053322;GBBH01103502;XR_263540 MODEL 8957179 protein-coding Pcgf5 polycomb group ring finger 5 ENCODES a protein that exhibits histone H2AK119 ubiquitin ligase activity (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); random inactivation of X chromosome (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN centrosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955425 1913711 1980800 - 102008959 AGCD01025249;GBCB01043679;XM_013514859;XM_013514860;XM_013514861;XM_013514862;XM_013514863;XR_001234288 XP_013370313;XP_013370314;XP_013370315;XP_013370316;XP_013370317 MODEL 8990038 protein-coding Selp selectin P ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); fucose binding (ortholog); INVOLVED IN calcium-dependent cell-cell adhesion (ortholog); cell-cell adhesion (ortholog); heterophilic cell-cell adhesion (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); acute necrotizing pancreatitis (ortholog); allergic disease (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular region (ortholog); membrane (ortholog) NW_004955462 7658371 7692870 + 102012290 AGCD01049309;GBBH01131804;XM_005398187 XP_005398244 MODEL 8803459 protein-coding Rbmx2 RNA binding motif protein X-linked 2 INVOLVED IN mRNA splicing, via spliceosome (ortholog); FOUND IN nuclear membrane (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955473 4654257 4664419 - 102006339 AGCD01053954;GBDF01075377;XM_005401234 XP_005401291 MODEL 8914181 protein-coding Lman1 lectin, mannose binding 1 ENCODES a protein that exhibits identical protein binding (ortholog); metal ion binding (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); endoplasmic reticulum organization (ortholog); gene expression (ortholog); PARTICIPATES IN protein secretory pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); factor V deficiency (ortholog); factor XIII deficiency (ortholog); FOUND IN cargo receptor complex (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); endoplasmic reticulum (ortholog) NW_004955402 43465556 43495789 - 102014193 AGCD01001073;GBDI01115194;XM_005373001;XM_013511080 XP_005373058;XP_013366534 MODEL 8840875 protein-coding Rnaseh1 ribonuclease H1 ENCODES a protein that exhibits identical protein binding (ortholog); RNA-DNA hybrid ribonuclease activity (ortholog); INVOLVED IN mitochondrial DNA replication (ortholog); ASSOCIATED WITH autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 2 (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog); nucleus (ortholog) NW_004955487 3808426 3815682 + 102017130 AGCD01059294;GBDF01082488;XM_005404371 XP_005404428 MODEL 8927906 protein-coding LOC102005653 cytochrome c oxidase subunit 5A, mitochondrial ENCODES a protein that exhibits cytochrome-c oxidase activity (ortholog); ASSOCIATED WITH COVID-19 (ortholog); mitochondrial complex IV deficiency nuclear type 20 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955450 3036387 3049121 + 102005653 AGCD01042420;GBCQ01008019;XM_005393528;XM_005393529 XP_005393585;XP_005393586 MODEL 8902864 protein-coding LOC102008603 forkhead box protein L1 NW_004955460 8202937 8204916 + 102008603 AGCD01048513;GBDF01028920;XM_005397773 XP_005397830 MODEL 8834839 protein-coding Ppp1r14a protein phosphatase 1 regulatory inhibitor subunit 14A INVOLVED IN cellular response to xenobiotic stimulus (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); Mesothelioma (ortholog); stomach cancer (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955468 1174946 1179289 + 102019585 AGCD01051760;GBCE01159119;XM_005399866 XP_005399923 MODEL 39131734 snorna SNORA70 Small nucleolar RNA SNORA70 8866090 protein-coding Rab13 RAB13, member RAS oncogene family ENCODES a protein that exhibits cAMP-dependent protein kinase inhibitor activity (ortholog); G protein activity (ortholog); GTP binding (ortholog); INVOLVED IN bicellular tight junction assembly (ortholog); cellular response to insulin stimulus (ortholog); cortical actin cytoskeleton organization (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN bicellular tight junction (ortholog); cell-cell junction (ortholog); cytoplasmic vesicle (ortholog) NW_004955545 590021 594191 - 102026260 AGCD01071802;GBDJ01137960;XM_005411465;XM_013508365 XP_005411522;XP_013363819 MODEL 8813165 protein-coding Ranbp1 RAN binding protein 1 ENCODES a protein that exhibits GDP-dissociation inhibitor activity (ortholog); INVOLVED IN cellular response to leptomycin B (ortholog); cellular response to xenobiotic stimulus (ortholog); positive regulation of mitotic centrosome separation (ortholog); PARTICIPATES IN CRM1 export pathway; ASSOCIATED WITH dilated cardiomyopathy (ortholog); human immunodeficiency virus infectious disease (ortholog); Kidney Neoplasms (ortholog); FOUND IN axon cytoplasm (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955442 17985456 17992945 - 102024288 AGCD01037991;GBDF01008685;XM_005391735;XM_005391736 XP_005391792;XP_005391793 MODEL 10302012 ncrna LOC106148246 uncharacterized LOC106148246 NW_004955418 11208452 11226982 + 106148246 AGCD01018997;XR_001233519;XR_001233520 MODEL 9015682 ncrna LOC102010530 uncharacterized LOC102010530 NW_004955446 355157 517018 + 102010530 AGCD01039940;AGCD01039941;AGCD01039942;AGCD01039943;AGCD01039944;GBDF01235331;XR_001235683;XR_262362 MODEL 10121486 ncrna LOC106149987 uncharacterized LOC106149987 NW_004955459 11592159 11647074 + 106149987 AGCD01048233;GBDF01277077;XR_001236494 MODEL 8961855 protein-coding LOC102009744 lipocalin-1-like NW_004955513 2591903 2597295 + 102009744 AGCD01066882;GBBH01003724;XM_005408420 XP_005408477 MODEL 8980792 protein-coding Tra2b transformer 2 beta homolog ENCODES a protein that exhibits identical protein binding (ortholog); mRNA binding (ortholog); poly-purine tract binding (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cerebral cortex regionalization (ortholog); embryonic brain development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); macular degeneration (ortholog); FOUND IN nuclear inner membrane (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955420 21707618 21728186 + 102008321 AGCD01021159;GBDF01002404;XM_005383286 XP_005383343 MODEL 8762999 protein-coding Trmt9b tRNA methyltransferase 9B (putative) ENCODES a protein that exhibits tRNA methyltransferase activity (ortholog) NW_004955463 4035145 4096996 - 102015816 AGCD01049600;AGCD01049601;GBDJ01298592;XM_013521538;XM_013521539;XM_013521540;XM_013521541;XM_013521542;XM_013521543;XM_013521544;XM_013521545;XM_013521546;XM_013521547;XM_013521548;XM_013521549;XM_013521550;XM_013521551;XM_013521552;XM_013521553;XM_013521554;XM_013521555;XM_013521556;XM_013521557;XM_013521558;XM_013521559 XP_013376992;XP_013376993;XP_013376994;XP_013376995;XP_013376996;XP_013376997;XP_013376998;XP_013376999;XP_013377000;XP_013377001;XP_013377002;XP_013377003;XP_013377004;XP_013377005;XP_013377006;XP_013377007;XP_013377008;XP_013377009;XP_013377010;XP_013377011;XP_013377012;XP_013377013 MODEL 8708171 ncrna LOC102027381 uncharacterized LOC102027381 NW_004955456 14118331 14119176 + 102027381 AGCD01046633;GBDJ01068818;XR_262900 MODEL 39133465 snrna U4 U4 spliceosomal RNA 8745670 protein-coding Ptk7 protein tyrosine kinase 7 (inactive) ENCODES a protein that exhibits ATP binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); axis elongation (ortholog); cell migration (ortholog); PARTICIPATES IN Wnt signaling, the planar cell polarity pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cell-cell junction (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955437 9037933 9094237 + 102019323 AGCD01034515;GBDK01100991;XM_005390133;XM_013516906 XP_005390190;XP_013372360 MODEL 9012956 protein-coding Prkca protein kinase C alpha ENCODES a protein that exhibits calcium,diacylglycerol-dependent serine/threonine kinase activity (ortholog); diacylglycerol-dependent serine/threonine kinase activity (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to carbohydrate stimulus (ortholog); central nervous system neuron axonogenesis (ortholog); chondrocyte differentiation (ortholog); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH brain ischemia (ortholog); Breast Neoplasms (ortholog); Cardiomegaly (ortholog); FOUND IN alphav-beta3 integrin-PKCalpha complex (ortholog); apical part of cell (ortholog); axon (ortholog) NW_004955478 5686639 6090356 + 102026217 AGCD01055884;AGCD01055885;AGCD01055886;AGCD01055887;GBDF01178284;GBDF01178288;XM_013503220;XM_013503221 XP_013358674;XP_013358675 MODEL 8774173 ncrna LOC102026393 uncharacterized LOC102026393 NW_004955407 41056414 41066079 + 102026393 AGCD01007854;GBBH01203143;XR_259637 MODEL 8944457 pseudo LOC102003871 transcription and mRNA export factor ENY2 pseudogene NW_004955418 2196164 2198005 - 102003871 AGCD01018751;XM_005382119 MODEL 8810394 ncrna LOC102007114 uncharacterized LOC102007114 NW_004955476 1399542 1400885 - 102007114 AGCD01055205;GBDF01224897;XR_001230779 MODEL 8845226 pseudo LOC102021865 histone-lysine N-methyltransferase SUV39H2-like NW_004955466 11408957 11433268 - 102021865 AGCD01051093 MODEL 8832670 ncrna LOC102026018 uncharacterized LOC102026018 NW_004955495 1270624 1272616 + 102026018 AGCD01061678;GBDF01262339;XR_264132 MODEL 8891028 protein-coding Slc7a3 solute carrier family 7 member 3 ENCODES a protein that exhibits basic amino acid transmembrane transporter activity (ortholog); L-arginine transmembrane transporter activity (ortholog); L-lysine transmembrane transporter activity (ortholog); INVOLVED IN L-arginine import across plasma membrane (ortholog); L-arginine transmembrane transport (ortholog); L-lysine import across plasma membrane (ortholog); FOUND IN plasma membrane (ortholog) NW_004955475 10457859 10463828 - 102026632 AGCD01055096;GBDJ01316302;XM_005401634 XP_005401691 MODEL 9000915 protein-coding Entpd8 ectonucleoside triphosphate diphosphohydrolase 8 ENCODES a protein that exhibits ADP phosphatase activity (ortholog); apyrase activity (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN nucleoside diphosphate biosynthetic process (ortholog); nucleoside monophosphate biosynthetic process (ortholog); ribonucleoside diphosphate catabolic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; FOUND IN membrane (ortholog); plasma membrane (ortholog) NW_004955513 5352843 5357671 - 102014159 AGCD01066968;GBCQ01038627;XM_005408613;XM_013506722 XP_005408670;XP_013362176 MODEL 8897366 protein-coding LOC102018935 translation initiation factor IF-2-like NW_004955485 9778432 9781686 - 102018935 AGCD01058781;GBBH01012083;XM_005403936 XP_005403993 MODEL 9044170 protein-coding Selplg selectin P ligand ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN cellular response to interleukin-6 (ortholog); leukocyte adhesive activation (ortholog); leukocyte migration (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); carotid artery disease (ortholog); colitis (ortholog); FOUND IN plasma membrane (ortholog); plasma membrane raft (ortholog); uropod (ortholog) NW_004955455 9883271 9892572 - 102025759 AGCD01045931;AGCD01045932;GBDI01121877;XM_005396467;XM_005396469;XM_005396472 XP_005396524;XP_005396526;XP_005396529 MODEL 39131478 protein-coding S1PR5 sphingosine-1-phosphate receptor 5 10359248 pseudo LOC106147151 ribosome production factor 2 homolog pseudogene NW_004955523 1515879 1517585 - 106147151 AGCD01068523 MODEL 8901121 pseudo LOC102029094 farnesyl pyrophosphate synthase pseudogene NW_004955424 21831670 21846453 + 102029094 AGCD01024909;AGCD01024910;AGCD01024911 MODEL 39131367 protein-coding C10orf143 chromosome 10 open reading frame 143 8773973 protein-coding LOC102012894 A-kinase anchor protein 17B-like NW_004955534 648006 696921 + 102012894 AGCD01070461;AGCD01070462;AGCD01070463;AGCD01070464;AGCD01070465;AGCD01070466;AGCD01070467;GBBH01217459;XM_005410447;XM_005410448 XP_005410504;XP_005410505 MODEL 8979047 protein-coding Plet1 placenta expressed transcript 1 INVOLVED IN negative regulation of cell-matrix adhesion (ortholog); positive regulation of cell migration (ortholog); wound healing, spreading of epidermal cells (ortholog); FOUND IN apical plasma membrane (ortholog); external side of plasma membrane (ortholog) NW_004955412 13902940 13912761 - 102030508 AGCD01012847;GBDJ01016895;XM_005378121 XP_005378178 MODEL 8983042 protein-coding Sohlh2 spermatogenesis and oogenesis specific basic helix-loop-helix 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN cell differentiation (ortholog); oocyte differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog) NW_004955431 9874783 9952044 + 102015557 AGCD01030196;AGCD01030197;AGCD01030198;AGCD01030199;GBDF01039703;XM_013515730 XP_013371184 MODEL 9065184 protein-coding LOC102017804 vomeronasal type-1 receptor 90-like NW_004955429 12364461 12365522 - 102017804 AGCD01028715;XM_005387247 XP_005387304 MODEL 8786840 pseudo LOC102028722 ribosome maturation protein SBDS pseudogene NW_004955458 4408152 4408803 - 102028722 AGCD01047411 MODEL 8964944 protein-coding LOC102015901 vomeronasal type-1 receptor 2-like NW_004955569 988836 989759 - 102015901 AGCD01074631;XM_005413516 XP_005413573 MODEL 8792317 protein-coding Sfrp5 secreted frizzled related protein 5 INVOLVED IN convergent extension involved in axis elongation (ortholog); digestive tract morphogenesis (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog) NW_004955507 3836607 3841910 - 102007576 AGCD01065638;GBDI01216661;XM_005407640 XP_005407697 MODEL 8951094 ncrna LOC102023590 uncharacterized LOC102023590 NW_004955416 31600128 31619543 - 102023590 AGCD01017765;AGCD01017766;GBDF01122136;XR_001233369;XR_001233370;XR_001233371 MODEL 10388026 protein-coding Prss57 serine protease 57 ENCODES a protein that exhibits heparin binding (ortholog); serine-type peptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH COVID-19 (ortholog); long QT syndrome (ortholog); FOUND IN azurophil granule lumen (ortholog); extracellular region (ortholog) NW_004955495 7067844 7077048 + 106146768 AGCD01062117;XM_013505061 XP_013360515 MODEL 8794244 protein-coding LOC102019345 formin-like protein 16 NW_004955450 7449780 7452569 - 102019345 AGCD01042538;GBDK01081219;XM_005393672 XP_005393729 MODEL 9064356 pseudo LOC102008604 calcyclin-binding protein pseudogene NW_004955460 11101580 11102535 - 102008604 AGCD01048629;XR_263056 MODEL 8847174 pseudo LOC102010891 ras-related protein Rab-43 pseudogene NW_004955413 12621970 12622932 - 102010891 AGCD01013994;XM_005379601 MODEL 8808506 protein-coding Ppp1r14b protein phosphatase 1 regulatory inhibitor subunit 14B ENCODES a protein that exhibits phosphatase inhibitor activity (ortholog); protein phosphatase regulator activity (ortholog); ASSOCIATED WITH melanoma (ortholog) NW_004955422 20832224 20834317 + 102022305 AGCD01023092;GBDI01006659;GBDJ01006929;XM_005384972 XP_005385029 MODEL 8998886 protein-coding Saal1 serum amyloid A like 1 INVOLVED IN positive regulation of synoviocyte proliferation (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955414 32853291 32868061 - 102015191 AGCD01015784;GBDJ01386150;XM_005380399 XP_005380456 MODEL 8973552 pseudo LOC102024579 heterogeneous nuclear ribonucleoprotein H2-like NW_004955493 2976417 2978113 + 102024579 AGCD01060974 MODEL 8805802 protein-coding Timp1 TIMP metallopeptidase inhibitor 1 ENCODES a protein that exhibits cytokine activity (ortholog); metalloendopeptidase inhibitor activity (ortholog); peptidase inhibitor activity (ortholog); INVOLVED IN cartilage development (ortholog); cellular response to acetaldehyde (ortholog); cellular response to peptide (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); adult respiratory distress syndrome (ortholog); alcoholic liver cirrhosis (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955516 507113 511360 - 102013747 AGCD01067385;GBCQ01096551;XM_005408935;XM_005408936;XM_013506915;XM_013506916 XP_005408992;XP_005408993;XP_013362369;XP_013362370 MODEL 8822319 pseudo LOC102029099 protein S100-A10-like NW_004955511 2350372 2350761 - 102029099 AGCD01066399 MODEL 8886161 pseudo LOC102010531 60S ribosomal protein L37 pseudogene NW_004955446 2571700 2571990 + 102010531 AGCD01039985 MODEL 8956076 protein-coding Ranbp10 RAN binding protein 10 ENCODES a protein that exhibits beta-tubulin binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN microtubule cytoskeleton organization (ortholog); ASSOCIATED WITH Disease Progression (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); Stomach Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); microtubule cytoskeleton (ortholog); nucleus (ortholog) NW_004955484 8889349 8960122 + 102023702 AGCD01058400;AGCD01058401;GBDF01123418;XM_005403623 XP_005403680 MODEL 9008352 ncrna LOC102027384 uncharacterized LOC102027384 NW_004955409 8465758 8471068 + 102027384 AGCD01009415;GBBH01037258;XR_259759 MODEL 9003567 protein-coding Slc22a31 solute carrier family 22 member 31 NW_004955541 2894053 2897032 - 102028132 AGCD01071430;GBCQ01164308;XM_013507988 XP_013363442 MODEL 9004211 protein-coding Pdzrn3 PDZ domain containing ring finger 3 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN neuromuscular junction development (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH Childhood Schizophrenia (ortholog); Dwarfism (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); neuromuscular junction (ortholog) NW_004955421 14648436 14878759 + 102026121 AGCD01021959;AGCD01021960;AGCD01021961;GBBH01126566;GBCE01169321;XM_013513763 XP_013369217 MODEL 8833359 protein-coding Rgs17 regulator of G protein signaling 17 INVOLVED IN response to amphetamine (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog) NW_004955439 8687775 8805229 + 102025048 AGCD01035806;AGCD01035807;AGCD01035808;AGCD01035809;AGCD01035810;AGCD01035811;AGCD01035812;AGCD01035813;GBDF01116147;XM_005390564;XM_005390565;XM_013517293 XP_005390621;XP_005390622;XP_013372747 MODEL 39133466 snrna U4 U4 spliceosomal RNA 10156556 protein-coding Ptma prothymosin alpha ENCODES a protein that exhibits calcium ion binding (ortholog); DNA-binding transcription factor binding (ortholog); histone binding (ortholog); INVOLVED IN chromatin organization (ortholog); negative regulation of apoptotic process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH adenoma (ortholog); Lung Neoplasms (ortholog); polycystic kidney disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955453 4036503 4037788 - 106149798 AGCD01044672;GBBH01002333;GBDF01000055;XM_013519995 XP_013375449 MODEL 8986311 protein-coding Rbmxl2 RBMX like 2 FOUND IN nucleus (ortholog) NW_004955414 22919632 22921150 + 102015005 AGCD01015485;AGCD01015486;GBDF01083890;XM_005380515 XP_005380572 MODEL 8869875 ncrna LOC102021868 uncharacterized LOC102021868 NW_004955413 17831133 17838059 - 102021868 AGCD01014164;GBDF01081370;XR_260086 MODEL 39131735 snorna SNORA70 Small nucleolar RNA SNORA70 9048480 protein-coding LOC102005656 retinol dehydrogenase 7-like NW_004955641 46039 49565 - 102005656 AGCD01077703;AGCD01077704;XM_005415046 XP_005415103 MODEL 8898484 protein-coding Rnaseh2a ribonuclease H2 subunit A ENCODES a protein that exhibits RNA-DNA hybrid ribonuclease activity (ortholog); INVOLVED IN mismatch repair (ortholog); RNA catabolic process (ortholog); ASSOCIATED WITH Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 4 (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); ribonuclease H2 complex (ortholog) NW_004955415 31884533 31894159 + 102022280 AGCD01016700;GBCE01123368;XM_005381029;XM_005381030;XM_005381031 XP_005381086;XP_005381087;XP_005381088 MODEL 8822598 pseudo LOC102011274 translocation protein SEC62 pseudogene NW_004955453 11024593 11120561 + 102011274 AGCD01044797;AGCD01044798;AGCD01044799;AGCD01044800 MODEL 8953899 protein-coding Rab14 RAB14, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN apical protein localization (ortholog); body fluid secretion (ortholog); early endosome to Golgi transport (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; FOUND IN alveolar lamellar body (ortholog); apical plasma membrane (ortholog); cilium (ortholog) NW_004955419 6790110 6812870 + 102018832 AGCD01019864;AGCD01019865;GBDF01058003;XM_005382571;XM_005382572 XP_005382628;XP_005382629 MODEL 8722859 pseudo LOC102018936 MLN64 N-terminal domain homolog pseudogene NW_004955420 268901 269761 + 102018936 AGCD01020539 MODEL 8703281 protein-coding Slc7a4 solute carrier family 7 member 4 NW_004955442 19258901 19263317 + 102020617 AGCD01038045;GBDF01126826;XM_005391817;XM_005391818 XP_005391874;XP_005391875 MODEL 10122161 ncrna LOC106148247 uncharacterized LOC106148247 NW_004955402 675349 676508 + 106148247 AGCD01000028;GBDF01081515;XR_001233525 MODEL 8861434 protein-coding Wdr86 WD repeat domain 86 NW_004955491 5739715 5765469 - 102008115 AGCD01060499;AGCD01060500;AGCD01060501;GBCE01031431;GBCQ01153453;XM_005404830 XP_005404887 MODEL 39131540 protein-coding C11orf53 chromosome 11 open reading frame 53 8742719 pseudo LOC102030521 histone acetyltransferase KAT7-like NW_004955414 17260474 17262439 + 102030521 AGCD01015236 MODEL 9046023 pseudo LOC102012900 probable G-protein coupled receptor 160 NW_004955440 2492344 2496582 - 102012900 AGCD01036208 MODEL 8910487 protein-coding LOC102011741 olfactory receptor 12-like NW_004955458 2309459 2310406 + 102011741 AGCD01047223;XM_005397238 XP_005397295 MODEL 9018057 protein-coding Plg plasminogen ENCODES a protein that exhibits apolipoprotein binding (ortholog); endopeptidase activity (ortholog); enzyme binding (ortholog); INVOLVED IN blood coagulation (ortholog); collagen catabolic process (ortholog); extracellular matrix disassembly (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH acute kidney failure (ortholog); atypical hemolytic-uremic syndrome (ortholog); C1 inhibitor deficiency (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular region (ortholog) NW_004955439 20317814 20366724 + 102011248 AGCD01036109;AGCD01036110;AGCD01036111;GBDI01245139;XM_005390699;XM_005390700 XP_005390756;XP_005390757 MODEL 8815556 protein-coding LOC102003872 olfactory receptor 1A1-like NW_004955481 248188 249135 + 102003872 AGCD01056784;XM_005402915 XP_005402972 MODEL 8704464 protein-coding Son SON DNA and RNA binding protein ENCODES a protein that exhibits RNA binding (ortholog); RS domain binding (ortholog); INVOLVED IN microtubule cytoskeleton organization (ortholog); mitotic cytokinesis (ortholog); mRNA processing (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); congenital anomalies of kidney and urinary tract syndrome with or without hearing loss, abnormal ears, or developmental delay (ortholog); Developmental Disabilities (ortholog); FOUND IN nuclear speck (ortholog) NW_004955407 32974656 33007073 + 102016237 AGCD01007692;AGCD01007693;GBDF01053041;XM_013504280;XM_013504282;XM_013504287;XM_013504291;XM_013504293 XP_013359734;XP_013359736;XP_013359741;XP_013359745;XP_013359747 MODEL 8924926 protein-coding Lman1l lectin, mannose binding 1 like ASSOCIATED WITH prostate cancer (ortholog) NW_004955450 3111004 3123266 - 102009444 AGCD01042422;GBDJ01215387;XM_005393541;XM_005393542 XP_005393598;XP_005393599 MODEL 8710483 protein-coding LOC102006745 chromosome unknown open reading frame, human C5orf24 FOUND IN nucleoplasm (ortholog) NW_004955408 30043402 30054015 + 102006745 AGCD01008792;AGCD01008793;GBDI01171520;XM_005376466;XM_005376467;XM_005376468 XP_005376523;XP_005376524;XP_005376525 MODEL 9013423 ncrna LOC102015905 uncharacterized LOC102015905 NW_004955402 15836454 15841598 + 102015905 AGCD01000465;GBDF01025169;XR_259054 MODEL 8813987 ncrna LOC102026020 uncharacterized LOC102026020 NW_004955423 17249611 17260259 - 102026020 AGCD01023851;AGCD01023852;GBDF01050009;XR_260981 MODEL 8835860 protein-coding Entr1 endosome associated trafficking regulator 1 INVOLVED IN endocytic recycling (ortholog); positive regulation of cilium assembly (ortholog); positive regulation of protein localization to cilium (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); early endosome (ortholog) NW_004955513 4322002 4329479 + 102026141 AGCD01066925;AGCD01066926;GBCB01003691;GBDF01008499;XM_005408649 XP_005408706 MODEL 8723581 protein-coding Sem1 SEM1 26S proteasome subunit ENCODES a protein that exhibits ubiquitin binding (ortholog); INVOLVED IN double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH squamous cell carcinoma (ortholog); FOUND IN integrator complex (ortholog); nucleus (ortholog); proteasome complex (ortholog) NW_004955432 13134359 13156402 - 102019940 AGCD01031004;AGCD01031005;GBDF01043233;XM_005388071;XM_005388072 XP_005388128;XP_005388129 MODEL 9025490 protein-coding Sfswap splicing factor SWAP INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); mRNA 5'-splice site recognition (ortholog); negative regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog) NW_004955482 808684 871377 - 102026112 AGCD01057189;GBDI01121728;XM_005402976;XM_005402977;XM_005402978;XM_005402980;XM_005402981;XM_005402983;XM_005402984 XP_005403033;XP_005403034;XP_005403035;XP_005403037;XP_005403038;XP_005403040;XP_005403041 MODEL 8778799 protein-coding LOC102028067 vomeronasal type-1 receptor 4-like NW_004955465 12891704 12892654 - 102028067 AGCD01050567;XM_005398999 XP_005399056 MODEL 9062298 protein-coding Smoc1 SPARC related modular calcium binding 1 ENCODES a protein that exhibits extracellular matrix binding (ortholog); INVOLVED IN extracellular matrix organization (ortholog); eye development (ortholog); limb development (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); microphthalmia with limb anomalies (ortholog); FOUND IN basement membrane (ortholog) NW_004955466 378277 528260 - 102013810 AGCD01050660;AGCD01050661;AGCD01050662;GBDI01264757;GBDJ01174419;XM_005399241;XM_013521998;XM_013521999 XP_005399298;XP_013377452;XP_013377453 MODEL 10384267 ncrna LOC106149988 uncharacterized LOC106149988 NW_004955459 8729835 8753453 + 106149988 AGCD01048145;GBDJ01118067;XR_001236496 MODEL 8943653 ncrna LOC102008606 uncharacterized LOC102008606 NW_004955410 29146901 29160996 - 102008606 AGCD01011276;GBDF01148292;XR_001232701;XR_001232702 MODEL 8799882 protein-coding LOC102010896 protocadherin beta-4-like NW_004955415 12626696 12673195 - 102010896 AGCD01016208;AGCD01016209;AGCD01016210;AGCD01016211;AGCD01016212;AGCD01016213;AGCD01016214;AGCD01016215;AGCD01016216;AGCD01016217;AGCD01016218;GBDJ01233417;XM_013512127 XP_013367581 MODEL 8887487 protein-coding Trabd TraB domain containing ENCODES a protein that exhibits mitochondrion-mitochondrion outer membrane tether activity (ortholog); INVOLVED IN mitochondrial fusion (ortholog); protein localization to mitochondrion (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog); TOM complex (ortholog) NW_004955413 33229796 33233686 + 102023348 AGCD01014658;GBCE01114750;GBCQ01098684;XM_005379547;XM_005379548 XP_005379604;XP_005379605 MODEL 9053466 protein-coding Trmu tRNA mitochondrial 2-thiouridylase ENCODES a protein that exhibits tRNA-5-taurinomethyluridine 2-sulfurtransferase activity (ortholog); ASSOCIATED WITH aminoglycoside-induced deafness (ortholog); genetic disease (ortholog); infantile liver failure syndrome (ortholog); FOUND IN mitochondrion (ortholog) NW_004955413 30440014 30453860 + 102012183 AGCD01014608;GBDF01131064;XM_005379512;XM_013511394;XM_013511395;XM_013511396 XP_005379569;XP_013366848;XP_013366849;XP_013366850 MODEL 8762010 protein-coding Pcgf6 polycomb group ring finger 6 INVOLVED IN chromatin remodeling (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN nucleus (ortholog); PcG protein complex (ortholog); PRC1 complex (ortholog) NW_004955485 7196626 7228918 + 102005599 AGCD01058643;AGCD01058644;AGCD01058645;AGCD01058646;AGCD01058647;AGCD01058648;GBCB01109610;GBDF01156121;XM_005403806 XP_005403863 MODEL 8758606 protein-coding LOC102024582 olfactory receptor-like protein OLF3 NW_004955494 69060 69994 - 102024582 AGCD01061352;GBDF01269797;XM_013504914 XP_013360368 MODEL 8923162 pseudo LOC102026394 rho GTPase-activating protein 11A-like NW_004955407 32018926 32022015 + 102026394 AGCD01007668 MODEL 8787312 protein-coding Slc7a5 solute carrier family 7 member 5 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); antiporter activity (ortholog); aromatic amino acid transmembrane transporter activity (ortholog); INVOLVED IN alanine transport (ortholog); amino acid import across plasma membrane (ortholog); cellular response to amino acid stimulus (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); allergic contact dermatitis (ortholog); autism spectrum disorder (ortholog); FOUND IN amino acid transport complex (ortholog); apical plasma membrane (ortholog); basal plasma membrane (ortholog) NW_004955541 2103437 2129668 - 102024849 AGCD01071400;GBBH01118047;GBDF01126154;XM_013508008 XP_013363462 MODEL 8758313 protein-coding Prkcb protein kinase C beta ENCODES a protein that exhibits calcium channel regulator activity (ortholog); calcium,diacylglycerol-dependent serine/threonine kinase activity (ortholog); chromatin binding (ortholog); INVOLVED IN B cell activation (ortholog); B cell receptor signaling pathway (ortholog); calcium ion transport (ortholog); PARTICIPATES IN insulin signaling pathway; interleukin-2 signaling pathway; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); Alzheimer's disease (ortholog); autistic disorder (ortholog); FOUND IN brush border membrane (ortholog); calyx of Held (ortholog); centrosome (ortholog) NW_004955493 2395494 2710522 + 102015323 AGCD01060951;AGCD01060952;AGCD01060953;AGCD01060954;AGCD01060955;AGCD01060956;AGCD01060957;AGCD01060958;AGCD01060959;AGCD01060960;AGCD01060961;GBDI01025873;XM_005405341 XP_005405398 MODEL 8977057 pseudo LOC102017808 DEP domain-containing protein 1B-like NW_004955434 20258595 20259982 - 102017808 AGCD01032614 MODEL 9066213 ncrna LOC102010532 uncharacterized LOC102010532 NW_004955447 16858642 16860472 - 102010532 AGCD01041110;GBDF01286927;XR_001235700 MODEL 8953086 ncrna LOC102023591 uncharacterized LOC102023591 NW_004955479 8676663 8679973 + 102023591 AGCD01056451;GBDF01304727;XR_263737 MODEL 8932056 ncrna LOC102019350 uncharacterized LOC102019350 NW_004955452 1066239 1067076 + 102019350 AGCD01043830;GBDF01124799;XR_262632 MODEL 8942620 protein-coding Rgs18 regulator of G protein signaling 18 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); regulation of G protein-coupled receptor signaling pathway (ortholog); FOUND IN cytoplasm (ortholog) NW_004955406 29573127 29594991 + 102016232 AGCD01006335;GBDK01432974;XM_005375096 XP_005375153 MODEL 8881084 pseudo LOC102003873 40S ribosomal protein S18 pseudogene NW_004955418 24453774 24454252 - 102003873 AGCD01019333 MODEL 9017971 protein-coding Ppp1r14c protein phosphatase 1 regulatory inhibitor subunit 14C ENCODES a protein that exhibits protein serine/threonine phosphatase inhibitor activity (ortholog); ASSOCIATED WITH Coronavirus infectious disease (ortholog); FOUND IN membrane (ortholog) NW_004955439 11142520 11238660 - 102005843 AGCD01035892;AGCD01035893;GBDI01117555;XM_005390591;XM_013517322;XM_013517323;XR_001235188;XR_001235189;XR_001235190;XR_001235191;XR_001235192;XR_001235193;XR_261978;XR_261979 XP_005390648;XP_013372776;XP_013372777 MODEL 8839928 pseudo LOC102011280 probable methyltransferase-like protein 15 NW_004955457 7384810 7385987 - 102011280 AGCD01046877 MODEL 8699537 protein-coding Entrep1 endosomal transmembrane epsin interactor 1 ENCODES a protein that exhibits ubiquitin ligase activator activity (ortholog); INVOLVED IN CXCL12-activated CXCR4 signaling pathway (ortholog); negative adaptation of signaling pathway (ortholog); receptor internalization (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN early endosome membrane (ortholog); late endosome membrane (ortholog); plasma membrane (ortholog) NW_004955434 3615284 3704014 - 102004633 AGCD01032137;AGCD01032138;AGCD01032139;AGCD01032140;AGCD01032141;GBBH01142742;GBCB01007711;XM_005388562 XP_005388619 MODEL 8792252 protein-coding Rnaseh2b ribonuclease H2 subunit B INVOLVED IN in utero embryonic development (ortholog); negative regulation of gene expression (ortholog); positive regulation of fibroblast proliferation (ortholog); ASSOCIATED WITH Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 1 (ortholog); Aicardi-Goutieres Syndrome 2 (ortholog); FOUND IN nucleoplasm (ortholog); ribonuclease H2 complex (ortholog) NW_004955431 4291687 4368169 + 102029546 AGCD01029993;AGCD01029994;AGCD01029995;AGCD01029996;GBDF01160649;XM_013515851;XM_013515852;XM_013515853;XM_013515854;XM_013515855;XM_013515856;XM_013515857 XP_013371305;XP_013371306;XP_013371307;XP_013371308;XP_013371309;XP_013371310;XP_013371311 MODEL 8708006 protein-coding LOC102018938 olfactory receptor 7D4-like NW_004955495 581689 582633 + 102018938 AGCD01061640;XM_005405557 XP_005405614 MODEL 8817664 pseudo LOC102029106 uncharacterized LOC102029106 NW_004955519 86964 91981 - 102029106 AGCD01067854 MODEL 8885766 protein-coding Wdr88 WD repeat domain 88 NW_004955468 551574 563630 + 102015187 AGCD01051712;GBDF01088193;XM_013522282 XP_013377736 MODEL 9010106 protein-coding Timp2 TIMP metallopeptidase inhibitor 2 ENCODES a protein that exhibits enzyme activator activity (ortholog); integrin binding (ortholog); metalloendopeptidase inhibitor activity (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); negative regulation of metallopeptidase activity (ortholog); negative regulation of mitotic cell cycle (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); Alzheimer's disease (ortholog); Brain Injuries (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); extracellular region (ortholog) NW_004955506 3769113 3812896 + 102029096 AGCD01065319;GBCE01002810;XM_005407364 XP_005407421 MODEL 9031964 protein-coding Sac3d1 SAC3 domain containing 1 INVOLVED IN centrosome duplication (ortholog); negative regulation of receptor signaling pathway via JAK-STAT (ortholog); regulation of immune response (ortholog); ASSOCIATED WITH melanoma (ortholog); FOUND IN centrosome (ortholog); microtubule cytoskeleton (ortholog); nucleus (ortholog) NW_004955422 20146359 20149152 - 102021361 AGCD01023067;AGCD01023068;GBBH01082267;GBCE01123690;XM_013514235 XP_013369689 MODEL 8950542 protein-coding LOC102028726 testis-specific Y-encoded protein 3-like NW_004955461 1759261 1770913 + 102028726 AGCD01048822;XM_005398068 XP_005398125 MODEL 39133467 snrna U4 U4 spliceosomal RNA 9038005 protein-coding Pdzrn4 PDZ domain containing ring finger 4 ASSOCIATED WITH silicosis (ortholog) NW_004955500 638027 1007585 + 102029643 AGCD01063640;AGCD01063641;GBCE01168746;XM_005406572;XM_013505727 XP_005406629;XP_013361181 MODEL 8821874 protein-coding Prss58 serine protease 58 NW_004955494 1277333 1283610 + 102011880 AGCD01061393;GBDF01008495;XM_005405396 XP_005405453 MODEL 8750762 protein-coding Rbp1 retinol binding protein 1 ENCODES a protein that exhibits all-trans-retinol binding (ortholog); retinol binding (ortholog); INVOLVED IN lipid homeostasis (ortholog); lipid storage (ortholog); regulation of granulocyte differentiation (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); basal cell carcinoma (ortholog); carcinoma (ortholog); FOUND IN cell body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955508 6046738 6072202 + 102024936 AGCD01065912;GBDJ01081692;XM_005407782;XM_013506285 XP_005407839;XP_013361739 MODEL 9000566 protein-coding Ptms parathymosin ENCODES a protein that exhibits zinc ion binding (ortholog) NW_004955413 4376955 4378253 + 102029065 AGCD01013612;GBCQ01007684;GBDJ01018919;XM_013511349 XP_013366803 MODEL 8782842 ncrna LOC102011744 uncharacterized LOC102011744 NW_004955459 4423019 4424874 - 102011744 AGCD01048026;GBDF01144191;XR_263015 MODEL 8833960 pseudo LOC102017809 LIM/homeobox protein Lhx2 pseudogene NW_004955529 937279 938433 + 102017809 AGCD01069660 MODEL 39132582 snorna SNORA70 Small nucleolar RNA SNORA70 8881808 ncrna LOC102005660 uncharacterized LOC102005660 NW_004955404 45053525 45082173 - 102005660 AGCD01004437;XR_001234995;XR_259339 MODEL 8984425 pseudo LOC102007117 pre-mRNA-splicing factor 38A pseudogene NW_004955476 3480571 3481491 - 102007117 AGCD01055252 MODEL 8757824 protein-coding Rab15 RAB15, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); INVOLVED IN positive regulation of regulated secretory pathway (ortholog); receptor-mediated endocytosis (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); endosome membrane (ortholog) NW_004955466 4958414 4981464 + 102025224 AGCD01050864;GBBH01091286;XM_005399114;XR_001236781 XP_005399171 MODEL 9036501 protein-coding Sema3a semaphorin 3A ENCODES a protein that exhibits chemorepellent activity (ortholog); neuropilin binding (ortholog); semaphorin receptor binding (ortholog); INVOLVED IN axon extension involved in axon guidance (ortholog); axon guidance (ortholog); axonal fasciculation (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Delayed Puberty (ortholog); FOUND IN axon (ortholog); cerebellar climbing fiber to Purkinje cell synapse (ortholog); dendrite (ortholog) NW_004955410 2146088 2344342 + 102029719 AGCD01010629;GBDJ01165559;GBDK01233873;XM_005377190 XP_005377247 MODEL 8720045 protein-coding Slc22a4 solute carrier family 22 member 4 ENCODES a protein that exhibits acetylcholine transmembrane transporter activity (ortholog); amino acid transmembrane transporter activity (ortholog); amino-acid betaine transmembrane transporter activity (ortholog); INVOLVED IN acetylcholine uptake (ortholog); amino acid import across plasma membrane (ortholog); carnitine metabolic process (ortholog); PARTICIPATES IN cisplatin response pathway; ASSOCIATED WITH chronic obstructive pulmonary disease (ortholog); Coxsackievirus Infections (ortholog); Enterovirus Infections (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); mitochondrial membrane (ortholog) NW_004955408 3671772 3737946 + 102014984 AGCD01008071;AGCD01008072;AGCD01008073;GBDI01289956;XM_013508300 XP_013363754 MODEL 8833038 protein-coding LOC102012901 general transcription factor 3C polypeptide 6-like NW_004955441 6322077 6323436 - 102012901 AGCD01036912;XM_013517515 XP_013372969 MODEL 9029157 ncrna LOC102026396 uncharacterized LOC102026396 NW_004955457 3751342 3783101 - 102026396 AGCD01046779;GBCB01060283;XR_262923;XR_262924 MODEL 10085183 ncrna LOC106147152 uncharacterized LOC106147152 NW_004955523 1550074 1561204 + 106147152 AGCD01068525;GBCE01156577;XR_001231921 MODEL 8818388 protein-coding LOC102024584 NUT family member 2G NW_004955422 23875419 23883131 + 102024584 AGCD01023210;GBDF01010838;XM_013513990;XM_013513991 XP_013369444;XP_013369445 MODEL 8888627 ncrna LOC102009749 uncharacterized LOC102009749 NW_004955519 2189856 2320813 - 102009749 AGCD01067917;AGCD01067918;AGCD01067919;AGCD01067920;AGCD01067921;AGCD01067922;AGCD01067923;AGCD01067924;GBDK01382059;XR_001231859;XR_001231860;XR_001231861 MODEL 9066730 protein-coding LOC102021873 olfactory receptor 52M1-like NW_004955414 20140566 20141519 - 102021873 AGCD01015358;XM_005380465 XP_005380522 MODEL 8917553 pseudo LOC102015906 general transcription factor IIF subunit 2 pseudogene NW_004955402 44325761 44326706 + 102015906 AGCD01001109;XM_005373007 MODEL 8724356 protein-coding LOC102026023 female-specific lacrimal gland protein-like NW_004955499 3047393 3051411 + 102026023 AGCD01063451;XM_005406560 XP_005406617 MODEL 8881196 protein-coding Slc7a6 solute carrier family 7 member 6 ENCODES a protein that exhibits arginine binding (ortholog); basic amino acid transmembrane transporter activity (ortholog); L-arginine transmembrane transporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); glycine betaine transport (ortholog); L-arginine transmembrane transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; FOUND IN plasma membrane (ortholog); transmembrane transporter complex (ortholog) NW_004955484 8335508 8383814 - 102009185 AGCD01058376;AGCD01058377;XM_005403582;XM_013503921;XM_013503922;XM_013503923;XM_013503924;XM_013503925;XM_013503926;XM_013503927;XM_013503928 XP_005403639;XP_013359375;XP_013359376;XP_013359377;XP_013359378;XP_013359379;XP_013359380;XP_013359381;XP_013359382 MODEL 10220352 ncrna LOC106148248 uncharacterized LOC106148248 NW_004955418 28740677 28753943 - 106148248 AGCD01019444;GBDF01040305;XR_001233521 MODEL 40834593 protein-coding C11orf80 chromosome 11 open reading frame 80 8876856 protein-coding Sft2d1 SFT2 domain containing 1 NW_004955439 15555080 15575698 + 102027115 AGCD01036004;GBBH01064219;XM_005390657 XP_005390714 MODEL 8745048 ncrna LOC102017810 uncharacterized LOC102017810 NW_004955436 21304021 21311466 + 102017810 AGCD01034051;GBBH01051674;XR_261805 MODEL 8786245 protein-coding Smoc2 SPARC related modular calcium binding 2 ENCODES a protein that exhibits calcium ion binding (ortholog); glycosaminoglycan binding (ortholog); heparin binding (ortholog); INVOLVED IN extracellular matrix organization (ortholog); positive regulation of angiogenesis (ortholog); positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH Dentin Dysplasia, Type 1 (ortholog); Experimental Liver Cirrhosis (ortholog); schizophrenia (ortholog); FOUND IN basement membrane (ortholog); cell periphery (ortholog); extracellular matrix (ortholog) NW_004955411 4729753 4822140 - 102010981 AGCD01011588;GBCE01004050;XM_005377922 XP_005377979 MODEL 8719038 pseudo LOC102030522 nuclear receptor-binding factor 2 pseudogene NW_004955473 11156099 11161630 - 102030522 AGCD01054130;AGCD01054131 MODEL 8704333 ncrna LOC102011284 uncharacterized LOC102011284 NW_004955460 12592756 12593305 - 102011284 AGCD01048661;GBDF01041740;XR_263061 MODEL 8869807 protein-coding Ranbp17 RAN binding protein 17 ASSOCIATED WITH autism spectrum disorder (ortholog); congenital hydrocephalus (ortholog) NW_004955408 23777501 24092993 + 102019032 AGCD01008590;AGCD01008591;AGCD01008592;AGCD01008593;AGCD01008594;GBDF01045449;XM_005376323;XM_005376324;XM_005376325;XM_005376326 XP_005376380;XP_005376381;XP_005376382;XP_005376383 MODEL 9026854 protein-coding LOC102011750 interstitial collagenase NW_004955412 5994105 6001239 - 102011750 AGCD01012662;XM_005378615 XP_005378672 MODEL 8719140 pseudo LOC102007118 casein kinase I isoform alpha pseudogene NW_004955416 10129649 10130798 + 102007118 AGCD01017109 MODEL 9037460 protein-coding Pcid2 PCI domain containing 2 INVOLVED IN negative regulation of gene expression, epigenetic (ortholog); negative regulation of lymphoid progenitor cell differentiation (ortholog); poly(A)+ mRNA export from nucleus (ortholog); FOUND IN cytoplasm (ortholog); nuclear pore nuclear basket (ortholog); nucleoplasm (ortholog) NW_004955404 618092 639424 + 102006533 AGCD01003205;GBDF01051467;GBDF01051471;XM_005373953 XP_005374010 MODEL 8971942 protein-coding Entrep2 endosomal transmembrane epsin interactor 2 NW_004955416 29103925 29389149 + 102020337 AGCD01017645;AGCD01017646;AGCD01017647;AGCD01017648;AGCD01017649;AGCD01017650;AGCD01017651;AGCD01017652;AGCD01017653;AGCD01017654;AGCD01017655;GBDF01273920;XM_013512428 XP_013367882 MODEL 8947950 protein-coding LOC102029107 CSC1-like protein 1 NW_004955520 10175 39771 + 102029107 AGCD01067996;AGCD01067997;AGCD01067998;AGCD01067999;AGCD01068000;GBDF01086336;GBDI01071125;XM_013507051 XP_013362505 MODEL 8974532 protein-coding Plgrkt plasminogen receptor with a C-terminal lysine INVOLVED IN positive regulation of plasminogen activation (ortholog); FOUND IN mitochondrion (ortholog); plasma membrane (ortholog) NW_004955434 9424793 9468055 - 102030660 AGCD01032301;AGCD01032302;AGCD01032303;GBDJ01355387;XM_005388659 XP_005388716 MODEL 9011666 pseudo LOC102006747 spermatid perinuclear RNA-binding protein-like NW_004955459 3238938 3257604 - 102006747 AGCD01048011;AGCD01048012 MODEL 8887793 protein-coding Timp3 TIMP metallopeptidase inhibitor 3 INVOLVED IN cellular response to hypoxia (ortholog); cellular response to interleukin-6 (ortholog); cellular response to peptide (ortholog); PARTICIPATES IN angiotensin II signaling pathway via AT2 receptor; ASSOCIATED WITH asthma (ortholog); bladder disease (ortholog); breast cancer (ortholog); FOUND IN basement membrane (ortholog) NW_004955405 41613976 41655813 + 102003311 AGCD01005557;GBCE01004412;XM_005374652 XP_005374709 MODEL 8711925 pseudo LOC102010533 olfactory receptor 2B6-like NW_004955576 1225109 1226068 - 102010533 AGCD01075364;XM_005413950 MODEL 8709129 protein-coding Wdr89 WD repeat domain 89 INVOLVED IN corpus callosum development (ortholog); ventricular system development (ortholog) NW_004955466 6171553 6204818 + 102007319 AGCD01050912;AGCD01050913;AGCD01050914;GBDF01276584;XM_005399148;XM_005399149;XM_005399150;XM_005399151;XM_013522006;XM_013522007 XP_005399205;XP_005399206;XP_005399207;XP_005399208;XP_013377460;XP_013377461 MODEL 9033515 protein-coding Prkcd protein kinase C delta ENCODES a protein that exhibits calcium,diacylglycerol-dependent serine/threonine kinase activity (ortholog); diacylglycerol-dependent, calcium-independent serine/threonine kinase activity (ortholog); enzyme activator activity (ortholog); INVOLVED IN apoptotic process (ortholog); B cell proliferation (ortholog); cell chemotaxis (ortholog); PARTICIPATES IN ceramide signaling pathway; eicosanoid signaling pathway; endothelin signaling pathway; ASSOCIATED WITH autoimmune lymphoproliferative syndrome type 3 (ortholog); brain ischemia (ortholog); Burns (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955430 3125066 3151857 + 102029544 AGCD01029192;AGCD01029193;GBDI01068073;XM_005387365;XM_013515681;XM_013515682 XP_005387422;XP_013371135;XP_013371136 MODEL 8896000 protein-coding Lman2 lectin, mannose binding 2 ENCODES a protein that exhibits carbohydrate binding (ortholog); D-mannose binding (ortholog); heat shock protein binding (ortholog); INVOLVED IN positive regulation of phagocytosis (ortholog); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ortholog); FOUND IN cell surface (ortholog); COPI-coated vesicle (ortholog); cytoplasmic vesicle (ortholog) NW_004955408 29581737 29597240 - 102023778 AGCD01008764;AGCD01008765;GBDI01019724;XM_005376426 XP_005376483 MODEL 8935476 pseudo LOC102023592 zinc finger CCCH domain-containing protein 15 pseudogene NW_004955479 9466239 9467106 + 102023592 AGCD01056471 MODEL 9045102 protein-coding Sorbs1 sorbin and SH3 domain containing 1 ENCODES a protein that exhibits insulin receptor binding (ortholog); protein kinase binding (ortholog); signaling receptor complex adaptor activity (ortholog); INVOLVED IN acetylcholine receptor signaling pathway (ortholog); cellular response to insulin stimulus (ortholog); focal adhesion assembly (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin signaling pathway; Rho/Rac/Cdc42 mediated signaling pathway; ASSOCIATED WITH Insulin Resistance (ortholog); obesity (ortholog); prostate cancer (ortholog); FOUND IN adherens junction (ortholog); cell-substrate junction (ortholog); cytoskeleton (ortholog) NW_004955507 1622567 1849047 - 102007575 AGCD01065569;AGCD01065570;AGCD01065571;AGCD01065572;AGCD01065573;GBCE01159755;XM_013506166;XM_013506167;XM_013506168;XM_013506169;XM_013506170;XM_013506171;XM_013506173;XM_013506174;XM_013506175;XM_013506176;XM_013506177;XM_013506178;XM_013506179;XM_013506180;XM_013506181;XM_013506182;XM_013506183;XM_013506184;XM_013506185;XM_013506186;XM_013506187;XM_013506188;XM_013506189 XP_013361620;XP_013361621;XP_013361622;XP_013361623;XP_013361624;XP_013361625;XP_013361627;XP_013361628;XP_013361629;XP_013361630;XP_013361631;XP_013361632;XP_013361633;XP_013361634;XP_013361635;XP_013361636;XP_013361637;XP_013361638;XP_013361639;XP_013361640;XP_013361641;XP_013361642;XP_013361643 MODEL 8941323 pseudo LOC102028069 60S ribosomal protein L31 pseudogene NW_004955467 191407 191925 - 102028069 AGCD01051211 MODEL 8798789 ncrna LOC102019352 uncharacterized LOC102019352 NW_004955405 18424487 18429122 - 102019352 AGCD01005017;GBDJ01223618;XR_259387 MODEL 9027625 ncrna LOC102003874 uncharacterized LOC102003874 NW_004955482 8396477 8398258 + 102003874 AGCD01057519;GBDF01127761;XR_263850 MODEL 10296320 ncrna LOC106149989 uncharacterized LOC106149989 NW_004955460 8061251 8065462 - 106149989 AGCD01048512;GBCB01056225;XR_001236500;XR_001236501 MODEL 8704332 pseudo LOC102009750 H-2 class II histocompatibility antigen, E-S beta chain pseudogene NW_004955433 10616032 10617329 + 102009750 AGCD01031633 MODEL 8861832 protein-coding Rgs19 regulator of G protein signaling 19 ENCODES a protein that exhibits actin binding (ortholog); G-protein alpha-subunit binding (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); chemical synaptic transmission (ortholog); endothelial cell migration (ortholog); FOUND IN brush border (ortholog); cell junction (ortholog); clathrin-coated vesicle (ortholog) NW_004955528 183067 185703 + 102022632 AGCD01069514;GBCE01116836;GBDJ01317429;XM_013507518 XP_013362972 MODEL 8790384 protein-coding LOC102005661 hematopoietic prostaglandin D synthase-like NW_004955405 437618 453991 + 102005661 AGCD01004560;GBDK01126143;XM_005374245;XR_001235167;XR_001235168;XR_259351 XP_005374302 MODEL 8978269 protein-coding Trabd2b TraB domain containing 2B ENCODES a protein that exhibits metalloendopeptidase activity (ortholog); Wnt-protein binding (ortholog); INVOLVED IN negative regulation of Wnt signaling pathway (ortholog); positive regulation of protein-containing complex assembly (ortholog); proteolysis (ortholog); FOUND IN plasma membrane (ortholog); plasma membrane raft (ortholog) NW_004955464 10612515 10817725 + 102007093 AGCD01050127;GBCE01168317;XM_005398637 XP_005398694 MODEL 8881027 protein-coding LOC102010898 creatine kinase U-type, mitochondrial NW_004955416 10117075 10122968 + 102010898 AGCD01017108;AGCD01017109;GBDJ01024945;XM_013512557;XM_013512558 XP_013368011;XP_013368012 MODEL 8896992 protein-coding Rab17 RAB17, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTPase activity (ortholog); INVOLVED IN anterograde dendritic transport (ortholog); cilium assembly (ortholog); endocytic recycling (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); dendrite (ortholog) NW_004955542 2751953 2759661 + 102016749 AGCD01071536;AGCD01071537;XM_005411250 XP_005411307 MODEL 8770813 protein-coding Rnaseh2c ribonuclease H2 subunit C INVOLVED IN RNA catabolic process (ortholog); ASSOCIATED WITH Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 3 (ortholog); genetic disease (ortholog); FOUND IN ribonuclease H2 complex (ortholog) NW_004955422 19556129 19557416 + 102029302 AGCD01023019;GBDF01051514;XM_005384463 XP_005384520 MODEL 9001065 pseudo LOC102018940 SNW domain-containing protein 1 pseudogene NW_004955423 812801 813554 + 102018940 AGCD01023421 MODEL 8710803 protein-coding Sack1a scaffolding CK1 anchoring protein A ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol 3-kinase regulatory subunit binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cell population proliferation (ortholog); epidermal growth factor receptor signaling pathway (ortholog); positive regulation of adipose tissue development (ortholog); ASSOCIATED WITH Disease Progression (ortholog); Neoplasm Invasiveness (ortholog); Ovarian Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog) NW_004955540 2070396 2095341 + 102028131 AGCD01071312;GBDK01170278;XM_005410920;XM_005410921 XP_005410977;XP_005410978 MODEL 39133468 snrna U4 U4 spliceosomal RNA 8709027 protein-coding Smox spermine oxidase ENCODES a protein that exhibits polyamine oxidase activity (ortholog); spermine oxidase activity (ortholog); INVOLVED IN polyamine catabolic process (ortholog); spermine catabolic process (ortholog); PARTICIPATES IN polyamine metabolic pathway; ASSOCIATED WITH middle cerebral artery infarction (ortholog); stroke (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear membrane (ortholog) NW_004955415 14937438 14971874 + 102005704 AGCD01016319;AGCD01016320;GBDF01089694;XM_005380812;XM_005380813;XM_005380814;XM_005380815;XM_005380816;XM_013512389;XM_013512390 XP_005380869;XP_005380870;XP_005380871;XP_005380872;XP_005380873;XP_013367843;XP_013367844 MODEL 8762532 ncrna LOC102029109 uncharacterized LOC102029109 NW_004955435 3748169 3750350 + 102029109 AGCD01032803;GBDF01261174;XR_261659 MODEL 8889416 protein-coding Rbp2 retinol binding protein 2 ENCODES a protein that exhibits binding (ortholog); lipid binding (ortholog); molecular carrier activity (ortholog); INVOLVED IN retinoid metabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; FOUND IN cytosol (ortholog); synaptic ribbon (ortholog) NW_004955508 6111558 6135929 + 102025271 AGCD01065913;GBCQ01107672;XM_005407783 XP_005407840 MODEL 39132591 snorna SNORA70 Small nucleolar RNA SNORA70 8724632 protein-coding LOC102008614 cytochrome c oxidase subunit 7A1, mitochondrial ENCODES a protein that exhibits cytochrome-c oxidase activity (ortholog); INVOLVED IN oxidative phosphorylation (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN mitochondrion (ortholog); respiratory chain complex IV (ortholog) NW_004955468 2442819 2445169 + 102008614 AGCD01051817;GBCQ01010676;XM_005399919 XP_005399976 MODEL 10200077 protein-coding Prss8 serine protease 8 ENCODES a protein that exhibits sodium channel regulator activity (ortholog); INVOLVED IN positive regulation of sodium ion transmembrane transport (ortholog); positive regulation of sodium ion transport (ortholog); response to mineralocorticoid (ortholog); ASSOCIATED WITH alopecia (ortholog); autosomal recessive congenital ichthyosis 4B (ortholog); breast carcinoma (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular region (ortholog); membrane raft (ortholog) NW_004955493 7970929 7976885 - 106146726 AGCD01061245;GBCE01136676;XM_013504883 XP_013360337 MODEL 8709587 pseudo LOC102026025 elongation factor 1-alpha 1 pseudogene NW_004955425 22371390 22372772 + 102026025 AGCD01025819 MODEL 8726626 protein-coding Ptn pleiotrophin ENCODES a protein that exhibits carbohydrate binding (ortholog); chondroitin sulfate binding (ortholog); chondroitin sulfate proteoglycan binding (ortholog); INVOLVED IN bone mineralization (ortholog); cellular response to D-galactosamine (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH adrenal carcinoma (ortholog); Animal Mammary Neoplasms (ortholog); Body Weight (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); endoplasmic reticulum (ortholog) NW_004955494 5580264 5681848 + 102006927 AGCD01061522;AGCD01061523;GBCE01001843;XM_013505031;XM_013505032 XP_013360485;XP_013360486 MODEL 8792843 protein-coding Ppp1r14d protein phosphatase 1 regulatory inhibitor subunit 14D ENCODES a protein that exhibits protein serine/threonine phosphatase inhibitor activity (ortholog) NW_004955416 7681138 7693644 - 102028187 AGCD01017001;AGCD01017002;AGCD01017003;GBDI01254082;XM_005381265;XM_013512622 XP_005381322;XP_013368076 MODEL 8738239 protein-coding LOC102027385 5-hydroxytryptamine receptor 5B NW_004955459 11750521 11777918 - 102027385 AGCD01048235;AGCD01048236;AGCD01048237;XM_005397692 XP_005397749 MODEL 8791067 protein-coding Slc7a6os solute carrier family 7 member 6 opposite strand INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH Progressive Myoclonus Epilepsy 12 (ortholog) NW_004955484 8340059 8348776 + 102009505 AGCD01058376;GBDF01221281;XM_005403583 XP_005403640 MODEL 10351448 pseudo LOC106149990 cytokine receptor common subunit gamma pseudogene NW_004955460 13238976 13239916 + 106149990 AGCD01048676 MODEL 8825188 ncrna LOC102028727 uncharacterized LOC102028727 NW_004955410 28185233 28195867 + 102028727 AGCD01011245;GBDF01123676;XR_001232703;XR_259875 MODEL 8985172 protein-coding LOC102030526 uncharacterized LOC102030526 NW_004955478 10745711 10761212 - 102030526 AGCD01056147;AGCD01056148;XM_005402301 XP_005402358 MODEL 9007281 protein-coding Sft2d2 SFT2 domain containing 2 NW_004955462 8878387 8897523 - 102018369 AGCD01049329;AGCD01049330;AGCD01049331;GBDK01080878;XM_005398208 XP_005398265 MODEL 8825146 ncrna LOC102026399 uncharacterized LOC102026399 NW_004955458 1221239 1225531 - 102026399 AGCD01047172;GBDJ01345816;XR_262959 MODEL 8968915 protein-coding Pea15 proliferation and apoptosis adaptor protein 15 INVOLVED IN negative regulation of D-glucose import across plasma membrane (ortholog); negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog) NW_004955468 11981956 11991427 + 102015498 AGCD01052140;GBCE01004193;XM_005400198;XM_013522420 XP_005400255;XP_013377874 MODEL 8707225 pseudo LOC102012902 E3 ubiquitin-protein ligase RNF13-like NW_004955550 44557 45787 + 102012902 AGCD01072481 MODEL 8988367 pseudo LOC102011759 coiled-coil domain-containing protein 117 pseudogene NW_004955414 22445100 22446162 - 102011759 AGCD01015456 MODEL 8832926 protein-coding LOC102010535 protein FAM47A-like NW_004955587 258217 259881 - 102010535 AGCD01076061;GBDF01017135;XM_005414446 XP_005414503 MODEL 8892792 pseudo LOC102021874 transmembrane protein 50A pseudogene NW_004955415 9946775 9947256 - 102021874 AGCD01016117;XM_005380691 MODEL 8790185 protein-coding Entrep3 endosomal transmembrane epsin interactor 3 ENCODES a protein that exhibits WW domain binding (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955545 1703860 1710120 - 102023398 AGCD01071868;AGCD01071869;GBBH01067051;GBDK01395802;XM_013508339;XM_013508340 XP_013363793;XP_013363794 MODEL 8910985 protein-coding Plin1 perilipin 1 ENCODES a protein that exhibits protein sequestering activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN cellular response to cold (ortholog); lipid catabolic process (ortholog); negative regulation of lipid catabolic process (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); familial partial lipodystrophy (ortholog); familial partial lipodystrophy type 4 (ortholog); FOUND IN cell periphery (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955416 15538309 15549275 + 102026001 AGCD01017335;GBDI01016533;XM_013512551;XM_013512552 XP_013368005;XP_013368006 MODEL 8895838 protein-coding Lman2l lectin, mannose binding 2 like INVOLVED IN protein transport (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 69 (ortholog); autosomal recessive intellectual developmental disorder 52 (ortholog); bipolar disorder (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955470 4080723 4100662 - 102019161 AGCD01052717;AGCD01052718;GBDF01157284;XM_005400667;XM_005400668 XP_005400724;XP_005400725 MODEL 8901407 protein-coding Prkce protein kinase C epsilon ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); actin monomer binding (ortholog); calcium,diacylglycerol-dependent serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to ethanol (ortholog); cellular response to hypoxia (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; interleukin-2 signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); cardiomyopathy (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cell periphery (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955441 12642703 13142396 + 102010309 AGCD01037132;AGCD01037133;AGCD01037134;AGCD01037135;AGCD01037136;AGCD01037137;AGCD01037138;AGCD01037139;AGCD01037140;AGCD01037141;AGCD01037142;GBDI01034881;XM_005390971;XM_013517553;XM_013517554 XP_005391028;XP_013373007;XP_013373008 MODEL 39131578 protein-coding C11orf96 chromosome 11 open reading frame 96 8719493 pseudo LOC102019354 ankyrin repeat family A protein 2 pseudogene NW_004955452 7466022 7466911 - 102019354 AGCD01044161 MODEL 8803699 pseudo LOC102017817 ubiquitin-like protein 7 pseudogene NW_004955442 13459192 13461151 + 102017817 AGCD01037774 MODEL 8755527 pseudo LOC102009751 pre-mRNA-splicing factor RBM22 pseudogene NW_004955434 8957904 8962702 + 102009751 AGCD01032281;AGCD01032282 MODEL 39132601 snorna SNORA70 Small nucleolar RNA SNORA70 10128912 ncrna LOC106147153 uncharacterized LOC106147153 NW_004955523 1589987 1603096 + 106147153 AGCD01068529;AGCD01068530;AGCD01068531;GBDJ01304796;XR_001231922 MODEL 8952179 pseudo LOC102010899 dnaJ homolog subfamily B member 6-like NW_004955477 2188830 2190566 + 102010899 AGCD01055518;XR_263678 MODEL 8989701 protein-coding LOC102026028 cytochrome P450 2E1 ENCODES a protein that exhibits 4-nitrophenol 2-monooxygenase activity (ortholog); enzyme binding (ortholog); heme binding (ortholog); INVOLVED IN 4-nitrophenol metabolic process (ortholog); lipid hydroxylation (ortholog); long-chain fatty acid metabolic process (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH acoustic neuroma (ortholog); acute kidney failure (ortholog); acute lymphoblastic leukemia (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog) NW_004955507 6293162 6303255 - 102026028 AGCD01065703;GBDJ01062841;XM_005407704 XP_005407761 MODEL 9061870 protein-coding LOC102024586 olfactory receptor 7E24-like NW_004955495 767666 768702 + 102024586 AGCD01061653;XM_013505093 XP_013360547 MODEL 8986771 ncrna LOC102007121 uncharacterized LOC102007121 NW_004955482 3110012 3117667 + 102007121 AGCD01057259;GBDF01304912;XR_263825 MODEL 8771618 protein-coding Rab18 RAB18, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTPase activity (ortholog); INVOLVED IN endoplasmic reticulum tubular network organization (ortholog); lipid droplet organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); Warburg micro syndrome (ortholog); Warburg micro syndrome 3 (ortholog); FOUND IN cis-Golgi network membrane (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum tubular network (ortholog) NW_004955462 1380158 1411804 + 102025662 AGCD01049116;AGCD01049117;GBDF01088111;GBDF01088112;XM_013521463 XP_013376917 MODEL 9040942 ncrna LOC102006752 uncharacterized LOC102006752 NW_004955410 28863475 28865857 + 102006752 AGCD01011262;GBCB01001006;XR_259878 MODEL 9053275 protein-coding Pcif1 phosphorylated CTD interacting factor 1 ENCODES a protein that exhibits mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity (ortholog); RNA polymerase II C-terminal domain binding (ortholog); RNA polymerase II C-terminal domain phosphoserine binding (ortholog); INVOLVED IN mRNA processing (ortholog); negative regulation of translation (ortholog); positive regulation of translation (ortholog); FOUND IN intercellular bridge (ortholog); microtubule cytoskeleton (ortholog); nucleoplasm (ortholog) NW_004955445 11355227 11368392 - 102024858 AGCD01039687;GBCB01051984;XM_005392398;XM_005392399 XP_005392455;XP_005392456 MODEL 39133469 snrna U4 U4 spliceosomal RNA 9005807 pseudo LOC102023594 thioredoxin-interacting protein pseudogene NW_004955480 6224297 6225462 - 102023594 AGCD01056683;XR_263753 MODEL 8957493 protein-coding Wdr90 WD repeat domain 90 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN centriole elongation (ortholog); cilium assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955442 16534951 16552856 - 102020724 AGCD01037901;GBDF01080193;XM_005391622;XM_013517761;XM_013517762;XR_001235382 XP_005391679;XP_013373215;XP_013373216 MODEL 8973718 ncrna LOC102028074 uncharacterized LOC102028074 NW_004955468 3480736 3491844 - 102028074 AGCD01051860;GBDF01210449;XR_263381 MODEL 8990272 protein-coding Peak1 pseudopodium enriched atypical kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); non-membrane spanning protein tyrosine kinase activity (ortholog); INVOLVED IN cell migration (ortholog); focal adhesion assembly (ortholog); protein autophosphorylation (ortholog); FOUND IN actin cytoskeleton (ortholog); focal adhesion (ortholog) NW_004955450 2000823 2285023 - 102021066 AGCD01042375;AGCD01042376;AGCD01042377;AGCD01042378;AGCD01042379;AGCD01042380;AGCD01042381;GBDK01237637;XM_005393484;XM_005393487;XM_005393488;XM_013518878;XM_013518879;XM_013518880;XM_013518881;XM_013518882 XP_005393541;XP_005393544;XP_005393545;XP_013374332;XP_013374333;XP_013374334;XP_013374335;XP_013374336 MODEL 8742361 protein-coding Rgs2 regulator of G protein signaling 2 ENCODES a protein that exhibits adenylate cyclase inhibitor activity (ortholog); beta-tubulin binding (ortholog); G-protein alpha-subunit binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); maternal process involved in female pregnancy (ortholog); negative regulation of cardiac muscle hypertrophy (ortholog); PARTICIPATES IN acetylcholine signaling pathway via muscarinic acetylcholine receptor; angiotensin II signaling pathway via AT1 receptor; calcium signaling pathway via the calcium-sensing receptor; ASSOCIATED WITH acute myeloid leukemia (ortholog); bladder disease (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog) NW_004955406 30261757 30265389 + 102018685 AGCD01006363;GBBH01140341;XM_005375101 XP_005375158 MODEL 8858971 protein-coding Sema3b semaphorin 3B ASSOCIATED WITH Endometrial Neoplasms (ortholog); neuroblastoma (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955532 2083457 2093327 + 102027567 AGCD01070215;GBDJ01266007;GBDK01001855;XM_013507584;XM_013507585;XM_013507586 XP_013363038;XP_013363039;XP_013363040 MODEL 8911469 protein-coding Plin2 perilipin 2 INVOLVED IN cellular response to glucose starvation (ortholog); lipid droplet disassembly (ortholog); lipid storage (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Hypertriglyceridemia (ortholog); Insulin Resistance (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lipid droplet (ortholog) NW_004955434 21573860 21580990 - 102018432 AGCD01032639;GBCB01119738;GBDJ01082348;XM_013516386 XP_013371840 MODEL 9035215 protein-coding Ranbp2 RAN binding protein 2 ENCODES a protein that exhibits kinase activator activity (ortholog); peptidyl-prolyl cis-trans isomerase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN centrosome localization (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); NLS-bearing protein import into nucleus (ortholog); PARTICIPATES IN CRM1 export pathway; mitochondria transport pathway; ASSOCIATED WITH ectodermal dysplasia (ortholog); ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, 3 (ortholog); genetic disease (ortholog); FOUND IN annulate lamellae (ortholog); cytoplasmic periphery of the nuclear pore complex (ortholog); nuclear envelope (ortholog) NW_004955470 12180426 12247737 + 102009934 AGCD01052922;AGCD01052923;AGCD01052924;AGCD01052925;GBDF01156107;XM_005400808;XM_005400809;XM_005400811 XP_005400865;XP_005400866;XP_005400868 MODEL 10226339 protein-coding Rnasek ribonuclease K ENCODES a protein that exhibits RNA endonuclease activity (ortholog); INVOLVED IN endosomal lumen acidification (ortholog); proton transmembrane transport (ortholog); receptor-mediated endocytosis (ortholog); FOUND IN endomembrane system (ortholog); membrane (ortholog) NW_004955467 9914907 9917051 - 106146252 AGCD01051535;GBDK01000779;XM_005399580 XP_005399637 MODEL 8822131 protein-coding LOC102018942 leukotriene-B4 omega-hydroxylase 3-like NW_004955495 7625004 7636072 - 102018942 AGCD01062154;XM_013505064 XP_013360518 MODEL 8909774 protein-coding LOC102015907 late cornified envelope protein 3A-like NW_004955592 806985 807294 + 102015907 AGCD01076324;XM_013509982 XP_013365436 MODEL 10286414 ncrna LOC106147154 uncharacterized LOC106147154 NW_004955523 1100850 1112300 + 106147154 AGCD01068499;XR_001231923;XR_001231924 MODEL 8918666 ncrna LOC102026403 uncharacterized LOC102026403 NW_004955409 24881030 24917168 - 102026403 AGCD01010095;GBDK01058685;XR_001232660;XR_001232661;XR_001232662;XR_259794 MODEL 8828127 ncrna LOC102010901 uncharacterized LOC102010901 NW_004955416 18447091 18476171 + 102010901 AGCD01017406;GBDF01227734;XR_260392 MODEL 8735588 trna trnA(tgc) tRNA-Ala MT 5014 5083 - 15822221 8740017 pseudo LOC102011763 40S ribosomal protein S24 pseudogene NW_004955478 9920867 9921511 - 102011763 AGCD01056109 MODEL 8700901 protein-coding LOC102003877 chromosome unknown open reading frame, human C16orf47 NW_004955484 5772487 5791070 - 102003877 AGCD01058271;XM_005415398 XP_005415455 MODEL 8825582 protein-coding Prtfdc1 phosphoribosyl transferase domain containing 1 ENCODES a protein that exhibits hypoxanthine phosphoribosyltransferase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN GMP catabolic process (ortholog); guanine salvage (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Mouth Neoplasms (ortholog); Ovarian Neoplasms (ortholog) NW_004955429 4234806 4325896 + 102007140 AGCD01028484;AGCD01028485;AGCD01028486;AGCD01028487;GBCQ01013640;XM_005386898 XP_005386955 MODEL 9061556 protein-coding Rbp3 retinol binding protein 3 ENCODES a protein that exhibits retinol binding (ortholog); PARTICIPATES IN altered retinoid cycle metabolic pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH autoimmune disease (ortholog); cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); FOUND IN cone matrix sheath (ortholog); extracellular region (ortholog); interphotoreceptor matrix (ortholog) NW_004955556 2217528 2225369 + 102014296 AF297280;AGCD01073208;AJ427246;GBDF01290208;XM_005412613 AAK62259;CAD20284;XP_005412670 MODEL 8952678 protein-coding LOC102008615 zinc finger protein 792 NW_004955468 4295637 4302563 - 102008615 AGCD01051905;GBCQ01021284;XM_013522370;XM_013522371;XM_013522372;XM_013522373 XP_013377824;XP_013377825;XP_013377826;XP_013377827 MODEL 8852155 pseudo LOC102027387 nucleobindin-2 pseudogene NW_004955461 70544 71768 + 102027387 AGCD01048790 MODEL 8901801 protein-coding Lmbr1 limb development membrane protein 1 INVOLVED IN embryonic digit morphogenesis (ortholog); ASSOCIATED WITH acheiropody (ortholog); genetic disease (ortholog); hypoplastic or aplastic tibia with polydactyly (ortholog) NW_004955491 9171462 9217996 - 102007669 AGCD01060625;GBDF01053045;GBDJ01006296;XM_005404906 XP_005404963 MODEL 9025630 protein-coding Slc22a6 solute carrier family 22 member 6 ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); antiporter activity (ortholog); prostaglandin transmembrane transporter activity (ortholog); INVOLVED IN alpha-ketoglutarate transport (ortholog); metanephric proximal tubule development (ortholog); monoatomic anion transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH calcinosis (ortholog); FOUND IN basal plasma membrane (ortholog); basolateral plasma membrane (ortholog); caveola (ortholog) NW_004955599 302026 307503 + 102003713 AGCD01076637;GBCQ01008752;XM_005414753;XM_013510035 XP_005414810;XP_013365489 MODEL 39131365 protein-coding C13orf42 chromosome 13 open reading frame 42 8743062 pseudo LOC102017822 60S acidic ribosomal protein P0 pseudogene NW_004955563 1331294 1333153 - 102017822 AGCD01074141 MODEL 8857853 protein-coding Prkcg protein kinase C gamma ENCODES a protein that exhibits calcium,diacylglycerol-dependent serine/threonine kinase activity (ortholog); protein kinase activity (ortholog); protein serine/threonine/tyrosine kinase activity (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); chemosensory behavior (ortholog); innervation (ortholog); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; insulin signaling pathway; ASSOCIATED WITH Animal Disease Models (ortholog); autosomal dominant cerebellar ataxia (ortholog); autosomal recessive spinocerebellar ataxia 14 (ortholog); FOUND IN calyx of Held (ortholog); cell-cell junction (ortholog); cytoplasm (ortholog) NW_004955604 262182 279259 - 102018143 AGCD01076875;GBBH01155679;XM_005414871 XP_005414928 MODEL 8950551 pseudo LOC102030531 centrosomal protein of 57 kDa pseudogene NW_004955419 28838656 28840520 - 102030531 AGCD01020477 MODEL 39132610 snorna SNORA70 Small nucleolar RNA SNORA70 8890232 protein-coding Timp4 TIMP metallopeptidase inhibitor 4 INVOLVED IN Notch signaling pathway (ortholog); ovulation cycle (ortholog); response to cytokine (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Arteriovenous Fistula (ortholog); Breast Neoplasms (ortholog); FOUND IN extracellular region (ortholog); sarcomere (ortholog) NW_004955429 14689016 14693211 - 102017362 AGCD01028784;GBDI01354181;XM_005387015 XP_005387072 MODEL 8808899 protein-coding Sack1b scaffolding CK1 anchoring protein B ENCODES a protein that exhibits D-type glycerophospholipase activity (ortholog); epidermal growth factor receptor binding (ortholog); phosphatidylinositol 3-kinase catalytic subunit binding (ortholog); INVOLVED IN cell population proliferation (ortholog); positive regulation of epidermal growth factor receptor signaling pathway (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog) NW_004955411 1248945 1306848 - 102005014 AGCD01011475;AGCD01011476;GBDJ01264594;XM_005377589;XM_013510904 XP_005377646;XP_013366358 MODEL 8939243 protein-coding Rbp4 retinol binding protein 4 ENCODES a protein that exhibits molecular carrier activity (ortholog); protein-containing complex binding (ortholog); retinol binding (ortholog); INVOLVED IN cardiac muscle tissue development (ortholog); detection of light stimulus involved in visual perception (ortholog); embryonic organ morphogenesis (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); acute pyelonephritis (ortholog); alcohol-associated liver disease (ortholog); FOUND IN extracellular region (ortholog); protein-containing complex (ortholog) NW_004955507 112342 120050 - 102029207 AGCD01065462;AGCD01065463;GBBH01117602;GBCE01001890;XM_013506237 XP_013361691 MODEL 10126974 ncrna LOC106148249 uncharacterized LOC106148249 NW_004955418 16852138 16860923 + 106148249 AGCD01019130;GBCQ01154323;XR_001233522 MODEL 8770722 protein-coding LOC102024589 hypoxanthine-guanine phosphoribosyltransferase-like NW_004955498 4154694 4155460 - 102024589 AGCD01062973;XM_005406405 XP_005406462 MODEL 9049702 protein-coding LOC102012903 CMRF35-like molecule 4 NW_004955553 1487167 1496439 - 102012903 AGCD01072886;GBCE01119428;XM_005412249;XM_005412250 XP_005412306;XP_005412307 MODEL 8839115 protein-coding Smpd1 sphingomyelin phosphodiesterase 1 ENCODES a protein that exhibits acid sphingomyelin phosphodiesterase activity (ortholog); phosphatidylcholine phospholipase C activity (ortholog); sphingomyelin phosphodiesterase activity (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); cellular response to UV (ortholog); ceramide biosynthetic process (ortholog); PARTICIPATES IN ceramide signaling pathway; FasL mediated signaling pathway; Trail mediated signaling pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); Gaucher's disease (ortholog); genetic disease (ortholog); FOUND IN endolysosome (ortholog); endosome (ortholog); extracellular region (ortholog) NW_004955414 22117929 22121744 + 102019263 AGCD01015443;GBDF01251766;XM_005380132;XM_005380133;XM_005380134 XP_005380189;XP_005380190;XP_005380191 MODEL 8721786 pseudo LOC102011286 mitochondrial import inner membrane translocase subunit Tim9 pseudogene NW_004955410 11964895 11965083 - 102011286 AGCD01010838 MODEL 9030742 ncrna LOC102023595 uncharacterized LOC102023595 NW_004955417 28744265 28772463 - 102023595 AGCD01018584;AGCD01018585;AGCD01018586;GBDF01225899;XR_001233406;XR_260509;XR_260510 MODEL 8833280 protein-coding Eny2 ENY2 transcription and export complex 2 subunit ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); poly(A)+ mRNA export from nucleus (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; FOUND IN DUBm complex (ortholog); nuclear pore nuclear basket (ortholog); SAGA complex (ortholog) NW_004955417 16750563 16760839 + 102022081 AGCD01018273;GBDF01088991;XM_005381877;XM_005381878 XP_005381934;XP_005381935 MODEL 8781001 protein-coding Rab19 RAB19, member RAS oncogene family ASSOCIATED WITH syndactyly (ortholog) NW_004955494 2878562 2885766 - 102021776 AGCD01061452;AGCD01061453;AGCD01061454;GBCQ01072981;XM_005405422 XP_005405479 MODEL 9004368 protein-coding Ppp1r15a protein phosphatase 1 regulatory subunit 15A ENCODES a protein that exhibits eukaryotic initiation factor eIF2 binding (ortholog); molecular adaptor activity (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to antibiotic (ortholog); cellular response to calcium ion starvation (ortholog); cellular response to carbohydrate stimulus (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Acute-On-Chronic Liver Failure (ortholog); Amaurosis Fugax (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955559 1750227 1753607 - 102029674 AGCD01073666;GBCQ01101763;XM_005412927 XP_005412984 MODEL 8886301 ncrna LOC102005663 uncharacterized LOC102005663 NW_004955405 42749975 42752628 - 102005663 AGCD01005586;GBDF01179322;XR_259461 MODEL 8843955 protein-coding Tradd TNFRSF1A associated via death domain ENCODES a protein that exhibits death domain binding (ortholog); identical protein binding (ortholog); kinase binding (ortholog); INVOLVED IN canonical NF-kappaB signal transduction (ortholog); cellular response to tumor necrosis factor (ortholog); extrinsic apoptotic signaling pathway (ortholog); PARTICIPATES IN ceramide signaling pathway; Toll-like receptor signaling pathway; Trail mediated signaling pathway; ASSOCIATED WITH Liver Reperfusion Injury (ortholog); Optic Nerve Injuries (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955484 9456268 9462425 + 102014361 AGCD01058415;GBDK01143327;XM_005403692;XM_013503962;XM_013503963 XP_005403749;XP_013359416;XP_013359417 MODEL 10293046 protein-coding LOC106149993 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955460 9935365 9938039 - 106149993 AGCD01048564;XM_013521114 XP_013376568 MODEL 9024960 protein-coding Peak3 PEAK family member 3 INVOLVED IN regulation of actin cytoskeleton organization (ortholog); regulation of cell shape (ortholog) NW_004955495 5866204 5869808 + 102013844 AGCD01062038;AGCD01062039;GBBH01110872;GBDK01304804;XM_013505238 XP_013360692 MODEL 8930423 pseudo LOC102028730 mortality factor 4-like protein 1 pseudogene NW_004955465 12954454 12956376 + 102028730 AGCD01050573 MODEL 8866233 protein-coding Rgs20 regulator of G protein signaling 20 INVOLVED IN response to amphetamine (ortholog); FOUND IN cytoplasm (ortholog); trans-Golgi network (ortholog) NW_004955454 13271409 13305730 + 102005338 AGCD01045432;GBDK01335709;XM_005396066 XP_005396123 MODEL 8957539 protein-coding Sorbs2 sorbin and SH3 domain containing 2 ENCODES a protein that exhibits identical protein binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN acetylcholine receptor signaling pathway (ortholog); cell growth involved in cardiac muscle cell development (ortholog); Notch signaling pathway (ortholog); ASSOCIATED WITH Weight Gain (ortholog); FOUND IN apical plasma membrane (ortholog); dendrite (ortholog); neuronal cell body (ortholog) NW_004955403 23295887 23503654 + 102021196 AGCD01002242;AGCD01002243;AGCD01002244;AGCD01002245;AGCD01002246;GBBH01186974;XM_013512887;XM_013512888;XM_013512891;XM_013512898;XM_013512906 XP_013368341;XP_013368342;XP_013368345;XP_013368352;XP_013368360 MODEL 8740820 protein-coding Sema3c semaphorin 3C ENCODES a protein that exhibits semaphorin receptor binding (ortholog); INVOLVED IN axon guidance (ortholog); blood vessel remodeling (ortholog); cardiac endothelial to mesenchymal transition (ortholog); ASSOCIATED WITH High Myopia (ortholog); Persistent Truncus Arteriosus (ortholog); rheumatoid arthritis (ortholog); FOUND IN extracellular region (ortholog) NW_004955410 4795658 4953460 + 102004789 AGCD01010670;AGCD01010671;AGCD01010672;AGCD01010673;GBBH01102036;GBDF01276791;XM_005377197 XP_005377254 MODEL 8835382 ncrna LOC102010538 uncharacterized LOC102010538 NW_004955403 1911461 1914126 - 102010538 AGCD01001726;GBDF01042347;XR_259133 MODEL 9052565 ncrna LOC102006753 uncharacterized LOC102006753 NW_004955463 9484775 9495936 + 102006753 AGCD01049784;AGCD01049785;XR_263163 MODEL 39133470 snrna U4 U4 spliceosomal RNA 8741746 protein-coding Ranbp3 RAN binding protein 3 ENCODES a protein that exhibits R-SMAD binding (ortholog); small GTPase binding (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955495 3495179 3549528 + 102020134 AGCD01061861;AGCD01061862;GBDF01011028;XM_005405743;XM_005405744;XM_005405745;XM_005405746;XM_005405747;XM_005405748;XM_005405749;XM_013505313 XP_005405800;XP_005405801;XP_005405802;XP_005405803;XP_005405804;XP_005405805;XP_005405806;XP_013360767 MODEL 8854997 pseudo LOC102028077 aftiphilin pseudogene NW_004955413 9019504 9021698 - 102028077 AGCD01013889 MODEL 8815794 protein-coding Wdr91 WD repeat domain 91 ENCODES a protein that exhibits phosphatidylinositol 3-kinase inhibitor activity (ortholog); INVOLVED IN early endosome to late endosome transport (ortholog); regulation of protein catabolic process (ortholog); ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytosol (ortholog); early endosome membrane (ortholog); endosome membrane (ortholog) NW_004955494 7441880 7470174 + 102013426 AGCD01061552;GBDF01015655;XM_005405487;XM_005405488 XP_005405544;XP_005405545 MODEL 9031681 protein-coding Slc7a7 solute carrier family 7 member 7 ENCODES a protein that exhibits basic amino acid transmembrane transporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); L-arginine transmembrane transport (ortholog); L-leucine transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); Chediak-Higashi syndrome (ortholog); genetic disease (ortholog); FOUND IN basolateral plasma membrane (ortholog); transmembrane transporter complex (ortholog) NW_004955409 37467151 37513533 + 102005677 AGCD01010521;AGCD01010522;AGCD01010523;GBBH01229030;XM_005377122;XM_005377123;XM_005377124;XM_005377126;XM_005377127;XM_013510452 XP_005377179;XP_005377180;XP_005377181;XP_005377183;XP_005377184;XP_013365906 MODEL 8734323 protein-coding LOC102012904 heterogeneous nuclear ribonucleoproteins A2/B1-like NW_004955442 15309996 15311329 - 102012904 AGCD01037865;GBDF01258035;XM_005391493 XP_005391550 MODEL 8782076 ncrna LOC102011289 uncharacterized LOC102011289 NW_004955411 10258447 10278073 - 102011289 AGCD01011777;GBDF01225406;XR_001232804 MODEL 9041808 protein-coding Eogt EGF domain specific O-linked N-acetylglucosamine transferase ENCODES a protein that exhibits protein O-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation (ortholog); ASSOCIATED WITH Adams-Oliver syndrome (ortholog); Adams-Oliver Syndrome 4 (ortholog); genetic disease (ortholog) NW_004955421 18845626 18879008 + 102013835 AGCD01022058;AGCD01022059;GBDJ01390366;XM_005383814;XM_005383815;XM_013513795 XP_005383871;XP_005383872;XP_013369249 MODEL 9026225 protein-coding Smpd2 sphingomyelin phosphodiesterase 2 ENCODES a protein that exhibits phosphoric diester hydrolase activity (ortholog); sphingomyelin phosphodiesterase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); ceramide metabolic process (ortholog); intracellular signal transduction (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; FOUND IN caveola (ortholog); plasma membrane (ortholog) NW_004955411 34481431 34484423 + 102019678 AGCD01012401;AGCD01012402;GBCE01076449;GBDF01046449;XM_005377875 XP_005377932 MODEL 8781993 protein-coding Slc22a7 solute carrier family 22 member 7 ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); prostaglandin transmembrane transporter activity (ortholog); secondary active transmembrane transporter activity (ortholog); INVOLVED IN alpha-ketoglutarate transport (ortholog); prostaglandin transport (ortholog); response to stilbenoid (ortholog); PARTICIPATES IN multispecific organic anion transporter mediated transport pathway; ASSOCIATED WITH Drug-Related Side Effects and Adverse Reactions (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955437 9204414 9210350 + 102007276 AGCD01034522;GBDJ01341934;XM_005389765 XP_005389822 MODEL 8786859 protein-coding Plin3 perilipin 3 INVOLVED IN cellular response to glucose starvation (ortholog); lipid droplet disassembly (ortholog); lipid storage (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); endosome membrane (ortholog); lipid droplet (ortholog) NW_004955495 4177701 4190052 + 102003035 AGCD01061900;AGCD01061901;GBDF01047898;XM_005405777;XM_013505193;XM_013505194 XP_005405834;XP_013360647;XP_013360648 MODEL 8832887 protein-coding LOC102007123 olfactory receptor 15-like NW_004955418 29652822 29653751 - 102007123 AGCD01019476;XM_005382358 XP_005382415 MODEL 41410888 protein-coding C16orf87 chromosome 16 open reading frame 87 9013611 ncrna LOC102021878 uncharacterized LOC102021878 NW_004955418 1272614 1293248 - 102021878 AGCD01018714;GBDF01122696;XR_260535 MODEL 8761538 pseudo LOC102018943 60S ribosomal protein L36a-like NW_004955424 12515538 12515906 - 102018943 AGCD01024613;XR_261058 MODEL 8924631 pseudo LOC102015908 syntenin-1 pseudogene NW_004955402 63207510 63211180 + 102015908 AGCD01001665 MODEL 8721581 protein-coding Ptov1 PTOV1 extended AT-hook containing adaptor protein ASSOCIATED WITH Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955559 1070856 1079052 - 102029454 AGCD01073628;AGCD01073629;GBDK01007823;GBDK01196056;XM_013508969 XP_013364423 MODEL 8869240 ncrna LOC102030534 uncharacterized LOC102030534 NW_004955486 4914038 4917893 + 102030534 AGCD01059072;GBCB01114727;XR_001231140;XR_001231141 MODEL 8772893 ncrna LOC102026404 uncharacterized LOC102026404 NW_004955460 9759496 9848335 + 102026404 AGCD01048549;AGCD01048550;AGCD01048551;AGCD01048552;AGCD01048553;AGCD01048554;AGCD01048555;AGCD01048556;GBDI01265244;XR_001236502;XR_001236503;XR_001236504;XR_001236505 MODEL 8718368 protein-coding Tinag tubulointerstitial nephritis antigen INVOLVED IN cell adhesion (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); FOUND IN basement membrane (ortholog) NW_004955411 1718969 1809370 - 102006107 AGCD01011487;AGCD01011488;AGCD01011489;AGCD01011490;GBCQ01040782;XM_005377590;XM_013510703 XP_005377647;XP_013366157 MODEL 8974542 trna Trnaa-agc transfer RNA alanine (anticodon AGC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978814 AGCD01022921;AGCD01037757;AGCD01039088;AGCD01050627;AGCD01050631;AGCD01052488;AGCD01057602;AGCD01057606;AGCD01058153 MODEL 8896656 ncrna LOC102019357 uncharacterized LOC102019357 NW_004955454 7197852 7234878 - 102019357 AGCD01045286;AGCD01045287;AGCD01045288;AGCD01045289;AGCD01045290;GBDF01123367;XR_001236239;XR_001236240;XR_001236241;XR_262780 MODEL 8844642 pseudo LOC102003880 transcription initiation factor TFIID subunit 7-like pseudogene NW_004955488 7941790 7996454 + 102003880 AGCD01059698;XM_005404481 MODEL 8731927 protein-coding Sft2d3 SFT2 domain containing 3 NW_004955459 2842452 2845045 - 102026837 AGCD01048003;GBDI01227745;XM_005397594 XP_005397651 MODEL 8800978 ncrna LOC102026040 uncharacterized LOC102026040 NW_004955436 13438968 13446439 + 102026040 AGCD01033858;GBDF01010335;XR_261789 MODEL 8871207 protein-coding LOC102009752 glutathione S-transferase Mu 2 NW_004955435 13200085 13206236 + 102009752 AGCD01033197;GBCQ01122645;XM_013516459;XM_013516460 XP_013371913;XP_013371914 MODEL 8865340 ncrna LOC102027392 uncharacterized LOC102027392 NW_004955465 10903017 10906856 - 102027392 AGCD01050516;GBDF01113407;XR_001236721 MODEL 8782196 protein-coding Lmbr1l limb development membrane protein 1 like ENCODES a protein that exhibits transmembrane signaling receptor activity (ortholog); INVOLVED IN hematopoietic stem cell differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); receptor-mediated endocytosis (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955500 7922422 7934538 - 102014922 AGCD01063960;AGCD01063961;GBBH01209783;GBDK01196940;XM_013505718 XP_013361172 MODEL 8743414 protein-coding Rab1a RAB1A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); cell migration (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog); endoplasmic reticulum (ortholog) NW_004955424 19393589 19421373 + 102004180 AGCD01024821;AGCD01024822;AGCD01024823;AGCD01024824;AGCD01024825;GBDF01051813;XM_005385692 XP_005385749 MODEL 9010642 protein-coding Ppp1r15b protein phosphatase 1 regulatory subunit 15B ENCODES a protein that exhibits eukaryotic initiation factor eIF2 binding (ortholog); molecular adaptor activity (ortholog); protein phosphatase 1 binding (ortholog); INVOLVED IN ER overload response (ortholog); negative regulation of protein phosphorylation (ortholog); response to endoplasmic reticulum stress (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); Microcephaly, Short Stature, and Impaired Glucose Metabolism 2 (ortholog); FOUND IN protein phosphatase type 1 complex (ortholog) NW_004955406 40232516 40238711 - 102024874 AGCD01006658;GBDF01119554;XM_013522788 XP_013378242 MODEL 8847762 protein-coding Wdr93 WD repeat domain 93 ASSOCIATED WITH autism spectrum disorder (ortholog) NW_004955416 15472866 15527853 - 102026636 AGCD01017332;AGCD01017333;AGCD01017334;AGCD01017335;GBDF01045871;XM_005381546;XM_005381547;XM_013512549;XM_013512550 XP_005381603;XP_005381604;XP_013368003;XP_013368004 MODEL 8812462 ncrna LOC102029113 uncharacterized LOC102029113 NW_004955526 552745 559537 - 102029113 AGCD01069241;GBDF01049553;XR_264655;XR_264656 MODEL 8720163 protein-coding Traf1 TNF receptor associated factor 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); thioesterase binding (ortholog); INVOLVED IN negative regulation of non-canonical NF-kappaB signal transduction (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of pyroptotic inflammatory response (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH multiple sclerosis (ortholog); patent ductus arteriosus (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytosol (ortholog) NW_004955419 7117869 7145274 + 102021974 AGCD01019874;GBDK01090336;XM_013513240;XM_013513241;XM_013513242;XR_001233625;XR_001233626 XP_013368694;XP_013368695;XP_013368696 MODEL 8743063 protein-coding LOC102017825 vomeronasal type-1 receptor 3-like NW_004955569 1124261 1125758 - 102017825 AGCD01074639;XM_005413519 XP_005413576 MODEL 9027258 pseudo LOC102010903 60S ribosomal protein L18a pseudogene NW_004955481 3813679 3814552 + 102010903 AGCD01056916 MODEL 8791147 protein-coding Prkch protein kinase C eta ENCODES a protein that exhibits diacylglycerol-dependent, calcium-independent serine/threonine kinase activity (ortholog); enzyme binding (ortholog); protein kinase activity (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); negative regulation of glial cell apoptotic process (ortholog); negative regulation of translation (ortholog); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH cerebral infarction (ortholog); obesity (ortholog); substance-related disorder (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955466 8178323 8393446 - 102013069 AGCD01050981;AGCD01050982;AGCD01050983;AGCD01050984;AGCD01050985;AGCD01050986;AGCD01050987;GBBH01024897;GBDF01082374;XM_005399165 XP_005399222 MODEL 8728391 protein-coding Sack1c scaffolding CK1 anchoring protein C ENCODES a protein that exhibits protein kinase binding (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytoplasm (ortholog) NW_004955422 26106053 26112548 + 102013731 AGCD01023275;GBBH01014061;XM_005384800 XP_005384857 MODEL 10131584 ncrna LOC106148250 uncharacterized LOC106148250 NW_004955418 22631731 22636649 + 106148250 AGCD01019289;GBDJ01372518;XR_001233523 MODEL 8950652 protein-coding Sorbs3 sorbin and SH3 domain containing 3 ENCODES a protein that exhibits vinculin binding (ortholog); INVOLVED IN cell-substrate adhesion (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of MAPK cascade (ortholog); FOUND IN cytoplasm (ortholog); focal adhesion (ortholog); nucleus (ortholog) NW_004955403 45973381 46003807 + 102009004 AGCD01002845;AGCD01002846;AGCD01002847;GBBH01031911;XM_005373666;XM_005373668;XM_005373669;XM_005373670;XM_005373671;XM_005373674;XM_005373675;XM_005373676;XM_013513844;XM_013513847 XP_005373723;XP_005373725;XP_005373726;XP_005373727;XP_005373728;XP_005373731;XP_005373732;XP_005373733;XP_013369298;XP_013369301 MODEL 8782053 protein-coding Ppp1r16a protein phosphatase 1 regulatory subunit 16A NW_004955454 3097218 3127896 + 102009458 AGCD01045051;AGCD01045052;AGCD01045053;AGCD01045054;AGCD01045055;AGCD01045056;AGCD01045057;GBCB01035513;XM_005395898;XM_005395899;XM_005395900 XP_005395955;XP_005395956;XP_005395957 MODEL 8701590 protein-coding LOC102006758 olfactory receptor 147-like NW_004955412 25230240 25240655 + 102006758 AGCD01013141;XM_005378417;XM_013510987 XP_005378474;XP_013366441 MODEL 8783807 protein-coding LOC102021880 olfactory receptor 1J4-like NW_004955419 5304875 5305914 - 102021880 AGCD01019801;XM_005382919 XP_005382976 MODEL 8959670 protein-coding LOC102028080 olfactory receptor 52E2-like NW_004955414 20723326 20724282 + 102028080 AGCD01015387;XM_005380478 XP_005380535 MODEL 9051784 pseudo LOC102005667 uncharacterized LOC102005667 NW_004955454 13267651 13286711 + 102005667 AGCD01045432 MODEL 8942296 protein-coding Ranbp3l RAN binding protein 3 like ENCODES a protein that exhibits SMAD binding (ortholog); INVOLVED IN mesenchymal cell differentiation involved in bone development (ortholog); negative regulation of osteoblast differentiation (ortholog); positive regulation of myoblast differentiation (ortholog) NW_004955426 21054463 21106290 - 102011888 AGCD01026578;AGCD01026579;AGCD01026580;GBCQ01004472;XM_013515011;XM_013515013;XM_013515014;XM_013515015 XP_013370465;XP_013370467;XP_013370468;XP_013370469 MODEL 8910622 protein-coding Rnasel ribonuclease L ENCODES a protein that exhibits identical protein binding (ortholog); ribonucleoprotein complex binding (ortholog); RNA binding (ortholog); INVOLVED IN fat cell differentiation (ortholog); negative regulation of viral genome replication (ortholog); positive regulation of D-glucose import across plasma membrane (ortholog); ASSOCIATED WITH Animal Viral Hepatitis (ortholog); anthrax disease (ortholog); Cardiovirus Infections (ortholog); FOUND IN cytosol (ortholog); nuclear matrix (ortholog) NW_004955406 21413950 21424860 - 102018057 AGCD01006127;GBDJ01421087;XM_005375004 XP_005375061 MODEL 9046730 protein-coding LOC102012905 tektin-4-like NW_004955442 16149329 16154459 + 102012905 AGCD01037891;AGCD01037892;GBDF01003534;XM_005391594 XP_005391651 MODEL 8848541 protein-coding Slc7a8 solute carrier family 7 member 8 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); antiporter activity (ortholog); glycine transmembrane transporter activity (ortholog); INVOLVED IN amino acid import across plasma membrane (ortholog); amino acid transport (ortholog); glycine transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH cataract (ortholog); Dwarfism (ortholog); endometriosis (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955409 37119189 37171300 + 102023671 AGCD01010497;AGCD01010498;GBDJ01075034;XM_013510441;XM_013510442;XM_013510443 XP_013365895;XP_013365896;XP_013365897 MODEL 39132619 snorna SNORA70 Small nucleolar RNA SNORA70 8951990 protein-coding Pck1 phosphoenolpyruvate carboxykinase 1 ENCODES a protein that exhibits carboxylic acid binding (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN cellular hyperosmotic response (ortholog); cellular hyperosmotic salinity response (ortholog); cellular hypotonic response (ortholog); PARTICIPATES IN forkhead class A signaling pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); celiac disease (ortholog); Chronic Intermittent Hypoxia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955445 1909012 1914032 - 102003594 AGCD01039347;GBDI01062602;XM_005392250 XP_005392307 MODEL 9047053 protein-coding Lmbrd1 LMBR1 domain containing 1 ENCODES a protein that exhibits ABC-type vitamin B12 transporter activity (ortholog); AP-2 adaptor complex binding (ortholog); clathrin heavy chain binding (ortholog); INVOLVED IN clathrin-dependent endocytosis (ortholog); gastrulation (ortholog); insulin receptor internalization (ortholog); ASSOCIATED WITH Donnai-Barrow syndrome (ortholog); genetic disease (ortholog); inherited metabolic disorder (ortholog); FOUND IN clathrin-coated endocytic vesicle (ortholog); clathrin-coated vesicle (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955488 4774835 4879401 - 102024687 AGCD01059605;AGCD01059606;GBBH01208099;XM_005404466 XP_005404523 MODEL 8955478 pseudo LOC102024591 dnaJ homolog subfamily C member 10 pseudogene NW_004955500 7129982 7156228 - 102024591 AGCD01063901;AGCD01063902 MODEL 8859033 protein-coding Sema3d semaphorin 3D ASSOCIATED WITH childhood-onset asthma (ortholog); Hirschsprung's disease (ortholog); sensorineural hearing loss (ortholog) NW_004955410 1356787 1510394 + 102029055 AGCD01010614;AGCD01010615;AGCD01010616;GBBH01117384;GBDF01039923;XM_005377189 XP_005377246 MODEL 8813485 ncrna LOC102011766 uncharacterized LOC102011766 NW_004955480 7767280 7832733 - 102011766 AGCD01056709;GBDI01142229;XR_001230909;XR_263746 MODEL 8987713 protein-coding LOC102015912 acyl-protein thioesterase 1-like NW_004955451 16240608 16241441 + 102015912 AGCD01043662;XM_005394451;XM_005394452 XP_005394508;XP_005394509 MODEL 8976325 protein-coding Prtg protogenin ENCODES a protein that exhibits identical protein binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN negative regulation of neurogenesis (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN plasma membrane (ortholog) NW_004955409 309885 405667 + 102019893 AGCD01009142;AGCD01009143;AGCD01009144;GBCE01179538;GBDF01074670;XM_013510014 XP_013365468 MODEL 8720601 pseudo LOC102018945 LIM domain only protein 3 pseudogene NW_004955498 2522907 2523749 + 102018945 AGCD01062802 MODEL 9029261 ncrna LOC102030535 uncharacterized LOC102030535 NW_004955420 25977618 25980499 - 102030535 AGCD01021383;GBDF01077167;XR_001233667 MODEL 8897517 protein-coding Ptp4a1 protein tyrosine phosphatase 4A1 ENCODES a protein that exhibits protein tyrosine phosphatase activity (ortholog); INVOLVED IN positive regulation of cell migration (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); early endosome (ortholog) NW_004955502 322827 329226 - 102023377 AGCD01064234;GBDK01070331;XM_005406875 XP_005406932 MODEL 9010934 protein-coding LOC102008619 E3 ISG15--protein ligase HERC5-like NW_004955474 12020037 12065002 - 102008619 AGCD01054645;AGCD01054646;GBBH01011708;GBCE01069694;XM_013502751 XP_013358205 MODEL 8868484 ncrna LOC102028732 uncharacterized LOC102028732 NW_004955467 312108 325867 + 102028732 AGCD01051217;AGCD01051218;GBCB01016625;XR_263322 MODEL 10320450 pseudo LOC106149994 AN1-type zinc finger protein 6 pseudogene NW_004955460 14141310 14146714 - 106149994 AGCD01048740 MODEL 10265514 ncrna LOC106147155 uncharacterized LOC106147155 NW_004955523 389441 393531 - 106147155 AGCD01068453;GBDI01278963;XR_001231925 MODEL 9060919 protein-coding Rgs21 regulator of G protein signaling 21 INVOLVED IN sensory perception of bitter taste (ortholog); sensory perception of sweet taste (ortholog); sensory perception of umami taste (ortholog) NW_004955406 29778745 29800009 + 102016886 AGCD01006341;AGCD01006342;XM_005375097 XP_005375154 MODEL 9001508 pseudo LOC102009753 ADP-ribosylation factor-like protein 15 pseudogene NW_004955436 1336836 1341038 - 102009753 AGCD01033575 MODEL 8739493 protein-coding Rbp5 retinol binding protein 5 NW_004955413 4682477 4689949 - 102012622 AGCD01013624;GBDF01211758;XM_005378859 XP_005378916 MODEL 126903047 protein-coding C17orf114 chromosome 17 open reading frame 114 8711447 protein-coding Rab1b RAB1B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); establishment of endothelial intestinal barrier (ortholog); Golgi organization (ortholog); ASSOCIATED WITH Myocardial Ischemia (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955422 19039741 19047088 - 102017133 AGCD01022973;GBDJ01003487;XM_005384425 XP_005384482 MODEL 8901704 protein-coding Slc22a8 solute carrier family 22 member 8 ENCODES a protein that exhibits antiporter activity (ortholog); prostaglandin transmembrane transporter activity (ortholog); protein kinase C binding (ortholog); INVOLVED IN glutathione transport (ortholog); prostaglandin transport (ortholog); quaternary ammonium group transport (ortholog); PARTICIPATES IN ibuprofen pharmacodynamics pathway; ibuprofen pharmacokinetics pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Experimental Liver Cirrhosis (ortholog); Human Influenza (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955599 284038 299603 + 102002974 AGCD01076637;GBDF01062374;XM_005414750;XM_005414751;XM_005414752 XP_005414807;XP_005414808;XP_005414809 MODEL 8973725 protein-coding LOC102029119 dual specificity protein phosphatase 13 NW_004955437 16974568 16980907 + 102029119 AGCD01034724;GBCB01003889;GBDI01170251;XM_013517067;XM_013517068;XM_013517069 XP_013372521;XP_013372522;XP_013372523 MODEL 39133471 snrna U4 U4 spliceosomal RNA 8805325 protein-coding Wdr97 WD repeat domain 97 NW_004955454 2769356 2778024 + 102023430 AGCD01045033;GBCB01051894;XM_005395848;XM_013520172;XM_013520173;XM_013520174;XM_013520175;XR_001236234 XP_005395905;XP_013375626;XP_013375627;XP_013375628;XP_013375629 MODEL 8914888 ncrna LOC102012908 uncharacterized LOC102012908 NW_004955444 12340446 12343731 - 102012908 AGCD01039069;GBDK01125336;XR_262259 MODEL 8827655 protein-coding Traf2 TNF receptor associated factor 2 ENCODES a protein that exhibits CD40 receptor binding (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN canonical NF-kappaB signal transduction (ortholog); CD27 signaling pathway (ortholog); CD40 signaling pathway (ortholog); PARTICIPATES IN c-Jun N-terminal kinases MAPK signaling pathway; ceramide signaling pathway; p38 MAPK signaling pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); Transplant Rejection (ortholog); FOUND IN CD40 receptor complex (ortholog); cell cortex (ortholog); cytoplasm (ortholog) NW_004955513 4964692 4984359 + 102025152 AGCD01066949;GBCE01188361;XM_013506639;XM_013506640 XP_013362093;XP_013362094 MODEL 8987140 protein-coding Prkci protein kinase C iota ENCODES a protein that exhibits diacylglycerol-dependent, calcium-independent serine/threonine kinase activity (ortholog); phospholipid binding (ortholog); protein kinase activity (ortholog); INVOLVED IN actin filament organization (ortholog); cell migration (ortholog); cell-cell junction organization (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin signaling pathway; interleukin-1 signaling pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); autistic disorder (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); bicellular tight junction (ortholog) NW_004955420 423406 486676 + 102020013 AGCD01020544;GBDF01041815;XM_005382978 XP_005383035 MODEL 8832226 protein-coding Tinagl1 tubulointerstitial nephritis antigen like 1 ENCODES a protein that exhibits cysteine-type peptidase activity (ortholog); laminin binding (ortholog); INVOLVED IN proteolysis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955452 9995658 10007418 + 102010121 AGCD01044267;GBCE01096097;XM_005395027;XM_005395028 XP_005395084;XP_005395085 MODEL 8911504 pseudo LOC102019358 60S ribosomal protein L18a pseudogene NW_004955454 14060960 14061488 - 102019358 AGCD01045461 MODEL 8891422 ncrna LOC102011290 uncharacterized LOC102011290 NW_004955464 5744512 5747225 + 102011290 AGCD01050012;AGCD01050013;GBDF01041677;XR_263200 MODEL 8959521 protein-coding Sfta2 surfactant associated 2 FOUND IN Golgi apparatus (ortholog) NW_004955583 865226 866360 - 102022442 AGCD01075871;GBDK01021573;XM_005414328 XP_005414385 MODEL 8827863 protein-coding LOC102003881 olfactory receptor-like protein OLF3 NW_004955491 257421 258371 + 102003881 AGCD01060325;XM_005404721 XP_005404778 MODEL 8809504 pseudo LOC102026041 periphilin-1 pseudogene NW_004955529 485527 486763 - 102026041 AGCD01069639;XM_005410092 MODEL 8992801 pseudo LOC102021882 protein RUFY3 pseudogene NW_004955420 9999064 10000427 + 102021882 AGCD01020772 MODEL 9027502 protein-coding Sorcs1 sortilin related VPS10 domain containing receptor 1 ASSOCIATED WITH Alzheimer's disease 6 (ortholog); prostate cancer (ortholog); proteinuria (ortholog); FOUND IN membrane (ortholog) NW_004955485 3719006 4222143 + 102020807 AGCD01058546;AGCD01058547;AGCD01058548;AGCD01058549;AGCD01058550;AGCD01058551;AGCD01058552;AGCD01058553;AGCD01058554;AGCD01058555;AGCD01058556;GBBH01078182;XM_013504127 XP_013359581 MODEL 8830862 protein-coding Eola1 endothelium and lymphocyte associated ASCH domain 1 INVOLVED IN regulation of gene expression (ortholog); regulation of interleukin-6 production (ortholog); FOUND IN mitochondrion (ortholog) NW_004955498 1911103 1916645 + 102021893 AGCD01062753;GBDJ01129367;XM_005406399 XP_005406456 MODEL 8980809 protein-coding Smpd3 sphingomyelin phosphodiesterase 3 ENCODES a protein that exhibits identical protein binding (ortholog); neutral sphingomyelin phosphodiesterase activity (ortholog); phosphatidic acid binding (ortholog); INVOLVED IN artery smooth muscle contraction (ortholog); BMP signaling pathway (ortholog); bone development (ortholog); PARTICIPATES IN ceramide signaling pathway; ASSOCIATED WITH chronic obstructive pulmonary disease (ortholog); hypopituitarism (ortholog); leukemia (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); Golgi cis cisterna (ortholog) NW_004955484 8207686 8298164 + 102008416 AGCD01058372;AGCD01058373;AGCD01058374;GBCE01078867;XM_005403580;XM_013503919;XM_013503920 XP_005403637;XP_013359373;XP_013359374 MODEL 8841187 protein-coding LOC102027393 uncharacterized LOC102027393 NW_004955465 12822774 12827715 + 102027393 AGCD01050563;AGCD01050564;XM_013521780 XP_013377234 MODEL 10131559 protein-coding Plin4 perilipin 4 ASSOCIATED WITH Vacuolar Neuromyopathy (ortholog); FOUND IN cytosol (ortholog); lipid droplet (ortholog); plasma membrane (ortholog) NW_004955495 4417672 4426945 + 106146790 AGCD01061922;GBDK01147195;XM_013505186;XM_013505187 XP_013360640;XP_013360641 MODEL 39134515 ribozyme RNaseP_nuc Nuclear RNase P 8881134 pseudo LOC102007124 allograft inflammatory factor 1 pseudogene NW_004955419 15234825 15235399 - 102007124 AGCD01020068;XR_260632 MODEL 8700055 ncrna LOC102023600 uncharacterized LOC102023600 NW_004955483 8636126 8641695 + 102023600 AGCD01057841;GBCB01042012;XR_263871;XR_263873 MODEL 8710020 ncrna LOC102017826 uncharacterized LOC102017826 NW_004955447 224885 228738 - 102017826 AGCD01040449;GBDI01039983;XR_262402 MODEL 9066139 protein-coding Ranbp6 RAN binding protein 6 FOUND IN mitochondrion (ortholog); synapse (ortholog) NW_004955434 9995734 9999194 - 102005836 AGCD01032317;GBBH01071300;XM_005388668;XM_005388670 XP_005388725;XP_005388727 MODEL 9031176 protein-coding LOC102010909 zinc finger protein 621 NW_004955420 29420972 29427337 - 102010909 AGCD01021500;GBDF01074480;XM_005383573;XM_005383574;XM_013513402;XM_013513403;XM_013513404;XM_013513405;XM_013513406;XM_013513407 XP_005383630;XP_005383631;XP_013368856;XP_013368857;XP_013368858;XP_013368859;XP_013368860;XP_013368861 MODEL 8877264 protein-coding Rgs22 regulator of G protein signaling 22 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); fibrillar center (ortholog) NW_004955417 15284368 15381984 - 102014356 AGCD01018227;AGCD01018228;AGCD01018229;AGCD01018230;AGCD01018231;GBBH01116898;XM_013512826 XP_013368280 MODEL 8857531 protein-coding Sack1d scaffolding CK1 anchoring protein D ENCODES a protein that exhibits kinesin binding (ortholog); microtubule binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cell migration (ortholog); cell population proliferation (ortholog); epithelial to mesenchymal transition (ortholog); ASSOCIATED WITH glioblastoma (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); microtubule cytoskeleton (ortholog) NW_004955445 17837099 17861421 - 102007604 AGCD01039896;AGCD01039897;GBDI01089938;XM_005392523 XP_005392580 MODEL 8957602 protein-coding LOC102024592 tubulin polymerization-promoting protein NW_004955504 341155 416050 - 102024592 AGCD01064817;AGCD01064818;AGCD01064819;GBBH01000645;XM_005407009;XM_005407010;XM_013505871;XM_013505872;XM_013505873;XM_013505874;XM_013505875;XM_013505876;XM_013505877;XM_013505878;XM_013505879;XM_013505880;XM_013505881;XM_013505882;XM_013505883;XM_013505884;XM_013505885;XM_013505886 XP_005407066;XP_005407067;XP_013361325;XP_013361326;XP_013361327;XP_013361328;XP_013361329;XP_013361330;XP_013361331;XP_013361332;XP_013361333;XP_013361334;XP_013361335;XP_013361336;XP_013361337;XP_013361338;XP_013361339;XP_013361340 MODEL 8965750 protein-coding LOC102030542 uncharacterized LOC102030542 NW_004955493 8018141 8020227 + 102030542 AGCD01061256;GBDF01017368;XM_005405306 XP_005405363 MODEL 8852521 protein-coding Wdsub1 WD repeat, sterile alpha motif and U-box domain containing 1 ASSOCIATED WITH autistic disorder (ortholog) NW_004955449 14301798 14348735 + 102006968 AGCD01042164;GBDI01172204;XM_005393376;XM_005393377;XM_013518706;XM_013518707;XR_001235809 XP_005393433;XP_005393434;XP_013374160;XP_013374161 MODEL 8833983 pseudo LOC102018946 40S ribosomal protein S16-like NW_004955424 2059622 2060278 + 102018946 AGCD01024262 MODEL 9039500 protein-coding Ppp1r16b protein phosphatase 1 regulatory subunit 16B ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); INVOLVED IN establishment of endothelial barrier (ortholog); positive regulation of blood vessel endothelial cell proliferation involved in sprouting angiogenesis (ortholog); positive regulation of endothelial cell proliferation (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955445 17864103 17961295 - 102008675 AGCD01039897;GBDI01295625;XM_005392527;XM_005392529 XP_005392584;XP_005392586 MODEL 9062452 protein-coding Prune1 prune exopolyphosphatase 1 ENCODES a protein that exhibits phosphatase activity (ortholog); tubulin binding (ortholog); INVOLVED IN regulation of microtubule polymerization (ortholog); regulation of neurogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, HYPOTONIA, AND VARIABLE BRAIN ANOMALIES (ortholog); FOUND IN cytosol (ortholog) NW_004955588 379793 408441 + 102019126 AGCD01076108;AGCD01076109;GBCQ01093042;XM_005414471;XM_013509914;XM_013509915 XP_005414528;XP_013365368;XP_013365369 MODEL 8982276 ncrna LOC102005668 uncharacterized LOC102005668 NW_004955408 4130103 4136421 + 102005668 AGCD01008089;GBDF01241145;XR_259658 MODEL 8840502 protein-coding LOC102028081 E3 ubiquitin-protein ligase MARCH3 NW_004955415 269 149486 - 102028081 AGCD01015829;AGCD01015830;AGCD01015831;AGCD01015832;GBBH01214860;GBDK01230758;XM_005380539;XM_013512355 XP_005380596;XP_013367809 MODEL 39132628 snorna SNORA70 Small nucleolar RNA SNORA70 8731340 protein-coding LOC102003886 olfactory receptor 4X1-like NW_004955422 269162 270091 - 102003886 AGCD01022401;XM_005384932 XP_005384989 MODEL 8772923 protein-coding Slc7a9 solute carrier family 7 member 9 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); antiporter activity (ortholog); broad specificity neutral L-amino acid:basic L-amino acid antiporter activity (ortholog); INVOLVED IN amino acid transport (ortholog); L-cystine transport (ortholog); neutral amino acid transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH cystinuria (ortholog); genetic disease (ortholog); kidney disease (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); plasma membrane (ortholog) NW_004955468 5112057 5201272 + 102027509 AGCD01051949;AGCD01051950;AGCD01051951;AGCD01051952;AGCD01051953;AGCD01051954;AGCD01051955;AGCD01051956;AGCD01051957;AGCD01051958;AGCD01051959;GBCQ01035248;GBDF01209757;XM_005400078 XP_005400135 MODEL 8713459 protein-coding Rab20 RAB20, member RAS oncogene family INVOLVED IN cellular response to type II interferon (ortholog); phagosome acidification (ortholog); phagosome-lysosome fusion (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN Golgi apparatus (ortholog); phagocytic vesicle (ortholog) NW_004955404 2087580 2088545 + 102014972 AGCD01003250;GBCQ01098101;GBDK01193260;XM_013515757 XP_013371211 MODEL 10363241 ncrna LOC106148251 uncharacterized LOC106148251 NW_004955418 17892090 17895117 - 106148251 AGCD01019161;GBDF01249862;XR_001233524 MODEL 8797676 protein-coding Pear1 platelet endothelial aggregation receptor 1 ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); platelet aggregation (ortholog); positive regulation of platelet activation (ortholog); FOUND IN lamellipodium (ortholog); phagocytic cup (ortholog); plasma membrane (ortholog) NW_004955545 2958334 2977146 + 102014178 AGCD01071930;GBDI01177513;XM_005411722;XM_013508217;XM_013508218;XM_013508219;XM_013508220;XM_013508221;XM_013508222;XM_013508223 XP_005411779;XP_013363671;XP_013363672;XP_013363673;XP_013363674;XP_013363675;XP_013363676;XP_013363677 MODEL 8949876 ncrna LOC102029124 uncharacterized LOC102029124 NW_004955441 19339530 19404185 - 102029124 AGCD01037343;AGCD01037344;AGCD01037345;AGCD01037346;GBDF01041758;XR_262094 MODEL 8952236 ncrna LOC102015917 uncharacterized LOC102015917 NW_004955452 10492790 10517508 - 102015917 AGCD01044277;AGCD01044278;GBDF01085013;XR_262675 MODEL 8834394 pseudo LOC102006759 serum albumin-like NW_004955412 36036768 36051307 + 102006759 AGCD01013427;AGCD01013428;AGCD01013429;AGCD01013430;XM_005378660 MODEL 8744471 protein-coding Slc23a1 solute carrier family 23 member 1 ENCODES a protein that exhibits dehydroascorbic acid transmembrane transporter activity (ortholog); L-ascorbate:sodium symporter activity (ortholog); L-ascorbic acid transmembrane transporter activity (ortholog); INVOLVED IN brain development (ortholog); dehydroascorbic acid transport (ortholog); L-ascorbic acid transmembrane transport (ortholog); ASSOCIATED WITH cholestasis (ortholog); Experimental Liver Cirrhosis (ortholog); Intracranial Hemorrhages (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); brush border (ortholog) NW_004955418 1176390 1192270 + 102019599 AGCD01018712;GBDJ01116644;XM_005382074;XM_005382075;XM_005382076;XM_005382077;XM_013512911 XP_005382131;XP_005382132;XP_005382133;XP_005382134;XP_013368365 MODEL 8777141 protein-coding Ptp4a2 protein tyrosine phosphatase 4A2 ENCODES a protein that exhibits enzyme inhibitor activity (ortholog); ASSOCIATED WITH diastolic heart failure (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955452 10293958 10331868 - 102013578 AGCD01044271;AGCD01044272;AGCD01044273;GBDI01068104;XM_005395037 XP_005395094 MODEL 10224400 ncrna LOC106147156 uncharacterized LOC106147156 NW_004955523 441502 444200 - 106147156 AGCD01068457;GBDI01249007;XR_001231926 MODEL 10381713 pseudo LOC106149995 ubiquitin carboxyl-terminal hydrolase 42 pseudogene NW_004955460 9938049 9942676 - 106149995 AGCD01048564 MODEL 9008329 pseudo LOC102026042 uncharacterized protein C3orf26 homolog NW_004955436 2931930 2958614 - 102026042 AGCD01033615 MODEL 9019673 protein-coding LOC102026408 small integral membrane protein 8 NW_004955411 14320554 14439894 + 102026408 AGCD01011916;AGCD01011917;AGCD01011918;GBCB01073145;XM_005377724;XM_005377725;XM_005377726;XM_013510845;XM_013510846;XM_013510847;XM_013510848;XM_013510849;XM_013510850;XM_013510851;XM_013510852;XM_013510853;XM_013510854;XM_013510856;XM_013510857;XM_013510858 XP_005377781;XP_005377782;XP_005377783;XP_013366299;XP_013366300;XP_013366301;XP_013366302;XP_013366303;XP_013366304;XP_013366305;XP_013366306;XP_013366307;XP_013366308;XP_013366310;XP_013366311;XP_013366312 MODEL 8940705 protein-coding LOC102009755 pre-mRNA-processing factor 6 NW_004955528 243869 278279 - 102009755 AGCD01069519;AGCD01069520;AGCD01069521;AGCD01069522;AGCD01069523;GBCQ01156965;XM_013507476;XM_013507477;XM_013507478;XM_013507479;XM_013507480;XM_013507481 XP_013362930;XP_013362931;XP_013362932;XP_013362933;XP_013362934;XP_013362935 MODEL 8805042 protein-coding Pck2 phosphoenolpyruvate carboxykinase 2, mitochondrial ENCODES a protein that exhibits manganese ion binding (ortholog); phosphoenolpyruvate carboxykinase (GTP) activity (ortholog); phosphoenolpyruvate carboxykinase activity (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to tumor necrosis factor (ortholog); gluconeogenesis (ortholog); PARTICIPATES IN gluconeogenesis pathway; ASSOCIATED WITH COVID-19 (ortholog); Endotoxemia (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955409 36288402 36296761 - 102013806 AGCD01010454;GBCQ01006485;XM_005377053 XP_005377110 MODEL 8830541 ncrna LOC102005676 uncharacterized LOC102005676 NW_004955460 10833953 10838057 + 102005676 AGCD01048618;AGCD01048619;GBDI01033534;XR_263054 MODEL 39134514 ribozyme RNaseP_nuc Nuclear RNase P 8864384 protein-coding C1d C1D nuclear receptor corepressor ENCODES a protein that exhibits DNA binding (ortholog); nuclear receptor binding (ortholog); RNA binding (ortholog); INVOLVED IN maturation of 5.8S rRNA (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN ribosome biogenesis pathway; FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955424 16787094 16801600 + 102024132 AGCD01024753;GBDF01045582;XM_013514751 XP_013370205 MODEL 8801141 protein-coding Sorcs2 sortilin related VPS10 domain containing receptor 2 INVOLVED IN intracellular protein transport (ortholog); long-term synaptic depression (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); early endosome membrane (ortholog); perikaryon (ortholog) NW_004955514 3053127 3390125 - 102008341 AGCD01067092;AGCD01067093;AGCD01067094;GBBH01141459;GBDJ01136170;XM_005408856 XP_005408913 MODEL 8874235 trna Trnaa-cgc transfer RNA alanine (anticodon CGC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955483;NW_004955419;NW_004955449 326792;20242611;16876672 326863;20242682;16876743 -;-;- 101978817 AGCD01020232;AGCD01042230;AGCD01057606 MODEL 8703620 protein-coding Plin5 perilipin 5 ENCODES a protein that exhibits identical protein binding (ortholog); lipase binding (ortholog); INVOLVED IN cell activation (ortholog); gene expression (ortholog); intracellular signaling cassette (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lipid droplet (ortholog) NW_004955495 4406590 4414783 + 102008639 AGCD01061922;GBCB01043643;XM_013505191;XM_013505192 XP_013360645;XP_013360646 MODEL 9022173 protein-coding Smpd4 sphingomyelin phosphodiesterase 4 ENCODES a protein that exhibits sphingomyelin phosphodiesterase activity (ortholog); sphingomyelin phosphodiesterase D activity (ortholog); INVOLVED IN cellular response to tumor necrosis factor (ortholog); ceramide biosynthetic process (ortholog); endoplasmic reticulum organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); neurodevelopmental disorder with microcephaly, arthrogryposis, and structural brain anomalies (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955442 19184794 19210999 - 102018777 AGCD01038040;GBCQ01008827;XM_005391811;XM_005391812;XM_005391813 XP_005391868;XP_005391869;XP_005391870 MODEL 8763919 pseudo LOC102017827 dnaJ homolog subfamily A member 1 pseudogene NW_004955448 18477355 18478527 + 102017827 AGCD01041746 MODEL 8860760 protein-coding LOC102011767 galectin-5-like NW_004955481 5476020 5485385 + 102011767 AGCD01056980;AGCD01056981;GBDF01261565;XM_005402778;XM_005402779 XP_005402835;XP_005402836 MODEL 8919715 ncrna LOC102012909 uncharacterized LOC102012909 NW_004955445 3519216 3530963 + 102012909 AGCD01039396;GBDF01083032;XR_262300 MODEL 8910465 protein-coding LOC102010912 claudin-34-like NW_004955493 6423748 6424605 - 102010912 AGCD01061103;GBDF01011330;GBDK01381044;XM_005405150 XP_005405207 MODEL 8956492 pseudo LOC102008621 josephin-1 pseudogene NW_004955477 274210 274810 + 102008621 AGCD01055485 MODEL 8983906 protein-coding LOC102010539 T-complex protein 1 subunit alpha-like NW_004957703 193 1109 - 102010539 AGCD01081099;GBCC01015007;GBDI01244130;XM_005415234 XP_005415291 MODEL 8741994 protein-coding Traf3 TNF receptor associated factor 3 ENCODES a protein that exhibits identical protein binding (ortholog); protein kinase binding (ortholog); protein phosphatase binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); positive regulation of type I interferon production (ortholog); regulation of cytokine production (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH Ependymomas (ortholog); Herpes Simplex Encephalitis (ortholog); immunodeficiency 132A (ortholog); FOUND IN CD40 receptor complex (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955538 1954152 2013367 + 102004116 AGCD01071093;GBBH01188734;XM_005410757;XM_005410759;XM_005410760;XM_005410761;XM_005410762;XM_013507875;XM_013507877 XP_005410814;XP_005410816;XP_005410817;XP_005410818;XP_005410819;XP_013363329;XP_013363331 MODEL 8751044 protein-coding Ranbp9 RAN binding protein 9 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN negative regulation of ERK1 and ERK2 cascade (ortholog); positive regulation of amyloid precursor protein catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955465 1042649 1122824 + 102010784 AGCD01050330;AGCD01050331;GBBH01102333;GBDF01003318;XM_005398797 XP_005398854 MODEL 9047727 protein-coding Tiparp TCDD inducible poly(ADP-ribose) polymerase ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN androgen metabolic process (ortholog); estrogen metabolic process (ortholog); face morphogenesis (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN nucleus (ortholog) NW_004955448 7687668 7716481 + 102019653 AGCD01041422;GBDF01125248;XM_005393080 XP_005393137 MODEL 8707053 protein-coding LOC102028733 putative uncharacterized protein FLJ38447 NW_004955467 9024888 9027668 + 102028733 AGCD01051481;GBDI01045379;XM_005399449 XP_005399506 MODEL 9023679 protein-coding Rab21 RAB21, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); positive regulation of dendrite morphogenesis (ortholog); positive regulation of early endosome to late endosome transport (ortholog); ASSOCIATED WITH obesity (ortholog); FOUND IN cleavage furrow (ortholog); cytoplasmic side of early endosome membrane (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955405 11766674 11778637 + 102019564 AGCD01004842;GBCB01003208;GBCE01134842;XM_013517632 XP_013373086 MODEL 8889983 ncrna LOC102018951 uncharacterized LOC102018951 NW_004955427 1405325 1413360 - 102018951 AGCD01026873;GBDJ01101157;XR_261223 MODEL 8731185 protein-coding Sftpb surfactant protein B INVOLVED IN cellular response to mechanical stimulus (ortholog); cellular response to nitric oxide (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); adult respiratory distress syndrome (ortholog); asthma (ortholog); FOUND IN alveolar lamellar body (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955424 1849313 1858087 + 102025136 AGCD01024248;GBDK01014342;XM_005385414;XM_005385415;XM_005385416;XM_005385417 XP_005385471;XP_005385472;XP_005385473;XP_005385474 MODEL 8951396 protein-coding Lmbrd2 LMBR1 domain containing 2 INVOLVED IN adrenergic receptor signaling pathway (ortholog); ASSOCIATED WITH body dysmorphic disorder (ortholog); DEVELOPMENTAL DELAY WITH VARIABLE NEUROLOGIC AND BRAIN ABNORMALITIES (ortholog); Developmental Disabilities (ortholog) NW_004955426 20928323 20972371 - 102010820 AGCD01026576;GBDI01384158;XM_005386204;XM_005386205 XP_005386261;XP_005386262 MODEL 8924199 protein-coding LOC102021884 zinc finger and SCAN domain-containing protein 2-like NW_004955491 5000354 5007435 + 102021884 AGCD01060466;GBDK01264771;XM_005404781;XM_005404782;XM_005404783;XM_005404784;XM_005404785;XM_005404786;XM_013504603;XM_013504604 XP_005404838;XP_005404839;XP_005404840;XP_005404841;XP_005404842;XP_005404843;XP_013360057;XP_013360058 MODEL 9013478 protein-coding Eomes eomesodermin ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN astrocyte differentiation (ortholog); blastocyst development (ortholog); brain development (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; ASSOCIATED WITH anxiety disorder (ortholog); autoimmune disease of the nervous system (ortholog); Colonic Neoplasms (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955430 19280460 19287060 - 102018517 AGCD01029712;GBDJ01152655;XM_005387507 XP_005387564 MODEL 39133472 snrna U4 U4 spliceosomal RNA 8753009 protein-coding Sema3e semaphorin 3E ENCODES a protein that exhibits receptor ligand activity (ortholog); semaphorin receptor binding (ortholog); INVOLVED IN branching involved in blood vessel morphogenesis (ortholog); gonadotrophin-releasing hormone neuronal migration to the hypothalamus (ortholog); negative regulation of angiogenesis (ortholog); ASSOCIATED WITH amenorrhea (ortholog); CHARGE syndrome (ortholog); dilated cardiomyopathy (ortholog) NW_004955410 2732983 2831220 + 102013591 AGCD01010635;GBBH01036865;GBDI01386388;XM_013510666 XP_013366120 MODEL 9036209 protein-coding Slc8a1 solute carrier family 8 member A1 ENCODES a protein that exhibits ankyrin binding (ortholog); calcium ion binding (ortholog); calcium:monoatomic cation antiporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration (ortholog); INVOLVED IN calcium ion export (ortholog); calcium ion homeostasis (ortholog); calcium ion import (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); brain ischemia (ortholog); Cardiomegaly (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); basolateral plasma membrane (ortholog) NW_004955441 7653107 8037784 - 102017708 AGCD01036968;AGCD01036969;AGCD01036970;AGCD01036971;AGCD01036972;AGCD01036973;AGCD01036974;GBCQ01100771;XM_005390909;XM_005390910;XM_005390911;XM_005390912;XM_013517578;XM_013517579;XM_013517580;XM_013517581;XM_013517582 XP_005390966;XP_005390967;XP_005390968;XP_005390969;XP_013373032;XP_013373033;XP_013373034;XP_013373035;XP_013373036 MODEL 8812973 ncrna LOC102019360 uncharacterized LOC102019360 NW_004955455 1777137 1777874 + 102019360 AGCD01045584;GBDF01053108;XR_262814 MODEL 10075823 ncrna LOC106148252 uncharacterized LOC106148252 NW_004955418 15933832 15938242 + 106148252 AGCD01019113;GBCE01061091;XR_001233528 MODEL 8857758 pseudo LOC102015923 homeobox protein Meis2 pseudogene NW_004955407 24891666 24892871 + 102015923 AGCD01007485;XR_259579 MODEL 8839133 protein-coding Rgs3 regulator of G protein signaling 3 PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH bladder disease (ortholog); Experimental Liver Cirrhosis (ortholog); lesion of sciatic nerve (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955419 13918274 14042090 - 102019811 AGCD01020009;GBBH01229198;XM_005382663;XM_005382665;XM_005382666;XM_005382668;XM_005382669;XM_005382670;XM_005382672;XM_005382673;XM_013513122;XM_013513124 XP_005382720;XP_005382722;XP_005382723;XP_005382725;XP_005382726;XP_005382727;XP_005382729;XP_005382730;XP_013368576;XP_013368578 MODEL 8849685 protein-coding LOC102006768 uncharacterized LOC102006768 NW_004955415 15273704 15346189 - 102006768 AGCD01016337;AGCD01016338;XM_013512130 XP_013367584 MODEL 8900294 protein-coding Pebp1 phosphatidylethanolamine binding protein 1 ENCODES a protein that exhibits ATP binding (ortholog); enzyme binding (ortholog); kinase binding (ortholog); INVOLVED IN eating behavior (ortholog); hippocampus development (ortholog); MAPK cascade (ortholog); PARTICIPATES IN the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN apical part of cell (ortholog); axon terminus (ortholog); cell surface (ortholog) NW_004955455 13217012 13222370 - 102019570 AGCD01046060;GBBH01000809;GBCQ01004424;XM_013520338 XP_013375792 MODEL 8859859 protein-coding LOC102027396 taste receptor type 2 member 31-like NW_004955413 8337527 8352322 - 102027396 AGCD01013859;XM_005379638 XP_005379695 MODEL 8715826 pseudo LOC102028082 MORC family CW-type zinc finger protein 2 pseudogene NW_004955474 6210799 6214924 + 102028082 AGCD01054460;XM_005401381 MODEL 8971569 protein-coding LOC102007129 cyclic nucleotide-binding domain-containing protein 2-like NW_004955488 6614698 6616169 - 102007129 AGCD01059662;XM_013504412 XP_013359866 MODEL 8971984 ncrna LOC102023602 uncharacterized LOC102023602 NW_004955420 10924063 10957818 - 102023602 AGCD01020796;GBDF01145322;XR_260699 MODEL 8897770 protein-coding Rbpj recombination signal binding protein for immunoglobulin kappa J region ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN angiogenesis (ortholog); aortic valve development (ortholog); arterial endothelial cell fate commitment (ortholog); PARTICIPATES IN Notch signaling pathway; Notch signaling pathway; ASSOCIATED WITH Adams-Oliver syndrome (ortholog); Adams-Oliver syndrome 3 (ortholog); aortic valve disease (ortholog); FOUND IN CSL-Notch-Mastermind transcription factor complex (ortholog); cytoplasm (ortholog); MAML1-RBP-Jkappa- ICN1 complex (ortholog) NW_004955443 18783061 19029441 - 102017716 AGCD01038610;AGCD01038611;AGCD01038612;AGCD01038613;AGCD01038614;AGCD01038615;AGCD01038616;GBCQ01095808;XM_005392029;XM_005392030;XM_013518082;XM_013518083;XM_013518084;XM_013518085 XP_005392086;XP_005392087;XP_013373536;XP_013373537;XP_013373538;XP_013373539 MODEL 10274622 protein-coding LOC106149996 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955460 9943924 10051409 - 106149996 AGCD01048564;AGCD01048565;AGCD01048566;AGCD01048567;AGCD01048568;AGCD01048569;GBDF01277242;XM_013521137;XM_013521138 XP_013376591;XP_013376592 MODEL 8745190 ncrna LOC102026043 uncharacterized LOC102026043 NW_004955540 2042878 2048223 - 102026043 AGCD01071309;GBDK01150011;XR_264823 MODEL 8813809 protein-coding Rab22a RAB22A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN endocytosis (ortholog); endosome organization (ortholog); regulation of vesicle size (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasmic vesicle (ortholog); early endosome (ortholog) NW_004955445 1167941 1224932 - 102021493 AGCD01039330;AGCD01039331;AGCD01039332;AGCD01039333;AGCD01039334;GBBH01076597;GBDK01284734;XM_013518261 XP_013373715 MODEL 8871813 ncrna LOC102024593 uncharacterized LOC102024593 NW_004955427 12460417 12476643 - 102024593 AGCD01027214;AGCD01027215;GBDF01222863;XR_001234408;XR_001234409 MODEL 9057264 ncrna LOC102017828 uncharacterized LOC102017828 NW_004955402 45460545 45502507 - 102017828 AGCD01001136;AGCD01001137;AGCD01001138;AGCD01001139;AGCD01001140;GBDF01236164;XR_259092 MODEL 8956589 protein-coding LOC102012915 uncharacterized LOC102012915 NW_004955450 14986194 14993012 + 102012915 AGCD01042775;GBDF01058226;XM_013518836 XP_013374290 MODEL 8965033 protein-coding Smpdl3a sphingomyelin phosphodiesterase acid like 3A ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); phosphoric diester hydrolase activity (ortholog); ribonucleoside triphosphate phosphatase activity (ortholog); INVOLVED IN negative regulation of cGAS/STING signaling pathway (ortholog); nucleoside triphosphate catabolic process (ortholog); sphingomyelin catabolic process (ortholog); ASSOCIATED WITH endometriosis (ortholog); FOUND IN extracellular region (ortholog) NW_004955436 4655730 4663993 + 102027008 AGCD01033671;GBCE01075939;GBDJ01277043;XM_005389295 XP_005389352 MODEL 8753322 trna Trnaa-ggc transfer RNA alanine (anticodon GGC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955403;NW_004955407;NW_004955423;NW_004955421;NW_004955454 2513557;3403311;23453225;6344906;5926569 2513628;3403382;23453296;6344977;5926641 +;+;+;+;- 101978815 AGCD01001737;AGCD01006858;AGCD01021736;AGCD01024005;AGCD01045196 MODEL 8959674 protein-coding Wdtc1 WD and tetratricopeptide repeats 1 ENCODES a protein that exhibits enzyme inhibitor activity (ortholog); histone binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); glucose metabolic process (ortholog); in utero embryonic development (ortholog); FOUND IN Cul4A-RING E3 ubiquitin ligase complex (ortholog); Cul4B-RING E3 ubiquitin ligase complex (ortholog); cytosol (ortholog) NW_004955452 6519628 6581333 + 102028819 AGCD01044114;AGCD01044115;AGCD01044116;AGCD01044117;GBDF01050605;XM_005394896;XM_005394898 XP_005394953;XP_005394955 MODEL 8756240 protein-coding Sorcs3 sortilin related VPS10 domain containing receptor 3 INVOLVED IN learning (ortholog); memory (ortholog); positive regulation of synaptic transmission (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog); postsynaptic density (ortholog) NW_004955485 5474081 6048912 - 102013176 AGCD01058597;AGCD01058598;AGCD01058599;AGCD01058600;AGCD01058601;AGCD01058602;AGCD01058603;AGCD01058604;AGCD01058605;GBDF01016069;XM_005403919 XP_005403976 MODEL 8758934 protein-coding Prune2 prune homolog 2 with BCH domain ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN glutamatergic synapse (ortholog); presynapse (ortholog) NW_004955512 2469773 2727067 + 102010829 AGCD01066680;AGCD01066681;AGCD01066682;AGCD01066683;AGCD01066684;GBDJ01112903;XM_013506527 XP_013361981 MODEL 8924289 protein-coding Ppp1r17 protein phosphatase 1 regulatory subunit 17 ENCODES a protein that exhibits phosphatase inhibitor activity (ortholog); protein phosphatase inhibitor activity (ortholog); protein serine/threonine phosphatase inhibitor activity (ortholog); INVOLVED IN regulation of phosphatase activity (ortholog); ASSOCIATED WITH familial hypercholesterolemia (ortholog); Hypercholesterolemia (ortholog) NW_004955410 32720954 32737676 + 102027052 AGCD01011349;XM_005377523;XM_005377524 XP_005377580;XP_005377581 MODEL 10064437 ncrna LOC106147158 uncharacterized LOC106147158 NW_004955523 203543 211843 + 106147158 AGCD01068437;GBBH01115508;XR_001231941 MODEL 8883652 protein-coding Traf3ip2 TRAF3 interacting protein 2 ENCODES a protein that exhibits signaling receptor binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN B cell affinity maturation (ortholog); B cell apoptotic process (ortholog); B cell homeostasis (ortholog); ASSOCIATED WITH atopic dermatitis (ortholog); Candidiasis, Familial, 8 (ortholog); psoriasis (ortholog); FOUND IN cytoplasmic vesicle (ortholog); nucleus (ortholog) NW_004955411 36328152 36363614 - 102003742 AGCD01012471;AGCD01012472;GBDK01225046;XM_005377909;XM_013510877 XP_005377966;XP_013366331 MODEL 8836357 protein-coding Ptp4a3 protein tyrosine phosphatase 4A3 INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); endothelial cell migration (ortholog); Notch signaling pathway (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955454 429051 440328 + 102015689 AGCD01044958;GBDI01229359;XM_005395723;XM_013520280;XM_013520281;XM_013520282 XP_005395780;XP_013375734;XP_013375735;XP_013375736 MODEL 8703988 protein-coding Rangap1 Ran GTPase activating protein 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); RNA binding (ortholog); small GTPase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); cellular response to peptide hormone stimulus (ortholog); cellular response to vasopressin (ortholog); PARTICIPATES IN CRM1 export pathway; ASSOCIATED WITH Carotid Artery Injuries (ortholog); diffuse large B-cell lymphoma (ortholog); nephronophthisis-like nephropathy 1 (ortholog); FOUND IN axon cytoplasm (ortholog); cytoplasm (ortholog); cytoplasmic periphery of the nuclear pore complex (ortholog) NW_004955413 26869487 26894192 - 102016691 AGCD01014485;GBDJ01275353;XM_005379343;XM_005379344;XM_013511354 XP_005379400;XP_005379401;XP_013366808 MODEL 8856685 protein-coding Prkcq protein kinase C theta ENCODES a protein that exhibits diacylglycerol-dependent serine/threonine kinase activity (ortholog); diacylglycerol-dependent, calcium-independent serine/threonine kinase activity (ortholog); protein kinase activity (ortholog); INVOLVED IN cell chemotaxis (ortholog); intracellular signal transduction (ortholog); membrane protein ectodomain proteolysis (ortholog); PARTICIPATES IN eicosanoid signaling pathway; endothelin signaling pathway; insulin signaling pathway; ASSOCIATED WITH Crohn's disease (ortholog); Hyperammonemia (ortholog); hyperinsulinism (ortholog); FOUND IN centriolar satellite (ortholog); cytoplasm (ortholog); immunological synapse (ortholog) NW_004955421 23072607 23151591 - 102005151 AGCD01022171;AGCD01022172;AGCD01022173;GBDI01221492;XM_005383869;XM_013513782 XP_005383926;XP_013369236 MODEL 8848632 protein-coding Lmcd1 LIM and cysteine rich domains 1 ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of calcineurin-NFAT signaling cascade (ortholog); regulation of cardiac muscle hypertrophy (ortholog); ASSOCIATED WITH coronary stenosis (ortholog); mitral valve insufficiency (ortholog); mitral valve prolapse (ortholog); FOUND IN nucleus (ortholog) NW_004955561 151315 213904 + 102025852 AGCD01073819;GBCE01030182;XM_005412996;XM_013509111 XP_005413053;XP_013364565 MODEL 8917411 protein-coding Sack1e scaffolding CK1 anchoring protein E ENCODES a protein that exhibits protein kinase binding (ortholog); FOUND IN cytoplasm (ortholog) NW_004955559 1933345 1942707 + 102009231 AGCD01073682;GBBH01186442;XM_005412949;XM_013509066 XP_005413006;XP_013364520 MODEL 9027845 protein-coding LOC102018952 developmental pluripotency-associated protein 2 NW_004955427 10138627 10147729 - 102018952 AGCD01027128;GBDF01014812;XM_005386364 XP_005386421 MODEL 8864407 protein-coding C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 ENCODES a protein that exhibits N-acetylgalactosaminide beta-1,3-galactosyltransferase activity (ortholog); INVOLVED IN angiogenesis (ortholog); intestinal epithelial cell development (ortholog); kidney development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN membrane (ortholog) NW_004955432 14298873 14353824 + 102025281 AGCD01031042;GBBH01190693;XM_005388090 XP_005388147 MODEL 8959014 ncrna LOC102029138 uncharacterized LOC102029138 NW_004955451 1336951 1339225 + 102029138 AGCD01042966;GBDF01040402;XR_001235994 MODEL 39133474 snrna U4 U4 spliceosomal RNA 9019218 protein-coding LOC102030543 uncharacterized LOC102030543 NW_004955494 1191365 1192214 - 102030543 AGCD01061392;GBDI01256273;XM_005405527 XP_005405584 MODEL 8713648 protein-coding Plk1 polo like kinase 1 ENCODES a protein that exhibits anaphase-promoting complex binding (ortholog); ATP binding (ortholog); identical protein binding (ortholog); INVOLVED IN astral microtubule organization (ortholog); centrosome cycle (ortholog); double-strand break repair (ortholog); ASSOCIATED WITH breast carcinoma (ortholog); COVID-19 (ortholog); endometriosis (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955493 2206353 2217231 + 102023160 AGCD01060935;GBCQ01178810;XM_005405103 XP_005405160 MODEL 8993993 protein-coding Slc23a2 solute carrier family 23 member 2 ENCODES a protein that exhibits L-ascorbate:sodium symporter activity (ortholog); L-ascorbic acid transmembrane transporter activity (ortholog); INVOLVED IN blood circulation (ortholog); cellular response to ethanol (ortholog); L-ascorbic acid metabolic process (ortholog); ASSOCIATED WITH Binge Drinking (ortholog); cholestasis (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955415 15565344 15677935 - 102009494 AGCD01016349;AGCD01016350;AGCD01016351;AGCD01016352;AGCD01016353;GBCE01023386;XM_005380822;XM_005380823 XP_005380879;XP_005380880 MODEL 8860040 protein-coding Rbpjl recombination signal binding protein for immunoglobulin kappa J region like ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH maturity-onset diabetes of the young type 1 (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955445 12017500 12029507 - 102008674 AGCD01039731;GBCE01101674;XM_005392436 XP_005392493 MODEL 8759747 pseudo LOC102010913 cationic trypsin-3-like NW_004955494 1211669 1216586 + 102010913 AGCD01061392 MODEL 8950005 pseudo LOC102010540 Golgi apparatus membrane protein TVP23 homolog B pseudogene NW_004955403 54262808 54264290 + 102010540 AGCD01003090 MODEL 9015840 protein-coding LOC102019361 serine/threonine-protein kinase B-raf-like NW_004955407 3772121 3773907 - 102019361 AGCD01006864;GBDJ01076254;XM_005375516 XP_005375573 MODEL 8822557 protein-coding Slc8a2 solute carrier family 8 member A2 ENCODES a protein that exhibits calcium ion transmembrane transporter activity (ortholog); calcium:monoatomic cation antiporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration (ortholog); calcium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion export across plasma membrane (ortholog); calcium ion import across plasma membrane (ortholog); calcium ion transmembrane transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); brain ischemia (ortholog); Reperfusion Injury (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cell projection (ortholog) NW_004955574 1290907 1315399 - 102010647 AGCD01075172;AGCD01075173;GBDF01287717;GBDJ01063990;XM_005413871 XP_005413928 MODEL 8914555 ncrna LOC102003895 uncharacterized LOC102003895 NW_004955429 23679053 23685472 + 102003895 AGCD01029078;GBDF01277697;XR_001234522;XR_261397 MODEL 9053556 pseudo LOC102015924 pre-mRNA-splicing factor SPF27 pseudogene NW_004955455 8675269 8676207 + 102015924 AGCD01045904 MODEL 8900454 pseudo LOC102026409 putative vomeronasal receptor-like protein 4 NW_004955465 12721739 12722676 - 102026409 AGCD01050556 MODEL 9022588 ncrna LOC102028083 uncharacterized LOC102028083 NW_004955415 21781622 21798286 + 102028083 AGCD01016515;AGCD01016516;XR_001233184;XR_260309 MODEL 8752224 ncrna LOC102005678 uncharacterized LOC102005678 NW_004955461 3800451 3869319 - 102005678 AGCD01048855;GBDF01224739;XR_001236555;XR_263076;XR_263077 MODEL 8753807 protein-coding Wee1 WEE1 G2 checkpoint kinase ENCODES a protein that exhibits protein kinase activity (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN establishment of cell polarity (ortholog); microtubule cytoskeleton organization (ortholog); negative regulation of G2/M transition of mitotic cell cycle (ortholog); ASSOCIATED WITH head and neck squamous cell carcinoma (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955414 25281725 25299242 + 102030298 AGCD01015590;AGCD01015591;GBDF01053736;GBDI01132275;XM_005380269 XP_005380326 MODEL 8702184 protein-coding Sftpc surfactant protein C ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); cellular response to nitric oxide (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); asthma (ortholog); bacterial pneumonia (ortholog); FOUND IN alveolar lamellar body (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955403 45649149 45651421 + 102004547 AGCD01002825;GBDK01013470;XM_005373651;XM_005373652 XP_005373708;XP_005373709 MODEL 9057001 protein-coding LOC102011291 cytochrome P450 4A11-like NW_004955464 11487951 11500616 - 102011291 AGCD01050155;GBBH01214209;XM_005398645;XM_005398647 XP_005398702;XP_005398704 MODEL 8765011 pseudo LOC102011771 glucose-induced degradation protein 8 homolog pseudogene NW_004955419 29922246 29923728 - 102011771 AGCD01020515 MODEL 9046093 protein-coding Ep300 EP300 lysine acetyltransferase ENCODES a protein that exhibits acetylation-dependent protein binding (ortholog); acetyltransferase activity (ortholog); acyltransferase activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); apoptotic process (ortholog); B cell differentiation (ortholog); PARTICIPATES IN androgen signaling pathway; cortisol signaling pathway; estrogen signaling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Agenesis of Corpus Callosum (ortholog); alcohol use disorder (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955413 26647553 26727875 + 102015395 AGCD01014465;AGCD01014466;AGCD01014467;GBBH01093312;GBDF01017704;XM_005379339 XP_005379396 MODEL 8720264 protein-coding LOC102026044 A-kinase anchor protein 17A-like NW_004955439 8813335 8830470 - 102026044 AGCD01035813;GBDF01082647;XM_005390568;XM_013517409 XP_005390625;XP_013372863 MODEL 8833379 protein-coding Sema3f semaphorin 3F ENCODES a protein that exhibits chemorepellent activity (ortholog); INVOLVED IN axon extension involved in axon guidance (ortholog); axon guidance (ortholog); branchiomotor neuron axon guidance (ortholog); ASSOCIATED WITH Endometrial Neoplasms (ortholog); Hearing Loss (ortholog); hypogonadotropic hypogonadism (ortholog); FOUND IN glutamatergic synapse (ortholog) NW_004955532 1992417 2015879 + 102025393 AGCD01070209;GBCE01029838;XM_013507643;XM_013507644 XP_013363097;XP_013363098 MODEL 39131736 snorna SNORA70 Small nucleolar RNA SNORA70 8758607 pseudo LOC102024594 kinesin-associated protein 3 pseudogene NW_004955427 21459739 21461843 - 102024594 AGCD01027445 MODEL 8969865 pseudo LOC102028735 adrenodoxin-like NW_004955413 9248941 9254022 - 102028735 AGCD01013902 MODEL 8845450 protein-coding Tipin TIMELESS interacting protein INVOLVED IN cell cycle phase transition (ortholog); DNA damage checkpoint signaling (ortholog); DNA replication checkpoint signaling (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955450 9259838 9279479 + 102029924 AGCD01042589;GBDF01222347;XM_005415299;XM_013518980 XP_005415356;XP_013374434 MODEL 9065087 pseudo LOC102006771 thyroid hormone receptor-associated protein 3-like NW_004955416 9263788 9266478 + 102006771 AGCD01017083 MODEL 8762834 ncrna LOC102009756 uncharacterized LOC102009756 NW_004955437 596440 600236 + 102009756 AGCD01034150;AGCD01034151;GBDF01305486;XR_261820 MODEL 8955739 ncrna LOC102010918 uncharacterized LOC102010918 NW_004955496 4040916 4059796 - 102010918 AGCD01062307;AGCD01062308;GBDF01279073;XR_264175 MODEL 9018738 protein-coding Smpdl3b sphingomyelin phosphodiesterase acid like 3B ENCODES a protein that exhibits phosphoric diester hydrolase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN lipid catabolic process (ortholog); negative regulation of inflammatory response (ortholog); negative regulation of toll-like receptor signaling pathway (ortholog); FOUND IN plasma membrane (ortholog) NW_004955452 7114746 7138924 + 102011498 AGCD01044133;AGCD01044134;AGCD01044135;AGCD01044136;GBDK01112309;XM_005394936;XM_013519538;XM_013519539 XP_005394993;XP_013374992;XP_013374993 MODEL 8826588 protein-coding Rgs4 regulator of G protein signaling 4 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GTPase activator activity (ortholog); protein kinase binding (ortholog); INVOLVED IN dorsal root ganglion development (ortholog); negative regulation of cell growth involved in cardiac muscle cell development (ortholog); negative regulation of dopamine receptor signaling pathway (ortholog); PARTICIPATES IN acetylcholine signaling pathway via muscarinic acetylcholine receptor; calcium signaling pathway via the calcium-sensing receptor; dopamine signaling pathway via D1 family of receptors; ASSOCIATED WITH alcohol dependence (ortholog); bladder disease (ortholog); Drug-Induced Dyskinesia (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955462 13340812 13347598 - 102009474 AGCD01049425;GBCQ01144636;XM_005398260;XM_005398261 XP_005398317;XP_005398318 MODEL 9011810 protein-coding Pebp4 phosphatidylethanolamine binding protein 4 FOUND IN extracellular region (ortholog) NW_004955403 46126263 46317830 - 102015475 AGCD01002850;AGCD01002851;AGCD01002852;AGCD01002853;AGCD01002854;AGCD01002855;GBBH01102343;XM_005373691;XM_013513921 XP_005373748;XP_013369375 MODEL 39134513 ribozyme RNaseP_nuc Nuclear RNase P 153211020 protein-coding PRUNE2 prune homolog 2 with BCH domain 8805859 protein-coding Pclaf PCNA clamp associated factor ENCODES a protein that exhibits chromatin binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN centrosome cycle (ortholog); DNA damage response (ortholog); DNA replication (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN centrosome (ortholog); nucleus (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955450 11072778 11082687 + 102017408 AGCD01042647;GBDJ01061984;XM_005393754;XM_013518866 XP_005393811;XP_013374320 MODEL 8720593 protein-coding Ppp1r18 protein phosphatase 1 regulatory subunit 18 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955583 673634 681439 - 102018043 AGCD01075848;AGCD01075849;AGCD01075850;GBDI01067824;GBDK01075378;XM_005414315 XP_005414372 MODEL 9017287 protein-coding LOC102021885 zinc finger protein 709-like NW_004955494 8355432 8383974 + 102021885 AGCD01061583;AGCD01061584;GBDF01086917;XM_013505020 XP_013360474 MODEL 9061857 protein-coding LOC102023608 olfactory receptor-like protein OLF3 NW_004955491 271119 272075 + 102023608 AGCD01060326;XM_005404878 XP_005404935 MODEL 8933510 ncrna LOC102008623 uncharacterized LOC102008623 NW_004955479 10170741 10180244 - 102008623 AGCD01056526;AGCD01056527;GBDI01103470;XR_263739 MODEL 8851084 protein-coding Traf3ip3 TRAF3 interacting protein 3 ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein-macromolecule adaptor activity (ortholog); zf-TRAF domain binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to interferon-alpha (ortholog); cellular response to interferon-beta (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog); mitochondrial membrane (ortholog) NW_004955489 2442319 2468683 - 102022708 AGCD01059871;GBBH01229221;XM_005404533;XM_013504476;XM_013504477;XM_013504478;XM_013504479;XM_013504480 XP_005404590;XP_013359930;XP_013359931;XP_013359932;XP_013359933;XP_013359934 MODEL 9042646 protein-coding Rangrf RAN guanine nucleotide release factor ENCODES a protein that exhibits channel activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); mitotic spindle assembly (ortholog); positive regulation of membrane depolarization during cardiac muscle cell action potential (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Cardiac Arrhythmias (ortholog); Experimental Autoimmune Encephalomyelitis (ortholog); FOUND IN caveola (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955467 8622843 8624401 - 102019489 AGCD01051463;GBDI01136193;XM_005399416 XP_005399473 MODEL 8787961 protein-coding Ptpa protein phosphatase 2 phosphatase activator ENCODES a protein that exhibits ATP binding (ortholog); phosphatase binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN positive regulation of apoptotic process (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH Disease Progression (ortholog); Parkinson's disease 25 (ortholog); Stomach Neoplasms (ortholog); FOUND IN ATPase complex (ortholog); calcium channel complex (ortholog); cytoplasm (ortholog) NW_004955570 1429316 1454820 + 102015788 AGCD01074814;GBDI01022159;XM_005413611 XP_005413668 MODEL 8761037 protein-coding LOC102003900 CSC1-like protein 1 NW_004955520 110432 115131 + 102003900 AGCD01068006;GBBH01033679;GBCC01001992;XM_013507053 XP_013362507 MODEL 8918680 pseudo LOC102028084 uracil-DNA glycosylase pseudogene NW_004955475 10526466 10549904 + 102028084 AGCD01055099;AGCD01055100 MODEL 8926920 ncrna LOC102018953 uncharacterized LOC102018953 NW_004955506 2648403 2663497 - 102018953 AGCD01065298;AGCD01065299;GBDF01001236;XR_001231580;XR_001231581;XR_264336 MODEL 8739743 protein-coding Prkcsh PRKCSH beta subunit of glucosidase II ENCODES a protein that exhibits calcium ion binding (ortholog); phosphoprotein binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); liver development (ortholog); N-glycan processing (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatitis B (ortholog); liver disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); glucosidase II complex (ortholog) NW_004955495 2331075 2338479 + 102023373 AGCD01061767;GBCQ01000664;XM_005405665;XM_013505112 XP_005405722;XP_013360566 MODEL 8864949 protein-coding Lmf1 lipase maturation factor 1 INVOLVED IN chylomicron remnant clearance (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); glycoprotein biosynthetic process (ortholog); ASSOCIATED WITH epilepsy (ortholog); familial lipase maturation factor 1 deficiency (ortholog); Hypertriglyceridemia (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955442 16250131 16360907 + 102013881 AGCD01037893;AGCD01037894;AGCD01037895;AGCD01037896;AGCD01037897;AGCD01037898;GBDJ01272886;XM_005391597 XP_005391654 MODEL 10086298 protein-coding LOC106148253 uncharacterized LOC106148253 NW_004955418 2378409 2379069 - 106148253 AGCD01018768;GBCQ01060690;GBDF01156099;XM_013512993 XP_013368447 MODEL 9059064 pseudo LOC102030544 cyclin-dependent kinase 1-like NW_004955422 27585190 27589366 + 102030544 AGCD01023327 MODEL 8703187 protein-coding LOC102017830 WAP four-disulfide core domain protein 18-like NW_004955451 195886 200393 + 102017830 AGCD01042928;GBCC01009398;XM_005393904;XM_005393905 XP_005393961;XP_005393962 MODEL 8909408 trna Trnaa-ugc transfer RNA alanine (anticodon UGC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978816 AGCD01006174;AGCD01008468;AGCD01026910;AGCD01041021;AGCD01044158;AGCD01045001;AGCD01050627;AGCD01050630;AGCD01051583;AGCD01057078;AGCD01057309;AGCD01064062;AGCD01069830 MODEL 8707427 protein-coding Ep400 E1A binding protein p400 ENCODES a protein that exhibits chromatin binding (ortholog); protein antigen binding (ortholog); INVOLVED IN gene expression (ortholog); nervous system development (ortholog); positive regulation of double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955482 639316 746331 - 102022599 AGCD01057180;AGCD01057181;AGCD01057182;AGCD01057183;AGCD01057184;AGCD01057185;AGCD01057186;GBCQ01006240;XM_005402961;XM_013503598;XM_013503599;XM_013503600;XM_013503601;XM_013503602;XM_013503603;XM_013503604;XM_013503605;XM_013503606;XM_013503607;XM_013503608 XP_005403018;XP_013359052;XP_013359053;XP_013359054;XP_013359055;XP_013359056;XP_013359057;XP_013359058;XP_013359059;XP_013359060;XP_013359061;XP_013359062 MODEL 9036369 protein-coding Sord sorbitol dehydrogenase ENCODES a protein that exhibits (R,R)-butanediol dehydrogenase activity (ortholog); D-xylulose reductase activity (ortholog); identical protein binding (ortholog); INVOLVED IN D-glucuronate catabolic process to D-xylulose 5-phosphate (ortholog); D-sorbitol catabolic process (ortholog); D-sorbitol metabolic process (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; ASSOCIATED WITH autosomal recessive distal hereditary motor neuronopathy 8 (ortholog); cataract (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN cytosol (ortholog); extracellular exosome (ortholog); membrane (ortholog) NW_004955409 8305819 8333733 - 102024653 AGCD01009393;AGCD01009394;GBCQ01010097;XM_005376745;XM_013510316 XP_005376802;XP_013365770 MODEL 39131708 snorna SNORA71 Small nucleolar RNA SNORA71 8863543 ncrna LOC102024595 uncharacterized LOC102024595 NW_004955428 4794656 4795986 - 102024595 AGCD01027700;GBDF01264382;XR_261295 MODEL 8951238 ncrna LOC102007135 uncharacterized LOC102007135 NW_004955425 7696784 7698489 - 102007135 AGCD01025391;XR_261135 MODEL 10251936 protein-coding LOC106149997 basic proline-rich protein-like NW_004955460 10360557 10360799 + 106149997 AGCD01048580;GBBH01150818;XM_013521139 XP_013376593 MODEL 8841867 protein-coding LOC102028738 olfactory receptor 52A1-like NW_004955414 20814451 20816038 + 102028738 AGCD01015389;XM_005380480 XP_005380537 MODEL 8873907 protein-coding LOC102019362 low affinity sodium-glucose cotransporter-like NW_004955455 6325614 6404676 - 102019362 AGCD01045787;AGCD01045788;AGCD01045789;AGCD01045790;AGCD01045791;AGCD01045792;GBDI01239871;XM_005396351;XM_005396352 XP_005396408;XP_005396409 MODEL 8714133 protein-coding LOC102015927 olfactory receptor 6C68 NW_004955458 2895155 2896093 + 102015927 AGCD01047255;XM_005397246 XP_005397303 MODEL 8737893 protein-coding C1galt1c1 C1GALT1 specific chaperone 1 ENCODES a protein that exhibits N-acetylgalactosaminide beta-1,3-galactosyltransferase activity (ortholog); INVOLVED IN platelet activation (ortholog); platelet morphogenesis (ortholog); protein O-linked glycosylation (ortholog); ASSOCIATED WITH atypical hemolytic-uremic syndrome (ortholog); congenital disorder of glycosylation (ortholog); HEMOLYTIC UREMIC SYNDROME, ATYPICAL, 8, WITH RHIZOMELIC SHORT STATURE (ortholog) NW_004955572 1254289 1258561 + 102030253 AGCD01074947;GBBH01193344;XM_005413651 XP_005413708 MODEL 9007412 protein-coding Sftpd surfactant protein D ENCODES a protein that exhibits identical protein binding (ortholog); lipopolysaccharide binding (ortholog); monosaccharide binding (ortholog); INVOLVED IN lung alveolus development (ortholog); negative regulation of interleukin-2 production (ortholog); negative regulation of phagocytosis (ortholog); PARTICIPATES IN forkhead class A signaling pathway; surfactant homeostasis pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); adult respiratory distress syndrome (ortholog); asthma (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); multivesicular body (ortholog) NW_004955510 213468 226096 + 102025710 AGCD01066142;GBDK01010352;XM_005407866;XM_005407867;XM_013506331 XP_005407923;XP_005407924;XP_013361785 MODEL 9034902 protein-coding Slc23a3 solute carrier family 23 member 3 INVOLVED IN hypoxanthine transport (ortholog); ASSOCIATED WITH cerebrotendinous xanthomatosis (ortholog) NW_004955453 14271343 14278233 + 102022157 AGCD01044861;GBCQ01068748;XM_005395589;XM_005395590 XP_005395646;XP_005395647 MODEL 8949239 pseudo LOC102003901 epidermal growth factor receptor substrate 15 pseudogene NW_004955433 95292 97670 + 102003901 AGCD01031301 MODEL 10152498 protein-coding LOC106147159 cartilage oligomeric matrix protein-like NW_004955524 2877761 2878420 + 106147159 AGCD01068842;GBBH01184703;XM_013507184 XP_013362638 MODEL 8859028 ncrna LOC102028085 uncharacterized LOC102028085 NW_004955477 2000812 2010821 - 102028085 AGCD01055516;GBDF01104976;XR_001230820 MODEL 8922542 protein-coding LOC102012916 tripartite motif-containing protein 60 NW_004955403 40239714 40250397 - 102012916 AGCD01002675;AGCD01002676;GBDF01161849;XM_005373589;XM_013515246;XM_013515248 XP_005373646;XP_013370700;XP_013370702 MODEL 8874983 protein-coding Ptpdc1 protein tyrosine phosphatase domain containing 1 INVOLVED IN cilium assembly (ortholog); smoothened signaling pathway (ortholog) NW_004955515 3912495 4044999 + 102021161 AGCD01067307;AGCD01067308;AGCD01067309;AGCD01067310;AGCD01067311;AGCD01067312;AGCD01067313;GBDF01081967;XM_005408888;XM_005408890;XM_005408891;XM_005408892;XM_005408894 XP_005408945;XP_005408947;XP_005408948;XP_005408949;XP_005408951 MODEL 8932546 protein-coding Slc8a3 solute carrier family 8 member A3 ENCODES a protein that exhibits calcium:monoatomic cation antiporter activity (ortholog); calcium:monoatomic cation antiporter activity involved in regulation of postsynaptic cytosolic calcium ion concentration (ortholog); calcium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion export across plasma membrane (ortholog); calcium ion import across plasma membrane (ortholog); calcium ion transmembrane transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); brain ischemia (ortholog); prostate cancer (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cell projection (ortholog) NW_004955466 220346 359627 + 102023887 AGCD01050656;AGCD01050657;AGCD01050658;AGCD01050659;GBCB01020048;XM_005399022;XM_005399024;XM_005399025;XM_005399027;XM_013522004 XP_005399079;XP_005399081;XP_005399082;XP_005399084;XP_013377458 MODEL 8838677 protein-coding LOC102026412 olfactory receptor 6X1 NW_004955412 24492889 24493833 - 102026412 AGCD01013115;XM_005378396 XP_005378453 MODEL 9068054 protein-coding Smpx small muscle protein X-linked ASSOCIATED WITH Distal Myopathy 7 (ortholog); genetic disease (ortholog); Hearing Loss (ortholog); FOUND IN contractile muscle fiber (ortholog); costamere (ortholog); cytoplasm (ortholog) NW_004955509 2043854 2185294 - 102010078 AGCD01065988;AGCD01065989;AGCD01065990;AGCD01065991;AGCD01065992;GBCB01004982;XM_005407820;XM_005407822;XM_005407823;XM_013506295 XP_005407877;XP_005407879;XP_005407880;XP_013361749 MODEL 9041603 protein-coding Sack1f scaffolding CK1 anchoring protein F ASSOCIATED WITH Asthenozoospermia (ortholog); oligospermia (ortholog); Teratozoospermia (ortholog); FOUND IN plasma membrane (ortholog) NW_004955413 25775107 25807592 + 102006999 AGCD01014414;GBDF01112276;XM_005379307 XP_005379364 MODEL 39133485 snrna U4 U4 spliceosomal RNA 8853652 protein-coding Wee2 WEE2 oocyte meiosis inhibiting kinase INVOLVED IN female meiotic nuclear division (ortholog); female pronucleus assembly (ortholog); negative regulation of cyclin-dependent protein serine/threonine kinase activity (ortholog); ASSOCIATED WITH Oocyte Maturation Defect 5 (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955494 1836909 1869384 - 102015022 AGCD01061424;GBDJ01283231;XM_013505022 XP_013360476 MODEL 8720751 ncrna LOC102028739 uncharacterized LOC102028739 NW_004955472 9866964 9882559 - 102028739 AGCD01053697;GBDF01254458;XR_001237075 MODEL 8866792 protein-coding LOC102027400 olfactory receptor 52E2-like NW_004955414 20655629 20656577 - 102027400 AGCD01015385;XM_013511760 XP_013367214 MODEL 8803955 protein-coding LOC102029142 fibroblast growth factor receptor 2-like NW_004955956 18 7699 - 102029142 AGCD01078744;GBDK01070742;XM_013510209;XM_013510210 XP_013365663;XP_013365664 MODEL 8964783 protein-coding Rbpms RNA binding protein, mRNA processing factor ENCODES a protein that exhibits identical protein binding (ortholog); molecular adaptor activity (ortholog); mRNA 3'-UTR binding (ortholog); INVOLVED IN protein-containing complex assembly (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); response to oxidative stress (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955463 6817570 6973393 + 102008510 AGCD01049706;AGCD01049707;AGCD01049708;AGCD01049709;GBCQ01000539;GBDI01292820;XM_005398470 XP_005398527 MODEL 8788869 protein-coding Rap1a RAP1A, member of RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cellular response to cAMP (ortholog); cellular response to forskolin (ortholog); PARTICIPATES IN adenosine signaling pathway; E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Hyperoxaluria (ortholog); Myocardial Reperfusion Injury (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); dense core granule (ortholog) NW_004955435 15090521 15171397 + 102028125 AGCD01033262;GBCQ01034816;XM_005388951;XM_013516528;XM_013516529 XP_005389008;XP_013371982;XP_013371983 MODEL 8933622 protein-coding Sema3g semaphorin 3G ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN negative regulation of axon extension (ortholog) NW_004955430 2409847 2433001 - 102016080 AGCD01029165;AGCD01029166;GBDK01008724;XM_005387316;XM_005387318 XP_005387373;XP_005387375 MODEL 9041456 protein-coding Rab23 RAB23, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GTPase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); cellular defense response (ortholog); cilium assembly (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); Carpenter syndrome (ortholog); Carpenter syndrome 1 (ortholog); FOUND IN autophagosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955502 2947170 2980634 + 102026236 AGCD01064306;AGCD01064307;GBBH01102042;XM_005406882 XP_005406939 MODEL 39134512 ribozyme RNaseP_nuc Nuclear RNase P 8923945 protein-coding LOC102011292 translation initiation factor IF-2-like NW_004955411 5098018 5101336 - 102011292 AGCD01011594;GBDF01039872;XM_005377923 XP_005377980 MODEL 8707171 pseudo LOC102007137 glucose-6-phosphatase 3 pseudogene NW_004955503 444692 461910 + 102007137 AGCD01064504 MODEL 8815066 protein-coding Prx periaxin INVOLVED IN axon ensheathment (ortholog); nerve development (ortholog); peripheral nervous system myelin formation (ortholog); ASSOCIATED WITH cataract (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 1 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955578 852789 873319 + 102013026 AGCD01075500;GBDI01262384;XM_005414047;XM_005414049;XM_005414050;XM_005414051;XM_005414053;XM_005414054;XM_013509650;XM_013509651;XM_013509652 XP_005414104;XP_005414106;XP_005414107;XP_005414108;XP_005414110;XP_005414111;XP_013365104;XP_013365105;XP_013365106 MODEL 9001664 protein-coding Pecam1 platelet and endothelial cell adhesion molecule 1 ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein phosphatase binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN angiogenesis (ortholog); bicellular tight junction assembly (ortholog); cell adhesion (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Acute Lung Injury (ortholog); atherosclerosis (ortholog); FOUND IN anchoring junction (ortholog); cell periphery (ortholog); cell surface (ortholog) NW_004955478 7448584 7531860 + 102014777 AGCD01055964;AGCD01055965;AGCD01055966;AGCD01055967;AGCD01055968;AGCD01055969;AGCD01055970;AGCD01055971;AGCD01055972;AGCD01055973;AGCD01055974;AGCD01055975;GBCQ01033991;XM_005402168;XM_013503222;XM_013503223;XM_013503224 XP_005402225;XP_013358676;XP_013358677;XP_013358678 MODEL 10218039 ncrna LOC106149998 uncharacterized LOC106149998 NW_004955460 9778126 9783630 - 106149998 AGCD01048551;XR_001236508 MODEL 9023157 pseudo LOC102026054 asparagine synthetase domain-containing protein 1 pseudogene NW_004955447 652287 654813 + 102026054 AGCD01040478 MODEL 8920904 protein-coding Pclo piccolo presynaptic cytomatrix protein ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); profilin binding (ortholog); INVOLVED IN cytoskeleton organization (ortholog); insulin secretion (ortholog); modulation of excitatory postsynaptic potential (ortholog); ASSOCIATED WITH genetic disease (ortholog); microcephaly (ortholog); pontocerebellar hypoplasia type 3 (ortholog); FOUND IN axon (ortholog); cone cell pedicle (ortholog); cytoskeleton of presynaptic active zone (ortholog) NW_004955410 2998345 3334056 + 102013914 AGCD01010638;AGCD01010639;AGCD01010640;AGCD01010641;AGCD01010642;AGCD01010643;AGCD01010644;AGCD01010645;AGCD01010646;GBDF01252702;GBDF01252704;XM_013510507 XP_013365961 MODEL 8782097 ncrna LOC102011776 uncharacterized LOC102011776 NW_004955421 24690889 24718021 + 102011776 AGCD01022221;GBDF01281561;XR_260824 MODEL 8851566 protein-coding LOC102010542 toll-like receptor 12 NW_004955452 11635179 11638291 + 102010542 AGCD01044342;GBDK01385301;XM_013519712 XP_013375166 MODEL 8794965 protein-coding Traf4 TNF receptor associated factor 4 ENCODES a protein that exhibits identical protein binding (ortholog); protein kinase binding (ortholog); thioesterase binding (ortholog); INVOLVED IN positive regulation of JNK cascade (ortholog); positive regulation of protein kinase activity (ortholog); respiratory gaseous exchange by respiratory system (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); lung adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); fibrillar center (ortholog) NW_004955481 4410906 4417553 - 102021125 AGCD01056936;AGCD01056937;GBBH01119444;GBDJ01179774;XM_005402714 XP_005402771 MODEL 8787980 protein-coding Slc8b1 solute carrier family 8 member B1 ENCODES a protein that exhibits calcium:sodium antiporter activity (ortholog); calcium:sodium antiporter activity involved in regulation of cardiac muscle cell membrane potential (ortholog); identical protein binding (ortholog); INVOLVED IN calcium export from the mitochondrion (ortholog); calcium ion transmembrane transport (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Cerebral Hemorrhage (ortholog); FOUND IN mitochondrial crista (ortholog); mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog) NW_004955482 9594872 9617136 - 102017019 AGCD01057574;GBBH01102174;XM_013503592;XM_013503593;XM_013503594 XP_013359046;XP_013359047;XP_013359048 MODEL 15036839 trna Trnac-aca transfer RNA cysteine (anticodon ACA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978832 8769202 pseudo LOC102018962 protein RUFY3 pseudogene NW_004955432 5057988 5059354 + 102018962 AGCD01030757 MODEL 8924130 protein-coding Tiprl TOR signaling pathway regulator ENCODES a protein that exhibits protein phosphatase inhibitor activity (ortholog); INVOLVED IN DNA damage checkpoint signaling (ortholog) NW_004955462 8921678 8939785 - 102018696 AGCD01049331;GBDF01003611;XM_005398209;XM_005398210;XM_005398213 XP_005398266;XP_005398267;XP_005398270 MODEL 8728701 pseudo LOC102030547 40S ribosomal protein S12 pseudogene NW_004955496 6630473 6630859 + 102030547 AGCD01062368;XM_005406286 MODEL 8728334 ncrna LOC102010919 uncharacterized LOC102010919 NW_004955424 15047979 15112987 + 102010919 AGCD01024683;AGCD01024684;AGCD01024685;AGCD01024686;AGCD01024687;AGCD01024688;AGCD01024689;GBBH01137283;XR_001234214;XR_001234215;XR_001234216;XR_001234217;XR_001234218;XR_001234219;XR_001234220;XR_001234221;XR_001234222;XR_001234223 MODEL 10088563 ncrna LOC106148254 uncharacterized LOC106148254 NW_004955418 5093795 5096341 - 106148254 AGCD01018838;GBDF01081630;XR_001233532 MODEL 8987477 ncrna LOC102006774 uncharacterized LOC102006774 NW_004955482 2917132 2929375 + 102006774 AGCD01057257;GBDF01076956;XR_263823 MODEL 8945015 protein-coding LOC102003903 ADP-ribosylation factor-like protein 4A NW_004955436 16294434 16295575 - 102003903 AGCD01033912;GBDF01008117;XM_005389238 XP_005389295 MODEL 9054408 protein-coding LOC102017831 protocadherin alpha-4-like NW_004955611 288464 291968 + 102017831 AGCD01077159;XM_013510123 XP_013365577 MODEL 8974497 pseudo LOC102027403 guanine nucleotide-binding protein subunit beta-2-like 1 pseudogene NW_004955475 9003454 9004440 + 102027403 AGCD01055054;XR_263614 MODEL 9066134 ncrna LOC102005685 uncharacterized LOC102005685 NW_004955412 2045158 2062851 - 102005685 AGCD01012534;GBDF01262267;XR_259966 MODEL 8843225 protein-coding Sorl1 sortilin related receptor 1 ENCODES a protein that exhibits amyloid-beta binding (ortholog); aspartic-type endopeptidase inhibitor activity (ortholog); cargo receptor activity (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); cell migration (ortholog); diet induced thermogenesis (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Alzheimer's disease 9 (ortholog); atrial fibrillation (ortholog); FOUND IN cell surface (ortholog); early endosome (ortholog); early endosome membrane (ortholog) NW_004955412 22421984 22576179 + 102015704 AGCD01013047;AGCD01013048;AGCD01013049;AGCD01013050;AGCD01013051;AGCD01013052;GBBH01091931;XM_005378364 XP_005378421 MODEL 39131711 snorna SNORA71 Small nucleolar RNA SNORA71 8967431 protein-coding Epas1 endothelial PAS domain protein 1 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); cobalt ion binding (ortholog); DNA binding (ortholog); INVOLVED IN angiogenesis (ortholog); blood vessel remodeling (ortholog); cell differentiation (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH acute kidney failure (ortholog); azoospermia (ortholog); Brain Injuries (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955441 13244626 13328220 + 102011250 AGCD01037146;AGCD01037147;AGCD01037148;GBBH01002906;XM_005390973 XP_005391030 MODEL 8711720 ncrna LOC102023612 uncharacterized LOC102023612 NW_004955493 7795315 7798040 - 102023612 AGCD01061227;GBDF01039121;XR_001231264 MODEL 8813819 protein-coding LOC102021887 zinc finger protein 26-like NW_004955495 970228 1001874 - 102021887 AGCD01061663;GBCQ01059108;XM_013505065;XM_013505066;XM_013505067;XM_013505068;XM_013505069;XM_013505070 XP_013360519;XP_013360520;XP_013360521;XP_013360522;XP_013360523;XP_013360524 MODEL 8787737 ncrna LOC102008635 uncharacterized LOC102008635 NW_004955493 5964146 5970478 + 102008635 AGCD01061081;GBBH01168010;XR_264086 MODEL 8961610 protein-coding LOC102024596 olfactory receptor 4C11-like NW_004955511 318058 318990 + 102024596 AGCD01066327;XM_005407940 XP_005407997 MODEL 8805275 protein-coding LOC102019365 A-kinase anchor protein 5-like NW_004955408 12165200 12166481 + 102019365 AGCD01008329;XM_013508842 XP_013364296 MODEL 8962580 protein-coding Plk2 polo like kinase 2 ENCODES a protein that exhibits ATP-dependent protein binding (ortholog); ATPase binding (ortholog); clathrin heavy chain binding (ortholog); INVOLVED IN G1/S transition of mitotic cell cycle (ortholog); long-term synaptic depression (ortholog); long-term synaptic potentiation (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Drug-Related Side Effects and Adverse Reactions (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); chromatin (ortholog) NW_004955446 9671090 9676956 + 102008994 AGCD01040162;GBDF01005861;XM_005392671 XP_005392728 MODEL 8864402 protein-coding C1galt1c1l C1GALT1 specific chaperone 1 like NW_004955441 10846009 10847263 - 102024854 AGCD01037095;GBDI01279325;XM_005390923 XP_005390980 MODEL 8849840 protein-coding Prkcz protein kinase C zeta ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); calcium,diacylglycerol-dependent serine/threonine kinase activity (ortholog); insulin receptor substrate binding (ortholog); INVOLVED IN activation of protein kinase B activity (ortholog); cell migration (ortholog); cell surface receptor signaling pathway (ortholog); PARTICIPATES IN adenosine signaling pathway; angiotensin II signaling pathway; ceramide signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Cardiomegaly (ortholog); Hyperalgesia (ortholog); FOUND IN anchoring junction (ortholog); apical cortex (ortholog); apical plasma membrane (ortholog) NW_004955486 8947579 9021702 - 102009845 AGCD01059158;GBBH01064694;GBCE01055776;XM_005404177;XM_013504279 XP_005404234;XP_013359733 MODEL 9047660 protein-coding Wfdc1 WAP four-disulfide core domain 1 INVOLVED IN negative regulation of epithelial cell proliferation (ortholog); negative regulation of inflammatory response (ortholog); negative regulation of wound healing (ortholog); ASSOCIATED WITH COVID-19 (ortholog); melanoma (ortholog); prostate cancer (ortholog); FOUND IN extracellular region (ortholog) NW_004955564 22536 38091 - 102017517 AGCD01074187;GBDK01412209;XM_005413214;XM_005413215;XM_013509194;XM_013509195 XP_005413271;XP_005413272;XP_013364648;XP_013364649 MODEL 8733562 protein-coding LOC102009757 ubiquinol-cytochrome-c reductase complex assembly factor 2 INVOLVED IN mitochondrial respiratory chain complex III assembly (ortholog); positive regulation of mitochondrial translation (ortholog); regulation of insulin secretion (ortholog); ASSOCIATED WITH mitochondrial complex III deficiency nuclear type 1 (ortholog); mitochondrial complex III deficiency nuclear type 7 (ortholog); FOUND IN Cbp3p-Cbp6 complex (ortholog); mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog) NW_004955437 2107475 2119892 - 102009757 AGCD01034260;GBDF01065831;XM_005389507 XP_005389564 MODEL 10253419 protein-coding LOC106147160 uncharacterized LOC106147160 NW_004955524 1216167 1224898 - 106147160 AGCD01068739;GBDF01005774;XM_013507188 XP_013362642 MODEL 8770802 protein-coding LOC102029152 ral guanine nucleotide dissociation stimulator-like NW_004955407 38524155 38526508 + 102029152 AGCD01007808;GBDF01084229;XM_005375780;XM_005375781 XP_005375837;XP_005375838 MODEL 8872046 protein-coding Slc24a1 solute carrier family 24 member 1 ENCODES a protein that exhibits calcium, potassium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); intracellular calcium ion homeostasis (ortholog); potassium ion transmembrane transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; visual phototransduction pathway; ASSOCIATED WITH Cerebral Hemorrhage (ortholog); congenital stationary night blindness (ortholog); congenital stationary night blindness 1D (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955450 9850170 9881172 - 102005093 AGCD01042600;GBBH01101110;XM_005393714;XM_005393715;XM_005393716;XM_013518968;XM_013518969 XP_005393771;XP_005393772;XP_005393773;XP_013374422;XP_013374423 MODEL 8964156 protein-coding Ppp1r1a protein phosphatase 1 regulatory inhibitor subunit 1A ASSOCIATED WITH Cardiac Arrhythmias (ortholog); cardiomyopathy (ortholog); congestive heart failure (ortholog); FOUND IN extracellular region (ortholog) NW_004955458 1819366 1823864 - 102013478 AGCD01047205;GBCQ01008716;GBDI01013591;XM_013520994 XP_013376448 MODEL 8912148 protein-coding Sema4a semaphorin 4A INVOLVED IN axonogenesis (ortholog); negative regulation of angiogenesis (ortholog); positive regulation of excitatory synapse assembly (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Colonic Polyps (ortholog); colorectal cancer (ortholog); FOUND IN plasma membrane (ortholog) NW_004955545 2316402 2341873 + 102020845 AGCD01071895;AGCD01071896;AGCD01071897;GBDI01084803;XM_005411654;XM_005411655;XM_005411656 XP_005411711;XP_005411712;XP_005411713 MODEL 9017723 ncrna LOC102015931 uncharacterized LOC102015931 NW_004955409 36421675 36465609 + 102015931 AGCD01010459;AGCD01010460;AGCD01010461;AGCD01010462;GBCQ01158580;XR_259807 MODEL 8778783 protein-coding LOC102026415 taste receptor type 2 member 14-like NW_004955413 8261001 8261963 + 102026415 AGCD01013858;XM_013511297 XP_013366751 MODEL 8719523 protein-coding Rab24 RAB24, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); autophagy (ortholog); meiotic nuclear division (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); colorectal adenocarcinoma (ortholog); FOUND IN autophagosome (ortholog); autophagosome membrane (ortholog); cytoplasm (ortholog) NW_004955408 29548839 29551184 - 102023117 AGCD01008762;GBCB01023942;XM_005376424 XP_005376481 MODEL 9044410 protein-coding Sms spermine synthase ENCODES a protein that exhibits spermine synthase activity (ortholog); INVOLVED IN spermine biosynthetic process (ortholog); spermine metabolic process (ortholog); PARTICIPATES IN methionine cycle/metabolic pathway; polyamine metabolic pathway; spermidine metabolic pathway; ASSOCIATED WITH anxiety disorder (ortholog); Developmental Disease (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog) NW_004955509 2277501 2328612 + 102011787 AGCD01065995;AGCD01065996;AGCD01065997;GBDF01088292;XM_005407826 XP_005407883 MODEL 9030958 protein-coding Sack1g scaffolding CK1 anchoring protein G INVOLVED IN BMP signaling pathway (ortholog); ASSOCIATED WITH palmoplantar keratosis (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955467 594921 623661 + 102005018 AGCD01051226;AGCD01051227;GBDK01060112;XM_005399278;XM_013522189 XP_005399335;XP_013377643 MODEL 8712453 protein-coding Prxl2a peroxiredoxin like 2A ENCODES a protein that exhibits antioxidant activity (ortholog); INVOLVED IN regulation of osteoclast differentiation (ortholog); FOUND IN cytoplasm (ortholog) NW_004955510 400454 420900 + 102027556 AGCD01066147;AGCD01066148;GBDJ01064130;XM_005407871;XM_005407872;XM_005407873;XM_013506334;XM_013506335 XP_005407928;XP_005407929;XP_005407930;XP_013361788;XP_013361789 MODEL 8830965 protein-coding LOC102026055 olfactory receptor 2C3-like NW_004955581 767883 769067 - 102026055 AGCD01075693;XM_005414269 XP_005414326 MODEL 9016007 protein-coding Sfxn1 sideroflexin 1 ENCODES a protein that exhibits L-alanine transmembrane transporter activity (ortholog); L-serine transmembrane transporter activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); iron ion transport (ortholog); L-alanine transport (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Colorectal Neoplasms (ortholog); lung adenocarcinoma (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955408 28054211 28105294 + 102006545 AGCD01008703;AGCD01008704;AGCD01008705;AGCD01008706;AGCD01008707;GBDK01358301;XM_005376362;XM_013509460 XP_005376419;XP_013364914 MODEL 8964912 pseudo LOC102011785 protein BEX3-like NW_004955425 1246748 1250299 + 102011785 AGCD01025219 MODEL 9037357 ncrna LOC102028087 uncharacterized LOC102028087 NW_004955418 10966 18075 + 102028087 AGCD01018663;GBDF01249599;XR_260526 MODEL 8755462 protein-coding Plk3 polo like kinase 3 ENCODES a protein that exhibits p53 binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cytoplasmic microtubule organization (ortholog); DNA damage response (ortholog); G1/S transition of mitotic cell cycle (ortholog); ASSOCIATED WITH breast carcinoma (ortholog); COVID-19 (ortholog); ovary epithelial cancer (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955464 13419562 13424104 - 102006642 AGCD01050275;GBBH01135021;GBCE01163140;XM_013521627;XM_013521628 XP_013377081;XP_013377082 MODEL 8922235 protein-coding LOC102012918 atherin-like NW_004955452 3351568 3354575 - 102012918 AGCD01043921;GBDF01123090;XM_005394752;XM_013519519 XP_005394809;XP_013374973 MODEL 8941559 protein-coding Rbpms2 RNA binding protein, mRNA processing factor 2 ENCODES a protein that exhibits identical protein binding (ortholog); mRNA binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN negative regulation of smooth muscle cell differentiation (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955450 10746708 10770540 + 102009670 AGCD01042634;AGCD01042635;GBCB01088798;XM_013518834 XP_013374288 MODEL 8763459 protein-coding Ptpmt1 protein tyrosine phosphatase mitochondrial 1 ENCODES a protein that exhibits phosphatidylglycerophosphatase activity (ortholog); phosphatidylinositol-5-phosphate phosphatase activity (ortholog); INVOLVED IN cardiolipin biosynthetic process (ortholog); mitochondrial fragmentation involved in apoptotic process (ortholog); negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); PARTICIPATES IN cardiolipin biosynthetic pathway; glycerophospholipid metabolic pathway; inositol metabolic pathway; ASSOCIATED WITH Neurodevelopmental disorder with ataxia and brain abnormalities (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955422 723236 724761 - 102007132 AGCD01022432;GBBH01076389;GBCQ01018067;XM_005384942 XP_005384999 MODEL 8804840 protein-coding Rap1b RAP1B, member of RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cell population proliferation (ortholog); cellular response to cAMP (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; platelet-derived growth factor signaling pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); Thrombocytopenia 11 (ortholog); FOUND IN anchoring junction (ortholog); cell-cell junction (ortholog); cytosol (ortholog) NW_004955458 15110709 15121868 + 102005445 AGCD01047864;GBDK01005189;XM_013520897 XP_013376351 MODEL 8752125 pseudo LOC102030552 E3 ubiquitin-protein ligase RING2 pseudogene NW_004955505 501877 502880 + 102030552 AGCD01064959 MODEL 8756689 ncrna LOC102003910 uncharacterized LOC102003910 NW_004955547 2449218 2452224 + 102003910 AGCD01072281;GBDF01261280;XR_001232226;XR_001232227;XR_264909 MODEL 8861374 pseudo LOC102006775 tRNA methyltransferase 10 homolog A pseudogene NW_004955418 23030539 23031447 + 102006775 AGCD01019297 MODEL 39134225 ribozyme RNaseP_nuc Nuclear RNase P 39133486 snrna U4 U4 spliceosomal RNA 9064995 protein-coding Lmf2 lipase maturation factor 2 NW_004955413 33487970 33492033 - 102003532 AGCD01014672;GBDK01128390;XM_005379576 XP_005379633 MODEL 8708842 protein-coding Pecr peroxisomal trans-2-enoyl-CoA reductase ENCODES a protein that exhibits 2,4-dienoyl-CoA reductase (NADPH) activity (ortholog); signaling receptor binding (ortholog); trans-2-enoyl-CoA reductase (NADPH) activity (ortholog); INVOLVED IN phytol metabolic process (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN mitochondrion (ortholog); peroxisome (ortholog) NW_004955453 17059779 17109531 + 102025651 AGCD01044917;AGCD01044918;GBDF01081665;XM_005395692;XM_013519993 XP_005395749;XP_013375447 MODEL 9054629 protein-coding Sort1 sortilin 1 ENCODES a protein that exhibits cargo receptor activity (ortholog); enzyme binding (ortholog); nerve growth factor binding (ortholog); INVOLVED IN endocytosis (ortholog); endosome to lysosome transport (ortholog); endosome transport via multivesicular body sorting pathway (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); cardiovascular system disease (ortholog); cholestasis (ortholog); FOUND IN cell surface (ortholog); cerebellar climbing fiber to Purkinje cell synapse (ortholog); clathrin-coated pit (ortholog) NW_004955435 12725952 12819280 - 102026666 AGCD01033163;AGCD01033164;AGCD01033165;AGCD01033166;AGCD01033167;GBBH01142331;GBCQ01063656;XM_013516443;XM_013516444 XP_013371897;XP_013371898 MODEL 10208793 ncrna LOC106149999 uncharacterized LOC106149999 NW_004955460 10259974 10263661 - 106149999 AGCD01048576;GBCE01142022;XR_001236509 MODEL 9023914 ncrna LOC102028741 uncharacterized LOC102028741 NW_004955475 3406770 3419988 + 102028741 AGCD01054841;GBDJ01304656;XR_001230768 MODEL 8903392 protein-coding LOC102008637 C-type lectin domain family 2 member L NW_004955494 3562862 3573552 - 102008637 AGCD01061476;AGCD01061477;GBCE01072603;GBCQ01101254;XM_013504909 XP_013360363 MODEL 8721359 protein-coding Pcm1 pericentriolar material 1 ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN centrosome cycle (ortholog); cilium assembly (ortholog); cytoplasmic microtubule organization (ortholog); ASSOCIATED WITH schizophrenia (ortholog); Thyroid Carcinoma, Nonmedullary 1 (ortholog); FOUND IN apical part of cell (ortholog); centriolar satellite (ortholog); centriole (ortholog) NW_004955552 1675477 1768902 - 102020848 AGCD01072784;AGCD01072785;AGCD01072786;AGCD01072787;GBDF01001895;XM_005412193;XM_005412194;XM_005412195;XM_005412196;XM_005412197;XM_005412198;XM_013508598;XM_013508599;XM_013508600;XM_013508601 XP_005412250;XP_005412251;XP_005412252;XP_005412253;XP_005412254;XP_005412255;XP_013364052;XP_013364053;XP_013364054;XP_013364055 MODEL 8778194 protein-coding Rgs5 regulator of G protein signaling 5 INVOLVED IN negative regulation of vascular associated smooth muscle cell proliferation (ortholog); PARTICIPATES IN calcium signaling pathway via the calcium-sensing receptor; G protein mediated signaling pathway via Galphai family; G protein mediated signaling pathway via Galphaq family; ASSOCIATED WITH colorectal adenocarcinoma (ortholog); essential hypertension (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955462 13228110 13288063 + 102008706 AGCD01049422;AGCD01049423;GBDF01305569;XM_005398257;XM_005398258 XP_005398314;XP_005398315 MODEL 8874925 protein-coding LOC102018966 zinc finger protein 124-like NW_004955524 346998 358842 - 102018966 AGCD01068675;XM_005409478 XP_005409535 MODEL 8949222 trna Trnac-gca transfer RNA cysteine (anticodon GCA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978833 AGCD01043512;AGCD01043513;AGCD01043523;AGCD01057606;AGCD01060445;AGCD01060446;AGCD01060454;AGCD01060455;AGCD01060458;AGCD01060459;AGCD01060460;AGCD01060462;AGCD01064185;AGCD01079692;AGCD01079693;AGCD01079767;AGCD01079768 MODEL 9013323 ncrna LOC102010922 uncharacterized LOC102010922 NW_004955425 2114106 2208490 - 102010922 AGCD01025251;AGCD01025252;AGCD01025253;AGCD01025254;AGCD01025255;GBDF01075868;XR_001234279;XR_001234280;XR_001234281;XR_001234282;XR_001234283 MODEL 8959976 protein-coding Sack1h scaffolding CK1 anchoring protein H ENCODES a protein that exhibits keratin filament binding (ortholog); protein kinase binding (ortholog); INVOLVED IN intermediate filament cytoskeleton organization (ortholog); positive regulation of cell migration (ortholog); protein localization to cytoskeleton (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 3 (ortholog); amelogenesis imperfecta type 3A (ortholog); FOUND IN cytoplasm (ortholog); keratin filament (ortholog) NW_004955454 2421393 2436012 - 102012607 AGCD01045020;AGCD01045021;GBCE01152697;XM_005395808;XM_005395810;XM_005395811;XM_013520054 XP_005395865;XP_005395867;XP_005395868;XP_013375508 MODEL 8941477 protein-coding Tirap TIR domain containing adaptor protein ENCODES a protein that exhibits identical protein binding (ortholog); molecular adaptor activity (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA stabilization (ortholog); cell surface receptor signaling pathway (ortholog); cellular response to bacterial lipopeptide (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH Bacteremia (ortholog); Immunodeficiency 67 (ortholog); malaria (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); endocytic vesicle (ortholog) NW_004955412 27303548 27315031 + 102004684 AGCD01013233;GBCE01142482;XM_005378502 XP_005378559 MODEL 10240839 ncrna LOC106148255 uncharacterized LOC106148255 NW_004955403 23844516 23848923 - 106148255 AGCD01002260;GBDF01153486;XR_001233533 MODEL 10252596 protein-coding LOC106147161 translation initiation factor IF-2-like NW_004955524 1360928 1361851 - 106147161 AGCD01068748;AGCD01068749;GBBH01073899;GBDF01057450;XM_013507189 XP_013362643 MODEL 8947631 pseudo LOC102017837 uncharacterized LOC102017837 NW_004955404 7713697 7732135 - 102017837 AGCD01003342 MODEL 8754794 ncrna LOC102005686 uncharacterized LOC102005686 NW_004955465 6940344 6948806 - 102005686 AGCD01050449;GBCB01122620;XR_263246 MODEL 8727472 protein-coding LOC102009764 keratin, type II cytoskeletal 75 NW_004955547 2773524 2784448 - 102009764 AGCD01072294;GBCB01107480;XM_005411943 XP_005412000 MODEL 39131712 snorna SNORA71 Small nucleolar RNA SNORA71 8787441 protein-coding Slc24a2 solute carrier family 24 member 2 ENCODES a protein that exhibits calcium channel activity (ortholog); calcium, potassium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion import (ortholog); calcium ion import across plasma membrane (ortholog); calcium ion transmembrane transport (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; visual phototransduction pathway; FOUND IN membrane (ortholog); plasma membrane (ortholog); postsynapse (ortholog) NW_004955434 21871319 22091125 - 102028225 AGCD01032658;AGCD01032659;AGCD01032660;GBCB01100094;GBCQ01087320;XM_013516390 XP_013371844 MODEL 8818553 pseudo LOC102007145 zinc finger protein OZF-like NW_004955431 11381806 11382456 + 102007145 AGCD01030233 MODEL 8810937 ncrna LOC102024597 uncharacterized LOC102024597 NW_004955511 2796192 2798196 + 102024597 AGCD01066428;GBDF01194807;XR_264420 MODEL 8742485 ncrna LOC102021888 uncharacterized LOC102021888 NW_004955423 16031061 16038434 + 102021888 AGCD01023823;GBDF01148255;XR_260972 MODEL 8929279 pseudo LOC102010543 ferritin light chain pseudogene NW_004955405 19953476 19961761 - 102010543 AGCD01005050 MODEL 8816883 protein-coding Epb41 erythrocyte membrane protein band 4.1 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); actin binding (ortholog); phosphoprotein binding (ortholog); INVOLVED IN positive regulation of protein localization to cell cortex (ortholog); protein-containing complex assembly (ortholog); regulation of calcium ion transport (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH Elliptocytosis 1 (ortholog); genetic disease (ortholog); hemolytic anemia (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell cortex (ortholog); cortical cytoskeleton (ortholog) NW_004955452 7930095 8123165 + 102021512 AGCD01044202;AGCD01044203;AGCD01044204;AGCD01044205;AGCD01044206;AGCD01044207;AGCD01044208;AGCD01044209;GBBH01033044;XM_005394970;XM_013519473;XM_013519474;XM_013519475;XM_013519476;XM_013519477;XM_013519478 XP_005395027;XP_013374927;XP_013374928;XP_013374929;XP_013374930;XP_013374931;XP_013374932 MODEL 8758638 pseudo LOC102026419 olfactory receptor 52E2-like NW_004955414 20570666 20571356 - 102026419 AGCD01015380 MODEL 8911733 protein-coding Slc9a1 solute carrier family 9 member A1 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN cardiac muscle cell contraction (ortholog); cardiac muscle cell differentiation (ortholog); cell differentiation (ortholog); PARTICIPATES IN endothelin signaling pathway; ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 19 (ortholog); Barrett's esophagus (ortholog); Brain Hypoxia-Ischemia (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cation-transporting ATPase complex (ortholog) NW_004955452 6409833 6467841 - 102028491 AGCD01044109;AGCD01044110;AGCD01044111;GBDJ01128349;XM_005394895 XP_005394952 MODEL 39131316 protein-coding WFDC1 WAP four-disulfide core domain 1 9016154 protein-coding Prkd1 protein kinase D1 ENCODES a protein that exhibits diacylglycerol-dependent serine/threonine kinase activity (ortholog); heat shock protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to angiotensin (ortholog); cellular response to endothelin (ortholog); PARTICIPATES IN insulin-like growth factor signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Cardiac Fibrosis (ortholog); Cardiomegaly (ortholog); FOUND IN autophagosome membrane (ortholog); cell cortex (ortholog); cell-cell junction (ortholog) NW_004955409 30554095 30860588 + 102017202 AGCD01010303;AGCD01010304;AGCD01010305;AGCD01010306;GBDJ01386770;XM_013510389;XM_013510390 XP_013365843;XP_013365844 MODEL 9064101 protein-coding Lmln leishmanolysin like peptidase ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lipid droplet (ortholog) NW_004955420 11867034 11953303 - 102026643 AGCD01020841;AGCD01020842;AGCD01020843;AGCD01020844;AGCD01020845;AGCD01020846;AGCD01020847;AGCD01020848;GBCE01119901;GBCQ01076834;XM_013513591 XP_013369045 MODEL 8972892 protein-coding Prxl2b peroxiredoxin like 2B ENCODES a protein that exhibits oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor (ortholog); prostaglandin F synthase activity (ortholog); prostaglandin H2 endoperoxidase reductase activity (ortholog); INVOLVED IN cyclooxygenase pathway (ortholog); prostaglandin biosynthetic process (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH pneumoconiosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955486 8663708 8666369 - 102004825 AGCD01059153;GBBH01145866;XM_005404161 XP_005404218 MODEL 8969855 pseudo LOC102028089 TCDD-inducible poly [ADP-ribose] polymerase pseudogene NW_004955483 1033886 1036661 + 102028089 AGCD01057639 MODEL 9048300 ncrna LOC102029156 uncharacterized LOC102029156 NW_004955462 10361592 10390186 - 102029156 AGCD01049365;GBCQ01067630;XR_001236591 MODEL 8896821 protein-coding LOC102027409 cytosolic beta-glucosidase NW_004955480 2034112 2148100 - 102027409 AGCD01056604;AGCD01056605;GBDF01095455;XM_013503306;XM_013503307 XP_013358760;XP_013358761 MODEL 10220772 pseudo LOC102011300 Ig heavy chain V-I region 5-like NW_004955470 472783 473374 - 102011300 AGCD01052614 MODEL 8951897 protein-coding Ptpn1 protein tyrosine phosphatase non-receptor type 1 ENCODES a protein that exhibits enzyme binding (ortholog); ephrin receptor binding (ortholog); insulin receptor binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cellular response to angiotensin (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; insulin signaling pathway; insulin-like growth factor signaling pathway; ASSOCIATED WITH B-cell lymphoma (ortholog); Calcification of Aortic Valve (ortholog); Carotid Artery Injuries (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of endoplasmic reticulum membrane (ortholog); early endosome (ortholog) NW_004955445 7754313 7819229 - 102025630 AGCD01039551;AGCD01039552;GBDF01190580;XM_005392314;XM_005392315;XM_005392316 XP_005392371;XP_005392372;XP_005392373 MODEL 9002490 ncrna LOC102019366 uncharacterized LOC102019366 NW_004955460 4440981 4449248 + 102019366 AGCD01048434;AGCD01048435;GBDF01155457;XR_263027 MODEL 9025581 protein-coding Rap1gap RAP1 GTPase activating protein ENCODES a protein that exhibits GTPase activator activity (ortholog); protein homodimerization activity (ortholog); small GTPase binding (ortholog); INVOLVED IN cellular response to glial cell derived neurotrophic factor (ortholog); negative regulation of microvillus assembly (ortholog); negative regulation of neuron differentiation (ortholog); ASSOCIATED WITH acute promyelocytic leukemia (ortholog); bipolar disorder (ortholog); Disease Progression (ortholog); FOUND IN axon (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955452 1886557 1950942 - 102029817 AGCD01043869;AGCD01043870;GBDI01071245;XM_013519605;XM_013519606;XM_013519607;XR_001236073;XR_001236074;XR_001236075;XR_001236076;XR_001236077;XR_001236078;XR_001236079;XR_001236080 XP_013375059;XP_013375060;XP_013375061 MODEL 9065566 pseudo LOC102030555 olfactory receptor 5D13-like NW_004955511 529677 530621 - 102030555 AGCD01066333 MODEL 8728093 pseudo LOC102003912 S-phase kinase-associated protein 1 pseudogene NW_004955442 6806797 6817973 + 102003912 AGCD01037597;AGCD01037598;AGCD01037599 MODEL 9047488 protein-coding Traf5 TNF receptor associated factor 5 ENCODES a protein that exhibits identical protein binding (ortholog); thioesterase binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN CD40 signaling pathway (ortholog); interleukin-17-mediated signaling pathway (ortholog); mRNA stabilization (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; FOUND IN CD40 receptor complex (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955489 935601 995162 - 102014056 AGCD01059824;GBCB01012256;XM_005404503;XR_001231193;XR_001231194 XP_005404560 MODEL 39131303 protein-coding C1orf56 chromosome 1 open reading frame 56 39134222 ribozyme RNaseP_nuc Nuclear RNase P 8740154 protein-coding Rab25 RAB25, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); myosin V binding (ortholog); INVOLVED IN epithelial cell morphogenesis (ortholog); positive regulation of cell population proliferation (ortholog); positive regulation of epithelial cell migration (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog); pseudopodium (ortholog) NW_004955545 2243237 2250507 + 102020487 AGCD01071891;GBDI01021690;XM_005411651;XM_013508333 XP_005411708;XP_013363787 MODEL 8903697 pseudo LOC102026058 60S ribosomal protein L7a pseudogene NW_004955449 10010072 10141311 + 102026058 AGCD01042064;AGCD01042065;AGCD01042066;AGCD01042067 MODEL 8904568 pseudo LOC102010545 COP9 signalosome complex subunit 8-like NW_004955406 37300353 37301399 - 102010545 AGCD01006573 MODEL 8914831 protein-coding Sfxn2 sideroflexin 2 INVOLVED IN mitochondrial transmembrane transport (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955485 7716916 7732122 - 102012098 AGCD01058672;GBCE01065073;XM_005403827;XM_005403828;XM_013504027;XM_013504028;XM_013504029;XM_013504030;XM_013504031;XM_013504033;XM_013504034;XM_013504035;XM_013504036;XR_001231068 XP_005403884;XP_005403885;XP_013359481;XP_013359482;XP_013359483;XP_013359484;XP_013359485;XP_013359487;XP_013359488;XP_013359489;XP_013359490 MODEL 8746305 pseudo LOC102011791 nuclear receptor-binding factor 2-like NW_004955512 4113871 4117507 - 102011791 AGCD01066729 MODEL 8837390 protein-coding Plk4 polo like kinase 4 ENCODES a protein that exhibits identical protein binding (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN centriole replication (ortholog); cilium assembly (ortholog); de novo centriole assembly involved in multi-ciliated epithelial cell differentiation (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); colon cancer (ortholog); diabetic retinopathy (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); deuterosome (ortholog) NW_004955428 13548485 13566786 - 102005492 AGCD01027958;AGCD01027959;GBDF01044579;XM_005386739 XP_005386796 MODEL 15036857 trna Trnad-auc transfer RNA aspartic acid (anticodon AUC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978828 8810433 protein-coding Rbsn rabenosyn, RAB effector ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); small GTPase binding (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); Golgi to lysosome transport (ortholog); regulation of Golgi organization (ortholog); ASSOCIATED WITH Kariminejad neurodevelopmental syndrome (ortholog); MYELOFIBROSIS, CONGENITAL, WITH ANEMIA, NEUTROPENIA, DEVELOPMENTAL DELAY, AND (ortholog); FOUND IN early endosome (ortholog); early endosome membrane (ortholog) NW_004955429 17444031 17468024 - 102009526 AGCD01028857;GBCB01108995;XM_005387075;XM_005387076;XM_005387077;XM_013515390;XM_013515391;XR_001234494 XP_005387132;XP_005387133;XP_005387134;XP_013370844;XP_013370845 MODEL 9055652 pseudo LOC102010929 transcriptional repressor protein YY1-like NW_004955429 4787838 4789119 - 102010929 AGCD01028496 MODEL 8963439 protein-coding Sema4b semaphorin 4B FOUND IN glutamatergic synapse (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955416 15107258 15143338 - 102014246 AGCD01017301;AGCD01017302;GBBH01034143;GBDJ01007563;XM_013512481;XM_013512482 XP_013367935;XP_013367936 MODEL 10071273 protein-coding LOC106147162 basic proline-rich protein-like NW_004955524 2754870 2755157 - 106147162 AGCD01068834;GBDJ01268040;XM_013507195 XP_013362649 MODEL 10390685 ncrna LOC106148256 uncharacterized LOC106148256 NW_004955418 29198169 29215329 + 106148256 AGCD01019455;GBCE01120607;XR_001233534 MODEL 8773909 protein-coding LOC102009769 olfactory receptor 7G2-like NW_004955563 256431 260592 + 102009769 AGCD01074056;AGCD01074057;XM_005413198 XP_005413255 MODEL 8792851 pseudo LOC102028744 splicing factor 45 pseudogene NW_004955475 10889704 10890935 - 102028744 AGCD01055124 MODEL 8881599 pseudo LOC102024598 serine/threonine-protein kinase PLK4-like NW_004955429 19408775 19420812 + 102024598 AGCD01028952 MODEL 8863689 protein-coding Smtn smoothelin INVOLVED IN negative regulation of systemic arterial blood pressure (ortholog); positive regulation of cardiac muscle contraction (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN actin cytoskeleton (ortholog); nucleoplasm (ortholog) NW_004955455 5271615 5294151 + 102030038 AGCD01045720;GBDF01050278;XM_005396291;XM_005396292;XM_005396293;XM_005396294 XP_005396348;XP_005396349;XP_005396350;XP_005396351 MODEL 8780190 ncrna LOC102019369 uncharacterized LOC102019369 NW_004955463 5190976 5203856 + 102019369 AGCD01049634;AGCD01049635;AGCD01049636;AGCD01049637;GBDF01125889;XR_263149;XR_263150 MODEL 8903369 protein-coding Pcmt1 protein-L-isoaspartate (D-aspartate) O-methyltransferase ENCODES a protein that exhibits protein-L-isoaspartate (D-aspartate) O-methyltransferase activity (ortholog); S-adenosylmethionine-dependent methyltransferase activity (ortholog); S-methyltransferase activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular response to pH (ortholog); negative regulation of cardiac muscle cell apoptotic process (ortholog); PARTICIPATES IN homocysteine metabolic pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Aortic Injuries (ortholog); congestive heart failure (ortholog); FOUND IN basolateral plasma membrane (ortholog); brush border membrane (ortholog); cytosol (ortholog) NW_004955439 11480094 11531842 - 102008460 AGCD01035910;AGCD01035911;AGCD01035912;GBDK01236603;XM_005390593;XM_005390594;XM_013517318;XR_261983;XR_261984 XP_005390650;XP_005390651;XP_013372772 MODEL 8721643 protein-coding Rgs6 regulator of G protein signaling 6 ENCODES a protein that exhibits GTPase activator activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN positive regulation of GTPase activity (ortholog); positive regulation of neuron differentiation (ortholog); PARTICIPATES IN acetylcholine signaling pathway via muscarinic acetylcholine receptor; ASSOCIATED WITH alcohol dependence (ortholog); morphine dependence (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955523 2763143 3366851 - 102004846 AGCD01068588;AGCD01068589;AGCD01068590;AGCD01068591;AGCD01068592;AGCD01068593;AGCD01068594;AGCD01068595;AGCD01068596;AGCD01068597;AGCD01068598;AGCD01068599;AGCD01068600;AGCD01068601;AGCD01068602;AGCD01068603;AGCD01068604;AGCD01068605;GBDJ01403741;XM_005409440;XM_005409442;XM_005409443;XM_013507178 XP_005409497;XP_005409499;XP_005409500;XP_013362632 MODEL 8716913 protein-coding LOC102018968 ubiquitin-conjugating enzyme E2 D2-like NW_004955525 1602357 1603209 - 102018968 AGCD01069046;GBDF01048294;XM_005409726;XR_001231960 XP_005409783 MODEL 8976129 protein-coding LOC102012925 myotubularin-related protein 3 NW_004955455 4120714 4264635 + 102012925 AGCD01045667;AGCD01045668;AGCD01045669;AGCD01045670;AGCD01045671;AGCD01045672;AGCD01045673;GBDF01118467;XM_005396228;XM_005396229;XM_005396230;XM_005396231;XM_005396232;XM_005396233;XM_005396234;XM_005396235;XM_005396237;XM_005396238;XM_005396239 XP_005396285;XP_005396286;XP_005396287;XP_005396288;XP_005396289;XP_005396290;XP_005396291;XP_005396292;XP_005396294;XP_005396295;XP_005396296 MODEL 9026647 protein-coding Epb41l1 erythrocyte membrane protein band 4.1 like 1 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN regulation of exocytic insertion of neurotransmitter receptor to postsynaptic membrane (ortholog); ASSOCIATED WITH autosomal dominant intellectual developmental disorder 11 (ortholog); developmental and epileptic encephalopathy 11 (ortholog); intellectual disability (ortholog); FOUND IN parallel fiber to Purkinje cell synapse (ortholog); plasma membrane (ortholog); postsynapse (ortholog) NW_004955422 25338135 25456376 - 102028431 AGCD01023248;AGCD01023249;AGCD01023250;GBCE01186960;XM_005384755;XM_005384756;XM_005384758;XM_005384760;XM_013514214;XM_013514215;XM_013514216 XP_005384812;XP_005384813;XP_005384815;XP_005384817;XP_013369668;XP_013369669;XP_013369670 MODEL 8776744 protein-coding LOC102023613 taste receptor type 2 member 41-like NW_004955494 115686 185165 - 102023613 AGCD01061355;AGCD01061356;AGCD01061357;AGCD01061358;AGCD01061359;AGCD01061360;AGCD01061361;AGCD01061362;AGCD01061363;AGCD01061364;AGCD01061365;AGCD01061366;AGCD01061367;AGCD01061368;GBDF01288832;XM_013504913 XP_013360367 MODEL 8818861 protein-coding Ppp1r1b protein phosphatase 1 regulatory inhibitor subunit 1B ENCODES a protein that exhibits D1 dopamine receptor binding (ortholog); D2 dopamine receptor binding (ortholog); D3 dopamine receptor binding (ortholog); INVOLVED IN behavioral response to cocaine (ortholog); cellular response to cocaine (ortholog); DNA-templated transcription (ortholog); PARTICIPATES IN dopamine signaling pathway; ASSOCIATED WITH bipolar disorder (ortholog); Brain Hypoxia-Ischemia (ortholog); brain infarction (ortholog); FOUND IN cytoplasm (ortholog); dendritic spine head (ortholog); dendritic spine neck (ortholog) NW_004955451 14378186 14394910 + 102020077 AGCD01043550;AGCD01043551;AGCD01043552;GBDI01001254;XM_013519237 XP_013374691 MODEL 8980471 protein-coding LOC102028092 protein enabled homolog NW_004955485 8994482 8997190 - 102028092 AGCD01058737;AGCD01058738;GBCB01026077;XM_013504019 XP_013359473 MODEL 9012675 ncrna LOC102017839 uncharacterized LOC102017839 NW_004955405 39617278 39622813 - 102017839 AGCD01005502;GBDF01252390;XR_001235917 MODEL 9052183 pseudo LOC102015932 EF-hand domain-containing protein D1 pseudogene NW_004955409 32305466 32315030 + 102015932 AGCD01010357;AGCD01010358;AGCD01010359;XR_259814 MODEL 9018643 protein-coding Tjap1 tight junction associated protein 1 INVOLVED IN Golgi organization (ortholog); FOUND IN cytoplasm (ortholog); endosome (ortholog); Golgi apparatus (ortholog) NW_004955437 9314472 9337021 + 102008661 AGCD01034525;AGCD01034526;GBCE01098674;XM_005389769;XM_005389770;XM_005389773;XM_005389774;XM_005389776;XM_013516816;XM_013516818;XM_013516819 XP_005389826;XP_005389827;XP_005389830;XP_005389831;XP_005389833;XP_013372270;XP_013372272;XP_013372273 MODEL 8703582 protein-coding LOC102006777 olfactory receptor 2G6 NW_004955418 29618805 29621581 - 102006777 AGCD01019475;XM_005382357 XP_005382414 MODEL 8888912 protein-coding LOC102011792 phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 NW_004955431 5628023 5671009 + 102011792 AGCD01030037;AGCD01030038;XM_013515893;XM_013515894 XP_013371347;XP_013371348 MODEL 39133487 snrna U4 U4 spliceosomal RNA 10333698 ncrna LOC106150000 uncharacterized LOC106150000 NW_004955460 9840365 9842792 + 106150000 AGCD01048556;XR_001236510 MODEL 8865526 protein-coding LOC102007148 putative spermatogenesis-associated protein 31D4 NW_004955434 10580926 10593113 + 102007148 AGCD01032355;GBDF01001033;XM_005388673 XP_005388730 MODEL 8766279 pseudo LOC102008641 zinc finger protein OZF-like NW_004955425 1882091 1882998 - 102008641 AGCD01025249 MODEL 8792465 protein-coding Rbx1 ring-box 1 ENCODES a protein that exhibits cullin family protein binding (ortholog); molecular adaptor activity (ortholog); NEDD8 ligase activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to oxidative stress (ortholog); cellular response to UV (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; neddylation pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH Rubinstein-Taybi syndrome (ortholog); Stevens-Johnson syndrome (ortholog); FOUND IN Cul2-RING ubiquitin ligase complex (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); Cul4-RING E3 ubiquitin ligase complex (ortholog) NW_004955413 26579759 26592980 + 102015096 AGCD01014453;AGCD01014454;GBDF01008494;XM_005379338 XP_005379395 MODEL 8958015 protein-coding Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); molecular condensate scaffold activity (ortholog); INVOLVED IN B cell homeostasis (ortholog); B cell receptor signaling pathway (ortholog); blood vessel morphogenesis (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; erythropoietin signaling pathway; Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrial heart septal defect (ortholog); Atrial Septal Defect, Secundum Type (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); GTPase complex (ortholog) NW_004955441 6649895 6724271 - 102013878 AGCD01036937;AGCD01036938;GBCB01041404;XM_005391044 XP_005391101 MODEL 8852151 pseudo LOC102026421 la-related protein 4-like NW_004955475 6546626 6548803 - 102026421 AGCD01054977 MODEL 39134221 ribozyme RNaseP_nuc Nuclear RNase P 8731343 protein-coding Wfdc2 WAP four-disulfide core domain 2 ENCODES a protein that exhibits aspartic-type endopeptidase inhibitor activity (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN club cell differentiation (ortholog); lung vasculature development (ortholog); positive regulation of lung alveolus development (ortholog); ASSOCIATED WITH Bronchiectasis and Nasal Polyposis (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955445 11723634 11730304 - 102004654 AGCD01039714;GBDF01122565;XM_005392423;XM_013518349 XP_005392480;XP_013373803 MODEL 8964897 pseudo LOC102010546 ras-related protein Rab-5A-like NW_004955455 241706 244246 - 102010546 AGCD01045555 MODEL 8929737 protein-coding Psap prosaposin ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); ganglioside GM1 binding (ortholog); ganglioside GM2 binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); antigen processing and presentation (ortholog); cellular response to reactive oxygen species (ortholog); ASSOCIATED WITH atypical Gaucher's disease due to saposin C deficiency (ortholog); Atypical Krabbe Disease due to Saposin A Deficiency (ortholog); combined saposin deficiency (ortholog); FOUND IN aggresome (ortholog); cytoplasm (ortholog); endolysosomal intralumenal vesicle membrane (ortholog) NW_004955437 19667252 19683669 + 102024848 AGCD01034865;GBBH01002383;XM_013516831;XM_013516832;XM_013516833;XM_013516835;XM_013516836;XM_013516837 XP_013372285;XP_013372286;XP_013372287;XP_013372289;XP_013372290;XP_013372291 MODEL 8817217 protein-coding Sacm1l SAC1 like phosphatidylinositide phosphatase ENCODES a protein that exhibits phosphatase activity (ortholog); phosphatidylinositol-3,5-bisphosphate phosphatase activity (ortholog); phosphatidylinositol-3-phosphate phosphatase activity (ortholog); INVOLVED IN exocytic insertion of neurotransmitter receptor to postsynaptic membrane (ortholog); neurotransmitter receptor transport to postsynaptic membrane (ortholog); phosphatidylinositol dephosphorylation (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog) NW_004955420 26231597 26280516 - 102006918 AGCD01021396;AGCD01021397;AGCD01021398;GBDI01179708;XM_005383470 XP_005383527 MODEL 8872071 ncrna LOC102005689 uncharacterized LOC102005689 NW_004955467 6901040 6907444 - 102005689 AGCD01051425;GBDF01303832;XR_263347 MODEL 39131713 snorna SNORA71 Small nucleolar RNA SNORA71 8957778 trna Trnad-guc transfer RNA aspartic acid (anticodon GUC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978829 AGCD01005333;AGCD01005375;AGCD01023470;AGCD01049456;AGCD01050593;AGCD01051466;AGCD01057309 MODEL 8923561 protein-coding Slc24a3 solute carrier family 24 member 3 ENCODES a protein that exhibits calcium, potassium:sodium antiporter activity (ortholog); INVOLVED IN bone mineralization (ortholog); calcium ion transmembrane transport (ortholog); intracellular calcium ion homeostasis (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Salivary Gland Neoplasms (ortholog); FOUND IN cell periphery (ortholog); plasma membrane (ortholog) NW_004955415 27477801 27930108 + 102019800 AGCD01016632;AGCD01016633;AGCD01016634;AGCD01016635;AGCD01016636;GBCE01151533;GBDK01146008;XM_005380939 XP_005380996 MODEL 8740363 protein-coding Pef1 penta-EF-hand domain containing 1 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); identical protein binding (ortholog); protein dimerization activity (ortholog); INVOLVED IN COPII vesicle coating (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); neural crest cell development (ortholog); FOUND IN COPII vesicle coat (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955452 10038380 10055871 - 102011171 AGCD01044267;AGCD01044268;GBBH01165087;XM_005395031 XP_005395088 MODEL 9044104 protein-coding LOC102021890 guanylate-binding protein 6-like NW_004955423 4714157 4742518 + 102021890 AGCD01023543;AGCD01023544;AGCD01023545;GBDF01110686;XM_005385352 XP_005385409 MODEL 8798140 pseudo LOC102003915 SAFB-like transcription modulator NW_004955445 12049621 12053924 - 102003915 AGCD01039731 MODEL 8731979 pseudo LOC102030558 ankyrin repeat domain-containing protein 46 pseudogene NW_004955432 2886488 2887365 + 102030558 AGCD01030620;XR_261510 MODEL 9006776 protein-coding Rap1gap2 RAP1 GTPase activating protein 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN negative regulation of neuron projection development (ortholog); regulation of cell size (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955481 296411 537490 - 102029741 AGCD01056784;AGCD01056785;AGCD01056786;AGCD01056787;AGCD01056788;AGCD01056789;AGCD01056790;AGCD01056791;AGCD01056792;GBDF01189289;JN235985;XM_005402558;XM_005402559;XM_005402561;XM_013503470;XM_013503472;XM_013503473;XM_013503475;XM_013503476;XM_013503477;XM_013503478;XM_013503479;XM_013503480;XM_013503481;XM_013503482;XM_013503483;XM_013503484;XR_263755;XR_263756 AEO17026;XP_005402615;XP_005402616;XP_005402618;XP_013358924;XP_013358926;XP_013358927;XP_013358929;XP_013358930;XP_013358931;XP_013358932;XP_013358933;XP_013358934;XP_013358935;XP_013358936;XP_013358937;XP_013358938 MODEL 10327845 pseudo LOC102009773 Ig heavy chain V-III region 23-like NW_004955569 3800 4314 + 102009773 AGCD01074556 MODEL 9017677 protein-coding C1qa complement C1q A chain ENCODES a protein that exhibits IgG binding (ortholog); IgM binding (ortholog); phosphatidylserine binding (ortholog); INVOLVED IN astrocyte activation (ortholog); complement activation, classical pathway (ortholog); complement-mediated synapse pruning (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Brain Injuries (ortholog); C1q Deficiency (ortholog); FOUND IN cell surface (ortholog); complement component C1 complex (ortholog); complement component C1q complex (ortholog) NW_004955452 2753362 2756220 + 102012920 AGCD01043903;GBDK01006456;XM_013519754 XP_013375208 MODEL 9060418 pseudo LOC102026060 40S ribosomal protein S10 pseudogene NW_004955450 2685641 2686192 + 102026060 AGCD01042394 MODEL 8933063 protein-coding Traf6 TNF receptor associated factor 6 ENCODES a protein that exhibits histone deacetylase binding (ortholog); identical protein binding (ortholog); protein kinase B binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); antiviral innate immune response (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; nuclear factor kappa B signaling pathway; p38 MAPK signaling pathway; ASSOCIATED WITH alcohol use disorder (ortholog); coronary artery disease (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN CD40 receptor complex (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955422 9925765 9950354 + 102004940 AGCD01022725;AGCD01022726;GBBH01094516;GBDF01224038;XM_005384105 XP_005384162 MODEL 8994793 protein-coding Rab26 RAB26, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GMP binding (ortholog); GTP binding (ortholog); INVOLVED IN exocrine system development (ortholog); Golgi to plasma membrane protein transport (ortholog); regulated exocytosis (ortholog); FOUND IN Golgi membrane (ortholog); plasma membrane (ortholog); secretory granule membrane (ortholog) NW_004955442 15114333 15119481 - 102004014 AGCD01037859;GBBH01180568;XM_005391459;XM_005391461;XM_005391463;XM_005391464;XM_013517638 XP_005391516;XP_005391518;XP_005391520;XP_005391521;XP_013373092 MODEL 8860945 protein-coding Smtnl1 smoothelin like 1 ENCODES a protein that exhibits calmodulin binding (ortholog); CH domain binding (ortholog); disordered domain specific binding (ortholog); INVOLVED IN muscle organ morphogenesis (ortholog); negative regulation of DNA-templated transcription (ortholog); peptidyl-serine phosphorylation (ortholog); FOUND IN contractile muscle fiber (ortholog); cytoplasm (ortholog); I band (ortholog) NW_004955511 2512950 2521200 + 102018208 AGCD01066410;GBCB01004951;XM_005407998 XP_005408055 MODEL 8845911 protein-coding Slc9a2 solute carrier family 9 member A2 ENCODES a protein that exhibits sodium:proton antiporter activity (ortholog); INVOLVED IN epithelial cell differentiation (ortholog); intracellular protein localization (ortholog); regulation of intracellular pH (ortholog); ASSOCIATED WITH acute megakaryocytic leukemia (ortholog); aortic dissection (ortholog); Edema (ortholog); FOUND IN apical plasma membrane (ortholog); cell junction (ortholog) NW_004955470 8083737 8137372 + 102022379 AGCD01052819;GBCE01186945;XM_005400774 XP_005400831 MODEL 8967121 pseudo LOC102029158 translocation protein SEC62 pseudogene NW_004955410 33545444 33546696 + 102029158 AGCD01011372 MODEL 8784754 pseudo LOC102027413 60S ribosomal protein L26-like NW_004955419 14237705 14264540 - 102027413 AGCD01020015 MODEL 9061747 protein-coding LOC102018969 glutathione S-transferase B-like NW_004955435 13090324 13096199 + 102018969 AGCD01033181;AGCD01033182;AGCD01033183;GBCQ01003519;XM_013516462 XP_013371916 MODEL 8830654 protein-coding LOC102011301 olfactory receptor 56B1-like NW_004955414 21711391 21712350 + 102011301 AGCD01015429;XM_005380104 XP_005380161 MODEL 8782493 protein-coding Plk5 polo like kinase 5 (inactive) ENCODES a protein that exhibits kinase activity (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); defense response to tumor cell (ortholog); DNA damage response (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog) NW_004955495 6415172 6424445 - 102028985 AGCD01062081;GBDJ01030988;XM_005405960;XM_013505279;XM_013505280;XM_013505281;XM_013505282;XM_013505283;XM_013505284;XM_013505285;XM_013505286;XM_013505287;XM_013505288;XM_013505289;XM_013505290 XP_005406017;XP_013360733;XP_013360734;XP_013360735;XP_013360736;XP_013360737;XP_013360738;XP_013360739;XP_013360740;XP_013360741;XP_013360742;XP_013360743;XP_013360744 MODEL 10298463 protein-coding LOC106147163 vomeronasal type-2 receptor 116-like NW_004955524 4271669 4318987 - 106147163 AGCD01068963;AGCD01068964;AGCD01068965;AGCD01068966;AGCD01068967;XM_013507205 XP_013362659 MODEL 9050197 protein-coding Traf7 TNF receptor associated factor 7 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN apoptotic process (ortholog); cellular response to interleukin-6 (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH adenomatoid tumor (ortholog); Cardiac, Facial, and Digital Anomalies with Developmental Delay (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955442 15092955 15112842 - 102030352 AGCD01037859;GBDJ01229191;XM_005391453;XM_013517736;XM_013517737;XM_013517738;XM_013517739 XP_005391510;XP_013373190;XP_013373191;XP_013373192;XP_013373193 MODEL 8703700 protein-coding Ptpn11 protein tyrosine phosphatase non-receptor type 11 ENCODES a protein that exhibits cadherin binding (ortholog); cell adhesion molecule binding (ortholog); D1 dopamine receptor binding (ortholog); INVOLVED IN atrioventricular canal development (ortholog); axonogenesis (ortholog); Bergmann glial cell differentiation (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; erythropoietin signaling pathway; fibroblast growth factor signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); acute promyelocytic leukemia (ortholog); adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); focal adhesion (ortholog) NW_004955482 8934734 9031230 + 102009502 AGCD01057558;AGCD01057559;AGCD01057560;GBDF01081705;XM_005403196;XM_005403197;XM_005403198;XM_013503715;XM_013503717 XP_005403253;XP_005403254;XP_005403255;XP_013359169;XP_013359171 MODEL 9049307 ncrna LOC102017844 uncharacterized LOC102017844 NW_004955407 37132665 37188696 - 102017844 AGCD01007778;AGCD01007779;GBDF01281780;XR_001231639;XR_001231640;XR_001231642;XR_259617 MODEL 8861867 protein-coding Sema4c semaphorin 4C INVOLVED IN cell migration in hindbrain (ortholog); cerebellum development (ortholog); muscle cell differentiation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog); postsynaptic density membrane (ortholog) NW_004955470 4213006 4220167 - 102023897 AGCD01052728;GBCE01075898;GBDI01172471;XM_013522747 XP_013378201 MODEL 9060849 protein-coding Sacs sacsin molecular chaperone ENCODES a protein that exhibits Hsp70 protein binding (ortholog); identical protein binding (ortholog); low-density lipoprotein particle receptor binding (ortholog); INVOLVED IN negative regulation of inclusion body assembly (ortholog); ASSOCIATED WITH ATAXIA, SPASTIC, CHILDHOOD-ONSET, AUTOSOMAL RECESSIVE, WITH OPTIC ATROPHY AND MENTAL RETARDATION (ortholog); Charcot-Marie-Tooth disease X-linked dominant 1 (ortholog); Charlevoix-Saguenay spastic ataxia (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955497 3701515 3752627 - 102016491 AGCD01062552;AGCD01062553;GBCB01097721;GBCE01012315;XM_005406316 XP_005406373 MODEL 8993438 pseudo LOC102008645 glycolipid transfer protein pseudogene NW_004955501 6968136 6973149 + 102008645 AGCD01064202;XM_005406840 MODEL 8817328 ncrna LOC102011796 uncharacterized LOC102011796 NW_004955433 7192628 7234562 + 102011796 AGCD01031566;AGCD01031567;GBDF01254267;XR_001234703;XR_001234704;XR_261565 MODEL 8788209 protein-coding Prkd2 protein kinase D2 ENCODES a protein that exhibits protein kinase activity (ortholog); protein kinase C binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN cellular response to vascular endothelial growth factor stimulus (ortholog); intracellular signal transduction (ortholog); positive regulation of angiogenesis (ortholog); ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); polycystic ovary syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955574 723933 750794 - 102029242 AGCD01075126;GBBH01116301;XM_005413839;XM_005413841;XM_013509567;XM_013509568 XP_005413896;XP_005413898;XP_013365021;XP_013365022 MODEL 9065199 pseudo LOC102019372 trifunctional enzyme subunit alpha, mitochondrial pseudogene NW_004955411 23447126 23462571 - 102019372 AGCD01012108 MODEL 8719462 protein-coding Lmna lamin A/C ENCODES a protein that exhibits identical protein binding (ortholog); protein phosphatase 1 binding (ortholog); structural constituent of cytoskeleton (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular senescence (ortholog); DNA double-strand break attachment to nuclear envelope (ortholog); PARTICIPATES IN atherosclerosis pathway; ASSOCIATED WITH achalasia (ortholog); aortic valve disease 2 (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); FOUND IN lamin filament (ortholog); nuclear envelope (ortholog); nuclear lamina (ortholog) NW_004955545 2290076 2310982 + 102018770 AGCD01071894;AGCD01071895;GBBH01034310;XM_005411648;XM_013508332 XP_005411705;XP_013363786 MODEL 8722519 protein-coding Rc3h1 ring finger and CCCH-type domains 1 ENCODES a protein that exhibits CCR4-NOT complex binding (ortholog); double-stranded RNA binding (ortholog); miRNA binding (ortholog); INVOLVED IN 3'-UTR-mediated mRNA destabilization (ortholog); B cell homeostasis (ortholog); lymph node development (ortholog); ASSOCIATED WITH Familial Hemophagocytic Lymphohistiocytosis 6 (ortholog); peripheral T-cell lymphoma (ortholog); systemic lupus erythematosus (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955406 14053122 14123023 - 102010666 AGCD01005956;AGCD01005957;GBCB01000291;XM_005374881;XM_005374883 XP_005374938;XP_005374940 MODEL 8882373 protein-coding Pcmtd1 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 ENCODES a protein that exhibits S-adenosylmethionine-dependent methyltransferase activity (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog) NW_004955454 11445684 11481076 - 102027042 AGCD01045388;GBBH01090284;XM_005396051 XP_005396108 MODEL 39133736 ribozyme RNaseP_nuc Nuclear RNase P 8767706 ncrna LOC102012930 uncharacterized LOC102012930 NW_004955408 11342486 11344637 + 102012930 AGCD01008307;GBDF01286807;XR_259678 MODEL 8784868 protein-coding Wfdc3 WAP four-disulfide core domain 3 NW_004955445 11501044 11512109 + 102029675 AGCD01039697;AGCD01039698;GBDF01119525;XM_005392415;XM_005392416;XM_005392418;XM_013518337;XM_013518339 XP_005392472;XP_005392473;XP_005392475;XP_013373791;XP_013373793 MODEL 8725642 protein-coding Rgs7 regulator of G protein signaling 7 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); G-protein beta-subunit binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); negative regulation of G protein-coupled receptor signaling pathway (ortholog); positive regulation of GTPase activity (ortholog); PARTICIPATES IN dopamine signaling pathway via D1 family of receptors; dopamine signaling pathway via D2 family of receptors; G protein mediated signaling pathway via Galphai family; ASSOCIATED WITH Experimental Seizures (ortholog); intellectual disability (ortholog); morphine dependence (ortholog); FOUND IN cell tip (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955406 10669127 11127564 + 102019356 AGCD01005869;AGCD01005870;AGCD01005871;AGCD01005872;AGCD01005873;AGCD01005874;AGCD01005875;AGCD01005876;AGCD01005877;AGCD01005878;AGCD01005879;AGCD01005880;AGCD01005881;AGCD01005882;GBCE01084812;GBCE01084814;XM_005374822;XM_005374823;XM_005374824;XM_005374825;XM_005374826;XM_013520541;XM_013520556 XP_005374879;XP_005374880;XP_005374881;XP_005374882;XP_005374883;XP_013375995;XP_013376010 MODEL 9059429 protein-coding Ppp1r1c protein phosphatase 1 regulatory inhibitor subunit 1C NW_004955403 15219140 15340467 - 102018247 AGCD01002042;GBCQ01047452;XM_013515176 XP_013370630 MODEL 8728419 pseudo LOC102015936 60S ribosomal protein L26-like 1 pseudogene NW_004955466 8883590 8883988 + 102015936 AGCD01051003 MODEL 8956473 ncrna LOC102005690 uncharacterized LOC102005690 NW_004955413 2434741 2435420 - 102005690 AGCD01013546;GBDF01017398;XR_260051 MODEL 8890548 protein-coding Psapl1 prosaposin like 1 FOUND IN cytosol (ortholog) NW_004955514 3229519 3232393 + 102014388 AGCD01067093;GBBH01032132;XM_005408794 XP_005408851 MODEL 8771812 protein-coding Tjp1 tight junction protein 1 ENCODES a protein that exhibits beta-catenin binding (ortholog); connexin binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actomyosin structure organization (ortholog); adherens junction maintenance (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); bile duct cancer (ortholog); brain disease (ortholog); FOUND IN adherens junction (ortholog); anchoring junction (ortholog); apical junction complex (ortholog) NW_004955416 28640807 28869717 + 102012321 AGCD01017634;AGCD01017635;AGCD01017636;AGCD01017637;AGCD01017638;GBDF01053729;XM_005381650;XM_005381653;XM_005381654;XM_005381656;XM_005381657 XP_005381707;XP_005381710;XP_005381711;XP_005381713;XP_005381714 MODEL 8867659 protein-coding LOC102024600 olfactory receptor 4C15-like NW_004955511 234273 235214 + 102024600 AGCD01066325;XM_005408183 XP_005408240 MODEL 8921630 ncrna LOC102028745 uncharacterized LOC102028745 NW_004955416 2060209 2069485 + 102028745 AGCD01016846;GBDF01110865;XR_260348 MODEL 10380316 protein-coding LOC106148257 cuticle collagen 2-like NW_004955418 14329047 14331385 - 106148257 AGCD01019072;GBDI01264746;GBDK01342339;XM_013513021 XP_013368475 MODEL 8777890 ncrna LOC102021894 uncharacterized LOC102021894 NW_004955424 22221862 22225679 - 102021894 AGCD01024945;AGCD01024946;GBDI01244494;XR_261100 MODEL 8782463 protein-coding Sfxn3 sideroflexin 3 ENCODES a protein that exhibits L-serine transmembrane transporter activity (ortholog); INVOLVED IN mitochondrial transmembrane transport (ortholog); one-carbon metabolic process (ortholog); serine import into mitochondrion (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955485 9157657 9165243 - 102028972 AGCD01058748;AGCD01058749;GBBH01035640;GBBH01035644;XM_005403880 XP_005403937 MODEL 8951937 ncrna LOC102026423 uncharacterized LOC102026423 NW_004955416 13028669 13076571 + 102026423 AGCD01017218;GBDF01252211;XR_001233326;XR_260376;XR_260378 MODEL 8797314 protein-coding Epb41l2 erythrocyte membrane protein band 4.1 like 2 ENCODES a protein that exhibits PH domain binding (ortholog); spectrin binding (ortholog); INVOLVED IN positive regulation of protein localization to cell cortex (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cell cortex (ortholog); cell junction (ortholog); COP9 signalosome (ortholog) NW_004955436 11650584 11805822 - 102030344 AGCD01033818;AGCD01033819;AGCD01033820;GBBH01093601;XM_013516681 XP_013372135 MODEL 8795015 ncrna LOC102023617 uncharacterized LOC102023617 NW_004955426 24389136 24391879 + 102023617 AGCD01026678;GBDF01237121;XR_261220 MODEL 8880610 protein-coding LOC102010548 keratin-associated protein 20-2-like NW_004955407 30234861 30239217 - 102010548 AGCD01007628;AGCD01007629;XM_005375651;XM_013506303 XP_005375708;XP_013361757 MODEL 8932588 protein-coding Sos2 SOS Ras/Rho guanine nucleotide exchange factor 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN B cell homeostasis (ortholog); insulin receptor signaling pathway (ortholog); lymphocyte homeostasis (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; insulin signaling pathway; interleukin-6 signaling pathway; ASSOCIATED WITH Developmental Disease (ortholog); male infertility (ortholog); Noonan syndrome (ortholog) NW_004955409 12542353 12622165 + 102029054 AGCD01009552;AGCD01009553;AGCD01009554;AGCD01009555;AGCD01009556;GBBH01006505;GBCE01103866;XM_013510338 XP_013365792 MODEL 8755577 protein-coding Rab27a RAB27A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); blood coagulation (ortholog); complement-dependent cytotoxicity (ortholog); PARTICIPATES IN insulin secretion pathway; ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); Congenital Abnormalities (ortholog); Disease Progression (ortholog); FOUND IN apical plasma membrane (ortholog); dendrite (ortholog); exocytic vesicle (ortholog) NW_004955409 588725 621874 + 102012406 AGCD01009156;AGCD01009157;AGCD01009158;GBCQ01179256;XM_005376611;XM_005376612;XM_005376613;XM_005376614 XP_005376668;XP_005376669;XP_005376670;XP_005376671 MODEL 39133735 ribozyme RNaseP_nuc Nuclear RNase P 39131716 snorna SNORA71 Small nucleolar RNA SNORA71 8872308 protein-coding LOC102018971 melanoma-associated antigen B1-like NW_004955531 753754 758259 + 102018971 AGCD01070008;AGCD01070009;GBCQ01164686;XM_005410134;XM_005410135 XP_005410191;XP_005410192 MODEL 8889560 protein-coding Rc3h2 ring finger and CCCH-type domains 2 ENCODES a protein that exhibits DNA binding (ortholog); double-stranded RNA binding (ortholog); mRNA binding (ortholog); INVOLVED IN B cell homeostasis (ortholog); limb development (ortholog); lung alveolus development (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); membrane (ortholog) NW_004955419 5054288 5103926 + 102003767 AGCD01019781;AGCD01019782;GBDF01192823;XM_005382518;XM_005382519 XP_005382575;XP_005382576 MODEL 39133375 snrna U4 U4 spliceosomal RNA 9018351 protein-coding Slc24a4 solute carrier family 24 member 4 ENCODES a protein that exhibits calcium, potassium:sodium antiporter activity (ortholog); calcium-dependent protein binding (ortholog); calmodulin binding (ortholog); INVOLVED IN amelogenesis (ortholog); calcium ion export across plasma membrane (ortholog); calcium ion homeostasis (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta hypomaturation type 2A5 (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); cone photoreceptor outer segment (ortholog); cytoplasm (ortholog) NW_004955438 14609779 14765516 + 102026477 AGCD01035347;AGCD01035348;AGCD01035349;AGCD01035350;GBDI01034773;XM_005390329;XM_013517214 XP_005390386;XP_013372668 MODEL 8735694 ncrna LOC102007156 uncharacterized LOC102007156 NW_004955440 17575869 17579753 - 102007156 AGCD01036575;GBDF01304834;XR_262035 MODEL 8763433 pseudo LOC102003918 stress-induced-phosphoprotein 1-like NW_004955447 5714882 5718387 - 102003918 AGCD01040769 MODEL 8804392 pseudo LOC102017846 heat shock cognate 71 kDa protein-like NW_004955407 35524223 35534029 - 102017846 AGCD01007744;AGCD01007745 MODEL 8737535 pseudo LOC102009774 calmodulin-A pseudogene NW_004955573 459943 467278 + 102009774 AGCD01074980 MODEL 8913500 protein-coding Sema4d semaphorin 4D ENCODES a protein that exhibits identical protein binding (ortholog); receptor ligand activity (ortholog); semaphorin receptor binding (ortholog); INVOLVED IN bone trabecula morphogenesis (ortholog); leukocyte aggregation (ortholog); negative regulation of cell adhesion (ortholog); FOUND IN extracellular region (ortholog); GABA-ergic synapse (ortholog); plasma membrane (ortholog) NW_004955515 2573816 2676387 + 102016085 AGCD01067257;AGCD01067258;AGCD01067259;GBCB01020045;GBCQ01041776;XM_005408875;XM_005408877 XP_005408932;XP_005408934 MODEL 8972812 protein-coding LOC102026064 L-threonine 3-dehydrogenase, mitochondrial-like NW_004955403 52745241 52753896 + 102026064 AGCD01003017;GBCE01040737;GBDF01306332;XM_013514503 XP_013369957 MODEL 8999496 protein-coding LOC102010931 olfactory receptor 9G4-like NW_004955511 1803413 1804351 - 102010931 AGCD01066380;XM_005407978 XP_005408035 MODEL 8962504 protein-coding Tjp2 tight junction protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); protein domain specific binding (ortholog); protein tyrosine kinase binding (ortholog); INVOLVED IN establishment of endothelial intestinal barrier (ortholog); homotypic cell-cell adhesion (ortholog); intestinal absorption (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant nonsyndromic deafness 51 (ortholog); branchiootorenal syndrome (ortholog); FOUND IN bicellular tight junction (ortholog); cell junction (ortholog); cell surface (ortholog) NW_004955434 3781368 3923240 - 102005497 AGCD01032143;AGCD01032144;AGCD01032145;AGCD01032146;AGCD01032147;AGCD01032148;GBCE01075388;GBDJ01089898;XM_005388570;XM_013516340 XP_005388627;XP_013371794 MODEL 8972133 protein-coding LOC102028094 somatostatin-like NW_004955420 20175493 20176631 + 102028094 AGCD01021082;GBDJ01399368;XM_005383599 XP_005383656 MODEL 10312557 ncrna LOC106148258 uncharacterized LOC106148258 NW_004955418 4568283 4593434 + 106148258 AGCD01018826;AGCD01018827;XR_001233537 MODEL 8880089 ncrna LOC102029163 uncharacterized LOC102029163 NW_004955464 11026533 11035222 - 102029163 AGCD01050135;GBCE01025478;XR_001236657;XR_001236658 MODEL 8858970 pseudo LOC102027419 eukaryotic translation initiation factor 4E pseudogene NW_004955496 803626 804237 - 102027419 AGCD01062244 MODEL 8968369 protein-coding Lmnb1 lamin B1 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); phospholipase binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cellular response to 2,3,7,8-tetrachlorodibenzodioxine (ortholog); cellular response to corticosterone stimulus (ortholog); cellular response to L-glutamate (ortholog); ASSOCIATED WITH adult onset demyelinating leukodystrophy (ortholog); Animal Disease Models (ortholog); autosomal dominant primary microcephaly 26 (ortholog); FOUND IN lamin filament (ortholog); nuclear envelope (ortholog); nuclear inner membrane (ortholog) NW_004955521 4583691 4612271 + 102020157 AGCD01068273;GBBH01026773;XM_013507092 XP_013362546 MODEL 8915665 protein-coding Slc9a3 solute carrier family 9 member A3 ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN circadian rhythm (ortholog); intracellular sodium ion homeostasis (ortholog); receptor-mediated endocytosis (ortholog); PARTICIPATES IN endothelin signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); chronic kidney disease (ortholog); congenital secretory sodium diarrhea 8 (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog) NW_004955504 226192 260632 - 102021372 AGCD01064816;GBCQ01005944;XM_005407000;XM_005407001 XP_005407057;XP_005407058 MODEL 8777635 pseudo LOC102011308 protein slowmo homolog 2 pseudogene NW_004955415 30282254 30283847 + 102011308 AGCD01016660 MODEL 8753201 protein-coding Pllp plasmolipin ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN monoatomic ion transport (ortholog); myelin assembly (ortholog); myelination (ortholog); ASSOCIATED WITH malignant mesothelioma (ortholog); schizophrenia (ortholog); FOUND IN apical plasma membrane (ortholog); compact myelin (ortholog); Golgi apparatus (ortholog) NW_004955433 14896087 14915794 - 102025039 AGCD01031731;AGCD01031732;GBBH01093584;XM_005388384 XP_005388441 MODEL 8907098 protein-coding Wfdc5 WAP four-disulfide core domain 5 NW_004955445 12279799 12284819 + 102013123 AGCD01039749;GBDJ01360367;XM_005392453 XP_005392510 MODEL 8885325 ncrna LOC102030561 uncharacterized LOC102030561 NW_004955432 15297427 15357833 + 102030561 AGCD01031061;AGCD01031062;GBDK01307477;XR_001234656;XR_001234657;XR_001234658;XR_001234659 MODEL 8889035 protein-coding Peg10 paternally expressed 10 This gene is thought to have been derived from the Ty3/Gypsy family of retrotransposons. It contains two overlapping open reading frames, RF1 and RF2, and expresses two proteins: a shorter, gag-like protein (with a CCHC-type zinc finger domain) from RF1; and a longer, gag/pol-like fusion protein (with an additional aspartic protease motif) from RF1/RF2 by -1 translational frameshifting (-1 FS). While -1 FS has been observed in RNA viruses and transposons in both prokaryotes and eukaryotes, this gene represents the first example of -1 FS in a eukaryotic cellular gene. This gene is highly conserved across mammalian species and retains the heptanucleotide (GGGAAAC) and pseudoknot elements required for -1 FS. It is expressed in adult and embryonic tissues (most notably in placenta) and reported to have a role in cell proliferation, differentiation, apoptosis and cancer development. Knockout mice lacking this gene showed early embryonic lethality with placental defects, indicating the importance of this gene in embryonic development. [provided by RefSeq, Oct 2014] NW_004955432 11383919 11395313 + 102014815 AGCD01030948;AGCD01030949;GBDF01052012;NM_001291250;NM_001291251 NP_001278179;NP_001278180 REVIEWED 8713916 protein-coding Trafd1 TRAF-type zinc finger domain containing 1 INVOLVED IN negative regulation of innate immune response (ortholog); response to cytokine (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955482 8693323 8710226 + 102007771 AGCD01057549;AGCD01057550;GBCB01077429;GBDF01048404;XM_005403189 XP_005403246 MODEL 8724884 ncrna LOC102018973 uncharacterized LOC102018973 NW_004955533 929825 934774 + 102018973 AGCD01070335;GBDI01248267;XR_001232039;XR_001232040;XR_001232041 MODEL 8715687 protein-coding Rap1gds1 Rap1 GTPase-GDP dissociation stimulator 1 ENCODES a protein that exhibits GTPase regulator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN angiotensin-activated signaling pathway (ortholog); CAAX-box protein maturation (ortholog); cardiac muscle hypertrophy (ortholog); ASSOCIATED WITH ALFADHEL SYNDROME (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); extracellular region (ortholog) NW_004955405 8555117 8708604 + 102019351 AGCD01004747;AGCD01004748;AGCD01004749;AGCD01004750;GBDF01002792;GBDF01002797;XM_013517446;XM_013517447 XP_013372900;XP_013372901 MODEL 8728223 protein-coding LOC102008649 olfactory receptor 5M11-like NW_004955511 1679591 1680559 - 102008649 AGCD01066377;XM_005407971 XP_005408028 MODEL 8874040 protein-coding Psat1 phosphoserine aminotransferase 1 ENCODES a protein that exhibits identical protein binding (ortholog); O-phospho-L-serine:2-oxoglutarate transaminase activity (ortholog); INVOLVED IN L-serine biosynthetic process (ortholog); negative regulation of ferroptosis (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH Animal Disease Models (ortholog); genetic disease (ortholog); High Myopia (ortholog); FOUND IN cytosol (ortholog) NW_004955512 1132452 1155405 - 102024490 AGCD01066633;AGCD01066634;GBDI01292993;XM_005408295 XP_005408352 MODEL 8738102 protein-coding Smtnl2 smoothelin like 2 NW_004955467 12325436 12347569 - 102010571 AGCD01051631;GBCB01002938;XM_005399680;XM_005399681 XP_005399737;XP_005399738 MODEL 8766535 protein-coding Pcmtd2 protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2 NW_004955528 7931 26228 - 102021384 AGCD01069513;GBCB01002206;XM_005409899 XP_005409956 MODEL 8993925 trna Trnae-cuc transfer RNA glutamic acid (anticodon CUC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955568;NW_004955418;NW_004955445;NW_004955465 63038;29926685;16045097;13921469 63109;29926756;16045169;13921540 -;+;+;+ 101978831 AGCD01019491;AGCD01039863;AGCD01050636;AGCD01074502 MODEL 8750916 protein-coding Sost sclerostin ENCODES a protein that exhibits carbohydrate binding (ortholog); DNA-binding transcription factor binding (ortholog); molecular function inhibitor activity (ortholog); INVOLVED IN cellular response to parathyroid hormone stimulus (ortholog); negative regulation of BMP signaling pathway (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH autosomal dominant craniodiaphyseal dysplasia (ortholog); bone development disease (ortholog); genetic disease (ortholog); FOUND IN extracellular region (ortholog); Golgi apparatus (ortholog); protein-containing complex (ortholog) NW_004955451 17054939 17058027 - 102004446 AGCD01043715;AGCD01043716;GBCE01062769;XM_005394641 XP_005394698 MODEL 8982899 protein-coding Tjp3 tight junction protein 3 INVOLVED IN regulation of G1/S transition of mitotic cell cycle (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); COVID-19 (ortholog); Prostatic Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); bicellular tight junction (ortholog); cell junction (ortholog) NW_004955495 5620817 5647211 + 102007672 AGCD01062015;AGCD01062016;AGCD01062017;GBBH01087934;XM_005405882;XM_005405883;XM_013505215 XP_005405939;XP_005405940;XP_013360669 MODEL 10118772 ncrna LOC106147164 uncharacterized LOC106147164 NW_004955524 2592259 2593048 - 106147164 AGCD01068823;GBDJ01164425;XR_001231943 MODEL 39134220 ribozyme RNaseP_nuc Nuclear RNase P 8905600 protein-coding Epb41l3 erythrocyte membrane protein band 4.1 like 3 INVOLVED IN axon development (ortholog); myelin maintenance (ortholog); neuron projection morphogenesis (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); esophagus squamous cell carcinoma (ortholog); meningioma (ortholog); FOUND IN axolemma (ortholog); cell junction (ortholog); cell-cell junction (ortholog) NW_004955402 5459586 5674745 + 102005981 AGCD01000136;AGCD01000137;GBDF01004195;XM_005372623;XM_005372625;XM_005372626;XM_005372627;XM_005372629;XM_005372630;XM_013516834;XM_013516878;XM_013516964;XM_013517037;XM_013517088;XM_013517123;XM_013517195;XM_013517228;XM_013517264;XM_013517295;XM_013517317;XM_013517351;XM_013517381;XM_013517413;XM_013517440 XP_005372680;XP_005372682;XP_005372683;XP_005372684;XP_005372686;XP_005372687;XP_013372288;XP_013372332;XP_013372418;XP_013372491;XP_013372542;XP_013372577;XP_013372649;XP_013372682;XP_013372718;XP_013372749;XP_013372771;XP_013372805;XP_013372835;XP_013372867;XP_013372894 MODEL 9058595 protein-coding C1qb complement C1q B chain ENCODES a protein that exhibits identical protein binding (ortholog); IgG binding (ortholog); IgM binding (ortholog); INVOLVED IN complement activation, classical pathway (ortholog); inner ear development (ortholog); response to glucocorticoid (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); C1q Deficiency (ortholog); C1q Deficiency 2 (ortholog); FOUND IN cell surface (ortholog); complement component C1 complex (ortholog); complement component C1q complex (ortholog) NW_004955452 2765844 2771695 + 102010120 AGCD01043903;GBCE01000145;XM_005394745;XM_013519694 XP_005394802;XP_013375148 MODEL 8742025 protein-coding LOC102005691 NKG2-D type II integral membrane protein ENCODES a protein that exhibits identical protein binding (ortholog); protein phosphatase binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN natural killer cell mediated cytotoxicity (ortholog); negative regulation of GTPase activity (ortholog); negative regulation of natural killer cell chemotaxis (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955413 7489158 7503014 + 102005691 AGCD01013822;GBDK01000444;XM_013511691;XM_013511692;XR_260066 XP_013367145;XP_013367146 MODEL 9067826 pseudo LOC102024609 zinc finger protein 277 pseudogene NW_004955525 3961128 3986485 + 102024609 AGCD01069164;AGCD01069165 MODEL 8949353 ncrna LOC102011798 uncharacterized LOC102011798 NW_004955521 1606251 1622200 - 102011798 AGCD01068190;GBDF01280812;XR_001231893;XR_001231894 MODEL 8835917 ncrna LOC102028746 uncharacterized LOC102028746 NW_004955477 10717537 10733781 - 102028746 AGCD01055706;GBDF01013860;XR_263672 MODEL 39133377 snrna U4 U4 spliceosomal RNA 9050244 ncrna LOC102030563 uncharacterized LOC102030563 NW_004955434 22886989 22901908 - 102030563 AGCD01032688;GBDF01189713;XR_261643 MODEL 8885922 protein-coding LOC102021895 melanoma-associated antigen 8-like NW_004955498 3686475 3687449 + 102021895 AGCD01062922;XM_005406479 XP_005406536 MODEL 8934545 pseudo LOC102003922 tubulin polyglutamylase TTLL4 pseudogene NW_004955585 115408 119336 - 102003922 AGCD01075993 MODEL 9042426 ncrna LOC102009778 uncharacterized LOC102009778 NW_004955402 5585104 5592598 - 102009778 AGCD01000137;GBDF01225737;XR_259030 MODEL 8717092 protein-coding Prkd3 protein kinase D3 ENCODES a protein that exhibits kinase activity (ortholog); ASSOCIATED WITH Weight Gain (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955441 5051079 5112791 - 102004976 AGCD01036867;AGCD01036868;AGCD01036869;GBBH01149583;GBDJ01031250;XM_005390869 XP_005390926 MODEL 10097637 protein-coding LOC106150001 cytohesin-3 NW_004955460 10842860 10843809 - 106150001 AGCD01048619;GBDK01183147;XM_013521143 XP_013376597 MODEL 8719926 pseudo LOC102012938 60S ribosomal protein L37a-like NW_004955464 13764223 13764774 + 102012938 AGCD01050293 MODEL 8769250 protein-coding Sema4f ssemaphorin 4F INVOLVED IN axon guidance (ortholog); negative regulation of axon extension (ortholog); retinal ganglion cell axon guidance (ortholog); ASSOCIATED WITH malignant mesothelioma (ortholog); FOUND IN endoplasmic reticulum (ortholog); glutamatergic synapse (ortholog); membrane (ortholog) NW_004955424 11123326 11152909 - 102020136 AGCD01024549;AGCD01024550;GBDK01316796;XM_005385478;XM_005385479;XM_005385480;XM_005385481 XP_005385535;XP_005385536;XP_005385537;XP_005385538 MODEL 8969718 pseudo LOC102023619 etoposide-induced protein 2.4 homolog pseudogene NW_004955427 20971315 20972479 + 102023619 AGCD01027429 MODEL 8716687 protein-coding LOC102010566 olfactory receptor 151-like NW_004955412 25630768 25631700 + 102010566 AGCD01013166;XM_005378428 XP_005378485 MODEL 8703293 protein-coding Rgs7bp regulator of G protein signaling 7 binding protein INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); regulation of postsynaptic membrane potential (ortholog); PARTICIPATES IN dopamine signaling pathway via D1 family of receptors; dopamine signaling pathway via D2 family of receptors; G protein mediated signaling pathway via Galphai family; FOUND IN axon (ortholog); cytoplasm (ortholog); dendritic shaft (ortholog) NW_004955446 4354689 4451269 - 102022648 AGCD01040034;AGCD01040035;AGCD01040036;AGCD01040037;GBDJ01301600;XM_005392636 XP_005392693 MODEL 8786459 pseudo LOC102015937 replication protein A 70 kDa DNA-binding subunit pseudogene NW_004955412 29948306 29949423 - 102015937 AGCD01013287;XR_260031 MODEL 9000326 protein-coding Rap2a RAP2A, member of RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); establishment of protein localization (ortholog); intracellular protein localization (ortholog); ASSOCIATED WITH rheumatoid arthritis (ortholog); FOUND IN cytosol (ortholog); endolysosome (ortholog); Golgi apparatus (ortholog) NW_004955404 12897518 12936964 - 102018678 AGCD01003477;GBDI01138502;GBDK01273710;XM_005374084 XP_005374141 MODEL 8940646 protein-coding LOC102029164 olfactory receptor 4D5 NW_004955412 24570586 24582450 + 102029164 AGCD01013117;AGCD01013118;GBDF01287306;XM_005378405 XP_005378462 MODEL 8777949 protein-coding Ppp1r2 protein phosphatase 1 regulatory inhibitor subunit 2 ENCODES a protein that exhibits molecular function inhibitor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN negative regulation of protein binding (ortholog); FOUND IN dendritic spine (ortholog); growth cone (ortholog) NW_004955420 13592508 13613165 + 102024684 AGCD01020925;GBDI01077892;XM_005415381;XM_013513575 XP_005415438;XP_013369029 MODEL 9056296 protein-coding Lmnb2 lamin B2 ENCODES a protein that exhibits identical protein binding (ortholog); structural constituent of cytoskeleton (ortholog); ASSOCIATED WITH autosomal dominant primary microcephaly 27 (ortholog); Myoclonic Epilepsies (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN lamin filament (ortholog); nuclear envelope (ortholog); nuclear lamina (ortholog) NW_004955495 4826653 4851984 - 102009293 AGCD01061953;AGCD01061954;AGCD01061955;AGCD01061956;AGCD01061957;AGCD01061958;GBCB01086244;GBDI01188605;XM_013505227 XP_013360681 MODEL 39131710 snorna SNORA71 Small nucleolar RNA SNORA71 8996427 protein-coding Ptpn12 protein tyrosine phosphatase non-receptor type 12 ENCODES a protein that exhibits phosphoprotein phosphatase activity (ortholog); protein tyrosine phosphatase activity (ortholog); SH3 domain binding (ortholog); INVOLVED IN cellular response to epidermal growth factor stimulus (ortholog); peptidyl-tyrosine dephosphorylation (ortholog); protein dephosphorylation (ortholog); ASSOCIATED WITH colon carcinoma (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cytosol (ortholog); podosome (ortholog) NW_004955410 7556283 7599170 - 102011513 AGCD01010719;AGCD01010720;GBBH01228182;XM_005377213 XP_005377270 MODEL 9015917 protein-coding Rab27b RAB27B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN anterograde axonal protein transport (ortholog); multivesicular body sorting pathway (ortholog); positive regulation of exocytosis (ortholog); ASSOCIATED WITH Disease Progression (ortholog); Neoplasm Invasiveness (ortholog); platelet storage pool deficiency (ortholog); FOUND IN apical plasma membrane (ortholog); Golgi apparatus (ortholog); Golgi stack (ortholog) NW_004955402 39357500 39415530 + 102026492 AGCD01000980;AGCD01000981;GBCE01129930;XM_005372952;XM_013510869 XP_005373009;XP_013366323 MODEL 8818596 protein-coding Pln phospholamban ENCODES a protein that exhibits ATPase inhibitor activity (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN acrosome assembly (ortholog); adenylate cyclase-activating adrenergic receptor signaling pathway (ortholog); calcium ion transport (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH atrial fibrillation (ortholog); cardiomyopathy (ortholog); centronuclear myopathy (ortholog); FOUND IN calcium ion-transporting ATPase complex (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955436 1439098 1447070 + 102010626 AGCD01033577;GBDK01316951;XM_005389124 XP_005389181 MODEL 9031868 pseudo LOC102017847 E3 ubiquitin-protein ligase XIAP pseudogene NW_004955458 3142433 3143246 + 102017847 AGCD01047274 MODEL 8719963 protein-coding Slc24a5 solute carrier family 24 member 5 ENCODES a protein that exhibits calcium ion transmembrane transporter activity (ortholog); calcium, potassium:sodium antiporter activity (ortholog); INVOLVED IN calcium ion import (ortholog); monoatomic ion transmembrane transport (ortholog); negative regulation of melanin biosynthetic process (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH genetic disease (ortholog); ocular albinism 1 (ortholog); oculocutaneous albinism type VI (ortholog); FOUND IN melanosome (ortholog); trans-Golgi network (ortholog) NW_004955409 5747624 5768122 - 102013803 AGCD01009322;AGCD01009323;GBDI01093137;XM_005376708 XP_005376765 MODEL 9043444 pseudo LOC102026428 39S ribosomal protein L47, mitochondrial pseudogene NW_004955419 11406873 11407771 - 102026428 AGCD01019955 MODEL 8994372 ncrna LOC102018978 uncharacterized LOC102018978 NW_004955538 50810 55747 + 102018978 AGCD01070984;GBDF01116779;XR_264782 MODEL 9027483 protein-coding LOC102019383 olfactory receptor 51S1 NW_004955414 20464355 20465326 - 102019383 AGCD01015375;XM_005380058 XP_005380115 MODEL 9060419 protein-coding LOC102026065 cytoskeleton-associated protein 2-like NW_004955403 5756594 5789342 - 102026065 AGCD01001820;XM_013514731 XP_013370185 MODEL 8762066 pseudo LOC102008651 olfactory receptor 5W2-like NW_004955511 816950 817885 + 102008651 AGCD01066344 MODEL 9048252 protein-coding C1qbp complement C1q binding protein ENCODES a protein that exhibits adrenergic receptor binding (ortholog); C5-methylcytidine-containing RNA reader activity (ortholog); complement component C1q complex binding (ortholog); INVOLVED IN cytosolic ribosome assembly (ortholog); mitochondrial RNA catabolic process (ortholog); negative regulation of defense response to virus (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); combined oxidative phosphorylation deficiency 33 (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955467 10788142 10792272 - 102027161 AGCD01051583;GBDJ01090000;GBDK01129135;XM_013522096 XP_013377550 MODEL 8730601 pseudo LOC102030566 sorting nexin-30-like NW_004955437 13048671 13052499 + 102030566 AGCD01034639 MODEL 8729335 pseudo LOC102028096 60S ribosomal protein L23-like NW_004955490 2072613 2073031 - 102028096 AGCD01060127 MODEL 10335273 ncrna LOC106148259 uncharacterized LOC106148259 NW_004955418 27430611 27437888 + 106148259 AGCD01019409;AGCD01019410;GBDK01141059;XR_001233538 MODEL 8971914 pseudo LOC102018982 probable ribonuclease ZC3H12C pseudogene NW_004955543 2792081 2793759 - 102018982 AGCD01071662 MODEL 8699520 trna Trnae-uuc transfer RNA glutamic acid (anticodon UUC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955518;NW_004955533;NW_004955404;NW_004955468;NW_004955467 2739880;3278389;51044487;13117506;8514521 2739951;3278460;51044558;13117577;8514592 -;+;-;+;+ 101978830 AGCD01004542;AGCD01051452;AGCD01052199;AGCD01067784;AGCD01070411 MODEL 8989772 protein-coding Rcan1 regulator of calcineurin 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein phosphatase inhibitor activity (ortholog); INVOLVED IN calcineurin-NFAT signaling cascade (ortholog); locomotion involved in locomotory behavior (ortholog); negative regulation of calcineurin-NFAT signaling cascade (ortholog); PARTICIPATES IN calcineurin signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Cardiomegaly (ortholog); congenital heart disease (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955407 33873427 33951762 - 102027814 AGCD01007714;AGCD01007715;GBBH01172918;XM_005375706 XP_005375763 MODEL 8734909 protein-coding LOC102007157 hemoglobin subunit alpha-3-like NW_004955442 17010737 17011588 - 102007157 AGCD01037931;GBDI01342197;XM_005391673 XP_005391730 MODEL 8807755 protein-coding Sostdc1 sclerostin domain containing 1 ENCODES a protein that exhibits BMP binding (ortholog); BMP receptor activity (ortholog); INVOLVED IN hair follicle morphogenesis (ortholog); mammary gland bud morphogenesis (ortholog); negative regulation of BMP signaling pathway (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; Wnt signaling, canonical pathway; FOUND IN extracellular region (ortholog) NW_004955410 19657805 19662121 - 102022057 AGCD01011027;GBDI01025966;XM_005377334 XP_005377391 MODEL 8800572 protein-coding Pcna proliferating cell nuclear antigen ENCODES a protein that exhibits chromatin binding (ortholog); damaged DNA binding (ortholog); dinucleotide insertion or deletion binding (ortholog); INVOLVED IN base-excision repair, gap-filling (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to UV (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH adenocarcinoma (ortholog); alcohol-associated liver disease (ortholog); Ataxia Telangiectasia Like Disorder (ortholog); FOUND IN centrosome (ortholog); chromatin (ortholog); cyclin-dependent protein kinase holoenzyme complex (ortholog) NW_004955415 15744601 15748910 - 102010995 AGCD01016356;GBCE01030395;XM_005380828 XP_005380885 MODEL 9049961 protein-coding Peg3 paternally expressed 3 INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of gene expression (ortholog); ASSOCIATED WITH cholangiocarcinoma (ortholog); Parasitic Liver Diseases (ortholog); FOUND IN autophagosome (ortholog); nucleus (ortholog) NW_004955567 85913 96236 + 102019214 AGCD01074378;AGCD01074379;AGCD01074380;GBBH01139572;GBCE01188438;XM_013509239 XP_013364693 MODEL 39131709 snorna SNORA71C Small nucleolar RNA SNORA71 8761709 protein-coding Sfxn5 sideroflexin 5 ENCODES a protein that exhibits citrate transmembrane transporter activity (ortholog); INVOLVED IN citrate transport (ortholog); positive regulation of cold-induced thermogenesis (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955424 12545985 12659238 + 102020027 AGCD01024614;AGCD01024615;AGCD01024616;AGCD01024617;GBCE01013411;XM_005385576;XM_005385577;XM_005385578;XM_013514690 XP_005385633;XP_005385634;XP_005385635;XP_013370144 MODEL 8919893 protein-coding Traip TRAF interacting protein ENCODES a protein that exhibits identical protein binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN DNA damage response (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of interferon-beta production (ortholog); ASSOCIATED WITH Dwarfism (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955532 1725608 1746690 - 102020483 AGCD01070200;GBDF01236147;XM_005410226 XP_005410283 MODEL 8782991 protein-coding Psca prostate stem cell antigen ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); INVOLVED IN negative regulation of ERK1 and ERK2 cascade (ortholog); regulation of neurotransmitter receptor activity (ortholog); ASSOCIATED WITH duodenal ulcer (ortholog); Helicobacter Infections (ortholog); linitis plastica (ortholog); FOUND IN plasma membrane (ortholog) NW_004955454 1425255 1429786 + 102019023 AGCD01044968;AGCD01044969;GBDK01168603;XM_005395732 XP_005395789 MODEL 8724001 pseudo LOC102010932 olfactory receptor 10AG1-like NW_004955511 901202 903998 - 102010932 AGCD01066346 MODEL 8906918 protein-coding LOC102005692 myosin-8 NW_004955467 6760351 6787249 + 102005692 AGCD01051422;AGCD01051423;GBBH01072423;GBCB01079090;XM_013522113 XP_013377567 MODEL 8988755 pseudo LOC102027421 ribosome biogenesis protein NSA2 homolog pseudogene NW_004955497 5817972 5818843 - 102027421 AGCD01062615 MODEL 8950035 protein-coding Smu1 SMU1 DNA replication regulator and spliceosomal factor INVOLVED IN mRNA splicing, via spliceosome (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); U2-type precatalytic spliceosome (ortholog) NW_004955472 2570248 2600551 + 102011650 AGCD01053474;AGCD01053475;AGCD01053476;AGCD01053477;AGCD01053478;GBCQ01041948;GBDF01050088;XM_005401109 XP_005401166 MODEL 8756219 ncrna LOC102010568 uncharacterized LOC102010568 NW_004955413 250256 256400 + 102010568 AGCD01013452;AGCD01013453;GBDF01303978;XR_260042 MODEL 8802923 pseudo LOC102011311 methionine aminopeptidase 2 pseudogene NW_004955416 12398435 12418557 - 102011311 AGCD01017205;AGCD01017206 MODEL 8895939 protein-coding Slc9a4 solute carrier family 9 member A4 ENCODES a protein that exhibits sodium:proton antiporter activity (ortholog); INVOLVED IN epithelial cell development (ortholog); gastric acid secretion (ortholog); transepithelial ammonium transport (ortholog); ASSOCIATED WITH Acidoses (ortholog); aortic dissection (ortholog); FOUND IN basolateral plasma membrane (ortholog); zymogen granule membrane (ortholog) NW_004955470 7936677 7989946 + 102021871 AGCD01052816;GBDK01123983;XM_005400773 XP_005400830 MODEL 39131348 protein-coding RAP2B RAP2B, member of RAS onco family 8720353 pseudo LOC102028097 cyclin-dependent kinase 4 pseudogene NW_004955421 3868940 3869860 - 102028097 AGCD01021671 MODEL 8805716 protein-coding Tk1 thymidine kinase 1 ENCODES a protein that exhibits identical protein binding (ortholog); thymidine kinase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN digestive tract development (ortholog); DNA synthesis involved in mitotic DNA replication (ortholog); fetal process involved in parturition (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; dihydropyrimidinase deficiency pathway; mitochondrial neurogastrointestinal encephalopathy syndrome pathway; ASSOCIATED WITH Animal Disease Models (ortholog); breast cancer (ortholog); cervix carcinoma (ortholog) NW_004955506 4379830 4390729 + 102008876 AGCD01065337;GBDK01117779;XM_005407382;XM_005407383 XP_005407439;XP_005407440 MODEL 8901565 protein-coding Rnaset2 ribonuclease T2 ENCODES a protein that exhibits ribonuclease T2 activity (ortholog); INVOLVED IN innate immune response (ortholog); RNA catabolic process (ortholog); ASSOCIATED WITH brain disease (ortholog); colon adenocarcinoma (ortholog); colon cancer (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog); extracellular region (ortholog); lysosomal lumen (ortholog) NW_004955439 15098210 15122015 + 102024851 AGCD01036000;GBBH01032042;XM_005390648;XM_013517408 XP_005390705;XP_013372862 MODEL 8907597 pseudo LOC102006780 serine/threonine-protein phosphatase CPPED1 pseudogene NW_004955484 8142928 8153116 + 102006780 AGCD01058371 MODEL 8957674 pseudo LOC102024612 afadin- and alpha-actinin-binding protein pseudogene NW_004955543 1710564 1712276 - 102024612 AGCD01071628 MODEL 8923499 protein-coding Ptpn13 protein tyrosine phosphatase non-receptor type 13 ENCODES a protein that exhibits phosphatidylinositol 3-kinase regulatory subunit binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN cellular response to toxic substance (ortholog); negative regulation of excitatory synapse assembly (ortholog); negative regulation of protein phosphorylation (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH breast cancer (ortholog); colon cancer (ortholog); colorectal cancer (ortholog); FOUND IN cell body (ortholog); cytoplasm (ortholog); lamellipodium (ortholog) NW_004955474 2988109 3140520 - 102019164 AGCD01054318;AGCD01054319;AGCD01054320;AGCD01054321;AGCD01054322;GBDI01182369;XM_005401347;XM_005401348;XM_005401349;XM_005401354;XM_013502736;XM_013502737;XM_013502738;XM_013502739;XM_013502740;XM_013502741;XM_013502742;XM_013502743;XM_013502744 XP_005401404;XP_005401405;XP_005401406;XP_005401411;XP_013358190;XP_013358191;XP_013358192;XP_013358193;XP_013358194;XP_013358195;XP_013358196;XP_013358197;XP_013358198 MODEL 39133378 snrna U4 U4 spliceosomal RNA 8955599 protein-coding LOC102028749 solute carrier family 7 member 13-like NW_004955417 2944341 2988408 + 102028749 AGCD01017897;AGCD01017898;AGCD01017899;GBCQ01002404;XM_005381733 XP_005381790 MODEL 8977173 ncrna LOC102021898 uncharacterized LOC102021898 NW_004955425 24681489 24694908 + 102021898 AGCD01025892;GBDF01146962;XR_001234305;XR_261168 MODEL 8741932 ncrna LOC102026434 uncharacterized LOC102026434 NW_004955488 5465790 5472200 - 102026434 AGCD01059623;GBDF01070404;XR_264001 MODEL 9031869 protein-coding LOC102017848 retinol dehydrogenase 16-like NW_004955458 4717769 4736029 - 102017848 AGCD01047433;AGCD01047434;AGCD01047435;AGCD01047436;GBDJ01117348;XM_005397335;XM_013520789 XP_005397392;XP_013376243 MODEL 8942369 protein-coding LOC102019384 uncharacterized LOC102019384 NW_004955470 548231 553573 - 102019384 AGCD01052614;XM_013522687 XP_013378141 MODEL 8948111 protein-coding Slc25a1 solute carrier family 25 member 1 ENCODES a protein that exhibits citrate secondary active transmembrane transporter activity (ortholog); citrate:succinate antiporter activity (ortholog); tricarboxylic acid transmembrane transporter activity (ortholog); INVOLVED IN mitochondrial citrate transmembrane transport (ortholog); negative regulation of ferroptosis (ortholog); ASSOCIATED WITH 2-hydroxyglutaric aciduria (ortholog); combined D-2- and L-2-hydroxyglutaric aciduria (ortholog); Congenital Myasthenic Syndrome 23 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955442 18804319 18807353 + 102011484 AGCD01038020;GBCE01076067;GBDJ01089948;XM_005391786 XP_005391843 MODEL 9001125 pseudo LOC102023620 60S ribosomal protein L23a pseudogene NW_004955507 3512576 3513217 + 102023620 AGCD01065629 MODEL 10255388 ncrna LOC106147165 uncharacterized LOC106147165 NW_004955524 2661951 2663691 - 106147165 AGCD01068827;AGCD01068828;GBBH01171560;XR_001231945 MODEL 8857967 protein-coding Prkdc protein kinase, DNA-activated, catalytic subunit ENCODES a protein that exhibits DNA-dependent protein kinase activity (ortholog); double-stranded DNA binding (ortholog); enzyme binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); B cell lineage commitment (ortholog); brain development (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Brain Hypoxia-Ischemia (ortholog); breast cancer (ortholog); FOUND IN chromatin (ortholog); DNA-dependent protein kinase complex (ortholog); DNA-dependent protein kinase-DNA ligase 4 complex (ortholog) NW_004955454 7733697 7890896 - 102021844 AGCD01045304;AGCD01045305;AGCD01045306;AGCD01045307;AGCD01045308;AGCD01045309;GBDJ01356019;XM_005396037;XM_013520201;XM_013520202 XP_005396094;XP_013375655;XP_013375656 MODEL 8803414 protein-coding Sema4g semaphorin 4G NW_004955485 9201078 9211100 - 102004936 AGCD01058752;GBBH01006973;GBCQ01000916;XM_005403895 XP_005403952 MODEL 8743671 protein-coding LOC102015939 apolipoprotein L3-like NW_004955413 22651953 22664939 + 102015939 AGCD01014311;AGCD01014312;GBDK01241031;XM_005379149;XM_005379150;XM_005379151;XM_005379152;XM_013511671;XM_013511672 XP_005379206;XP_005379207;XP_005379208;XP_005379209;XP_013367125;XP_013367126 MODEL 39131387 protein-coding WFDC8 WAP four-disulfide core domain 8 8864182 protein-coding Ppp1r21 protein phosphatase 1 regulatory subunit 21 ENCODES a protein that exhibits mRNA binding (ortholog); protein-macromolecule adaptor activity (ortholog); RNA binding (ortholog); INVOLVED IN regulation of intracellular mRNA localization (ortholog); ASSOCIATED WITH genetic disease (ortholog); NEURODEVELOPMENTAL DISORDER WITH HYPOTONIA, FACIAL DYSMORPHISM, AND BRAIN ABNORMALITIES (ortholog); FOUND IN early endosome (ortholog); early endosome membrane (ortholog) NW_004955441 15002126 15061967 + 102018988 AGCD01037238;AGCD01037239;AGCD01037240;AGCD01037241;GBDI01081035;XM_013517520 XP_013372974 MODEL 9005988 protein-coding Lmntd1 lamin tail domain containing 1 INVOLVED IN cell population proliferation (ortholog); ASSOCIATED WITH Lung Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nuclear envelope (ortholog); nucleus (ortholog) NW_004955413 20508574 20771188 - 102030620 AGCD01014217;AGCD01014218;AGCD01014219;AGCD01014220;AGCD01014221;AGCD01014222;AGCD01014223;AGCD01014224;AGCD01014225;AGCD01014226;AGCD01014227;AGCD01014228;AGCD01014229;AGCD01014230;GBDF01210105;XM_005379102;XM_005379104;XM_005379105;XM_013511519;XM_013511520;XM_013511521 XP_005379159;XP_005379161;XP_005379162;XP_013366973;XP_013366974;XP_013366975 MODEL 8726944 protein-coding Rab28 RAB28, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); cone dystrophy (ortholog); cone-rod dystrophy (ortholog); FOUND IN ciliary basal body (ortholog); ciliary rootlet (ortholog); cytoplasm (ortholog) NW_004955480 10220811 10374021 + 102021555 AGCD01056760;AGCD01056761;AGCD01056762;AGCD01056763;AGCD01056764;AGCD01056765;AGCD01056766;GBCE01031034;XM_005402540;XM_005402541;XM_013503323;XM_013503324;XM_013503325;XM_013503326;XR_001230910 XP_005402597;XP_005402598;XP_013358777;XP_013358778;XP_013358779;XP_013358780 MODEL 8871370 protein-coding Sowaha sosondowah ankyrin repeat domain family member A NW_004955408 4187724 4189059 + 102015929 AGCD01008091;GBCQ01088487;GBDI01055419;XM_005376574 XP_005376631 MODEL 39131714 snorna SNORA71E Small nucleolar RNA SNORA71 8914562 protein-coding Sae1 SUMO1 activating enzyme subunit 1 ENCODES a protein that exhibits ATP-dependent protein binding (ortholog); protein heterodimerization activity (ortholog); small protein activating enzyme binding (ortholog); INVOLVED IN positive regulation of protein localization to mitochondrion (ortholog); positive regulation of protein sumoylation (ortholog); protein sumoylation (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); SUMO activating enzyme complex (ortholog) NW_004955574 1090446 1158266 + 102005089 AGCD01075153;AGCD01075154;AGCD01075155;AGCD01075156;AGCD01075157;AGCD01075158;GBDF01002543;XM_005413849 XP_005413906 MODEL 8816373 protein-coding LOC102003924 uncharacterized LOC102003924 NW_004955402 38979252 38993934 + 102003924 AGCD01000974;GBDF01101946;NM_001371756;XM_005373171;XM_013522414 NP_001358685;XP_005373228;XP_013377868 VALIDATED 8955668 protein-coding Slc9a5 solute carrier family 9 member A5 ENCODES a protein that exhibits arrestin family protein binding (ortholog); sodium:proton antiporter activity (ortholog); INVOLVED IN proton transmembrane transport (ortholog); regulation of intracellular pH (ortholog); sodium ion transmembrane transport (ortholog); ASSOCIATED WITH end stage renal disease (ortholog); FOUND IN focal adhesion (ortholog); neuron spine (ortholog); plasma membrane (ortholog) NW_004955484 9359468 9379959 - 102008225 AGCD01058415;GBDJ01263485;XM_005403668;XM_005403669;XM_013503897;XM_013503898;XM_013503899;XM_013503900;XM_013503901;XM_013503902;XM_013503903 XP_005403725;XP_005403726;XP_013359351;XP_013359352;XP_013359353;XP_013359354;XP_013359355;XP_013359356;XP_013359357 MODEL 10062672 ncrna LOC106150002 uncharacterized LOC106150002 NW_004955460 8243549 8250894 - 106150002 AGCD01048513;XR_001236512 MODEL 8900453 pseudo LOC102026071 glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial pseudogene NW_004955405 29962101 29963733 - 102026071 AGCD01005263 MODEL 8820360 protein-coding LOC102008652 heterogeneous nuclear ribonucleoprotein A1-like NW_004955514 3637451 3647575 + 102008652 AGCD01067102;XM_013506747 XP_013362201 MODEL 8964911 pseudo LOC102010935 histone-binding protein RBBP4 pseudogene NW_004955515 5132224 5133419 - 102010935 AGCD01067339 MODEL 8833789 protein-coding Ptpn14 protein tyrosine phosphatase non-receptor type 14 ENCODES a protein that exhibits protein tyrosine phosphatase activity (ortholog); receptor tyrosine kinase binding (ortholog); transcription coregulator activity (ortholog); INVOLVED IN lymphangiogenesis (ortholog); negative regulation of cell population proliferation (ortholog); regulation of protein export from nucleus (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Choanal Atresia and Lymphedema (ortholog); esophageal atresia/tracheoesophageal fistula (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955406 3368833 3463170 + 102012155 AGCD01005671;AGCD01005672;GBCE01077552;XM_005374719;XM_013519964 XP_005374776;XP_013375418 MODEL 8787561 ncrna LOC102030568 uncharacterized LOC102030568 NW_004955438 9611117 9640854 + 102030568 AGCD01035182;XR_261922 MODEL 8889065 protein-coding Psd pleckstrin and Sec7 domain containing ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN maintenance of postsynaptic density structure (ortholog); neuron differentiation (ortholog); neuron projection development (ortholog); FOUND IN cleavage furrow (ortholog); dendritic spine (ortholog); glutamatergic synapse (ortholog) NW_004955485 7979654 7994662 + 102017457 AGCD01058685;AGCD01058686;GBDJ01009628;XM_005403841;XM_005403842;XM_005403843;XM_013504081 XP_005403898;XP_005403899;XP_005403900;XP_013359535 MODEL 9018997 protein-coding LOC102018989 olfactory receptor 11H7-like NW_004955550 983331 984314 + 102018989 AGCD01072535;XM_005412041 XP_005412098 MODEL 8751503 protein-coding LOC102027423 melanoma-associated antigen 8-like NW_004955498 5405512 5406208 + 102027423 AGCD01063075;XM_013505528 XP_013360982 MODEL 8957766 protein-coding Smug1 single-strand-selective monofunctional uracil-DNA glycosylase 1 ENCODES a protein that exhibits DNA N-glycosylase activity (ortholog); identical protein binding (ortholog); oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity (ortholog); INVOLVED IN base-excision repair (ortholog); DNA repair (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN fibrillar center (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955458 1432988 1449019 - 102030502 AGCD01047179;AGCD01047180;GBCQ01129502;XM_005397208;XM_013521018;XM_013521019 XP_005397265;XP_013376472;XP_013376473 MODEL 9003980 protein-coding Epb41l4a erythrocyte membrane protein band 4.1 like 4A ASSOCIATED WITH Failure to Thrive (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955418 2876345 3097365 + 102013606 AGCD01018777;AGCD01018778;AGCD01018779;GBCQ01099747;GBDF01195481;XM_005382155;XM_005382156;XM_005382157;XM_013513019 XP_005382212;XP_005382213;XP_005382214;XP_013368473 MODEL 8825686 pseudo LOC102010572 methionine adenosyltransferase 2 subunit beta pseudogene NW_004955467 10161772 10163152 + 102010572 AGCD01051547 MODEL 8853456 protein-coding Rap2b RAP2B, member of RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN establishment of endothelial intestinal barrier (ortholog); negative regulation of cell migration (ortholog); platelet activation (ortholog); FOUND IN bicellular tight junction (ortholog); cell-cell contact zone (ortholog); cytosol (ortholog) NW_004955448 4668477 4671629 + 102011822 AGCD01041350;AGCD01041351;GBCE01118185;GBDJ01276338;XM_005393055 XP_005393112 MODEL 9042883 protein-coding Rcan2 regulator of calcineurin 2 INVOLVED IN calcineurin-NFAT signaling cascade (ortholog); locomotion involved in locomotory behavior (ortholog); Notch signaling pathway (ortholog); ASSOCIATED WITH metabolic dysfunction-associated steatotic liver disease (ortholog) NW_004955437 11243195 11406488 - 102004320 AGCD01034572;AGCD01034573;AGCD01034574;GBDF01044432;XM_005389848;XM_005389850;XM_005389852;XM_005389853;XM_005389854;XM_005389855 XP_005389905;XP_005389907;XP_005389909;XP_005389910;XP_005389911;XP_005389912 MODEL 8802824 protein-coding LOC102007158 histone-binding protein RBBP7-like NW_004955558 643112 644737 + 102007158 AGCD01073381;XM_013508855 XP_013364309 MODEL 8928336 protein-coding Pcnp PEST proteolytic signal containing nuclear protein INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); protein ubiquitination (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955427 3142340 3162172 + 102029204 AGCD01026918;AGCD01026919;AGCD01026920;AGCD01026921;GBCQ01005265;GBDK01127980;XM_005386324 XP_005386381 MODEL 9017153 pseudo LOC102009783 60S ribosomal protein L23a pseudogene NW_004955402 42724840 42797870 + 102009783 AGCD01001045;AGCD01001046;AGCD01001047;AGCD01001048;AGCD01001049;XR_259084 MODEL 8982208 protein-coding Plod1 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 ENCODES a protein that exhibits ferrous iron binding (ortholog); L-ascorbic acid binding (ortholog); peptide binding (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); collagen biosynthetic process (ortholog); epidermis development (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); cryptorchidism (ortholog); FOUND IN catalytic complex (ortholog) NW_004955486 1967771 1990561 - 102003972 AGCD01058976;AGCD01058977;GBCB01022681;GBDJ01076519;XM_005403978 XP_005404035 MODEL 9049103 protein-coding Peli1 pellino E3 ubiquitin protein ligase 1 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); ubiquitin-ubiquitin ligase activity (ortholog); INVOLVED IN negative regulation of necroptotic process (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); negative regulation of T cell activation (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); colorectal cancer (ortholog); Drug-Related Side Effects and Adverse Reactions (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955424 20212077 20263761 + 102009519 AGCD01024846;AGCD01024847;GBDF01191004;XM_005385703;XM_005385704 XP_005385760;XP_005385761 MODEL 8754136 protein-coding Sgca sarcoglycan alpha INVOLVED IN response to denervation involved in regulation of muscle adaptation (ortholog); skeletal muscle tissue regeneration (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrial fibrillation (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); FOUND IN cell-cell junction (ortholog); dystroglycan complex (ortholog); membrane raft (ortholog) NW_004955451 11490891 11501618 - 102012394 AGCD01043355;AGCD01043356;GBCQ01015636;GBDI01122074;XM_013519105 XP_013374559 MODEL 8844456 protein-coding Rnd1 Rho family GTPase 1 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN actin filament organization (ortholog); negative regulation of cell adhesion (ortholog); neuron remodeling (ortholog); FOUND IN actin cytoskeleton (ortholog); adherens junction (ortholog); plasma membrane (ortholog) NW_004955500 7703461 7709363 - 102027878 AGCD01063941;AGCD01063942;GBCE01123466;GBDK01433841;XM_013505644 XP_013361098 MODEL 8844424 ncrna LOC102024614 uncharacterized LOC102024614 NW_004955439 15058548 15077326 + 102024614 AGCD01035998;AGCD01035999;GBDF01042735;XR_261992 MODEL 39133379 snrna U4 U4 spliceosomal RNA 9000065 pseudo LOC102005693 heterogeneous nuclear ribonucleoprotein A3 pseudogene NW_004955413 21622743 21623904 - 102005693 AGCD01014258 MODEL 8758135 protein-coding C1qc complement C1q C chain ENCODES a protein that exhibits IgG binding (ortholog); IgM binding (ortholog); phosphatidylserine binding (ortholog); INVOLVED IN complement activation, classical pathway (ortholog); negative regulation of granulocyte differentiation (ortholog); negative regulation of macrophage differentiation (ortholog); ASSOCIATED WITH C1q Deficiency (ortholog); C1q Deficiency 3 (ortholog); COVID-19 (ortholog); FOUND IN cell surface (ortholog); complement component C1 complex (ortholog); complement component C1q complex (ortholog) NW_004955452 2759079 2762522 + 102009794 AGCD01043903;GBDI01004925;XM_005394744 XP_005394801 MODEL 8864422 protein-coding Safb scaffold attachment factor B ENCODES a protein that exhibits chromatin binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN estrogen receptor signaling pathway (ortholog); hormone metabolic process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN midbody (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955495 3743673 3775073 - 102026440 AGCD01061879;GBDK01009759;XM_005405765;XM_005405766 XP_005405822;XP_005405823 MODEL 10277319 ncrna LOC106150003 uncharacterized LOC106150003 NW_004955460 8104434 8107046 + 106150003 AGCD01048512;XR_001236513 MODEL 8924826 trna Trnaf-aaa transfer RNA phenylalanine (anticodon AAA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955465 13258353 13258434 + 101978786 AGCD01050595 MODEL 10178240 protein-coding LOC106148260 translation initiation factor IF-2-like NW_004955418 6311728 6313235 - 106148260 AGCD01018874;GBBH01192621;GBDK01051804;XM_013513028 XP_013368482 MODEL 8935512 ncrna LOC102028099 uncharacterized LOC102028099 NW_004955422 4331533 4342692 - 102028099 AGCD01022541;GBDF01192310;XR_260851 MODEL 8716690 protein-coding LOC102011313 uncharacterized LOC102011313 NW_004955417 26374063 26401589 - 102011313 AGCD01018507;AGCD01018508;AGCD01018509;GBBH01003039;XM_005381923;XM_013512715;XM_013512716;XM_013512717;XM_013512718;XM_013512719;XM_013512720;XM_013512721;XM_013512722;XM_013512723;XM_013512724;XM_013512725;XM_013512726;XM_013512727;XM_013512728;XM_013512729;XM_013512730;XM_013512731;XM_013512732;XM_013512734;XR_001233417;XR_001233418 XP_005381980;XP_013368169;XP_013368170;XP_013368171;XP_013368172;XP_013368173;XP_013368174;XP_013368175;XP_013368176;XP_013368177;XP_013368178;XP_013368179;XP_013368180;XP_013368181;XP_013368182;XP_013368183;XP_013368184;XP_013368185;XP_013368186;XP_013368188 MODEL 8758778 pseudo LOC102006781 calmodulin pseudogene NW_004955420 5731109 5732180 - 102006781 AGCD01020679;XM_005383023 MODEL 8959313 ncrna LOC102012948 uncharacterized LOC102012948 NW_004955469 10456258 10462046 - 102012948 AGCD01052535;GBCE01121126;XR_001236982;XR_001236983;XR_263447 MODEL 8963808 ncrna LOC102028751 uncharacterized LOC102028751 NW_004955418 21360211 21370271 + 102028751 AGCD01019267;GBDF01111321;XR_260577 MODEL 8782605 protein-coding Trak1 trafficking kinesin protein 1 ENCODES a protein that exhibits GABA receptor binding (ortholog); TPR domain binding (ortholog); INVOLVED IN axonal transport of mitochondrion (ortholog); dendrite morphogenesis (ortholog); endosome to lysosome transport (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 68 (ortholog); genetic disease (ortholog); schizophrenia (ortholog); FOUND IN axonal growth cone (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955420 28457179 28547585 - 102003973 AGCD01021478;AGCD01021479;AGCD01021480;GBBH01163772;XM_005383550;XM_005383551;XM_005383552;XM_005383553;XM_005383562;XM_013513471;XM_013513472 XP_005383607;XP_005383608;XP_005383609;XP_005383610;XP_005383619;XP_013368925;XP_013368926 MODEL 8866839 ncrna LOC102029165 uncharacterized LOC102029165 NW_004955467 6412774 6437829 - 102029165 AGCD01051413;GBDF01176156;XR_001236828;XR_263337 MODEL 8890241 protein-coding Rgs8 regulator of G protein signaling 8 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GTPase activator activity (ortholog); INVOLVED IN G protein-coupled acetylcholine receptor signaling pathway (ortholog); positive regulation of GTPase activity (ortholog); regulation of dopamine receptor signaling pathway (ortholog); ASSOCIATED WITH Experimental Seizures (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); dendrite (ortholog); membrane (ortholog) NW_004955406 21482810 21523518 - 102018888 AGCD01006128;AGCD01006129;AGCD01006130;GBDF01058403;XM_005375009;XM_005375010;XM_005375011;XM_013521471;XM_013521476 XP_005375066;XP_005375067;XP_005375068;XP_013376925;XP_013376930 MODEL 9036102 protein-coding Rab29 RAB29, member RAS oncogene family ENCODES a protein that exhibits dynein complex binding (ortholog); G protein activity (ortholog); GDP binding (ortholog); INVOLVED IN cellular detoxification (ortholog); cilium assembly (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); FOUND IN cis-Golgi network (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955406 41452733 41468467 - 102012400 AGCD01006684;GBDI01312292;XM_005375371;XM_005375372;XM_005375373;XM_013522973;XM_013522978;XM_013522980;XM_013522983;XM_013522990 XP_005375428;XP_005375429;XP_005375430;XP_013378427;XP_013378432;XP_013378434;XP_013378437;XP_013378444 MODEL 8873394 protein-coding LOC102026439 lysophosphatidylcholine acyltransferase 2B-like NW_004955423 2384617 2388073 - 102026439 AGCD01023472;GBDF01087349;XM_013514538 XP_013369992 MODEL 9049328 pseudo LOC102019385 signal peptide peptidase-like 2A pseudogene NW_004955472 8166187 8167552 - 102019385 AGCD01053640 MODEL 8722318 protein-coding Slc25a10 solute carrier family 25 member 10 ENCODES a protein that exhibits dicarboxylic acid transmembrane transporter activity (ortholog); malate transmembrane transporter activity (ortholog); phosphate transmembrane transporter activity (ortholog); INVOLVED IN glyceraldehyde-3-phosphate biosynthetic process (ortholog); malate transport (ortholog); phosphate ion transport (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955506 1389798 1396670 - 102028111 AGCD01065262;GBCQ01002900;XM_005407261 XP_005407318 MODEL 8859322 protein-coding LOC102011799 uncharacterized LOC102011799 NW_004955524 3971442 3983883 + 102011799 AGCD01068941;GBDK01315273;XM_005409534;XM_013507300;XM_013507301 XP_005409591;XP_013362754;XP_013362755 MODEL 10100602 protein-coding LOC106147166 microtubule-associated protein 1S-like NW_004955524 703117 704207 - 106147166 AGCD01068694;GBCE01098302;GBCQ01123891;XM_013507234 XP_013362688 MODEL 8789174 pseudo LOC102008653 dual specificity mitogen-activated protein kinase kinase 1 pseudogene NW_004955515 3622654 3623565 - 102008653 AGCD01067294 MODEL 8986116 pseudo LOC102010940 T-complex protein 1 subunit zeta-like NW_004955523 256492 260604 - 102010940 AGCD01068440 MODEL 8893873 protein-coding LOC102015942 palmitoyltransferase ZDHHC3-like NW_004955413 32853796 32854516 + 102015942 AGCD01014647;GBDF01053989;XM_005379523 XP_005379580 MODEL 9005202 protein-coding Wfdc8 WAP four-disulfide core domain 8 NW_004955445 11666987 11682180 + 102030679 AGCD01039712;XM_013518242 XP_013373696 MODEL 9056772 protein-coding LOC102023621 aldo-keto reductase family 1 member C3 homolog NW_004955429 197972 335424 - 102023621 AGCD01028327;AGCD01028328;AGCD01028329;AGCD01028330;AGCD01028331;AGCD01028332;AGCD01028333;AGCD01028334;AGCD01028335;AGCD01028336;AGCD01028337;AGCD01028338;AGCD01028339;AGCD01028340;AGCD01028341;GBDK01017488;XM_005386857;XM_005386858;XM_013515394;XM_013515395 XP_005386914;XP_005386915;XP_013370848;XP_013370849 MODEL 8764122 protein-coding Ppp1r26 protein phosphatase 1 regulatory subunit 26 FOUND IN nucleoplasm (ortholog) NW_004955513 4039819 4046482 + 102029316 AGCD01066914;GBCE01037443;XM_005408477;XM_005408478 XP_005408534;XP_005408535 MODEL 8847566 protein-coding Tk2 thymidine kinase 2 ENCODES a protein that exhibits deoxycytidine kinase activity (ortholog); thymidine kinase activity (ortholog); INVOLVED IN deoxycytidine metabolic process (ortholog); deoxyribonucleotide metabolic process (ortholog); mitochondrial DNA metabolic process (ortholog); ASSOCIATED WITH autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 3 (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955433 23075930 23106281 - 102019943 AGCD01031952;GBCB01120791;XM_005388462;XM_005388463;XM_005388466;XM_013516240;XM_013516241;XM_013516242 XP_005388519;XP_005388520;XP_005388523;XP_013371694;XP_013371695;XP_013371696 MODEL 9033306 protein-coding Sema5a semaphorin 5A ENCODES a protein that exhibits axon guidance receptor activity (ortholog); chondroitin sulfate proteoglycan binding (ortholog); heparan sulfate proteoglycan binding (ortholog); INVOLVED IN axon extension (ortholog); axon guidance (ortholog); axonal fasciculation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Charcot-Marie-Tooth disease (ortholog); intellectual disability (ortholog); FOUND IN membrane (ortholog) NW_004955504 6343747 6691945 - 102019086 AGCD01064921;AGCD01064922;AGCD01064923;AGCD01064924;AGCD01064925;AGCD01064926;AGCD01064927;AGCD01064928;AGCD01064929;GBCQ01101626;XM_005407077;XM_013505908 XP_005407134;XP_013361362 MODEL 8813694 protein-coding Lmntd2 lamin tail domain containing 2 INVOLVED IN positive regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog) NW_004955476 11487918 11493281 + 102018826 AGCD01055460;GBDK01360050;XM_005401846;XM_005401847;XM_005401848;XM_005401849;XM_005401850;XM_005401851;XM_005401852;XM_005401853;XM_005401854;XM_005401855;XM_005401856;XM_005401857;XM_005401858;XM_005401859;XM_013502920;XM_013502921 XP_005401903;XP_005401904;XP_005401905;XP_005401906;XP_005401907;XP_005401908;XP_005401909;XP_005401910;XP_005401911;XP_005401912;XP_005401913;XP_005401914;XP_005401915;XP_005401916;XP_013358374;XP_013358375 MODEL 8844557 protein-coding Epb41l4b erythrocyte membrane protein band 4.1 like 4B INVOLVED IN actomyosin structure organization (ortholog); positive regulation of cell adhesion (ortholog); positive regulation of gene expression (ortholog); FOUND IN apical part of cell (ortholog); cytoplasm (ortholog) NW_004955419 17686096 17821884 + 102003658 AGCD01020161;AGCD01020162;AGCD01020163;AGCD01020164;GBCE01117906;GBCE01117907;XM_013513219;XM_013513220 XP_013368673;XP_013368674 MODEL 39132074 snorna SNORA72 Small nucleolar RNA SNORA72 8812103 protein-coding Sowahb sosondowah ankyrin repeat domain family member B NW_004955433 1537658 1541574 - 102015040 AGCD01031361;GBDI01052984;XM_005388187 XP_005388244 MODEL 8855587 protein-coding Slc9a6 solute carrier family 9 member A6 ENCODES a protein that exhibits identical protein binding (ortholog); potassium:proton antiporter activity (ortholog); sodium:proton antiporter activity (ortholog); INVOLVED IN axon extension (ortholog); brain-derived neurotrophic factor receptor signaling pathway (ortholog); dendrite extension (ortholog); PARTICIPATES IN angiotensin II signaling pathway via AT2 receptor; ASSOCIATED WITH astigmatism (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2A (ortholog); Christianson syndrome (ortholog); FOUND IN axon terminus (ortholog); axonal spine (ortholog); cytoplasmic vesicle (ortholog) NW_004955489 9020719 9078375 - 102016061 AGCD01060025;GBBH01035448;XM_005404600;XM_005404602 XP_005404657;XP_005404659 MODEL 8934368 ncrna LOC102026073 uncharacterized LOC102026073 NW_004955455 3432716 3456703 - 102026073 AGCD01045626;AGCD01045627;AGCD01045628;GBDF01086767;XR_262819;XR_262820 MODEL 8871222 protein-coding Sgcb sarcoglycan beta INVOLVED IN cardiac muscle cell development (ortholog); gene expression (ortholog); glucose homeostasis (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2E (ortholog); cardiomyopathy (ortholog); FOUND IN dystroglycan complex (ortholog); dystrophin-associated glycoprotein complex (ortholog); plasma membrane (ortholog) NW_004955447 18459562 18472367 + 102011377 AGCD01041174;AGCD01041175;GBDJ01180305;GBDK01317787;XM_013518513 XP_013373967 MODEL 8828474 protein-coding Peli2 pellino E3 ubiquitin protein ligase family member 2 ENCODES a protein that exhibits phosphorylation-dependent protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of cGAS/STING signaling pathway (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of MAPK cascade (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog) NW_004955466 10228101 10335129 + 102022065 AGCD01051062;AGCD01051063;AGCD01051064;GBDF01158128;XM_005399193 XP_005399250 MODEL 39133382 snrna U4 U4 spliceosomal RNA 8928725 pseudo LOC102018991 serine/threonine/tyrosine-interacting protein pseudogene NW_004955551 886953 887825 + 102018991 AGCD01072679 MODEL 8729488 protein-coding Psd2 pleckstrin and Sec7 domain containing 2 ASSOCIATED WITH pre-malignant neoplasm (ortholog); FOUND IN cleavage furrow (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955418 793960 848550 - 102011768 AGCD01018691;GBDF01281245;XM_005382051;XM_013512924;XM_013512925;XM_013512926;XM_013512927;XM_013512928 XP_005382108;XP_013368378;XP_013368379;XP_013368380;XP_013368381;XP_013368382 MODEL 9050765 pseudo LOC102027424 protein SET-like NW_004955424 18528906 18531951 + 102027424 AGCD01024785;AGCD01024786 MODEL 8952368 protein-coding Trak2 trafficking kinesin protein 2 ENCODES a protein that exhibits enzyme binding (ortholog); GABA receptor binding (ortholog); kinesin binding (ortholog); INVOLVED IN dendrite morphogenesis (ortholog); dendritic transport of mitochondrion (ortholog); endosome to lysosome transport (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN axonal growth cone (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955403 205372 261210 + 102020182 AGCD01001683;AGCD01001684;AGCD01001685;GBDK01185209;XM_005373197;XM_005373199;XM_005373200;XM_005373201;XM_013511713;XM_013511715 XP_005373254;XP_005373256;XP_005373257;XP_005373258;XP_013367167;XP_013367169 MODEL 8850563 protein-coding Prkg1 protein kinase cGMP-dependent 1 ENCODES a protein that exhibits calcium channel regulator activity (ortholog); cGMP binding (ortholog); cGMP-dependent protein kinase activity (ortholog); INVOLVED IN cell growth involved in cardiac muscle cell development (ortholog); cerebellum development (ortholog); collateral sprouting (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ASSOCIATED WITH allergic rhinitis (ortholog); amphetamine abuse (ortholog); connective tissue disease (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); Golgi apparatus (ortholog) NW_004955425 6176335 7335867 + 102005487 AGCD01025366;AGCD01025367;AGCD01025368;AGCD01025369;AGCD01025370;AGCD01025371;AGCD01025372;AGCD01025373;AGCD01025374;AGCD01025375;AGCD01025376;AGCD01025377;AGCD01025378;AGCD01025379;AGCD01025380;AGCD01025381;AGCD01025382;GBDK01040552;XM_005385905;XM_005385906 XP_005385962;XP_005385963 MODEL 8962666 ncrna LOC102010573 uncharacterized LOC102010573 NW_004955468 2472919 2491755 + 102010573 AGCD01051821;AGCD01051822;AGCD01051823;GBDF01158088;XR_263379 MODEL 8816969 pseudo LOC102028100 caspase-3-like NW_004955422 13367193 13368062 - 102028100 AGCD01022822 MODEL 8799794 ncrna LOC102007160 uncharacterized LOC102007160 NW_004955443 4405793 4414236 + 102007160 AGCD01038213;GBDF01080321;XR_262175 MODEL 9048278 protein-coding Rap2c RAP2C, member of RAS oncogene family ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN establishment of endothelial intestinal barrier (ortholog); negative regulation of cell migration (ortholog); positive regulation of protein autophosphorylation (ortholog); FOUND IN bicellular tight junction (ortholog); cell-cell contact zone (ortholog); cytoplasm (ortholog) NW_004955473 2709407 2723453 + 102028409 AGCD01053907;GBBH01011809;GBDF01235018;XM_005401215 XP_005401272 MODEL 10176095 ncrna LOC106148261 uncharacterized LOC106148261 NW_004955418 6215266 6229832 - 106148261 AGCD01018864;GBDK01371723;XR_001233539 MODEL 8887235 protein-coding Pcnt pericentrin INVOLVED IN brain morphogenesis (ortholog); camera-type eye development (ortholog); cerebellar cortex morphogenesis (ortholog); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); Down syndrome (ortholog); genetic disease (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955407 42735078 42835851 + 102019984 AGCD01007895;AGCD01007896;AGCD01007897;GBDF01085715;XM_013505781;XM_013505784;XM_013505789;XM_013505794;XM_013505798 XP_013361235;XP_013361238;XP_013361243;XP_013361248;XP_013361252 MODEL 8756018 protein-coding LOC102003925 protein FAM127A NW_004955602 174103 174639 - 102003925 AGCD01076766;GBCB01040403;XM_005414829 XP_005414886 MODEL 8724659 protein-coding LOC102009784 small proline-rich protein 2E NW_004955592 315272 316198 + 102009784 AGCD01076302;XM_005414611 XP_005414668 MODEL 8826056 protein-coding LOC102017852 mast cell protease 4-like NW_004955409 35817333 35819685 + 102017852 AGCD01010433;XM_005377176 XP_005377233 MODEL 8771470 protein-coding Tkfc triokinase and FMN cyclase ENCODES a protein that exhibits FAD-AMP lyase (cyclizing) activity (ortholog); glycerone kinase activity (ortholog); triokinase activity (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); carbohydrate phosphorylation (ortholog); fructose catabolic process to hydroxyacetone phosphate and glyceraldehyde-3-phosphate (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); inherited metabolic disorder (ortholog); Sengers syndrome (ortholog); FOUND IN cytosol (ortholog) NW_004955511 6200433 6235855 - 102017593 AGCD01066598;GBCE01135212;XM_005408164;XM_005408165;XM_005408166;XM_005408167;XM_005408168 XP_005408221;XP_005408222;XP_005408223;XP_005408224;XP_005408225 MODEL 8969950 ncrna LOC102005695 uncharacterized LOC102005695 NW_004955468 5827349 5829436 + 102005695 AGCD01051978;XR_263391 MODEL 10095788 ncrna LOC106150004 uncharacterized LOC106150004 NW_004955460 13302274 13310360 - 106150004 AGCD01048680;XR_001236518 MODEL 8818417 protein-coding Safb2 scaffold attachment factor B2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of androgen receptor signaling pathway (ortholog); Sertoli cell differentiation (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog) NW_004955495 3775301 3802642 + 102025921 AGCD01061879;AGCD01061880;AGCD01061881;GBBH01115695;GBDK01009747;XM_005405763 XP_005405820 MODEL 8726727 protein-coding Ptpn18 protein tyrosine phosphatase non-receptor type 18 ENCODES a protein that exhibits non-membrane spanning protein tyrosine phosphatase activity (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN blastocyst formation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955459 65191 90459 + 102012407 AGCD01047924;GBDK01194260;XM_005397542;XM_005397543;XM_005397544 XP_005397599;XP_005397600;XP_005397601 MODEL 8844251 ncrna LOC102019386 uncharacterized LOC102019386 NW_004955415 31794197 31797398 + 102019386 AGCD01016697;GBDF01178246;XR_001233216;XR_260331 MODEL 39133383 snrna U4 U4 spliceosomal RNA 8822143 ncrna LOC102021899 uncharacterized LOC102021899 NW_004955426 18018072 18050051 + 102021899 AGCD01026509;AGCD01026510;GBDF01014473;XR_261200 MODEL 8927359 ncrna LOC102010941 uncharacterized LOC102010941 NW_004955435 16643784 16657404 - 102010941 AGCD01033336;GBDF01056722;XR_261709 MODEL 8837231 protein-coding Rcan3 RCAN family member 3 ENCODES a protein that exhibits phosphatase binding (ortholog); troponin I binding (ortholog) NW_004955452 4285602 4313904 + 102028372 AGCD01043970;AGCD01043971;GBCE01108458;GBDJ01062277;XM_013519579 XP_013375033 MODEL 8793633 pseudo LOC102027429 hyaluronidase-2 pseudogene NW_004955504 6989164 6990488 - 102027429 AGCD01064933 MODEL 8921602 protein-coding Prkg2 protein kinase cGMP-dependent 2 ENCODES a protein that exhibits cGMP-dependent protein kinase activity (ortholog); identical protein binding (ortholog); mitogen-activated protein kinase binding (ortholog); INVOLVED IN circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); intracellular signal transduction (ortholog); ASSOCIATED WITH acromesomelic dysplasia 4 (ortholog); Dwarfism (ortholog); genetic disease (ortholog); FOUND IN nuclear membrane (ortholog); plasma membrane (ortholog) NW_004955433 5286594 5387571 - 102027779 AGCD01031498;GBDK01324335;XM_005388221;XM_005388222;XM_005388223;XM_013516090 XP_005388278;XP_005388279;XP_005388280;XP_013371544 MODEL 8845135 protein-coding Plod2 procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 ENCODES a protein that exhibits procollagen glucosyltransferase activity (ortholog); procollagen-lysine 5-dioxygenase activity (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); collagen biosynthetic process (ortholog); protein O-linked glycosylation (ortholog); ASSOCIATED WITH Bone Neoplasms (ortholog); Bruck syndrome (ortholog); Bruck Syndrome 2 (ortholog); FOUND IN cytoplasm (ortholog); rough endoplasmic reticulum membrane (ortholog) NW_004955474 11392163 11473918 + 102020659 AGCD01054622;AGCD01054623;AGCD01054624;GBDF01305945;GBDJ01137009;XM_005401440;XM_005401441 XP_005401497;XP_005401498 MODEL 8855751 protein-coding Ppp1r27 protein phosphatase 1 regulatory subunit 27 ENCODES a protein that exhibits phosphatase binding (ortholog) NW_004955506 1327073 1328187 + 102026238 AGCD01065256;GBCB01002479;XM_005407253;XM_005407254 XP_005407310;XP_005407311 MODEL 9026353 protein-coding Rnd2 Rho family GTPase 2 INVOLVED IN positive regulation of collateral sprouting (ortholog); FOUND IN early endosome (ortholog) NW_004955451 16806527 16809091 + 102029580 AGCD01043709;GBBH01228170;XM_005394495 XP_005394552 MODEL 8920744 ncrna LOC102028754 uncharacterized LOC102028754 NW_004955419 28603928 28610615 + 102028754 AGCD01020470;GBDF01015141;XR_260671 MODEL 8911222 protein-coding C1ql1 complement C1q like 1 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN maintenance of synapse structure (ortholog); motor learning (ortholog); neuron remodeling (ortholog); FOUND IN cerebellar climbing fiber to Purkinje cell synapse (ortholog); climbing fiber (ortholog); cytoplasm (ortholog) NW_004955451 17729106 17734657 - 102008049 AGCD01043769;GBBH01106823;GBCQ01122993;XM_005394651 XP_005394708 MODEL 8962360 protein-coding LOC102029167 mucin-1-like NW_004955467 768963 772618 + 102029167 AGCD01051237;AGCD01051238;GBDF01044980;XM_005399738 XP_005399795 MODEL 39132081 snorna SNORA72 Small nucleolar RNA SNORA72 8903301 protein-coding Rgs9 regulator of G protein signaling 9 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN dark adaptation (ortholog); G protein-coupled dopamine receptor signaling pathway (ortholog); light adaption (ortholog); PARTICIPATES IN dopamine signaling pathway via D1 family of receptors; dopamine signaling pathway via D2 family of receptors; G protein mediated signaling pathway via Galphai family; ASSOCIATED WITH bradyopsia (ortholog); bradyopsia 1 (ortholog); Drug-Induced Dyskinesia (ortholog); FOUND IN glutamatergic synapse (ortholog); photoreceptor inner segment (ortholog); photoreceptor outer segment (ortholog) NW_004955478 4614730 4683152 + 102004811 AGCD01055853;AGCD01055854;AGCD01055855;GBDF01291760;XM_005402137 XP_005402194 MODEL 8897788 trna Trnaf-gaa transfer RNA phenylalanine (anticodon GAA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978787 AGCD01003541;AGCD01050597;AGCD01050631;AGCD01050636;AGCD01057309;AGCD01062085;AGCD01066489;AGCD01066490 MODEL 8892307 protein-coding Slc25a11 solute carrier family 25 member 11 ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); oxoglutarate:malate antiporter activity (ortholog); proton transmembrane transporter activity (ortholog); INVOLVED IN gluconeogenesis (ortholog); malate-aspartate shuttle (ortholog); PARTICIPATES IN fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; glycogen storage disease type Ia pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); pheochromocytoma/paraganglioma syndrome 6 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955467 10349378 10352649 - 102019491 AGCD01051561;GBCB01004634;XM_005399613;XM_005399615 XP_005399670;XP_005399672 MODEL 8962314 protein-coding Smurf1 SMAD specific E3 ubiquitin protein ligase 1 ENCODES a protein that exhibits activin receptor binding (ortholog); I-SMAD binding (ortholog); R-SMAD binding (ortholog); INVOLVED IN autophagy (ortholog); BMP signaling pathway (ortholog); cell differentiation (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Cocaine-Related Disorders (ortholog); Spinal Cord Injuries (ortholog); withdrawal disorder (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); mitochondrion (ortholog) NW_004955460 14774545 14860783 - 102025442 AGCD01048760;AGCD01048761;GBDJ01276937;XM_013521235;XM_013521236;XM_013521237;XM_013521238;XM_013521239 XP_013376689;XP_013376690;XP_013376691;XP_013376692;XP_013376693 MODEL 8787836 protein-coding LOC102011800 arrestin domain-containing protein 2 NW_004955524 3316609 3321314 - 102011800 AGCD01068880;AGCD01068881;GBCB01002759;GBDI01131111;XM_013507270 XP_013362724 MODEL 8980375 protein-coding LOC102023622 histone H1oo ENCODES a protein that exhibits nucleosomal DNA binding (ortholog); structural constituent of chromatin (ortholog); INVOLVED IN epigenetic regulation of gene expression (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955429 17778193 17783307 - 102023622 AGCD01028866;AGCD01028867;GBDJ01408771;XM_005387262 XP_005387319 MODEL 8800605 protein-coding LOC102011316 olfactory receptor 2T2-like NW_004955418 30170706 30175904 - 102011316 AGCD01019506;GBBH01082943;XM_005382368 XP_005382425 MODEL 8767787 protein-coding LOC102015945 E3 ubiquitin-protein ligase TRIM68 NW_004955414 20201525 20210506 - 102015945 AGCD01015362;GBDF01254273;XM_005380050 XP_005380107 MODEL 8902365 protein-coding Sema5b semaphorin 5B INVOLVED IN axon extension (ortholog); detection of light stimulus involved in visual perception (ortholog); neuron projection extension (ortholog); FOUND IN cytosol (ortholog) NW_004955427 22109946 22219497 - 102013432 AGCD01027464;AGCD01027465;GBCQ01113375;XM_005386522;XM_005386523;XM_013515029 XP_005386579;XP_005386580;XP_013370483 MODEL 9028218 protein-coding LOC102012951 olfactory receptor 52N2 NW_004955414 21777014 21940262 - 102012951 AGCD01015432;AGCD01015433;AGCD01015434;AGCD01015435;AGCD01015436;AGCD01015437;AGCD01015438;GBDF01075977;XM_005380109;XM_005380110;XM_005380111;XM_005380112;XM_013511697 XP_005380166;XP_005380167;XP_005380168;XP_005380169;XP_013367151 MODEL 8829477 protein-coding LOC102028102 uricase NW_004955423 9488000 9515536 + 102028102 AGCD01023660;AGCD01023661;AGCD01023662;GBDF01296608;XM_005385361 XP_005385418 MODEL 8809338 protein-coding Lmo1 LIM domain only 1 INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of T cell homeostatic proliferation (ortholog); ASSOCIATED WITH neuroblastoma (ortholog); T-cell acute lymphoblastic leukemia (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955414 24021275 24072098 - 102017224 AGCD01015532;AGCD01015533;GBDI01322766;XM_005380218;XM_005380219;XM_005380220;XM_013511707;XM_013511708 XP_005380275;XP_005380276;XP_005380277;XP_013367161;XP_013367162 MODEL 8727354 protein-coding Sowahc sosondowah ankyrin repeat domain family member C FOUND IN sperm annulus (ortholog); sperm flagellum (ortholog) NW_004955470 12699007 12702332 + 102007004 AGCD01052937;GBDF01250483;GBDK01218176;XM_013522810 XP_013378264 MODEL 10241641 ncrna LOC106148262 uncharacterized LOC106148262 NW_004955418 23105773 23117110 - 106148262 AGCD01019298;GBDJ01341794;XR_001233540;XR_001233541;XR_001233542 MODEL 8731398 pseudo LOC102009787 glucose 1,6-bisphosphate synthase pseudogene NW_004955402 47456121 47465974 - 102009787 AGCD01001183;AGCD01001184;AGCD01001185;AGCD01001186;AGCD01001187 MODEL 8735962 pseudo LOC102026074 histone-lysine N-methyltransferase SUV39H2 pseudogene NW_004955406 24704624 24705263 - 102026074 AGCD01006206 MODEL 8780559 protein-coding Rab2a RAB2A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN autophagosome-lysosome fusion (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); Golgi organization (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN autophagosome membrane (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog) NW_004955444 18091640 18169971 - 102030675 AGCD01039229;GBCE01032380;XM_005392185 XP_005392242 MODEL 8862879 protein-coding LOC102003926 multidrug resistance protein 3 NW_004955607 307152 369339 + 102003926 AGCD01076983;AGCD01076984;XM_005414906;XM_013510114 XP_005414963;XP_013365568 MODEL 9056307 protein-coding Ppp1r35 protein phosphatase 1 regulatory subunit 35 INVOLVED IN notochord morphogenesis (ortholog); positive regulation of centriole elongation (ortholog); positive regulation of cilium assembly (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog) NW_004955573 523512 524979 + 102010428 AGCD01074988;AGCD01074989;GBBH01065691;GBDF01134060;XM_013509474 XP_013364928 MODEL 8763603 protein-coding Sgcd sarcoglycan delta INVOLVED IN calcium ion homeostasis (ortholog); calcium-mediated signaling (ortholog); cardiac muscle cell contraction (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2F (ortholog); cardiomyopathy (ortholog); FOUND IN dystroglycan complex (ortholog); dystrophin-associated glycoprotein complex (ortholog); plasma membrane (ortholog) NW_004955408 10273344 10820108 + 102010673 AGCD01008265;AGCD01008266;AGCD01008267;AGCD01008268;AGCD01008269;AGCD01008270;AGCD01008271;AGCD01008272;AGCD01008273;AGCD01008274;GBCE01162943;XM_005376219;XM_013508746 XP_005376276;XP_013364200 MODEL 8999129 protein-coding Slc9a7 solute carrier family 9 member A7 ENCODES a protein that exhibits potassium:proton antiporter activity (ortholog); sodium:proton antiporter activity (ortholog); INVOLVED IN Golgi lumen acidification (ortholog); ASSOCIATED WITH X-linked intellectual developmental disorder 108 (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog); recycling endosome membrane (ortholog) NW_004955516 1286070 1428789 + 102025499 AGCD01067422;AGCD01067423;AGCD01067424;AGCD01067425;AGCD01067426;GBDI01080045;XM_005408973;XM_005408975 XP_005409030;XP_005409032 MODEL 10218004 ncrna LOC106147167 uncharacterized LOC106147167 NW_004955408 36719493 36826754 + 106147167 AGCD01008986;AGCD01008987;AGCD01008988;AGCD01008989;GBCE01172684;XR_001231948 MODEL 8715438 protein-coding Peli3 pellino E3 ubiquitin protein ligase family member 3 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN defense response to Gram-negative bacterium (ortholog); negative regulation of extrinsic apoptotic signaling pathway (ortholog); negative regulation of protein ubiquitination (ortholog); PARTICIPATES IN interleukin-1 signaling pathway NW_004955422 18868696 18877826 - 102010594 AGCD01022964;GBDF01002198;XM_005384400;XM_005384401;XM_005384402 XP_005384457;XP_005384458;XP_005384459 MODEL 8733858 protein-coding LOC102018994 uncharacterized LOC102018994 NW_004955555 1543178 1564850 + 102018994 AGCD01073087;AGCD01073088;AGCD01073089;AGCD01073090;GBBH01204503;XM_013508744;XR_001232305;XR_001232306;XR_001232307;XR_001232308 XP_013364198 MODEL 8732835 ncrna LOC102006782 uncharacterized LOC102006782 NW_004955487 482152 483842 + 102006782 AGCD01059218;GBCE01175126;XR_001231161 MODEL 9009561 protein-coding Sag S-antigen visual arrestin ENCODES a protein that exhibits opsin binding (ortholog); phosphoprotein binding (ortholog); spectrin binding (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; visual phototransduction pathway; ASSOCIATED WITH cone dystrophy (ortholog); congenital stationary night blindness (ortholog); fundus dystrophy (ortholog); FOUND IN photoreceptor inner segment (ortholog); photoreceptor outer segment (ortholog) NW_004955453 2845561 2878342 - 102009796 AGCD01044642;AGCD01044643;AGCD01044644;AGCD01044645;GBDK01342716;XM_005395351;XM_005395352;XM_013519856;XM_013519857 XP_005395408;XP_005395409;XP_013375310;XP_013375311 MODEL 8977867 protein-coding Psd3 pleckstrin and Sec7 domain containing 3 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); Contracture (ortholog); high grade glioma (ortholog); FOUND IN cleavage furrow (ortholog); glutamatergic synapse (ortholog); membrane (ortholog) NW_004955403 42442708 42943314 - 102019347 AGCD01002752;AGCD01002753;AGCD01002754;AGCD01002755;AGCD01002756;AGCD01002757;AGCD01002758;AGCD01002759;AGCD01002760;AGCD01002761;AGCD01002762;AGCD01002763;GBDF01047483;XM_005373608;XM_005373613 XP_005373665;XP_005373670 MODEL 8811238 pseudo LOC102010574 sodium channel modifier 1 pseudogene NW_004955413 9333530 9334670 - 102010574 AGCD01013903 MODEL 8877634 protein-coding Tram1 translocation associated membrane protein 1 INVOLVED IN cotranslational protein targeting to membrane (ortholog); protein insertion into ER membrane (ortholog); response to unfolded protein (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955444 9110533 9153585 + 102030248 AGCD01038959;AGCD01038960;AGCD01038961;GBDK01002034;XM_005392105 XP_005392162 MODEL 8823216 pseudo LOC102007161 zinc finger protein 451 pseudogene NW_004955444 72378 78511 + 102007161 AGCD01038648;AGCD01038649 MODEL 8918698 ncrna LOC102030576 uncharacterized LOC102030576 NW_004955559 1767155 1780417 - 102030576 AGCD01073666;GBDF01119081;XR_001232346 MODEL 8748236 pseudo LOC102011808 THO complex subunit 5 homolog pseudogene NW_004955540 390461 391906 + 102011808 AGCD01071274 MODEL 8950182 protein-coding Epb41l5 erythrocyte membrane protein band 4.1 like 5 ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actomyosin structure organization (ortholog); apical constriction (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell leading edge (ortholog); focal adhesion (ortholog); photoreceptor inner segment (ortholog) NW_004955459 9641926 9783718 - 102017547 AGCD01048164;AGCD01048165;AGCD01048166;AGCD01048167;AGCD01048168;AGCD01048169;AGCD01048170;AGCD01048171;GBCE01115046;XM_005397654;XM_005397658;XM_005397659 XP_005397711;XP_005397715;XP_005397716 MODEL 8898630 protein-coding Rapgef1 Rap guanine nucleotide exchange factor 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); blood vessel development (ortholog); cell-cell adhesion (ortholog); PARTICIPATES IN c-Jun N-terminal kinases MAPK signaling pathway; E-cadherin signaling pathway; erythropoietin signaling pathway; ASSOCIATED WITH anti-basement membrane glomerulonephritis (ortholog); mesangial proliferative glomerulonephritis (ortholog); Monoclonal B-Cell Lymphocytosis (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955513 1224418 1328176 - 102024834 AGCD01066849;AGCD01066850;AGCD01066851;GBDK01129240;XM_013506678;XM_013506679;XM_013506680;XM_013506681;XM_013506682;XM_013506683;XM_013506684;XM_013506685 XP_013362132;XP_013362133;XP_013362134;XP_013362135;XP_013362136;XP_013362137;XP_013362138;XP_013362139 MODEL 8731627 pseudo LOC102017856 40S ribosomal protein SA pseudogene NW_004955412 30610458 30611355 - 102017856 AGCD01013303 MODEL 8863844 protein-coding Pcnx1 pecanex 1 ASSOCIATED WITH prostate cancer (ortholog) NW_004955523 4100572 4215526 - 102007807 AGCD01068630;AGCD01068631;AGCD01068632;AGCD01068633;GBCQ01096454;XM_013507161;XM_013507162;XM_013507164 XP_013362615;XP_013362616;XP_013362618 MODEL 8904669 protein-coding Rnd3 Rho family GTPase 3 ASSOCIATED WITH hepatocellular carcinoma (ortholog) NW_004955440 16106555 16113337 - 102018652 AGCD01036511;GBDJ01010111;GBDJ01010113;XM_013517502 XP_013372956 MODEL 8868704 pseudo LOC102008654 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 pseudogene NW_004955516 2082890 2085194 + 102008654 AGCD01067447 MODEL 8907453 pseudo LOC102028756 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L pseudogene NW_004955419 14722456 14726638 - 102028756 AGCD01020042 MODEL 39131448 protein-coding WFDC9 WAP four-disulfide core domain 9 8883716 protein-coding Prkn parkin RBR E3 ubiquitin protein ligase ENCODES a protein that exhibits actin binding (ortholog); beta-catenin binding (ortholog); cullin family protein binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); aggresome assembly (ortholog); autophagy of mitochondrion (ortholog); PARTICIPATES IN altered mitochondrial autophagy pathway; mitochondrial autophagy pathway; Parkinson's disease pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Animal Disease Models (ortholog); autism spectrum disorder (ortholog); FOUND IN aggresome (ortholog); axon (ortholog); cytoplasm (ortholog) NW_004955439 18664230 19953358 + 102007700 AGCD01036062;AGCD01036063;AGCD01036064;AGCD01036065;AGCD01036066;AGCD01036067;AGCD01036068;AGCD01036069;AGCD01036070;AGCD01036071;AGCD01036072;AGCD01036073;AGCD01036074;AGCD01036075;AGCD01036076;AGCD01036077;AGCD01036078;AGCD01036079;AGCD01036080;AGCD01036081;AGCD01036082;AGCD01036083;AGCD01036084;AGCD01036085;AGCD01036086;AGCD01036087;AGCD01036088;AGCD01036089;AGCD01036090;AGCD01036091;AGCD01036092;AGCD01036093;AGCD01036094;AGCD01036095;AGCD01036096;GBDF01253845;XM_005390686;XM_005390687;XM_005390688;XM_005390689 XP_005390743;XP_005390744;XP_005390745;XP_005390746 MODEL 8991079 protein-coding Lmo2 LIM domain only 2 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); chromatin binding (ortholog); DNA binding (ortholog); INVOLVED IN embryonic hemopoiesis (ortholog); negative regulation of erythrocyte differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN nucleus (ortholog); protein-containing complex (ortholog); transcription regulator complex (ortholog) NW_004955422 12354865 12362026 + 102019401 AGCD01022791;GBBH01063389;GBDF01194295;XM_005384152 XP_005384209 MODEL 8859207 protein-coding Ptpn2 protein tyrosine phosphatase non-receptor type 2 ENCODES a protein that exhibits integrin binding (ortholog); non-membrane spanning protein tyrosine phosphatase activity (ortholog); protein kinase binding (ortholog); INVOLVED IN B cell differentiation (ortholog); erythrocyte differentiation (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN Jak-Stat signaling pathway; ASSOCIATED WITH Crohn's disease (ortholog); pre-eclampsia (ortholog); rheumatoid arthritis (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955402 771410 846671 + 102008478 AGCD01000033;AGCD01000034;GBCE01096711;XM_005372550;XM_013513054;XM_013513107;XM_013513139;XM_013513163;XM_013513183;XM_013513207;XM_013513238;XM_013513272;XM_013513296;XM_013513319;XM_013513343 XP_005372607;XP_013368508;XP_013368561;XP_013368593;XP_013368617;XP_013368637;XP_013368661;XP_013368692;XP_013368726;XP_013368750;XP_013368773;XP_013368797 MODEL 8989725 ncrna LOC102026442 uncharacterized LOC102026442 NW_004955423 25591771 25594556 + 102026442 AGCD01024082;GBCE01061601;XR_260997 MODEL 8915912 protein-coding Slc9a8 solute carrier family 9 member A8 ENCODES a protein that exhibits potassium:proton antiporter activity (ortholog); sodium:proton antiporter activity (ortholog); INVOLVED IN acrosome assembly (ortholog); Golgi lumen acidification (ortholog); potassium ion transport (ortholog); ASSOCIATED WITH dementia (ortholog); FOUND IN acrosomal vesicle (ortholog); apical plasma membrane (ortholog); Golgi apparatus (ortholog) NW_004955445 8308847 8384146 - 102003914 AGCD01039577;AGCD01039578;AGCD01039579;AGCD01039580;GBBH01062722;GBCB01056479;XM_005392327;XM_013518263 XP_005392384;XP_013373717 MODEL 8848332 pseudo LOC102015946 high mobility group protein B1 pseudogene NW_004955414 23934137 23936821 + 102015946 AGCD01015531 MODEL 9057000 pseudo LOC102010942 2-hydroxyacylsphingosine 1-beta-galactosyltransferase pseudogene NW_004955526 532505 539029 - 102010942 AGCD01069240 MODEL 8946454 ncrna LOC102011319 uncharacterized LOC102011319 NW_004955484 8530719 8557626 + 102011319 AGCD01058391;AGCD01058392;AGCD01058393;GBDF01038957;XR_263894 MODEL 8873469 ncrna LOC102006789 uncharacterized LOC102006789 NW_004955424 2250910 2258353 + 102006789 AGCD01024265;GBDF01111914;XR_261034 MODEL 8875498 pseudo LOC102010575 60S ribosomal protein L19 pseudogene NW_004955414 19517744 19518919 - 102010575 AGCD01015321 MODEL 39132076 snorna SNORA72 Small nucleolar RNA SNORA72 8929733 protein-coding LOC102024617 olfactory receptor 11H6-like NW_004955550 766566 767534 + 102024617 AGCD01072522;XM_005412138 XP_005412195 MODEL 8941825 protein-coding LOC102019395 acylcarnitine hydrolase-like NW_004955484 9624869 9637807 - 102019395 AGCD01058424;GBCQ01037834;XM_005403710;XM_005403711;XM_013504017 XP_005403767;XP_005403768;XP_013359471 MODEL 8763089 protein-coding Ppp1r36 protein phosphatase 1 regulatory subunit 36 ASSOCIATED WITH autistic disorder (ortholog) NW_004955466 5312602 5339402 - 102017969 AGCD01050873;AGCD01050874;AGCD01050875;GBDF01176713;XM_013521899;XM_013521900;XM_013521901 XP_013377353;XP_013377354;XP_013377355 MODEL 39133385 snrna U4 U4 spliceosomal RNA 8700907 protein-coding LOC102003927 PRAME family member 20-like NW_004955615 78379 80979 - 102003927 AGCD01077249;XM_013510138 XP_013365592 MODEL 8856953 protein-coding Sgce sarcoglycan epsilon INVOLVED IN kidney development (ortholog); skeletal muscle tissue development (ortholog); ASSOCIATED WITH genetic disease (ortholog); myoclonic dystonia (ortholog); myoclonic dystonia 11 (ortholog); FOUND IN dendrite membrane (ortholog); dystrophin-associated glycoprotein complex (ortholog); Golgi apparatus (ortholog) NW_004955432 11310488 11383803 - 102013326 AGCD01030945;AGCD01030946;AGCD01030947;GBDI01385644;XM_005388045;XM_005388047;XM_005388048;XM_005388049;XM_013516087;XM_013516088;XM_013516089 XP_005388102;XP_005388104;XP_005388105;XP_005388106;XP_013371541;XP_013371542;XP_013371543 MODEL 9055161 protein-coding Slc25a12 solute carrier family 25 member 12 ENCODES a protein that exhibits 3-sulfino-L-alanine: proton, glutamate antiporter activity (ortholog); acidic amino acid transmembrane transporter activity (ortholog); aspartate:glutamate, proton antiporter activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); intracellular glutamate homeostasis (ortholog); L-glutamate transmembrane transport (ortholog); PARTICIPATES IN argininosuccinic aciduria pathway; carbamoyl phosphate synthetase I deficiency pathway; citrullinemia pathway; ASSOCIATED WITH Asperger syndrome (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955449 3093603 3182513 + 102017288 AGCD01041845;GBCQ01007693;GBDJ01025625;XM_005393225 XP_005393282 MODEL 8745775 protein-coding LOC102021900 transmembrane protein 45A-like NW_004955427 2000281 2046098 + 102021900 AGCD01026887;AGCD01026888;AGCD01026889;GBCC01000449;XM_005386297 XP_005386354 MODEL 8752051 protein-coding Smurf2 SMAD specific E3 ubiquitin protein ligase 2 ENCODES a protein that exhibits identical protein binding (ortholog); SMAD binding (ortholog); transforming growth factor beta receptor binding (ortholog); INVOLVED IN lysosomal protein catabolic process (ortholog); negative regulation of MyD88-dependent toll-like receptor signaling pathway (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH diffuse large B-cell lymphoma (ortholog); FOUND IN cytoplasm (ortholog); membrane raft (ortholog); nuclear speck (ortholog) NW_004955478 7205266 7336390 + 102027523 AGCD01055954;AGCD01055955;AGCD01055956;AGCD01055957;GBCE01117695;XM_013503133 XP_013358587 MODEL 8948436 protein-coding LOC102023623 olfactory receptor 4C6-like NW_004955511 192846 193784 + 102023623 AGCD01066322;XM_005408181 XP_005408238 MODEL 8744465 ncrna LOC102018998 uncharacterized LOC102018998 NW_004955578 1037639 1043605 + 102018998 AGCD01075507;AGCD01075508;GBDF01176403;XR_265087 MODEL 8703235 protein-coding Sall1 spalt like transcription factor 1 ENCODES a protein that exhibits beta-catenin binding (ortholog); chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN adrenal gland development (ortholog); branching involved in ureteric bud morphogenesis (ortholog); embryonic digestive tract development (ortholog); ASSOCIATED WITH chronic kidney disease (ortholog); Congenital Abnormalities (ortholog); congenital anomalies of kidney and urinary tract (ortholog); FOUND IN chromocenter (ortholog); cytoplasm (ortholog); heterochromatin (ortholog) NW_004955433 9146074 9161171 - 102019424 AGCD01031610;GBDI01327095;XM_005388281 XP_005388338 MODEL 8850335 protein-coding Rcbtb1 RCC1 and BTB domain containing protein 1 ASSOCIATED WITH allergic disease (ortholog); childhood-onset asthma (ortholog); Coats disease (ortholog); FOUND IN cytoplasm (ortholog) NW_004955431 2976283 3080665 - 102026031 AGCD01029944;AGCD01029945;AGCD01029946;GBDI01218100;XM_005387595;XM_005387596;XM_005387597;XM_013515750 XP_005387652;XP_005387653;XP_005387654;XP_013371204 MODEL 8717872 protein-coding LOC102012953 olfactory receptor 491-like NW_004955414 23663348 23664286 - 102012953 AGCD01015514;XM_013511761 XP_013367215 MODEL 8881748 pseudo LOC102030578 metal-response element-binding transcription factor 2 pseudogene NW_004955562 1985413 1991603 + 102030578 AGCD01074008;AGCD01074009 MODEL 9021688 protein-coding Sema6a semaphorin 6A ENCODES a protein that exhibits identical protein binding (ortholog); semaphorin receptor binding (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN axon guidance (ortholog); cell surface receptor signaling pathway (ortholog); cellular response to vascular endothelial growth factor stimulus (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); Self-Limited Delayed Puberty (ortholog); FOUND IN plasma membrane (ortholog) NW_004955408 36219814 36344131 - 102028382 AGCD01008979;AGCD01008980;GBDF01280169;XM_005376537;XM_005376538;XM_005376540;XM_005376541;XM_013506973;XM_013506976 XP_005376594;XP_005376595;XP_005376597;XP_005376598;XP_013362427;XP_013362430 MODEL 9017349 protein-coding LOC102028105 uncharacterized LOC102028105 NW_004955424 19565040 19577705 - 102028105 AGCD01024830;XM_005385814 XP_005385871 MODEL 8792751 protein-coding C1ql2 complement C1q like 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); postsynaptic density assembly (ortholog); regulation of synapse maturation (ortholog); FOUND IN cerebellar climbing fiber to Purkinje cell synapse (ortholog); extracellular region (ortholog); glutamatergic synapse (ortholog) NW_004955459 10569064 10571064 + 102024767 AGCD01048192;GBDK01160507;XM_013521053 XP_013376507 MODEL 8750141 protein-coding Tkt transketolase ENCODES a protein that exhibits calcium ion binding (ortholog); carbohydrate binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN D-xylulose 5-phosphate biosynthetic process (ortholog); glyceraldehyde-3-phosphate biosynthetic process (ortholog); pentose-phosphate shunt (ortholog); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - non-oxidative phase; ribose 5-phosphate isomerase deficiency pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum membrane (ortholog); nuclear body (ortholog) NW_004955430 3178830 3193241 - 102029887 AGCD01029194;GBCE01001144;GBDF01082121;XM_005387366 XP_005387423 MODEL 8891459 ncrna LOC102011810 uncharacterized LOC102011810 NW_004955440 4672850 4697012 - 102011810 AGCD01036266;GBDF01015047;XR_262004 MODEL 10136535 ncrna LOC106148263 uncharacterized LOC106148263 NW_004955418 17744073 17751286 - 106148263 AGCD01019157;GBDK01409842;XR_001233543 MODEL 8794471 pseudo LOC102026076 protein lin-28 homolog A pseudogene NW_004955407 21955426 21956050 + 102026076 AGCD01007374 MODEL 8936907 ncrna LOC102006792 uncharacterized LOC102006792 NW_004955424 19657877 19669500 - 102006792 AGCD01024832;GBBH01074895;XR_001234252;XR_261085 MODEL 8928362 protein-coding Epb42 erythrocyte membrane protein band 4.2 INVOLVED IN cell morphogenesis (ortholog); hemoglobin metabolic process (ortholog); monoatomic ion homeostasis (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary spherocytosis (ortholog); hereditary spherocytosis type 1 (ortholog); FOUND IN ankyrin-1 complex (ortholog); cortical cytoskeleton (ortholog); membrane (ortholog) NW_004955416 9784211 9800453 - 102029963 AGCD01017099;GBBH01193362;XM_005381368 XP_005381425 MODEL 8935538 protein-coding Rgs9bp regulator of G protein signaling 9 binding protein INVOLVED IN detection of light stimulus involved in visual perception (ortholog); PARTICIPATES IN visual phototransduction pathway; ASSOCIATED WITH bradyopsia (ortholog); bradyopsia 2 (ortholog); fundus dystrophy (ortholog); FOUND IN photoreceptor outer segment (ortholog) NW_004955468 5311318 5313612 - 102030513 AGCD01051963;GBCQ01162978;XM_005400087 XP_005400144 MODEL 8791757 ncrna LOC102008655 uncharacterized LOC102008655 NW_004955434 11901814 11906490 - 102008655 AGCD01032382;GBDF01223017;XR_001234777 MODEL 15036848 trna Trnag-acc transfer RNA glycine (anticodon ACC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978843 10257898 protein-coding LOC106150007 uncharacterized LOC106150007 NW_004955460 8648783 8652074 + 106150007 AGCD01048528;XM_013521208;XR_001236519 XP_013376662 MODEL 8787143 protein-coding Rab2b RAB2B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); INVOLVED IN defense response to virus (ortholog); Golgi organization (ortholog); innate immune response (ortholog); FOUND IN acrosomal vesicle (ortholog); autophagosome membrane (ortholog); Golgi apparatus (ortholog) NW_004955550 2180326 2195523 - 102013652 AGCD01072611;GBDF01007040;XM_005412119 XP_005412176 MODEL 8813947 protein-coding Wfikkn1 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 1 ENCODES a protein that exhibits receptor antagonist activity (ortholog); transforming growth factor beta binding (ortholog); INVOLVED IN muscle cell development (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); roof of mouth development (ortholog); FOUND IN extracellular region (ortholog) NW_004955442 16573094 16577650 - 102024168 AGCD01037901;GBDK01343854;XM_005391633 XP_005391690 MODEL 8710259 protein-coding Prkra protein activator of interferon induced protein kinase EIF2AK2 ENCODES a protein that exhibits double-stranded RNA binding (ortholog); enzyme activator activity (ortholog); enzyme binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to oxidative stress (ortholog); ear development (ortholog); PARTICIPATES IN ceramide signaling pathway; ASSOCIATED WITH Congenital Microtia (ortholog); Craniofacial Abnormalities (ortholog); dystonia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955403 18394609 18410381 + 102027598 AGCD01002099;GBDF01113358;GBDK01432396;XM_013512630 XP_013368084 MODEL 8949102 protein-coding Pelo pelota mRNA surveillance and ribosome rescue factor ENCODES a protein that exhibits ribosome binding (ortholog); stalled ribosome sensor activity (ortholog); INVOLVED IN chromosome organization (ortholog); endoderm development (ortholog); inner cell mass cell proliferation (ortholog); PARTICIPATES IN translation termination pathway; FOUND IN cytosolic ribosome (ortholog); Dom34-Hbs1 complex (ortholog) NW_004955446 14564366 14566178 - 102026812 AGCD01040279;GBCQ01001142;XM_005392726 XP_005392783 MODEL 8810266 pseudo LOC102027435 protein ELYS-like NW_004955508 1010100 1080230 + 102027435 AGCD01065753 MODEL 8891668 protein-coding Psd4 pleckstrin and Sec7 domain containing 4 FOUND IN cleavage furrow (ortholog); plasma membrane (ortholog); ruffle membrane (ortholog) NW_004955470 1084318 1125244 - 102020556 AGCD01052625;AGCD01052626;GBDJ01194240;XM_005400583;XM_013522824;XM_013522825;XM_013522826;XR_001237032 XP_005400640;XP_013378278;XP_013378279;XP_013378280 MODEL 9000066 pseudo LOC102005697 calcyclin-binding protein pseudogene NW_004955414 19427986 19428570 + 102005697 AGCD01015315 MODEL 9044860 protein-coding LOC102029168 olfactory receptor 6N2-like NW_004955468 10706221 10707165 - 102029168 AGCD01052097;XM_005400319 XP_005400376 MODEL 8746835 pseudo LOC102007162 protein Red-like NW_004955565 2044877 2054593 - 102007162 AGCD01074340 MODEL 8706552 pseudo LOC102010577 fatty acid-binding protein, epidermal pseudogene NW_004955414 14243606 14244127 + 102010577 AGCD01015144 MODEL 8957970 protein-coding LOC102010953 olfactory receptor 5-like NW_004955567 192924 193868 - 102010953 AGCD01074386;XM_005413283 XP_005413340 MODEL 8708635 pseudo LOC102017857 40S ribosomal protein S15a pseudogene NW_004955412 16023672 16024171 - 102017857 AGCD01012891;XM_005378627 MODEL 8889428 ncrna LOC102028757 uncharacterized LOC102028757 NW_004955485 6765784 6772888 - 102028757 AGCD01058627;GBDF01120117;XR_263912 MODEL 8896661 protein-coding Rnf10 ring finger protein 10 ENCODES a protein that exhibits transcription cis-regulatory region binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of Schwann cell proliferation (ortholog); nonfunctional rRNA decay (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Cardiotoxicity (ortholog); FOUND IN cytoplasm (ortholog); cytosolic ribosome (ortholog); extrinsic component of postsynaptic density membrane (ortholog) NW_004955455 11074118 11119771 - 102019470 AGCD01045978;AGCD01045979;AGCD01045980;AGCD01045981;AGCD01045982;AGCD01045983;GBBH01031994;GBCB01006395;XM_013520422 XP_013375876 MODEL 10315020 protein-coding LOC106147168 translation initiation factor IF-2-like NW_004955524 955294 957029 - 106147168 AGCD01068730;GBCB01030724;GBDI01310612;XM_013507251 XP_013362705 MODEL 8902833 protein-coding Lmo3 LIM domain only 3 INVOLVED IN exploration behavior (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); positive regulation of fat cell differentiation (ortholog); FOUND IN cytoplasm (ortholog) NW_004955413 13183294 13238875 - 102007980 AGCD01014009;AGCD01014010;GBDI01299626;XM_005379027;XM_005379028;XM_005379029;XM_005379030;XM_005379031;XM_005379032;XM_005379033;XM_005379034;XM_013511273;XM_013511274 XP_005379084;XP_005379085;XP_005379086;XP_005379087;XP_005379088;XP_005379089;XP_005379090;XP_005379091;XP_013366727;XP_013366728 MODEL 8980768 protein-coding Ppp1r3a protein phosphatase 1 regulatory subunit 3A PARTICIPATES IN glycogen biosynthetic pathway; glycogen degradation pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; ASSOCIATED WITH diabetes mellitus (ortholog); hypoglycemia (ortholog); Insulin Resistance (ortholog) NW_004955432 19854649 19893148 - 102007460 AGCD01031193;GBCB01005118;XM_005388110;XM_005388111 XP_005388167;XP_005388168 MODEL 8806509 protein-coding Ptpn20 protein tyrosine phosphatase non-receptor type 20 FOUND IN centriolar satellite (ortholog) NW_004955556 1850933 1943318 + 102010842 AGCD01073204;AGCD01073205;AGCD01073206;GBBH01151275;XM_005412599;XM_005412600;XM_005412601;XM_005412602;XM_005412603;XM_005412604;XM_005412605;XM_005412606;XM_005412607;XM_005412608;XM_005412609;XM_013508810 XP_005412656;XP_005412657;XP_005412658;XP_005412659;XP_005412660;XP_005412661;XP_005412662;XP_005412663;XP_005412664;XP_005412665;XP_005412666;XP_013364264 MODEL 8768942 protein-coding Sowahd sosondowah ankyrin repeat domain family member D ASSOCIATED WITH COVID-19 (ortholog) NW_004955534 220999 222550 - 102008980 AGCD01070441;GBBH01135014;XM_005410434 XP_005410491 MODEL 8863471 protein-coding LOC102021901 thioredoxin domain-containing protein 2-like NW_004955504 1761700 1768176 - 102021901 AGCD01064847;XM_005407083 XP_005407140 MODEL 8928059 protein-coding LOC102015947 olfactory receptor 478 NW_004955414 23520391 23521359 - 102015947 AGCD01015501;XM_005380518 XP_005380575 MODEL 8965695 protein-coding Rab30 RAB30, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GTPase activity (ortholog); INVOLVED IN Golgi organization (ortholog); lipid homeostasis (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN autolysosome membrane (ortholog); autophagosome membrane (ortholog); cis-Golgi network (ortholog) NW_004955414 9497276 9582747 + 102028176 AGCD01015027;AGCD01015028;GBCE01114038;XM_005379804;XM_005379805;XM_005379807;XM_013512054 XP_005379861;XP_005379862;XP_005379864;XP_013367508 MODEL 8744887 protein-coding Smyd1 SET and MYND domain containing 1 ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN chromatin remodeling (ortholog); heart development (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955424 769287 800646 - 102013428 AGCD01024208;AGCD01024209;GBCB01005536;XM_005385382;XM_005385383 XP_005385439;XP_005385440 MODEL 8825644 protein-coding Slc9a9 solute carrier family 9 member A9 ENCODES a protein that exhibits potassium:proton antiporter activity (ortholog); sodium:proton antiporter activity (ortholog); INVOLVED IN defense response to bacterium (ortholog); phagosome maturation (ortholog); potassium ion transmembrane transport (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); colorectal cancer (ortholog); FOUND IN early endosome (ortholog); early endosome membrane (ortholog); early phagosome (ortholog) NW_004955508 2060078 2671792 + 102009524 AGCD01065779;AGCD01065780;AGCD01065781;AGCD01065782;AGCD01065783;AGCD01065784;AGCD01065785;AGCD01065786;AGCD01065787;AGCD01065788;AGCD01065789;AGCD01065790;AGCD01065791;GBDF01114325;XM_005407728;XM_005407729;XM_005407730 XP_005407785;XP_005407786;XP_005407787 MODEL 8850129 protein-coding Rapgef2 Rap guanine nucleotide exchange factor 2 ENCODES a protein that exhibits beta-1 adrenergic receptor binding (ortholog); cAMP binding (ortholog); cGMP binding (ortholog); INVOLVED IN adenylate cyclase-activating adrenergic receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); blood vessel development (ortholog); PARTICIPATES IN adenosine signaling pathway; ASSOCIATED WITH familial adult myoclonic epilepsy 7 (ortholog); Myoclonic Epilepsies (ortholog); FOUND IN apical plasma membrane (ortholog); bicellular tight junction (ortholog); cell-cell junction (ortholog) NW_004955471 12670837 12838910 + 102020438 AGCD01053303;AGCD01053304;AGCD01053305;AGCD01053306;AGCD01053307;AGCD01053308;GBCE01137795;GBDF01084835;XM_013522900 XP_013378354 MODEL 8937914 ncrna LOC102027437 uncharacterized LOC102027437 NW_004955429 22948563 22999592 - 102027437 AGCD01029045;AGCD01029046;AGCD01029047;AGCD01029048;AGCD01029049;AGCD01029050;GBDF01157554;XR_001234506;XR_001234507;XR_261394 MODEL 8889880 protein-coding Rcbtb2 RCC1 and BTB domain containing protein 2 INVOLVED IN cell population proliferation (ortholog); digestive tract development (ortholog); liver development (ortholog); ASSOCIATED WITH malignant histiocytic disease (ortholog); mitochondrial DNA depletion syndrome 5 (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955431 2122640 2170222 - 102016407 AGCD01029923;GBCB01040884;XM_005387558;XM_005387559;XM_005387562;XM_005387564;XM_005387565;XM_005387567;XM_013515735;XM_013515736;XM_013515737;XM_013515738;XM_013515739;XM_013515740;XM_013515741;XM_013515742 XP_005387615;XP_005387616;XP_005387619;XP_005387621;XP_005387622;XP_005387624;XP_013371189;XP_013371190;XP_013371191;XP_013371192;XP_013371193;XP_013371194;XP_013371195;XP_013371196 MODEL 8860198 pseudo LOC102012954 SAP domain-containing ribonucleoprotein pseudogene NW_004955472 1335239 1335980 - 102012954 AGCD01053386 MODEL 39132071 snorna SNORA72 Small nucleolar RNA SNORA72 8967815 protein-coding LOC102026077 chromosome unknown open reading frame, human C12orf71 NW_004955457 4101646 4104511 - 102026077 AGCD01046786;GBDF01192951;XM_005396936;XM_013520737 XP_005396993;XP_013376191 MODEL 8919697 pseudo LOC102011811 PCNA-associated factor pseudogene NW_004955440 19528120 19528458 - 102011811 AGCD01036637 MODEL 39133386 snrna U4 U4 spliceosomal RNA 8819300 ncrna LOC102003928 uncharacterized LOC102003928 NW_004955403 24016583 24021309 + 102003928 AGCD01002266;GBDK01211102;XR_259201 MODEL 8776015 protein-coding Tram1l1 translocation associated membrane protein 1 like 1 NW_004955428 22645718 22647763 + 102027208 AGCD01028192;GBBH01122847;GBCE01049874;XM_005386808 XP_005386865 MODEL 8898603 protein-coding Plod3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 ENCODES a protein that exhibits iron ion binding (ortholog); metal ion binding (ortholog); procollagen galactosyltransferase activity (ortholog); INVOLVED IN basement membrane assembly (ortholog); cellular response to hormone stimulus (ortholog); collagen biosynthetic process (ortholog); ASSOCIATED WITH BCARD syndrome (ortholog); Cerebral Hemorrhage (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog); extracellular matrix (ortholog) NW_004955456 16082424 16090773 + 102023777 AGCD01046689;GBDF01156007;XM_005396861;XM_005396862 XP_005396918;XP_005396919 MODEL 8743547 protein-coding LOC102008662 uncharacterized LOC102008662 NW_004955538 2203100 2223177 - 102008662 AGCD01071109;GBDK01307063;XM_013507815;XM_013507816;XM_013507817 XP_013363269;XP_013363270;XP_013363271 MODEL 10243479 ncrna LOC106150008 uncharacterized LOC106150008 NW_004955460 13641877 13643314 + 106150008 AGCD01048713;GBCC01034086;XR_001236521 MODEL 8755597 protein-coding Sgcg sarcoglycan gamma INVOLVED IN gene expression (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2C (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2D (ortholog); FOUND IN dystroglycan complex (ortholog); plasma membrane (ortholog); sarcoglycan complex (ortholog) NW_004955497 3592041 3702780 + 102013189 AGCD01062549;AGCD01062550;AGCD01062551;AGCD01062552;GBCB01003278;GBDI01356297;XM_005406371 XP_005406428 MODEL 9054769 protein-coding Slc25a13 solute carrier family 25 member 13 ENCODES a protein that exhibits 3-sulfino-L-alanine: proton, glutamate antiporter activity (ortholog); acidic amino acid transmembrane transporter activity (ortholog); aspartate:glutamate, proton antiporter activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); ATP biosynthetic process (ortholog); cellular respiration (ortholog); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; ASSOCIATED WITH adult-onset type II citrullinemia (ortholog); Bone Fractures (ortholog); citrullinemia (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955432 12685253 12788307 - 102029430 AGCD01030990;AGCD01030991;AGCD01030992;GBDI01262669;GBDJ01025645;XM_013515919 XP_013371373 MODEL 8949339 protein-coding LOC102009788 vomeronasal type-1 receptor 4-like NW_004955603 389482 390411 - 102009788 AGCD01076843;XM_005414844 XP_005414901 MODEL 8813744 pseudo LOC102019003 rab11 family-interacting protein 2 pseudogene NW_004955589 742663 744819 - 102019003 AGCD01076181 MODEL 8837113 pseudo LOC102023630 WD repeat and FYVE domain-containing protein 1 pseudogene NW_004955525 1777379 1778621 + 102023630 AGCD01069059 MODEL 8966762 protein-coding Sall2 spalt like transcription factor 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); protein-containing complex binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN eye development (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH coloboma (ortholog) NW_004955550 2236129 2250829 - 102014613 AGCD01072615;AGCD01072616;GBDF01045984;XM_005412122 XP_005412179 MODEL 9026158 ncrna LOC102011320 uncharacterized LOC102011320 NW_004955485 7682452 7684730 - 102011320 AGCD01058670;GBCB01006341;XR_263922 MODEL 9028247 protein-coding Pelp1 proline, glutamate and leucine rich protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); SUMO binding (ortholog); INVOLVED IN cellular response to estrogen stimulus (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); euchromatin (ortholog); MLL1 complex (ortholog) NW_004955467 10086025 10128969 - 102013490 AGCD01051545;AGCD01051546;GBCQ01033699;XM_013522128;XM_013522129;XM_013522130 XP_013377582;XP_013377583;XP_013377584 MODEL 8730640 protein-coding LOC102005698 olfactory receptor 51I1-like NW_004955414 21369682 21370626 - 102005698 AGCD01015417;XM_005380087 XP_005380144 MODEL 8838023 protein-coding Sema6b semaphorin 6B ENCODES a protein that exhibits semaphorin receptor binding (ortholog); INVOLVED IN axon guidance (ortholog); central nervous system development (ortholog); hippocampus development (ortholog); ASSOCIATED WITH cerebellar hypoplasia (ortholog); COVID-19 (ortholog); fundus dystrophy (ortholog); FOUND IN plasma membrane (ortholog) NW_004955495 4387147 4399430 + 102008329 AGCD01061920;AGCD01061921;GBCE01168220;GBDF01281169;XM_013505185 XP_013360639 MODEL 8945465 protein-coding LOC102028106 olfactory receptor 10AD1 NW_004955500 7098502 7112769 - 102028106 AGCD01063901;GBDF01220858;XM_013505695 XP_013361149 MODEL 8963835 protein-coding C1ql3 complement C1q like 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); postsynaptic density assembly (ortholog); regulation of synapse organization (ortholog); FOUND IN extracellular region (ortholog); glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog) NW_004955429 11287486 11296716 + 102030103 AGCD01028686;GBDJ01404596;XM_005386970 XP_005387027 MODEL 10293592 ncrna LOC106148264 uncharacterized LOC106148264 NW_004955403 24381265 24384434 + 106148264 AGCD01002273;GBBH01189451;XR_001233547;XR_001233549 MODEL 9038886 protein-coding LOC102006793 melanoma-associated antigen 10-like NW_004955498 6957142 6971415 - 102006793 AGCD01063139;GBDF01251928;XM_005406437;XM_013505537;XM_013505538 XP_005406494;XP_013360991;XP_013360992 MODEL 8794885 protein-coding LOC102019396 ATPase family AAA domain-containing protein 3 NW_004955486 9344108 9360974 - 102019396 AGCD01059177;GBDI01218980;XM_005404214;XM_005404216;XM_005404218 XP_005404271;XP_005404273;XP_005404275 MODEL 8929060 ncrna LOC102028758 uncharacterized LOC102028758 NW_004955485 9026853 9050259 + 102028758 AGCD01058742;AGCD01058743;GBDF01112613;XR_001231065 MODEL 8988418 protein-coding Rgsl1 regulator of G protein signaling like 1 NW_004955406 21274546 21395534 + 102016666 AGCD01006121;AGCD01006122;AGCD01006123;AGCD01006124;AGCD01006125;AGCD01006126;AGCD01006127;GBDF01194182;GBDF01194183;XM_013521438 XP_013376892 MODEL 8951127 pseudo LOC102026443 SH3 and PX domain-containing protein 2A pseudogene NW_004955423 8440653 8442229 - 102026443 AGCD01023630 MODEL 39133387 snrna U4 U4 spliceosomal RNA 8868274 protein-coding Pcnx2 pecanex 2 NW_004955492 6043577 6249483 + 102024578 AGCD01060761;AGCD01060762;AGCD01060763;GBDF01151024;XM_013504672 XP_013360126 MODEL 9010718 protein-coding C1qtnf1 C1q and TNF related 1 ENCODES a protein that exhibits collagen binding (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of platelet activation (ortholog); negative regulation of platelet aggregation (ortholog); positive regulation of aldosterone secretion (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog) NW_004955506 3680352 3700729 - 102026658 AGCD01065318;AGCD01065319;GBBH01050432;XM_005407346;XM_005407347;XM_013506098 XP_005407403;XP_005407404;XP_013361552 MODEL 8758006 ncrna LOC102030579 uncharacterized LOC102030579 NW_004955445 1854233 1881319 - 102030579 AGCD01039346;AGCD01039347;GBDF01176872;XR_001235636;XR_001235637 MODEL 8747343 pseudo LOC102029169 microtubule-associated proteins 1A/1B light chain 3B pseudogene NW_004955469 6603317 6603628 - 102029169 AGCD01052391;XM_005400568 MODEL 8733975 protein-coding Psen1 presenilin 1 ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); aspartic-type endopeptidase activity (ortholog); ATPase binding (ortholog); INVOLVED IN amyloid precursor protein catabolic process (ortholog); amyloid precursor protein metabolic process (ortholog); amyloid-beta formation (ortholog); PARTICIPATES IN Notch signaling pathway; syndecan signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Alzheimer's disease 3 (ortholog); Alzheimer's disease 4 (ortholog); FOUND IN aggresome (ortholog); axon (ortholog); cell cortex (ortholog) NW_004955523 2128529 2210737 - 102029108 AGCD01068558;AGCD01068559;AGCD01068560;GBDF01040780;XM_005409427;XM_005409428;XR_001231938 XP_005409484;XP_005409485 MODEL 8786929 protein-coding Ptpn21 protein tyrosine phosphatase non-receptor type 21 ENCODES a protein that exhibits protein tyrosine phosphatase activity (ortholog); ASSOCIATED WITH myoepithelioma (ortholog); prostate cancer (ortholog) NW_004955438 11087906 11162592 - 102006283 AGCD01035224;AGCD01035225;AGCD01035226;AGCD01035227;GBDJ01312275;XM_005390257;XM_013517163;XM_013517164;XM_013517165;XM_013517166 XP_005390314;XP_013372617;XP_013372618;XP_013372619;XP_013372620 MODEL 8797129 pseudo LOC102021902 dnaJ homolog subfamily C member 21 pseudogene NW_004955509 2211423 2213015 - 102021902 AGCD01065993 MODEL 8872103 ncrna LOC102009790 uncharacterized LOC102009790 NW_004955403 20132939 20135472 - 102009790 AGCD01002154;GBDJ01243887;XR_259189 MODEL 8894167 protein-coding Tktl1 transketolase like 1 ENCODES a protein that exhibits transketolase activity (ortholog); FOUND IN cytosol (ortholog) NW_004955580 829653 851422 + 102027129 AGCD01075625;AGCD01075626;GBDF01008565;XM_005414185 XP_005414242 MODEL 8742958 protein-coding LOC102010954 leukocyte immunoglobulin-like receptor subfamily A member 5 NW_004955567 1373617 1378077 + 102010954 AGCD01074469;GBBH01148932;GBDK01175825;XM_013509300 XP_013364754 MODEL 8920865 ncrna LOC102010579 uncharacterized LOC102010579 NW_004955416 6320380 6345046 + 102010579 AGCD01016940;AGCD01016941;XR_260358 MODEL 8860547 trna Trnag-ccc transfer RNA glycine (anticodon CCC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955442;NW_004955424 16570981;14887366 16571051;14887436 +;+ 101978846 AGCD01024664;AGCD01037901 MODEL 9009179 protein-coding Sall3 spalt like transcription factor 3 INVOLVED IN forelimb morphogenesis (ortholog); hindlimb morphogenesis (ortholog); negative regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH Burkitt lymphoma (ortholog); Craniofacial Abnormalities (ortholog); gastrointestinal stromal tumor (ortholog) NW_004955402 62157988 62163977 + 102022445 AGCD01001636;GBCQ01019586;XM_005373104 XP_005373161 MODEL 8952717 pseudo LOC102012956 septin-2 pseudogene NW_004955474 8331644 8332821 - 102012956 AGCD01054549 MODEL 10231719 pseudo LOC106147169 nuclease-sensitive element-binding protein 1 pseudogene NW_004955408 3316059 3316890 - 106147169 AGCD01008053 MODEL 8839057 protein-coding Rcc1 regulator of chromosome condensation 1 ENCODES a protein that exhibits chromatin binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); histone binding (ortholog); INVOLVED IN chromosome segregation (ortholog); G1/S transition of mitotic cell cycle (ortholog); mitotic spindle organization (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); condensed nuclear chromosome (ortholog) NW_004955452 7612784 7643275 + 102017089 AGCD01044178;AGCD01044179;GBDF01004865;XM_005394955;XM_005394956;XM_013519490 XP_005395012;XP_005395013;XP_013374944 MODEL 8996224 protein-coding LOC102028109 taste receptor type 2 member 1-like NW_004955504 7364106 7375767 + 102028109 AGCD01064944;XM_005407099 XP_005407156 MODEL 8821663 pseudo LOC102026080 HORMA domain-containing protein 1-like NW_004955409 24899247 24900573 - 102026080 AGCD01010095 MODEL 9039010 protein-coding LOC102011813 keratin, type II cytoskeletal 74 NW_004955547 2973452 2981010 - 102011813 AGCD01072302;GBDF01116746;XM_005411949 XP_005412006 MODEL 8761047 ncrna LOC102003929 uncharacterized LOC102003929 NW_004955758 2514 8463 + 102003929 AGCD01078291;GBCB01086463;XR_001232596;XR_001232597 MODEL 8869745 protein-coding Lmo4 LIM domain only 4 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN motor neuron axon guidance (ortholog); negative regulation of protein-containing complex assembly (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; ASSOCIATED WITH anencephaly (ortholog); FOUND IN cell leading edge (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955423 6849542 6865928 - 102017889 AGCD01023588;AGCD01023589;GBDJ01075782;GBDK01018084;XM_005385115 XP_005385172 MODEL 9045561 protein-coding Plp1 proteolipid protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); structural constituent of myelin sheath (ortholog); INVOLVED IN AMPA selective glutamate receptor signaling pathway (ortholog); astrocyte development (ortholog); axon development (ortholog); ASSOCIATED WITH Chronic Relapsing Experimental Autoimmune Encephalomyelitis (ortholog); epilepsy (ortholog); Experimental Autoimmune Encephalomyelitis (ortholog); FOUND IN integrin alphav-beta3 complex (ortholog); myelin sheath (ortholog); plasma membrane (ortholog) NW_004955548 781522 797246 + 102028341 AGCD01072341;GBDK01179399;XM_005411997;XM_005411998 XP_005412054;XP_005412055 MODEL 9063625 protein-coding LOC102007164 zinc finger protein 709-like NW_004955569 1445074 1480352 + 102007164 AGCD01074655;AGCD01074656;GBDF01080557;XM_013509372;XM_013509373 XP_013364826;XP_013364827 MODEL 8980698 protein-coding Slc25a14 solute carrier family 25 member 14 ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); protein homodimerization activity (ortholog); proton transmembrane transporter activity (ortholog); INVOLVED IN inorganic anion transport (ortholog); regulation of cellular response to oxidative stress (ortholog); FOUND IN mitochondrial envelope (ortholog); mitochondrion (ortholog) NW_004955473 4697901 4731688 - 102007006 AGCD01053957;GBCE01089348;XM_005401236;XM_005401237;XM_005401238;XM_005401239;XM_013523087;XM_013523088 XP_005401293;XP_005401294;XP_005401295;XP_005401296;XP_013378541;XP_013378542 MODEL 8792492 protein-coding LOC102017859 C-type lectin domain family 4 member A-like NW_004955413 5371896 5380676 - 102017859 AGCD01013670;GBCE01108550;XM_005378875 XP_005378932 MODEL 9052859 protein-coding Slc9b1 solute carrier family 9 member B1 INVOLVED IN flagellated sperm motility (ortholog); regulation of intracellular pH (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN cytosol (ortholog); sperm principal piece (ortholog) NW_004955496 5586836 5637550 + 102014260 AGCD01062355;GBDF01050817;XM_005406240;XM_005406242;XM_013505380 XP_005406297;XP_005406299;XP_013360834 MODEL 39132084 snorna SNORA72 Small nucleolar RNA SNORA72 8931860 protein-coding Epc1 enhancer of polycomb homolog 1 ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); enzyme-substrate adaptor activity (ortholog); INVOLVED IN double-strand break repair via homologous recombination (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of gene expression, epigenetic (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH Neointima (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nuclear body (ortholog); nuclear membrane (ortholog) NW_004955429 23819261 23910279 - 102005825 AGCD01029081;AGCD01029082;AGCD01029083;GBCE01136615;XM_005387225;XM_013515434 XP_005387282;XP_013370888 MODEL 8897919 protein-coding Sema6c semaphorin 6C ENCODES a protein that exhibits semaphorin receptor binding (ortholog); INVOLVED IN axon guidance (ortholog); negative regulation of axon extension (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog) NW_004955588 490581 504436 - 102006845 AGCD01076114;AGCD01076115;GBCB01005149;GBDF01125414;XM_013509907 XP_013365361 MODEL 8788525 protein-coding Sox10 SRY-box transcription factor 10 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity (ortholog); INVOLVED IN cell differentiation (ortholog); cell maturation (ortholog); cellular response to progesterone stimulus (ortholog); ASSOCIATED WITH Hirschsprung's disease (ortholog); hypogonadotropic hypogonadism 7 with or without anosmia (ortholog); Kallmann syndrome (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); mitochondrial outer membrane (ortholog) NW_004955413 24313311 24323112 - 102013710 AGCD01014360;GBBH01007145;XM_005379237 XP_005379294 MODEL 9057252 protein-coding Sall4 spalt like transcription factor 4 INVOLVED IN embryonic limb morphogenesis (ortholog); gene expression (ortholog); heart development (ortholog); ASSOCIATED WITH Congenital Limb Deformities (ortholog); Craniofacial Abnormalities (ortholog); Duane retraction syndrome (ortholog); FOUND IN heterochromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955445 6824797 6841141 + 102017823 AGCD01039521;AGCD01039522;GBDF01028383;XM_005392290 XP_005392347 MODEL 9055737 ncrna LOC102015949 uncharacterized LOC102015949 NW_004955475 8524246 8594126 + 102015949 AGCD01055042;AGCD01055043;AGCD01055044;AGCD01055045;GBDK01312973;XR_263613 MODEL 8837526 protein-coding Sgcz sarcoglycan zeta ASSOCIATED WITH amphetamine abuse (ortholog); skin disease (ortholog); FOUND IN plasma membrane (ortholog); sarcoglycan complex (ortholog) NW_004955463 2114115 3127633 + 102013394 AGCD01049539;AGCD01049540;AGCD01049541;AGCD01049542;AGCD01049543;AGCD01049544;AGCD01049545;AGCD01049546;AGCD01049547;AGCD01049548;AGCD01049549;AGCD01049550;AGCD01049551;AGCD01049552;AGCD01049553;AGCD01049554;AGCD01049555;AGCD01049556;AGCD01049557;AGCD01049558;AGCD01049559;AGCD01049560;AGCD01049561;AGCD01049562;AGCD01049563;AGCD01049564;AGCD01049565;AGCD01049566;AGCD01049567;AGCD01049568;AGCD01049569;AGCD01049570;AGCD01049571;AGCD01049572;AGCD01049573;AGCD01049574;AGCD01049575;AGCD01049576;AGCD01049577;GBDF01041307;XM_005398345 XP_005398402 MODEL 8896745 ncrna LOC102023631 uncharacterized LOC102023631 NW_004955437 3113379 3136035 + 102023631 AGCD01034297;AGCD01034298;GBDF01124453;XR_001235051;XR_001235052;XR_261840 MODEL 8771261 protein-coding LOC102024620 CD209 antigen-like protein E NW_004955563 1541169 1545686 + 102024620 AGCD01074152;GBDK01148494;XM_013509177;XM_013509178;XM_013509179 XP_013364631;XP_013364632;XP_013364633 MODEL 8972327 protein-coding Rcc1l RCC1 like ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); rRNA binding (ortholog); INVOLVED IN mitochondrial fusion (ortholog); mitochondrial large ribosomal subunit assembly (ortholog); mitochondrial small ribosomal subunit assembly (ortholog); ASSOCIATED WITH Williams-Beuren syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrial membrane (ortholog) NW_004955456 13285753 13300244 - 102012283 AGCD01046583;AGCD01046584;AGCD01046585;GBBH01209062;GBDF01156653;XM_013520534 XP_013375988 MODEL 9003407 protein-coding Rab31 RAB31, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); Golgi to plasma membrane protein transport (ortholog); Golgi vesicle transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); severe acute respiratory syndrome (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); early phagosome membrane (ortholog) NW_004955402 2354399 2446537 - 102022140 AGCD01000076;AGCD01000077;AGCD01000078;AGCD01000079;GBDF01081715;XM_005372596;XM_013515338 XP_005372653;XP_013370792 MODEL 8784755 pseudo LOC102027438 olfactory receptor 5AK2-like NW_004955511 2038829 2049248 + 102027438 AGCD01066387 MODEL 9023550 ncrna LOC102011323 uncharacterized LOC102011323 NW_004955422 1718157 1721300 + 102011323 AGCD01022470;GBDF01161787;XR_260843 MODEL 8814870 protein-coding LOC102005700 uncharacterized LOC102005700 NW_004955470 11975332 11978904 - 102005700 AGCD01052916;GBCQ01088386;XM_013522705 XP_013378159 MODEL 8876868 protein-coding C1qtnf12 C1q and TNF related 12 ENCODES a protein that exhibits hormone activity (ortholog); INVOLVED IN negative regulation of gluconeogenesis (ortholog); negative regulation of inflammatory response (ortholog); positive regulation of D-glucose import across plasma membrane (ortholog); FOUND IN extracellular region (ortholog) NW_004955486 9541466 9545231 + 102028093 AGCD01059190;GBDF01279918;XM_005404246 XP_005404303 MODEL 8789364 protein-coding Pemt phosphatidylethanolamine N-methyltransferase ENCODES a protein that exhibits phosphatidylethanolamine binding (ortholog); phosphatidylethanolamine N-methyltransferase activity (ortholog); S-adenosylmethionine-dependent methyltransferase activity (ortholog); INVOLVED IN blastocyst hatching (ortholog); glycerophospholipid metabolic process (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN choline metabolic pathway; glycerophospholipid metabolic pathway; homocysteine metabolic pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); Experimental Liver Neoplasms (ortholog); liver cirrhosis (ortholog); FOUND IN brush border membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955577 365031 443138 + 102017077 AGCD01075392;AGCD01075393;AGCD01075394;AGCD01075395;GBDF01001294;XM_005413968;XM_005413970;XM_005413971;XM_013509631 XP_005414025;XP_005414027;XP_005414028;XP_013365085 MODEL 8752632 protein-coding LOC102021903 olfactory receptor 1038 NW_004955511 1563422 1564360 - 102021903 AGCD01066371;XM_005408237 XP_005408294 MODEL 8922241 protein-coding Ptpn22 protein tyrosine phosphatase non-receptor type 22 ENCODES a protein that exhibits kinase binding (ortholog); phosphatase activity (ortholog); protein tyrosine kinase binding (ortholog); INVOLVED IN cellular response to muramyl dipeptide (ortholog); lipopolysaccharide-mediated signaling pathway (ortholog); negative regulation of autophagy (ortholog); ASSOCIATED WITH Addison's disease (ortholog); alopecia areata (ortholog); Anti-Neutrophil Cytoplasmic Antibody-Associated Vasculitis (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); nucleus (ortholog) NW_004955435 17082762 17139067 - 102014165 AGCD01033345;GBDK01393931;XM_005388984 XP_005389041 MODEL 8777776 protein-coding Rnf103 ring finger protein 103 ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN ERAD pathway (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH depressive disorder (ortholog); systemic juvenile rheumatoid arthritis (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955424 1097981 1161267 + 102016823 AGCD01024231;AGCD01024232;GBCB01042732;GBDF01189093;XM_005385393;XM_013514632 XP_005385450;XP_013370086 MODEL 8709998 protein-coding Prkrip1 PRKR interacting protein 1 ENCODES a protein that exhibits double-stranded RNA binding (ortholog); protein kinase binding (ortholog); protein kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of phosphorylation (ortholog); negative regulation of protein kinase activity (ortholog); renal system process (ortholog); FOUND IN actin cytoskeleton (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955456 15188211 15216267 - 102016022 AGCD01046663;AGCD01046664;GBDF01085713;XM_005396837 XP_005396894 MODEL 8999270 protein-coding Wfikkn2 WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2 ENCODES a protein that exhibits receptor antagonist activity (ortholog); transforming growth factor beta binding (ortholog); INVOLVED IN muscle cell development (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); roof of mouth development (ortholog); FOUND IN extracellular region (ortholog) NW_004955451 10976748 10982482 - 102029352 AGCD01043338;GBCB01111308;XM_005394122 XP_005394179 MODEL 9007979 ncrna LOC102019398 uncharacterized LOC102019398 NW_004955489 1974116 1979078 + 102019398 AGCD01059856;GBDF01111748;XR_264014;XR_264015 MODEL 8796651 trna Trnag-gcc transfer RNA glycine (anticodon GCC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978844 AGCD01042230;AGCD01043711;AGCD01049456;AGCD01051475;AGCD01057629;AGCD01058153;AGCD01058182;AGCD01067339;AGCD01074351 MODEL 9012389 ncrna LOC102006794 uncharacterized LOC102006794 NW_004955426 2684376 2772914 - 102006794 AGCD01026053;AGCD01026054;XR_261179 MODEL 8995004 pseudo LOC102012958 retinol dehydrogenase 14 pseudogene NW_004955476 11736864 11740171 - 102012958 AGCD01055474 MODEL 10305060 ncrna LOC106150009 uncharacterized LOC106150009 NW_004955460 13690622 13695162 - 106150009 AGCD01048718;GBDK01350798;XR_001236522 MODEL 8745953 protein-coding Tram2 translocation associated membrane protein 2 INVOLVED IN collagen biosynthetic process (ortholog); protein insertion into ER membrane (ortholog) NW_004955411 5598612 5620685 + 102028508 AGCD01011652;AGCD01011653;AGCD01011654;GBBH01091491;XM_005377655 XP_005377712 MODEL 8783151 ncrna LOC102026445 uncharacterized LOC102026445 NW_004955424 17960855 17986306 - 102026445 AGCD01024773;AGCD01024774;AGCD01024775;GBDJ01335005;XR_001234241;XR_001234242 MODEL 8769454 pseudo LOC102028110 poly(rC)-binding protein 2-like NW_004955505 3598546 3602201 - 102028110 AGCD01065032;AGCD01065033 MODEL 8848071 protein-coding Rhag Rh associated glycoprotein ENCODES a protein that exhibits ammonium channel activity (ortholog); ankyrin binding (ortholog); carbon dioxide transmembrane transporter activity (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); carbon dioxide transmembrane transport (ortholog); carbon dioxide transport (ortholog); ASSOCIATED WITH hemolytic anemia (ortholog); overhydrated hereditary stomatocytosis (ortholog); Rh deficiency syndrome (ortholog); FOUND IN ankyrin-1 complex (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955411 8335223 8354430 + 102006754 AGCD01011727;GBBH01082480;XM_005377673 XP_005377730 MODEL 39133389 snrna U4 U4 spliceosomal RNA 8787129 protein-coding Smyd2 SET and MYND domain containing 2 ENCODES a protein that exhibits histone H3K36 methyltransferase activity (ortholog); p53 binding (ortholog); protein-lysine N-methyltransferase activity (ortholog); INVOLVED IN heart development (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN histone modification pathway; methionine cycle/metabolic pathway; p53 signaling pathway; ASSOCIATED WITH Esophageal Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955406 3467123 3509156 - 102013144 AGCD01005672;GBDI01176706;XM_005375447 XP_005375504 MODEL 8769289 protein-coding Rapgef3 Rap guanine nucleotide exchange factor 3 ENCODES a protein that exhibits cAMP binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN artery development (ortholog); associative learning (ortholog); cellular response to cAMP (ortholog); PARTICIPATES IN adenosine signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); amyloidosis (ortholog); Arterial Injury (ortholog); FOUND IN apical part of cell (ortholog); axon terminus (ortholog); basal plasma membrane (ortholog) NW_004955500 6655056 6674311 - 102021367 AGCD01063889;GBCE01117886;GBDK01021143;XM_005406623 XP_005406680 MODEL 9051726 protein-coding Pcnx3 pecanex 3 ASSOCIATED WITH systemic lupus erythematosus (ortholog) NW_004955422 19628243 19650163 - 102004720 AGCD01023024;GBCQ01098466;XM_005384474;XM_013513859;XM_013513860;XM_013513861;XM_013513862;XM_013513863;XR_001233888 XP_005384531;XP_013369313;XP_013369314;XP_013369315;XP_013369316;XP_013369317 MODEL 9045523 protein-coding Psen2 presenilin 2 ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); endopeptidase activity (ortholog); INVOLVED IN amyloid precursor protein catabolic process (ortholog); amyloid-beta formation (ortholog); amyloid-beta metabolic process (ortholog); PARTICIPATES IN altered Notch signaling pathway involving the macromolecules modifying the main players; Alzheimer's disease pathway; Notch signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Alzheimer's disease 4 (ortholog); asphyxia neonatorum (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cytosol (ortholog) NW_004955406 5727367 5748798 + 102025650 AGCD01005739;GBCB01041147;GBCE01074852;XM_005374755 XP_005374812 MODEL 10245478 ncrna LOC106148265 uncharacterized LOC106148265 NW_004955418 27095323 27098233 - 106148265 AGCD01019403;GBDK01215735;XR_001233548 MODEL 8951388 ncrna LOC102010581 uncharacterized LOC102010581 NW_004955478 6558216 6561171 + 102010581 AGCD01055900;GBDF01140094;XR_001230864;XR_263703 MODEL 8900280 protein-coding Rcc2 regulator of chromosome condensation 2 ENCODES a protein that exhibits microtubule binding (ortholog); protein domain specific binding (ortholog); protein kinase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); chromosome passenger complex localization to kinetochore (ortholog); establishment of protein localization (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN chromosome (ortholog); chromosome, centromeric core domain (ortholog); early endosome membrane (ortholog) NW_004955527 1490179 1512111 + 102019102 AGCD01069404;AGCD01069405;AGCD01069406;AGCD01069407;GBCE01077274;GBDJ01083813;XM_013507406 XP_013362860 MODEL 9014710 ncrna LOC102010958 uncharacterized LOC102010958 NW_004955402 5775147 5790716 - 102010958 AGCD01000140;AGCD01000141;GBDI01357888;XR_259032 MODEL 8752232 ncrna LOC102005701 uncharacterized LOC102005701 NW_004955471 8033027 8043382 + 102005701 AGCD01053175;GBDF01122898;XR_263529 MODEL 8822073 pseudo LOC102017862 olfactory receptor 502-like NW_004955414 23701731 23702443 - 102017862 AGCD01015518 MODEL 9038430 protein-coding Tktl2 transketolase like 2 FOUND IN cytoplasm (ortholog) NW_004955403 41526329 41528591 + 102015167 AGCD01002723;GBDK01218247;XM_013515256 XP_013370710 MODEL 10359855 protein-coding LOC106147170 endochitinase A-like NW_004955524 3195878 3199487 + 106147170 AGCD01068867;GBDJ01272871;XM_013507262 XP_013362716 MODEL 8795159 protein-coding Epc2 enhancer of polycomb 2 INVOLVED IN positive regulation of double-strand break repair via homologous recombination (ortholog); regulation of cell cycle (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH type 2 diabetes mellitus (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nucleosome (ortholog) NW_004955440 14573960 14645171 + 102026045 AGCD01036473;GBDK01240424;XM_005390801 XP_005390858 MODEL 8979867 protein-coding Slc9b2 solute carrier family 9 member B2 ENCODES a protein that exhibits identical protein binding (ortholog); lithium:proton antiporter activity (ortholog); sodium:proton antiporter activity (ortholog); INVOLVED IN clathrin-dependent endocytosis (ortholog); flagellated sperm motility (ortholog); lithium ion transport (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); endosome membrane (ortholog) NW_004955496 5532113 5587801 + 102012874 AGCD01062355;XM_005406234;XM_005406235;XM_005406236;XM_005406237;XM_013505377;XM_013505378;XM_013505379 XP_005406291;XP_005406292;XP_005406293;XP_005406294;XP_013360831;XP_013360832;XP_013360833 MODEL 9022864 protein-coding Sema6d semaphorin 6D ENCODES a protein that exhibits receptor ligand activity (ortholog); semaphorin receptor binding (ortholog); INVOLVED IN negative regulation of axon extension (ortholog); negative regulation of smooth muscle cell migration (ortholog); positive regulation of smooth muscle cell migration (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); substance-related disorder (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog) NW_004955409 6086178 6143702 - 102015930 AGCD01009330;GBCE01134341;XM_005376714;XM_005376717;XM_005376718;XM_005376719;XM_005376720;XM_013510307;XM_013510308;XM_013510309;XM_013510310;XM_013510311 XP_005376771;XP_005376774;XP_005376775;XP_005376776;XP_005376777;XP_013365761;XP_013365762;XP_013365763;XP_013365764;XP_013365765 MODEL 8898873 trna Trnag-ucc transfer RNA glycine (anticodon UCC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955568;NW_004955462;NW_004955467;NW_004955495 59658;14719232;8709239;4280962 59729;14719303;8709310;4281033 -;-;-;- 101978845 AGCD01049456;AGCD01051466;AGCD01061910;AGCD01074502 MODEL 8844853 ncrna LOC102011816 uncharacterized LOC102011816 NW_004955443 10236461 10240981 - 102011816 AGCD01038372;GBDF01078584;XR_262203 MODEL 9059065 protein-coding LOC102030580 protein FRA10AC1-like NW_004955569 863579 864882 + 102030580 AGCD01074622;GBCC01015907;XM_005413494;XM_013509374 XP_005413551;XP_013364828 MODEL 9042276 protein-coding LOC102029170 hemoglobin subunit epsilon-1-like NW_004955414 21195694 21197058 - 102029170 AGCD01015410;XM_013511751 XP_013367205 MODEL 8900337 protein-coding Lmo7 LIM domain 7 ENCODES a protein that exhibits actinin binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN actin cytoskeleton (ortholog); adherens junction (ortholog); apical plasma membrane (ortholog) NW_004955404 31197156 31388571 - 102020628 AGCD01004017;AGCD01004018;GBCQ01064193;GBDF01082235;XM_005374167;XM_005374168;XM_005374169;XM_013516543;XM_013516544;XM_013516549;XM_013516551;XM_013516553;XM_013516561;XM_013516563;XM_013516566;XM_013516569;XM_013516572 XP_005374224;XP_005374225;XP_005374226;XP_013371997;XP_013371998;XP_013372003;XP_013372005;XP_013372007;XP_013372015;XP_013372017;XP_013372020;XP_013372023;XP_013372026 MODEL 8774178 protein-coding LOC102026446 melanoma-associated antigen 8-like NW_004955498 5244222 5245229 - 102026446 AGCD01063063;XM_005406490 XP_005406547 MODEL 8839711 protein-coding LOC102007165 arylacetamide deacetylase-like NW_004955448 3194027 3221003 - 102007165 AGCD01041312;AGCD01041313;GBCC01001426;XM_005393039 XP_005393096 MODEL 8932545 pseudo LOC102023635 actin, cytoplasmic 1-like NW_004955543 956118 957366 + 102023635 AGCD01071608 MODEL 8820415 protein-coding Slc25a15 solute carrier family 25 member 15 ENCODES a protein that exhibits antiporter activity (ortholog); arginine:ornithine antiporter activity (ortholog); L-arginine transmembrane transporter activity (ortholog); INVOLVED IN L-arginine transmembrane transport (ortholog); L-lysine transmembrane transport (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; argininosuccinic aciduria pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); Cardiac Arrhythmias (ortholog); citrullinemia (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955431 5673207 5691615 - 102012116 AGCD01030038;GBCQ01031607;GBDF01083462;XM_013515895 XP_013371349 MODEL 8749865 protein-coding Ppp1r3b protein phosphatase 1 regulatory subunit 3B ENCODES a protein that exhibits [phosphorylase] phosphatase activity (ortholog); enzyme binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN negative regulation of glycogen catabolic process (ortholog); positive regulation of glycogen biosynthetic process (ortholog); regulation of glycogen biosynthetic process (ortholog); PARTICIPATES IN glycogen biosynthetic pathway; glycogen degradation pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN glycogen granule (ortholog); protein phosphatase type 1 complex (ortholog) NW_004955463 5208127 5220970 - 102019783 AGCD01049637;GBBH01150362;XM_005398360;XM_005398361 XP_005398417;XP_005398418 MODEL 9022818 ncrna LOC102011333 uncharacterized LOC102011333 NW_004955424 5069373 5154243 + 102011333 AGCD01024384;GBDF01080540;XR_001234147;XR_261043 MODEL 39132866 snorna SNORA73 Small nucleolar RNA SNORA73 family 8835267 protein-coding LOC102008663 butyrophilin subfamily 3 member A1-like NW_004955437 1060528 1076067 + 102008663 AGCD01034189;XM_013516725 XP_013372179 MODEL 8818448 pseudo LOC102026081 zinc finger protein 23 pseudogene NW_004955460 9831900 9835067 - 102026081 AGCD01048556 MODEL 10081600 protein-coding LOC106148266 uncharacterized LOC106148266 NW_004955418 29761808 29768628 + 106148266 AGCD01019481;GBDF01045797;XM_013513068;XM_013513069;XM_013513070 XP_013368522;XP_013368523;XP_013368524 MODEL 8927624 protein-coding Samd1 sterile alpha motif domain containing 1 ENCODES a protein that exhibits chromatin binding (ortholog); low-density lipoprotein particle binding (ortholog); INVOLVED IN foam cell differentiation (ortholog); lipoprotein lipid oxidation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); FOUND IN chromosome (ortholog); extracellular region (ortholog); nucleus (ortholog) NW_004955415 32789937 32791421 - 102016804 AGCD01016733;GBCB01057825;GBCQ01129414;XM_013512353 XP_013367807 MODEL 9008798 protein-coding Prkx protein kinase cAMP-dependent X-linked catalytic subunit ENCODES a protein that exhibits cAMP-dependent protein kinase activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell adhesion (ortholog); cell-substrate adhesion (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955499 2167252 2227510 - 102013848 AGCD01063419;AGCD01063420;AGCD01063421;AGCD01063422;AGCD01063423;AGCD01063424;AGCD01063425;AGCD01063426;AGCD01063427;AGCD01063428;GBBH01002093;GBCQ01174628;XM_013505599 XP_013361053 MODEL 8743001 ncrna LOC102015952 uncharacterized LOC102015952 NW_004955478 10401955 10406758 + 102015952 AGCD01056132;AGCD01056133;GBDF01234513;XR_263714 MODEL 9062695 pseudo LOC102028117 olfactory receptor 5AK2-like NW_004955511 2088955 2089943 + 102028117 AGCD01066389;AGCD01066390 MODEL 8969745 ncrna LOC102024623 uncharacterized LOC102024623 NW_004955445 11329814 11335144 - 102024623 AGCD01039687;GBCE01071386;XR_001235598;XR_262329 MODEL 8853797 protein-coding Sgf29 SAGA complex associated factor 29 ENCODES a protein that exhibits histone H3K36me3 reader activity (ortholog); histone H3K4me3 reader activity (ortholog); methylation-dependent protein binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of cell cycle (ortholog); regulation of cell division (ortholog); PARTICIPATES IN histone modification pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Chemical and Drug Induced Liver Injury (ortholog); diabetic retinopathy (ortholog); FOUND IN ATAC complex (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955493 6759426 6774796 + 102018505 AGCD01061137;GBCB01041570;XM_005405175;XM_005405176;XM_005405177 XP_005405232;XP_005405233;XP_005405234 MODEL 8768812 pseudo LOC102027439 kinesin-associated protein 3-like NW_004955430 3613679 3616420 - 102027439 AGCD01029221 MODEL 8829283 protein-coding Slc9c1 solute carrier family 9 member C1 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN motile cilium (ortholog) NW_004955427 12541396 12644543 - 102025708 AGCD01027218;AGCD01027219;AGCD01027220;AGCD01027221;AGCD01027222;GBDF01051841;XM_005386384;XM_005386385;XM_013515039 XP_005386441;XP_005386442;XP_013370493 MODEL 8852062 pseudo LOC102021905 ATP synthase mitochondrial F1 complex assembly factor 1 pseudogene NW_004955432 3069152 3074952 + 102021905 AGCD01030628 MODEL 8784277 protein-coding Smyd3 SET and MYND domain containing 3 ENCODES a protein that exhibits histone H3K36 dimethyltransferase activity (ortholog); histone H4 methyltransferase activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); establishment of protein localization (ortholog); myotube cell development (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH amphetamine abuse (ortholog); nonprogressive cerebellar ataxia with mental retardation (ortholog); FOUND IN nucleus (ortholog) NW_004955406 8768365 9417612 - 102010332 AGCD01005807;AGCD01005808;AGCD01005809;AGCD01005810;AGCD01005811;AGCD01005812;AGCD01005813;AGCD01005814;AGCD01005815;AGCD01005816;AGCD01005817;AGCD01005818;AGCD01005819;GBCE01049807;XM_005374789 XP_005374846 MODEL 8944247 protein-coding C1qtnf2 C1q and TNF related 2 ENCODES a protein that exhibits identical protein binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN positive regulation of D-glucose import across plasma membrane (ortholog); positive regulation of fatty acid oxidation (ortholog); positive regulation of glycogen biosynthetic process (ortholog); FOUND IN extracellular region (ortholog); protein-containing complex (ortholog) NW_004955408 14219263 14266832 - 102026189 AGCD01008389;AGCD01008390;AGCD01008391;GBDI01008429;XM_005376261;XM_005376262;XM_005376264;XM_013508952;XM_013508968 XP_005376318;XP_005376319;XP_005376321;XP_013364406;XP_013364422 MODEL 8859128 protein-coding Penk proenkephalin ENCODES a protein that exhibits opioid peptide activity (ortholog); receptor ligand activity (ortholog); INVOLVED IN aggressive behavior (ortholog); behavioral fear response (ortholog); behavioral response to ethanol (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); Anhedonia (ortholog); FOUND IN perikaryon; axon (ortholog); axon terminus (ortholog) NW_004955454 15425712 15426685 - 102007624 AGCD01045494;GBDJ01079314;GBDJ01079318;XM_005396126 XP_005396183 MODEL 8917071 protein-coding Psenen presenilin enhancer, gamma-secretase subunit ENCODES a protein that exhibits endopeptidase activator activity (ortholog); enzyme binding (ortholog); molecular function inhibitor activity (ortholog); INVOLVED IN amyloid precursor protein catabolic process (ortholog); amyloid precursor protein metabolic process (ortholog); amyloid-beta formation (ortholog); PARTICIPATES IN Notch signaling pathway; syndecan signaling pathway; ASSOCIATED WITH Familial Acne Inversa 2 (ortholog); Familial Hidradenitis Suppurativa (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); gamma-secretase complex (ortholog) NW_004955468 2805153 2806573 - 102023891 AGCD01051838;GBCE01000146;XM_005399975;XM_013522407 XP_005400032;XP_013377861 MODEL 9012261 protein-coding Rnf11 ring finger protein 11 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN protein autoubiquitination (ortholog); ubiquitin-dependent protein catabolic process (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; FOUND IN ubiquitin ligase complex (ortholog) NW_004955464 7745835 7787347 - 102027827 AGCD01050068;AGCD01050069;GBDF01004434;XM_005398777 XP_005398834 MODEL 8884071 protein-coding LOC102019004 uncharacterized LOC102019004 NW_004955593 267249 672416 + 102019004 AGCD01076371;AGCD01076372;AGCD01076373;AGCD01076374;AGCD01076375;AGCD01076376;AGCD01076377;AGCD01076378;AGCD01076379;AGCD01076380;AGCD01076381;AGCD01076382;AGCD01076383;AGCD01076384;AGCD01076385;AGCD01076386;AGCD01076387;AGCD01076388;AGCD01076389;AGCD01076390;AGCD01076391;AGCD01076392;AGCD01076393;AGCD01076394;AGCD01076395;GBDF01262450;GBDJ01343577;XM_005414632 XP_005414689 MODEL 9029607 protein-coding Wfs1 wolframin ER transmembrane glycoprotein ENCODES a protein that exhibits ATPase binding (ortholog); calcium-dependent protein binding (ortholog); calmodulin binding (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); endoplasmic reticulum calcium ion homeostasis (ortholog); endoplasmic reticulum unfolded protein response (ortholog); ASSOCIATED WITH Auditory Neuropathy (ortholog); autistic disorder (ortholog); autosomal dominant nonsyndromic deafness (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); secretory granule (ortholog) NW_004955514 3902508 3924281 - 102020042 AGCD01067119;AGCD01067120;AGCD01067121;GBCB01055926;GBDK01133953;XM_013506848 XP_013362302 MODEL 8976686 protein-coding LOC102003930 BPI fold-containing family C protein-like NW_004957031 166 1202 - 102003930 AGCD01080427;XM_005415220 XP_005415277 MODEL 8915499 pseudo LOC102012960 E3 ubiquitin-protein ligase Mdm2 pseudogene NW_004955416 14407621 14422095 - 102012960 AGCD01017262;AGCD01017263;AGCD01017264 MODEL 8957407 pseudo LOC102017864 selenoprotein K-like NW_004955415 7938080 7938777 - 102017864 AGCD01016059 MODEL 8772359 protein-coding LOC102019399 left-right determination factor 1-like NW_004955489 156460 160630 - 102019399 AGCD01059780;AGCD01059781;GBDJ01029000;GBDJ01388107;XM_013504465 XP_013359919 MODEL 8711878 pseudo LOC102006795 nuclear receptor subfamily 5 group A member 2 pseudogene NW_004955503 337968 338545 + 102006795 AGCD01064497 MODEL 8791634 protein-coding Trank1 tetratricopeptide repeat and ankyrin repeat containing 1 ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); bipolar disorder (ortholog) NW_004955421 3707510 3852886 - 102029868 AGCD01021665;AGCD01021666;AGCD01021667;AGCD01021668;AGCD01021669;AGCD01021670;AGCD01021671;GBDK01237538;XM_005383682;XM_013513764;XM_013513765;XM_013513766 XP_005383739;XP_013369218;XP_013369219;XP_013369220 MODEL 8946473 protein-coding Rccd1 RCC1 domain containing 1 ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN chromosome (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955416 15013595 15020038 + 102013932 AGCD01017295;AGCD01017296;GBBH01229064;GBCQ01035929;XM_013512477 XP_013367931 MODEL 39133391 snrna U4 U4 spliceosomal RNA 10238309 protein-coding LOC106147171 translation initiation factor IF-2-like NW_004955524 3232131 3233346 + 106147171 AGCD01068869;GBDI01105569;XM_013507265 XP_013362719 MODEL 8942963 protein-coding Plp2 proteolipid protein 2 ENCODES a protein that exhibits chemokine binding (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955543 658617 662441 + 102009544 AGCD01071597;AGCD01071598;GBDK01020755;GBDK01020756;XM_005411327 XP_005411384 MODEL 8895955 protein-coding Tlcd1 TLC domain containing 1 INVOLVED IN membrane assembly (ortholog); phospholipid homeostasis (ortholog); plasma membrane organization (ortholog); FOUND IN plasma membrane (ortholog) NW_004955481 4429923 4433147 + 102022289 AGCD01056937;AGCD01056938;GBBH01123169;GBCQ01100660;XM_005402717 XP_005402774 MODEL 8764212 protein-coding Rab32 RAB32, member RAS oncogene family ENCODES a protein that exhibits AP-1 adaptor complex binding (ortholog); AP-2 adaptor complex binding (ortholog); AP-3 adaptor complex binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); endosome to melanosome transport (ortholog); melanosome assembly (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); Experimental Liver Cirrhosis (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN early endosome (ortholog); early endosome lumen (ortholog); endoplasmic reticulum (ortholog) NW_004955436 14171123 14177255 - 102005504 AGCD01033868;GBCC01045894;GBCQ01062627;XM_013516677 XP_013372131 MODEL 9051278 protein-coding LOC102011817 40S ribosomal protein S27-like NW_004955444 12300883 12301137 - 102011817 AGCD01039067;XM_005392136 XP_005392193 MODEL 8725372 protein-coding Samd10 sterile alpha motif domain containing 10 NW_004955528 279481 284386 + 102010090 AGCD01069523;AGCD01069524;GBCE01142429;GBDK01284591;XM_013507483 XP_013362937 MODEL 9023164 pseudo LOC102026447 ras-related protein Rab-5A pseudogene NW_004955424 16044521 16045182 - 102026447 AGCD01024737 MODEL 8819788 protein-coding Lmod1 leiomodin 1 INVOLVED IN actin nucleation (ortholog); positive regulation of actin filament polymerization (ortholog); ASSOCIATED WITH coronary artery disease (ortholog); endometriosis (ortholog); intestinal pseudo-obstruction (ortholog); FOUND IN actin filament (ortholog); myofibril (ortholog); sarcomere (ortholog) NW_004955406 37967098 38012908 - 102019980 AGCD01006581;AGCD01006582;GBDF01014788;XM_005375196 XP_005375253 MODEL 8947729 protein-coding Pcnx4 pecanex 4 NW_004955466 9572547 9607544 - 102020785 AGCD01051047;GBCE01188394;XM_005399186;XM_013521992;XM_013521993;XM_013521994 XP_005399243;XP_013377446;XP_013377447;XP_013377448 MODEL 8898264 protein-coding Ptpn23 protein tyrosine phosphatase non-receptor type 23 ENCODES a protein that exhibits protein kinase binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN cilium assembly (ortholog); early endosome to late endosome transport (ortholog); endocytic recycling (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); NEURODEVELOPMENTAL DISORDER AND STRUCTURAL BRAIN ANOMALIES WITH OR WITHOUT SEIZURES AND SPASTICITY (ortholog); FOUND IN ciliary basal body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955420 24869737 24897196 - 102014365 AGCD01021337;AGCD01021338;GBDF01119078;XM_005383401 XP_005383458 MODEL 8921651 protein-coding LOC102005702 chromosome unknown open reading frame, human C11orf58 NW_004955414 31621806 31642993 + 102005702 AGCD01015759;GBDF01005761;XM_005380367;XM_005380368 XP_005380424;XP_005380425 MODEL 8946485 protein-coding Sox11 SRY-box transcription factor 11 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN closure of optic fissure (ortholog); cornea development in camera-type eye (ortholog); embryonic digestive tract morphogenesis (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Coffin-Siris syndrome (ortholog); Coffin-Siris syndrome 9 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955487 2678961 2680869 - 102014907 AGCD01059264;XM_005404366 XP_005404423 MODEL 10063069 protein-coding LOC106150010 translation initiation factor IF-2-like NW_004955460 7458336 7460814 + 106150010 AGCD01048482;GBDF01006275;XM_013521221 XP_013376675 MODEL 9039588 ncrna LOC102010585 uncharacterized LOC102010585 NW_004955418 15889079 15907996 + 102010585 AGCD01019113;GBDF01085813;XR_001233526;XR_001233527;XR_260559 MODEL 9025162 protein-coding Slc9c2 solute carrier family 9 member C2 (putative) FOUND IN plasma membrane (ortholog) NW_004955406 13734098 13838966 - 102006207 AGCD01005950;AGCD01005951;AGCD01005952;AGCD01005953;AGCD01005954;GBDF01119589;XM_013520788;XM_013520790 XP_013376242;XP_013376244 MODEL 8856600 ncrna LOC102028763 uncharacterized LOC102028763 NW_004955422 5203360 5211297 - 102028763 AGCD01022566;GBDF01182757;XR_260854 MODEL 8951490 protein-coding Rnf111 ring finger protein 111 ENCODES a protein that exhibits SMAD binding (ortholog); SUMO polymer binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN pattern specification process (ortholog); positive regulation of protein ubiquitination (ortholog); positive regulation of transforming growth factor beta receptor signaling pathway (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH primary ovarian insufficiency (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955450 15590053 15651344 - 102014101 AGCD01042797;AGCD01042798;AGCD01042799;AGCD01042800;GBDJ01272159;XM_005393835;XM_013518871;XM_013518872;XM_013518873 XP_005393892;XP_013374325;XP_013374326;XP_013374327 MODEL 8909756 protein-coding Sema7a semaphorin 7A (JohnMiltonHagen blood group) ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN axon extension (ortholog); integrin-mediated signaling pathway (ortholog); neuron projection development (ortholog); ASSOCIATED WITH Progressive Familial Intrahepatic Cholestasis 11 (ortholog); FOUND IN external side of plasma membrane (ortholog); GABA-ergic synapse (ortholog); presynapse (ortholog) NW_004955450 3401732 3424547 + 102014629 AGCD01042432;AGCD01042433;AGCD01042434;GBBH01193875;GBDK01084141;XM_005393558;XM_013519016 XP_005393615;XP_013374470 MODEL 9064994 pseudo LOC102030581 WD repeat domain phosphoinositide-interacting protein 3-like NW_004955446 7417586 7419399 + 102030581 AGCD01040113 MODEL 8987961 protein-coding LOC102026085 zinc finger protein 655-like NW_004955460 15205776 15222996 + 102026085 AGCD01048771;AGCD01048772;GBDJ01187550;XM_013521181;XM_013521182;XM_013521183;XM_013521184;XM_013521185;XM_013521186;XM_013521188;XM_013521189;XM_013521190 XP_013376635;XP_013376636;XP_013376637;XP_013376638;XP_013376639;XP_013376640;XP_013376642;XP_013376643;XP_013376644 MODEL 8913441 protein-coding Prl prolactin INVOLVED IN cellular response to ethanol (ortholog); cellular response to hormone stimulus (ortholog); cellular response to hypoxia (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); adenoma (ortholog); alcohol dependence (ortholog); FOUND IN extracellular region (ortholog); secretory granule (ortholog) NW_004955483 4495257 4503377 + 102014360 AGCD01057742;GBCE01142445;XM_005403379 XP_005403436 MODEL 8960317 ncrna LOC102029171 uncharacterized LOC102029171 NW_004955470 10287001 10289422 - 102029171 AGCD01052860;AGCD01052861;XR_263490 MODEL 8758984 protein-coding Rapgef4 Rap guanine nucleotide exchange factor 4 ENCODES a protein that exhibits cAMP binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); calcium-ion regulated exocytosis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Burns (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); basolateral plasma membrane (ortholog) NW_004955449 2172354 2453367 - 102011601 AGCD01041823;AGCD01041824;AGCD01041825;AGCD01041826;AGCD01041827;GBDK01319992;XM_005393202;XM_005393203;XM_005393204;XM_005393205;XM_005393208;XM_013518783;XM_013518784;XM_013518785 XP_005393259;XP_005393260;XP_005393261;XP_005393262;XP_005393265;XP_013374237;XP_013374238;XP_013374239 MODEL 10076475 ncrna LOC106147172 uncharacterized LOC106147172 NW_004955524 3298016 3298956 - 106147172 AGCD01068879;GBDF01224074;XR_001231951 MODEL 8842976 ncrna LOC102007168 uncharacterized LOC102007168 NW_004955592 171448 185769 + 102007168 AGCD01076300;AGCD01076301;GBDK01432229;XR_265130 MODEL 8819590 protein-coding LOC102010960 zinc finger protein 154-like NW_004955584 561048 567412 + 102010960 AGCD01075948;GBDF01281692;XM_005414367 XP_005414424 MODEL 8828498 protein-coding Slc25a16 solute carrier family 25 member 16 ENCODES a protein that exhibits coenzyme A transmembrane transporter activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN coenzyme A transport (ortholog); mitochondrial coenzyme A transmembrane transport (ortholog); ASSOCIATED WITH Cerebral Visual Impairment and Intellectual Disability (ortholog); nonsyndromic congenital nail disorder (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955425 20705758 20739692 - 102023054 AGCD01025754;AGCD01025755;AGCD01025756;AGCD01025757;GBCQ01100435;XM_005386098 XP_005386155 MODEL 39132875 snorna SNORA73 Small nucleolar RNA SNORA73 family 8790503 protein-coding LOC102008665 dnaJ homolog subfamily B member 6-like NW_004955438 5105330 5113520 - 102008665 AGCD01035057;GBDF01094584;GBDF01237045;XM_013517150 XP_013372604 MODEL 8851991 protein-coding Psip1 PC4 and SRSF1 interacting protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); supercoiled DNA binding (ortholog); INVOLVED IN mRNA 5'-splice site recognition (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); response to heat (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); FOUND IN euchromatin (ortholog); heterochromatin (ortholog); nuclear periphery (ortholog) NW_004955434 18312646 18357753 - 102020276 AGCD01032562;GBDI01055139;XM_005388709;XM_005388710 XP_005388766;XP_005388767 MODEL 9017616 protein-coding Rhbdd1 rhomboid domain containing 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); peptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN cellular response to unfolded protein (ortholog); cellular response to UV (ortholog); ERAD pathway (ortholog); ASSOCIATED WITH pancreatic cancer (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum quality control compartment (ortholog) NW_004955453 7527090 7656689 - 102010767 AGCD01044747;AGCD01044748;AGCD01044749;GBDJ01117091;XM_005395453;XM_005395455;XM_005395456;XM_005395457;XM_005395458;XM_005395459;XM_005395460 XP_005395510;XP_005395512;XP_005395513;XP_005395514;XP_005395515;XP_005395516;XP_005395517 MODEL 8909017 pseudo LOC102012961 reactive oxygen species modulator 1 pseudogene NW_004955479 10848845 10849614 + 102012961 AGCD01056562 MODEL 9040876 protein-coding Whamm WASP homolog associated with actin, golgi membranes and microtubules ENCODES a protein that exhibits Arp2/3 complex binding (ortholog); microtubule binding (ortholog); small GTPase binding (ortholog); INVOLVED IN actin filament organization (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); focal adhesion assembly (ortholog); ASSOCIATED WITH Fanconi syndrome (ortholog); primary ovarian insufficiency (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle membrane (ortholog); cytosol (ortholog) NW_004955416 13825925 13849883 - 102005372 AGCD01017234;AGCD01017235;GBBH01172264;GBCB01026385;XM_013512488 XP_013367942 MODEL 8832127 ncrna LOC102006796 uncharacterized LOC102006796 NW_004955427 4093452 4098801 + 102006796 AGCD01026959;GBDF01145084;XR_261228 MODEL 8727317 protein-coding LOC102005703 double-strand break repair protein MRE11A-like NW_004955414 105311 171913 + 102005703 AGCD01014702;AGCD01014703;AGCD01014704;AGCD01014705;AGCD01014706;GBCE01032230;GBDF01042621;XM_013512034 XP_013367488 MODEL 8787420 ncrna LOC102027440 uncharacterized LOC102027440 NW_004955513 3990877 3998055 + 102027440 AGCD01066913;GBDJ01069162;XR_264472 MODEL 8886577 protein-coding Tlcd2 TLC domain containing 2 INVOLVED IN membrane assembly (ortholog); phospholipid homeostasis (ortholog); plasma membrane organization (ortholog); FOUND IN plasma membrane (ortholog) NW_004955481 1475748 1478447 + 102017659 AGCD01056833;GBDI01280068;XM_005402611 XP_005402668 MODEL 9055450 protein-coding LOC102028771 melanoma-associated antigen 10-like NW_004955498 7617843 7618820 - 102028771 AGCD01063153;GBDF01277149;GBDF01277150;XM_013505541 XP_013360995 MODEL 9031766 protein-coding LOC102009791 uncharacterized LOC102009791 NW_004955648 46741 47626 - 102009791 AGCD01077769;GBDF01075664;XM_005415051 XP_005415108 MODEL 8914688 protein-coding Ppp1r3c protein phosphatase 1 regulatory subunit 3C ENCODES a protein that exhibits [phosphorylase] phosphatase activity (ortholog); enzyme binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN glycogen biosynthetic process (ortholog); glycogen metabolic process (ortholog); regulation of glycogen biosynthetic process (ortholog); PARTICIPATES IN glycogen biosynthetic pathway; glycogen degradation pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); prostate cancer (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN cytosol (ortholog); glycogen granule (ortholog) NW_004955425 1606069 1611001 + 102007916 AGCD01025235;AGCD01025236;GBDI01326617;XM_005385829 XP_005385886 MODEL 8982027 ncrna LOC102021906 uncharacterized LOC102021906 NW_004955433 3118317 3132395 - 102021906 AGCD01031413;AGCD01031414;GBCB01121567;XR_261550 MODEL 8893173 protein-coding Epcam epithelial cell adhesion molecule ENCODES a protein that exhibits cadherin binding involved in cell-cell adhesion (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of cell-cell adhesion mediated by cadherin (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); Breast Cancer, Familial (ortholog); carcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); bicellular tight junction (ortholog) NW_004955441 14155084 14167584 + 102018032 AGCD01037179;AGCD01037180;AGCD01037181;AGCD01037182;GBCE01007173;GBCQ01011851;XM_013517611 XP_013373065 MODEL 8738402 protein-coding Samd11 sterile alpha motif domain containing 11 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); PH domain binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); retinal rod cell development (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); fundus dystrophy (ortholog); optic atrophy (ortholog); FOUND IN nucleus (ortholog); PRC1 complex (ortholog) NW_004955486 9763704 9781132 - 102007238 AGCD01059198;AGCD01059199;GBDI01105768;XM_005404271 XP_005404328 MODEL 9056547 protein-coding Smyd4 SET and MYND domain containing 4 ENCODES a protein that exhibits protein-lysine N-methyltransferase activity (ortholog); INVOLVED IN heart development (ortholog); ASSOCIATED WITH medulloblastoma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955481 1361963 1412669 + 102014451 AGCD01056830;AGCD01056831;AGCD01056832;GBDF01254095;XM_005402603;XM_013503458 XP_005402660;XP_013358912 MODEL 8941795 protein-coding LOC102019006 chromosome unknown open reading frame, human C20orf96 NW_004955597 155659 183450 - 102019006 AGCD01076545;AGCD01076546;GBDI01006441;XM_005414713;XM_005414714;XM_013510029;XM_013510030;XM_013510031;XM_013510032 XP_005414770;XP_005414771;XP_013365483;XP_013365484;XP_013365485;XP_013365486 MODEL 8838219 ncrna LOC102011818 uncharacterized LOC102011818 NW_004955567 1491834 1498408 + 102011818 AGCD01074476;GBDK01309694;XR_001232411;XR_001232412 MODEL 8842154 pseudo LOC102003933 pannexin-1 pseudogene NW_004955451 1471730 1473218 + 102003933 AGCD01042971 MODEL 9062659 protein-coding Pepd peptidase D ENCODES a protein that exhibits peptidase activity (ortholog); proline dipeptidase activity (ortholog); INVOLVED IN negative regulation of programmed cell death (ortholog); proteolysis (ortholog); ASSOCIATED WITH chronic ulcer of skin (ortholog); disease by infectious agent (ortholog); genetic disease (ortholog) NW_004955468 3147871 3277294 - 102027507 AGCD01051857;AGCD01051858;AGCD01051859;GBBH01004035;XM_013522477;XM_013522478 XP_013377931;XP_013377932 MODEL 8727359 protein-coding Rapgef5 Rap guanine nucleotide exchange factor 5 ENCODES a protein that exhibits GTP-dependent protein binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); dilated cardiomyopathy 1A (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955410 24525748 24716151 - 102007634 AGCD01011131;AGCD01011132;AGCD01011133;AGCD01011134;GBBH01203298;XM_005377379 XP_005377436 MODEL 8738159 ncrna LOC102015956 uncharacterized LOC102015956 NW_004955481 10026699 10028031 + 102015956 AGCD01057133;GBDK01357814;XR_001230929 MODEL 15036843 trna Trnah-aug transfer RNA histidine(anticodon AUG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978820 8952261 ncrna LOC102017871 uncharacterized LOC102017871 NW_004955416 29852903 29861728 + 102017871 AGCD01017668;GBDF01099351;XR_001233381;XR_260437 MODEL 8783033 pseudo LOC102019402 kinesin-associated protein 3 pseudogene NW_004955492 2924415 2926457 + 102019402 AGCD01060683 MODEL 8721618 protein-coding Rce1 Ras converting CAAX endopeptidase 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); exopeptidase activity (ortholog); INVOLVED IN CAAX-box protein maturation (ortholog); CAAX-box protein processing (ortholog); protein prenylation (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955422 18538251 18541322 - 102004171 AGCD01022951;GBCQ01101305;XM_005384377;XM_013513907;XM_013513908 XP_005384434;XP_013369361;XP_013369362 MODEL 8723102 protein-coding LOC102028119 epididymal-specific lipocalin-5-like NW_004955513 4872874 4874735 - 102028119 AGCD01066943;GBDI01034412;XM_013506593 XP_013362047 MODEL 8903191 protein-coding LOC102023639 olfactory receptor 11H6-like NW_004955550 690292 691122 + 102023639 AGCD01072515;XM_013508547 XP_013364001 MODEL 8791335 protein-coding Trap1 TNF receptor associated protein 1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); protein kinase binding (ortholog); INVOLVED IN negative regulation of cellular respiration (ortholog); negative regulation of intrinsic apoptotic signaling pathway in response to hydrogen peroxide (ortholog); translational attenuation (ortholog); ASSOCIATED WITH Disease Progression (ortholog); osteoarthritis (ortholog); Stomach Neoplasms (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrial matrix (ortholog) NW_004955442 13697471 13733161 + 102019206 AGCD01037786;GBDF01051870;XM_005391321;XM_005391323;XM_013517803 XP_005391378;XP_005391380;XP_013373257 MODEL 8866725 ncrna LOC102024625 uncharacterized LOC102024625 NW_004955448 8801047 8863960 - 102024625 AGCD01041450;AGCD01041451;AGCD01041452;GBDF01111681;XR_001235758;XR_262467 MODEL 8905245 protein-coding Sgip1 SH3GL interacting endocytic adaptor 1 ENCODES a protein that exhibits microtubule binding (ortholog); phospholipid binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN energy homeostasis (ortholog); plasma membrane tubulation (ortholog); positive regulation of eating behavior (ortholog); ASSOCIATED WITH intellectual disability (ortholog); FOUND IN AP-2 adaptor complex (ortholog); clathrin-coated pit (ortholog); clathrin-coated vesicle (ortholog) NW_004955423 24155401 24353166 - 102019712 AGCD01024031;AGCD01024032;AGCD01024033;AGCD01024034;AGCD01024035;GBDK01397860;XM_013514516;XM_013514517;XM_013514518;XM_013514519;XM_013514520 XP_013369970;XP_013369971;XP_013369972;XP_013369973;XP_013369974 MODEL 8738738 ncrna LOC102026093 uncharacterized LOC102026093 NW_004955413 1319222 1323485 - 102026093 AGCD01013519;AGCD01013520;XR_001232933;XR_001232934;XR_260047 MODEL 8789881 protein-coding Plpbp pyridoxal phosphate binding protein ASSOCIATED WITH early-onset vitamin B6-dependent epilepsy 1 (ortholog); genetic disease (ortholog); pyridoxine-dependent epilepsy (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955463 13467965 13498544 + 102012515 AGCD01049867;AGCD01049868;AGCD01049869;GBCQ01038272;XM_005398413;XM_005398414 XP_005398470;XP_005398471 MODEL 9055617 protein-coding Rab33a RAB33A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); INVOLVED IN antigen processing and presentation (ortholog); ASSOCIATED WITH prostate cancer (ortholog); X-linked deafness 5 (ortholog) NW_004955473 4875230 4891898 - 102009493 AGCD01053961;AGCD01053962;GBDJ01147195;XM_005401246;XM_005401247 XP_005401303;XP_005401304 MODEL 9008331 protein-coding LOC102026448 taste receptor type 2 member 1-like NW_004955504 6930619 6931515 - 102026448 AGCD01064931;XM_005407096 XP_005407153 MODEL 8868619 pseudo LOC102007169 N-acetylglucosamine-6-sulfatase pseudogene NW_004955402 44394601 44397598 - 102007169 AGCD01001113 MODEL 8835420 protein-coding LOC102010962 small proline-rich protein 3-like NW_004955592 393237 394484 - 102010962 AGCD01076311;GBDI01016409;XM_005414615 XP_005414672 MODEL 9036338 protein-coding Pcolce procollagen C-endopeptidase enhancer ENCODES a protein that exhibits collagen binding (ortholog); heparin binding (ortholog); peptidase activator activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); proteolysis (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); liver cirrhosis (ortholog) NW_004955573 299443 304672 - 102020730 AGCD01074973;GBDK01183556;XM_005413718;XM_013509473 XP_005413775;XP_013364927 MODEL 39132880 snorna SNORA73 Small nucleolar RNA SNORA73 family 10324504 ncrna LOC106148267 uncharacterized LOC106148267 NW_004955418 29602621 29605513 - 106148267 AGCD01019474;GBDF01248719;XR_001233555;XR_001233556 MODEL 39133393 snrna U4 U4 spliceosomal RNA 8997258 pseudo LOC102008668 protein S100-A10 pseudogene NW_004955547 477402 477949 + 102008668 AGCD01072162;XM_005411852 MODEL 8745834 protein-coding Sox12 SRY-box transcription factor 12 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN positive regulation of regulatory T cell differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); spinal cord development (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); protein-DNA complex (ortholog) NW_004955597 225796 229350 + 102026174 AGCD01076548;GBCB01087162;XM_013510026 XP_013365480 MODEL 9039599 protein-coding LOC102010591 acyl-CoA desaturase 1 NW_004955485 9758703 9773277 + 102010591 AGCD01058780;GBDK01014034;XM_005403913 XP_005403970 MODEL 8956572 ncrna LOC102011336 uncharacterized LOC102011336 NW_004955500 5251418 5257274 + 102011336 AGCD01063826;GBDJ01403986;XR_001231513;XR_264228 MODEL 8744759 protein-coding Rhbdd2 rhomboid domain containing 2 FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955456 14652995 14666155 + 102006543 AGCD01046647;AGCD01046648;GBDF01052883;XM_005396802 XP_005396859 MODEL 8797332 protein-coding LOC102030582 cuticle collagen 13-like NW_004955583 336216 350844 + 102030582 AGCD01075812;AGCD01075813;GBCB01105781;GBDK01281620;XM_013509776 XP_013365230 MODEL 8705053 protein-coding Prlh prolactin releasing hormone ENCODES a protein that exhibits neuropeptide hormone activity (ortholog); prolactin-releasing peptide receptor binding (ortholog); INVOLVED IN autonomic nervous system development (ortholog); eating behavior (ortholog); energy reserve metabolic process (ortholog); PARTICIPATES IN obesity pathway; ASSOCIATED WITH obesity (ortholog); FOUND IN cytoplasm (ortholog) NW_004955542 2765578 2768057 - 102008030 AGCD01071537;GBDK01287743;XM_005411227 XP_005411284 MODEL 8753437 pseudo LOC102011337 transcription elongation factor B polypeptide 1 pseudogene NW_004955502 352527 352808 - 102011337 AGCD01064237;XM_005406918 MODEL 9029164 protein-coding LOC102027444 phosphatidylinositol 3-kinase regulatory subunit beta NW_004955432 8380409 8382736 + 102027444 AGCD01030875;GBBH01088599;GBBH01088605;XM_013516066 XP_013371520 MODEL 8989246 protein-coding Slc25a17 solute carrier family 25 member 17 ENCODES a protein that exhibits ADP transmembrane transporter activity (ortholog); AMP transmembrane transporter activity (ortholog); ATP transmembrane transporter activity (ortholog); INVOLVED IN ATP transport (ortholog); fatty acid beta-oxidation (ortholog); fatty acid transport (ortholog); FOUND IN cytoplasm (ortholog); peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955413 26423805 26474158 - 102012523 AGCD01014441;AGCD01014442;AGCD01014443;AGCD01014444;AGCD01014445;GBDI01136067;XM_005379328 XP_005379385 MODEL 8949700 protein-coding Tlcd3a TLC domain containing 3A ASSOCIATED WITH Fraser syndrome 3 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955481 2283620 2292100 + 102025791 AGCD01056873;GBBH01007264;GBDF01128173;XM_005402638;XM_013503379 XP_005402695;XP_013358833 MODEL 8880724 protein-coding Plpp1 phospholipid phosphatase 1 ENCODES a protein that exhibits ceramide-1-phosphate phosphatase activity (ortholog); diacylglycerol diphosphate phosphatase activity (ortholog); lipid phosphatase activity (ortholog); INVOLVED IN ceramide metabolic process (ortholog); phospholipid catabolic process (ortholog); phospholipid dephosphorylation (ortholog); PARTICIPATES IN D-glycericacidemia pathway; Fabry disease pathway; familial lipoprotein lipase deficiency pathway; ASSOCIATED WITH Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); caveola (ortholog); membrane (ortholog) NW_004955446 12201678 12279992 + 102018446 AGCD01040227;AGCD01040228;GBCC01038817;GBDF01046744;XM_013518405 XP_013373859 MODEL 8928099 protein-coding Epcip exosomal polycystin 1 interacting protein ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mitocytosis (ortholog); FOUND IN extracellular exosome (ortholog); migrasome (ortholog); vesicle (ortholog) NW_004955407 32229108 32249097 - 102017952 AGCD01007671;GBDJ01114206;XM_005375674 XP_005375731 MODEL 8778540 protein-coding Pskh1 protein serine kinase H1 ENCODES a protein that exhibits protein kinase activity (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN determination of left/right symmetry (ortholog); heart development (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH Progressive Familial Intrahepatic Cholestasis 13 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955484 8784128 8813669 - 102020248 AGCD01058396;AGCD01058397;GBDK01196210;XM_005403614 XP_005403671 MODEL 8994755 protein-coding Samd12 sterile alpha motif domain containing 12 ASSOCIATED WITH familial adult myoclonic epilepsy 1 (ortholog); genetic disease (ortholog); Myoclonic Epilepsies (ortholog) NW_004955417 24137340 24541572 - 102003765 AGCD01018453;AGCD01018454;AGCD01018455;AGCD01018456;AGCD01018457;AGCD01018458;AGCD01018459;AGCD01018460;AGCD01018461;AGCD01018462;AGCD01018463;GBDJ01028414;XM_005381901;XM_005381902;XM_005381903;XM_005381904;XM_013512785;XM_013512787;XM_013512788 XP_005381958;XP_005381959;XP_005381960;XP_005381961;XP_013368239;XP_013368241;XP_013368242 MODEL 8701297 protein-coding LOC102015958 zinc finger protein 208-like NW_004955482 102076 193169 - 102015958 AGCD01057161;AGCD01057162;AGCD01057163;AGCD01057164;AGCD01057165;GBCE01005323;XM_005402935 XP_005402992 MODEL 8808785 protein-coding Slc9d1 solute carrier family 9 member D1 ENCODES a protein that exhibits protein-membrane adaptor activity (ortholog); INVOLVED IN positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN Golgi membrane (ortholog); plasma membrane (ortholog) NW_004955404 427987 463176 - 102003934 AGCD01003201;AGCD01003202;GBCB01089585;XM_005373943;XM_013515517;XM_013515520 XP_005374000;XP_013370971;XP_013370974 MODEL 8829580 trna Trnah-gug transfer RNA histidine(anticodon GUG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955568;NW_004955409;NW_004955434;NW_004955409;NW_004955409 58646;8201309;17523204;8203034;8201874 58717;8201380;17523275;8203105;8201945 -;-;-;+;+ 101978821 AGCD01009385;AGCD01032537;AGCD01074502 MODEL 9009025 protein-coding Rapgef6 Rap guanine nucleotide exchange factor 6 ENCODES a protein that exhibits GTP-dependent protein binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); phosphatidic acid binding (ortholog); INVOLVED IN establishment of endothelial intestinal barrier (ortholog); positive regulation of microvillus assembly (ortholog); FOUND IN apical plasma membrane (ortholog); cytosol (ortholog); endocytic vesicle (ortholog) NW_004955408 2902530 3109273 - 102021314 AGCD01008041;AGCD01008042;AGCD01008043;AGCD01008044;AGCD01008045;AGCD01008046;AGCD01008047;GBCE01055755;XM_005376072 XP_005376129 MODEL 8721309 ncrna LOC102019406 uncharacterized LOC102019406 NW_004955422 17689447 17710741 - 102019406 AGCD01022932;GBDF01207243;XR_001233931;XR_001233932 MODEL 8810267 protein-coding C1qtnf3 C1q and TNF related 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN fat cell differentiation (ortholog); glucose homeostasis (ortholog); intracellular triglyceride homeostasis (ortholog); FOUND IN extracellular region (ortholog); protein-containing complex (ortholog) NW_004955426 19588637 19606557 - 102028440 AGCD01026549;GBCB01010684;XM_005386168;XM_005386169 XP_005386225;XP_005386226 MODEL 8868311 protein-coding Senp1 SUMO specific peptidase 1 ENCODES a protein that exhibits deSUMOylase activity (ortholog); SUMO-specific endopeptidase activity (ortholog); INVOLVED IN negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); protein desumoylation (ortholog); ASSOCIATED WITH arteriosclerosis (ortholog); Neointima (ortholog); Primary Graft Dysfunction (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); nucleoplasm (ortholog) NW_004955500 6924445 6978482 - 102025139 AGCD01063895;GBCE01013150;GBDF01049796;XM_005406636 XP_005406693 MODEL 10364025 protein-coding LOC106147173 arrestin domain-containing protein 2-like NW_004955524 3321325 3322120 - 106147173 AGCD01068881;GBCE01142122;GBDI01227027;XM_013507271 XP_013362725 MODEL 8929055 ncrna LOC102028120 uncharacterized LOC102028120 NW_004955432 14980641 15009123 - 102028120 AGCD01031055;AGCD01031056;AGCD01031057;GBDF01210527;XR_261529 MODEL 8780887 protein-coding Lmod2 leiomodin 2 ENCODES a protein that exhibits actin binding (ortholog); actin monomer binding (ortholog); tropomyosin binding (ortholog); INVOLVED IN actin filament polymerization (ortholog); actin nucleation (ortholog); positive regulation of actin filament polymerization (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); dilated cardiomyopathy 1BB (ortholog); dilated cardiomyopathy 2G (ortholog); FOUND IN actin filament (ortholog); cardiac myofibril (ortholog); M band (ortholog) NW_004955479 5143430 5151096 + 102015197 AGCD01056340;GBCB01034433;XM_005402335 XP_005402392 MODEL 8880017 ncrna LOC102026094 uncharacterized LOC102026094 NW_004955413 6676261 6678841 + 102026094 AGCD01013768;AGCD01013769;GBDF01046613;XR_001233022 MODEL 8906377 pseudo LOC102009792 MAP/microtubule affinity-regulating kinase 3-like NW_004955403 31079581 31081821 + 102009792 AGCD01002411 MODEL 8700843 pseudo LOC102028772 cytoskeleton-associated protein 2 pseudogene NW_004955424 20618151 20619511 - 102028772 AGCD01024867 MODEL 8869054 protein-coding LOC102021907 putative uncharacterized protein C3orf49 NW_004955517 2046893 2064789 - 102021907 AGCD01067615;GBBH01155474;XM_013506936;XM_013506937 XP_013362390;XP_013362391 MODEL 10065713 ncrna LOC106150011 uncharacterized LOC106150011 NW_004955460 8135802 8142315 - 106150011 AGCD01048512;GBDJ01299914;XR_001236532;XR_001236533 MODEL 8821435 protein-coding Ptpn3 protein tyrosine phosphatase non-receptor type 3 ENCODES a protein that exhibits ATPase binding (ortholog); phosphotyrosine residue binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN liver regeneration (ortholog); negative regulation of membrane protein ectodomain proteolysis (ortholog); negative regulation of mitotic cell cycle (ortholog); ASSOCIATED WITH diastolic heart failure (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955419 17560664 17645420 + 102018833 AGCD01020159;GBBH01026019;GBCQ01067663;XM_013513248 XP_013368702 MODEL 8751268 pseudo LOC102019011 40S ribosomal protein S17-like NW_004955403 42388219 42400367 - 102019011 AGCD01002751 MODEL 8983616 ncrna LOC102003935 uncharacterized LOC102003935 NW_004955405 35086 71659 - 102003935 AGCD01004552;GBBH01007880;XR_259346 MODEL 9055027 pseudo LOC102011820 kelch repeat and BTB domain-containing protein 2 pseudogene NW_004955446 5926616 5937581 - 102011820 AGCD01040081 MODEL 8727496 ncrna LOC102010963 uncharacterized LOC102010963 NW_004955450 6116015 6122123 - 102010963 AGCD01042519;GBDF01296262;XR_262533 MODEL 8968040 protein-coding Whr1 winged helix repair factor 1 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); double-stranded RNA binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN positive regulation of Ras protein signal transduction (ortholog); positive regulation of single strand break repair (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955437 485110 492493 + 102006607 AGCD01034137;GBDF01043359;XM_005389405 XP_005389462 MODEL 39133395 snrna U4 U4 spliceosomal RNA 8756687 pseudo LOC102029173 GTPase NRas-like NW_004955414 7554573 7561743 - 102029173 AGCD01014965 MODEL 8970735 ncrna LOC102006799 uncharacterized LOC102006799 NW_004955428 1444762 1465444 - 102006799 AGCD01027611;AGCD01027612;GBDF01016339;XR_001234438;XR_001234439;XR_001234440;XR_261291 MODEL 8782805 gene LOC102010596 T-cell receptor beta-1 chain C region-like NW_004955494 1000095 1115539 - 102010596 AGCD01061390;AGCD01061391;XM_005405393 MODEL 9019408 protein-coding Sox13 SRY-box transcription factor 13 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN gamma-delta T cell differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955406 39959458 39994214 + 102016667 AGCD01006649;AGCD01006650;GBCE01186528;XM_005375280;XM_005375281;XM_013522670 XP_005375337;XP_005375338;XP_013378124 MODEL 8769002 protein-coding Ppp1r3d protein phosphatase 1 regulatory subunit 3D ENCODES a protein that exhibits enzyme binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN regulation of glycogen biosynthetic process (ortholog); regulation of glycogen catabolic process (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; glycogen biosynthetic pathway; glycogen degradation pathway; FOUND IN glycogen granule (ortholog) NW_004955528 3804557 3807309 + 102014282 AGCD01069611;GBBH01225092;XM_013507523 XP_013362977 MODEL 9034410 protein-coding Sgk1 serum/glucocorticoid regulated kinase 1 ENCODES a protein that exhibits 3-phosphoinositide-dependent protein kinase binding (ortholog); protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to aldosterone (ortholog); cellular response to insulin stimulus (ortholog); DNA damage response (ortholog); PARTICIPATES IN glucocorticoid signaling pathway; insulin signaling pathway; mTOR signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN nuclear speck (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955439 2399992 2406587 + 102006075 AGCD01035643;AGCD01035644;GBCE01001862;GBDK01016728;XM_013517384 XP_013372838 MODEL 8728075 protein-coding Rhbdd3 rhomboid domain containing 3 INVOLVED IN liver development (ortholog); MAPK cascade (ortholog); negative regulation of natural killer cell activation (ortholog); ASSOCIATED WITH substance-related disorder (ortholog) NW_004955455 3564867 3570910 - 102003730 AGCD01045636;GBDF01047829;XM_005396194;XM_005396195;XM_005396196 XP_005396251;XP_005396252;XP_005396253 MODEL 8977058 protein-coding Rab33b RAB33B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GTPase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); intra-Golgi vesicle-mediated transport (ortholog); negative regulation of constitutive secretory pathway (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH genetic disease (ortholog); Smith-McCort dysplasia (ortholog); Smith-McCort dysplasia 2 (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi lumen (ortholog); Golgi membrane (ortholog) NW_004955428 4192357 4211740 - 102017898 AGCD01027670;GBDF01144317;XM_005386688 XP_005386745 MODEL 8710039 protein-coding Smyd5 SMYD family member 5 ENCODES a protein that exhibits histone H3K36 trimethyltransferase activity (ortholog); histone H4K20 methyltransferase activity (ortholog); protein-lysine N-methyltransferase activity (ortholog); INVOLVED IN negative regulation of gene expression, epigenetic (ortholog); positive regulation of cytoplasmic translational elongation (ortholog); regulation of stem cell differentiation (ortholog); FOUND IN cytoplasm (ortholog) NW_004955424 12408059 12422424 - 102018619 AGCD01024604;GBCQ01129452;XM_005385571;XM_013514725;XM_013514726 XP_005385628;XP_013370179;XP_013370180 MODEL 8773011 protein-coding LOC102007172 PRAME family member 23-like NW_004955608 264738 312943 - 102007172 AGCD01077020;AGCD01077021;AGCD01077022;AGCD01077023;AGCD01077024;AGCD01077025;AGCD01077026;AGCD01077027;XM_013510118 XP_013365572 MODEL 8880640 ncrna LOC102012964 uncharacterized LOC102012964 NW_004955418 2720066 2727457 + 102012964 AGCD01018774;GBDF01250695;XR_001233484;XR_001233485 MODEL 8787425 protein-coding Pcolce2 procollagen C-endopeptidase enhancer 2 ENCODES a protein that exhibits collagen binding (ortholog); heparin binding (ortholog); peptidase activator activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog) NW_004955508 3058789 3132050 + 102028116 AGCD01065804;AGCD01065805;GBDI01081589;XM_013506286 XP_013361740 MODEL 8725640 pseudo LOC102017874 eukaryotic translation initiation factor 4E type 2 pseudogene NW_004955481 6307199 6311302 - 102017874 AGCD01057023 MODEL 9040249 pseudo LOC102008670 40S ribosomal protein S13 pseudogene NW_004955441 317788 319866 + 102008670 AGCD01036700 MODEL 8921245 protein-coding Slc25a18 solute carrier family 25 member 18 ENCODES a protein that exhibits amino acid:proton symporter activity (ortholog); INVOLVED IN L-glutamate transmembrane transport (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955454 5648255 5668754 + 102003409 AGCD01045179;AGCD01045180;GBDI01215966;XM_005395974;XM_005395975;XM_005395977 XP_005396031;XP_005396032;XP_005396034 MODEL 8868588 pseudo LOC102005705 selenoprotein T pseudogene NW_004955474 8104963 8107680 + 102005705 AGCD01054542 MODEL 9027939 protein-coding LOC102023640 beta-microseminoprotein-like NW_004955556 255059 262466 + 102023640 AGCD01073169;GBDF01116602;XM_005412549 XP_005412606 MODEL 8866111 protein-coding Plpp2 phospholipid phosphatase 2 ENCODES a protein that exhibits ceramide-1-phosphate phosphatase activity (ortholog); phosphatidate phosphatase activity (ortholog); sphingosine-1-phosphate phosphatase activity (ortholog); INVOLVED IN ceramide metabolic process (ortholog); phospholipid dephosphorylation (ortholog); phospholipid metabolic process (ortholog); PARTICIPATES IN D-glycericacidemia pathway; familial lipoprotein lipase deficiency pathway; glycerol kinase deficiency pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN caveola (ortholog); early endosome (ortholog); early endosome membrane (ortholog) NW_004955495 7307079 7310898 + 102027996 AGCD01062130;GBCB01088570;GBDJ01189155;XM_005406052 XP_005406109 MODEL 9053768 pseudo LOC102024626 ATP-binding cassette sub-family D member 3-like NW_004955448 13855290 13858175 + 102024626 AGCD01041607 MODEL 8860081 protein-coding Rchy1 ring finger and CHY zinc finger domain containing 1 ENCODES a protein that exhibits p53 binding (ortholog); protein homodimerization activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); protein autoubiquitination (ortholog); protein ubiquitination (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH Brain Injuries (ortholog); Disease Progression (ortholog); Lung Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955474 1463817 1475677 - 102009275 AGCD01054255;GBCB01021660;GBCE01097442;XM_013502758 XP_013358212 MODEL 8884513 protein-coding Pskh2 protein serine kinase H2 NW_004955417 3750965 3765326 - 102009837 AGCD01017925;XM_013512698 XP_013368152 MODEL 8839473 ncrna LOC102029181 uncharacterized LOC102029181 NW_004955418 22038833 22046769 + 102029181 AGCD01019279;GBDF01156951;XR_260579 MODEL 9036604 trna Trnai-aau transfer RNA isoleucine (anticodon AAU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978794 AGCD01050493;AGCD01050590;AGCD01050591;AGCD01050597;AGCD01051466;AGCD01051471;AGCD01057606;AGCD01077147 MODEL 8834233 protein-coding LOC102030584 polyadenylate-binding protein 1-like 2 NW_004955591 811964 812902 + 102030584 AGCD01076286;XM_005414599 XP_005414656 MODEL 8780507 ncrna LOC102026449 uncharacterized LOC102026449 NW_004955427 12707836 12718068 - 102026449 AGCD01027224;GBDF01265034;XR_261260 MODEL 8935401 protein-coding LOC102019408 olfactory receptor 7G2-like NW_004955495 141820 142770 - 102019408 AGCD01061603;XM_005406113 XP_005406170 MODEL 8830548 protein-coding C1qtnf4 C1q and TNF related 4 INVOLVED IN cell surface receptor signaling pathway via STAT (ortholog); gene expression (ortholog); inflammatory response (ortholog); FOUND IN extracellular region (ortholog) NW_004955422 705165 709261 + 102006787 AGCD01022431;AGCD01022432;GBCE01179740;GBDK01218895;XM_013514050 XP_013369504 MODEL 8969856 pseudo LOC102028121 heterogeneous nuclear ribonucleoprotein A1-like NW_004955432 8555195 8556376 - 102028121 AGCD01030883;XR_261546 MODEL 10315046 protein-coding LOC106148268 basic proline-rich protein-like NW_004955403 24434814 24476966 + 106148268 AGCD01002274;GBBH01064658;XM_013513085 XP_013368539 MODEL 39132883 snorna SNORA73 Small nucleolar RNA SNORA73 family 8877596 protein-coding Rnf112 ring finger protein 112 ENCODES a protein that exhibits GTP binding (ortholog); GTPase activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN embryonic brain development (ortholog); G1 to G0 transition involved in cell differentiation (ortholog); neuron differentiation (ortholog); FOUND IN cell body (ortholog); cytoplasm (ortholog); endosome (ortholog) NW_004955467 349703 355922 - 102028942 AGCD01051218;GBCQ01017224;XM_005399266 XP_005399323 MODEL 8815055 protein-coding Lmod3 leiomodin 3 ENCODES a protein that exhibits actin monomer binding (ortholog); tropomyosin binding (ortholog); INVOLVED IN actin nucleation (ortholog); positive regulation of skeletal muscle fiber development (ortholog); skeletal muscle fiber development (ortholog); ASSOCIATED WITH genetic disease (ortholog); nemaline myopathy 10 (ortholog); FOUND IN A band (ortholog); cytoplasm (ortholog); M band (ortholog) NW_004955421 18728993 18744326 + 102011670 AGCD01022052;AGCD01022053;GBCB01006122;XM_005383807;XM_005383808 XP_005383864;XP_005383865 MODEL 10335659 ncrna LOC106150012 uncharacterized LOC106150012 NW_004955402 9171471 9172006 - 106150012 AGCD01000207;GBCE01046074;XR_001236539 MODEL 8825130 protein-coding Epdr1 ependymin related 1 ENCODES a protein that exhibits ganglioside GM1 binding (ortholog); identical protein binding (ortholog); phospholipid binding (ortholog); INVOLVED IN myofibroblast contraction (ortholog); ASSOCIATED WITH angle-closure glaucoma (ortholog); FOUND IN extracellular region (ortholog); lysosomal lumen (ortholog); lysosome (ortholog) NW_004955460 5612589 5650222 - 102025881 AGCD01048455;AGCD01048456;GBDJ01134723;XM_005397745;XM_005397746 XP_005397802;XP_005397803 MODEL 9019262 ncrna LOC102003942 uncharacterized LOC102003942 NW_004955406 42823741 42853661 + 102003942 AGCD01006719;GBDI01207600;XR_259536;XR_259537 MODEL 8813111 protein-coding Rab34 RAB34, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GTP-dependent protein binding (ortholog); GTPase activity (ortholog); INVOLVED IN antigen processing and presentation (ortholog); cellular response to glucose stimulus (ortholog); cilium assembly (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); orofaciodigital syndrome XX (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); cytoplasmic vesicle (ortholog) NW_004955481 4441290 4445969 + 102023152 AGCD01056939;GBDF01044851;XM_005402720;XM_005402721 XP_005402777;XP_005402778 MODEL 9021221 protein-coding LOC102011821 putative olfactory receptor 2B8 NW_004955576 1362244 1363185 + 102011821 AGCD01075374;XM_005413954 XP_005414011 MODEL 8873695 ncrna LOC102010965 uncharacterized LOC102010965 NW_004955403 1991898 2019275 + 102010965 AGCD01001728;GBDF01163403;XR_001233151;XR_259135 MODEL 8763848 protein-coding LOC102015959 N-acetyllactosaminide alpha-1,3-galactosyltransferase-like 1 NW_004955419 6564839 6604214 + 102015959 AGCD01019859;AGCD01019860;XM_005382563;XM_005382565 XP_005382620;XP_005382622 MODEL 8846217 protein-coding Samd13 sterile alpha motif domain containing 13 NW_004955423 9531538 9574312 - 102003979 AGCD01023662;GBDF01083942;XM_005385162;XM_005385163;XM_005385164;XM_013514573;XM_013514574 XP_005385219;XP_005385220;XP_005385221;XP_013370027;XP_013370028 MODEL 39133396 snrna U4 U4 spliceosomal RNA 8834882 protein-coding Ptpn4 protein tyrosine phosphatase non-receptor type 4 ENCODES a protein that exhibits glutamate receptor binding (ortholog); non-membrane spanning protein tyrosine phosphatase activity (ortholog); INVOLVED IN peptidyl-tyrosine phosphorylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); membrane (ortholog) NW_004955459 9803421 9981392 - 102020217 AGCD01048171;AGCD01048172;AGCD01048173;AGCD01048174;AGCD01048175;AGCD01048176;AGCD01048177;GBDI01108232;XM_005397664;XM_013521057;XM_013521058;XM_013521059 XP_005397721;XP_013376511;XP_013376512;XP_013376513 MODEL 10271969 ncrna LOC106147174 uncharacterized LOC106147174 NW_004955524 2359078 2365515 - 106147174 AGCD01068810;AGCD01068811;GBDF01277515;XR_001231952 MODEL 8905081 pseudo LOC102010598 60S ribosomal protein L7-like 1 pseudogene NW_004955494 4924654 4934243 - 102010598 AGCD01061515 MODEL 8819795 protein-coding Rapgefl1 Rap guanine nucleotide exchange factor like 1 ASSOCIATED WITH familial cold autoinflammatory syndrome 2 (ortholog); prostate cancer (ortholog) NW_004955451 14802094 14818096 + 102021076 AGCD01043573;AGCD01043574;AGCD01043575;GBDJ01262942;XM_013519122 XP_013374576 MODEL 8880586 protein-coding Senp2 SUMO specific peptidase 2 ENCODES a protein that exhibits deSUMOylase activity (ortholog); protein domain specific binding (ortholog); SUMO-specific endopeptidase activity (ortholog); INVOLVED IN dorsal/ventral axis specification (ortholog); fat cell differentiation (ortholog); heart development (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Experimental Liver Cirrhosis (ortholog); visual epilepsy (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955420 21969537 22005094 - 102010373 AGCD01021176;AGCD01021177;GBBH01117914;GBDF01051391;XM_005383292 XP_005383349 MODEL 9019151 ncrna LOC102027445 uncharacterized LOC102027445 NW_004955433 5288555 5296541 + 102027445 AGCD01031498;GBDF01279564;XR_261557;XR_261558 MODEL 8769455 pseudo LOC102028774 interferon regulatory factor 8 pseudogene NW_004955505 3769289 3785419 + 102028774 AGCD01065056;AGCD01065057 MODEL 9008066 ncrna LOC102021908 uncharacterized LOC102021908 NW_004955433 9978528 10091601 - 102021908 AGCD01031621;AGCD01031622;AGCD01031623;AGCD01031624;GBDF01128236;XR_001234701;XR_261583 MODEL 8837795 protein-coding Tlcd3b TLC domain containing 3B ENCODES a protein that exhibits sphingosine N-acyltransferase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); negative regulation of fat cell differentiation (ortholog); ASSOCIATED WITH cone-rod dystrophy 22 (ortholog); spondylocostal dysostosis 5 (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955493 6929477 6940109 + 102024921 AGCD01061148;AGCD01061149;GBDF01049970;XM_005405196;XM_005405197;XM_005405198;XM_005405199 XP_005405253;XP_005405254;XP_005405255;XP_005405256 MODEL 8968765 protein-coding Rhbdf1 rhomboid 5 homolog 1 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); INVOLVED IN cell migration (ortholog); cell population proliferation (ortholog); chaperone-mediated protein complex assembly (ortholog); ASSOCIATED WITH Wolff-Parkinson-White syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog) NW_004955442 17090962 17098068 + 102009327 AGCD01037937;GBDJ01079685;GBDJ01079692;XM_005391681 XP_005391738 MODEL 8917967 protein-coding Snai1 snail family transcriptional repressor 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); E-box binding (ortholog); kinase binding (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); cartilage morphogenesis (ortholog); cell migration (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Breast Neoplasms (ortholog); cholestasis (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955445 8232084 8237893 - 102030677 AGCD01039568;GBCQ01013485;XM_005392323 XP_005392380 MODEL 9000533 protein-coding Trappc1 trafficking protein particle complex subunit 1 FOUND IN TRAPP complex (ortholog) NW_004955467 9010936 9012796 + 102026844 AGCD01051481;GBDF01046835;XM_005399442 XP_005399499 MODEL 8752979 protein-coding LOC102012965 uncharacterized LOC102012965 NW_004955481 9182564 9207329 + 102012965 AGCD01057096;AGCD01057097;GBDF01015936;XM_005402931 XP_005402988 MODEL 8913722 protein-coding LOC102028779 olfactory receptor 5AK2-like NW_004955511 2166562 2167491 + 102028779 AGCD01066394;XM_005408252 XP_005408309 MODEL 8962639 protein-coding Whrn whirlin ENCODES a protein that exhibits identical protein binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); cerebellar Purkinje cell layer formation (ortholog); detection of mechanical stimulus involved in sensory perception of sound (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Aland Island eye disease (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 31 (ortholog); FOUND IN actin filament (ortholog); apical dendrite (ortholog); axon collateral (ortholog) NW_004955419 13116001 13207266 + 102010486 AGCD01019996;AGCD01019997;GBDK01284958;XM_005382629;XM_005382630;XM_005382631;XM_005382633;XM_013513190;XM_013513191 XP_005382686;XP_005382687;XP_005382688;XP_005382690;XP_013368644;XP_013368645 MODEL 9061091 protein-coding LOC102023641 mimitin, mitochondrial NW_004955443 7676051 7676896 + 102023641 AGCD01038293;XM_005391974 XP_005392031 MODEL 8990146 protein-coding Slco1a2 solute carrier organic anion transporter family member 1A2 ENCODES a protein that exhibits transmembrane transporter activity (ortholog); INVOLVED IN cellular response to xenobiotic stimulus (ortholog); response to estrogen (ortholog); sodium-independent organic anion transport (ortholog); ASSOCIATED WITH cholestasis (ortholog); Dubin-Johnson syndrome (ortholog); steatotic liver disease (ortholog); FOUND IN basal plasma membrane (ortholog); plasma membrane (ortholog) NW_004955413 16821808 16910511 + 102015094 AGCD01014115;AGCD01014116;AGCD01014117;GBDF01277792;XM_005379051;XM_005379052;XM_005379053 XP_005379108;XP_005379109;XP_005379110 MODEL 9061351 pseudo LOC102006803 aldo-keto reductase family 1 member C23-like protein NW_004955429 94455 445853 + 102006803 AGCD01028306;AGCD01028307;AGCD01028308;AGCD01028309;AGCD01028310;AGCD01028311;AGCD01028312;AGCD01028313;AGCD01028314;AGCD01028315;AGCD01028316;AGCD01028317;AGCD01028318;AGCD01028319;AGCD01028320;AGCD01028321;AGCD01028322;AGCD01028323;AGCD01028324;AGCD01028325;AGCD01028326;AGCD01028327;AGCD01028328;AGCD01028329;AGCD01028330;AGCD01028331;AGCD01028332;AGCD01028333;AGCD01028334;AGCD01028335;AGCD01028336;AGCD01028337;AGCD01028338;AGCD01028339;AGCD01028340;AGCD01028341;AGCD01028342;AGCD01028343;AGCD01028344;AGCD01028345;AGCD01028346;AGCD01028347;AGCD01028348;AGCD01028349;AGCD01028350;XM_005387227 MODEL 8828799 pseudo LOC102011339 actin filament-associated protein 1-like 2 pseudogene NW_004955503 4487948 4488394 + 102011339 AGCD01064669 MODEL 8832570 protein-coding Plpp3 phospholipid phosphatase 3 ENCODES a protein that exhibits ceramide-1-phosphate phosphatase activity (ortholog); delta-catenin binding (ortholog); integrin binding (ortholog); INVOLVED IN Bergmann glial cell differentiation (ortholog); blood vessel development (ortholog); cell adhesion (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); coronary artery disease (ortholog); left ventricular failure (ortholog); FOUND IN adherens junction (ortholog); basolateral plasma membrane (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955464 3122420 3197359 + 102021743 AGCD01049971;AGCD01049972;GBDJ01134336;XM_013521597;XM_013521598 XP_013377051;XP_013377052 MODEL 8740679 protein-coding Per1 period circadian regulator 1 ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA-binding transcription factor binding (ortholog); E-box binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); alcohol withdrawal syndrome (ortholog); antidepressant type abuse (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955467 8798436 8813369 + 102023995 AGCD01051472;GBDF01050299;XM_005399432;XM_005399433 XP_005399489;XP_005399490 MODEL 8707092 trna Trnai-gau transfer RNA isoleucine (anticodon GAU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955500 8293826 8293897 + 101978795 AGCD01063986 MODEL 8721533 protein-coding LOC102029185 uncharacterized LOC102029185 NW_004955487 5622794 5639560 - 102029185 AGCD01059343;GBBH01053577;XM_005404411;XM_013504363;XM_013504364;XM_013504365;XM_013504366;XR_001231158 XP_005404468;XP_013359817;XP_013359818;XP_013359819;XP_013359820 MODEL 8753680 protein-coding Ppp1r3e protein phosphatase 1 regulatory subunit 3E ENCODES a protein that exhibits [phosphorylase] phosphatase activity (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN positive regulation of glycogen biosynthetic process (ortholog); regulation of glycogen biosynthetic process (ortholog); regulation of glycogen catabolic process (ortholog); PARTICIPATES IN glycogen biosynthetic pathway; glycogen degradation pathway; FOUND IN glycogen granule (ortholog) NW_004955409 37016851 37025125 + 102022055 AGCD01010488;AGCD01010489;GBDF01113415;XM_013510438;XM_013510439 XP_013365892;XP_013365893 MODEL 8983585 protein-coding LOC102030590 leucine-rich repeat-containing protein 37A3-like NW_004955451 16695755 16756227 + 102030590 AGCD01043698;AGCD01043699;AGCD01043700;AGCD01043701;AGCD01043702;AGCD01043703;GBDF01121394;GBDJ01300313;XM_013519242 XP_013374696 MODEL 8715714 pseudo LOC102019411 probable global transcription activator SNF2L2 NW_004955500 1745320 1748206 + 102019411 AGCD01063681 MODEL 8739650 ncrna LOC102019012 uncharacterized LOC102019012 NW_004955403 46753348 46754897 + 102019012 AGCD01002867;GBDF01016883;XR_259245 MODEL 8995558 protein-coding C1qtnf5 C1q and TNF related 5 ENCODES a protein that exhibits identical protein binding (ortholog); signaling receptor inhibitor activity (ortholog); INVOLVED IN inner ear development (ortholog); protein secretion (ortholog); ASSOCIATED WITH isolated microphthalmia 5 (ortholog); late-onset retinal degeneration (ortholog); lens disease (ortholog); FOUND IN apical plasma membrane (ortholog); bicellular tight junction (ortholog); extracellular region (ortholog) NW_004955412 20419754 20421541 - 102006558 AGCD01013008;GBDI01171673;XM_005378334 XP_005378391 MODEL 8702712 protein-coding Per2 period circadian regulator 2 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); histone deacetylase binding (ortholog); histone methyltransferase binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH advanced sleep phase syndrome (ortholog); advanced sleep phase syndrome 1 (ortholog); alcohol dependence (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955542 2331547 2369011 + 102025287 AGCD01071518;AGCD01071519;GBBH01061747;GBDI01080968;XM_005411189 XP_005411246 MODEL 8803409 protein-coding Prlhr prolactin releasing hormone receptor ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); peptide hormone binding (ortholog); INVOLVED IN adult feeding behavior (ortholog); feeding behavior (ortholog); G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN obesity pathway; ASSOCIATED WITH hypertension (ortholog); obesity (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); cilium (ortholog) NW_004955431 23192018 23193130 - 102004506 AGCD01030532;XM_005387879 XP_005387936 MODEL 8761234 protein-coding Rnf113a ring finger protein 113A ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); negative regulation of chemokine-mediated signaling pathway (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH neurodevelopmental disorder with microcephaly, arthrogryposis, and structural brain anomalies (ortholog); nonphotosensitive trichothiodystrophy 5 (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955534 154242 155474 + 102007275 AGCD01070441;GBDK01355850;XM_005410428 XP_005410485 MODEL 8725008 protein-coding Slc25a19 solute carrier family 25 member 19 ENCODES a protein that exhibits deoxynucleotide transmembrane transporter activity (ortholog); thiamine pyrophosphate transmembrane transporter activity (ortholog); INVOLVED IN deoxynucleotide transport (ortholog); thiamine diphosphate biosynthetic process (ortholog); thiamine pyrophosphate transmembrane transport (ortholog); ASSOCIATED WITH Amish Lethal Microcephaly (ortholog); genetic disease (ortholog); microcephaly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955553 2134715 2160777 - 102025729 AGCD01072924;AGCD01072925;AGCD01072926;AGCD01072927;AGCD01072928;AGCD01072929;GBBH01228703;XM_005412291;XM_005412292;XM_013508653 XP_005412348;XP_005412349;XP_013364107 MODEL 8736082 protein-coding Rcl1 RNA terminal phosphate cyclase like 1 INVOLVED IN endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); psychotic disorder (ortholog); FOUND IN nucleolus (ortholog); small-subunit processome (ortholog) NW_004955434 9073643 9137387 + 102028569 AGCD01032288;AGCD01032289;AGCD01032290;AGCD01032291;GBBH01052005;XM_005388652 XP_005388709 MODEL 8870678 protein-coding Psma1 proteasome 20S subunit alpha 1 ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); structural constituent of proteasome (ortholog); INVOLVED IN negative regulation of inflammatory response to antigenic stimulus (ortholog); proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955414 29667417 29679510 - 102023463 AGCD01015711;GBCB01002979;XM_005380332 XP_005380389 MODEL 9030587 protein-coding Rab35 RAB35, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); cellular response to nerve growth factor stimulus (ortholog); endosomal transport (ortholog); FOUND IN cell projection membrane (ortholog); clathrin-coated endocytic vesicle (ortholog); clathrin-coated pit (ortholog) NW_004955455 11484557 11502630 + 102014978 AGCD01046006;AGCD01046007;GBDF01246895;XM_005396519 XP_005396576 MODEL 10189778 protein-coding LOC106147176 basic proline-rich protein-like NW_004955408 770878 771309 + 106147176 AGCD01007931;GBDI01163505;GBDI01376377;XM_013507281 XP_013362735 MODEL 8890263 ncrna LOC102026453 uncharacterized LOC102026453 NW_004955430 8281059 8309931 + 102026453 AGCD01029384;AGCD01029385;GBDI01165834;XR_001234553;XR_261423 MODEL 8765714 pseudo LOC102010601 28S ribosomal protein S36, mitochondrial pseudogene NW_004955497 1775669 1783185 - 102010601 AGCD01062473 MODEL 8996849 protein-coding Sgk2 serum/glucocorticoid regulated kinase 2 ENCODES a protein that exhibits potassium channel regulator activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN intracellular signal transduction (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955445 13581145 13625320 - 102026270 AGCD01039794;AGCD01039795;AGCD01039796;AGCD01039797;AGCD01039798;AGCD01039799;GBCQ01033867;XM_005392499;XM_013518253;XR_001235575 XP_005392556;XP_013373707 MODEL 8850441 pseudo LOC102028122 calcineurin B homologous protein 1 pseudogene NW_004955519 624885 625475 + 102028122 AGCD01067879 MODEL 8744411 pseudo LOC102017875 high mobility group protein B1 pseudogene NW_004955418 4498538 4499208 + 102017875 AGCD01018825 MODEL 39132835 snorna SNORA73 Small nucleolar RNA SNORA73 family 8857332 protein-coding Pcp2 Purkinje cell protein 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN G protein-coupled opsin signaling pathway (ortholog) NW_004955563 1625249 1628776 + 102030011 AGCD01074153;XM_005413179;XM_013509164 XP_005413236;XP_013364618 MODEL 8780747 protein-coding LOC102008677 deoxynucleotidyltransferase terminal-interacting protein 2-like NW_004955572 1393253 1395378 - 102008677 AGCD01074950;XM_013509439 XP_013364893 MODEL 8827094 pseudo LOC102030591 pre-mRNA-splicing regulator WTAP-like NW_004955404 48128448 48235144 + 102030591 AGCD01004495;AGCD01004496;AGCD01004497;AGCD01004498;AGCD01004499;AGCD01004500 MODEL 8739337 ncrna LOC102005707 uncharacterized LOC102005707 NW_004955478 5365809 5429517 + 102005707 AGCD01055871;AGCD01055872;GBDF01254563;XR_001230866;XR_263698 MODEL 8997684 ncrna LOC102024629 uncharacterized LOC102024629 NW_004955450 2617199 2624097 + 102024629 AGCD01042389;AGCD01042390;AGCD01042391;GBDF01074668;XR_001235839 MODEL 8994573 ncrna LOC102026096 uncharacterized LOC102026096 NW_004955413 27267143 27271663 - 102026096 AGCD01014500;GBDF01083501;XR_001232991 MODEL 8927590 protein-coding Sox14 SRY-box transcription factor 14 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN entrainment of circadian clock (ortholog); regulation of neuron migration (ortholog); visual perception (ortholog); ASSOCIATED WITH syndromic microphthalmia 5 (ortholog); FOUND IN transcription regulator complex (ortholog) NW_004955501 1155920 1157870 - 102016077 AGCD01064045;XM_005406773 XP_005406830 MODEL 8989694 protein-coding Snai2 snail family transcriptional repressor 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN cartilage morphogenesis (ortholog); cell migration (ortholog); cell migration involved in endocardial cushion formation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); calcinosis (ortholog); Esophageal Neoplasms (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955454 8759860 8763603 - 102025653 AGCD01045326;GBDJ01234105;XM_005396046 XP_005396103 MODEL 39133399 snrna U4 U4 spliceosomal RNA 8880687 protein-coding LOC102015961 zinc finger protein 709-like NW_004955420 30097025 30113249 + 102015961 AGCD01021533;AGCD01021534;GBDI01091409;XM_005383585;XM_013513538 XP_005383642;XP_013368992 MODEL 9022016 ncrna LOC102011824 uncharacterized LOC102011824 NW_004955402 7083653 7093047 - 102011824 AGCD01000165;GBDF01118415;XR_259035 MODEL 8887502 ncrna LOC102023647 uncharacterized LOC102023647 NW_004955402 2582240 2583206 - 102023647 AGCD01000084;GBDI01337991;XR_259016 MODEL 8962566 protein-coding LOC102007173 translation initiation factor IF-2-like NW_004955451 5638379 5640035 + 102007173 AGCD01043171;GBDF01005683;XM_013519255 XP_013374709 MODEL 8875140 pseudo LOC102027451 olfactory receptor 6B1-like NW_004955435 14360959 14361878 + 102027451 AGCD01033229 MODEL 8920823 protein-coding Rnf115 ring finger protein 115 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN negative regulation of epidermal growth factor receptor signaling pathway (ortholog); negative regulation of toll-like receptor signaling pathway (ortholog); protein autoubiquitination (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955568 263302 349192 + 102007603 AGCD01074509;AGCD01074510;AGCD01074511;AGCD01074512;AGCD01074513;GBCE01023712;XM_005413441;XM_005413442 XP_005413498;XP_005413499 MODEL 8712782 protein-coding Senp5 SUMO specific peptidase 5 ENCODES a protein that exhibits SUMO-specific endopeptidase activity (ortholog); FOUND IN postsynaptic cytosol (ortholog); presynaptic cytosol (ortholog) NW_004955420 12943783 12975239 + 102016274 AGCD01020907;AGCD01020908;GBBH01137461;XM_005383146;XM_005383147;XM_005383149;XM_005383150 XP_005383203;XP_005383204;XP_005383206;XP_005383207 MODEL 10193883 ncrna LOC106148270 uncharacterized LOC106148270 NW_004955419 26348315 26368453 - 106148270 AGCD01020408;XR_001233559 MODEL 8851048 protein-coding LOC102021909 TIP41-like protein NW_004955433 23172811 23173440 + 102021909 AGCD01031954;XM_013516111 XP_013371565 MODEL 8929315 protein-coding Ppp1r3f protein phosphatase 1 regulatory subunit 3F ENCODES a protein that exhibits glycogen binding (ortholog); protein phosphatase binding (ortholog); INVOLVED IN regulation of glycogen (starch) synthase activity (ortholog); regulation of glycogen biosynthetic process (ortholog); FOUND IN membrane (ortholog) NW_004955543 750094 767894 + 102011247 AGCD01071600;GBCB01002712;XM_005411333;XM_005411334 XP_005411390;XP_005411391 MODEL 8800238 pseudo LOC102003943 forkhead box protein M1 pseudogene NW_004955406 36927530 36938489 + 102003943 AGCD01006570 MODEL 8770545 protein-coding Tlcd4 TLC domain containing 4 NW_004955435 278795 351707 + 102020947 AGCD01032720;AGCD01032721;AGCD01032722;GBCQ01033522;XM_013516468;XM_013516469;XM_013516470;XM_013516471;XM_013516472;XM_013516473;XM_013516474;XM_013516475;XM_013516476 XP_013371922;XP_013371923;XP_013371924;XP_013371925;XP_013371926;XP_013371927;XP_013371928;XP_013371929;XP_013371930 MODEL 8829320 protein-coding Epg5 ectopic P-granules 5 autophagy tethering factor INVOLVED IN anatomical structure homeostasis (ortholog); apoptotic process (ortholog); autophagosome maturation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); cardiomyopathy (ortholog); Developmental Disabilities (ortholog); FOUND IN lysosome (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955402 31422848 31532189 - 102025742 AGCD01000788;AGCD01000789;AGCD01000790;GBDF01280540;XM_005372862;XM_013510404 XP_005372919;XP_013365858 MODEL 8929704 protein-coding Rhbdf2 rhomboid 5 homolog 2 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); INVOLVED IN gene expression (ortholog); hair cell differentiation (ortholog); hair follicle cell proliferation (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatoblastoma (ortholog); palmoplantar keratoderma-esophageal carcinoma syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955506 5805415 5828286 + 102023826 AGCD01065390;GBDK01396584;XM_005407428 XP_005407485 MODEL 8728259 protein-coding LOC102009793 uncharacterized LOC102009793 NW_004955451 10468343 10479347 + 102009793 AGCD01043324;XM_013519062 XP_013374516 MODEL 9007053 protein-coding LOC102010966 uncharacterized LOC102010966 NW_004955450 12785559 12807014 + 102010966 AGCD01042708;AGCD01042709;GBDJ01327161;XM_013518835 XP_013374289 MODEL 39131539 protein-coding C1QTNF6 C1q and TNF related 6 8786841 pseudo LOC102028785 calmodulin-like NW_004955432 11500456 11500892 + 102028785 AGCD01030949 MODEL 8747659 protein-coding LOC102012966 olfactory receptor 13G1 NW_004955418 30326157 30327080 - 102012966 AGCD01019513;XM_005382372 XP_005382429 MODEL 8724324 protein-coding Ptpn5 protein tyrosine phosphatase non-receptor type 5 ENCODES a protein that exhibits identical protein binding (ortholog); phosphotyrosine residue binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN exploration behavior (ortholog); negative regulation of MAP kinase activity (ortholog); peptidyl-tyrosine dephosphorylation (ortholog); PARTICIPATES IN dopamine signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Brain Hypoxia-Ischemia (ortholog); Nerve Degeneration (ortholog); FOUND IN axon (ortholog); neuronal cell body (ortholog); perikaryon (ortholog) NW_004955414 33381783 33436974 - 102025349 AGCD01015805;AGCD01015806;GBDF01076364;XM_005380426;XM_013512076 XP_005380483;XP_013367530 MODEL 8763015 protein-coding Samd14 sterile alpha motif domain containing 14 ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog) NW_004955451 11536639 11547402 + 102016012 AGCD01043358;AGCD01043359;GBDF01240504;GBDJ01056730;XM_013519104 XP_013374558 MODEL 9029822 protein-coding Wif1 WNT inhibitory factor 1 INVOLVED IN positive regulation of fat cell differentiation (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH breast cancer (ortholog); Colorectal Neoplasms (ortholog); Endometrioid Carcinomas (ortholog) NW_004955458 11755147 11834047 - 102009152 AGCD01047759;AGCD01047760;GBBH01163275;GBCE01002151;XM_013521009 XP_013376463 MODEL 8777557 pseudo LOC102006807 oligosaccharyltransferase complex subunit OSTC pseudogene NW_004955512 4327196 4330962 + 102006807 AGCD01066741 MODEL 8704975 protein-coding Raph1 Ras association (RalGDS/AF-6) and pleckstrin homology domains 1 INVOLVED IN axon extension (ortholog); ASSOCIATED WITH COVID-19 (ortholog); major depressive disorder (ortholog); prostate cancer (ortholog); FOUND IN cell leading edge (ortholog); plasma membrane (ortholog) NW_004955457 11394572 11462617 + 102030500 AGCD01046968;AGCD01046969;AGCD01046970;GBDF01154438;XM_013520695;XM_013520696;XM_013520697;XM_013520698;XM_013520699;XM_013520700 XP_013376149;XP_013376150;XP_013376151;XP_013376152;XP_013376153;XP_013376154 MODEL 9055703 protein-coding Psma2 proteasome 20S subunit alpha 2 ENCODES a protein that exhibits structural constituent of proteasome (ortholog); INVOLVED IN proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH heart disease (ortholog); osteoporosis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); P-body (ortholog) NW_004955460 880795 890718 + 102012836 AGCD01048350;GBDI01008253;XM_005397715 XP_005397772 MODEL 9004737 protein-coding Slco1c1 solute carrier organic anion transporter family member 1C1 ENCODES a protein that exhibits bile acid transmembrane transporter activity (ortholog); thyroid hormone transmembrane transporter activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN bile acid and bile salt transport (ortholog); positive regulation of thyroid hormone generation (ortholog); thyroid hormone transport (ortholog); PARTICIPATES IN multispecific organic anion transporter mediated transport pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); primary biliary cholangitis (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955413 16654655 16705638 + 102013812 AGCD01014108;AGCD01014109;XM_005379046;XM_005379049 XP_005379103;XP_005379106 MODEL 8796731 protein-coding Rcn1 reticulocalbin 1 INVOLVED IN camera-type eye development (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955476 10280669 10289668 + 102009714 AGCD01055419;GBCQ01007481;GBDK01131007;XM_005401900 XP_005401957 MODEL 8901726 protein-coding Slc25a20 solute carrier family 25 member 20 ENCODES a protein that exhibits carnitine:O-acyl-L-carnitine antiporter activity (ortholog); O-acyl-L-carnitine transmembrane transporter activity (ortholog); INVOLVED IN carnitine shuttle (ortholog); carnitine transmembrane transport (ortholog); in utero embryonic development (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); carnitine-acylcarnitine translocase deficiency (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955532 902937 933675 - 102004750 AGCD01070158;AGCD01070159;GBDJ01176959;XM_005410172;XM_005410173 XP_005410229;XP_005410230 MODEL 8796638 protein-coding LOC102029190 uncharacterized LOC102029190 NW_004955491 5056498 5154945 + 102029190 AGCD01060469;AGCD01060470;AGCD01060471;AGCD01060472;GBCE01059324;XM_013504565 XP_013360019 MODEL 8723520 protein-coding Plpp4 phospholipid phosphatase 4 ENCODES a protein that exhibits diacylglycerol diphosphate phosphatase activity (ortholog); identical protein binding (ortholog); phosphatidate phosphatase activity (ortholog); INVOLVED IN blastocyst hatching (ortholog); phospholipid dephosphorylation (ortholog); regulation of calcium ion import (ortholog); ASSOCIATED WITH breast cancer (ortholog) NW_004955551 1328652 1458714 + 102015056 AGCD01072692;AGCD01072693;AGCD01072694;GBDJ01262036;XM_005412174 XP_005412231 MODEL 8735224 ncrna LOC102019414 uncharacterized LOC102019414 NW_004955504 6797808 6800456 + 102019414 AGCD01064930;GBDJ01316295;XR_264297 MODEL 9014054 pseudo LOC102019018 calcyclin-binding protein pseudogene NW_004955405 8575773 8576688 - 102019018 AGCD01004749 MODEL 8845469 pseudo LOC102010608 RWD domain-containing protein 1 pseudogene NW_004955429 4973092 4973820 - 102010608 AGCD01028499 MODEL 8855807 pseudo LOC102028126 ribosome maturation protein SBDS-like NW_004955435 14869613 14884498 + 102028126 AGCD01033256 MODEL 9050479 ncrna LOC102011343 uncharacterized LOC102011343 NW_004955507 2011410 2055347 - 102011343 AGCD01065577;AGCD01065578;GBDK01390619;XR_001231618;XR_264370 MODEL 8804791 protein-coding Per3 period circadian regulator 3 ENCODES a protein that exhibits kinase binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN circadian rhythm (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); protein stabilization (ortholog); ASSOCIATED WITH advanced sleep phase syndrome (ortholog); advanced sleep phase syndrome 1 (ortholog); advanced sleep phase syndrome 3 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955486 5058602 5101480 - 102004823 AGCD01059074;AGCD01059075;GBDI01066498;XM_005404069;XM_005404070;XM_013504262;XM_013504263;XM_013504264 XP_005404126;XP_005404127;XP_013359716;XP_013359717;XP_013359718 MODEL 8923870 protein-coding Prlr prolactin receptor ENCODES a protein that exhibits lipid binding (ortholog); peptide hormone binding (ortholog); prolactin receptor activity (ortholog); INVOLVED IN activation of Janus kinase activity (ortholog); activation of transmembrane receptor protein tyrosine kinase activity (ortholog); cell surface receptor signaling pathway via JAK-STAT (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); autistic disorder (ortholog); carcinoma (ortholog); FOUND IN cell surface (ortholog) NW_004955426 20161406 20326688 - 102007036 AGCD01026564;AGCD01026565;AGCD01026566;GBDI01208671;XM_005386193;XM_005386194;XM_005386195;XM_013515018 XP_005386250;XP_005386251;XP_005386252;XP_013370472 MODEL 9053486 protein-coding LOC102012969 uncharacterized LOC102012969 NW_004955486 114376 172776 - 102012969 AGCD01058804;AGCD01058805;AGCD01058806;AGCD01058807;AGCD01058808;AGCD01058809;AGCD01058810;AGCD01058811;AGCD01058812;AGCD01058813;AGCD01058814;AGCD01058815;AGCD01058816;GBDF01153096;XM_013504134 XP_013359588 MODEL 8723720 protein-coding LOC102026454 olfactory receptor 1009-like NW_004955511 1886579 1887529 - 102026454 AGCD01066382;XM_005408247 XP_005408304 MODEL 8874101 protein-coding Lmtk2 lemur tyrosine kinase 2 ENCODES a protein that exhibits myosin VI binding (ortholog); protein phosphatase inhibitor activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN early endosome to late endosome transport (ortholog); endocytic recycling (ortholog); peptidyl-serine phosphorylation (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN early endosome (ortholog); Golgi apparatus (ortholog); growth cone (ortholog) NW_004955460 14012047 14101969 + 102026951 AGCD01048736;AGCD01048737;AGCD01048738;GBDF01089102;XM_005397908;XM_005397909 XP_005397965;XP_005397966 MODEL 8993315 protein-coding LOC102007174 cocaine esterase-like NW_004955767 9802 20242 - 102007174 AGCD01078309;AGCD01078310;GBDJ01038301;XM_005415102 XP_005415159 MODEL 8858150 protein-coding Rab36 RAB36, member RAS oncogene family NW_004955455 7574376 7590024 + 102023775 AGCD01045861;GBDI01171154;XM_005396362;XM_005396363;XM_005396364;XM_013520319;XR_262841 XP_005396419;XP_005396420;XP_005396421;XP_013375773 MODEL 8770379 protein-coding Sgk3 serum/glucocorticoid regulated kinase family member 3 ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN intracellular signal transduction (ortholog); negative regulation of extrinsic apoptotic signaling pathway in absence of ligand (ortholog); ASSOCIATED WITH hypotrichosis (ortholog); prostate cancer (ortholog); FOUND IN cytoplasmic vesicle (ortholog) NW_004955444 12385747 12501589 - 102013659 AGCD01039071;AGCD01039072;AGCD01039073;AGCD01039074;GBCQ01126883;XM_005392140;XM_005392141;XM_005392143;XM_013518177;XM_013518178 XP_005392197;XP_005392198;XP_005392200;XP_013373631;XP_013373632 MODEL 8827214 protein-coding LOC102011826 60S ribosomal protein L17 NW_004955402 34568222 34571290 - 102011826 AGCD01000865;GBDF01002140;XM_013510590 XP_013366044 MODEL 8811757 protein-coding LOC102027459 uncharacterized LOC102027459 NW_004955439 15580339 15675657 + 102027459 AGCD01036004;AGCD01036005;AGCD01036006;GBCB01071924;XM_005390658;XM_005390659;XM_005390660;XM_005390661;XM_005390662;XM_005390663;XM_005390664;XM_005390666 XP_005390715;XP_005390716;XP_005390717;XP_005390718;XP_005390719;XP_005390720;XP_005390721;XP_005390723 MODEL 8705649 protein-coding Trappc10 trafficking protein particle complex subunit 10 INVOLVED IN intra-Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH agnathia-otocephaly complex (ortholog); Arsenic Poisoning (ortholog); intellectual disability (ortholog); FOUND IN TRAPP complex (ortholog) NW_004955407 41271526 41347850 - 102029827 AGCD01007863;AGCD01007864;GBCQ01072221;GBDF01089628;XM_005375874 XP_005375931 MODEL 39132831 snorna SNORA73 Small nucleolar RNA SNORA73 family 9062199 ncrna LOC102008678 uncharacterized LOC102008678 NW_004955449 1311463 1320185 + 102008678 AGCD01041795;AGCD01041796;GBCB01051011;XR_001235820;XR_001235821;XR_262484 MODEL 8894456 protein-coding Rnf121 ring finger protein 121 NW_004955414 19332670 19423711 - 102006018 AGCD01015312;AGCD01015313;AGCD01015314;AGCD01015315;GBDI01220170;XM_005380019 XP_005380076 MODEL 8705385 protein-coding LOC102021910 olfactory receptor 10C1-like NW_004955524 278339 279310 + 102021910 AGCD01068674;XM_005409658 XP_005409715 MODEL 8986576 protein-coding LOC102026097 taste receptor type 2 member 31-like NW_004955413 8238228 8239157 - 102026097 AGCD01013858;XM_005379634 XP_005379691 MODEL 8996971 pseudo LOC102030593 uncharacterized protein C9orf78 homolog pseudogene NW_004955452 14245198 14246925 - 102030593 AGCD01044459 MODEL 9038875 ncrna LOC102005710 uncharacterized LOC102005710 NW_004955418 22750893 22756659 + 102005710 AGCD01019292;XR_260582 MODEL 8992073 ncrna LOC102024632 uncharacterized LOC102024632 NW_004955403 7768326 7771700 + 102024632 AGCD01001863;GBDF01305594;XR_259161 MODEL 8734097 protein-coding Epgn epithelial mitogen ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); growth factor activity (ortholog); receptor ligand activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell surface receptor signaling pathway (ortholog); epidermal growth factor receptor signaling pathway (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; FOUND IN extracellular region (ortholog); plasma membrane (ortholog) NW_004955474 564329 573014 + 102006240 AGCD01054223;XM_005401311;XM_013502765;XM_013502766 XP_005401368;XP_013358219;XP_013358220 MODEL 9059073 trna Trnai-uau transfer RNA isoleucine (anticodon UAU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955468;NW_004955465;NW_004955441;NW_004955483 149799;13289424;10151035;194221 149891;13289517;10151126;194314 +;+;+;- 101978796 AGCD01037076;AGCD01050597;AGCD01051684;AGCD01057602 MODEL 8703608 protein-coding Sox15 SRY-box transcription factor 15 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN cell differentiation (ortholog); myoblast development (ortholog); negative regulation of striated muscle tissue development (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); polycystic ovary syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955467 9333620 9335498 + 102008611 AGCD01051497;GBDI01384127;XM_005399474;XM_005399475 XP_005399531;XP_005399532 MODEL 39133401 snrna U4 U4 spliceosomal RNA 8998264 protein-coding Rhbdl1 rhomboid like 1 NW_004955442 16525009 16528780 - 102021604 AGCD01037901;GBDF01194169;XM_005391625;XM_005391626;XM_005391627;XM_013517764;XM_013517765;XM_013517766 XP_005391682;XP_005391683;XP_005391684;XP_013373218;XP_013373219;XP_013373220 MODEL 8961049 protein-coding Snai3 snail family transcriptional repressor 3 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of DNA-templated transcription (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH perinatal necrotizing enterocolitis (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955541 2593530 2599105 - 102004972 AGCD01071418;GBCB01024899;XM_005411019 XP_005411076 MODEL 8756517 pseudo LOC102023648 WD40 repeat-containing protein SMU1 pseudogene NW_004955448 11800512 11802298 - 102023648 AGCD01041533 MODEL 10085710 ncrna LOC106150015 uncharacterized LOC106150015 NW_004955460 152469 155457 + 106150015 AGCD01048337;GBDK01160015;XR_001236537 MODEL 8704307 protein-coding Ptpn6 protein tyrosine phosphatase non-receptor type 6 ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); cytokine receptor binding (ortholog); natural killer cell lectin-like receptor binding (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); CD27 signaling pathway (ortholog); cell differentiation (ortholog); PARTICIPATES IN angiotensin II signaling pathway via AT2 receptor; epidermal growth factor/neuregulin signaling pathway; erythropoietin signaling pathway; ASSOCIATED WITH anogenital venereal wart (ortholog); autism spectrum disorder (ortholog); calcinosis (ortholog); FOUND IN alpha-beta T cell receptor complex (ortholog); apical dendrite (ortholog); cell-cell junction (ortholog) NW_004955413 4525954 4547177 + 102009165 AGCD01013621;GBCQ01152113;XM_005378847;XM_005378848 XP_005378904;XP_005378905 MODEL 9037698 protein-coding Samd15 sterile alpha motif domain containing 15 NW_004955438 1273054 1283424 + 102014947 AGCD01034977;GBDF01081089;XM_005390196;XM_005390199;XM_013517155 XP_005390253;XP_005390256;XP_013372609 MODEL 10111445 ncrna LOC106148271 uncharacterized LOC106148271 NW_004955419 18936623 18946113 + 106148271 AGCD01020183;GBBH01042133;XR_001233560 MODEL 9039159 protein-coding LOC102017879 A-kinase anchor protein 2 NW_004955419 16940266 17406309 - 102017879 AGCD01020138;AGCD01020139;AGCD01020140;AGCD01020141;AGCD01020142;AGCD01020143;AGCD01020144;AGCD01020145;AGCD01020146;AGCD01020147;AGCD01020148;AGCD01020149;AGCD01020150;AGCD01020151;GBDI01328539;GBDK01021121;XM_005382747 XP_005382804 MODEL 8856610 pseudo LOC102029195 zinc finger protein 556-like NW_004955495 5427808 5433465 - 102029195 AGCD01062006;AGCD01062007;XR_264155 MODEL 9002056 pseudo LOC102026455 ADP-ribosylation factor-like protein 10 NW_004955430 23822094 23824155 - 102026455 AGCD01029840 MODEL 8915235 protein-coding Senp6 SUMO specific peptidase 6 ENCODES a protein that exhibits SUMO-specific endopeptidase activity (ortholog); INVOLVED IN protein desumoylation (ortholog); protein modification by small protein removal (ortholog); regulation of kinetochore assembly (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); postsynaptic cytosol (ortholog); presynaptic cytosol (ortholog) NW_004955502 4082217 4180696 + 102003042 AGCD01064327;AGCD01064328;AGCD01064329;AGCD01064330;GBDF01157242;GBDI01138539;XM_013505827 XP_013361281 MODEL 8922679 protein-coding Ppp1r3g protein phosphatase 1 regulatory subunit 3G ENCODES a protein that exhibits glycogen binding (ortholog); protein phosphatase binding (ortholog); INVOLVED IN glucose homeostasis (ortholog); positive regulation of glycogen (starch) synthase activity (ortholog); positive regulation of glycogen biosynthetic process (ortholog); FOUND IN cytoplasm (ortholog); protein phosphatase type 1 complex (ortholog) NW_004955465 8485273 8488181 - 102023127 AGCD01050474;AGCD01050475;GBBH01188992;GBDK01306249;XM_013521768 XP_013377222 MODEL 9018507 protein-coding LOC102003944 keratin-associated protein 15-1-like NW_004955407 29796762 29797163 + 102003944 AGCD01007615;XM_005375632 XP_005375689 MODEL 8727518 protein-coding Tlcd5 TLC domain containing 5 ASSOCIATED WITH exfoliation syndrome (ortholog) NW_004955412 21344464 21350675 + 102011421 AGCD01013021;GBCE01163283;XM_005378348;XM_005378349;XM_005378350 XP_005378405;XP_005378406;XP_005378407 MODEL 8854492 ncrna LOC102010969 uncharacterized LOC102010969 NW_004955452 5395349 5427078 - 102010969 AGCD01044025;AGCD01044026;AGCD01044027;AGCD01044028;AGCD01044029;AGCD01044030;AGCD01044031;GBCB01057543;XR_001236120;XR_262656 MODEL 8792398 protein-coding C1qtnf6 C1q and TNF related 6 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH middle cerebral artery infarction (ortholog); myocardial infarction (ortholog); type 1 diabetes mellitus (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); protein-containing complex (ortholog) NW_004955413 23661788 23669793 - 102008523 AGCD01014333;GBDK01025155;XM_013511301 XP_013366755 MODEL 9035084 pseudo LOC102028786 uncharacterized LOC102028786 NW_004955517 721323 792456 + 102028786 AGCD01067580;AGCD01067581 MODEL 10304380 protein-coding LOC106147177 extensin-like NW_004955408 1006477 1012375 - 106147177 AGCD01007947;AGCD01007948;GBDF01080268;GBDK01258042;XM_013507289 XP_013362743 MODEL 8994774 protein-coding Psma3 proteasome 20S subunit alpha 3 ENCODES a protein that exhibits structural constituent of proteasome (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); proteasome complex (ortholog) NW_004955466 11979482 11997952 + 102003955 AGCD01051106;GBDJ01081389;XM_005399214;XM_013521926 XP_005399271;XP_013377380 MODEL 8945916 protein-coding Rapsn receptor associated protein of the synapse ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); ionotropic glutamate receptor binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN establishment of protein localization to postsynaptic membrane (ortholog); neuromuscular junction development (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); PARTICIPATES IN acetylcholine signaling pathway via nicotinic acetylcholine receptor; ASSOCIATED WITH autoimmune disease (ortholog); congenital myasthenic syndrome (ortholog); congenital myasthenic syndrome 11 (ortholog); FOUND IN Golgi apparatus (ortholog); membrane (ortholog); neuromuscular junction (ortholog) NW_004955422 826556 834483 + 102021454 AGCD01022437;GBDI01027570;XM_005383970 XP_005384027 MODEL 8931283 protein-coding Pcp4 Purkinje cell protein 4 ENCODES a protein that exhibits calcium ion binding (ortholog); calmodulin binding (ortholog); RNA binding (ortholog); INVOLVED IN cellular response to L-glutamate (ortholog); negative regulation of neuron apoptotic process (ortholog); negative regulation of protein kinase activity (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); Experimental Mammary Neoplasms (ortholog); Huntington's disease (ortholog); FOUND IN axon (ortholog); neurofilament (ortholog); protein-containing complex (ortholog) NW_004955407 39853029 39908151 + 102021312 AGCD01007837;GBCE01155237;XM_005375850 XP_005375907 MODEL 9018083 ncrna LOC102012970 uncharacterized LOC102012970 NW_004955420 29437923 29445279 + 102012970 AGCD01021502;GBDJ01336190;XR_001233709;XR_001233710 MODEL 8748452 protein-coding Slc25a21 solute carrier family 25 member 21 ENCODES a protein that exhibits alpha-ketoglutarate transmembrane transporter activity (ortholog); INVOLVED IN mitochondrial alpha-ketoglutarate transmembrane transport (ortholog); ASSOCIATED WITH mitochondrial DNA depletion syndrome 18 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955409 23949794 24421944 + 102023668 AGCD01010074;AGCD01010075;AGCD01010076;AGCD01010077;AGCD01010078;AGCD01010079;AGCD01010080;AGCD01010081;AGCD01010082;AGCD01010083;GBDF01040578;XM_005376906;XM_005376907;XM_013510365;XM_013510366 XP_005376963;XP_005376964;XP_013365819;XP_013365820 MODEL 8846615 pseudo LOC102019021 vasculin-like protein 1 pseudogene NW_004955452 7262403 7283818 + 102019021 AGCD01044141;AGCD01044142;AGCD01044143;AGCD01044144 MODEL 9011336 protein-coding LOC102019416 chromosome unknown open reading frame, human C3orf52 ASSOCIATED WITH hypotrichosis 15 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955427 12488729 12518512 + 102019416 AGCD01027216;AGCD01027217;AGCD01027218;GBCE01142565;GBDK01395430;XM_005386611 XP_005386668 MODEL 9025440 protein-coding Plpp5 phospholipid phosphatase 5 ENCODES a protein that exhibits diacylglycerol diphosphate phosphatase activity (ortholog); phosphatidate phosphatase activity (ortholog); INVOLVED IN phospholipid dephosphorylation (ortholog) NW_004955463 13859492 13864104 - 102023340 AGCD01049892;GBDJ01276219;XM_005398444;XM_005398446 XP_005398501;XP_005398503 MODEL 8791540 pseudo LOC102028127 nucleosome assembly protein 1-like 1 NW_004955532 692357 694185 + 102028127 AGCD01070144;XR_264716 MODEL 9048317 protein-coding Sgms1 sphingomyelin synthase 1 ENCODES a protein that exhibits ceramide cholinephosphotransferase activity (ortholog); ceramide phosphoethanolamine synthase activity (ortholog); sphingomyelin synthase activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to tumor necrosis factor (ortholog); ceramide biosynthetic process (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH pulmonary edema (ortholog); FOUND IN Golgi membrane (ortholog); Golgi trans cisterna (ortholog); Golgi trans cisterna membrane (ortholog) NW_004955425 5507905 5819357 + 102030096 AGCD01025350;AGCD01025351;AGCD01025352;AGCD01025353;AGCD01025354;AGCD01025355;AGCD01025356;AGCD01025357;GBDI01187376;XM_005385896;XM_005385897;XM_013514835;XM_013514836;XM_013514837;XM_013514838;XM_013514839 XP_005385953;XP_005385954;XP_013370289;XP_013370290;XP_013370291;XP_013370292;XP_013370293 MODEL 39132829 snorna SNORA73 Small nucleolar RNA SNORA73 family 8964771 protein-coding Rnf122 ring finger protein 122 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of mitochondrial membrane potential (ortholog); positive regulation of apoptotic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog) NW_004955463 9684546 9699939 - 102008388 AGCD01049795;GBBH01005192;XM_005398405 XP_005398462 MODEL 8921463 protein-coding Wipf1 WAS/WASL interacting protein family member 1 ENCODES a protein that exhibits cytoskeletal anchor activity (ortholog); protein folding chaperone (ortholog); SH3 domain binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament-based movement (ortholog); positive regulation of protein export from nucleus (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog) NW_004955449 760382 831007 + 102021190 AGCD01041772;AGCD01041773;AGCD01041774;GBBH01142069;GBDF01014452;XM_013518745 XP_013374199 MODEL 8976014 pseudo LOC102005715 60S ribosomal protein L7 pseudogene NW_004955487 5975491 5976261 + 102005715 AGCD01059350 MODEL 8792886 pseudo LOC102030595 UDP-glucuronosyltransferase 1-9-like NW_004955453 2592274 2593341 - 102030595 AGCD01044634;XM_005395698 MODEL 8744051 pseudo LOC102006809 40S ribosomal protein SA pseudogene NW_004955431 11112412 11113388 - 102006809 AGCD01030224 MODEL 8988210 protein-coding Percc1 proline and glutamate rich with coiled coil 1 INVOLVED IN digestive tract morphogenesis (ortholog); enteroendocrine cell differentiation (ortholog); ASSOCIATED WITH Diarrhea 11 (ortholog) NW_004955442 15800513 15803478 - 102006618 AGCD01037878;GBDK01358496;XM_005391573;XM_013517682 XP_005391630;XP_013373136 MODEL 8957773 protein-coding Prm3 protamine 3 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN cytoplasm (ortholog) NW_004955442 7308621 7309105 + 102030572 AGCD01037623;GBDF01008604;XM_005391167 XP_005391224 MODEL 9061502 pseudo LOC102010970 dnaJ homolog subfamily B member 6-like NW_004955452 1116250 1116893 - 102010970 AGCD01043831 MODEL 8829052 protein-coding Lmtk3 lemur tyrosine kinase 3 ENCODES a protein that exhibits protein serine kinase activity (ortholog) NW_004955559 1994851 2011578 + 102021716 AGCD01073685;AGCD01073686;GBBH01192666;XM_013508949 XP_013364403 MODEL 8743583 ncrna LOC102010609 uncharacterized LOC102010609 NW_004955508 2826273 2855521 + 102010609 AGCD01065798;GBBH01228727;XR_001231644 MODEL 10084149 pseudo LOC106148272 protein FAM76A-like NW_004955419 2981982 2983816 + 106148272 AGCD01019691;AGCD01019692 MODEL 8715429 ncrna LOC102009800 uncharacterized LOC102009800 NW_004955407 17251314 17300456 + 102009800 AGCD01007243;AGCD01007244;AGCD01007245;AGCD01007246;GBDF01192314;XR_001231024 MODEL 8985927 ncrna LOC102027460 uncharacterized LOC102027460 NW_004955441 4220079 4236595 - 102027460 AGCD01036835;AGCD01036836;GBCQ01010629;XR_001235345;XR_001235346;XR_001235347 MODEL 9041652 pseudo LOC102008680 wiskott-Aldrich syndrome protein family member 1 pseudogene NW_004955403 9508735 9510324 + 102008680 AGCD01001908 MODEL 8919989 pseudo LOC102021911 protein kinase C iota type pseudogene NW_004955435 4713737 4714888 - 102021911 AGCD01032843 MODEL 8839380 protein-coding LOC102026101 olfactory receptor 52E2-like NW_004955414 20567868 20568821 + 102026101 AGCD01015380;XM_005380475 XP_005380532 MODEL 8998011 pseudo LOC102011352 transcriptional coactivator YAP1-like NW_004955431 1758354 1764850 + 102011352 AGCD01029917 MODEL 8939782 protein-coding LOC102024634 keratin-associated protein 10-11-like NW_004955728 8357 9502 - 102024634 AGCD01078208;XM_005415079 XP_005415136 MODEL 8860777 protein-coding Ppp1r42 protein phosphatase 1 regulatory subunit 42 ENCODES a protein that exhibits actin binding (ortholog); dynein complex binding (ortholog); tubulin binding (ortholog); INVOLVED IN regulation of phosphatase activity (ortholog); FOUND IN centrosome (ortholog); manchette (ortholog); microtubule cytoskeleton (ortholog) NW_004955444 12255381 12294605 + 102012136 AGCD01039067;GBDF01008759;XM_005392137;XM_005392138;XM_013518133 XP_005392194;XP_005392195;XP_013373587 MODEL 8985675 protein-coding LOC102017882 nuclear receptor subfamily 1 group I member 3-like NW_004955489 1878193 1883606 - 102017882 AGCD01059853;GBCQ01063310;XM_005404517;XM_005404518;XM_005404519 XP_005404574;XP_005404575;XP_005404576 MODEL 8960817 protein-coding Rcn2 reticulocalbin 2 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955450 1838836 1854045 + 102019002 AGCD01042371;GBCE01001531;XM_005393477 XP_005393534 MODEL 8709743 trna Trnak-cuu transfer RNA lysine (anticodon CUU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978827 AGCD01037806;AGCD01051106;AGCD01057606;AGCD01069830;AGCD01074502 MODEL 8702059 pseudo LOC102028787 60S ribosomal protein L36a-like NW_004955519 2803335 2804519 + 102028787 AGCD01067942;XM_005409209 MODEL 39133403 snrna U4 U4 spliceosomal RNA 9019091 protein-coding Epha1 EPH receptor A1 ENCODES a protein that exhibits ephrin receptor activity (ortholog); fibronectin binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cell surface receptor protein tyrosine kinase signaling pathway (ortholog); negative regulation of cell migration (ortholog); positive regulation of angiogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Alzheimer's disease (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); Colorectal Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955494 256008 268777 + 102024246 AGCD01061372;GBBH01102984;GBDI01325851;XM_005405360;XM_013504977 XP_005405417;XP_013360431 MODEL 8911657 protein-coding Snap23 synaptosome associated protein 23 ENCODES a protein that exhibits fusogenic activity (ortholog); SNAP receptor activity (ortholog); syntaxin binding (ortholog); INVOLVED IN cytotoxic T cell degranulation (ortholog); endosome to plasma membrane protein transport (ortholog); exocytic insertion of neurotransmitter receptor to postsynaptic membrane (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; vasopressin signaling pathway; vasopressin signaling pathway via receptor type 2; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Myocardial Ischemia (ortholog); FOUND IN adherens junction (ortholog); azurophil granule (ortholog); cytoplasm (ortholog) NW_004955416 9191123 9225103 + 102022915 AGCD01017080;GBCQ01039038;XM_005381344;XM_013512570;XM_013512571 XP_005381401;XP_013368024;XP_013368025 MODEL 8932229 ncrna LOC102005716 uncharacterized LOC102005716 NW_004955421 23197095 23198981 + 102005716 AGCD01022174;GBCB01036865;XR_260820 MODEL 8981267 protein-coding Slco2a1 solute carrier organic anion transporter family member 2A1 ENCODES a protein that exhibits prostaglandin transmembrane transporter activity (ortholog); INVOLVED IN prostaglandin transport (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); basal cell carcinoma (ortholog); Colorectal Neoplasms (ortholog); FOUND IN basal plasma membrane (ortholog) NW_004955501 4544065 4623615 + 102025267 AGCD01064131;AGCD01064132;GBDK01017783;XM_013505788 XP_013361242 MODEL 8810114 protein-coding LOC102023653 keratin-associated protein 10-9-like NW_004955728 26021 27031 - 102023653 AGCD01078208;XM_005415077 XP_005415134 MODEL 9033362 protein-coding Rhbdl2 rhomboid like 2 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); FOUND IN plasma membrane (ortholog) NW_004955452 16506830 16553594 - 102020301 AGCD01044514;GBDF01188796;XM_005395233;XM_005395235 XP_005395290;XP_005395292 MODEL 8850879 protein-coding Samd3 sterile alpha motif domain containing 3 NW_004955436 11017336 11074020 - 102016743 AGCD01033804;AGCD01033805;AGCD01033806;AGCD01033807;GBDF01114641;XM_005389195 XP_005389252 MODEL 8828098 protein-coding Rab37 RAB37, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GTPase activity (ortholog); INVOLVED IN positive regulation of autophagy (ortholog); regulation of eye photoreceptor cell development (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment (ortholog); photoreceptor connecting cilium (ortholog); secretory granule (ortholog) NW_004955553 1580234 1638290 + 102010638 AGCD01072892;AGCD01072893;GBDJ01241647;XM_005412240;XM_005412241;XM_005412242;XM_005412243;XM_013508642 XP_005412297;XP_005412298;XP_005412299;XP_005412300;XP_013364096 MODEL 9029858 protein-coding Psma4 proteasome 20S subunit alpha 4 ENCODES a protein that exhibits structural constituent of proteasome (ortholog); INVOLVED IN proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955450 925070 932237 + 102010961 AGCD01042346;GBDI01059858;XM_005393451;XM_005393452;XM_005393453;XM_005393454 XP_005393508;XP_005393509;XP_005393510;XP_005393511 MODEL 8885150 protein-coding LOC102026458 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like NW_004955513 4508086 4512667 + 102026458 AGCD01066929;AGCD01066930;GBBH01017730;XM_013506580 XP_013362034 MODEL 8945663 protein-coding Pcp4l1 Purkinje cell protein 4 like 1 NW_004955468 13004267 13022686 + 102009034 AGCD01052196;GBCE01169891;XM_013522481 XP_013377935 MODEL 9001307 ncrna LOC102029198 uncharacterized LOC102029198 NW_004955424 14215204 14222579 + 102029198 AGCD01024647;GBBH01057272;XR_261064 MODEL 8933548 protein-coding Slc25a22 solute carrier family 25 member 22 ENCODES a protein that exhibits amino acid:proton symporter activity (ortholog); L-glutamate transmembrane transporter activity (ortholog); INVOLVED IN L-glutamate transmembrane transport (ortholog); regulation of insulin secretion (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 3 (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955476 11334508 11338781 + 102010254 AGCD01055451;GBBH01118900;GBDF01154109;XM_013502999 XP_013358453 MODEL 8969211 pseudo LOC102003945 histone deacetylase 2-like NW_004955455 3394770 3415325 + 102003945 AGCD01045624;AGCD01045625;AGCD01045626 MODEL 8887516 protein-coding Plpp6 phospholipid phosphatase 6 ENCODES a protein that exhibits farnesyl diphosphatase activity (ortholog); hydrolase activity (ortholog); isoprenoid diphosphate phosphatase activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); farnesyl diphosphate catabolic process (ortholog); geranyl diphosphate metabolic process (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); nuclear envelope (ortholog); nuclear membrane (ortholog) NW_004955434 8953069 8955866 + 102024606 AGCD01032281;GBCE01162872;XM_005415386 XP_005415443 MODEL 8835678 protein-coding Tldc2 TBC/LysM-associated domain containing 2 INVOLVED IN negative regulation of cellular response to oxidative stress (ortholog) NW_004955422 24781476 24795112 - 102018842 AGCD01023235;AGCD01023236;GBBH01208237;XM_005384726;XM_013514016;XM_013514017;XM_013514018;XM_013514020 XP_005384783;XP_013369470;XP_013369471;XP_013369472;XP_013369474 MODEL 8858946 pseudo LOC102026104 nuclease-sensitive element-binding protein 1 pseudogene NW_004955475 6440727 6441856 + 102026104 AGCD01054973 MODEL 8979349 protein-coding Rnf123 ring finger protein 123 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN protein maturation (ortholog); protein polyubiquitination (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH hypertrophic cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); ubiquitin ligase complex (ortholog) NW_004955532 1595970 1622633 + 102016194 AGCD01070195;AGCD01070196;GBDF01187191;XM_005410209;XM_005410211 XP_005410266;XP_005410268 MODEL 8880799 protein-coding Ptpn7 protein tyrosine phosphatase non-receptor type 7 INVOLVED IN protein dephosphorylation (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog) NW_004955406 38233409 38249940 - 102022461 AGCD01006598;AGCD01006599;GBCE01150962;XM_005375204;XM_005375205;XM_005375206;XM_005375207;XM_013522339;XM_013522342;XM_013522343 XP_005375261;XP_005375262;XP_005375263;XP_005375264;XP_013377793;XP_013377796;XP_013377797 MODEL 8764986 protein-coding Wipf2 WAS/WASL interacting protein family member 2 NW_004955451 14821924 14856304 + 102011269 AGCD01043575;AGCD01043576;AGCD01043577;AGCD01043578;GBDI01020357;XM_005394352 XP_005394409 MODEL 8741546 ncrna LOC102010975 uncharacterized LOC102010975 NW_004955457 7328755 7340258 + 102010975 AGCD01046876;GBDF01145843;XR_262928 MODEL 8864750 protein-coding Trappc11 trafficking protein particle complex subunit 11 INVOLVED IN constitutive secretory pathway (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); Golgi organization (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 23 (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2S (ortholog); FOUND IN Golgi apparatus (ortholog); TRAPP complex (ortholog) NW_004955403 25168212 25211344 - 102008808 AGCD01002283;GBCQ01149377;XM_005373500;XR_001233561 XP_005373557 MODEL 9007799 protein-coding Rara retinoic acid receptor alpha ENCODES a protein that exhibits alpha-actinin binding (ortholog); chromatin binding (ortholog); chromatin DNA binding (ortholog); INVOLVED IN apoptotic cell clearance (ortholog); bone development (ortholog); cellular response to estrogen stimulus (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); amyotrophic lateral sclerosis (ortholog); Breast Neoplasms (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955451 14876663 14917134 + 102012391 AGCD01043579;AGCD01043580;AGCD01043581;AGCD01043582;GBDF01083494;GBDK01083214;XM_005394357;XM_013519320;XM_013519321;XM_013519322 XP_005394414;XP_013374774;XP_013374775;XP_013374776 MODEL 8733046 protein-coding Rcn3 reticulocalbin 3 ENCODES a protein that exhibits calcium ion binding (ortholog); INVOLVED IN collagen biosynthetic process (ortholog); ERAD pathway (ortholog); lung epithelium development (ortholog); ASSOCIATED WITH osteoarthritis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog) NW_004955559 1309621 1319925 - 102012810 AGCD01073640;GBCQ01100573;XM_005412867;XM_013509004;XM_013509005;XM_013509006 XP_005412924;XP_013364458;XP_013364459;XP_013364460 MODEL 8936614 protein-coding Snap25 synaptosome associated protein 25 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); lipid binding (ortholog); myosin binding (ortholog); INVOLVED IN associative learning (ortholog); axonogenesis (ortholog); calcium ion-regulated exocytosis of neurotransmitter (ortholog); PARTICIPATES IN insulin secretion pathway; ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); bipolar disorder (ortholog); congenital myasthenic syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); axon (ortholog); axonal growth cone (ortholog) NW_004955415 20133361 20218840 + 102023903 AGCD01016485;AGCD01016486;GBDK01292814;XM_005380870;XM_005380871;XM_005380872 XP_005380927;XP_005380928;XP_005380929 MODEL 8748736 protein-coding Lmx1a LIM homeobox transcription factor 1 alpha ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN axon guidance (ortholog); central nervous system development (ortholog); central nervous system neuron differentiation (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 7 (ortholog); Hearing Loss (ortholog); schizophrenia (ortholog) NW_004955462 11328583 11484438 + 102006223 AGCD01049389;AGCD01049390;AGCD01049391;GBCE01146328;XM_005398249;XM_013521354;XM_013521355 XP_005398306;XP_013376808;XP_013376809 MODEL 9005530 protein-coding LOC102010611 olfactory receptor 1013-like NW_004955511 1796248 1797165 + 102010611 AGCD01066380;XM_005407977 XP_005408034 MODEL 8717189 protein-coding LOC102008682 plakophilin-2-like NW_004956130 12 5617 + 102008682 AGCD01079104;GBDK01128349;GBDK01128352;XM_005415169 XP_005415226 MODEL 10165570 ncrna LOC106147178 uncharacterized LOC106147178 NW_004955524 3048411 3053940 - 106147178 AGCD01068853;GBDF01277738;XR_001231953 MODEL 10063073 ncrna LOC106150016 uncharacterized LOC106150016 NW_004955460 6779113 6790061 - 106150016 AGCD01048477;GBDF01303447;XR_001236538 MODEL 8742333 protein-coding C1qtnf7 C1q and TNF related 7 ENCODES a protein that exhibits identical protein binding (ortholog); FOUND IN extracellular region (ortholog) NW_004955480 8546222 8644361 - 102018493 AGCD01056729;AGCD01056730;GBDJ01388679;XM_005402531;XM_005402532;XM_005402533 XP_005402588;XP_005402589;XP_005402590 MODEL 8806570 ncrna LOC102011354 uncharacterized LOC102011354 NW_004955432 10743652 10745702 - 102011354 AGCD01030936;GBDF01250417;XR_261523 MODEL 9036679 pseudo LOC102003946 acyl-CoA-binding domain-containing protein 6 pseudogene NW_004955407 13736680 13744398 - 102003946 AGCD01007152 MODEL 8901788 ncrna LOC102006811 uncharacterized LOC102006811 NW_004955514 2676803 2682633 - 102006811 AGCD01067085;GBBH01015914;XR_001231769;XR_001231770;XR_001231771 MODEL 8959305 protein-coding Perm1 PPARGC1 and ESRR induced regulator, muscle 1 INVOLVED IN regulation of DNA-templated transcription (ortholog); response to muscle activity (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955486 9731317 9736821 + 102011669 AGCD01059198;GBDF01221642;XM_005404289;XM_013504203;XM_013504204 XP_005404346;XP_013359657;XP_013359658 MODEL 8999499 ncrna LOC102011827 uncharacterized LOC102011827 NW_004955592 446843 448929 - 102011827 AGCD01076315;GBCC01022945;XR_265138 MODEL 8987695 pseudo LOC102012971 spermine synthase pseudogene NW_004955422 11371620 11373194 + 102012971 AGCD01022755 MODEL 9048988 ncrna LOC102028790 uncharacterized LOC102028790 NW_004955435 3367229 3458904 - 102028790 AGCD01032785;AGCD01032786;AGCD01032787;GBDK01170689;XR_001234889;XR_261657 MODEL 8942634 protein-coding LOC102019025 zinc finger protein 14-like NW_004955454 7269898 7274969 + 102019025 AGCD01045291;GBDF01011085;XM_013520194;XM_013520195;XM_013520196;XM_013520197 XP_013375648;XP_013375649;XP_013375650;XP_013375651 MODEL 8703376 ncrna LOC102026108 uncharacterized LOC102026108 NW_004955416 24569709 24571723 + 102026108 AGCD01017570;GBDF01210261;XR_001233280;XR_001233281 MODEL 8998308 ncrna LOC102023654 uncharacterized LOC102023654 NW_004955403 33468833 33477961 - 102023654 AGCD01002454;GBDJ01132301;XR_259220 MODEL 8961650 protein-coding Senp7 SUMO specific peptidase 7 ENCODES a protein that exhibits SUMO-specific endopeptidase activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); protein desumoylation (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955427 2925159 3091932 - 102028108 AGCD01026907;AGCD01026908;AGCD01026909;AGCD01026910;AGCD01026911;AGCD01026912;AGCD01026913;AGCD01026914;GBCQ01128169;XM_005386320;XM_013515198;XM_013515199;XM_013515200;XM_013515201;XM_013515202;XM_013515203 XP_005386377;XP_013370652;XP_013370653;XP_013370654;XP_013370655;XP_013370656;XP_013370657 MODEL 10130735 pseudo LOC102015962 Ig heavy chain V-III region 23-like NW_004955487 127682 130180 - 102015962 AGCD01059207;AGCD01059208 MODEL 8892284 protein-coding LOC102019420 vomeronasal type-1 receptor 90-like NW_004955429 12493906 12494835 - 102019420 AGCD01028722;XM_005387252 XP_005387309 MODEL 8944330 ncrna LOC102028129 uncharacterized LOC102028129 NW_004955533 3295062 3328618 - 102028129 AGCD01070411;GBDI01154814;XR_001232028;XR_001232029;XR_264749 MODEL 9007428 protein-coding Psma5 proteasome 20S subunit alpha 5 ENCODES a protein that exhibits structural constituent of proteasome (ortholog); INVOLVED IN proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); osteoporosis (ortholog); steatotic liver disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955435 12823137 12845631 - 102026037 AGCD01033168;AGCD01033169;GBBH01061856;XM_005388853;XM_013516454 XP_005388910;XP_013371908 MODEL 10211058 protein-coding Sox17 SRY-box transcription factor 17 ENCODES a protein that exhibits beta-catenin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN angiogenesis (ortholog); cardiac cell fate determination (ortholog); cardiogenic plate morphogenesis (ortholog); ASSOCIATED WITH biliary atresia (ortholog); cholangiocarcinoma (ortholog); Colorectal Neoplasms (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955454 13689403 13690019 + 106149834 AGCD01045450;GBCE01132570;GBDK01360915;XM_013520252 XP_013375706 MODEL 39132828 snorna SNORA73 Small nucleolar RNA SNORA73 family 8801590 protein-coding Rhbdl3 rhomboid like 3 NW_004955481 7233305 7276085 + 102024907 AGCD01057058;GBBH01210574;GBCE01043483;XM_005402817 XP_005402874 MODEL 8743223 protein-coding LOC102021913 melanoma-associated antigen B1-like NW_004955531 838720 839739 - 102021913 AGCD01070014;XM_005410143 XP_005410200 MODEL 8837936 protein-coding Sgms2 sphingomyelin synthase 2 ENCODES a protein that exhibits ceramide cholinephosphotransferase activity (ortholog); ceramide phosphoethanolamine synthase activity (ortholog); sphingomyelin synthase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); ceramide phosphoethanolamine biosynthetic process (ortholog); regulation of bone mineralization (ortholog); ASSOCIATED WITH calvarial doughnut lesions with bone fragility (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); plasma membrane (ortholog) NW_004955496 1909347 1955004 - 102004618 AGCD01062261;GBCE01007641;XM_005406206;XM_005406207;XM_005406208;XM_005406209;XM_005406210;XM_005406211;XM_005406212;XM_013505416;XM_013505417 XP_005406263;XP_005406264;XP_005406265;XP_005406266;XP_005406267;XP_005406268;XP_005406269;XP_013360870;XP_013360871 MODEL 8828671 ncrna LOC102030597 uncharacterized LOC102030597 NW_004955406 36528970 36545640 - 102030597 AGCD01006556;GBDF01074112;XR_259509 MODEL 8799799 protein-coding LOC102007175 translationally-controlled tumor protein-like NW_004957362 28 1515 - 102007175 AGCD01080758;XM_005415228 XP_005415285 MODEL 8715783 protein-coding LOC102024636 keratin-associated protein 4-3-like NW_004955451 15571355 15602825 - 102024636 AGCD01043618;AGCD01043619;AGCD01043620;AGCD01043621;XM_013519179 XP_013374633 MODEL 8909681 protein-coding Pcsk1 proprotein convertase subtilisin/kexin type 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); identical protein binding (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN insulin processing (ortholog); neurogenesis (ortholog); pancreas development (ortholog); PARTICIPATES IN altered energy homeostasis pathway; altered melanocortin system pathway; melanocortin system pathway; ASSOCIATED WITH Body Weight (ortholog); Dehydration (ortholog); Dwarfism (ortholog); FOUND IN axon terminus (ortholog); dendrite (ortholog); extracellular region (ortholog) NW_004955418 16181809 16224274 + 102012537 AGCD01019121;AGCD01019122;GBDI01347516;XM_005382232 XP_005382289 MODEL 9024781 protein-coding Prmt1 protein arginine methyltransferase 1 ENCODES a protein that exhibits arginine N-methyltransferase activity (ortholog); enzyme binding (ortholog); GATOR1 complex binding (ortholog); INVOLVED IN cardiac muscle tissue development (ortholog); cellular response to methionine (ortholog); DNA damage response (ortholog); PARTICIPATES IN androgen signaling pathway; estrogen signaling pathway; histone modification pathway; ASSOCIATED WITH asthma (ortholog); cleft palate (ortholog); Cocaine-Related Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lysosomal membrane (ortholog) NW_004955559 1205340 1215672 - 102009115 AGCD01073634;AGCD01073635;AGCD01073636;GBBH01032002;XM_005412853;XM_005412854;XM_005412855;XM_005412856;XM_013508977;XM_013508978 XP_005412910;XP_005412911;XP_005412912;XP_005412913;XP_013364431;XP_013364432 MODEL 8825298 trna Trnak-uuu transfer RNA lysine (anticodon UUU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978826 AGCD01006660;AGCD01022734;AGCD01040255;AGCD01042735;AGCD01050592;AGCD01050596;AGCD01050635;AGCD01051475;AGCD01054570;AGCD01066489;AGCD01066490 MODEL 8917437 protein-coding Ppp1r7 protein phosphatase 1 regulatory subunit 7 ENCODES a protein that exhibits protein phosphatase regulator activity (ortholog); INVOLVED IN chromosome segregation (ortholog); FOUND IN chromosome (ortholog) NW_004955542 520605 539699 - 102011697 AGCD01071474;GBDK01076342;XM_005411141;XM_013508062;XM_013508063;XM_013508064 XP_005411198;XP_013363516;XP_013363517;XP_013363518 MODEL 8977656 protein-coding Epha10 EPH receptor A10 ENCODES a protein that exhibits ATP binding (ortholog); transmembrane-ephrin receptor activity (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 88 (ortholog) NW_004955452 15510054 15547769 - 102014005 AGCD01044486;AGCD01044487;GBDF01009991;XM_013519462 XP_013374916 MODEL 8903401 protein-coding Tle1 TLE family member 1, transcriptional corepressor ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of anoikis (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN beta-catenin-TCF complex (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955530 1936936 2028803 + 102008658 AGCD01069903;AGCD01069904;GBBH01187430;GBCB01002607;XM_005410111;XM_005410112;XM_005410113;XM_005410114;XM_013507549 XP_005410168;XP_005410169;XP_005410170;XP_005410171;XP_013363003 MODEL 8913105 protein-coding Slco2b1 solute carrier organic anion transporter family member 2B1 ENCODES a protein that exhibits prostaglandin transmembrane transporter activity (ortholog); secondary active transmembrane transporter activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to iron ion starvation (ortholog); heme import into cell (ortholog); PARTICIPATES IN statin pharmacokinetics pathway; ASSOCIATED WITH liver cancer (ortholog); pancreatic cancer (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955414 16615012 16664784 - 102028951 AGCD01015220;AGCD01015221;AGCD01015222;GBDJ01238886;XM_013512025;XM_013512026 XP_013367479;XP_013367480 MODEL 9029836 protein-coding LOC102009805 translation initiation factor IF-2-like NW_004955408 1538854 1542633 - 102009805 AGCD01007963;AGCD01007964;GBCE01168250;XM_013507120 XP_013362574 MODEL 8903698 pseudo LOC102027461 centrosomal protein of 70 kDa pseudogene NW_004955546 2451334 2453113 + 102027461 AGCD01072092 MODEL 8824426 pseudo LOC102026461 protein RUFY3 pseudogene NW_004955432 5222445 5223434 + 102026461 AGCD01030768 MODEL 8846858 ncrna LOC102029199 uncharacterized LOC102029199 NW_004955424 19035988 19039599 + 102029199 AGCD01024802;GBDF01113514;XR_001234132;XR_001234133;XR_001234134 MODEL 8732733 protein-coding Rcor1 REST corepressor 1 ENCODES a protein that exhibits chromatin binding (ortholog); enzyme binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); Joubert syndrome (ortholog); FOUND IN DNA repair complex (ortholog); histone methyltransferase complex (ortholog); nucleoplasm (ortholog) NW_004955538 1774910 1880550 + 102003586 AGCD01071088;AGCD01071089;GBDF01187302;GBDJ01279131;XM_005410756;XM_013507882 XP_005410813;XP_013363336 MODEL 9021314 protein-coding Rarb retinoic acid receptor beta ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); heterocyclic compound binding (ortholog); nuclear receptor activity (ortholog); INVOLVED IN bone development (ortholog); embryonic digestive tract development (ortholog); embryonic eye morphogenesis (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); asbestos-related lung carcinoma (ortholog); autism spectrum disorder (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955430 17067536 17457558 + 102013109 AGCD01029649;AGCD01029650;AGCD01029651;AGCD01029652;AGCD01029653;AGCD01029654;AGCD01029655;AGCD01029656;AGCD01029657;GBDF01287994;XM_005387488 XP_005387545 MODEL 9027470 protein-coding LOC102017883 zinc finger protein 75D NW_004955489 9388240 9400320 + 102017883 AGCD01060038;AGCD01060039;GBCE01139029;XM_005404607;XM_013504455 XP_005404664;XP_013359909 MODEL 8997720 protein-coding Rhbg Rh family B glycoprotein ENCODES a protein that exhibits ammonium channel activity (ortholog); ankyrin binding (ortholog); carbon dioxide transmembrane transporter activity (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); transepithelial ammonium transport (ortholog); FOUND IN basolateral plasma membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955545 2491417 2504013 + 102027116 AGCD01071906;AGCD01071907;GBCQ01000909;XM_005411675;XM_005411676;XM_013508364;XR_001232203 XP_005411732;XP_005411733;XP_013363818 MODEL 8918878 ncrna LOC102008684 uncharacterized LOC102008684 NW_004955403 54070872 54077075 - 102008684 AGCD01003087;GBDJ01213136;XR_001234164;XR_001234165;XR_001234166;XR_001234167;XR_001234168;XR_001234169;XR_001234171;XR_001234172;XR_001234173 MODEL 9008631 pseudo LOC102005717 hippocampus abundant transcript 1 protein pseudogene NW_004955490 4529263 4530710 - 102005717 AGCD01060188 MODEL 8726625 pseudo LOC102006814 cysteine-rich PDZ-binding protein pseudogene NW_004955433 2469951 2470255 - 102006814 AGCD01031393 MODEL 8749266 protein-coding Rnf125 ring finger protein 125 ENCODES a protein that exhibits p53 binding (ortholog); ubiquitin conjugating enzyme binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); negative regulation of RIG-I signaling pathway (ortholog); negative regulation of type I interferon production (ortholog); ASSOCIATED WITH genetic disease (ortholog); Tenorio Syndrome (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); VCP-NPL4-UFD1 AAA ATPase complex (ortholog) NW_004955402 19276157 19310605 + 102020734 AGCD01000554;AGCD01000555;AGCD01000556;AGCD01000557;AGCD01000558;GBDJ01276649;XM_005372751 XP_005372808 MODEL 8753367 protein-coding Rab38 RAB38, member RAS oncogene family ENCODES a protein that exhibits AP-1 adaptor complex binding (ortholog); AP-2 adaptor complex binding (ortholog); AP-3 adaptor complex binding (ortholog); INVOLVED IN endosome to melanosome transport (ortholog); eye pigmentation (ortholog); melanosome assembly (ortholog); ASSOCIATED WITH Albuminuria (ortholog); Hermansky-Pudlak syndrome (ortholog); proteinuria (ortholog); FOUND IN cell body (ortholog); early endosome (ortholog); early endosome lumen (ortholog) NW_004955414 5158860 5214108 + 102006016 AGCD01014888;AGCD01014889;GBCQ01095846;XM_005379731 XP_005379788 MODEL 8986635 protein-coding Ptpn9 protein tyrosine phosphatase non-receptor type 9 ENCODES a protein that exhibits protein tyrosine phosphatase activity (ortholog); INVOLVED IN negative regulation of neuron projection development (ortholog); peptidyl-tyrosine dephosphorylation (ortholog); positive regulation of protein localization to plasma membrane (ortholog); FOUND IN cytoplasm (ortholog); neuron projection terminus (ortholog) NW_004955450 2725755 2796390 + 102027249 AGCD01042400;AGCD01042401;AGCD01042402;AGCD01042403;AGCD01042404;AGCD01042405;AGCD01042406;AGCD01042407;GBCB01073974;GBDF01189354;XM_005393506 XP_005393563 MODEL 8757250 protein-coding Samd4a sterile alpha motif domain containing 4A ENCODES a protein that exhibits translation repressor activity (ortholog); INVOLVED IN positive regulation of translation (ortholog); regulation of postsynapse assembly (ortholog); ASSOCIATED WITH head and neck squamous cell carcinoma (ortholog); substance-related disorder (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); postsynaptic density (ortholog) NW_004955409 8716432 8916398 - 102029594 AGCD01009424;AGCD01009425;GBCB01020589;XM_005376760 XP_005376817 MODEL 8891467 pseudo LOC102011828 transcription initiation factor TFIID subunit 13 pseudogene NW_004955402 57682424 57682792 + 102011828 AGCD01001507 MODEL 9019876 protein-coding LOC102010978 vegetative cell wall protein gp1-like NW_004955410 12702718 12714924 - 102010978 AGCD01010864;GBDJ01264475;XM_005377303;XM_013510591 XP_005377360;XP_013366045 MODEL 8870052 protein-coding Snap29 synaptosome associated protein 29 INVOLVED IN autophagosome maturation (ortholog); autophagosome membrane docking (ortholog); cilium assembly (ortholog); ASSOCIATED WITH CEDNIK syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN autophagosome (ortholog); ciliary pocket membrane (ortholog); cytoplasm (ortholog) NW_004955442 19419381 19446782 - 102026163 AGCD01038057;AGCD01038058;AGCD01038059;AGCD01038060;GBDF01082896;XM_005391838 XP_005391895 MODEL 8845505 protein-coding Senp8 SUMO peptidase family member, NEDD8 specific ASSOCIATED WITH Neurodevelopmental Disorders (ortholog) NW_004955450 4978767 5001678 - 102005759 AGCD01042487;AGCD01042488;GBDF01278519;XM_005393625 XP_005393682 MODEL 8729790 protein-coding Plpp7 phospholipid phosphatase 7 (inactive) INVOLVED IN negative regulation of myotube differentiation (ortholog); FOUND IN nuclear envelope (ortholog) NW_004955513 1081748 1092025 + 102021379 AGCD01066840;AGCD01066841;GBCB01005805;XM_005408361 XP_005408418 MODEL 8783366 protein-coding Slc25a23 solute carrier family 25 member 23 ENCODES a protein that exhibits adenine nucleotide transmembrane transporter activity (ortholog); ADP:phosphate antiporter activity (ortholog); ATP:phosphate antiporter activity (ortholog); INVOLVED IN adenine nucleotide transport (ortholog); calcium import into the mitochondrion (ortholog); cellular response to calcium ion (ortholog); FOUND IN mitochondrion (ortholog) NW_004955495 3155024 3171279 + 102004728 AGCD01061828;AGCD01061829;AGCD01061830;AGCD01061831;GBBH01117839;GBDI01080406;XM_013505307 XP_013360761 MODEL 8936266 protein-coding LOC102010612 olfactory receptor 10AG1-like NW_004955511 892359 900459 - 102010612 AGCD01066346;XM_005408216 XP_005408273 MODEL 39133405 snrna U4 U4 spliceosomal RNA 8908763 protein-coding Psma6 proteasome 20S subunit alpha 6 ENCODES a protein that exhibits NF-kappaB binding (ortholog); RNA binding (ortholog); structural constituent of proteasome (ortholog); INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); myocardial infarction (ortholog); FOUND IN ciliary tip (ortholog); cytoplasm (ortholog); myofibril (ortholog) NW_004955409 25751578 25787533 - 102030047 AGCD01010134;AGCD01010135;AGCD01010136;AGCD01010137;AGCD01010138;GBDF01006465;XM_005376923;XM_005376924 XP_005376980;XP_005376981 MODEL 8853375 pseudo LOC102007176 uncharacterized LOC102007176 NW_004955403 21438343 21464628 - 102007176 AGCD01002196 MODEL 8861980 protein-coding LOC102030601 zinc finger protein 791-like NW_004955456 28407 46855 + 102030601 AGCD01046192;AGCD01046193;AGCD01046194;GBDI01011285;XM_013520656 XP_013376110 MODEL 9064871 protein-coding LOC102024639 keratin-associated protein 9-1-like NW_004955451 15671886 15690953 + 102024639 AGCD01043631;AGCD01043632;AGCD01043633;AGCD01043634;XM_013519129 XP_013374583 MODEL 10361026 protein-coding LOC106150017 translation initiation factor IF-2-like NW_004955460 315054 315615 + 106150017 AGCD01048340;GBDF01113276;XM_013521284 XP_013376738 MODEL 10088063 protein-coding LOC106148273 translation initiation factor IF-2-like NW_004955419 1024507 1027797 + 106148273 AGCD01019628;GBDJ01123836;XM_013513096 XP_013368550 MODEL 8908293 protein-coding Sgo1 shugoshin 1 ENCODES a protein that exhibits kinase binding (ortholog); INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); centriole-centriole cohesion (ortholog); chromosome segregation (ortholog); ASSOCIATED WITH Cardiac Arrhythmias (ortholog); chronic atrial and intestinal dysrhythmia (ortholog); Chronobiology Disorders (ortholog); FOUND IN centrosome (ortholog); chromosome, centromeric region (ortholog); condensed chromosome, centromeric region (ortholog) NW_004955430 12200601 12216845 - 102006155 AGCD01029489;AGCD01029490;GBDF01279460;XM_005387467;XM_005387468;XM_013515668;XM_013515669 XP_005387524;XP_005387525;XP_013371122;XP_013371123 MODEL 8918424 protein-coding Rarg retinoic acid receptor gamma ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); bone development (ortholog); bone morphogenesis (ortholog); PARTICIPATES IN retinoic acid signaling pathway; ASSOCIATED WITH Cardiotoxicity (ortholog); cleft palate (ortholog); heart disease (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955458 480257 501172 - 102016349 AGCD01047129;AGCD01047130;GBCC01032927;XM_013520911;XM_013520912;XM_013520913;XM_013520914 XP_013376365;XP_013376366;XP_013376367;XP_013376368 MODEL 9018476 trna Trnal-aag transfer RNA leucine (anticodon AAG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955493;NW_004955465;NW_004955550;NW_004955550 931996;13766471;1486047;1410172 932077;13766552;1486128;1410253 +;-;-;+ 101978790 AGCD01050622;AGCD01060872;AGCD01072566;AGCD01072577 MODEL 8877546 ncrna LOC102026115 uncharacterized LOC102026115 NW_004955419 4388701 4395368 - 102026115 AGCD01019757;GBDF01162328;XR_001233599 MODEL 8916792 protein-coding Trappc12 trafficking protein particle complex subunit 12 INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); Golgi organization (ortholog); metaphase chromosome alignment (ortholog); ASSOCIATED WITH ENCEPHALOPATHY, PROGRESSIVE, EARLY-ONSET, WITH BRAIN ATROPHY AND SPASTICITY (ortholog); genetic disease (ortholog); hydrocephalus (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog); kinetochore (ortholog) NW_004955487 3824872 3863859 - 102019177 AGCD01059294;AGCD01059295;GBDF01120062;XM_005404378 XP_005404435 MODEL 8975151 protein-coding LOC102028794 adenosine receptor A3 NW_004955435 14965337 14985864 - 102028794 AGCD01033258;AGCD01033259;GBDF01097988;XM_013516497;XM_013516498 XP_013371951;XP_013371952 MODEL 8907949 protein-coding LOC102023656 neuroblast differentiation-associated protein AHNAK-like NW_004956544 18 3824 + 102023656 AGCD01079770;AGCD01079771;GBCB01004226;GBDJ01017228;XM_013510230 XP_013365684 MODEL 9024714 pseudo LOC102006815 peroxiredoxin-1 pseudogene NW_004955434 1326675 1356641 - 102006815 AGCD01032061;AGCD01032062;AGCD01032063 MODEL 9002451 pseudo LOC102015963 U6 snRNA-associated Sm-like protein LSm8 pseudogene NW_004955422 11656699 11657139 + 102015963 AGCD01022765 MODEL 8753260 protein-coding LOC102028137 vomeronasal type-1 receptor 4-like NW_004955558 445988 446935 - 102028137 AGCD01073370;XM_005412734 XP_005412791 MODEL 9035258 protein-coding Lmx1b LIM homeobox transcription factor 1 beta ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN autophagosome-lysosome fusion (ortholog); camera-type eye development (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH clubfoot (ortholog); disease of mental health (ortholog); familial hyperlipidemia (ortholog); FOUND IN nucleus (ortholog) NW_004955419 1782566 1857375 - 102010371 AGCD01019658;AGCD01019659;GBCE01047362;XM_005382450;XM_005382451 XP_005382507;XP_005382508 MODEL 39132863 snorna SNORA73 Small nucleolar RNA SNORA73 family 9063294 protein-coding LOC102019422 pancreatic triacylglycerol lipase-like NW_004955431 21351823 21373520 + 102019422 AGCD01030496;XM_005387907 XP_005387964 MODEL 10222008 ncrna LOC106147179 uncharacterized LOC106147179 NW_004955524 3766903 3775886 + 106147179 AGCD01068926;AGCD01068927;GBCE01161144;XR_001231954 MODEL 8714451 pseudo LOC102003947 cytochrome c oxidase subunit 7A2, mitochondrial pseudogene NW_004955408 862783 863268 + 102003947 AGCD01007937 MODEL 9037605 protein-coding LOC102011357 death-inducer obliterator 1-like NW_004955528 1209085 1240649 + 102011357 AGCD01069553;AGCD01069554;AGCD01069555;AGCD01069556;GBDF01089866;XM_013507433 XP_013362887 MODEL 10076501 protein-coding C1qtnf8 C1q and TNF related 8 INVOLVED IN positive regulation of cell motility (ortholog); FOUND IN extracellular region (ortholog) NW_004955442 16159901 16162152 + 106149289 AGCD01037893;XM_013517653 XP_013373107 MODEL 9037178 protein-coding Pcsk1n proprotein convertase subtilisin/kexin type 1 inhibitor ENCODES a protein that exhibits endopeptidase inhibitor activity (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN peptide hormone processing (ortholog); response to cold (ortholog); response to dietary excess (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Alzheimer's disease (ortholog); Dehydration (ortholog); FOUND IN extracellular region (ortholog); secretory granule (ortholog); trans-Golgi network (ortholog) NW_004955543 383984 387885 - 102022635 AGCD01071579;AGCD01071580;GBCQ01012838;XM_005411368 XP_005411425 MODEL 8798788 pseudo LOC102019026 poly(rC)-binding protein 1-like NW_004955454 7523214 7539387 - 102019026 AGCD01045300;AGCD01045301 MODEL 8922723 protein-coding Wipf3 WAS/WASL interacting protein family member 3 ENCODES a protein that exhibits SH3 domain binding (ortholog); FOUND IN synapse (ortholog) NW_004955410 31166874 31227377 + 102027826 AGCD01011317;AGCD01011318;GBCQ01031184;XM_013510497 XP_013365951 MODEL 9002377 protein-coding Ppp1r8 protein phosphatase 1 regulatory subunit 8 ENCODES a protein that exhibits molecular function inhibitor activity (ortholog); protein phosphatase regulator activity (ortholog); RNA endonuclease activity (ortholog); INVOLVED IN cell population proliferation (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955452 7022114 7042770 + 102009908 AGCD01044131;GBBH01186991;XM_005394930;XM_005394931 XP_005394987;XP_005394988 MODEL 10096419 protein-coding LOC106148274 uncharacterized LOC106148274 NW_004955419 1858150 1933590 + 106148274 AGCD01019660;AGCD01019661;XM_013513098 XP_013368552 MODEL 8999334 protein-coding Epha2 EPH receptor A2 ENCODES a protein that exhibits ephrin receptor activity (ortholog); growth factor binding (ortholog); molecular function activator activity (ortholog); INVOLVED IN axial mesoderm formation (ortholog); blood vessel development (ortholog); blood vessel endothelial cell proliferation involved in sprouting angiogenesis (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH cataract (ortholog); cataract 6 multiple types (ortholog); disease of cellular proliferation (ortholog); FOUND IN cell junction (ortholog); cell surface (ortholog); focal adhesion (ortholog) NW_004955527 2120447 2151932 + 102004197 AGCD01069422;AGCD01069423;GBDI01327302;XM_005409845 XP_005409902 MODEL 8807962 protein-coding LOC102005721 RNA-binding protein 14 NW_004955422 18730230 18755479 - 102005721 AGCD01022960;GBBH01033313;XM_005384379;XM_005384380;XM_005384381;XM_005384383;XM_005384385;XM_013513904;XM_013513905;XM_013513906 XP_005384436;XP_005384437;XP_005384438;XP_005384440;XP_005384442;XP_013369358;XP_013369359;XP_013369360 MODEL 8868414 protein-coding Tle2 TLE family member 2, transcriptional corepressor ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH lymphopenia (ortholog); neutropenia (ortholog); FOUND IN nuclear body (ortholog) NW_004955495 5347496 5366743 + 102026761 AGCD01062002;GBBH01012059;GBDI01296754;XM_013505226 XP_013360680 MODEL 9012513 pseudo LOC102011829 cytochrome c oxidase subunit 7A2, mitochondrial pseudogene NW_004955402 1161682 1162083 - 102011829 AGCD01000049;XM_005373139 MODEL 8991684 protein-coding Slco3a1 solute carrier organic anion transporter family member 3A1 ENCODES a protein that exhibits prostaglandin transmembrane transporter activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN phenylalanine transport (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); positive regulation of MAPK cascade (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955416 20186940 20483844 + 102016156 AGCD01017451;AGCD01017452;AGCD01017453;AGCD01017454;GBCB01043430;GBDI01297533;XM_005381597 XP_005381654 MODEL 8897503 ncrna LOC102021918 uncharacterized LOC102021918 NW_004955438 17912640 17920107 - 102021918 AGCD01035456;XR_261946 MODEL 8959615 protein-coding LOC102026463 receptor-type tyrosine-protein phosphatase gamma-like NW_004955517 3495004 3557982 - 102026463 AGCD01067652;AGCD01067653;AGCD01067654;AGCD01067655;AGCD01067656;AGCD01067657;AGCD01067658;XM_005409046;XM_013506944;XM_013506945 XP_005409103;XP_013362398;XP_013362399 MODEL 8993850 pseudo LOC102026116 60S ribosomal protein L39 pseudogene NW_004955419 27983511 27984071 + 102026116 AGCD01020452 MODEL 8987744 ncrna LOC102017885 uncharacterized LOC102017885 NW_004955422 15698420 15702889 - 102017885 AGCD01022881;GBDF01159222;XR_001233961;XR_001233962;XR_001233963;XR_001233964 MODEL 9023530 protein-coding LOC102010984 sentrin-specific protease 3 NW_004955467 9351956 9374126 - 102010984 AGCD01051498;GBDJ01134691;XM_005399477;XM_005399478;XM_005399483;XM_013522078;XM_013522079;XM_013522080;XM_013522081;XM_013522082 XP_005399534;XP_005399535;XP_005399540;XP_013377532;XP_013377533;XP_013377534;XP_013377535;XP_013377536 MODEL 8715336 protein-coding Perp p53 apoptosis effector related to PMP22 INVOLVED IN amelogenesis (ortholog); desmosome organization (ortholog); heterotypic cell-cell adhesion (ortholog); ASSOCIATED WITH Erythrokeratodermia Variabilis et Progressiva 7 (ortholog); genetic disease (ortholog); Olmsted Syndrome 2 (ortholog); FOUND IN cytoplasm (ortholog); desmosome (ortholog); Golgi apparatus (ortholog) NW_004955436 21425321 21430780 + 102007150 AGCD01034054;GBCC01000076;GBDI01001313;XM_013516698 XP_013372152 MODEL 8745165 protein-coding Rcor2 REST corepressor 2 ENCODES a protein that exhibits enzyme binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955422 21102185 21111974 + 102025371 AGCD01023101;GBDF01277179;XM_005384656;XM_005384657;XM_013514350 XP_005384713;XP_005384714;XP_013369804 MODEL 8977572 ncrna LOC102008691 uncharacterized LOC102008691 NW_004955406 921242 942095 - 102008691 AGCD01005623;GBDF01120365;XR_001236178 MODEL 9009075 protein-coding Prmt2 protein arginine methyltransferase 2 ENCODES a protein that exhibits beta-catenin binding (ortholog); histone H3 methyltransferase activity (ortholog); histone methyltransferase activity (ortholog); INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN histone modification pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH asthma (ortholog); Cocaine-Related Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955407 42991305 43019332 + 102021733 AGCD01007902;GBDF01089964;XM_013505814 XP_013361268 MODEL 8965336 protein-coding LOC102012974 ubiquinol-cytochrome-c reductase complex assembly factor 1 INVOLVED IN mitochondrial respiratory chain complex III assembly (ortholog); FOUND IN Cbp3p-Cbp6 complex (ortholog); cytoplasmic vesicle (ortholog); mitochondrial inner membrane (ortholog) NW_004955422 26009078 26096300 + 102012974 AGCD01023273;AGCD01023274;AGCD01023275;GBDF01119443;XM_005384797 XP_005384854 MODEL 8935691 pseudo LOC102007177 60S ribosomal protein L7a-like NW_004955451 3799761 3801516 + 102007177 AGCD01043072;AGCD01043073;XR_262625 MODEL 10356262 protein-coding LOC106150018 uncharacterized LOC106150018 NW_004955460 11102710 11108274 + 106150018 AGCD01048629;GBDI01167897;XM_013521289 XP_013376743 MODEL 8933390 pseudo LOC102024640 SLAIN motif-containing protein 2 pseudogene NW_004955404 30188761 30197752 + 102024640 AGCD01004000 MODEL 8909439 pseudo LOC102003949 uncharacterized protein C9orf85 homolog pseudogene NW_004955409 16860918 16865775 + 102003949 AGCD01009746 MODEL 9065897 protein-coding Sox18 SRY-box transcription factor 18 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN angiogenesis (ortholog); blood vessel development (ortholog); blood vessel endothelial cell migration (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); basal cell carcinoma (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955528 204729 206772 + 102009103 AGCD01069514;AGCD01069515;GBBH01064583;GBBH01064584;XM_013507511 XP_013362965 MODEL 8879934 protein-coding Samd4b sterile alpha motif domain containing 4B ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN cerebellar neuron development (ortholog); FOUND IN cytosol (ortholog) NW_004955468 172331 199230 - 102023572 AGCD01051684;GBDJ01084508;XM_005399777;XM_005399779;XM_013522377;XM_013522378 XP_005399834;XP_005399836;XP_013377831;XP_013377832 MODEL 9038742 protein-coding LOC102027467 vomeronasal type-1 receptor 4-like NW_004955558 352361 357995 + 102027467 AGCD01073367;XM_005412732 XP_005412789 MODEL 8748204 protein-coding LOC102009806 inner nuclear membrane protein Man1 NW_004955458 11884435 11954683 + 102009806 AGCD01047763;AGCD01047764;GBBH01024965;GBCE01008629;XM_013520993 XP_013376447 MODEL 8735602 protein-coding Rab39a RAB39A, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); INVOLVED IN autophagosome-lysosome fusion (ortholog); phagosome acidification (ortholog); phagosome-lysosome fusion (ortholog); FOUND IN autolysosome membrane (ortholog); late endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955412 10224074 10240270 + 102004366 AGCD01012762;GBDF01262894;XM_013510971 XP_013366425 MODEL 8952616 ncrna LOC102029201 uncharacterized LOC102029201 NW_004955425 20175605 20180718 + 102029201 AGCD01025717;AGCD01025718;GBCQ01114847;XR_261159 MODEL 9037867 protein-coding LOC102023657 keratin-associated protein 9-3-like NW_004955451 15458308 15458960 - 102023657 AGCD01043609;XM_005394385 XP_005394442 MODEL 8922641 protein-coding Trappc13 trafficking protein particle complex subunit 13 NW_004955446 3433675 3467539 - 102019448 AGCD01040017;AGCD01040018;GBDF01158421;XM_013518409;XM_013518410 XP_013373863;XP_013373864 MODEL 8999395 pseudo LOC102006818 protein SET-like NW_004955436 20911043 20912325 + 102006818 AGCD01034043 MODEL 8765822 protein-coding Snap47 synaptosome associated protein 47 INVOLVED IN exocytic insertion of neurotransmitter receptor to postsynaptic membrane (ortholog); long-term synaptic potentiation (ortholog); ASSOCIATED WITH lung non-small cell carcinoma (ortholog); FOUND IN BLOC-1 complex (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955581 486087 525171 - 102017180 AGCD01075675;GBCE01008670;XM_005414246;XM_005414247;XM_013509738;XM_013509740 XP_005414303;XP_005414304;XP_013365192;XP_013365194 MODEL 39132859 snorna SNORA73 Small nucleolar RNA SNORA73 family 8927714 protein-coding Lnp1 leukemia NUP98 fusion partner 1 ASSOCIATED WITH NEURODEVELOPMENTAL DISORDER WITH EPILEPSY AND HYPOPLASIA OF THE CORPUS CALLOSUM (ortholog) NW_004955427 1929092 1956878 + 102021577 AGCD01026886;AGCD01026887;GBDF01000484;XM_005386296 XP_005386353 MODEL 39133407 snrna U4 U4 spliceosomal RNA 8731399 protein-coding Plppr1 phospholipid phosphatase related 1 ENCODES a protein that exhibits lysophosphatidic acid phosphatase activity (ortholog); INVOLVED IN nervous system development (ortholog); phospholipid dephosphorylation (ortholog); ASSOCIATED WITH visual epilepsy (ortholog); FOUND IN neuron projection (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955419 24544868 24809419 - 102010266 AGCD01020350;AGCD01020351;AGCD01020352;AGCD01020353;AGCD01020354;AGCD01020355;AGCD01020356;GBCE01026760;XM_005382804;XM_005382805;XM_013513312 XP_005382861;XP_005382862;XP_013368766 MODEL 8814966 protein-coding Rhce Rh blood group CcEe antigens INVOLVED IN ammonium transmembrane transport (ortholog); erythrocyte development (ortholog); multicellular organismal-level iron ion homeostasis (ortholog); ASSOCIATED WITH congenital hemolytic anemia (ortholog); megacolon (ortholog); Rh-Null Disease, Amorph Type (ortholog); FOUND IN ankyrin-1 complex (ortholog); membrane (ortholog) NW_004955452 4912882 4956174 - 102007179 AGCD01044001;AGCD01044002;AGCD01044003;GBDF01248710;XM_005394822;XM_013519668 XP_005394879;XP_013375122 MODEL 9059415 protein-coding Slc25a24 solute carrier family 25 member 24 ENCODES a protein that exhibits adenine nucleotide transmembrane transporter activity (ortholog); ADP:phosphate antiporter activity (ortholog); ATP transmembrane transporter activity (ortholog); INVOLVED IN adenine nucleotide transport (ortholog); cellular response to calcium ion (ortholog); cellular response to oxidative stress (ortholog); ASSOCIATED WITH dementia (ortholog); epilepsy with generalized tonic-clonic seizures (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN membrane (ortholog); mitochondrion (ortholog) NW_004955435 11895475 11933153 - 102017695 AGCD01033126;GBCQ01062812;XM_005388827;XM_013516545 XP_005388884;XP_013371999 MODEL 9047246 protein-coding Psma7 proteasome 20S subunit alpha 7 ENCODES a protein that exhibits identical protein binding (ortholog); structural constituent of proteasome (ortholog); INVOLVED IN proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); regulation of proteasomal protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); proteasome complex (ortholog) NW_004955528 1882397 1887811 + 102005631 AGCD01069575;GBDI01163625;GBDJ01371214;XM_005410038 XP_005410095 MODEL 8867791 protein-coding LOC102030606 uncharacterized LOC102030606 NW_004955408 30605083 30613712 - 102030606 AGCD01008812;GBDF01235915;XM_005376591;XR_001231746 XP_005376648 MODEL 8734410 pseudo LOC102019027 28S ribosomal protein S36, mitochondrial pseudogene NW_004955407 3770484 3771274 - 102019027 AGCD01006864 MODEL 8812317 protein-coding Rnf126 ring finger protein 126 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN cytoplasm protein quality control by the ubiquitin-proteasome system (ortholog); negative regulation of epidermal growth factor receptor signaling pathway (ortholog); positive regulation of double-strand break repair via homologous recombination (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955495 7083952 7098442 + 102021569 AGCD01062117;AGCD01062118;GBDJ01126521;XM_005406028;XM_013505310 XP_005406085;XP_013360764 MODEL 9017252 protein-coding Ptpra protein tyrosine phosphatase receptor type A ENCODES a protein that exhibits protein tyrosine phosphatase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN insulin receptor signaling pathway (ortholog); integrin-mediated signaling pathway (ortholog); modulation of chemical synaptic transmission (ortholog); PARTICIPATES IN insulin signaling pathway; ASSOCIATED WITH gastric adenocarcinoma (ortholog); Myocardial Ischemia (ortholog); FOUND IN focal adhesion (ortholog); membrane (ortholog); Schaffer collateral - CA1 synapse (ortholog) NW_004955415 13819934 13967068 + 102020110 AGCD01016269;AGCD01016270;AGCD01016271;AGCD01016272;AGCD01016273;AGCD01016274;AGCD01016275;AGCD01016276;AGCD01016277;AGCD01016278;GBCE01032562;XM_005380770;XM_005380771;XM_013512312;XM_013512313 XP_005380827;XP_005380828;XP_013367766;XP_013367767 MODEL 8795932 protein-coding Rarres1 retinoic acid receptor responder 1 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); follicular lymphoma (ortholog); Stomach Neoplasms (ortholog); FOUND IN extracellular region (ortholog); membrane (ortholog) NW_004955448 9437365 9466565 - 102027799 AGCD01041474;GBDJ01011329;XM_005393105;XM_005393106;XM_013518647;XM_013518648 XP_005393162;XP_005393163;XP_013374101;XP_013374102 MODEL 8855920 protein-coding Sgo2 shugoshin 2 INVOLVED IN female meiotic nuclear division (ortholog); intracellular protein localization (ortholog); male meiotic nuclear division (ortholog); FOUND IN chromosome, centromeric region (ortholog); condensed chromosome, centromeric region (ortholog); kinetochore (ortholog) NW_004955403 879354 905605 - 102005871 AGCD01001709;AGCD01001710;AGCD01001711;GBDF01051842;XM_005373247;XM_005373248;XM_013511911 XP_005373304;XP_005373305;XP_013367365 MODEL 8952810 protein-coding Ppp1r9a protein phosphatase 1 regulatory subunit 9A ENCODES a protein that exhibits actin filament binding (ortholog); GTPase binding (ortholog); identical protein binding (ortholog); INVOLVED IN actin filament organization (ortholog); calcium-mediated signaling (ortholog); cellular response to toxic substance (ortholog); ASSOCIATED WITH Experimental Seizures (ortholog); hepatocellular carcinoma (ortholog); Huntington's disease (ortholog); FOUND IN actin cytoskeleton (ortholog); cortical actin cytoskeleton (ortholog); cytoskeleton (ortholog) NW_004955432 11607269 11891568 + 102015138 AGCD01030954;AGCD01030955;AGCD01030956;AGCD01030957;GBCQ01126778;XM_005388052;XM_005388053;XM_005388054;XM_005388055;XM_005388056;XM_005388057;XM_005388058;XM_005388059;XM_013516008;XM_013516009 XP_005388109;XP_005388110;XP_005388111;XP_005388112;XP_005388113;XP_005388114;XP_005388115;XP_005388116;XP_013371462;XP_013371463 MODEL 9001699 protein-coding LOC102015965 chromosome unknown open reading frame, human C16orf82 NW_004955493 5286875 5344419 + 102015965 AGCD01061061;AGCD01061062;GBDF01008629;XM_013504745 XP_013360199 MODEL 8797070 protein-coding Samd5 sterile alpha motif domain containing 5 FOUND IN cytoplasm (ortholog) NW_004955867 2559 3237 - 102020516 AGCD01078524;GBCQ01114304;GBDK01194475;XM_005415139 XP_005415196 MODEL 10082692 ncrna LOC106147180 uncharacterized LOC106147180 NW_004955524 3763940 3765788 + 106147180 AGCD01068926;GBCE01091913;XR_001231955 MODEL 8995928 pseudo LOC102017887 small nuclear ribonucleoprotein Sm D2 pseudogene NW_004955422 19113364 19114426 + 102017887 AGCD01022978 MODEL 9015689 ncrna LOC102011358 uncharacterized LOC102011358 NW_004955436 18358012 18378034 - 102011358 AGCD01033960;GBDF01225067;XR_001234940 MODEL 8699945 protein-coding LOC102021923 malonyl-CoA decarboxylase, mitochondrial NW_004955564 281274 328682 - 102021923 AGCD01074195;AGCD01074196;AGCD01074197;AGCD01074198;GBDI01256173;XM_005413231;XM_005413232;XM_005413233;XM_005413234;XM_005413235;XM_005413236;XM_013509208 XP_005413288;XP_005413289;XP_005413290;XP_005413291;XP_005413292;XP_005413293;XP_013364662 MODEL 8782082 protein-coding C1r complement C1r ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); molecular sequestering activity (ortholog); INVOLVED IN complement activation, classical pathway (ortholog); zymogen activation (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome (ortholog); Ehlers-Danlos syndrome periodontal type 1 (ortholog); Ehlers-Danlos syndrome periodontal type 2 (ortholog); FOUND IN cell surface (ortholog); complement component C1 complex (ortholog); extracellular region (ortholog) NW_004955413 4652156 4660897 - 102011752 AGCD01013623;GBCE01007078;XM_005378856 XP_005378913 MODEL 8890414 protein-coding Pcsk2 proprotein convertase subtilisin/kexin type 2 ENCODES a protein that exhibits endopeptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN enkephalin processing (ortholog); insulin processing (ortholog); islet amyloid polypeptide processing (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH chronic kidney disease (ortholog); Endotoxemia (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN dendrite (ortholog); extracellular region (ortholog); membrane (ortholog) NW_004955415 26266513 26496905 + 102008940 AGCD01016593;AGCD01016594;AGCD01016595;AGCD01016596;GBDI01324096;XM_005380904 XP_005380961 MODEL 8761016 ncrna LOC102028797 uncharacterized LOC102028797 NW_004955437 3459086 3478431 + 102028797 AGCD01034319;AGCD01034320;GBDF01074660;XR_001235065;XR_261843 MODEL 8909297 protein-coding Wipi1 WD repeat domain, phosphoinositide interacting 1 ENCODES a protein that exhibits nuclear androgen receptor binding (ortholog); nuclear estrogen receptor binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH cholestasis (ortholog); lipid storage disease (ortholog); FOUND IN autophagosome membrane (ortholog); cytoplasm (ortholog); endosome membrane (ortholog) NW_004955478 4309975 4341107 + 102028856 AGCD01055847;GBDF01159484;XM_013503209;XM_013503210;XM_013503211 XP_013358663;XP_013358664;XP_013358665 MODEL 8906722 ncrna LOC102024643 uncharacterized LOC102024643 NW_004955405 30035636 30036902 - 102024643 AGCD01005263;XR_259411 MODEL 8842618 pseudo LOC102019436 60 kDa heat shock protein, mitochondrial pseudogene NW_004955439 9837307 9839540 - 102019436 AGCD01035844 MODEL 8737136 pseudo LOC102005723 putative olfactory receptor 9A1 NW_004955494 1730333 1731273 + 102005723 AGCD01061422 MODEL 8997795 protein-coding LOC102028147 vomeronasal type-2 receptor 116-like NW_004955584 739829 752517 + 102028147 AGCD01075957;AGCD01075958;GBCE01063969;XM_013509871 XP_013365325 MODEL 8842428 protein-coding Sephs1 selenophosphate synthetase 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cell redox homeostasis (ortholog); L-selenocysteine biosynthetic process (ortholog); ASSOCIATED WITH Ververi-Brady syndrome 2 (ortholog); FOUND IN chromosome (ortholog); cytoplasm (ortholog); nuclear membrane (ortholog) NW_004955429 20849526 20871074 + 102011347 AGCD01028991;GBDK01092936;XM_005387165;XM_005387168 XP_005387222;XP_005387225 MODEL 8966850 protein-coding Epha3 EPH receptor A3 ENCODES a protein that exhibits ephrin receptor activity (ortholog); GPI-linked ephrin receptor activity (ortholog); growth factor binding (ortholog); INVOLVED IN cell migration (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); cellular response to interleukin-1 (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH atrial fibrillation (ortholog); Fever (ortholog); pancreatic cancer (ortholog); FOUND IN early endosome (ortholog); extracellular region (ortholog); GABA-ergic synapse (ortholog) NW_004955407 4135671 4500900 - 102019666 AGCD01006872;AGCD01006873;AGCD01006874;AGCD01006875;AGCD01006876;AGCD01006877;AGCD01006878;AGCD01006879;AGCD01006880;AGCD01006881;GBBH01045871;XM_005375517;XM_005375518 XP_005375574;XP_005375575 MODEL 8776020 pseudo LOC102027468 ras-related protein Rab-5A-like NW_004955443 3223302 3224058 + 102027468 AGCD01038188 MODEL 9021053 pseudo LOC102026465 prefoldin subunit 4 pseudogene NW_004955435 18640825 18641418 + 102026465 AGCD01033408;XM_005389029 MODEL 8738033 protein-coding Sgpl1 sphingosine-1-phosphate lyase 1 ENCODES a protein that exhibits sphinganine-1-phosphate aldolase activity (ortholog); INVOLVED IN androgen metabolic process (ortholog); apoptotic signaling pathway (ortholog); ceramide metabolic process (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH genetic disease (ortholog); nephrotic syndrome (ortholog); RENI syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955437 20489641 20547105 - 102009318 AGCD01034874;AGCD01034875;AGCD01034876;AGCD01034877;GBCE01031815;XM_005390043;XM_013517017 XP_005390100;XP_013372471 MODEL 8732083 ncrna LOC102006819 uncharacterized LOC102006819 NW_004955532 2185792 2187582 + 102006819 AGCD01070222;GBCQ01093416;XR_001232007;XR_001232008;XR_001232009 MODEL 8911275 protein-coding Trappc14 trafficking protein particle complex subunit 14 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); INVOLVED IN cilium assembly (ortholog); regulation of cell population proliferation (ortholog); ASSOCIATED WITH primary autosomal recessive microcephaly 25 (ortholog); FOUND IN centriolar satellite (ortholog); cytoplasm (ortholog); midbody (ortholog) NW_004955573 644907 649363 + 102011708 AGCD01074995;AGCD01074996;GBCE01135187;XM_013509467 XP_013364921 MODEL 8757047 protein-coding Pes1 pescadillo ribosomal biogenesis factor 1 INVOLVED IN cell population proliferation (ortholog); maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH cholangiocarcinoma (ortholog); FOUND IN chromosome (ortholog); condensed chromosome (ortholog); nucleolus (ortholog) NW_004955455 4794189 4808235 - 102023433 AGCD01045688;GBDF01084939;XM_005396270 XP_005396327 MODEL 8790989 trna Trnal-caa transfer RNA leucine (anticodon CAA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955465;NW_004955418;NW_004955465;NW_004955465 13283889;29926451;13908819;13888432 13283993;29926556;13908923;13888537 -;+;+;- 101978789 AGCD01019491;AGCD01050597;AGCD01050633;AGCD01050634 MODEL 8762968 protein-coding Rcor3 REST corepressor 3 ENCODES a protein that exhibits enzyme binding (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); transcription repressor complex (ortholog) NW_004955489 1016124 1059795 - 102014908 AGCD01059825;AGCD01059826;GBCB01020600;GBDF01155577;XM_013504486 XP_013359940 MODEL 8818216 protein-coding Plppr2 phospholipid phosphatase related 2 NW_004955495 2270323 2279688 + 102021683 AGCD01061760;GBBH01044136;XM_005405660;XM_005405661 XP_005405717;XP_005405718 MODEL 10249109 pseudo LOC106148275 zinc finger protein 606-like NW_004955419 5429281 5440273 + 106148275 AGCD01019809;AGCD01019810 MODEL 8755481 pseudo LOC102007178 stress-induced-phosphoprotein 1-like NW_004955404 10266595 10270280 + 102007178 AGCD01003377 MODEL 10345203 ncrna LOC106150019 uncharacterized LOC106150019 NW_004955460 11115100 11119671 + 106150019 AGCD01048629;XR_001236541 MODEL 8775529 pseudo LOC102003953 60S ribosomal protein L12 pseudogene NW_004955463 738958 739526 - 102003953 AGCD01049497 MODEL 8739944 protein-coding Prmt3 protein arginine methyltransferase 3 ENCODES a protein that exhibits histone H4R3 methyltransferase activity (ortholog); methyltransferase activity (ortholog); modified amino acid binding (ortholog); INVOLVED IN dendritic spine morphogenesis (ortholog); negative regulation of protein ubiquitination (ortholog); negative regulation of retinoic acid biosynthetic process (ortholog); PARTICIPATES IN histidine metabolic pathway; histidinemia pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH asthma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955476 1222579 1331582 + 102006767 AGCD01055203;AGCD01055204;GBBH01149628;GBDJ01388986;XM_005401723 XP_005401780 MODEL 8986910 pseudo LOC102009848 transcription elongation factor B polypeptide 1 pseudogene NW_004955489 234222 234732 + 102009848 AGCD01059787 MODEL 8726959 protein-coding Sox2 SRY-box transcription factor 2 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN adenohypophysis development (ortholog); anatomical structure formation involved in morphogenesis (ortholog); cell fate commitment (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); Anophthalmia (ortholog); Ataxia (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955420 10671888 10674080 + 102023039 AGCD01020783;GBBH01034135;XM_005383075 XP_005383132 MODEL 8719849 protein-coding LOC102009819 splicing factor, arginine/serine-rich 19-like NW_004955413 3207197 3209122 - 102009819 AGCD01013568;GBDI01085078;XM_005378751;XM_005378752;XM_013511272;XR_001232932 XP_005378808;XP_005378809;XP_013366726 MODEL 8973782 protein-coding LOC102029202 tubulin alpha-1B chain NW_004955500 7991016 7995635 - 102029202 AGCD01063969;AGCD01063970;GBCC01001481;GBDK01010964;XM_013505703 XP_013361157 MODEL 8922685 pseudo LOC102023659 protein tyrosine phosphatase domain-containing protein 1-like NW_004955403 55090494 55091638 + 102023659 AGCD01003109 MODEL 8934322 protein-coding Slco4a1 solute carrier organic anion transporter family member 4A1 ENCODES a protein that exhibits prostaglandin transmembrane transporter activity (ortholog); thyroid hormone transmembrane transporter activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN thyroid hormone metabolic process (ortholog); PARTICIPATES IN multispecific organic anion transporter mediated transport pathway; ASSOCIATED WITH COVID-19 (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN cell junction (ortholog) NW_004955528 1436058 1449178 - 102024843 AGCD01069563;GBBH01201288;GBCQ01062658;XM_013507513 XP_013362967 MODEL 8758171 protein-coding LOC102011830 leucine-rich repeat-containing protein 37A3-like NW_004955651 5178 17838 + 102011830 AGCD01077802;AGCD01077803;AGCD01077804;AGCD01077805;AGCD01077806;AGCD01077807;AGCD01077808;GBDF01009797;XM_013510174 XP_013365628 MODEL 8958963 protein-coding Ptprb protein tyrosine phosphatase receptor type B ENCODES a protein that exhibits cadherin binding (ortholog); protein tyrosine phosphatase activity (ortholog); transmembrane receptor protein tyrosine kinase inhibitor activity (ortholog); INVOLVED IN angiogenesis (ortholog); dephosphorylation (ortholog); glial cell migration (ortholog); ASSOCIATED WITH angiosarcoma (ortholog); brain glioma (ortholog); breast angiosarcoma (ortholog); FOUND IN signaling receptor complex (ortholog) NW_004955405 10647777 10766909 - 102028492 AGCD01004816;AGCD01004817;AGCD01004818;AGCD01004819;AGCD01004820;AGCD01004821;AGCD01004822;GBDK01004065;XM_005374311;XM_005374312 XP_005374368;XP_005374369 MODEL 9051180 protein-coding LOC102010985 C-type lectin domain family 2 member F-like NW_004955413 7883706 7902234 + 102010985 AGCD01013835;GBDK01420751;XM_013511366;XM_013511367 XP_013366820;XP_013366821 MODEL 39133408 snrna U4 U4 spliceosomal RNA 39132856 snorna SNORA73 Small nucleolar RNA SNORA73 family 8816098 ncrna LOC102027469 uncharacterized LOC102027469 NW_004955446 6471298 6497622 - 102027469 AGCD01040097;GBDF01075592;XR_262374 MODEL 8716118 protein-coding LOC102008692 olfactory receptor 5P3-like NW_004955453 4970345 4985354 - 102008692 AGCD01044701;XM_013519758 XP_013375212 MODEL 8901481 protein-coding LOC102012975 keratin-associated protein 5-5-like NW_004955422 13414755 13423735 - 102012975 AGCD01022823;AGCD01022824;AGCD01022825;XM_013513832 XP_013369286 MODEL 8821333 protein-coding Snap91 synaptosome associated protein 91 ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); clathrin binding (ortholog); clathrin heavy chain binding (ortholog); INVOLVED IN axonogenesis (ortholog); chemical synaptic transmission (ortholog); clathrin coat assembly (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; ASSOCIATED WITH Alzheimer's disease (ortholog); middle cerebral artery infarction (ortholog); FOUND IN axon terminus (ortholog); clathrin-coated vesicle (ortholog); cytosol (ortholog) NW_004955411 11175587 11301145 - 102014541 AGCD01011808;AGCD01011809;AGCD01011810;AGCD01011811;AGCD01011812;AGCD01011813;GBBH01023636;XM_005377690;XM_005377691;XM_013510912;XM_013510914;XM_013510915;XM_013510916;XM_013510917;XM_013510918 XP_005377747;XP_005377748;XP_013366366;XP_013366368;XP_013366369;XP_013366370;XP_013366371;XP_013366372 MODEL 8756924 ncrna LOC102017890 uncharacterized LOC102017890 NW_004955424 1228693 1258354 - 102017890 AGCD01024233;AGCD01024234;GBDF01055490;XR_001234151;XR_261022 MODEL 8830870 ncrna LOC102021929 uncharacterized LOC102021929 NW_004955597 320901 337898 + 102021929 AGCD01076554;GBDF01041765;XR_001232548 MODEL 8855451 protein-coding Psma8 proteasome 20S subunit alpha 8 INVOLVED IN meiotic cell cycle (ortholog); proteasomal protein catabolic process (ortholog); regulation of meiosis I (ortholog); FOUND IN nucleus (ortholog); spermatoproteasome complex (ortholog) NW_004955402 14230119 14278987 + 102013668 AGCD01000422;AGCD01000423;GBDF01088864;XM_005372729 XP_005372786 MODEL 8931319 protein-coding Rhcg Rh family C glycoprotein ENCODES a protein that exhibits ammonium channel activity (ortholog); ankyrin binding (ortholog); carbon dioxide transmembrane transporter activity (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); intracellular monoatomic ion homeostasis (ortholog); regulation of pH (ortholog); ASSOCIATED WITH Hypoaldosteronism (ortholog); hypokalemia (ortholog); kidney failure (ortholog); FOUND IN apical plasma membrane (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955416 15639425 15657708 + 102028747 AGCD01017336;AGCD01017337;AGCD01017338;GBDI01026790;XM_005381554 XP_005381611 MODEL 8887067 protein-coding LOC102011365 immunoglobulin iota chain NW_004955442 17173705 17174412 - 102011365 AGCD01037944;GBBH01018271;XM_005391688 XP_005391745 MODEL 9000342 pseudo LOC102019040 guanine nucleotide-binding protein G(s) subunit alpha-like NW_004955410 15378838 15386042 - 102019040 AGCD01010925;AGCD01010926;XR_259907 MODEL 9044426 protein-coding C1rl complement C1r subcomponent like FOUND IN extracellular region (ortholog) NW_004955413 4663643 4670454 - 102012081 AGCD01013623;GBDI01312342;XM_005378857;XM_005378858 XP_005378914;XP_005378915 MODEL 8939030 protein-coding Rnf128 ring finger protein 128 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of cytokine production (ortholog); regulation of protein stability (ortholog); ASSOCIATED WITH Laterality Defects, Autosomal Dominant (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955490 9288482 9309571 - 102023044 AGCD01060307;GBDJ01387080;GBDJ01387081;XM_005404712 XP_005404769 MODEL 8905832 protein-coding Tle3 TLE family member 3, transcriptional corepressor ENCODES a protein that exhibits transcription coactivator activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN fat cell differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Breast Neoplasms (ortholog); rheumatoid arthritis (ortholog); FOUND IN beta-catenin-TCF complex (ortholog); chromatin (ortholog); nucleoplasm (ortholog) NW_004955450 6604915 6645305 + 102011928 AGCD01042523;GBDJ01015569;XM_005393646;XM_005393647;XM_005393648;XM_005393649;XM_005393650;XM_005393651;XM_005393652;XM_005393654;XM_005393655;XM_005393656;XM_005393657;XM_013518996;XM_013518998 XP_005393703;XP_005393704;XP_005393705;XP_005393706;XP_005393707;XP_005393708;XP_005393709;XP_005393711;XP_005393712;XP_005393713;XP_005393714;XP_013374450;XP_013374452 MODEL 10383227 ncrna LOC106150020 uncharacterized LOC106150020 NW_004955460 11158234 11160468 + 106150020 AGCD01048630;GBCQ01163568;XR_001236542 MODEL 8779319 protein-coding Pcsk4 proprotein convertase subtilisin/kexin type 4 INVOLVED IN acrosome reaction (ortholog); binding of sperm to zona pellucida (ortholog); fertilization (ortholog); ASSOCIATED WITH colorectal adenocarcinoma (ortholog); FOUND IN acrosomal membrane (ortholog); acrosomal vesicle (ortholog) NW_004955495 6424426 6460252 + 102015414 AGCD01062081;AGCD01062082;GBDF01181269;XM_013505058 XP_013360512 MODEL 8890650 protein-coding Ppp1r9b protein phosphatase 1 regulatory subunit 9B ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); D2 dopamine receptor binding (ortholog); INVOLVED IN actin filament depolymerization (ortholog); actin filament organization (ortholog); calcium-mediated signaling (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Cognitive Dysfunction (ortholog); Colorectal Neoplasms (ortholog); FOUND IN actin cytoskeleton (ortholog); cortical actin cytoskeleton (ortholog); cytoplasm (ortholog) NW_004955451 11516548 11530263 + 102015685 AGCD01043357;GBDF01098962;XM_005394179 XP_005394236 MODEL 8858267 protein-coding Wipi2 WD repeat domain, phosphoinositide interacting 2 ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagosome maturation (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH INTELLECTUAL DEVELOPMENTAL DISORDER WITH SHORT STATURE AND VARIABLE SKELETAL ANOMALIES (ortholog); FOUND IN autophagosome (ortholog); autophagosome membrane (ortholog); cytosol (ortholog) NW_004955460 10090343 10132724 + 102026612 AGCD01048572;AGCD01048573;GBDF01050079;XM_005397828;XM_005397829;XM_005397830;XM_005397831;XM_005397833;XM_013521133;XM_013521134 XP_005397885;XP_005397886;XP_005397887;XP_005397888;XP_005397890;XP_013376587;XP_013376588 MODEL 8824461 ncrna LOC102029205 uncharacterized LOC102029205 NW_004955427 13025930 13104958 - 102029205 AGCD01027232;AGCD01027233;GBDK01050422;XR_001234410;XR_001234412;XR_261268 MODEL 8852591 protein-coding Lnpep leucyl and cystinyl aminopeptidase ENCODES a protein that exhibits aminopeptidase activity (ortholog); INVOLVED IN negative regulation of cold-induced thermogenesis (ortholog); neuropeptide catabolic process (ortholog); peptide catabolic process (ortholog); PARTICIPATES IN angiotensin IV signaling pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; long term potentiation; ASSOCIATED WITH breast cancer (ortholog); Diabetic Nephropathies (ortholog); Endometrial Neoplasms (ortholog); FOUND IN cell surface (ortholog); cytoplasmic vesicle membrane (ortholog); insulin-responsive compartment (ortholog) NW_004955418 15631703 15718711 - 102009282 AGCD01019109;AGCD01019110;AGCD01019111;GBBH01187295;XM_005382222 XP_005382279 MODEL 8903840 protein-coding LOC102030612 uncharacterized LOC102030612 NW_004955462 10761403 10813202 - 102030612 AGCD01049372;AGCD01049373;GBDF01054628;XM_013521366;XR_263122 XP_013376820 MODEL 8917169 protein-coding Epha4 EPH receptor A4 ENCODES a protein that exhibits DH domain binding (ortholog); ephrin receptor activity (ortholog); ephrin receptor binding (ortholog); INVOLVED IN adherens junction organization (ortholog); adult walking behavior (ortholog); axon guidance (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Alzheimer's disease (ortholog); Brain Hypoxia-Ischemia (ortholog); Brain Injuries (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); axonal growth cone (ortholog) NW_004955453 12099800 12240199 + 102026827 AGCD01044828;AGCD01044829;GBBH01055701;XM_005395504 XP_005395561 MODEL 8945233 protein-coding Slc25a25 solute carrier family 25 member 25 ENCODES a protein that exhibits ATP:phosphate antiporter activity (ortholog); INVOLVED IN adipose tissue development (ortholog); ATP metabolic process (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); High Myopia (ortholog); nephrolithiasis (ortholog); FOUND IN mitochondrion (ortholog) NW_004955419 621445 656172 - 102018095 AGCD01019598;AGCD01019599;AGCD01019600;AGCD01019601;GBDF01304569;XM_005382383;XM_005382385;XM_005382387 XP_005382440;XP_005382442;XP_005382444 MODEL 8808126 pseudo LOC102010986 tubulin polyglutamylase complex subunit 2 pseudogene NW_004955468 4276509 4282049 + 102010986 AGCD01051904 MODEL 8818449 pseudo LOC102026117 sal-like protein 4 NW_004955419 10256718 10300564 + 102026117 AGCD01019940;AGCD01019941;AGCD01019942;AGCD01019943 MODEL 8722336 pseudo LOC102029208 importin subunit alpha-1 pseudogene NW_004955507 1613701 1616336 - 102029208 AGCD01065569 MODEL 8916974 protein-coding Rcsd1 RCSD domain containing 1 ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN cellular hyperosmotic response (ortholog); skeletal muscle contraction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955462 9321624 9383962 - 102022892 AGCD01049337;GBDI01185598;XM_005398223;XM_005398224;XM_013521437 XP_005398280;XP_005398281;XP_013376891 MODEL 8759321 protein-coding Rab39b RAB39B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); myosin V binding (ortholog); INVOLVED IN regulation of autophagy (ortholog); synapse organization (ortholog); vesicle-mediated transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Craniofacial Abnormalities (ortholog); Developmental Disease (ortholog); FOUND IN autolysosome membrane (ortholog); cytoplasmic vesicle membrane (ortholog); Golgi apparatus (ortholog) NW_004955594 424642 431009 + 102023416 AGCD01076427;GBBH01210155;XM_005414644 XP_005414701 MODEL 8833039 protein-coding LOC102012976 guanylate-binding protein 6 NW_004955423 5080353 5100169 - 102012976 AGCD01023554;AGCD01023555;GBCQ01164165;XM_005385101;XM_005385102;XM_005385103 XP_005385158;XP_005385159;XP_005385160 MODEL 8762241 ncrna LOC102015969 uncharacterized LOC102015969 NW_004955497 3508336 3515107 + 102015969 AGCD01062543;GBDF01193122;XR_001231430;XR_264200 MODEL 8764093 protein-coding Prmt5 protein arginine methyltransferase 5 ENCODES a protein that exhibits chromatin binding (ortholog); E-box binding (ortholog); histone H2AR3 methyltransferase activity (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); chromatin remodeling (ortholog); circadian regulation of gene expression (ortholog); PARTICIPATES IN histone modification pathway; homocysteine metabolic pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH asthma (ortholog); Cocaine-Related Disorders (ortholog); diffuse large B-cell lymphoma (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955409 37369507 37378034 + 102028833 AGCD01010511;GBDF01049663;XM_005377107;XM_005377109;XM_005377110 XP_005377164;XP_005377166;XP_005377167 MODEL 8804119 ncrna LOC102005727 uncharacterized LOC102005727 NW_004955424 19528323 19533322 + 102005727 AGCD01024829;GBDI01309346;XR_261083 MODEL 8733570 pseudo LOC102009854 cytochrome c oxidase assembly factor 5 pseudogene NW_004955424 27866525 27870117 - 102009854 AGCD01025137 MODEL 8872349 protein-coding Sox21 SRY-box transcription factor 21 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN hair cycle (ortholog); hair follicle development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog) NW_004955404 15181866 15184317 + 102020079 AGCD01003535;AGCD01003536;GBBH01186966;XM_005374233 XP_005374290 MODEL 10262080 ncrna LOC106150021 uncharacterized LOC106150021 NW_004955460 11121174 11128894 - 106150021 AGCD01048629;XR_001236543;XR_001236544 MODEL 10155441 protein-coding LOC106147181 WAS protein family homolog 1-like NW_004955524 1961089 1962402 - 106147181 AGCD01068788;GBCE01001398;GBDK01011082;XM_013507304 XP_013362758 MODEL 8979794 protein-coding LOC102009822 TRIO and F-actin-binding protein NW_004955413 24125506 24147260 + 102009822 AGCD01014348;AGCD01014349;GBDI01083298;GBDK01078508;XM_005379226 XP_005379283 MODEL 8900477 protein-coding LOC102026469 HLA class II histocompatibility antigen, DP beta 1 chain ENCODES a protein that exhibits peptide antigen binding (ortholog); INVOLVED IN antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); positive regulation of T cell activation (ortholog); positive regulation of T cell proliferation (ortholog); ASSOCIATED WITH allergic asthma (ortholog); angioedema (ortholog); anti-basement membrane glomerulonephritis (ortholog); FOUND IN cell junction (ortholog); cell surface (ortholog); MHC class II protein complex (ortholog) NW_004955437 1655092 1666552 + 102026469 AGCD01034224;GBDF01304769;XM_005389469 XP_005389526 MODEL 8782912 protein-coding Tle4 TLE family member 4, transcriptional corepressor ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN beta-catenin-TCF complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955530 3795336 3932596 - 102014942 AGCD01069963;AGCD01069964;GBCC01033359;GBDF01281043;XM_013507550 XP_013363004 MODEL 8883433 protein-coding Pcsk5 proprotein convertase subtilisin/kexin type 5 ENCODES a protein that exhibits endopeptidase activity (ortholog); endopeptidase inhibitor activity (ortholog); peptidase activity (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); cardiac septum development (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); ASSOCIATED WITH amenorrhea (ortholog); Anorectal Malformations (ortholog); bone development disease (ortholog); FOUND IN extracellular region (ortholog); Golgi apparatus (ortholog); Golgi medial cisterna (ortholog) NW_004955512 2914834 3333440 - 102029890 AGCD01066692;AGCD01066693;AGCD01066694;AGCD01066695;AGCD01066696;AGCD01066697;AGCD01066698;GBCE01148322;GBCQ01140038;XM_005408309;XM_005408310 XP_005408366;XP_005408367 MODEL 9064149 pseudo LOC102027470 alkaline phosphatase, tissue-nonspecific isozyme pseudogene NW_004955446 15797835 15799421 + 102027470 AGCD01040309 MODEL 8770794 ncrna LOC102028799 uncharacterized LOC102028799 NW_004955541 2076257 2079034 - 102028799 AGCD01071400;GBDF01225756;XR_001232131 MODEL 8760289 protein-coding Pet100 PET100 homolog ASSOCIATED WITH mitochondrial complex IV deficiency nuclear type 12 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955563 1628746 1630307 - 102029237 AGCD01074153;GBDF01043194;XM_005413177 XP_005413234 MODEL 8918593 ncrna LOC102021930 uncharacterized LOC102021930 NW_004955403 4854568 4862986 + 102021930 AGCD01001799;GBDF01251789;XR_259151 MODEL 9043330 protein-coding Plppr3 phospholipid phosphatase related 3 NW_004955495 6980213 6990331 + 102020352 AGCD01062108;AGCD01062109;GBDI01386422;XM_013505337 XP_013360791 MODEL 8841785 pseudo LOC102024645 E3 ubiquitin-protein ligase RING2 pseudogene NW_004955455 3212258 3213263 - 102024645 AGCD01045617 MODEL 9046892 protein-coding Rarres2 retinoic acid receptor responder 2 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); cellular response to insulin stimulus (ortholog); embryonic digestive tract development (ortholog); ASSOCIATED WITH essential hypertension (ortholog); glucose intolerance (ortholog); granulosa cell tumor (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog); G protein-coupled receptor complex (ortholog) NW_004955491 4954809 4957724 - 102020453 AGCD01060465;GBDF01126597;XM_005404775;XM_005404776;XM_005404777;XM_005404778 XP_005404832;XP_005404833;XP_005404834;XP_005404835 MODEL 9002129 protein-coding LOC102003956 beta-galactosidase-1-like protein 2 NW_004955412 35115232 35201119 + 102003956 AGCD01013400;AGCD01013401;AGCD01013402;AGCD01013403;AGCD01013404;AGCD01013405;GBDF01221467;XM_005378598 XP_005378655 MODEL 9033711 protein-coding LOC102007180 60S ribosomal protein L31 NW_004955404 47061481 47061923 + 102007180 AGCD01004474;XM_005374211 XP_005374268 MODEL 9029748 protein-coding Rheb Ras homolog, mTORC1 binding ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); GTPase activity (ortholog); INVOLVED IN cellular response to nutrient levels (ortholog); negative regulation of cold-induced thermogenesis (ortholog); positive regulation of oligodendrocyte differentiation (ortholog); PARTICIPATES IN mTOR signaling pathway; Rheb mediated signaling pathway; ASSOCIATED WITH epilepsy (ortholog); Hemimegalencephaly (ortholog); intellectual disability (ortholog); FOUND IN dendrite (ortholog); endomembrane system (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955491 5795040 5833897 - 102003454 AGCD01060503;AGCD01060504;AGCD01060505;GBBH01062052;XM_013504611 XP_013360065 MODEL 8765759 protein-coding Sephs2 selenophosphate synthetase 2 ENCODES a protein that exhibits selenide, water dikinase activity (ortholog); INVOLVED IN L-selenocysteine biosynthetic process (ortholog); selenium compound metabolic process (ortholog); PARTICIPATES IN selenoamino acid metabolic pathway; ASSOCIATED WITH colorectal adenoma (ortholog); colorectal carcinoma (ortholog); FOUND IN cytoplasm (ortholog) NW_004955493 7370869 7373121 - 102014913 AGCD01061184;GBBH01065362;XM_005415295 XP_005415352 MODEL 8784321 protein-coding Epha5 EPH receptor A5 ENCODES a protein that exhibits ephrin receptor activity (ortholog); GPI-linked ephrin receptor activity (ortholog); growth factor binding (ortholog); INVOLVED IN axon guidance (ortholog); axonal fasciculation (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH malignant astrocytoma (ortholog); FOUND IN adherens junction (ortholog); axon (ortholog); cell periphery (ortholog) NW_004955447 7066111 7382046 + 102015063 AGCD01040810;AGCD01040811;AGCD01040812;AGCD01040813;AGCD01040814;AGCD01040815;AGCD01040816;AGCD01040817;AGCD01040818;AGCD01040819;GBCQ01016524;XM_005392842;XM_013518577 XP_005392899;XP_013374031 MODEL 8982294 pseudo LOC102006824 sorting nexin-2 pseudogene NW_004955439 2480520 2482408 - 102006824 AGCD01035651 MODEL 8941054 protein-coding Sgpp1 sphingosine-1-phosphate phosphatase 1 ENCODES a protein that exhibits dihydrosphingosine-1-phosphate phosphatase activity (ortholog); sphingosine-1-phosphate phosphatase activity (ortholog); INVOLVED IN ER to Golgi ceramide transport (ortholog); extrinsic apoptotic signaling pathway (ortholog); intrinsic apoptotic signaling pathway (ortholog); PARTICIPATES IN sphingosine 1-phosphate signaling pathway; FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955466 6075507 6103739 + 102019255 AGCD01050906;AGCD01050907;GBDF01223287;XM_013522009 XP_013377463 MODEL 8780783 protein-coding C1s complement C1s ENCODES a protein that exhibits identical protein binding (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN complement activation, classical pathway (ortholog); glial cell differentiation (ortholog); protein maturation (ortholog); ASSOCIATED WITH autoimmune disease (ortholog); autoimmune hepatitis (ortholog); Complement Component C1s Deficiency (ortholog); FOUND IN cell surface (ortholog); complement component C1 complex (ortholog); extracellular region (ortholog) NW_004955413 4620450 4630860 + 102011424 AGCD01013621;GBDF01017372;XM_005378855 XP_005378912 MODEL 9060585 protein-coding Ptprc protein tyrosine phosphatase receptor type C ENCODES a protein that exhibits ankyrin binding (ortholog); heparan sulfate proteoglycan binding (ortholog); heparin binding (ortholog); INVOLVED IN B cell differentiation (ortholog); B cell proliferation (ortholog); B cell receptor signaling pathway (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Gastro-Enteropancreatic Neuroendocrine Tumor (ortholog); genetic disease (ortholog); FOUND IN bleb (ortholog); cell periphery (ortholog); cell surface (ortholog) NW_004955406 35005577 35127395 + 102002992 AGCD01006516;AGCD01006517;GBDI01007524;XM_013521946;XM_013521949;XM_013521953;XM_013521962;XM_013521970;XM_013521971 XP_013377400;XP_013377403;XP_013377407;XP_013377416;XP_013377424;XP_013377425 MODEL 8929664 protein-coding Rab3a RAB3A, member RAS oncogene family ENCODES a protein that exhibits ATPase activator activity (ortholog); ATPase binding (ortholog); G protein activity (ortholog); INVOLVED IN acrosomal vesicle exocytosis (ortholog); axonogenesis (ortholog); calcium-ion regulated exocytosis (ortholog); PARTICIPATES IN insulin secretion pathway; ASSOCIATED WITH Ependymomas (ortholog); FOUND IN acrosomal vesicle (ortholog); axon (ortholog); endosome (ortholog) NW_004955524 3220108 3224376 + 102019948 AGCD01068867;AGCD01068868;GBDF01156150;XM_005409562 XP_005409619 MODEL 8782177 protein-coding Ppp2ca protein phosphatase 2 catalytic subunit alpha ENCODES a protein that exhibits beta-2 adrenergic receptor binding (ortholog); enzyme binding (ortholog); GABA receptor binding (ortholog); INVOLVED IN cardiac ventricle development (ortholog); cellular response to calcium ion (ortholog); cellular response to cytokine stimulus (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; ataxia telangiectasia-mutated (ATM) signaling pathway; calcium/calmodulin dependent kinase 2 signaling pathway; ASSOCIATED WITH asthma (ortholog); congestive heart failure (ortholog); Experimental Liver Neoplasms (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); chromosome, centromeric region (ortholog) NW_004955408 5435117 5460361 - 102012929 AGCD01008137;AGCD01008138;GBCQ01004946;XM_005376137 XP_005376194 MODEL 8975974 protein-coding Wiz WIZ zinc finger ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); histone methyltransferase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN positive regulation of nuclear cell cycle DNA replication (ortholog); protein stabilization (ortholog); ASSOCIATED WITH atherosclerosis (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955495 7810145 7834908 + 102005610 AGCD01062166;AGCD01062167;AGCD01062168;GBBH01165686;GBDI01322868;XM_013505122 XP_013360576 MODEL 10134233 pseudo LOC106148276 olfactory receptor 50-like NW_004955419 5524931 5525963 - 106148276 AGCD01019818 MODEL 8796600 protein-coding LOC102028149 melanoma-associated antigen B5-like NW_004955598 79753 80850 + 102028149 AGCD01076579;XM_005414742 XP_005414799 MODEL 8786384 protein-coding Lnpk lunapark, ER junction formation factor ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN blood coagulation (ortholog); embryonic digit morphogenesis (ortholog); embryonic forelimb morphogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); NEURODEVELOPMENTAL DISORDER WITH EPILEPSY AND HYPOPLASIA OF THE CORPUS CALLOSUM (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum tubular network membrane (ortholog) NW_004955403 20654961 20728173 + 102012266 AGCD01002171;GBDF01144184;XM_005373417;XM_005373418;XM_013512809;XM_013512812;XM_013512816;XM_013512822 XP_005373474;XP_005373475;XP_013368263;XP_013368266;XP_013368270;XP_013368276 MODEL 8816780 ncrna LOC102019438 uncharacterized LOC102019438 NW_004955441 14696516 14714360 + 102019438 AGCD01037214;AGCD01037215;AGCD01037216;GBDF01130381;XR_262081 MODEL 8889987 pseudo LOC102019041 uncharacterized protein C6orf106 homolog NW_004955464 370613 382428 - 102019041 AGCD01049934;AGCD01049935 MODEL 9049852 protein-coding Samd7 sterile alpha motif domain containing 7 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of gene expression (ortholog); negative regulation of gene expression, epigenetic (ortholog); retinal rod cell development (ortholog); ASSOCIATED WITH macular degeneration (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); PRC1 complex (ortholog) NW_004955420 161353 178768 + 102015524 AGCD01020535;XM_005382960;XM_013513564 XP_005383017;XP_013369018 MODEL 8816057 protein-coding LOC102023660 keratin-associated protein 3-1-like NW_004955451 15422402 15422701 - 102023660 AGCD01043607;XM_005394619 XP_005394676 MODEL 8780291 protein-coding Rnf13 ring finger protein 13 ENCODES a protein that exhibits JUN kinase binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN positive regulation of JNK cascade (ortholog); protein autoubiquitination (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 73 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endosome (ortholog) NW_004955448 1053676 1195612 + 102022343 AGCD01041251;AGCD01041252;AGCD01041253;GBCQ01108869;XM_005393005;XM_013518631 XP_005393062;XP_013374085 MODEL 8778322 pseudo LOC102011831 nuclear receptor-binding factor 2 pseudogene NW_004957988 521 1128 + 102011831 AGCD01081384 MODEL 9019222 trna Trnal-cag transfer RNA leucine (anticodon CAG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955483;NW_004955433;NW_004955433;NW_004955462 363663;14941261;14940923;14719898 363745;14941343;14941005;14719980 -;-;+;+ 101978793 AGCD01031735;AGCD01049456;AGCD01057606 MODEL 8767644 ncrna LOC102005728 uncharacterized LOC102005728 NW_004955424 27059476 27098465 + 102005728 AGCD01025100;GBDF01207365;XR_261110;XR_261111 MODEL 8960211 protein-coding Sox3 SRY-box transcription factor 3 ENCODES a protein that exhibits DNA binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); face development (ortholog); forebrain development (ortholog); ASSOCIATED WITH hydrocephalus (ortholog); hypopituitarism (ortholog); INTELLECTUAL DEVELOPMENTAL DISORDER, X-LINKED, WITH PANHYPOPITUITARISM (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955489 4817753 4819858 + 102021981 AGCD01059916;AGCD01059917;GBDJ01389993;XM_013504464 XP_013359918 MODEL 9038293 protein-coding Snapc1 small nuclear RNA activating complex polypeptide 1 PARTICIPATES IN RNA polymerase III transcription pathway; FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); snRNA-activating protein complex (ortholog) NW_004955466 7953559 7979083 - 102011520 AGCD01050974;AGCD01050975;GBCE01127294;XM_005399162 XP_005399219 MODEL 9063562 pseudo LOC102030618 pre-mRNA-splicing factor RBM22 pseudogene NW_004955412 25517955 25519290 + 102030618 AGCD01013159 MODEL 9063223 ncrna LOC102017891 uncharacterized LOC102017891 NW_004955424 10729774 10746212 - 102017891 AGCD01024526;GBDK01082355;XR_001234189;XR_001234190;XR_001234191;XR_001234192;XR_001234193;XR_001234194;XR_001234195;XR_001234196;XR_001234197 MODEL 8901837 protein-coding Tle5 TLE family member 5, transcriptional modulator ENCODES a protein that exhibits identical protein binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH colon cancer (ortholog); Myocardial Ischemia (ortholog); prostate cancer (ortholog); FOUND IN nucleus (ortholog) NW_004955495 5328299 5336195 + 102011556 AGCD01062000;GBCE01002154;GBDI01010761;XM_013505260 XP_013360714 MODEL 8974136 protein-coding Slc25a26 solute carrier family 25 member 26 ENCODES a protein that exhibits S-adenosyl-L-methionine transmembrane transporter activity (ortholog); S-adenosyl-L-methionine:S-adenosyl-L-homocysteine antiporter activity (ortholog); INVOLVED IN macromolecule methylation (ortholog); mitochondrial S-adenosyl-L-methionine transmembrane transport (ortholog); S-adenosyl-L-methionine transport (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 28 (ortholog); genetic disease (ortholog); Hypokalemic Periodic Paralysis, Type 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955421 21220071 21334330 - 102016605 AGCD01022106;AGCD01022107;GBCQ01094953;XM_013513718;XM_013513719;XM_013513720;XM_013513721;XM_013513722;XM_013513723 XP_013369172;XP_013369173;XP_013369174;XP_013369175;XP_013369176;XP_013369177 MODEL 8970570 protein-coding LOC102027471 protein FAM188B2 NW_004955448 2011970 2031369 - 102027471 AGCD01041273;GBDF01064955;XM_013518585 XP_013374039 MODEL 9045540 pseudo LOC102026120 eukaryotic translation initiation factor 5B-like NW_004955420 16324540 16326940 + 102026120 AGCD01020989 MODEL 8717660 ncrna LOC102028800 uncharacterized LOC102028800 NW_004955438 8518357 8529062 - 102028800 AGCD01035161;GBDF01251003;XR_261921 MODEL 8704952 protein-coding LOC102029210 olfactory receptor 8H1-like NW_004955511 1038327 1039277 + 102029210 AGCD01066354;XM_005407952 XP_005408009 MODEL 8920441 ncrna LOC102012977 uncharacterized LOC102012977 NW_004955495 5748410 5760737 - 102012977 AGCD01062024;AGCD01062025;AGCD01062026;GBCB01002782;XR_001231365 MODEL 9050389 protein-coding Ppp2cb protein phosphatase 2 catalytic subunit beta ENCODES a protein that exhibits phosphoprotein phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN apoptotic mitochondrial changes (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of gene expression (ortholog); PARTICIPATES IN dopamine signaling pathway; phosphatidylinositol 3-kinase-Akt signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; FOUND IN cytoplasm (ortholog); FAR/SIN/STRIPAK complex (ortholog); nucleoplasm (ortholog) NW_004955463 7229717 7249490 - 102009155 AGCD01049725;GBCB01038556;XM_013521563 XP_013377017 MODEL 8808493 protein-coding Plppr4 phospholipid phosphatase related 4 ENCODES a protein that exhibits lipid phosphatase activity (ortholog); lysophosphatidic acid phosphatase activity (ortholog); INVOLVED IN axonogenesis (ortholog); G protein-coupled receptor signaling pathway (ortholog); inner ear development (ortholog); FOUND IN external side of plasma membrane (ortholog); glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog) NW_004955435 4085918 4112207 + 102021275 AGCD01032819;GBDF01303712;XM_005389095 XP_005389152 MODEL 8737112 protein-coding Slco4c1 solute carrier organic anion transporter family member 4C1 ENCODES a protein that exhibits transmembrane transporter activity (ortholog); INVOLVED IN transmembrane transport (ortholog); PARTICIPATES IN multispecific organic anion transporter mediated transport pathway; ASSOCIATED WITH kidney failure (ortholog); FOUND IN basolateral plasma membrane (ortholog) NW_004955418 11587016 11646242 + 102005593 AGCD01019005;AGCD01019006;GBBH01222086;GBCQ01031398;XM_013513034 XP_013368488 MODEL 8789487 protein-coding Trappc2 trafficking protein particle complex subunit 2 ENCODES a protein that exhibits transcription corepressor binding (ortholog); transcription regulator inhibitor activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN positive regulation of gene expression (ortholog); skeletal system development (ortholog); ASSOCIATED WITH genetic disease (ortholog); osteochondrodysplasia (ortholog); spondyloepiphyseal dysplasia congenita (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955519 4470906 4485969 + 102024944 AGCD01067983;GBDK01393820;XM_005409200 XP_005409257 MODEL 39133410 snrna U4 U4 spliceosomal RNA 8822550 ncrna LOC102009857 uncharacterized LOC102009857 NW_004955425 20777011 20788476 - 102009857 AGCD01025762;AGCD01025763;GBDJ01354331;XR_261165;XR_261166 MODEL 8781949 protein-coding LOC102007188 torsin-1A-interacting protein 2 NW_004955406 19092006 19122814 - 102007188 AGCD01006074;GBBH01032401;XM_005374979;XM_005374980;XM_005374981;XM_013521267;XM_013521272;XM_013521279;XM_013521287 XP_005375036;XP_005375037;XP_005375038;XP_013376721;XP_013376726;XP_013376733;XP_013376741 MODEL 8936920 pseudo LOC102008707 retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta pseudogene NW_004955411 1587497 1587967 + 102008707 AGCD01011485;XM_005377918 MODEL 8887450 protein-coding Sepsecs Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase ENCODES a protein that exhibits O-phosphoseryl-tRNA(Sec) selenium transferase activity (ortholog); tRNA binding (ortholog); INVOLVED IN conversion of seryl-tRNAsec to selenocys-tRNAsec (ortholog); selenocysteine incorporation (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); cerebellar hypoplasia (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955443 19759772 19859188 + 102022336 AGCD01038634;AGCD01038635;AGCD01038636;AGCD01038637;GBDF01087437;XM_005392040;XM_005392041;XM_005392042 XP_005392097;XP_005392098;XP_005392099 MODEL 8713878 ncrna LOC102006829 uncharacterized LOC102006829 NW_004955554 382953 396502 + 102006829 AGCD01072948;GBDF01112731;XR_264945 MODEL 8974742 pseudo LOC102011366 protein RUFY3 pseudogene NW_004955442 14907176 14908675 + 102011366 AGCD01037848 MODEL 9017232 protein-coding Psmb1 proteasome 20S subunit beta 1 ENCODES a protein that exhibits structural constituent of proteasome (ortholog); INVOLVED IN proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); NEURODEVELOPMENTAL DISORDER WITH MICROCEPHALY, HYPOTONIA, AND ABSENT LANGUAGE (ortholog); osteoarthritis (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955411 3285610 3304210 + 102015387 AGCD01011545;GBDF01010051;XM_005377618;XM_005377619 XP_005377675;XP_005377676 MODEL 8754963 protein-coding Ptprcap protein tyrosine phosphatase receptor type C associated protein FOUND IN plasma membrane (ortholog) NW_004955422 18041094 18043687 + 102017463 AGCD01022936;GBDK01171715;XM_005384326 XP_005384383 MODEL 9005094 protein-coding Sgpp2 sphingosine-1-phosphate phosphatase 2 ENCODES a protein that exhibits dihydrosphingosine-1-phosphate phosphatase activity (ortholog); sphingosine-1-phosphate phosphatase activity (ortholog); INVOLVED IN regulation of type B pancreatic cell proliferation (ortholog); sphingosine metabolic process (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955453 11244077 11361990 - 102024083 AGCD01044806;AGCD01044807;GBDJ01238332;XM_005395495;XM_005395497 XP_005395552;XP_005395554 MODEL 9001350 protein-coding C2 complement C2 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); INVOLVED IN activation of membrane attack complex (ortholog); complement activation (ortholog); complement activation, classical pathway (ortholog); ASSOCIATED WITH age related macular degeneration 14 (ortholog); Alzheimer's disease (ortholog); atypical hemolytic-uremic syndrome (ortholog); FOUND IN cell surface (ortholog); classical-complement-pathway C3/C5 convertase complex (ortholog); symbiont cell surface (ortholog) NW_004955437 449171 460898 + 102004317 AGCD01034137;GBCE01029038;XM_005389395 XP_005389452 MODEL 10200341 pseudo LOC102010988 Ig heavy chain V-I region 5-like NW_004955470 403274 403787 - 102010988 AGCD01052609 MODEL 8722126 pseudo LOC102024652 putative hydrolase RBBP9 pseudogene NW_004955408 24651679 24656006 + 102024652 AGCD01008621 MODEL 39132853 snorna SNORA73 Small nucleolar RNA SNORA73 family 8989147 protein-coding Lnx1 ligand of numb-protein X 1 ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN synapse maturation (ortholog); ubiquitin-dependent protein catabolic process (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH head and neck squamous cell carcinoma (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955447 17154026 17265067 + 102010749 AGCD01041114;AGCD01041115;AGCD01041116;GBBH01019203;XM_005392901;XM_005392902;XM_005392903;XM_013518520 XP_005392958;XP_005392959;XP_005392960;XP_013373974 MODEL 9055829 pseudo LOC102019042 proteasome assembly chaperone 2 pseudogene NW_004955411 23260964 23261773 + 102019042 AGCD01012104 MODEL 8891478 protein-coding Rars1 arginyl-tRNA synthetase 1 ENCODES a protein that exhibits arginine binding (ortholog); arginine-tRNA ligase activity (ortholog); ATP binding (ortholog); INVOLVED IN arginyl-tRNA aminoacylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); hypomyelinating leukodystrophy 9 (ortholog); leukodystrophy (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955408 21536426 21574683 + 102011958 AGCD01008554;AGCD01008555;GBDI01169815;XM_005376302 XP_005376359 MODEL 10101218 ncrna LOC106150022 uncharacterized LOC106150022 NW_004955460 8179 30699 + 106150022 AGCD01048326;AGCD01048327;AGCD01048328;AGCD01048329;GBDF01187346;XR_001236545;XR_001236546 MODEL 10196422 ncrna LOC106147182 uncharacterized LOC106147182 NW_004955524 323509 327068 - 106147182 AGCD01068675;GBDK01378451;XR_001231957 MODEL 8995761 protein-coding Epha6 EPH receptor A6 PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis NW_004955407 398415 1220542 - 102012926 AGCD01006740;AGCD01006741;AGCD01006742;AGCD01006743;AGCD01006744;AGCD01006745;AGCD01006746;AGCD01006747;AGCD01006748;AGCD01006749;AGCD01006750;AGCD01006751;AGCD01006752;AGCD01006753;AGCD01006754;AGCD01006755;AGCD01006756;AGCD01006757;AGCD01006758;AGCD01006759;AGCD01006760;AGCD01006761;AGCD01006762;AGCD01006763;AGCD01006764;AGCD01006765;AGCD01006766;AGCD01006767;AGCD01006768;AGCD01006769;AGCD01006770;AGCD01006771;AGCD01006772;AGCD01006773;AGCD01006774;AGCD01006775;AGCD01006776;AGCD01006777;AGCD01006778;AGCD01006779;AGCD01006780;AGCD01006781;AGCD01006782;AGCD01006783;AGCD01006784;AGCD01006785;AGCD01006786;GBCB01033975;XM_005375498;XM_005375499;XM_005375500;XM_013503527 XP_005375555;XP_005375556;XP_005375557;XP_013358981 MODEL 8728929 ncrna LOC102009823 uncharacterized LOC102009823 NW_004955468 7108012 7122808 + 102009823 AGCD01051995;AGCD01051996;GBDF01128606;XR_001236944;XR_001236945;XR_263399;XR_263400;XR_263401 MODEL 8790916 ncrna LOC102026470 uncharacterized LOC102026470 NW_004955532 3681945 3685389 + 102026470 AGCD01070294;GBDF01074710;XR_264734 MODEL 15036851 trna Trnal-gag transfer RNA leucine (anticodon GAG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978791 8936851 pseudo LOC102005731 UPF0711 protein C18orf21 pseudogene NW_004955426 5300983 5301585 + 102005731 AGCD01026120 MODEL 9041535 protein-coding Rnf130 ring finger protein 130 ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN programmed cell death (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog) NW_004955408 561719 660775 + 102029050 AGCD01007923;AGCD01007924;AGCD01007925;AY533211;GBBH01034397;XM_005376010 AAS59414;XP_005376067 MODEL 8750727 protein-coding LOC102021933 protein asunder homolog NW_004956483 1036 3435 + 102021933 AGCD01079671;GBCC01016012;XM_013510229 XP_013365683 MODEL 39132946 snorna SNORA74D Small nucleolar RNA SNORA74 8868705 ncrna LOC102008709 uncharacterized LOC102008709 NW_004955412 20482901 20493630 + 102008709 AGCD01013009;GBDF01240677;XR_001232902;XR_001232903;XR_260004 MODEL 8938337 protein-coding Pcsk6 proprotein convertase subtilisin/kexin type 6 ENCODES a protein that exhibits endopeptidase activity (ortholog); heparin binding (ortholog); nerve growth factor binding (ortholog); INVOLVED IN determination of left/right symmetry (ortholog); glycoprotein metabolic process (ortholog); nerve growth factor production (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955416 28184768 28314697 - 102019694 AGCD01017626;GBCB01089002;XM_013512588;XM_013512589 XP_013368042;XP_013368043 MODEL 10119393 pseudo LOC106148277 G patch domain-containing protein 4 pseudogene NW_004955419 5526345 5528979 + 106148277 AGCD01019818 MODEL 8877243 protein-coding Pet117 PET117 homolog ASSOCIATED WITH mitochondrial complex IV deficiency nuclear type 19 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955415 26868442 26871832 + 102013929 AGCD01016610;GBDF01144428;XM_005380920 XP_005380977 MODEL 8810656 protein-coding Snapc2 small nuclear RNA activating complex polypeptide 2 PARTICIPATES IN RNA polymerase III transcription pathway; FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); snRNA-activating protein complex (ortholog) NW_004955563 1345100 1347593 - 102018780 AGCD01074142;GBCE01033036;XM_005413140;XM_005413141;XM_005413142 XP_005413197;XP_005413198;XP_005413199 MODEL 8995815 pseudo LOC102015972 calcyclin-binding protein pseudogene NW_004955506 6547195 6548094 + 102015972 AGCD01065430 MODEL 10218927 protein-coding Rcvrn recoverin ENCODES a protein that exhibits calcium ion binding (ortholog); INVOLVED IN phototransduction (ortholog); regulation of calcium ion transport (ortholog); visual perception (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; visual phototransduction pathway; FOUND IN dendrite (ortholog) NW_004955467 7220237 7236450 + 106146237 AGCD01051431;GBDK01129198;XM_013522133 XP_013377587 MODEL 8751893 protein-coding LOC102019440 olfactory receptor 4L1-like NW_004955550 183997 184935 + 102019440 AGCD01072485;XM_005412127 XP_005412184 MODEL 9025322 protein-coding Rhebl1 RHEB like 1 ENCODES a protein that exhibits GTP binding (ortholog); INVOLVED IN intracellular signal transduction (ortholog); TOR signaling (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955500 7894686 7898035 - 102014584 AGCD01063955;GBDF01077128;XM_005406691 XP_005406748 MODEL 8729168 protein-coding Sgsh N-sulfoglucosamine sulfohydrolase ENCODES a protein that exhibits N-sulfoglucosamine sulfohydrolase activity (ortholog); sulfuric ester hydrolase activity (ortholog); INVOLVED IN determination of adult lifespan (ortholog); glycosaminoglycan catabolic process (ortholog); heparan sulfate proteoglycan catabolic process (ortholog); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); Developmental Disabilities (ortholog); diarrhea (ortholog); FOUND IN lysosomal lumen (ortholog); lysosome (ortholog) NW_004955506 2701901 2713431 + 102019718 AGCD01065301;GBDJ01225391;XM_005407325;XM_005407326;XM_013505991;XM_013505992;XM_013505993;XR_264337;XR_264338 XP_005407382;XP_005407383;XP_013361445;XP_013361446;XP_013361447 MODEL 8748158 protein-coding Slc25a27 solute carrier family 25 member 27 ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); protein homodimerization activity (ortholog); proton transmembrane transporter activity (ortholog); INVOLVED IN inner ear development (ortholog); intracellular triglyceride homeostasis (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH schizophrenia (ortholog); Spinal Cord Injuries (ortholog); FOUND IN apical part of cell (ortholog); mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog) NW_004955437 11497308 11514208 + 102007055 AGCD01034574;GBDF01042740;XM_005389860;XM_005389862 XP_005389917;XP_005389919 MODEL 8719720 protein-coding Ppp2r1a protein phosphatase 2 scaffold subunit Aalpha ENCODES a protein that exhibits phosphoprotein phosphatase activity (ortholog); protein antigen binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN chromosome segregation (ortholog); female meiotic nuclear division (ortholog); meiotic sister chromatid cohesion, centromeric (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 36 (ortholog); Disease Progression (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); chromosome, centromeric region (ortholog) NW_004955558 381794 410485 + 102004524 AGCD01073369;GBBH01030900;XM_005412660 XP_005412717 MODEL 9053667 protein-coding Plppr5 phospholipid phosphatase related 5 INVOLVED IN positive regulation of filopodium assembly (ortholog); positive regulation of neuron projection development (ortholog); FOUND IN plasma membrane (ortholog) NW_004955435 3700217 3818532 - 102020949 AGCD01032802;AGCD01032803;AGCD01032804;AGCD01032805;GBDF01209569;GBDJ01158982;XM_013516396 XP_013371850 MODEL 8866913 ncrna LOC102030624 uncharacterized LOC102030624 NW_004955414 12403950 12591613 - 102030624 AGCD01015098;GBDF01288348;XR_001233074;XR_001233075;XR_260166 MODEL 8819623 protein-coding Wls Wnt ligand secretion mediator ENCODES a protein that exhibits identical protein binding (ortholog); mu-type opioid receptor binding (ortholog); Wnt-protein binding (ortholog); INVOLVED IN anterior/posterior axis specification (ortholog); cementum mineralization (ortholog); exocrine pancreas development (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Zaki syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); dendrite cytoplasm (ortholog) NW_004955423 23374401 23465308 + 102013625 AGCD01024005;GBDK01002213;XM_005385271 XP_005385328 MODEL 8970273 protein-coding Prmt6 protein arginine methyltransferase 6 ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); histone H2AR3 methyltransferase activity (ortholog); INVOLVED IN cellular senescence (ortholog); chromatin remodeling (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN histone modification pathway; homocysteine metabolic pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH cocaine dependence (ortholog); Cocaine-Related Disorders (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955435 10816787 10818047 + 102015441 AGCD01033100;GBCB01051915;XM_005388819 XP_005388876 MODEL 8736642 protein-coding LOC102028151 double-strand break repair protein MRE11A NW_004955605 440396 494066 + 102028151 AGCD01076946;AGCD01076947;AGCD01076948;AGCD01076949;GBBH01025109;GBDI01224120;XM_013510102;XM_013510103;XM_013510104;XR_001232569;XR_001232570;XR_001232571 XP_013365556;XP_013365557;XP_013365558 MODEL 8961284 protein-coding Tle6 TLE family member 6, subcortical maternal complex member ENCODES a protein that exhibits structural constituent of cytoplasmic lattice (ortholog); INVOLVED IN actin filament organization (ortholog); embryonic process involved in female pregnancy (ortholog); endoplasmic reticulum localization (ortholog); ASSOCIATED WITH Oocyte/Zygote/Embryo Maturation Arrest 15 (ortholog); FOUND IN cell cortex (ortholog); cytoplasm (ortholog); cytoplasmic lattice (ortholog) NW_004955495 5367237 5369601 - 102011885 AGCD01062002;GBDF01076043;XM_013505057 XP_013360511 MODEL 9004067 protein-coding Psmb10 proteasome 20S subunit beta 10 INVOLVED IN cell morphogenesis (ortholog); T cell proliferation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); human immunodeficiency virus infectious disease (ortholog); immunodeficiency 121 (ortholog); FOUND IN proteasome complex (ortholog); proteasome core complex (ortholog); spermatoproteasome complex (ortholog) NW_004955484 8777618 8780393 + 102019175 AGCD01058396;GBDJ01009560;XM_005403610;XM_005403611;XM_005403612 XP_005403667;XP_005403668;XP_005403669 MODEL 8882356 pseudo LOC102026122 small nuclear ribonucleoprotein Sm D2 pseudogene NW_004955490 632637 633094 + 102026122 AGCD01060078 MODEL 9017908 pseudo LOC102028806 L-lactate dehydrogenase A chain pseudogene NW_004955443 4648591 4649593 + 102028806 AGCD01038218 MODEL 8786080 protein-coding LOC102027472 leucine-twenty homeobox NW_004955578 1227996 1250414 - 102027472 AGCD01075511;AGCD01075512;AGCD01075513;XM_005414096 XP_005414153 MODEL 8773963 protein-coding LOC102010989 putative olfactory receptor 52P1 NW_004955414 21657267 21659390 + 102010989 AGCD01015425;GBDJ01377827;XM_005380103 XP_005380160 MODEL 8816153 protein-coding LOC102029211 olfactory receptor 5B2-like NW_004955511 3359893 3360825 - 102029211 AGCD01066459;XM_005408031 XP_005408088 MODEL 8727016 pseudo LOC102024656 uracil-DNA glycosylase pseudogene NW_004955462 1209532 1210412 - 102024656 AGCD01049103 MODEL 9010015 protein-coding Pcsk7 proprotein convertase subtilisin/kexin type 7 ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN protein processing (ortholog); ASSOCIATED WITH corpus callosum lipoma (ortholog); hereditary breast ovarian cancer syndrome (ortholog); intellectual disability (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955412 18530378 18553725 - 102024885 AGCD01012944;GBBH01088329;XM_005378198;XM_013511024;XM_013511025 XP_005378255;XP_013366478;XP_013366479 MODEL 39133411 snrna U4 U4 spliceosomal RNA 9058391 protein-coding Slco6a1 solute carrier organic anion transporter family member 6A1 INVOLVED IN thyroid hormone transport (ortholog); transmembrane transport (ortholog); FOUND IN CatSper complex (ortholog); sperm principal piece (ortholog) NW_004955418 11451441 11516950 + 102004816 AGCD01019004;GBDF01005273;XM_005382210;XM_005382211 XP_005382267;XP_005382268 MODEL 8721043 ncrna LOC102009858 uncharacterized LOC102009858 NW_004955426 4649998 4654801 + 102009858 AGCD01026105;GBDF01248724;XR_261189 MODEL 8936878 protein-coding Trappc2l trafficking protein particle complex subunit 2L ASSOCIATED WITH intellectual disability (ortholog); Progressive Early-Onset Encephalopathy with Episodic Rhabdomyolysis (ortholog); FOUND IN cytosol (ortholog); TRAPP complex (ortholog) NW_004955541 2711051 2715458 + 102005968 AGCD01071423;GBDF01224055;XM_005411023;XM_013507981 XP_005411080;XP_013363435 MODEL 8791839 protein-coding LOC102011839 keratin-associated protein 7-1 NW_004955407 30545079 30553536 - 102011839 AGCD01007636;GBDF01259648;XM_005375655 XP_005375712 MODEL 8980364 protein-coding Rab3b RAB3B, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP-dependent protein binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); peptidyl-cysteine methylation (ortholog); positive regulation of dopamine uptake involved in synaptic transmission (ortholog); FOUND IN cytoplasm (ortholog); dopaminergic synapse (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955464 7117908 7177138 + 102023566 AGCD01050053;AGCD01050054;AGCD01050055;GBCQ01044089;XM_005398596;XM_005398597 XP_005398653;XP_005398654 MODEL 8706833 protein-coding LOC102019044 serpin B6 NW_004955465 10220475 10248997 + 102019044 AGCD01050504;AGCD01050505;AGCD01050506;GBCE01029516;XM_005398908;XM_005398909 XP_005398965;XP_005398966 MODEL 10362905 ncrna LOC106150023 uncharacterized LOC106150023 NW_004955461 12937023 12973608 + 106150023 AGCD01049027;GBCE01106320;XR_001236547 MODEL 8967301 protein-coding LOC102006830 hemoglobin subunit alpha NW_004955442 17005234 17006044 - 102006830 AGCD01037931;GBBH01003742;XM_005391672 XP_005391729 MODEL 8771415 protein-coding Septin1 septin 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN meiotic metaphase chromosome alignment (ortholog); spindle assembly involved in female meiosis (ortholog); FOUND IN meiotic spindle (ortholog); midbody (ortholog) NW_004955493 7304472 7309022 - 102013424 AGCD01061177;AGCD01061178;GBDJ01178079;XM_005405254;XM_005405255;XM_005405257;XM_013504780 XP_005405311;XP_005405312;XP_005405314;XP_013360234 MODEL 39131363 protein-coding C20orf204 chromosome 20 open reading frame 204 8778956 trna Trnal-uaa transfer RNA leucine (anticodon UAA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955465;NW_004955436;NW_004955465 13142581;16282643;13312190 13142663;16282725;13312272 -;-;- 101978788 AGCD01033911;AGCD01050590;AGCD01050597 MODEL 8935556 protein-coding LOC102003957 asialoglycoprotein receptor 2 NW_004955467 9753634 9773834 + 102003957 AGCD01051524;GBDJ01193720;XM_005399561;XM_005399562;XM_005399563;XM_005399564;XM_005399565;XM_005399566;XM_005399567;XM_013522259;XM_013522260;XM_013522261;XM_013522262;XM_013522263;XM_013522264;XM_013522265 XP_005399618;XP_005399619;XP_005399620;XP_005399621;XP_005399622;XP_005399623;XP_005399624;XP_013377713;XP_013377714;XP_013377715;XP_013377716;XP_013377717;XP_013377718;XP_013377719 MODEL 8892552 pseudo LOC102023661 TIP41-like protein NW_004955404 27433979 27434834 - 102023661 AGCD01003930 MODEL 8730526 protein-coding Samd8 sterile alpha motif domain containing 8 ENCODES a protein that exhibits ceramide phosphoethanolamine synthase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); ceramide phosphoethanolamine biosynthetic process (ortholog); regulation of ceramide biosynthetic process (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955437 16900756 16969042 - 102028336 AGCD01034718;AGCD01034719;AGCD01034720;AGCD01034721;AGCD01034722;AGCD01034723;GBDF01153789;GBDI01243361;XM_005389922 XP_005389979 MODEL 8720878 protein-coding Pex1 peroxisomal biogenesis factor 1 ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); membrane protein dislocase activity (ortholog); INVOLVED IN microtubule-based peroxisome localization (ortholog); peroxisome organization (ortholog); protein import into peroxisome matrix (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); epilepsy (ortholog); fundus dystrophy (ortholog); FOUND IN ATPase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955432 9418480 9461507 - 102005290 AGCD01030906;GBDI01218587;XM_005388022;XM_005388023;XM_013515937 XP_005388079;XP_005388080;XP_013371391 MODEL 8934243 protein-coding LOC102019442 zinc transporter 1-like NW_004955442 19617356 19619919 - 102019442 AGCD01038070;AGCD01038071;GBDF01252767;XM_013518023 XP_013373477 MODEL 8846350 pseudo LOC102007193 keratin-associated protein 12-1-like NW_004955407 41612826 41613140 + 102007193 AGCD01007872 MODEL 8765089 protein-coding Rhex regulator of hemoglobinization and erythroid cell expansion ENCODES a protein that exhibits erythropoietin receptor binding (ortholog); INVOLVED IN cellular response to erythropoietin (ortholog); erythropoietin-mediated signaling pathway (ortholog); positive regulation of erythrocyte differentiation (ortholog); FOUND IN plasma membrane (ortholog) NW_004955406 41687577 41703282 + 102016446 AGCD01006688;GBDK01309194;XM_005375383;XM_005375384;XM_013523064 XP_005375440;XP_005375441;XP_013378518 MODEL 10076480 protein-coding LOC106147183 zinc finger protein 829-like NW_004955524 346930 348430 - 106147183 AGCD01068675;XM_013507305 XP_013362759 MODEL 8721272 pseudo LOC102017894 protein FAM69B-like NW_004955425 7507821 7533856 + 102017894 AGCD01025387 MODEL 9023876 protein-coding Rars2 arginyl-tRNA synthetase 2, mitochondrial ENCODES a protein that exhibits arginine-tRNA ligase activity (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway; ASSOCIATED WITH cerebellar hypoplasia (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955411 14470479 14527895 - 102028171 AGCD01011920;AGCD01011921;GBDJ01276669;XM_005377731 XP_005377788 MODEL 8745862 protein-coding LOC102026471 E3 ubiquitin-protein ligase RNF13-like NW_004955534 2920350 2923814 + 102026471 AGCD01070555;XM_005410480 XP_005410537 MODEL 9045935 ncrna LOC102009827 uncharacterized LOC102009827 NW_004955414 26483702 26488503 - 102009827 AGCD01015645;GBCB01079189;XR_260198 MODEL 9041051 protein-coding Rnf133 ring finger protein 133 INVOLVED IN protein autoubiquitination (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955479 4318513 4319974 - 102011443 AGCD01056320;GBDF01046816;XM_005402322 XP_005402379 MODEL 8791845 protein-coding Epha7 EPH receptor A7 ENCODES a protein that exhibits axon guidance receptor activity (ortholog); chemorepellent activity (ortholog); ephrin receptor binding (ortholog); INVOLVED IN brain development (ortholog); branching morphogenesis of a nerve (ortholog); ephrin receptor signaling pathway (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH Drug-Related Side Effects and Adverse Reactions (ortholog); Hemorrhage (ortholog); lung small cell carcinoma (ortholog); FOUND IN dendrite (ortholog); glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog) NW_004955411 19652146 19815418 - 102012295 AGCD01012039;AGCD01012040;AGCD01012041;AGCD01012042;GBCQ01095584;XM_005377770;XM_005377771;XM_005377772;XM_005377773 XP_005377827;XP_005377828;XP_005377829;XP_005377830 MODEL 8829762 protein-coding Plrg1 pleiotropic regulator 1 INVOLVED IN mRNA splicing, via spliceosome (ortholog); positive regulation of G1/S transition of mitotic cell cycle (ortholog); protein localization to nucleus (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN catalytic step 2 spliceosome (ortholog); DNA replication factor A complex (ortholog); fibrillar center (ortholog) NW_004955471 8764465 8777396 - 102007988 AGCD01053193;AGCD01053194;GBDJ01085184;XM_005400930 XP_005400987 MODEL 39131955 snorna SNORA75 Small nucleolar RNA SNORA75 8863175 protein-coding Ptprd protein tyrosine phosphatase receptor type D ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); heterophilic cell-cell adhesion (ortholog); ASSOCIATED WITH attention deficit hyperactivity disorder (ortholog); Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); FOUND IN glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); presynaptic membrane (ortholog) NW_004955434 12033825 14132636 - 102009647 AGCD01032383;AGCD01032384;AGCD01032385;AGCD01032386;AGCD01032387;AGCD01032388;AGCD01032389;AGCD01032390;AGCD01032391;AGCD01032392;AGCD01032393;AGCD01032394;AGCD01032395;AGCD01032396;AGCD01032397;AGCD01032398;AGCD01032399;AGCD01032400;AGCD01032401;AGCD01032402;AGCD01032403;AGCD01032404;AGCD01032405;AGCD01032406;AGCD01032407;AGCD01032408;AGCD01032409;AGCD01032410;AGCD01032411;AGCD01032412;AGCD01032413;AGCD01032414;AGCD01032415;AGCD01032416;AGCD01032417;AGCD01032418;GBBH01036507;XM_013516328;XM_013516329;XM_013516330;XM_013516331;XM_013516332;XM_013516333;XM_013516334;XM_013516335;XM_013516336;XM_013516337 XP_013371782;XP_013371783;XP_013371784;XP_013371785;XP_013371786;XP_013371787;XP_013371788;XP_013371789;XP_013371790;XP_013371791 MODEL 8784437 protein-coding Ppp2r1b protein phosphatase 2 scaffold subunit Abeta INVOLVED IN apoptotic process involved in morphogenesis (ortholog); positive regulation of extrinsic apoptotic signaling pathway in absence of ligand (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH lung cancer (ortholog); lung carcinoma (ortholog); Lung Neoplasms (ortholog); FOUND IN glutamatergic synapse (ortholog); membrane raft (ortholog); synapse (ortholog) NW_004955412 13458078 13494583 - 102015938 AGCD01012836;AGCD01012837;AGCD01012838;GBDF01004755;XM_013511030;XM_013511031;XM_013511032;XM_013511033;XM_013511034;XM_013511035;XM_013511036;XM_013511037;XM_013511038 XP_013366484;XP_013366485;XP_013366486;XP_013366487;XP_013366488;XP_013366489;XP_013366490;XP_013366491;XP_013366492 MODEL 8909018 ncrna LOC102012980 uncharacterized LOC102012980 NW_004955426 6108020 6117151 - 102012980 AGCD01026144;GBCE01090878;XR_001234326;XR_261191 MODEL 8921944 protein-coding Snapc3 small nuclear RNA activating complex polypeptide 3 PARTICIPATES IN RNA polymerase III transcription pathway; FOUND IN nucleoplasm (ortholog); snRNA-activating protein complex (ortholog) NW_004955434 18275301 18310682 + 102017154 AGCD01032561;AGCD01032562;GBBH01208062;GBCE01115541;XM_013516308;XR_001234798 XP_013371762 MODEL 9047481 protein-coding Rd3 RD3 regulator of GUCY2D INVOLVED IN negative regulation of guanylate cyclase activity (ortholog); protein transport (ortholog); retina development in camera-type eye (ortholog); ASSOCIATED WITH Eye Abnormalities (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN cone photoreceptor outer segment (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955489 896964 903855 + 102013728 AGCD01059820;GBDK01188607;XM_005404502 XP_005404559 MODEL 9018215 protein-coding Slf1 SMC5/6 complex localization factor 1 ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN DNA damage response (ortholog); positive regulation of double-strand break repair (ortholog); positive regulation of maintenance of mitotic sister chromatid cohesion (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nuclear inclusion body (ortholog) NW_004955418 17756610 17818552 - 102019915 AGCD01019157;AGCD01019158;GBDK01187313;XM_005382259;XM_005382260;XM_005382261;XM_013512986 XP_005382316;XP_005382317;XP_005382318;XP_013368440 MODEL 8807159 protein-coding LOC102030626 protocadherin beta-18 NW_004955415 12577837 12590000 - 102030626 AGCD01016202;AGCD01016203;AGCD01016204;GBDJ01244077;XM_005381126 XP_005381183 MODEL 8926674 protein-coding Prmt7 protein arginine methyltransferase 7 ENCODES a protein that exhibits histone binding (ortholog); histone H4 methyltransferase activity (ortholog); histone H4R3 methyltransferase activity (ortholog); INVOLVED IN genomic imprinting (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN histone modification pathway; methionine cycle/metabolic pathway; ASSOCIATED WITH acanthosis nigricans (ortholog); brachydactyly (ortholog); Dwarfism (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955484 8299427 8352465 - 102009842 AGCD01058374;AGCD01058375;AGCD01058376;XM_005403584;XM_013503916;XM_013503917 XP_005403641;XP_013359370;XP_013359371 MODEL 9043643 protein-coding Lnx2 ligand of numb-protein X 2 ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN neural precursor cell proliferation (ortholog); neuron differentiation (ortholog); FOUND IN plasma membrane (ortholog) NW_004955497 6948329 6989455 - 102003984 AGCD01062651;GBCC01024593;XM_005406356 XP_005406413 MODEL 39131444 protein-coding PSMB11 proteasome subunit beta 11 8947445 protein-coding Sgsm1 small G protein signaling modulator 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle membrane (ortholog); cytosol (ortholog) NW_004955455 258472 343079 - 102011400 AGCD01045555;GBDF01281537;XM_005396135;XM_005396136 XP_005396192;XP_005396193 MODEL 8942557 protein-coding Slc25a28 solute carrier family 25 member 28 ENCODES a protein that exhibits ferrous iron transmembrane transporter activity (ortholog); PARTICIPATES IN iron uptake pathway; FOUND IN mitochondrion (ortholog) NW_004955507 5520915 5530615 - 102005067 AGCD01065678;GBDJ01079892;GBDK01080161;XM_013506230 XP_013361684 MODEL 8954196 protein-coding LOC102029214 olfactory receptor 5D18-like NW_004955511 495952 496893 + 102029214 AGCD01066332;XM_005408194 XP_005408251 MODEL 9035689 protein-coding LOC102023662 lysozyme C NW_004955405 9664119 9670523 + 102023662 AGCD01004787;GBBH01001416;XM_005374298 XP_005374355 MODEL 8923639 protein-coding LOC102021936 Ig-like V-type domain-containing protein FAM187A NW_004955451 17693409 17695551 + 102021936 AGCD01043767;GBCE01037287;XM_005394557 XP_005394614 MODEL 10299382 protein-coding LOC106148278 translation initiation factor IF-2-like NW_004955419 6731945 6733526 + 106148278 AGCD01019862;XM_013513103 XP_013368557 MODEL 8962069 ncrna LOC102015974 uncharacterized LOC102015974 NW_004955430 18806239 18827763 + 102015974 AGCD01029701;GBDF01251071;XR_261430 MODEL 39131435 protein-coding C21orf62 chromosome 21 open reading frame 62 39132850 snorna SNORA73 Small nucleolar RNA SNORA73 family 9012361 trna Trnal-uag transfer RNA leucine (anticodon UAG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955467;NW_004955550 8841723;1420231 8841804;1420312 +;+ 101978792 AGCD01051475;AGCD01072566 MODEL 8744823 protein-coding Septin10 septin 10 ASSOCIATED WITH COVID-19 (ortholog); FOUND IN actin cytoskeleton (ortholog); microtubule cytoskeleton (ortholog); sperm annulus (ortholog) NW_004955470 12647145 12697616 - 102011648 AGCD01052935;AGCD01052936;GBCQ01097624;GBCQ01097637;XM_005415243;XM_013522808;XM_013522809 XP_005415300;XP_013378262;XP_013378263 MODEL 8997016 pseudo LOC102003958 epithelial cell adhesion molecule pseudogene NW_004955413 7190271 7195075 - 102003958 AGCD01013804 MODEL 9064150 ncrna LOC102028152 uncharacterized LOC102028152 NW_004955403 18520665 18523578 + 102028152 AGCD01002100;GBCB01130207;XR_259184 MODEL 8764049 pseudo LOC102026123 serine/threonine-protein phosphatase 2A catalytic subunit beta isoform pseudogene NW_004955421 21336327 21339945 + 102026123 AGCD01022107 MODEL 8715171 pseudo LOC102028807 hematological and neurological expressed 1 protein pseudogene NW_004955444 9014695 9015132 + 102028807 AGCD01038953 MODEL 8906302 protein-coding Wnk1 WNK lysine deficient protein kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); molecular condensate scaffold activity (ortholog); INVOLVED IN cell volume homeostasis (ortholog); cellular hyperosmotic response (ortholog); cellular response to calcium ion (ortholog); PARTICIPATES IN Erk5 MAPK signaling pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); genetic disease (ortholog); hereditary sensory and autonomic neuropathy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); GABA-ergic synapse (ortholog) NW_004955454 6228492 6358690 - 102007507 AGCD01045225;AGCD01045226;AGCD01045227;AGCD01045228;AGCD01045229;AGCD01045230;GBDI01065217;XM_005395988;XM_005395991;XM_005395992;XM_005395993;XM_005395994;XM_005395996;XM_005395997;XM_005395999;XM_005396003;XM_013520148;XM_013520149;XM_013520150;XM_013520151;XM_013520152;XM_013520153;XM_013520155;XM_013520156;XM_013520157 XP_005396045;XP_005396048;XP_005396049;XP_005396050;XP_005396051;XP_005396053;XP_005396054;XP_005396056;XP_005396060;XP_013375602;XP_013375603;XP_013375604;XP_013375605;XP_013375606;XP_013375607;XP_013375609;XP_013375610;XP_013375611 MODEL 8880856 protein-coding LOC102027476 melanoma-associated antigen B5-like NW_004955598 8 3637 + 102027476 AGCD01076576;AGCD01076577;XM_005414740 XP_005414797 MODEL 9004579 pseudo LOC102011370 olfactory receptor 7G1-like NW_004955563 374406 376655 + 102011370 AGCD01074064 MODEL 8972170 pseudo LOC102005734 deoxynucleotidyltransferase terminal-interacting protein 2 pseudogene NW_004955428 1136198 1138064 + 102005734 AGCD01027605 MODEL 39133413 snrna U4 U4 spliceosomal RNA 8887471 protein-coding Pcsk9 proprotein convertase subtilisin/kexin type 9 ENCODES a protein that exhibits apolipoprotein binding (ortholog); apolipoprotein receptor binding (ortholog); endopeptidase activity (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); cellular response to starvation (ortholog); cholesterol homeostasis (ortholog); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); coronary artery disease (ortholog); Coronary Disease (ortholog); FOUND IN cell surface (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); cytoplasm (ortholog) NW_004955464 4424583 4439805 - 102023126 AGCD01049990;AGCD01049991;GBDJ01046754;XM_005398505 XP_005398562 MODEL 8790738 ncrna LOC102019045 uncharacterized LOC102019045 NW_004955466 9453241 9501042 - 102019045 AGCD01051041;AGCD01051042;GBCQ01154689;XR_001236769 MODEL 8937257 protein-coding Trappc3 trafficking protein particle complex subunit 3 INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); FOUND IN cytosol (ortholog); Golgi membrane (ortholog); TRAPP complex (ortholog) NW_004955452 14160612 14172896 - 102027140 AGCD01044453;AGCD01044454;GBCC01015358;XM_005395172;XM_005395173;XM_005395174;XM_005395175 XP_005395229;XP_005395230;XP_005395231;XP_005395232 MODEL 10320712 ncrna LOC106150024 uncharacterized LOC106150024 NW_004955461 8457281 8506691 - 106150024 AGCD01048928;AGCD01048929;XR_001236548;XR_001236549 MODEL 8875990 protein-coding Rhno1 RAD9-HUS1-RAD1 interacting nuclear orphan 1 ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); INVOLVED IN cellular response to ionizing radiation (ortholog); cellular response to UV (ortholog); DNA damage checkpoint signaling (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); nucleus (ortholog) NW_004955429 18408121 18415832 + 102024260 AGCD01028902;AGCD01028903;GBDF01047104;XM_005387125;XM_005387126;XM_005387127;XM_005387128;XM_013515475;XR_001234519;XR_001234520 XP_005387182;XP_005387183;XP_005387184;XP_005387185;XP_013370929 MODEL 8736581 protein-coding Psmb11 proteasome subunit beta 11 ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN CD8-positive, alpha-beta T cell differentiation (ortholog); proteolysis (ortholog); T cell differentiation in thymus (ortholog); FOUND IN proteasome core complex (ortholog) NW_004955409 37260080 37260866 - 102020775 AGCD01010501;GBDI01282560;GBDI01342134;XM_013510447 XP_013365901 MODEL 8986048 protein-coding LOC102006831 uncharacterized LOC102006831 NW_004955442 12111453 12371491 - 102006831 AGCD01037728;AGCD01037729;AGCD01037730;XM_005391851 XP_005391908 MODEL 8754573 protein-coding LOC102026472 zinc finger protein ZFP69 NW_004955537 298776 323238 + 102026472 AGCD01070860;AGCD01070861;GBDK01012501;XM_005410557;XM_005410560;XM_013507795;XM_013507796;XM_013507797;XM_013507798;XM_013507799 XP_005410614;XP_005410617;XP_013363249;XP_013363250;XP_013363251;XP_013363252;XP_013363253 MODEL 8823950 protein-coding Rasa1 RAS p21 protein activator 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); GTPase binding (ortholog); kinase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); angiogenesis (ortholog); blood vessel morphogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; insulin signaling pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); arteriovenous malformation (ortholog); basal cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear membrane (ortholog) NW_004955418 23807740 23897699 - 102008221 AGCD01019313;AGCD01019314;GBDI01008697;GBDK01184895;XM_005382300 XP_005382357 MODEL 8952691 protein-coding Tle7 TLE family member 7 NW_004955484 4138324 4150092 - 102009184 AGCD01058202;AGCD01058203;GBDF01074192;GBDJ01410386;NM_001370855;XM_013503981 NP_001357784;XP_013359435 VALIDATED 8798443 protein-coding Epha8 EPH receptor A8 ENCODES a protein that exhibits ephrin receptor activity (ortholog); GPI-linked ephrin receptor activity (ortholog); growth factor binding (ortholog); INVOLVED IN axon guidance (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); ephrin receptor signaling pathway (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH High Myopia (ortholog); FOUND IN neuron projection (ortholog); plasma membrane (ortholog) NW_004955452 2702277 2729161 + 102012603 AGCD01043903;GBDF01242136;XM_013519449;XR_001236014 XP_013374903 MODEL 8802521 protein-coding Ppp2r2a protein phosphatase 2 regulatory subunit Balpha ENCODES a protein that exhibits enzyme-substrate adaptor activity (ortholog); phosphoprotein phosphatase activity (ortholog); protein phosphatase 2A binding (ortholog); INVOLVED IN protein dephosphorylation (ortholog); regulation of chromosome segregation (ortholog); response to morphine (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Chromosomal Instability (ortholog); Emphysema (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN glutamatergic synapse (ortholog); protein phosphatase type 2A complex (ortholog); protein serine/threonine phosphatase complex (ortholog) NW_004955403 49042188 49113743 + 102026933 AGCD01002935;GBCB01025310;GBDI01135179;XM_013514116 XP_013369570 MODEL 8925102 protein-coding Rd3l RD3 like NW_004955538 2678458 2680078 - 102020161 AGCD01071136;GBDF01108545;XM_005410817 XP_005410874 MODEL 9062331 protein-coding Ptpre protein tyrosine phosphatase receptor type E ENCODES a protein that exhibits identical protein binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN cell surface receptor protein tyrosine phosphatase signaling pathway (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); regulation of mast cell activation (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955477 5688936 5838264 + 102014893 AGCD01055598;GBDF01075904;XM_005402013;XM_005402014;XM_005402018;XM_005402019;XM_013503075;XM_013503076;XM_013503077;XM_013503078 XP_005402070;XP_005402071;XP_005402075;XP_005402076;XP_013358529;XP_013358530;XP_013358531;XP_013358532 MODEL 8858448 protein-coding Slf2 SMC5/6 complex localization factor 2 ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN DNA damage response (ortholog); positive regulation of double-strand break repair (ortholog); positive regulation of maintenance of mitotic sister chromatid cohesion (ortholog); ASSOCIATED WITH Atelis syndrome 1 (ortholog); genetic disease (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955485 9221419 9269308 - 102006135 AGCD01058753;AGCD01058754;GBCB01074847;GBCQ01010494;XM_013504054 XP_013359508 MODEL 9061448 ncrna LOC102009859 uncharacterized LOC102009859 NW_004955427 7919836 7924927 + 102009859 AGCD01027059;GBDF01303674;XR_001234333;XR_001234334 MODEL 8955948 protein-coding LOC102019444 splicing factor, arginine/serine-rich 19 NW_004955559 1235878 1243218 - 102019444 AGCD01073638;GBBH01142756;GBDF01090351;XM_013508983 XP_013364437 MODEL 8726721 ncrna LOC102011840 uncharacterized LOC102011840 NW_004955407 35818286 35827944 - 102011840 AGCD01007751;GBCQ01178585;XR_001231235;XR_001231237;XR_001231238;XR_259614 MODEL 10079556 ncrna LOC106147184 uncharacterized LOC106147184 NW_004955524 2942027 2943839 - 106147184 AGCD01068845;XR_001231958 MODEL 8861721 pseudo LOC102017895 protein kinase C iota type pseudogene NW_004955501 2865479 2868071 - 102017895 AGCD01064096 MODEL 9003884 protein-coding Rab3c RAB3C, member RAS oncogene family ENCODES a protein that exhibits GTP-dependent protein binding (ortholog); GTPase activity (ortholog); myosin V binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); regulation of exocytosis (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog); synaptic vesicle (ortholog); synaptic vesicle membrane (ortholog) NW_004955446 9335298 9577919 - 102009894 AGCD01040159;AGCD01040160;AGCD01040161;GBCQ01023934;XM_005392675;XM_013518391;XM_013518392 XP_005392732;XP_013373845;XP_013373846 MODEL 9022768 protein-coding LOC102009828 olfactory receptor 52N2-like NW_004955414 21765507 21766469 + 102009828 AGCD01015432;XM_005380503 XP_005380560 MODEL 8978481 protein-coding Rnf135 ring finger protein 135 ENCODES a protein that exhibits identical protein binding (ortholog); ribonucleoprotein complex binding (ortholog); RIG-I binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); free ubiquitin chain polymerization (ortholog); positive regulation of interferon-beta production (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); chromosome 17q11.2 deletion syndrome (ortholog); Growth Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); ribonucleoprotein complex (ortholog) NW_004955481 7111760 7122800 + 102011661 AGCD01057054;GBBH01113146;GBCQ01000813;XM_005402930;XM_013503524;XM_013503526 XP_005402987;XP_013358978;XP_013358980 MODEL 8839329 protein-coding LOC102023665 proline-rich protein 2-like NW_004955407 41880453 41882002 - 102023665 AGCD01007883;AGCD01007884;GBCQ01112740;XM_005375993 XP_005376050 MODEL 8913414 protein-coding Pls1 plastin 1 INVOLVED IN auditory receptor cell stereocilium organization (ortholog); intestinal D-glucose absorption (ortholog); microvillus assembly (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 76 (ortholog); genetic disease (ortholog); FOUND IN brush border (ortholog); cytoplasm (ortholog); stereocilium (ortholog) NW_004955508 3215304 3324240 - 102012672 AGCD01065806;GBDI01000738;XM_005407737;XM_013506262 XP_005407794;XP_013361716 MODEL 10231865 protein-coding LOC106150025 translation initiation factor IF-2-like NW_004955461 8035952 8076473 + 106150025 AGCD01048925;GBCB01018848;XM_013521304 XP_013376758 MODEL 8936517 protein-coding C2cd2 C2 calcium dependent domain containing 2 NW_004955407 39627435 39665156 + 102021097 AGCD01007832;GBBH01214687;GBDJ01064517;XM_013505230 XP_013360684 MODEL 8784932 ncrna LOC102030628 uncharacterized LOC102030628 NW_004955416 13428674 13433527 - 102030628 AGCD01017223;GBDF01144247;XR_260381 MODEL 9038917 pseudo LOC102007194 metal-response element-binding transcription factor 2-like NW_004955407 20859491 20861983 - 102007194 AGCD01007345 MODEL 9016505 protein-coding Pex10 peroxisomal biogenesis factor 10 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); peroxisome organization (ortholog); protein import into peroxisome matrix (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); genetic disease (ortholog); infantile Refsum disease (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog); ubiquitin ligase complex (ortholog) NW_004955486 8785199 8801914 + 102008421 AGCD01059156;GBDF01083507;XM_005404172;XM_013504178;XM_013504179 XP_005404229;XP_013359632;XP_013359633 MODEL 8727936 protein-coding Prmt8 protein arginine methyltransferase 8 ENCODES a protein that exhibits enzyme binding (ortholog); histone H4 methyltransferase activity (ortholog); identical protein binding (ortholog); INVOLVED IN regulation of modification of postsynaptic actin cytoskeleton (ortholog); ASSOCIATED WITH Cocaine-Related Disorders (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); glutamatergic synapse (ortholog); nucleus (ortholog) NW_004955413 1323436 1409188 + 102025449 AGCD01013520;AGCD01013521;GBDF01034290;XM_005378717 XP_005378774 MODEL 9065638 protein-coding LOC102008710 olfactory receptor 8B4-like NW_004955412 25399638 25400570 - 102008710 AGCD01013151;XM_005378422 XP_005378479 MODEL 8701261 protein-coding Septin11 septin 11 INVOLVED IN regulation of synapse organization (ortholog); ASSOCIATED WITH autosomal recessive cerebellar ataxia (ortholog); methylmalonic acidemia (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955433 1606246 1691819 + 102015657 AGCD01031365;AGCD01031366;GBCE01031455;XM_005388189;XM_005388190;XM_013516164;XM_013516165;XM_013516166;XR_001234733;XR_001234734 XP_005388246;XP_005388247;XP_013371618;XP_013371619;XP_013371620 MODEL 9061860 protein-coding Rdh10 retinol dehydrogenase 10 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); bud elongation involved in lung branching (ortholog); ear development (ortholog); PARTICIPATES IN retinoic acid metabolic pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH Craniofacial Abnormalities (ortholog); Experimental Liver Cirrhosis (ortholog); Fetal Death (ortholog); FOUND IN cytoplasm (ortholog); lipid droplet (ortholog); membrane (ortholog) NW_004955444 6878722 6909421 - 102024388 AGCD01038876;GBDI01121275;GBDJ01318433;XM_005392094 XP_005392151 MODEL 8825690 protein-coding Sgsm2 small G protein signaling modulator 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN late endosome to Golgi transport (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); melanosome (ortholog) NW_004955481 871719 907326 - 102010902 AGCD01056816;GBDF01081055;XM_005402592;XM_005402593;XM_005402594 XP_005402649;XP_005402650;XP_005402651 MODEL 8777213 protein-coding Tlk1 tousled like kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN intracellular protein transport (ortholog); intracellular signal transduction (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Neoplasm Recurrence, Local (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955449 3694624 3840468 + 102022033 AGCD01041863;AGCD01041864;AGCD01041865;AGCD01041866;AGCD01041867;AGCD01041868;GBDK01190119;XM_005393240 XP_005393297 MODEL 39133415 snrna U4 U4 spliceosomal RNA 39131954 snorna SNORA75 Small nucleolar RNA SNORA75 8808089 protein-coding Wnk2 WNK lysine deficient protein kinase 2 INVOLVED IN monoatomic ion homeostasis (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); ASSOCIATED WITH genetic disease (ortholog); transient cerebral ischemia (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog) NW_004955515 4730647 4852920 - 102010615 AGCD01067330;AGCD01067331;GBCB01002306;GBDK01219428;XM_013506886 XP_013362340 MODEL 10271816 pseudo LOC106148279 olfactory receptor 13D1-like NW_004955419 21802431 21803205 - 106148279 AGCD01020283 MODEL 8968218 ncrna LOC102012211 uncharacterized LOC102012211 NW_004955422 23635752 23644682 - 102012211 AGCD01023199;GBCQ01013438;XR_260906 MODEL 8948405 protein-coding LOC102021937 alcohol dehydrogenase 4 NW_004955405 9357258 9377324 - 102021937 AGCD01004771;GBDI01329017;XM_005374294 XP_005374351 MODEL 8923859 protein-coding Samd9 sterile alpha motif domain containing 9 INVOLVED IN endosomal vesicle fusion (ortholog); ASSOCIATED WITH disease by infectious agent (ortholog); Fetal Growth Retardation (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955432 9957521 9972622 - 102006812 AGCD01030920;GBDK01359400;XM_005388025;XM_013516068;XM_013516069;XM_013516070;XM_013516071 XP_005388082;XP_013371522;XP_013371523;XP_013371524;XP_013371525 MODEL 8831386 protein-coding Rho rhodopsin ENCODES a protein that exhibits retinal binding (ortholog); spectrin binding (ortholog); INVOLVED IN absorption of visible light (ortholog); cellular response to light stimulus (ortholog); detection of light stimulus (ortholog); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH Coats disease (ortholog); cone-rod dystrophy (ortholog); cone-rod dystrophy 14 (ortholog); FOUND IN cell-cell junction (ortholog); Golgi apparatus (ortholog); membrane (ortholog) NW_004955429 17787337 17791982 - 102012673 AGCD01028867;GBBH01131777;XM_005387085 XP_005387142 MODEL 9039655 protein-coding LOC102011841 25-hydroxyvitamin D-1 alpha hydroxylase, mitochondrial ENCODES a protein that exhibits calcidiol 1-monooxygenase activity (ortholog); secalciferol 1-monooxygenase activity (ortholog); INVOLVED IN bone mineralization (ortholog); calcitriol biosynthetic process from calciol (ortholog); calcium ion homeostasis (ortholog); ASSOCIATED WITH Acidoses (ortholog); acute kidney failure (ortholog); alcohol use disorder (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog) NW_004955458 5472404 5477001 - 102011841 AGCD01047494;GBDF01140801;XM_005397416 XP_005397473 MODEL 8743211 protein-coding Psmb2 proteasome 20S subunit beta 2 ENCODES a protein that exhibits structural constituent of proteasome (ortholog); INVOLVED IN proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); regulation of proteasomal protein catabolic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); urinary bladder cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955452 13688218 13725318 - 102021514 AGCD01044431;GBBH01033049;XM_005395153 XP_005395210 MODEL 9056221 protein-coding Snapc4 small nuclear RNA activating complex polypeptide 4 ENCODES a protein that exhibits DNA binding (ortholog); RNA polymerase II general transcription initiation factor activity (ortholog); RNA polymerase III general transcription initiation factor activity (ortholog); INVOLVED IN snRNA transcription by RNA polymerase II (ortholog); snRNA transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); genetic disease (ortholog); long QT syndrome (ortholog); FOUND IN snRNA-activating protein complex (ortholog) NW_004955513 4330579 4349136 + 102007045 AGCD01066926;AGCD01066927;GBDJ01136998;XM_005408497;XM_013506645;XM_013506646;XM_013506647;XM_013506648;XM_013506649;XM_013506650;XM_013506651;XM_013506652;XM_013506653;XM_013506654 XP_005408554;XP_013362099;XP_013362100;XP_013362101;XP_013362102;XP_013362103;XP_013362104;XP_013362105;XP_013362106;XP_013362107;XP_013362108 MODEL 8898678 protein-coding LOC102026473 uncharacterized LOC102026473 NW_004955437 19250943 19258691 - 102026473 AGCD01034840;AGCD01034841;GBDF01241312;XM_005390005 XP_005390062 MODEL 9009351 protein-coding LOC102002971 butyrophilin subfamily 1 member A1-like NW_004955581 1320018 1344045 + 102002971 AGCD01075730;GBBH01227542;XM_013509756;XM_013509757;XM_013509758;XM_013509759;XM_013509760;XM_013509761;XM_013509762;XR_001232489 XP_013365210;XP_013365211;XP_013365212;XP_013365213;XP_013365214;XP_013365215;XP_013365216 MODEL 8816062 protein-coding Rnf138 ring finger protein 138 ENCODES a protein that exhibits protein kinase binding (ortholog); single-stranded DNA binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); DNA double-strand break processing involved in repair via single-strand annealing (ortholog); double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN chromosome (ortholog); glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955402 19344480 19358799 + 102024745 AGCD01000561;GBDF01008387;GBDK01238354;XM_013507405 XP_013362859 MODEL 9037309 protein-coding LOC102026126 calcium-activated chloride channel regulator 4 NW_004955423 7624926 7652410 - 102026126 AGCD01023609;XM_005385359 XP_005385416 MODEL 8946074 protein-coding Pls3 plastin 3 ENCODES a protein that exhibits structural constituent of presynaptic actin cytoskeleton (ortholog); INVOLVED IN bone development (ortholog); inner ear auditory receptor cell differentiation (ortholog); regulation of synaptic vesicle cycle (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH Anterior Diaphragmatic Hernia (ortholog); Chemical and Drug Induced Liver Injury (ortholog); congenital diaphragmatic hernia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); neuromuscular junction (ortholog) NW_004955490 125913 221152 - 102024576 AGCD01060059;AGCD01060060;AGCD01060061;GBCE01031000;XM_005404619;XM_013504543 XP_005404676;XP_013359997 MODEL 8802783 pseudo LOC102005735 L-lactate dehydrogenase A-like 6B NW_004955507 6103959 6105265 - 102005735 AGCD01065696 MODEL 8717684 ncrna LOC102029223 uncharacterized LOC102029223 NW_004955538 3291100 3295111 - 102029223 AGCD01071157;XR_264808 MODEL 9019949 protein-coding Ppp2r2b protein phosphatase 2 regulatory subunit Bbeta ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN mitochondrial fission (ortholog); mitochondrial fragmentation involved in apoptotic process (ortholog); neuron differentiation (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); brain disease (ortholog); breast cancer (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955415 7054296 7510179 + 102013283 AGCD01016035;AGCD01016036;AGCD01016037;AGCD01016038;AGCD01016039;AGCD01016040;AGCD01016041;AGCD01016042;AGCD01016043;AGCD01016044;GBDF01195584;XM_005380663;XM_005380664;XM_005380665;XM_013512388 XP_005380720;XP_005380721;XP_005380722;XP_013367842 MODEL 8943993 protein-coding Pcyox1 prenylcysteine oxidase 1 ENCODES a protein that exhibits FAD binding (ortholog); farnesylcysteine lyase activity (ortholog); prenylcysteine oxidase activity (ortholog); INVOLVED IN chloride transmembrane transport (ortholog); prenylated protein catabolic process (ortholog); prenylcysteine catabolic process (ortholog); ASSOCIATED WITH Weight Gain (ortholog); FOUND IN lysosome (ortholog); very-low-density lipoprotein particle (ortholog) NW_004955424 14854755 14865920 - 102006478 AGCD01024660;AGCD01024661;GBDF01155378;XM_005385617 XP_005385674 MODEL 9016047 protein-coding LOC102009861 zinc finger protein 420-like NW_004955429 13414895 13444098 + 102009861 AGCD01028748;AGCD01028749;GBDF01252222;XM_013515503;XM_013515504;XM_013515505;XM_013515506 XP_013370957;XP_013370958;XP_013370959;XP_013370960 MODEL 8888047 ncrna LOC102010990 uncharacterized LOC102010990 NW_004955471 9880793 9917131 + 102010990 AGCD01053222;GBDF01194926;XR_263532 MODEL 10182130 protein-coding LOC106147185 translation initiation factor IF-2-like NW_004955524 1464405 1464488 + 106147185 AGCD01068753;GBCQ01009310;XM_013507325 XP_013362779 MODEL 8861038 protein-coding LOC102019047 Golgi apparatus membrane protein TVP23 homolog B NW_004955467 2126184 2148053 + 102019047 AGCD01051302;GBBH01035105;XM_005399326 XP_005399383 MODEL 39132845 snorna SNORA73 Small nucleolar RNA SNORA73 family 9046475 pseudo LOC102003959 ESF1 homolog pseudogene NW_004955413 20383463 20386134 - 102003959 AGCD01014215 MODEL 8994640 ncrna LOC102028155 uncharacterized LOC102028155 NW_004955452 8487379 8495026 - 102028155 AGCD01044217;GBDF01225597;XR_262662 MODEL 10193916 ncrna LOC106150026 uncharacterized LOC106150026 NW_004955461 3038169 3047728 + 106150026 AGCD01048845;GBDF01089417;XR_001236553;XR_001236554 MODEL 8811797 protein-coding LOC102028812 testis-specific protein TSX-like NW_004955591 414675 454117 - 102028812 AGCD01076262;AGCD01076263;AGCD01076264;AGCD01076265;AGCD01076266;GBDF01124586;XM_013509965 XP_013365419 MODEL 8941572 protein-coding LOC102010999 uncharacterized LOC102010999 NW_004955415 28977064 28978164 + 102010999 AGCD01016646;XM_005381137 XP_005381194 MODEL 8780160 protein-coding Slc25a29 solute carrier family 25 member 29 ENCODES a protein that exhibits arginine:ornithine antiporter activity (ortholog); basic amino acid transmembrane transporter activity (ortholog); high-affinity L-arginine transmembrane transporter activity (ortholog); INVOLVED IN carnitine transport (ortholog); L-arginine transmembrane transport (ortholog); L-histidine transmembrane transport (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955438 21383805 21393897 - 102018028 AGCD01035539;AGCD01035540;AGCD01035541;GBDF01015561;GBDI01129385;XM_013517271 XP_013372725 MODEL 8815416 pseudo LOC102027477 coiled-coil-helix-coiled-coil-helix domain-containing protein 2 pseudogene NW_004955403 36366570 36367818 + 102027477 AGCD01002537 MODEL 39131370 protein-coding SLF2 SMC5-SMC6 complex localization factor 2 8740003 ncrna LOC102011372 uncharacterized LOC102011372 NW_004955445 18244255 18269680 - 102011372 AGCD01039901;GBCQ01003080;XR_001235583;XR_001235584;XR_001235585;XR_001235586;XR_001235587;XR_001235588;XR_001235589;XR_001235590;XR_001235591;XR_001235592 MODEL 8839446 ncrna LOC102026478 uncharacterized LOC102026478 NW_004955546 207482 225463 + 102026478 AGCD01071956;AGCD01071957;AGCD01071958;XR_264884 MODEL 9064649 protein-coding LOC102015975 olfactory receptor 10AG1-like NW_004955511 5038953 5039909 - 102015975 AGCD01066544;XM_005408281 XP_005408338 MODEL 8871819 ncrna LOC102024660 uncharacterized LOC102024660 NW_004955465 5887798 5910079 - 102024660 AGCD01050433;AGCD01050434;AGCD01050435;GBCQ01057754;XR_001236758;XR_001236759;XR_001236760;XR_263238 MODEL 8974849 pseudo LOC102017897 mitochondrial import inner membrane translocase subunit Tim9-like NW_004955506 1117685 1117951 - 102017897 AGCD01065246 MODEL 8789865 protein-coding Prmt9 protein arginine methyltransferase 9 ENCODES a protein that exhibits protein-arginine N-methyltransferase activity (ortholog); protein-arginine omega-N symmetric methyltransferase activity (ortholog); INVOLVED IN mRNA processing (ortholog); ASSOCIATED WITH Cocaine-Related Disorders (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog) NW_004955428 3215335 3243569 - 102012456 AGCD01027650;GBDF01251549;XM_005386669 XP_005386726 MODEL 8745076 protein-coding Rab3d RAB3D, member RAS oncogene family ENCODES a protein that exhibits G protein activity (ortholog); GTP-dependent protein binding (ortholog); myosin V binding (ortholog); INVOLVED IN bone resorption (ortholog); peptidyl-cysteine methylation (ortholog); positive regulation of regulated secretory pathway (ortholog); FOUND IN cytoplasmic microtubule (ortholog); secretory vesicle (ortholog); zymogen granule (ortholog) NW_004955495 2254336 2259211 - 102018939 AGCD01061759;AGCD01061760;GBBH01063907;XM_005405649;XM_013505109 XP_005405706;XP_013360563 MODEL 8897080 pseudo LOC102006832 uridine-cytidine kinase 2 pseudogene NW_004955444 56524 61263 - 102006832 AGCD01038648 MODEL 9006013 trna Trnam-cau transfer RNA methionine (anticodon CAU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978797 AGCD01050592;AGCD01050595;AGCD01050596;AGCD01050607;AGCD01050636;AGCD01057602;AGCD01057629;AGCD01057630;AGCD01071784 MODEL 10184170 ncrna LOC106147186 uncharacterized LOC106147186 NW_004955524 848638 852760 - 106147186 AGCD01068718;GBCE01081037;XR_001231959 MODEL 8902003 pseudo LOC102021938 casein kinase I isoform epsilon pseudogene NW_004955452 11410970 11412430 - 102021938 AGCD01044335;AGCD01044336;XM_005395310 MODEL 8987797 pseudo LOC102019451 arylacetamide deacetylase-like NW_004955448 3159746 3167553 - 102019451 AGCD01041306 MODEL 39132839 snorna SNORA73 Small nucleolar RNA SNORA73 family 9047206 ncrna LOC102030629 uncharacterized LOC102030629 NW_004955478 8397471 8465351 + 102030629 AGCD01056024;AGCD01056025;AGCD01056026;AGCD01056027;GBDK01300263;XR_001230850;XR_263710 MODEL 8876351 ncrna LOC102007199 uncharacterized LOC102007199 NW_004955409 10077543 10110578 - 102007199 AGCD01009457;AGCD01009458;GBDF01260753;XR_001232639;XR_001232640;XR_259766 MODEL 8928785 protein-coding Ephb1 EPH receptor B1 ENCODES a protein that exhibits axon guidance receptor activity (ortholog); protein tyrosine kinase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN angiogenesis (ortholog); axon guidance (ortholog); camera-type eye morphogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH aortic dissection (ortholog); autistic disorder (ortholog); COVID-19 (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); early endosome membrane (ortholog) NW_004955501 3424112 3821727 - 102020266 AGCD01064105;AGCD01064106;GBDF01113237;XM_005406784 XP_005406841 MODEL 8867740 ncrna LOC102027480 uncharacterized LOC102027480 NW_004955404 6243862 6285905 - 102027480 AGCD01003317;GBDF01122974;XR_001234636;XR_001234637 MODEL 8798337 protein-coding Rnf139 ring finger protein 139 ENCODES a protein that exhibits protease binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-like protein transferase activity (ortholog); INVOLVED IN ERAD pathway (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of translation (ortholog); ASSOCIATED WITH renal cell carcinoma (ortholog); FOUND IN Derlin-1 retrotranslocation complex (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955540 3140649 3153546 + 102008664 AGCD01071335;GBCE01117033;XM_005410943 XP_005411000 MODEL 9018343 protein-coding Pex11a peroxisomal biogenesis factor 11 alpha ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); peroxisome fission (ortholog); peroxisome membrane biogenesis (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Dyslipidemias (ortholog); obesity (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog); protein-containing complex (ortholog) NW_004955416 15527925 15537497 + 102026318 AGCD01017335;GBDI01024439;XM_013512553;XR_001233330;XR_001233331 XP_013368007 MODEL 8912923 protein-coding Psmb3 proteasome 20S subunit beta 3 ENCODES a protein that exhibits structural constituent of proteasome (ortholog); INVOLVED IN proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); regulation of proteasomal protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); proteasome complex (ortholog) NW_004955451 13835173 13841626 + 102019348 AGCD01043507;AGCD01043508;GBBH01001656;XM_005394282 XP_005394339 MODEL 9000673 protein-coding Septin12 septin 12 ENCODES a protein that exhibits GTP binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN flagellated sperm motility (ortholog); positive regulation of protein localization (ortholog); septin ring assembly (ortholog); ASSOCIATED WITH spermatogenic failure 10 (ortholog); FOUND IN acrosomal vesicle (ortholog); microtubule cytoskeleton (ortholog); midbody (ortholog) NW_004955442 12704546 12717905 + 102004523 AGCD01037745;GBDF01236610;XM_005391270;XM_005391271 XP_005391327;XP_005391328 MODEL 8804181 ncrna LOC102009829 uncharacterized LOC102009829 NW_004955415 3199565 3227325 + 102009829 AGCD01015927;GBDF01041582;XR_260260;XR_260261 MODEL 8894513 protein-coding Tlk2 tousled like kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN cellular response to gamma radiation (ortholog); chromosome segregation (ortholog); DNA damage response (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal dominant intellectual developmental disorder 57 (ortholog); Developmental Disease (ortholog); FOUND IN intermediate filament (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955478 9100863 9229448 - 102007009 AGCD01056054;AGCD01056055;GBDF01084206;GBDK01189111;XM_013503135 XP_013358589 MODEL 8732528 protein-coding LOC102023670 cathepsin G NW_004955409 35767304 35770140 + 102023670 AGCD01010432;XM_005376992 XP_005377049 MODEL 9065987 pseudo LOC102015977 zinc finger protein 14-like NW_004955432 4626616 4648702 + 102015977 AGCD01030733 MODEL 9037830 protein-coding Wnk3 WNK lysine deficient protein kinase 3 ENCODES a protein that exhibits molecular condensate scaffold activity (ortholog); protein kinase activity (ortholog); protein serine kinase activity (ortholog); INVOLVED IN cell volume homeostasis (ortholog); cellular hyperosmotic response (ortholog); maintenance of blood-brain barrier (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); Prieto syndrome (ortholog); FOUND IN adherens junction (ortholog); bicellular tight junction (ortholog); cytoplasm (ortholog) NW_004955475 1441068 1641599 - 102020660 AGCD01054753;AGCD01054754;AGCD01054755;AGCD01054756;AGCD01054757;GBDF01016694;XM_013502857;XM_013502858;XM_013502859;XM_013502860;XM_013502861 XP_013358311;XP_013358312;XP_013358313;XP_013358314;XP_013358315 MODEL 9023214 protein-coding Rasa2 RAS p21 protein activator 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); melanoma (ortholog); Noonan syndrome (ortholog) NW_004955508 4097455 4199954 - 102029422 AGCD01065862;GBDK01323932;XM_013506264 XP_013361718 MODEL 10274412 ncrna LOC106148013 uncharacterized LOC106148013 NW_004955414 18261175 18282660 + 106148013 AGCD01015275;AGCD01015276;GBBH01005746;XR_001233105;XR_001233106 MODEL 8710213 protein-coding Pcyox1l prenylcysteine oxidase 1 like ENCODES a protein that exhibits prenylcysteine oxidase activity (ortholog); INVOLVED IN neutrophil-mediated killing of bacterium (ortholog); FOUND IN extracellular region (ortholog) NW_004955415 5052782 5059939 - 102026102 AGCD01015989;GBBH01177322;GBDF01075424;XM_005380613 XP_005380670 MODEL 8898684 protein-coding C2cd2l C2CD2 like ENCODES a protein that exhibits insulin binding (ortholog); phosphatidylinositol binding (ortholog); phosphatidylinositol transfer activity (ortholog); INVOLVED IN positive regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH RASopathy (ortholog); FOUND IN cortical endoplasmic reticulum (ortholog); cytoplasmic side of apical plasma membrane (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955412 20214915 20232260 + 102026620 AGCD01012997;AGCD01012998;AGCD01012999;GBBH01060462;GBDF01279346;XM_005378305;XM_013511211 XP_005378362;XP_013366665 MODEL 8954288 protein-coding Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN brain development (ortholog); camera-type eye development (ortholog); establishment of protein localization to endoplasmic reticulum membrane (ortholog); ASSOCIATED WITH amenorrhea (ortholog); cryptorchidism (ortholog); genetic disease (ortholog); FOUND IN cis-Golgi network (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955440 2551015 2645938 + 102007155 AGCD01036210;AGCD01036211;AGCD01036212;AGCD01036213;AGCD01036214;AGCD01036215;AGCD01036216;GBDI01170428;XM_005390760 XP_005390817 MODEL 8845527 protein-coding Samd9l sterile alpha motif domain containing 9 like INVOLVED IN common myeloid progenitor cell proliferation (ortholog); endosomal vesicle fusion (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); microcephaly (ortholog); FOUND IN early endosome (ortholog); mitochondrion (ortholog) NW_004955432 10007631 10028989 - 102007360 AGCD01030921;AGCD01030922;AGCD01030923;GBDK01230974;XM_005388027;XM_005388029;XM_013516048;XM_013516049;XM_013516050;XM_013516051 XP_005388084;XP_005388086;XP_013371502;XP_013371503;XP_013371504;XP_013371505 MODEL 8903274 protein-coding Snapc5 small nuclear RNA activating complex polypeptide 5 ENCODES a protein that exhibits RNA polymerase II general transcription initiation factor activity (ortholog); RNA polymerase III general transcription initiation factor activity (ortholog); INVOLVED IN snRNA transcription by RNA polymerase II (ortholog); snRNA transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH long QT syndrome (ortholog); Noonan syndrome (ortholog); RASopathy (ortholog); FOUND IN nucleoplasm (ortholog); snRNA-activating protein complex (ortholog) NW_004955450 9176462 9197592 + 102029028 AGCD01042585;GBDF01223026;XM_005393702;XM_005393703;XM_013518953 XP_005393759;XP_005393760;XP_013374407 MODEL 8783238 protein-coding Ptprf protein tyrosine phosphatase receptor type F ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); chondroitin sulfate proteoglycan binding (ortholog); insulin receptor binding (ortholog); INVOLVED IN cell migration (ortholog); homophilic cell-cell adhesion (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN insulin signaling pathway; ASSOCIATED WITH Aplasia or Hypoplasia of Breasts and/or Nipples 2 (ortholog); congestive heart failure (ortholog); Disease Progression (ortholog); FOUND IN endosome (ortholog); excitatory synapse (ortholog); growth cone (ortholog) NW_004955537 3096601 3185682 + 102029007 AGCD01070946;AGCD01070947;AGCD01070948;GBDI01341617;XM_005410662;XM_005410663;XM_005410664;XM_005410665;XM_005410670 XP_005410719;XP_005410720;XP_005410721;XP_005410722;XP_005410727 MODEL 9009272 ncrna LOC102028814 uncharacterized LOC102028814 NW_004955451 1297594 1300931 + 102028814 AGCD01042965;GBDF01262636;XR_262567 MODEL 9057611 pseudo LOC102026127 BBSome-interacting protein 1-like NW_004955424 1870763 1872513 - 102026127 AGCD01024249 MODEL 8917430 pseudo LOC102011002 dolichol-phosphate mannosyltransferase subunit 1 pseudogene NW_004955416 12229992 12241469 - 102011002 AGCD01017202 MODEL 8824404 protein-coding Trappc3l trafficking protein particle complex subunit 3L FOUND IN TRAPP complex (ortholog) NW_004955526 120620 217855 + 102025940 AGCD01069212;AGCD01069213;AGCD01069214;AGCD01069215;GBCQ01154261;XM_005409744;XM_013507364;XM_013507365;XM_013507366;XM_013507367;XM_013507368 XP_005409801;XP_013362818;XP_013362819;XP_013362820;XP_013362821;XP_013362822 MODEL 8958353 pseudo LOC102029224 heterogeneous nuclear ribonucleoprotein A3 pseudogene NW_004955437 4735394 4736928 + 102029224 AGCD01034369 MODEL 8867331 protein-coding Plscr1 phospholipid scramblase 1 ENCODES a protein that exhibits calcium ion binding (ortholog); CD4 receptor binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN acute-phase response (ortholog); apoptotic process (ortholog); cellular response to cytokine stimulus (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); Human Influenza (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955474 10953381 10989100 + 102017977 AGCD01054604;AGCD01054605;GBCQ01123186;XM_005401430;XM_005401431;XM_005401432;XM_013502784 XP_005401487;XP_005401488;XP_005401489;XP_013358238 MODEL 8835092 protein-coding Slc25a3 solute carrier family 25 member 3 ENCODES a protein that exhibits protein-containing complex binding (ortholog); ASSOCIATED WITH Mitochondrial Phosphate Carrier Deficiency (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955405 34584676 34591470 + 102030035 AGCD01005379;AGCD01005380;GBBH01000009;GBDJ01019336;XM_013518582;XM_013518583 XP_013374036;XP_013374037 MODEL 8935220 protein-coding Sgsm3 small G protein signaling modulator 3 ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN endosomal transport (ortholog); plasma membrane to endosome transport (ortholog); positive regulation of GTPase activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Autosomal Recessive Intellectual Developmental Disorder 84 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); gap junction (ortholog) NW_004955413 26094170 26139062 + 102008837 AGCD01014423;AGCD01014424;GBDF01054066;XM_005379314;XM_005379315;XM_005379318;XM_005379319;XM_005379320;XM_005379321;XM_013511485;XM_013511486 XP_005379371;XP_005379372;XP_005379375;XP_005379376;XP_005379377;XP_005379378;XP_013366939;XP_013366940 MODEL 39133418 snrna U4 U4 spliceosomal RNA 150537111 snorna SNORA79 small nucleolar RNA, H/ACA box 79 8844229 protein-coding LOC102019053 olfactory receptor 51A7-like NW_004955414 20454679 20455620 + 102019053 AGCD01015375;XM_005380057 XP_005380114 MODEL 8970783 protein-coding LOC102009862 olfactory receptor 1440 NW_004955511 3826101 3827067 - 102009862 AGCD01066477;XM_005408060 XP_005408117 MODEL 8925844 protein-coding LOC102024662 olfactory receptor 958 NW_004955412 24894780 24897398 + 102024662 AGCD01013130;XM_005378641 XP_005378698 MODEL 8875763 protein-coding LOC102017899 uncharacterized LOC102017899 NW_004955508 4019743 4057039 - 102017899 AGCD01065855;AGCD01065856;AGCD01065857;AGCD01065858;AGCD01065859;AGCD01065860;GBBH01063497;GBDJ01031312;XM_005407755 XP_005407812 MODEL 8875141 protein-coding Rnf14 ring finger protein 14 ENCODES a protein that exhibits nuclear androgen receptor binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-like protein transferase activity (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); protein K6-linked ubiquitination (ortholog); protein ubiquitination (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic ribosome (ortholog) NW_004955415 11797287 11826936 - 102028957 AGCD01016176;AGCD01016177;AGCD01016178;GBBH01061472;GBDF01087296;XM_013512340 XP_013367794 MODEL 9038028 protein-coding LOC102003961 olfactory receptor 51I1-like NW_004955414 20943623 20944567 + 102003961 AGCD01015396;XM_005380488 XP_005380545 MODEL 9021075 protein-coding LOC102028161 zinc finger protein 569-like NW_004955456 8042040 8045387 + 102028161 AGCD01046447;GBDF01010488;XM_005396693 XP_005396750 MODEL 10287363 ncrna LOC106150027 uncharacterized LOC106150027 NW_004955461 14625185 14628313 - 106150027 AGCD01049057;GBDK01101991;XR_001236556 MODEL 8887956 ncrna LOC102008711 uncharacterized LOC102008711 NW_004955467 9917224 9927059 + 102008711 AGCD01051535;GBDF01226367;XR_001236854;XR_001236855 MODEL 8733592 protein-coding Rdh11 retinol dehydrogenase 11 ENCODES a protein that exhibits 11-cis-retinol dehydrogenase (NADP+) activity (ortholog); aldehyde dehydrogenase (NADP+) activity (ortholog); all-trans-retinol dehydrogenase (NADP+) activity (ortholog); INVOLVED IN cellular detoxification of aldehyde (ortholog); retinal metabolic process (ortholog); retinoid metabolic process (ortholog); PARTICIPATES IN retinoid cycle metabolic pathway; retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH Retinal Dystrophy, Juvenile Cataracts, and Short Stature Syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); photoreceptor inner segment (ortholog) NW_004955466 2506641 2521506 + 102011294 AGCD01050740;AGCD01050741;AGCD01050742;GBDI01113403;XM_005399068 XP_005399125 MODEL 8780748 protein-coding Ephb2 EPH receptor B2 ENCODES a protein that exhibits amyloid-beta binding (ortholog); axon guidance receptor activity (ortholog); ephrin receptor activity (ortholog); INVOLVED IN angiogenesis (ortholog); animal organ morphogenesis (ortholog); axon guidance (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; syndecan signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Anorectal Malformations (ortholog); Candidemia (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); dendrite (ortholog) NW_004955452 2844713 2986790 + 102010660 AGCD01043905;AGCD01043906;AGCD01043907;GBBH01093218;XM_005394747;XM_005394748;XM_013519671 XP_005394804;XP_005394805;XP_013375125 MODEL 8723231 protein-coding LOC102005737 olfactory receptor 8J3-like NW_004955511 1491665 1492606 + 102005737 AGCD01066369;XM_005407963 XP_005408020 MODEL 8788880 protein-coding Wnk4 WNK lysine deficient protein kinase 4 ENCODES a protein that exhibits chloride ion binding (ortholog); ion channel inhibitor activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN activation of protein kinase activity (ortholog); aldosterone secretion (ortholog); calcium ion homeostasis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Gitelman syndrome (ortholog); hypertension (ortholog); FOUND IN bicellular tight junction (ortholog); cell body (ortholog); cytoplasm (ortholog) NW_004955451 16593840 16606817 + 102028924 AGCD01043695;AGCD01043696;GBBH01026714;GBDF01163377;XM_013519256 XP_013374710 MODEL 9055513 pseudo LOC102030630 zinc transporter ZIP2-like NW_004955416 203639 216011 + 102030630 AGCD01016781;AGCD01016782;AGCD01016783 MODEL 9015159 protein-coding LOC102011373 zinc finger protein 664-like NW_004955569 341373 356350 + 102011373 AGCD01074574;AGCD01074575;XM_005413508 XP_005413565 MODEL 8964855 protein-coding Ppp2r2c protein phosphatase 2 regulatory subunit Bgamma ASSOCIATED WITH Emphysema (ortholog) NW_004955514 3863461 3893026 + 102009975 AGCD01067119;GBDF01253553;XM_005408859 XP_005408916 MODEL 8953690 protein-coding LOC102012212 putative DBH-like monooxygenase protein 2 NW_004955494 1292620 1301008 + 102012212 AGCD01061393;GBDF01104482;XM_005405397 XP_005405454 MODEL 8798305 protein-coding Prnd prion like protein doppel ENCODES a protein that exhibits copper ion binding (ortholog); INVOLVED IN acrosome reaction (ortholog); intracellular copper ion homeostasis (ortholog); single fertilization (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955415 15469500 15474817 + 102008218 AGCD01016345;GBDF01009044;XM_005380819 XP_005380876 MODEL 8814297 ncrna LOC102009839 uncharacterized LOC102009839 NW_004955418 27098258 27125846 - 102009839 AGCD01019403;GBDK01371466;XR_001233544;XR_001233545;XR_001233546;XR_260585 MODEL 8807069 protein-coding Septin14 septin 14 INVOLVED IN neuron migration (ortholog); protein localization to perinuclear region of cytoplasm (ortholog); spermatid development (ortholog); ASSOCIATED WITH glioblastoma (ortholog); Parkinson's disease (ortholog); FOUND IN acrosomal vesicle (ortholog); axon (ortholog); cytoplasm (ortholog) NW_004955456 8066570 8102318 - 102027491 AGCD01046447;AGCD01046448;AGCD01046449;GBDF01128136;XM_005396691 XP_005396748 MODEL 9053529 protein-coding Slc25a30 solute carrier family 25 member 30 ENCODES a protein that exhibits solute:inorganic anion antiporter activity (ortholog); INVOLVED IN inorganic anion transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN mitochondrion (ortholog) NW_004955518 3182085 3203061 + 102014937 AGCD01067795;GBCQ01178160;XM_005409085 XP_005409142 MODEL 8765418 pseudo LOC102002972 uncharacterized LOC102002972 NW_004955449 17868296 17939598 - 102002972 AGCD01042269;AGCD01042270;AGCD01042271;AGCD01042272;AGCD01042273;AGCD01042274;AGCD01042275 MODEL 8837726 pseudo LOC102023673 cytochrome c oxidase subunit 7A-related protein, mitochondrial pseudogene NW_004955462 7511151 7511917 - 102023673 AGCD01049305 MODEL 10119970 protein-coding LOC106147187 vomeronasal type-2 receptor 116-like NW_004955524 1583691 1876205 + 106147187 AGCD01068757;AGCD01068758;AGCD01068759;AGCD01068760;AGCD01068761;AGCD01068762;AGCD01068763;AGCD01068764;AGCD01068765;AGCD01068766;AGCD01068767;AGCD01068768;AGCD01068769;AGCD01068770;AGCD01068771;AGCD01068772;AGCD01068773;AGCD01068774;AGCD01068775;AGCD01068776;AGCD01068777;AGCD01068778;AGCD01068779;AGCD01068780;AGCD01068781;XM_013507341 XP_013362795 MODEL 39132842 snorna SNORA73 Small nucleolar RNA SNORA73 family 8895307 pseudo LOC102007200 actin, cytoplasmic 2-like NW_004955409 20791291 20792243 + 102007200 AGCD01009930 MODEL 8983235 protein-coding LOC102019452 cytochrome b reductase 1 ENCODES a protein that exhibits identical protein binding (ortholog); oxidoreductase activity, acting on metal ions (ortholog); transmembrane ascorbate ferrireductase activity (ortholog); INVOLVED IN ascorbate homeostasis (ortholog); intracellular iron ion homeostasis (ortholog); multicellular organismal-level iron ion homeostasis (ortholog); PARTICIPATES IN iron uptake pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); membrane (ortholog) NW_004955449 3368976 3394405 - 102019452 AGCD01041848;AGCD01041849;AGCD01041850;AGCD01041851;GBCE01000144;XM_005393233;XM_013518792 XP_005393290;XP_013374246 MODEL 8720145 protein-coding LOC102021945 granzyme H-like NW_004955409 35505067 35515345 + 102021945 AGCD01010424;AGCD01010425;GBDK01074391;XM_005376986;XM_005376989;XM_005376990;XM_013510455 XP_005377043;XP_005377046;XP_005377047;XP_013365909 MODEL 8820091 protein-coding Ptprg protein tyrosine phosphatase receptor type G ENCODES a protein that exhibits identical protein binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN negative regulation of epithelial cell migration (ortholog); negative regulation of neuron projection development (ortholog); regulation of homophilic cell adhesion (ortholog); ASSOCIATED WITH Stomach Neoplasms (ortholog); FOUND IN extracellular region (ortholog) NW_004955517 3676342 4352909 - 102003052 AGCD01067669;AGCD01067670;AGCD01067671;AGCD01067672;AGCD01067673;AGCD01067674;AGCD01067675;AGCD01067676;AGCD01067677;AGCD01067678;AGCD01067679;AGCD01067680;AGCD01067681;AGCD01067682;AGCD01067683;AGCD01067684;AGCD01067685;AGCD01067686;AGCD01067687;AGCD01067688;AGCD01067689;GBDF01090393;GBDF01090403;XM_013506946 XP_013362400 MODEL 8931119 protein-coding Spn sialophorin ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); cell surface receptor signaling pathway (ortholog); chronic inflammatory response (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); calcinosis (ortholog); Experimental Arthritis (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); cleavage furrow (ortholog) NW_004955493 7256505 7258607 - 102010498 AGCD01061171;AGCD01061172;GBBH01003419;GBCE01185294;XM_013504779 XP_013360233 MODEL 9017901 pseudo LOC102027481 cyclic AMP-dependent transcription factor ATF-4-like NW_004955452 6309189 6310436 - 102027481 AGCD01044102 MODEL 8831141 protein-coding Pex11b peroxisomal biogenesis factor 11 beta ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN peroxisome fission (ortholog); peroxisome organization (ortholog); regulation of peroxisome size (ortholog); ASSOCIATED WITH cataract (ortholog); genetic disease (ortholog); infantile Refsum disease (ortholog); FOUND IN mitochondrion (ortholog); peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955568 174770 183078 + 102003497 AGCD01074505;GBDF01044494;GBDK01018814;XM_005413426 XP_005413483 MODEL 8734543 protein-coding Psmb4 proteasome 20S subunit beta 4 ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); structural constituent of proteasome (ortholog); INVOLVED IN negative regulation of inflammatory response to antigenic stimulus (ortholog); proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); proteosome-associated autoinflammatory syndrome 3 (ortholog); FOUND IN ciliary basal body (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955589 976216 978566 - 102022554 AGCD01076185;GBDF01001317;XM_005414579 XP_005414636 MODEL 8938718 pseudo LOC102006833 sm-like protein LSM5 NW_004955563 332830 333970 + 102006833 AGCD01074061 MODEL 15036852 trna Trnan-auu transfer RNA asparagine (anticodon AUU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978824 8950446 protein-coding LOC102026814 survival motor neuron protein NW_004955575 300195 313794 - 102026814 AGCD01075212;GBBH01209210;XM_005413921;XM_005413922;XM_013509586 XP_005413978;XP_005413979;XP_013365040 MODEL 8858668 protein-coding LOC102011844 cytochrome c oxidase assembly factor 1 homolog INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); mitochondrial respiratory chain complex IV assembly (ortholog); FOUND IN mitochondrial complex I intermediate assembly complex (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955460 182778 285053 + 102011844 AGCD01048337;AGCD01048338;AGCD01048339;GBDF01047278;XM_005397712 XP_005397769 MODEL 9051398 protein-coding LOC102015980 vomeronasal type-2 receptor 116-like NW_004955524 4322863 4376791 - 102015980 AGCD01068967;AGCD01068968;AGCD01068969;AGCD01068970;AGCD01068971;XM_013507206 XP_013362660 MODEL 8892623 protein-coding Rasa3 RAS p21 protein activator 3 ENCODES a protein that exhibits calcium channel regulator activity (ortholog); INVOLVED IN cellular response to heat (ortholog); platelet activation (ortholog); ASSOCIATED WITH aplastic anemia (ortholog); Dwarfism (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog) NW_004955404 140906 225278 + 102026386 AGCD01003197;AGCD01003198;GBDI01126335;XM_005373923;XM_005373928;XM_013515439;XM_013515445;XM_013515454 XP_005373980;XP_005373985;XP_013370893;XP_013370899;XP_013370908 MODEL 9039029 protein-coding LOC102012215 aldose reductase-related protein 2-like NW_004955494 7960872 8029450 - 102012215 AGCD01061559;AGCD01061560;AGCD01061561;AGCD01061562;AGCD01061563;AGCD01061564;AGCD01061565;AGCD01061566;AGCD01061567;AGCD01061568;AGCD01061569;GBBH01186150;XM_013505016 XP_013360470 MODEL 8964867 protein-coding Pcyt1a phosphate cytidylyltransferase 1A, choline ENCODES a protein that exhibits calmodulin binding (ortholog); choline-phosphate cytidylyltransferase activity (ortholog); identical protein binding (ortholog); INVOLVED IN B cell proliferation (ortholog); CDP-choline pathway (ortholog); isotype switching (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; lamivudine pharmacokinetics pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Congenital Generalized Lipodystrophy Type 5 (ortholog); fundus dystrophy (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); glycogen granule (ortholog) NW_004955420 12464857 12513017 - 102010061 AGCD01020865;AGCD01020866;AGCD01020867;AGCD01020868;GBDF01002146;XM_005383124;XM_005383125;XM_005383126;XM_005383127;XM_005383129;XM_013513398 XP_005383181;XP_005383182;XP_005383183;XP_005383184;XP_005383186;XP_013368852 MODEL 8839450 protein-coding LOC102026479 olfactory receptor 6C74-like NW_004955546 2364630 2365951 + 102026479 AGCD01072088;XM_005411823 XP_005411880 MODEL 8885162 pseudo LOC102027499 40S ribosomal protein S4-like NW_004955410 30996259 31008547 + 102027499 AGCD01011313 MODEL 8892110 protein-coding C2cd3 C2 domain containing 3 centriole elongation regulator INVOLVED IN brain development (ortholog); centriole elongation (ortholog); cilium assembly (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955414 17444299 17557912 + 102008934 AGCD01015241;AGCD01015242;AGCD01015243;GBDF01118457;XM_013511935;XM_013511936;XM_013511937 XP_013367389;XP_013367390;XP_013367391 MODEL 8949712 pseudo LOC102026130 regulation of nuclear pre-mRNA domain-containing protein 1A-like NW_004955424 15797111 15823772 - 102026130 AGCD01024729;AGCD01024730 MODEL 9030869 protein-coding Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 ENCODES a protein that exhibits deoxynucleoside triphosphate hydrolase activity (ortholog); dGTP binding (ortholog); dGTPase activity (ortholog); INVOLVED IN dATP catabolic process (ortholog); defense response to virus (ortholog); deoxyribonucleotide catabolic process (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 5 (ortholog); FOUND IN chromosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955422 24714103 24780672 + 102028206 AGCD01023230;AGCD01023231;AGCD01023232;AGCD01023233;AGCD01023234;AGCD01023235;GBBH01005982;GBDF01177065;XM_013514015 XP_013369469 MODEL 8943135 ncrna LOC102028815 uncharacterized LOC102028815 NW_004955451 10956830 10959261 - 102028815 AGCD01043337;GBCB01089371;XR_262590 MODEL 8925499 ncrna LOC102011004 uncharacterized LOC102011004 NW_004955418 480761 481468 + 102011004 AGCD01018677;GBDK01046238;XR_260530 MODEL 8888592 pseudo LOC102029227 serine/threonine-protein kinase VRK2-like NW_004955441 4807312 4808940 + 102029227 AGCD01036854 MODEL 8934931 protein-coding Trappc4 trafficking protein particle complex subunit 4 INVOLVED IN autophagy (ortholog); dendrite development (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH Neurodevelopmental Disorder with Epilepsy, Spasticity, and Brain Atrophy (ortholog); Neurodevelopmental Disorder with Progressive Microcephaly, Spasticity, and Brain Anomalies (ortholog); FOUND IN dendrite (ortholog); Golgi stack (ortholog); postsynaptic density membrane (ortholog) NW_004955412 20129154 20133043 + 102022576 AGCD01012994;GBDF01004559;XM_005378290 XP_005378347 MODEL 8982520 protein-coding Ephb3 EPH receptor B3 ENCODES a protein that exhibits axon guidance receptor activity (ortholog); ephrin receptor activity (ortholog); INVOLVED IN angiogenesis (ortholog); axon guidance (ortholog); axonal fasciculation (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH malaria (ortholog); FOUND IN plasma membrane (ortholog) NW_004955420 22900588 22919924 - 102016275 AGCD01021213;AGCD01021214;GBDI01185928;GBDJ01230601;XM_013513587 XP_013369041 MODEL 626189167 snorna SNORA79B small nucleolar RNA, H/ACA box 79B 8983166 protein-coding Sgta small glutamine rich tetratricopeptide repeat co-chaperone alpha ENCODES a protein that exhibits BAT3 complex binding (ortholog); identical protein binding (ortholog); INVOLVED IN ERAD pathway (ortholog); negative regulation of ERAD pathway (ortholog); negative regulation of ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extrinsic component of synaptic vesicle membrane (ortholog) NW_004955495 5025038 5051810 - 102018300 AGCD01061970;AGCD01061971;AGCD01061972;GBCE01081756;XM_005405830;XM_005405831;XM_005405832;XM_013505255;XM_013505256;XM_013505257 XP_005405887;XP_005405888;XP_005405889;XP_013360709;XP_013360710;XP_013360711 MODEL 8896472 protein-coding LOC102011379 histone H2B type 1-B-like NW_004955581 88920 89732 + 102011379 AGCD01075657;XM_005414228 XP_005414285 MODEL 8719892 protein-coding Tll1 tolloid like 1 ENCODES a protein that exhibits collagen binding (ortholog); ASSOCIATED WITH atrial heart septal defect 6 (ortholog); congenital heart disease (ortholog); coronary artery disease (ortholog) NW_004955403 39299461 39491638 - 102011072 AGCD01002627;AGCD01002628;AGCD01002629;AGCD01002630;GBCE01123233;GBCQ01016540;XM_005373585 XP_005373642 MODEL 8832479 protein-coding LOC102018270 uncharacterized LOC102018270 NW_004955465 3342697 3344495 + 102018270 AGCD01050375;GBDF01176710;XM_005398979 XP_005399036 MODEL 8783093 protein-coding LOC102024663 T-cell surface glycoprotein CD1e, membrane-associated-like NW_004955468 10224376 10227747 + 102024663 AGCD01052074;GBDF01171361;XM_005400148;XM_013522340 XP_005400205;XP_013377794 MODEL 8763920 ncrna LOC102017904 uncharacterized LOC102017904 NW_004955431 14669607 14678845 - 102017904 AGCD01030337;GBDF01235010;XR_261473 MODEL 8895400 ncrna LOC102009847 uncharacterized LOC102009847 NW_004955487 8288681 8301499 - 102009847 AGCD01059432;AGCD01059433;GBDF01084799;XR_263988 MODEL 8958449 protein-coding LOC102009864 olfactory receptor 4D11-like NW_004955511 3981204 3982139 + 102009864 AGCD01066484;XM_005408268 XP_005408325 MODEL 8882461 ncrna LOC102029228 uncharacterized LOC102029228 NW_004955548 925354 937752 - 102029228 AGCD01072346;AGCD01072347;AGCD01072348;GBCQ01042786;XR_001232241;XR_001232242;XR_001232243;XR_001232244;XR_001232245;XR_001232246;XR_001232247;XR_001232248 MODEL 8896814 ncrna LOC102026815 uncharacterized LOC102026815 NW_004955448 1863405 1892292 + 102026815 AGCD01041270;GBDF01020852;XR_001235790;XR_262456;XR_262457 MODEL 9052458 ncrna LOC102002973 uncharacterized LOC102002973 NW_004955402 40884991 40894999 + 102002973 AGCD01001005;XR_259081 MODEL 8970638 protein-coding LOC102003963 platelet basic protein-like NW_004955474 308503 310298 + 102003963 AGCD01054213;GBCQ01144875;XM_005401302 XP_005401359 MODEL 8740336 protein-coding LOC102008712 oxidized low-density lipoprotein receptor 1 NW_004955413 7662314 7721687 + 102008712 AGCD01013828;AGCD01013829;AGCD01013830;GBDF01111532;XM_005378938 XP_005378995 MODEL 8745459 protein-coding LOC102005739 olfactory receptor 5L1-like NW_004955511 649905 655429 + 102005739 AGCD01066337;XM_013506360 XP_013361814 MODEL 39132944 snorna SNORA74 Small nucleolar RNA SNORA74 8805780 protein-coding Rhoa ras homolog family member A ENCODES a protein that exhibits G protein activity (ortholog); GDP binding (ortholog); GTP binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); alpha-beta T cell lineage commitment (ortholog); androgen receptor signaling pathway (ortholog); PARTICIPATES IN calcium signaling pathway via the calcium-sensing receptor; E-cadherin signaling pathway; eicosanoid signaling pathway; ASSOCIATED WITH Abnormalities, Drug-Induced (ortholog); acute myocardial infarction (ortholog); alopecia (ortholog); FOUND IN apical junction complex (ortholog); axon (ortholog); cell cortex (ortholog) NW_004955532 1300821 1347453 - 102012473 AGCD01070177;AGCD01070178;AGCD01070179;GBDF01010839;XM_005410198;XM_005410200 XP_005410255;XP_005410257 MODEL 8808078 protein-coding Rdh12 retinol dehydrogenase 12 ENCODES a protein that exhibits 11-cis-retinol dehydrogenase (NADP+) activity (ortholog); all-trans-retinol dehydrogenase (NAD+) activity (ortholog); all-trans-retinol dehydrogenase (NADP+) activity (ortholog); INVOLVED IN cellular detoxification of aldehyde (ortholog); retinol metabolic process (ortholog); visual perception (ortholog); PARTICIPATES IN altered retinoid cycle metabolic pathway; retinitis pigmentosa pathway; retinoid cycle metabolic pathway; ASSOCIATED WITH cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); Leber congenital amaurosis (ortholog); FOUND IN ciliary transition zone (ortholog); endoplasmic reticulum membrane (ortholog); photoreceptor inner segment (ortholog) NW_004955466 2473145 2485779 - 102010351 AGCD01050739;GBCE01139121;XM_005399065 XP_005399122 MODEL 39133422 snrna U4 U4 spliceosomal RNA 10086288 ncrna LOC106148014 uncharacterized LOC106148014 NW_004955414 18191979 18199903 + 106148014 AGCD01015272;XR_001233107 MODEL 9051638 protein-coding Ptprh protein tyrosine phosphatase receptor type H ENCODES a protein that exhibits cadherin binding (ortholog); protein tyrosine phosphatase activity (ortholog); FOUND IN cytosol (ortholog); microvillus (ortholog); plasma membrane (ortholog) NW_004955567 992880 1018343 + 102024391 AGCD01074450;AGCD01074451;AGCD01074452;AGCD01074453;GBDK01387246;XM_013509243;XM_013509244;XM_013509245;XR_001232403 XP_013364697;XP_013364698;XP_013364699 MODEL 8948495 protein-coding Plxna1 plexin A1 ENCODES a protein that exhibits semaphorin receptor activity (ortholog); INVOLVED IN dichotomous subdivision of terminal units involved in salivary gland branching (ortholog); gonadotrophin-releasing hormone neuronal migration to the hypothalamus (ortholog); neuron projection extension (ortholog); ASSOCIATED WITH DWORSCHAK-PUNETHA NEURODEVELOPMENTAL SYNDROME (ortholog); epilepsy (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN glutamatergic synapse (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955429 16482821 16522978 - 102030554 AGCD01028833;GBBH01185809;XM_013515479;XM_013515480 XP_013370933;XP_013370934 MODEL 9051825 protein-coding Prnp prion protein (Kanno blood group) ENCODES a protein that exhibits amyloid-beta binding (ortholog); aspartic-type endopeptidase inhibitor activity (ortholog); ATP-dependent protein binding (ortholog); INVOLVED IN amyloid precursor protein metabolic process (ortholog); cellular response to amyloid-beta (ortholog); cellular response to copper ion (ortholog); PARTICIPATES IN glypican signaling pathway; iron uptake pathway; Notch signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); asthma (ortholog); autism spectrum disorder (ortholog); FOUND IN cell surface (ortholog); dendrite (ortholog); endoplasmic reticulum (ortholog) NW_004955415 15442313 15454644 + 102007546 AGCD01016345;GBDJ01175870;XM_005380818 XP_005380875 MODEL 10386019 ncrna LOC106150028 uncharacterized LOC106150028 NW_004955461 8271377 8274545 - 106150028 AGCD01048927;XR_001236557 MODEL 8939384 protein-coding Rnf141 ring finger protein 141 ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein autoubiquitination (ortholog); regulation of DNA-templated transcription (ortholog) NW_004955414 26117073 26144845 - 102007108 AGCD01015638;GBCB01025783;XM_005380280;XM_005380281;XM_005380282 XP_005380337;XP_005380338;XP_005380339 MODEL 8904931 protein-coding Sh2d3a SH2 domain containing 3A NW_004955495 2758214 2769867 + 102003978 AGCD01061799;GBDJ01075053;XM_005405690;XM_005405691;XM_005405692;XM_005405693;XM_005405694 XP_005405747;XP_005405748;XP_005405749;XP_005405750;XP_005405751 MODEL 10307978 pseudo LOC106147188 nuclear receptor subfamily 1 group D member 2 pseudogene NW_004955408 2257593 2269898 + 106147188 AGCD01008001;AGCD01008002;AGCD01008003 MODEL 9033097 ncrna LOC102012219 uncharacterized LOC102012219 NW_004955495 5440402 5443188 - 102012219 AGCD01062007;GBDF01145786;XR_001231364 MODEL 8750877 protein-coding LOC102030633 putative olfactory receptor 3A4 NW_004955481 141049 141984 - 102030633 AGCD01056781;XM_005402913 XP_005402970 MODEL 8804450 protein-coding LOC102019456 cytochrome c oxidase assembly protein COX11, mitochondrial INVOLVED IN ATP biosynthetic process (ortholog); intracellular monoatomic cation homeostasis (ortholog); mitochondrial respiratory chain complex IV assembly (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); mitochondrial complex IV deficiency nuclear type 23 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); protein-containing complex (ortholog) NW_004955451 7635704 7642724 + 102019456 AGCD01043243;GBDF01193101;XM_005394089 XP_005394146 MODEL 8949342 pseudo LOC102009866 U2 small nuclear ribonucleoprotein B'' pseudogene NW_004955512 1307791 1314557 + 102009866 AGCD01066638 MODEL 9040166 pseudo LOC102003968 striatin-3-like NW_004955483 708746 721428 - 102003968 AGCD01057628 MODEL 8888279 protein-coding Pcyt1b phosphate cytidylyltransferase 1B, choline ENCODES a protein that exhibits choline-phosphate cytidylyltransferase activity (ortholog); identical protein binding (ortholog); INVOLVED IN CDP-choline pathway (ortholog); ovarian follicle development (ortholog); phosphatidylcholine biosynthetic process (ortholog); ASSOCIATED WITH systemic juvenile rheumatoid arthritis (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955509 4896208 4990101 - 102019300 AGCD01066090;AGCD01066091;AGCD01066092;AGCD01066093;AGCD01066094;GBCE01037339;XM_005407849;XM_005407850;XM_005407851;XM_005407852;XM_005407853;XM_013506300;XM_013506301 XP_005407906;XP_005407907;XP_005407908;XP_005407909;XP_005407910;XP_013361754;XP_013361755 MODEL 8713038 protein-coding C2cd4c C2 calcium dependent domain containing 4C FOUND IN cytosol (ortholog) NW_004955495 7236627 7243099 + 102025260 AGCD01062125;GBDF01192259;XM_005406041 XP_005406098 MODEL 8865381 protein-coding LOC102028816 zinc finger protein 420-like NW_004955948 376 11495 - 102028816 AGCD01078726;AGCD01078727;GBDF01011141;XM_005415152 XP_005415209 MODEL 8811268 protein-coding Spns1 SPNS lysolipid transporter 1, lysophospholipid ENCODES a protein that exhibits lysophospholipid:sodium symporter activity (ortholog); INVOLVED IN lysophospholipid transport (ortholog); phospholipid efflux (ortholog); regulation of lysosome organization (ortholog); ASSOCIATED WITH pneumoconiosis (ortholog); FOUND IN lysosome (ortholog) NW_004955493 6506449 6514308 - 102011672 AGCD01061118;GBDF01086563;XM_005405152;XM_005405153 XP_005405209;XP_005405210 MODEL 8878857 protein-coding Slfn11 schlafen family member 11 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); RNA endonuclease activity (ortholog); tRNA binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); defense response to virus (ortholog); DNA damage response (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN chromosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955481 9885798 9900330 - 102014452 AGCD01057123;AGCD01057124;GBBH01028655;GBDI01086604;XM_013503414 XP_013358868 MODEL 8706280 protein-coding LOC102027482 nuclear body protein SP140-like protein NW_004955453 4735334 4878501 + 102027482 AGCD01044696;AGCD01044697;AGCD01044698;AGCD01044699;AGCD01044700;AGCD01044701;GBDJ01266082;XM_005395417;XM_005395418;XM_013519812;XM_013519813;XM_013519814;XM_013519815;XM_013519816;XM_013519817;XR_001236159;XR_001236160;XR_001236161;XR_001236162;XR_001236163;XR_001236164;XR_001236165;XR_001236166;XR_001236167;XR_001236168;XR_001236169;XR_001236170;XR_001236171;XR_001236172 XP_005395474;XP_005395475;XP_013375266;XP_013375267;XP_013375268;XP_013375269;XP_013375270;XP_013375271 MODEL 9044362 protein-coding Septin2 septin 2 ENCODES a protein that exhibits enzyme regulator activity (ortholog); identical protein binding (ortholog); INVOLVED IN cilium assembly (ortholog); cytoskeleton organization (ortholog); neuron projection development (ortholog); ASSOCIATED WITH methylmalonic acidemia (ortholog); FOUND IN actin cytoskeleton (ortholog); axoneme (ortholog); cell surface (ortholog) NW_004955542 401081 444304 - 102009878 AGCD01071472;AGCD01071473;AGCD01071474;GBCC01008216;XM_005411134;XM_013508103;XM_013508104;XM_013508105;XM_013508106 XP_005411191;XP_013363557;XP_013363558;XP_013363559;XP_013363560 MODEL 9039327 protein-coding Psmb5 proteasome 20S subunit beta 5 ENCODES a protein that exhibits peptidase activity (ortholog); threonine-type endopeptidase activity (ortholog); INVOLVED IN proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); proteolysis (ortholog); ASSOCIATED WITH Myocardial Ischemia (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955409 37269319 37278957 + 102025768 AGCD01010503;AGCD01010504;GBCE01000116;XM_005377095 XP_005377152 MODEL 8887506 pseudo LOC102023674 leucine-rich repeat-containing protein 57 pseudogene NW_004955411 14171630 14172628 + 102023674 AGCD01011910 MODEL 8729091 pseudo LOC102018271 60S ribosomal protein L9-like NW_004955412 17709908 17710500 + 102018271 AGCD01012916 MODEL 8738985 ncrna LOC102011849 uncharacterized LOC102011849 NW_004955411 18463238 18501880 - 102011849 AGCD01012008;AGCD01012009;GBDI01303319;XR_259937 MODEL 8921295 ncrna LOC102007202 uncharacterized LOC102007202 NW_004955410 35720695 35722354 + 102007202 AGCD01011413;GBDF01055303;XR_259904 MODEL 8940370 protein-coding Tll2 tolloid like 2 INVOLVED IN negative regulation of skeletal muscle tissue growth (ortholog); ASSOCIATED WITH spinal muscular atrophy (ortholog) NW_004955507 2591619 2718161 - 102017483 AGCD01065591;AGCD01065592;GBBH01045943;XM_005407577 XP_005407634 MODEL 8723745 protein-coding LOC102027510 olfactory receptor 10X1 NW_004955468 10435122 10436054 - 102027510 AGCD01052084;XM_005400315 XP_005400372 MODEL 8993903 ncrna LOC102029229 uncharacterized LOC102029229 NW_004955442 2535561 2536351 + 102029229 AGCD01037468;GBDF01159659;XR_001235417 MODEL 8773698 ncrna LOC102026480 uncharacterized LOC102026480 NW_004955548 613590 615733 + 102026480 AGCD01072338;GBDF01168096;XR_001232238 MODEL 9033119 protein-coding Rasa4b RAS p21 protein activator 4B NW_004955456 15114525 15143493 + 102012611 AGCD01046662;GBDI01067417;XM_005396825;XM_005396826;XM_013520629;XM_013520630;XM_013520631;XM_013520632;XM_013520633;XR_001236353;XR_001236354 XP_005396882;XP_005396883;XP_013376083;XP_013376084;XP_013376085;XP_013376086;XP_013376087 MODEL 9038218 protein-coding Wnt1 Wnt family member 1 ENCODES a protein that exhibits cytokine activity (ortholog); protein domain specific binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); astrocyte-dopaminergic neuron signaling (ortholog); bone development (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); atherosclerosis (ortholog); breast cancer (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955500 7797063 7811142 + 102010502 AGCD01063947;AGCD01063948;AGCD01063949;GBDF01147903;XM_005406674 XP_005406731 MODEL 8705314 protein-coding Samm50 SAMM50 sorting and assembly machinery component INVOLVED IN cristae formation (ortholog); protein import into mitochondrial matrix (ortholog); PARTICIPATES IN beta-barrel pathway of mitochondrial protein import; ASSOCIATED WITH metabolic dysfunction-associated steatotic liver disease (ortholog); FOUND IN membrane (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955413 28901124 28925093 + 102020647 AGCD01014572;GBDF01046690;XM_005379452 XP_005379509 MODEL 39132942 snorna SNORA74 Small nucleolar RNA SNORA74 8978226 trna Trnan-guu transfer RNA asparagine (anticodon GUU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978825 AGCD01028556;AGCD01030347;AGCD01043507;AGCD01049456;AGCD01052199;AGCD01062085;AGCD01080156 MODEL 8979326 protein-coding Rhob ras homolog family member B ENCODES a protein that exhibits GDP binding (ortholog); INVOLVED IN cell adhesion (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to ionizing radiation (ortholog); ASSOCIATED WITH Avian Sarcoma (ortholog); breast cancer (ortholog); cerebral palsy (ortholog); FOUND IN cleavage furrow (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955469 2964968 2966998 + 102015099 AGCD01052289;GBCB01076295;GBCQ01002704;XM_005400352 XP_005400409 MODEL 8908392 pseudo LOC102011382 ubiquitin carboxyl-terminal hydrolase 1 pseudogene NW_004955402 52962185 52963700 + 102011382 AGCD01001352 MODEL 9022021 protein-coding Ephb4 EPH receptor B4 ENCODES a protein that exhibits ephrin receptor activity (ortholog); transmembrane receptor protein tyrosine kinase activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell adhesion (ortholog); cell migration involved in sprouting angiogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH arteriovenous malformation (ortholog); Breast Neoplasms (ortholog); cancer (ortholog); FOUND IN plasma membrane (ortholog) NW_004955573 132328 150879 + 102012701 AGCD01074964;GBDK01146486;XM_005413688;XM_013509481 XP_005413745;XP_013364935 MODEL 8771908 protein-coding Sgtb small glutamine rich tetratricopeptide repeat co-chaperone beta ENCODES a protein that exhibits Hsp70 protein binding (ortholog); identical protein binding (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN protein heterooligomerization (ortholog); protein homooligomerization (ortholog) NW_004955446 3374363 3426284 + 102018871 AGCD01040011;AGCD01040012;AGCD01040013;AGCD01040014;AGCD01040015;GBDF01157752;XM_005392623;XM_005392624 XP_005392680;XP_005392681 MODEL 10223554 ncrna LOC106148015 uncharacterized LOC106148015 NW_004955414 18098223 18099260 + 106148015 AGCD01015269;GBDF01220156;XR_001233108 MODEL 8935804 protein-coding LOC102015213 tumor necrosis factor receptor superfamily member 26-like NW_004955422 14742490 14751804 - 102015213 AGCD01022864;GBDK01165152;XM_005384957 XP_005385014 MODEL 9030165 protein-coding LOC102021253 zinc finger protein 426 NW_004955495 883506 889089 - 102021253 AGCD01061658;AGCD01061659;AGCD01061660;GBCE01152430;GBDI01011093;XM_013505048 XP_013360502 MODEL 8806108 protein-coding Prob1 proline rich basic protein 1 ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955418 1163993 1169968 + 102023699 AGCD01018711;AGCD01018712;GBCQ01097583;GBDJ01097373;XM_005382339 XP_005382396 MODEL 9002863 protein-coding Ptprj protein tyrosine phosphatase receptor type J ENCODES a protein that exhibits beta-catenin binding (ortholog); cadherin binding (ortholog); delta-catenin binding (ortholog); INVOLVED IN B cell differentiation (ortholog); blood coagulation (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; platelet-derived growth factor signaling pathway; somatostatin signaling pathway; ASSOCIATED WITH colon carcinoma (ortholog); colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cell junction (ortholog); cell surface (ortholog); cell-cell junction (ortholog) NW_004955422 396266 438792 - 102005815 AGCD01022405;AGCD01022406;GBDJ01233455;GBDJ01239540;XM_013514213 XP_013369667 MODEL 8763927 protein-coding LOC102017908 metallothionein-1E NW_004955433 14376480 14378539 + 102017908 AGCD01031721;AY533220;GBDF01120895;XM_005388357 AAS59423;XP_005388414 MODEL 10115520 ncrna LOC106150029 uncharacterized LOC106150029 NW_004955461 43852 50652 - 106150029 AGCD01048788;GBDF01054958;XR_001236560;XR_001236561 MODEL 9027080 protein-coding Septin3 septin 3 ENCODES a protein that exhibits GTP binding (ortholog); identical protein binding (ortholog); INVOLVED IN protein catabolic process at presynapse (ortholog); FOUND IN presynapse (ortholog); presynaptic membrane (ortholog); septin complex (ortholog) NW_004955413 27381103 27400899 + 102028948 AGCD01014504;GBDJ01106595;XM_005379383;XM_005379384;XM_005379385;XM_005379386 XP_005379440;XP_005379441;XP_005379442;XP_005379443 MODEL 8706693 protein-coding Plscr3 phospholipid scramblase 3 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); lead ion binding (ortholog); INVOLVED IN apoptotic process (ortholog); cellular response to lipopolysaccharide (ortholog); cholesterol homeostasis (ortholog); ASSOCIATED WITH intellectual disability (ortholog); obesity (ortholog); FOUND IN cytosol (ortholog); mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog) NW_004955467 9534462 9539738 + 102016998 AGCD01051516;GBDI01305134;XM_005399507;XM_013522122 XP_005399564;XP_013377576 MODEL 8794472 protein-coding LOC102026132 taste receptor type 2 member 1-like NW_004955504 6925464 6926360 - 102026132 AGCD01064931;XM_005407095 XP_005407152 MODEL 10304110 protein-coding LOC106147189 translation initiation factor IF-2-like NW_004955408 2572464 2584786 + 106147189 AGCD01008014;AGCD01008015;GBDK01002158;XM_013507353 XP_013362807 MODEL 8949560 protein-coding Ky kyphoscoliosis peptidase INVOLVED IN muscle organ development (ortholog); neuromuscular junction development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); myofibrillar myopathy (ortholog); myofibrillar myopathy 7 (ortholog); FOUND IN Z disc (ortholog) NW_004955501 3961603 4005095 + 102021027 AGCD01064106;GBCB01020151;XM_005406786;XM_013505809 XP_005406843;XP_013361263 MODEL 8836021 protein-coding LOC102006115 C-type lectin domain family 7 member A-like NW_004955413 7254513 7276098 - 102006115 AGCD01013806;AGCD01013807;AGCD01013808;GBBH01168364;XM_005378930 XP_005378987 MODEL 39133424 snrna U4 U4 spliceosomal RNA 8971410 pseudo LOC102030635 60S ribosomal protein L7 pseudogene NW_004955418 21688554 21689038 - 102030635 AGCD01019273 MODEL 8701410 protein-coding Trappc5 trafficking protein particle complex subunit 5 FOUND IN TRAPP complex (ortholog) NW_004955563 1600027 1601685 - 102026581 AGCD01074153;GBBH01000859;XM_005413166;XM_005413167;XM_005413168;XM_013509161 XP_005413223;XP_005413224;XP_005413225;XP_013364615 MODEL 8778180 protein-coding Rdh13 retinol dehydrogenase 13 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NADP+) activity (ortholog); INVOLVED IN eye photoreceptor cell development (ortholog); response to high light intensity (ortholog); retina layer formation (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Experimental Liver Cirrhosis (ortholog); Necrosis (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955567 1091636 1108648 + 102007379 AGCD01074459;AGCD01074460;GBBH01076835;XM_005413365;XM_005413366 XP_005413422;XP_005413423 MODEL 8996406 pseudo LOC102009870 deoxycytidine kinase-like NW_004955435 5992632 5993789 - 102009870 AGCD01032903 MODEL 8810340 pseudo LOC102003975 tubulin alpha-1 chain-like NW_004955420 23684889 23685741 + 102003975 AGCD01021253 MODEL 8851735 protein-coding Rasal1 RAS protein activator like 1 INVOLVED IN positive regulation of dendrite extension (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); kidney disease (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955482 9447984 9471852 - 102013722 AGCD01057570;AGCD01057571;GBBH01069782;GBCQ01151933;XM_013503712 XP_013359166 MODEL 8799439 ncrna LOC102024664 uncharacterized LOC102024664 NW_004955414 7606264 7623903 - 102024664 AGCD01014966;GBDF01041443;XR_260162 MODEL 8900586 trna Trnap-agg transfer RNA proline (anticodon AGG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978806 AGCD01015187;AGCD01037806;AGCD01049336;AGCD01056483;AGCD01057606;AGCD01072566 MODEL 8924920 ncrna LOC102008719 uncharacterized LOC102008719 NW_004955474 1262389 1267127 - 102008719 AGCD01054244;AGCD01054245;GBDI01098588;XR_263586 MODEL 8831381 ncrna LOC102011851 uncharacterized LOC102011851 NW_004955412 12945686 12959032 - 102011851 AGCD01012826;GBDF01076106;XR_259986 MODEL 8935612 ncrna LOC102005742 uncharacterized LOC102005742 NW_004955432 18897605 18899874 + 102005742 AGCD01031161;GBDF01006386;XR_261534 MODEL 8827671 protein-coding Sh2d3c SH2 domain containing 3C FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955419 891133 921062 + 102026425 AGCD01019621;AGCD01019622;AGCD01019623;GBDF01146187;XM_005382410 XP_005382467 MODEL 8876979 protein-coding Pex11g peroxisomal biogenesis factor 11 gamma INVOLVED IN peroxisome fission (ortholog); regulation of peroxisome size (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog); protein-containing complex (ortholog) NW_004955563 1737560 1743854 + 102005314 AGCD01074160;GBDF01082696;XM_005413190;XM_005413191;XM_005413192;XM_013509150 XP_005413247;XP_005413248;XP_005413249;XP_013364604 MODEL 9042075 protein-coding LOC102021257 olfactory receptor 7A10-like NW_004955495 8472724 8479391 + 102021257 AGCD01062211;XM_005406179 XP_005406236 MODEL 8867696 ncrna LOC102026481 uncharacterized LOC102026481 NW_004955553 2189516 2191071 + 102026481 AGCD01072930;GBDF01234366;XR_264942 MODEL 8766476 protein-coding LOC102017911 butyrophilin-like protein 1 NW_004955437 927041 935952 - 102017911 AGCD01034174;AGCD01034175;GBCQ01010671;XM_013516773 XP_013372227 MODEL 9023209 ncrna LOC102028818 uncharacterized LOC102028818 NW_004955404 15796916 15846686 + 102028818 AGCD01003549;AGCD01003550;GBDF01250623;XR_259313 MODEL 39132940 snorna SNORA74 Small nucleolar RNA SNORA74 8936293 protein-coding Slfn14 schlafen family member 14 ENCODES a protein that exhibits ribosome binding (ortholog); RNA endonuclease activity (ortholog); INVOLVED IN mRNA catabolic process (ortholog); platelet maturation (ortholog); rRNA catabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); hemorrhagic disease (ortholog); platelet-type bleeding disorder 20 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955481 10037941 10046549 - 102015406 AGCD01057135;GBBH01083245;XM_005402875 XP_005402932 MODEL 8955039 ncrna LOC102027483 uncharacterized LOC102027483 NW_004955453 13365277 13378023 - 102027483 AGCD01044845;GBDF01144620;XR_262731 MODEL 8860125 protein-coding Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate INVOLVED IN B cell homeostasis (ortholog); bone development (ortholog); lipid transport (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 115 (ortholog); Hearing Loss (ortholog); sensorineural hearing loss (ortholog) NW_004955467 12405172 12441490 - 102012082 AGCD01051633;AGCD01051634;AGCD01051635;GBBH01187584;GBCQ01033750;XM_005399685;XM_013522148;XM_013522149 XP_005399742;XP_013377602;XP_013377603 MODEL 8799566 protein-coding Plxna2 plexin A2 ENCODES a protein that exhibits identical protein binding (ortholog); semaphorin receptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); centrosome localization (ortholog); cerebellar granule cell precursor tangential migration (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN plasma membrane (ortholog) NW_004955489 3914137 4116780 + 102027310 AGCD01059895;AGCD01059896;AGCD01059897;GBCE01117243;GBDI01026905;XM_005404545 XP_005404602 MODEL 8819978 protein-coding LOC102026818 vomeronasal type-1 receptor 1-like NW_004955584 631746 632795 + 102026818 AGCD01075951;XM_005414414 XP_005414471 MODEL 8828056 protein-coding Kyat1 kynurenine aminotransferase 1 ENCODES a protein that exhibits cysteine-S-conjugate beta-lyase activity (ortholog); L-glutamine:phenylpyruvate transaminase activity (ortholog); L-kynurenine:2-oxoglutarate transaminase activity (ortholog); INVOLVED IN pyruvate catabolic process (ortholog); response to bacterium (ortholog); PARTICIPATES IN kynurenine metabolic pathway; ASSOCIATED WITH carcinoma (ortholog); Experimental Arthritis (ortholog); Kidney Neoplasms (ortholog); FOUND IN cytosol (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955570 1211950 1260561 - 102010002 AGCD01074799;AGCD01074800;AGCD01074801;AGCD01074802;AGCD01074803;AGCD01074804;AGCD01074805;AGCD01074806;GBDF01082429;XM_005413589;XM_005413590;XM_013509435;XM_013509436 XP_005413646;XP_005413647;XP_013364889;XP_013364890 MODEL 9061272 pseudo LOC102002975 L-lactate dehydrogenase A chain pseudogene NW_004955402 36734047 36736688 - 102002975 AGCD01000933 MODEL 8703164 protein-coding Psmb6 proteasome 20S subunit beta 6 ENCODES a protein that exhibits threonine-type endopeptidase activity (ortholog); INVOLVED IN proteasomal protein catabolic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); regulation of proteasomal protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955467 10220435 10222470 + 102015495 AGCD01051555;GBDJ01010777;XM_005399601 XP_005399658 MODEL 8710761 ncrna LOC102023675 uncharacterized LOC102023675 NW_004955465 5504102 5599648 - 102023675 AGCD01050430;AGCD01050431;GBDF01277920;XR_263237 MODEL 8720060 protein-coding LOC102015215 olfactory receptor 7C2 NW_004955495 8328332 8329291 - 102015215 AGCD01062198;XM_005406105 XP_005406162 MODEL 8987856 protein-coding LOC102024665 uncharacterized LOC102024665 NW_004955470 9908407 9918428 - 102024665 AGCD01052847;GBCQ01154180;XM_005400776;XM_005400777;XR_001237037;XR_001237038;XR_001237039;XR_263482;XR_263483;XR_263485;XR_263486;XR_263487 XP_005400833;XP_005400834 MODEL 8884158 protein-coding Rasal2 RAS protein activator like 2 INVOLVED IN adipose tissue development (ortholog); gene expression (ortholog); multicellular organism growth (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Disease Progression (ortholog); Experimental Neoplasms (ortholog) NW_004955406 17602584 17904611 + 102020977 AGCD01006012;AGCD01006013;AGCD01006014;AGCD01006015;AGCD01006016;GBDF01123106;XM_005374920;XM_005374922;XM_005374926;XM_005374927;XM_013521024;XM_013521034;XM_013521035;XM_013521039;XM_013521043;XM_013521052 XP_005374977;XP_005374979;XP_005374983;XP_005374984;XP_013376478;XP_013376488;XP_013376489;XP_013376493;XP_013376497;XP_013376506 MODEL 8875513 protein-coding Rnf144a ring finger protein 144A ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN pattern recognition receptor signaling pathway (ortholog); protein K6-linked ubiquitination (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); endoplasmic reticulum membrane (ortholog); endosome membrane (ortholog) NW_004955487 1884179 1985559 - 102010592 AGCD01059253;AGCD01059254;AGCD01059255;AGCD01059256;GBDJ01229979;XM_005404351;XM_005404353;XM_005404357;XM_005404360;XM_005404361;XM_013504375;XM_013504376 XP_005404408;XP_005404410;XP_005404414;XP_005404417;XP_005404418;XP_013359829;XP_013359830 MODEL 8749048 protein-coding Sh2b1 SH2B adaptor protein 1 INVOLVED IN cell motility (ortholog); lamellipodium assembly (ortholog); positive regulation of mitotic nuclear division (ortholog); PARTICIPATES IN leptin system pathway; ASSOCIATED WITH chromosome 16p11.2 deletion syndrome, 220-kb (ortholog); obesity (ortholog); Primary Ovarian Failure (ortholog) NW_004955493 6583415 6592690 - 102014577 AGCD01061119;GBBH01065760;XM_005405163;XM_013504844;XM_013504845;XM_013504846;XM_013504847;XM_013504848;XM_013504849 XP_005405220;XP_013360298;XP_013360299;XP_013360300;XP_013360301;XP_013360302;XP_013360303 MODEL 8728037 protein-coding Ephb6 EPH receptor B6 ENCODES a protein that exhibits ATP binding (ortholog); protein kinase activity (ortholog); SH2 domain binding (ortholog); INVOLVED IN activated T cell proliferation (ortholog); positive regulation of T cell costimulation (ortholog); T cell mediated immunity (ortholog); ASSOCIATED WITH malaria (ortholog); myoepithelioma (ortholog); FOUND IN cell surface (ortholog) NW_004955494 812482 820679 + 102003560 AGCD01061385;GBDF01008198;XM_005405381;XM_005405383;XM_013505009;XM_013505010;XM_013505011;XM_013505012 XP_005405438;XP_005405440;XP_013360463;XP_013360464;XP_013360465;XP_013360466 MODEL 8825508 protein-coding Tln1 talin 1 ENCODES a protein that exhibits integrin binding (ortholog); LIM domain binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN cell-substrate junction assembly (ortholog); cortical actin cytoskeleton organization (ortholog); cortical microtubule organization (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; integrin mediated signaling pathway; ASSOCIATED WITH capillary leak syndrome (ortholog); Neoplasm Invasiveness (ortholog); osteoporosis (ortholog); FOUND IN adherens junction (ortholog); centriolar satellite (ortholog); cytosol (ortholog) NW_004955472 568939 603676 + 102007109 AGCD01053341;GBCB01022575;XM_005401002;XM_005401004;XM_013522935 XP_005401059;XP_005401061;XP_013378389 MODEL 8866196 trna Trnap-cgg transfer RNA proline (anticodon CGG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955467;NW_004955442;NW_004955465;NW_004955462 8707836;14202081;13093914;9311560 8707907;14202152;13093985;9311631 +;+;+;- 101978809 AGCD01037806;AGCD01049336;AGCD01050584;AGCD01051466 MODEL 8776082 protein-coding Wnt10a Wnt family member 10A ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); epidermis morphogenesis (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Arthralgia (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); cerebrotendinous xanthomatosis (ortholog); FOUND IN extracellular region (ortholog) NW_004955453 14528373 14540801 - 102030594 AGCD01044868;AGCD01044869;GBDJ01300231;XM_005395620 XP_005395677 MODEL 10101754 protein-coding C2cd4d C2 calcium dependent domain containing 4D NW_004955589 582261 583519 + 106147595 AGCD01076176;GBDI01079516;XM_013509939 XP_013365393 MODEL 8983394 protein-coding Pcyt2 phosphate cytidylyltransferase 2, ethanolamine ENCODES a protein that exhibits ethanolamine-phosphate cytidylyltransferase activity (ortholog); INVOLVED IN phosphatidylethanolamine biosynthetic process (ortholog); PARTICIPATES IN lamivudine pharmacokinetics pathway; ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 82 (ortholog) NW_004955506 1258993 1266108 + 102024143 AGCD01065252;GBDK01076935;XM_005407247;XM_013506061 XP_005407304;XP_013361515 MODEL 8867938 protein-coding LOC102009091 late lactation protein B-like NW_004955513 2501589 2504529 + 102009091 AGCD01066880;GBBH01002386;XM_013506585 XP_013362039 MODEL 9055821 protein-coding Pex12 peroxisomal biogenesis factor 12 ENCODES a protein that exhibits ubiquitin ligase activator activity (ortholog); ubiquitin protein ligase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); peroxisome organization (ortholog); protein import into peroxisome matrix (ortholog); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); peroxisomal biogenesis disorder (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog); ubiquitin ligase complex (ortholog) NW_004955481 10057494 10060492 - 102018397 AGCD01057135;GBDI01354159;XM_013503459 XP_013358913 MODEL 8732843 protein-coding Samsn1 SAM domain, SH3 domain and nuclear localization signals 1 ENCODES a protein that exhibits phosphotyrosine residue binding (ortholog); INVOLVED IN negative regulation of adaptive immune response (ortholog); negative regulation of B cell activation (ortholog); negative regulation of peptidyl-tyrosine phosphorylation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 16329838 16377763 - 102007298 AGCD01007213;AGCD01007214;GBDI01254171;XM_005375567;XM_013503803;XM_013503806;XR_001231017 XP_005375624;XP_013359257;XP_013359260 MODEL 8853668 protein-coding Trappc6b trafficking protein particle complex subunit 6B ASSOCIATED WITH genetic disease (ortholog); neurodevelopmental disorder with microcephaly, epilepsy, and brain atrophy (ortholog) NW_004955409 22117329 22131102 + 102015484 AGCD01010017;AGCD01010018;AGCD01010019;AGCD01010020;GBDF01086623;XM_005376885 XP_005376942 MODEL 8937920 ncrna LOC102027511 uncharacterized LOC102027511 NW_004955414 1129910 1150933 + 102027511 AGCD01014758;GBDK01333280;XR_260148 MODEL 10375218 ncrna LOC106148016 uncharacterized LOC106148016 NW_004955414 27679020 27699406 - 106148016 AGCD01015664;XR_001233112;XR_001233113 MODEL 8788416 ncrna LOC102012223 uncharacterized LOC102012223 NW_004955506 891734 899069 - 102012223 AGCD01065239;AGCD01065240;GBBH01030954;XR_264313 MODEL 8972137 protein-coding LOC102029231 leucine-rich repeat-containing protein 37A-like NW_004955553 49674 107623 - 102029231 AGCD01072830;AGCD01072831;AGCD01072832;AGCD01072833;AGCD01072834;AGCD01072835;AGCD01072836;AGCD01072837;AGCD01072838;GBCQ01086974;XM_013508609 XP_013364063 MODEL 8745285 pseudo LOC102028824 transcription initiation factor IIA subunit 2 pseudogene NW_004955455 10171584 10171910 - 102028824 AGCD01045947 MODEL 8969020 protein-coding LOC102023679 putative olfactory receptor 10D4 NW_004955412 24824375 24824917 - 102023679 AGCD01013127;XM_005378638 XP_005378695 MODEL 8775370 ncrna LOC102019457 uncharacterized LOC102019457 NW_004955676 10316 15752 - 102019457 AGCD01077974;AGCD01077975;GBCE01027582;XR_265182 MODEL 626189211 snorna SNORA80E small nucleolar RNA, H/ACA box 80E 8746899 pseudo LOC102008721 28S ribosomal protein S36, mitochondrial pseudogene NW_004955476 2667352 2667663 - 102008721 AGCD01055231 MODEL 8918116 protein-coding Klhdc8b kelch domain containing 8B INVOLVED IN mitotic cytokinetic process (ortholog); mitotic nuclear division (ortholog); nuclear chromosome segregation (ortholog); ASSOCIATED WITH Hodgkin's lymphoma (ortholog); FOUND IN cellularization cleavage furrow (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955532 1158888 1162710 + 102011144 AGCD01070167;GBCQ01092730;GBDI01121619;XM_013507665 XP_013363119 MODEL 8988531 protein-coding Plscr4 phospholipid scramblase 4 ENCODES a protein that exhibits CD4 receptor binding (ortholog); enzyme binding (ortholog); phospholipid scramblase activity (ortholog); INVOLVED IN calcium activated phosphatidylcholine scrambling (ortholog); calcium activated phosphatidylserine scrambling (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH lung small cell carcinoma (ortholog); sensorineural hearing loss (ortholog); FOUND IN nucleus (ortholog); plasma membrane (ortholog) NW_004955474 11299390 11331982 + 102020330 AGCD01054617;AGCD01054618;GBBH01116620;GBDI01075931;XM_005401439 XP_005401496 MODEL 39133428 snrna U4 U4 spliceosomal RNA 8750880 pseudo LOC102030638 zinc finger protein 385B pseudogene NW_004955421 3863262 3864659 + 102030638 AGCD01021671 MODEL 8720125 protein-coding Sh2d4a SH2 domain containing 4A ENCODES a protein that exhibits phosphatase binding (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955403 43111804 43170344 + 102020738 AGCD01002767;GBDK01136635;GBDK01136639;XM_005373614;XM_005373615 XP_005373671;XP_005373672 MODEL 8959493 protein-coding LOC102021258 uncharacterized LOC102021258 NW_004955498 3334724 3388529 - 102021258 AGCD01062897;AGCD01062898;AGCD01062899;AGCD01062900;XM_005406477 XP_005406534 MODEL 8884105 protein-coding Rasal3 RAS protein activator like 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of Ras protein signal transduction (ortholog); positive regulation of NK T cell proliferation (ortholog); ASSOCIATED WITH acute megakaryocytic leukemia (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of membrane (ortholog); plasma membrane (ortholog) NW_004955495 7795619 7808674 + 102019290 AGCD01062164;AGCD01062165;AGCD01062166;GBCE01135351;GBDK01007096;XM_013505123;XM_013505124 XP_013360577;XP_013360578 MODEL 8734292 ncrna LOC102011385 uncharacterized LOC102011385 NW_004955403 10477798 10481600 + 102011385 AGCD01001922;GBDF01013779;XR_259170 MODEL 8970328 protein-coding Rnf144b ring finger protein 144B ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Endometrial Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955483 7784522 7862917 - 102017773 AGCD01057813;GBCB01075903;GBDJ01133578;XM_005403388;XM_013503838 XP_005403445;XP_013359292 MODEL 8788322 ncrna LOC102003977 uncharacterized LOC102003977 NW_004955492 6357508 6415069 - 102003977 AGCD01060766;GBCQ01139758;XR_264056;XR_264057 MODEL 8790733 protein-coding LOC102018274 Wilms tumor protein 1-interacting protein-like NW_004955466 5534404 5550454 - 102018274 AGCD01050882;GBDF01040845;XM_013521879 XP_013377333 MODEL 8700490 protein-coding Pdap1 PDGFA associated protein 1 ASSOCIATED WITH high grade glioma (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955460 15072667 15083329 - 102010133 AGCD01048768;GBBH01031562;XM_005397946 XP_005398003 MODEL 8774091 protein-coding Sox30 SRY-box transcription factor 30 ENCODES a protein that exhibits beta-catenin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); negative regulation of Wnt signaling pathway (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Liver Metastasis (ortholog); lung adenocarcinoma (ortholog); FOUND IN chromocenter (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955408 11790145 11830426 - 102016785 AGCD01008318;AGCD01008319;GBDF01000048;XM_005376239;XM_013508812 XP_005376296;XP_013364266 MODEL 10281225 ncrna LOC106150030 uncharacterized LOC106150030 NW_004955461 14354856 14355769 + 106150030 AGCD01049055;GBDF01021681;XR_001236564 MODEL 8704512 protein-coding Ncdn neurochondrin INVOLVED IN bone resorption (ortholog); neuron projection development (ortholog); regulation of neuronal synaptic plasticity (ortholog); ASSOCIATED WITH Floating-Harbor syndrome (ortholog); NEURODEVELOPMENTAL DISORDER WITH INFANTILE EPILEPTIC SPASMS (ortholog); schizophrenia (ortholog); FOUND IN axon (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955452 13650016 13659382 + 102019768 AGCD01044429;GBDF01120972;XM_005395148;XM_005395149;XM_005395150;XM_005395151;XM_013519573 XP_005395205;XP_005395206;XP_005395207;XP_005395208;XP_013375027 MODEL 8922566 protein-coding Kyat3 kynurenine aminotransferase 3 ENCODES a protein that exhibits L-kynurenine:2-oxoglutarate transaminase activity (ortholog); L-kynurenine:glyoxylate transaminase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN 2-oxoglutarate metabolic process (ortholog); amino acid metabolic process (ortholog); kynurenic acid biosynthetic process (ortholog); PARTICIPATES IN kynurenine metabolic pathway; FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955423 5340863 5388460 + 102014918 AGCD01023560;GBCQ01007721;XM_005385107;XM_005385108;XM_005385109;XM_005385110;XM_005385111;XM_005385112 XP_005385164;XP_005385165;XP_005385166;XP_005385167;XP_005385168;XP_005385169 MODEL 10264734 protein-coding LOC106146918 taste receptor type 2 member 1-like NW_004955504 6898677 6899568 - 106146918 AGCD01064930;XM_013505869 XP_013361323 MODEL 8978265 pseudo LOC102005743 zinc finger protein 140-like NW_004955515 861668 865164 + 102005743 AGCD01067211;XM_005408920 MODEL 8843816 protein-coding LOC102011853 uncharacterized LOC102011853 NW_004955466 8078031 8135745 + 102011853 AGCD01050979;GBDJ01302620;XM_005399163;XM_005399164;XM_013521878 XP_005399220;XP_005399221;XP_013377332 MODEL 9037325 protein-coding LOC102026483 vomeronasal type-1 receptor 4-like NW_004955558 183363 184295 - 102026483 AGCD01073348;XM_005412729 XP_005412786 MODEL 8861500 protein-coding Rdh14 retinol dehydrogenase 14 ENCODES a protein that exhibits alcohol dehydrogenase (NADP+) activity (ortholog); all-trans-retinol dehydrogenase (NADP+) activity (ortholog); steroid dehydrogenase activity (ortholog); INVOLVED IN retinol metabolic process (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); nucleoplasm (ortholog) NW_004955469 1281391 1287334 - 102009593 AGCD01052251;GBCQ01066491;XM_005400336 XP_005400393 MODEL 8838885 pseudo LOC102007204 IST1 homolog pseudogene NW_004955463 5955659 5975823 - 102007204 AGCD01049650;AGCD01049651;AGCD01049652 MODEL 8938923 protein-coding Plscr5 phospholipid scramblase family member 5 NW_004955474 10855958 10903801 + 102017654 AGCD01054604;GBDF01041495;XM_005401429;XM_013502715 XP_005401486;XP_013358169 MODEL 8712427 protein-coding LOC102026824 uncharacterized LOC102026824 NW_004955451 16663500 16672386 - 102026824 AGCD01043697;GBCQ01187617;XM_013519259;XR_262619;XR_262620 XP_013374713 MODEL 10234109 protein-coding Slfnl1 schlafen like 1 NW_004955537 814859 819238 - 106147270 AGCD01070875;XM_013507793;XM_013507794 XP_013363247;XP_013363248 MODEL 8778371 protein-coding Spns3 SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative) NW_004955467 12447232 12496874 - 102013403 AGCD01051636;GBDJ01304343;XM_005399690;XM_013522150;XM_013522151 XP_005399747;XP_013377604;XP_013377605 MODEL 8966638 protein-coding Ptprk protein tyrosine phosphatase receptor type K ENCODES a protein that exhibits beta-catenin binding (ortholog); gamma-catenin binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cell adhesion (ortholog); cell migration (ortholog); cellular response to reactive oxygen species (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); melanoma (ortholog); Prostatic Neoplasms (ortholog); FOUND IN axon (ortholog); cell junction (ortholog); cell surface (ortholog) NW_004955436 8975742 9371608 - 102012681 AGCD01033755;AGCD01033756;AGCD01033757;AGCD01033758;AGCD01033759;GBBH01167041;XM_013516643 XP_013372097 MODEL 8897289 pseudo LOC102015217 transcription factor BTF3 pseudogene NW_004955500 7977756 7982393 + 102015217 AGCD01063969 MODEL 9040074 protein-coding LOC102024666 uncharacterized LOC102024666 NW_004955471 7974019 7985244 - 102024666 AGCD01053169;XM_013522866 XP_013378320 MODEL 8908140 protein-coding Plxna3 plexin A3 ENCODES a protein that exhibits semaphorin receptor activity (ortholog); INVOLVED IN axon guidance (ortholog); branchiomotor neuron axon guidance (ortholog); facial nerve structural organization (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Childhood Schizophrenia (ortholog); disorder of sexual development (ortholog) NW_004955580 958033 972123 + 102004213 AGCD01075633;AGCD01075634;GBBH01068132;XM_005414203 XP_005414260 MODEL 8779211 ncrna LOC102012226 uncharacterized LOC102012226 NW_004955511 1865704 1875638 + 102012226 AGCD01066381;AGCD01066382;GBDF01188738;XR_264414 MODEL 15036847 trna Trnap-ggg transfer RNA proline (anticodon GGG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978807 8989141 ncrna LOC102009882 uncharacterized LOC102009882 NW_004955545 1976556 1983940 - 102009882 AGCD01071876;AGCD01071877;GBDI01212919;XR_001232185 MODEL 8897661 protein-coding LOC102029233 protein phosphatase inhibitor 2-like NW_004955557 1519587 1522074 + 102029233 AGCD01073298;AGCD01073299;GBDK01309992;XM_013508820 XP_013364274 MODEL 8999836 ncrna LOC102023684 uncharacterized LOC102023684 NW_004955414 15767549 15793627 + 102023684 AGCD01015189;GBDF01221858;XR_260175 MODEL 8904118 pseudo LOC102017915 60S ribosomal protein L22-like NW_004955439 5269080 5272255 + 102017915 AGCD01035727 MODEL 9026124 ncrna LOC102009092 uncharacterized LOC102009092 NW_004955431 13020164 13023563 + 102009092 AGCD01030276;GBDF01210949;XR_261468 MODEL 8937919 pseudo LOC102027486 protein SET-like NW_004955454 5520149 5565936 - 102027486 AGCD01045175;AGCD01045176 MODEL 8720789 pseudo LOC102030641 chromobox protein homolog 3 pseudogene NW_004955422 7000285 7000848 - 102030641 AGCD01022613 MODEL 8994391 pseudo LOC102021259 60S ribosomal protein L36 pseudogene NW_004955424 10966934 10977357 + 102021259 AGCD01024536 MODEL 8755182 protein-coding Pex13 peroxisomal biogenesis factor 13 ENCODES a protein that exhibits transmembrane protein transporter activity (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); cerebral cortex cell migration (ortholog); fatty acid alpha-oxidation (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH adrenoleukodystrophy (ortholog); genetic disease (ortholog); infantile Refsum disease (ortholog); FOUND IN peroxisomal importomer complex (ortholog); peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955424 22799568 22830718 - 102025814 AGCD01024987;AGCD01024988;AGCD01024989;AGCD01024990;GBDK01230828;XM_005385748 XP_005385805 MODEL 8994491 protein-coding Sanbr SANT and BTB domain regulator of CSR ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN isotype switching (ortholog) NW_004955424 22728802 22785374 - 102024931 AGCD01024983;AGCD01024984;AGCD01024985;AGCD01024986;AGCD01024987;GBDI01291851;GBDJ01419693;XM_013514723 XP_013370177 MODEL 8914153 protein-coding Ibsp integrin binding sialoprotein ENCODES a protein that exhibits integrin binding (ortholog); small molecule binding (ortholog); INVOLVED IN bone mineralization (ortholog); cell adhesion (ortholog); cellular response to growth factor stimulus (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Neoplasm Metastasis (ortholog); Osteolysis (ortholog); FOUND IN extracellular region (ortholog); vesicle (ortholog) NW_004955474 2074659 2086289 - 102013823 AGCD01054275;GBCE01002013;XM_005401333;XM_013502793 XP_005401390;XP_013358247 MODEL 8982864 pseudo LOC102006116 28S ribosomal protein S36, mitochondrial pseudogene NW_004955413 12416468 12416769 - 102006116 AGCD01013988 MODEL 8962795 protein-coding Trappc8 trafficking protein particle complex subunit 8 INVOLVED IN collagen biosynthetic process (ortholog); Golgi organization (ortholog); FOUND IN TRAPP complex (ortholog) NW_004955402 19130393 19223019 - 102019001 AGCD01000547;AGCD01000548;AGCD01000549;GBBH01193692;GBDK01235353;XM_005372745;XM_005372747;XR_001231969 XP_005372802;XP_005372804 MODEL 8909239 pseudo LOC102025417 calpain-7 pseudogene NW_004955589 1012898 1013834 - 102025417 AGCD01076189 MODEL 8989405 protein-coding Sh2b2 SH2B adaptor protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); SH2 domain binding (ortholog); signaling adaptor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); antigen receptor-mediated signaling pathway (ortholog); B cell receptor signaling pathway (ortholog); PARTICIPATES IN insulin signaling pathway; FOUND IN actin filament (ortholog); cytoplasm (ortholog); plasma membrane (ortholog) NW_004955456 15253711 15265874 - 102016564 AGCD01046665;AGCD01046666;GBCB01101553;GBDI01137601;XM_013520635 XP_013376089 MODEL 8720305 protein-coding LOC102027512 b(0,+)-type amino acid transporter 1-like NW_004955469 2887053 2935439 + 102027512 AGCD01052288;GBDF01278413;XM_013522632;XM_013522633;XM_013522635;XM_013522636 XP_013378086;XP_013378087;XP_013378089;XP_013378090 MODEL 8811326 protein-coding Pdc phosducin FOUND IN nucleus (ortholog); photoreceptor outer segment (ortholog) NW_004955406 24857791 24873057 - 102013794 AGCD01006209;XM_005375090 XP_005375147 MODEL 10322056 protein-coding Sox4 SRY-box transcription factor 4 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN ascending aorta morphogenesis (ortholog); atrial septum primum morphogenesis (ortholog); cardiac right ventricle morphogenesis (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Asphyxia (ortholog); basal cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955483 5076664 5077059 - 106146545 AGCD01057752;GBDJ01023868;GBDJ01107737;XM_013503841 XP_013359295 MODEL 8832505 protein-coding LOC102019458 disintegrin and metalloproteinase domain-containing protein 21-like NW_004955403 32154362 32157844 - 102019458 AGCD01002431;GBDK01304845;XM_005373526 XP_005373583 MODEL 8705060 pseudo LOC102008726 peptidyl-prolyl cis-trans isomerase FKBP11 pseudogene NW_004955481 3772130 3773131 + 102008726 AGCD01056916 MODEL 10267427 pseudo LOC106146919 taste receptor type 2 member 1-like NW_004955504 6937874 6944909 - 106146919 AGCD01064931;AGCD01064932 MODEL 8827582 protein-coding LOC102023994 olfactory receptor 148-like NW_004955412 24836329 24837261 - 102023994 AGCD01013129;XM_005378639 XP_005378696 MODEL 8881787 protein-coding Nceh1 neutral cholesterol ester hydrolase 1 ENCODES a protein that exhibits phosphate ion binding (ortholog); serine hydrolase activity (ortholog); INVOLVED IN ether lipid metabolic process (ortholog); protein dephosphorylation (ortholog); xenobiotic metabolic process (ortholog); ASSOCIATED WITH disease of cellular proliferation (ortholog); FOUND IN membrane (ortholog) NW_004955420 2666905 2725814 - 102003242 AGCD01020605;AGCD01020606;AGCD01020607;GBCE01007233;XM_005383012;XM_013513556 XP_005383069;XP_013369010 MODEL 39133429 snrna U4 U4 spliceosomal RNA 8921319 protein-coding LOC102011861 vomeronasal type-1 receptor 90-like NW_004955414 14978145 14979125 - 102011861 AGCD01015166;XM_005380440 XP_005380497 MODEL 8958132 protein-coding Rhobtb1 Rho related BTB domain containing 1 ASSOCIATED WITH systemic juvenile rheumatoid arthritis (ortholog) NW_004955425 14299128 14366732 - 102017254 AGCD01025558;AGCD01025559;GBDI01355365;XM_005385941;XM_005385942;XM_013514879 XP_005385998;XP_005385999;XP_013370333 MODEL 8971678 protein-coding Wnt10b Wnt family member 10B INVOLVED IN bone trabecula formation (ortholog); canonical Wnt signaling pathway (ortholog); cellular response to cAMP (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); genetic disease (ortholog); Neoplasm Recurrence, Local (ortholog); FOUND IN extracellular region (ortholog) NW_004955500 7782782 7800281 - 102010818 AGCD01063946;AGCD01063947;AGCD01063948;GBDI01165157;XM_005406675;XM_005406676;XM_005406677;XM_005406678;XM_005406679;XM_013505648 XP_005406732;XP_005406733;XP_005406734;XP_005406735;XP_005406736;XP_013361102 MODEL 9035823 pseudo LOC102026485 zinc finger MYM-type protein 5-like NW_004955443 377238 378070 + 102026485 AGCD01038101 MODEL 8968540 protein-coding Sh2d4b SH2 domain containing 4B NW_004955510 506117 602140 + 102028881 AGCD01066151;AGCD01066152;AGCD01066153;AGCD01066154;AGCD01066155;AGCD01066156;AGCD01066157;GBCE01122178;XM_013506308 XP_013361762 MODEL 8785865 protein-coding Rasd1 ras related dexamethasone induced 1 INVOLVED IN cellular response to nitric oxide (ortholog); intracellular signaling cassette (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955577 452993 454659 + 102018241 AGCD01075396;GBCB01059855;GBDJ01004132;XM_005413972 XP_005414029 MODEL 8873501 protein-coding LOC102003981 cytochrome P450 4F6-like NW_004955495 7714402 7725532 - 102003981 AGCD01062160;GBDF01159203;XM_005406063;XM_013505320;XM_013505321 XP_005406120;XP_013360774;XP_013360775 MODEL 8958761 protein-coding Rnf145 ring finger protein 145 NW_004955408 13169276 13207424 - 102020210 AGCD01008349;AGCD01008350;GBBH01116610;GBDJ01190776;XM_013508847 XP_013364301 MODEL 10162726 protein-coding LOC106150031 translation initiation factor IF-2-like NW_004955461 4786578 4786856 - 106150031 AGCD01048875;GBBH01162760;GBCE01152258;XM_013521327 XP_013376781 MODEL 8913718 ncrna LOC102027490 uncharacterized LOC102027490 NW_004955455 15977356 15979896 - 102027490 AGCD01046125;AGCD01046126;GBDK01223712;XR_001236307;XR_001236308 MODEL 8743980 protein-coding Ephx1 epoxide hydrolase 1 ENCODES a protein that exhibits cis-stilbene-oxide hydrolase activity (ortholog); enzyme binding (ortholog); epoxide hydrolase activity (ortholog); INVOLVED IN arachidonate metabolic process (ortholog); cellular response to glucocorticoid stimulus (ortholog); diol biosynthetic process (ortholog); PARTICIPATES IN carbamazepine pharmacokinetics pathway; phenytoin pharmacodynamics pathway; ASSOCIATED WITH Abnormalities, Drug-Induced (ortholog); Acute Lung Injury (ortholog); acute lymphoblastic leukemia (ortholog); FOUND IN membrane (ortholog) NW_004955520 116363 142983 - 102004192 AGCD01068006;AGCD01068007;AGCD01068008;GBBH01000987;GBDI01022276;XM_013507052 XP_013362506 MODEL 8937311 protein-coding LOC102028825 ral guanine nucleotide dissociation stimulator-like NW_004955407 38544835 38547152 + 102028825 AGCD01007808;GBDI01293385;XM_005375779;XM_013506122 XP_005375836;XP_013361576 MODEL 8813357 protein-coding Tdrd6 tudor domain containing 6 INVOLVED IN germ cell development (ortholog); spermatogenesis (ortholog); spliceosomal snRNP assembly (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); FOUND IN chromatoid body (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955437 11517094 11531816 + 102006707 AGCD01034574;GBDF01081343;XM_005389858;XM_013516994 XP_005389915;XP_013372448 MODEL 626189182 snorna SNORA81 small nucleolar RNA, H/ACA box 81 9025092 protein-coding Ptprm protein tyrosine phosphatase receptor type M ENCODES a protein that exhibits cadherin binding (ortholog); identical protein binding (ortholog); phosphatase activity (ortholog); INVOLVED IN homophilic cell-cell adhesion (ortholog); negative regulation of angiogenesis (ortholog); negative regulation of endothelial cell migration (ortholog); ASSOCIATED WITH pancreatic ductal adenocarcinoma (ortholog); schizophrenia (ortholog); FOUND IN adherens junction (ortholog); cell-cell junction (ortholog); cytoplasm (ortholog) NW_004955402 3243447 3756457 - 102030364 AGCD01000098;AGCD01000099;AGCD01000100;AGCD01000101;AGCD01000102;AGCD01000103;GBBH01229558;GBCE01153361;XM_005372618 XP_005372675 MODEL 8802784 protein-coding LOC102005749 tenascin-X-like NW_004955437 562600 578348 - 102005749 AGCD01034146;AGCD01034147;AGCD01034148;AGCD01034149;GBDI01324923;GBDK01430395;XM_013516899 XP_013372353 MODEL 8910998 protein-coding Klhdc9 kelch domain containing 9 ENCODES a protein that exhibits cyclin binding (ortholog) NW_004955468 12866631 12868380 + 102026414 AGCD01052190;GBDI01224918;XM_005400237 XP_005400294 MODEL 8931996 pseudo LOC102012227 DNA/RNA-binding protein KIN17 pseudogene NW_004955511 978926 980086 + 102012227 AGCD01066350 MODEL 9000119 pseudo LOC102009886 39S ribosomal protein L32, mitochondrial pseudogene NW_004955442 7886469 7887029 + 102009886 AGCD01037628 MODEL 8723613 protein-coding C2cd5 C2 calcium dependent domain containing 5 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); INVOLVED IN insulin receptor signaling pathway (ortholog); intracellular protein transmembrane transport (ortholog); positive regulation of D-glucose import across plasma membrane (ortholog); FOUND IN cell cortex (ortholog); cytoplasmic vesicle membrane (ortholog); cytosol (ortholog) NW_004955413 17883411 17972865 - 102022582 AGCD01014165;AGCD01014166;GBDJ01129965;GBDJ01129976;XM_005379074 XP_005379131 MODEL 8983572 pseudo LOC102029948 germ cell-less protein-like 1 pseudogene NW_004955462 7544814 7550335 - 102029948 AGCD01049306 MODEL 8869251 protein-coding LOC102002978 zinc finger protein 14-like NW_004955607 144382 181560 + 102002978 AGCD01076977;GBCB01041249;XM_013510111;XM_013510112;XM_013510113 XP_013365565;XP_013365566;XP_013365567 MODEL 8899519 pseudo LOC102023690 ubiquitin-40S ribosomal protein S27a pseudogene NW_004955416 646836 651260 - 102023690 AGCD01016816;AGCD01016817;XR_260344 MODEL 8962794 pseudo LOC102018283 RNA-binding protein 34 pseudogene NW_004955475 9524183 9525658 + 102018283 AGCD01055068 MODEL 8739347 protein-coding LOC102007206 histone H2A type 1 NW_004955465 13392074 13392621 - 102007206 AGCD01050607;XM_005398951 XP_005399008 MODEL 39133430 snrna U4 U4 spliceosomal RNA 8720110 protein-coding Rdh5 retinol dehydrogenase 5 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); androstan-3-alpha,17-beta-diol dehydrogenase (NAD+) activity (ortholog); androsterone dehydrogenase [NAD(P)+] activity (ortholog); INVOLVED IN retinoid metabolic process (ortholog); steroid metabolic process (ortholog); PARTICIPATES IN retinoid cycle metabolic pathway; ASSOCIATED WITH Congenital Abnormalities (ortholog); fundus albipunctatus (ortholog); myopia (ortholog); FOUND IN cell body (ortholog); endoplasmic reticulum lumen (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955458 3356324 3361701 + 102020090 AGCD01047296;GBDI01078451;XM_005397255;XM_005397256;XM_005397257 XP_005397312;XP_005397313;XP_005397314 MODEL 8711742 protein-coding Pltp phospholipid transfer protein ENCODES a protein that exhibits ceramide binding (ortholog); cerebroside transfer activity (ortholog); cholesterol transfer activity (ortholog); INVOLVED IN ceramide transport (ortholog); flagellated sperm motility (ortholog); glycolipid transport (ortholog); PARTICIPATES IN reverse cholesterol transport pathway; ASSOCIATED WITH atherosclerosis (ortholog); Coronary Disease (ortholog); dry eye syndrome (ortholog); FOUND IN extracellular region (ortholog); high-density lipoprotein particle (ortholog); nucleus (ortholog) NW_004955445 11384723 11399217 + 102026050 AGCD01039689;AGCD01039690;GBCE01006971;XM_005392402 XP_005392459 MODEL 9012033 protein-coding LOC102021261 uncharacterized LOC102021261 NW_004955504 891729 893066 + 102021261 AGCD01064831;GBDF01150503;XM_013505867 XP_013361321 MODEL 8802618 protein-coding LOC102030645 olfactory receptor 4C5-like NW_004955422 225660 233436 + 102030645 AGCD01022401;XM_013513824 XP_013369278 MODEL 8947406 protein-coding Spo11 SPO11 initiator of meiotic double strand breaks ENCODES a protein that exhibits DNA endonuclease activity (ortholog); INVOLVED IN double-strand break repair involved in meiotic recombination (ortholog); homologous chromosome pairing at meiosis (ortholog); male meiosis I (ortholog); ASSOCIATED WITH spermatogenic failure 3 (ortholog); FOUND IN chromosome (ortholog); chromosome, telomeric region (ortholog) NW_004955445 2088144 2103385 - 102005521 AGCD01039350;GBDF01277074;XM_005392256;XM_005392257;XM_005392258;XM_005392259;XM_013518307;XM_013518308 XP_005392313;XP_005392314;XP_005392315;XP_005392316;XP_013373761;XP_013373762 MODEL 9013998 protein-coding Rasd2 RASD family member 2 ENCODES a protein that exhibits G-protein beta-subunit binding (ortholog); GTP binding (ortholog); phosphatidylinositol 3-kinase binding (ortholog); INVOLVED IN locomotory behavior (ortholog); negative regulation of protein ubiquitination (ortholog); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); FOUND IN plasma membrane (ortholog) NW_004955405 43191530 43196057 + 102009248 AGCD01005602;GBCE01039258;GBDF01077051;XM_005374667 XP_005374724 MODEL 8977688 protein-coding Kynu kynureninase ENCODES a protein that exhibits kynureninase activity (ortholog); protein homodimerization activity (ortholog); pyridoxal phosphate binding (ortholog); INVOLVED IN L-tryptophan catabolic process (ortholog); NAD+ biosynthetic process (ortholog); obsolete L-kynurenine catabolic process (ortholog); PARTICIPATES IN kynurenine metabolic pathway; tryptophan metabolic pathway; ASSOCIATED WITH Catel Manzke syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); hydroxykynureninuria (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955440 9420141 9536767 + 102015154 AGCD01036380;AGCD01036381;AGCD01036382;AGCD01036383;AGCD01036384;GBCQ01101441;XM_005390777;XM_005390778;XM_005390779;XM_013517494;XM_013517495;XM_013517496;XR_001235271;XR_001235272;XR_001235273;XR_001235274 XP_005390834;XP_005390835;XP_005390836;XP_013372948;XP_013372949;XP_013372950 MODEL 8868589 protein-coding Sh2b3 SH2B adaptor protein 3 ENCODES a protein that exhibits phosphate ion binding (ortholog); protein tyrosine kinase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell differentiation (ortholog); cellular response to chemokine (ortholog); cellular response to interleukin-3 (ortholog); PARTICIPATES IN erythropoietin signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); chronic myeloid leukemia (ortholog); colorectal cancer (ortholog) NW_004955482 8079905 8100791 + 102006034 AGCD01057503;GBDI01138139;XM_013503649 XP_013359103 MODEL 8750800 protein-coding LOC102027515 putative olfactory receptor 52P1 NW_004955414 21074063 21075070 - 102027515 AGCD01015405;GBDI01376735;XM_005380074 XP_005380131 MODEL 8929075 pseudo LOC102029236 N-alpha-acetyltransferase 50 pseudogene NW_004955562 1613885 1712966 - 102029236 AGCD01073987;AGCD01073988;AGCD01073989;AGCD01073990;AGCD01073991 MODEL 8752602 protein-coding LOC102019464 uncharacterized LOC102019464 NW_004955405 40216488 40222185 + 102019464 AGCD01005508;GBDF01072121;XM_005374613;XM_013519025 XP_005374670;XP_013374479 MODEL 10317804 ncrna LOC106148017 uncharacterized LOC106148017 NW_004955414 27514764 27552357 + 106148017 AGCD01015663;GBBH01069398;XR_001233116 MODEL 9033489 pseudo LOC102026829 uncharacterized LOC102026829 NW_004955454 5271352 5283301 + 102026829 AGCD01045138;AGCD01045139 MODEL 8939665 protein-coding LOC102017919 olfactory receptor 11G2-like NW_004955550 885332 886303 - 102017919 AGCD01072528;XM_005412039 XP_005412096 MODEL 8955269 pseudo LOC102015219 dnaJ homolog subfamily A member 1 pseudogene NW_004955502 7160071 7161415 + 102015219 AGCD01064431 MODEL 8936013 protein-coding Sh2d5 SH2 domain containing 5 FOUND IN postsynaptic density (ortholog) NW_004955452 1240621 1252088 - 102022453 AGCD01043836;AGCD01043837;GBDF01145516;XM_005394691;XM_013519747;XM_013519748;XM_013519750;XM_013519751;XM_013519752;XM_013519753 XP_005394748;XP_013375201;XP_013375202;XP_013375204;XP_013375205;XP_013375206;XP_013375207 MODEL 8867073 ncrna LOC102006117 uncharacterized LOC102006117 NW_004955468 6251392 6252627 - 102006117 AGCD01051983;GBDF01085640;XR_263393 MODEL 8903601 protein-coding Sap130 Sin3A associated protein 130 INVOLVED IN embryonic placenta development (ortholog); in utero embryonic development (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH congenital heart disease (ortholog); hypoplastic left heart syndrome (ortholog); FOUND IN nuclear speck (ortholog) NW_004955459 2529373 2602864 + 102019034 AGCD01047992;AGCD01047993;GBDI01221722;XM_013521047 XP_013376501 MODEL 8750635 protein-coding Rhobtb2 Rho related BTB domain containing 2 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 64 (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog) NW_004955403 46367390 46390551 + 102016123 AGCD01002856;GBBH01177038;XM_005373692;XM_005373693;XM_013513944 XP_005373749;XP_005373750;XP_013369398 MODEL 9037393 trna Trnap-ugg transfer RNA proline (anticodon UGG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955530;NW_004955449;NW_004955414;NW_004955442;NW_004955550 133690;1433235;15652077;14208532;1505328 133761;1433306;15652148;14208603;1505399 +;+;+;-;+ 101978808 AGCD01015187;AGCD01037806;AGCD01041800;AGCD01069830;AGCD01072578 MODEL 8866110 pseudo LOC102027497 60S ribosomal protein L5 pseudogene NW_004955409 12935012 12936315 + 102027497 AGCD01009579 MODEL 8868489 pseudo LOC102028829 ataxin-3-like NW_004955457 8642531 8660437 - 102028829 AGCD01046914 MODEL 9046582 protein-coding Plxna4 plexin A4 ENCODES a protein that exhibits semaphorin receptor activity (ortholog); INVOLVED IN anterior commissure morphogenesis (ortholog); axon guidance (ortholog); branchiomotor neuron axon guidance (ortholog); FOUND IN cerebellar climbing fiber to Purkinje cell synapse (ortholog) NW_004955410 35281042 35714094 + 102006641 AGCD01011410;AGCD01011411;AGCD01011412;AGCD01011413;GBDF01057223;XM_005377544;XM_005377545;XM_013510647 XP_005377601;XP_005377602;XP_013366101 MODEL 8699556 protein-coding Ephx2 epoxide hydrolase 2 ENCODES a protein that exhibits 10-hydroxy-9-(phosphonooxy)octadecanoate phosphatase activity (ortholog); epoxide hydrolase activity (ortholog); lipid phosphatase activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); dephosphorylation (ortholog); epoxide metabolic process (ortholog); PARTICIPATES IN acetylsalicylic acid pharmacodynamics pathway; antipyrine drug pathway; arachidonic acid metabolic pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Lung Injury (ortholog); atherosclerosis (ortholog); FOUND IN cytosol (ortholog); peroxisome (ortholog) NW_004955403 49999563 50038800 + 102005434 AGCD01002954;AGCD01002955;GBBH01062366;XM_005373744 XP_005373801 MODEL 8825057 protein-coding Sox5 SRY-box transcription factor 5 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN asymmetric neuroblast division (ortholog); cartilage condensation (ortholog); cartilage development (ortholog); ASSOCIATED WITH Asthma-Chronic Obstructive Pulmonary Disease Overlap Syndrome (ortholog); atrial fibrillation (ortholog); autism spectrum disorder (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955413 18831931 19676371 - 102025340 AGCD01014193;AGCD01014194;AGCD01014195;AGCD01014196;AGCD01014197;AGCD01014198;AGCD01014199;AGCD01014200;AGCD01014201;GBDJ01347233;XM_005379082;XM_005379083;XM_005379084;XM_005379086;XM_005379087;XM_005379090;XM_005379093;XM_013511607;XM_013511608;XM_013511609 XP_005379139;XP_005379140;XP_005379141;XP_005379143;XP_005379144;XP_005379147;XP_005379150;XP_013367061;XP_013367062;XP_013367063 MODEL 8999846 protein-coding LOC102023997 uncharacterized protein C11orf91 homolog NW_004955468 4813513 4814537 + 102023997 AGCD01051922;GBDF01002276;XM_005400067;XM_005400068;XM_005400069;XM_013522385 XP_005400124;XP_005400125;XP_005400126;XP_013377839 MODEL 8856041 protein-coding Ptprn protein tyrosine phosphatase receptor type N ENCODES a protein that exhibits GTPase binding (ortholog); spectrin binding (ortholog); ubiquitin-like protein ligase binding (ortholog); INVOLVED IN dense core granule maturation (ortholog); insulin secretion (ortholog); insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH cerebrotendinous xanthomatosis (ortholog); Experimental Diabetes Mellitus (ortholog); type 1 diabetes mellitus (ortholog); FOUND IN axon terminus (ortholog); endosome (ortholog); Golgi apparatus (ortholog) NW_004955453 14126416 14145347 + 102008815 AGCD01044858;GBBH01175455;XM_005395533;XM_005395534;XM_005395537 XP_005395590;XP_005395591;XP_005395594 MODEL 8884636 pseudo LOC102009093 60S ribosomal protein L5-like NW_004955431 17585076 17587986 - 102009093 AGCD01030409 MODEL 8749419 pseudo LOC102026488 lysine-specific demethylase 6A pseudogene NW_004955575 282932 285676 + 102026488 AGCD01075210 MODEL 8730951 protein-coding Ncf1 neutrophil cytosolic factor 1 ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular defense response (ortholog); cellular response to glucose stimulus (ortholog); ASSOCIATED WITH abdominal aortic aneurysm (ortholog); autosomal recessive chronic granulomatous disease 1 (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog) NW_004955456 13353780 13363956 - 102014744 AGCD01046587;GBDI01081905;XM_005396736 XP_005396793 MODEL 8924337 protein-coding Klhl1 kelch like family member 1 INVOLVED IN adult walking behavior (ortholog); cerebellar Purkinje cell layer development (ortholog); dendrite development (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); neuronal cell body (ortholog) NW_004955404 36304862 36696901 + 102029146 AGCD01004158;AGCD01004159;AGCD01004160;AGCD01004161;AGCD01004162;AGCD01004163;AGCD01004164;AGCD01004165;AGCD01004166;AGCD01004167;AGCD01004168;AGCD01004169;AGCD01004170;AGCD01004171;AGCD01004172;AGCD01004173;AGCD01004174;AGCD01004175;AGCD01004176;GBDF01141646;XM_005374194 XP_005374251 MODEL 8929076 pseudo LOC102029950 olfactory receptor 8B3-like NW_004955412 25315754 25333256 - 102029950 AGCD01013143;AGCD01013144;AGCD01013145;AGCD01013146;AGCD01013147 MODEL 8731982 protein-coding LOC102002979 olfactory receptor 4F17-like NW_004955614 313170 316184 - 102002979 AGCD01077239;GBDF01177112;XM_013510137 XP_013365591 MODEL 9033162 protein-coding Pex14 peroxisomal biogenesis factor 14 ENCODES a protein that exhibits beta-tubulin binding (ortholog); identical protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); microtubule anchoring (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; ASSOCIATED WITH genetic disease (ortholog); ovarian cyst (ortholog); peroxisomal biogenesis disorder (ortholog); FOUND IN peroxisomal importomer complex (ortholog); peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955486 2981026 3129721 - 102014788 AGCD01059013;AGCD01059014;AGCD01059015;AGCD01059016;AGCD01059017;AGCD01059018;GBBH01091917;XM_005404016 XP_005404073 MODEL 9033298 protein-coding Slirp SRA stem-loop interacting RNA binding protein ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN flagellated sperm motility (ortholog); mitochondrial mRNA polyadenylation (ortholog); mitochondrion organization (ortholog); ASSOCIATED WITH mitochondrial encephalomyopathy (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); mitochondrial matrix (ortholog) NW_004955438 1556462 1561561 + 102018768 AGCD01034986;GBDF01046525;XM_005390211 XP_005390268 MODEL 8768876 pseudo LOC102003982 glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 pseudogene NW_004955423 23273272 23274390 + 102003982 AGCD01023999 MODEL 8956859 ncrna LOC102023695 uncharacterized LOC102023695 NW_004955416 24064757 24111176 - 102023695 AGCD01017560;GBCE01142447;XR_001233308;XR_001233309;XR_001233310;XR_001233311;XR_001233312;XR_001233313;XR_260416 MODEL 39131449 protein-coding RNF146 ring finger protein 146 8807400 protein-coding Ibtk inhibitor of Bruton tyrosine kinase ENCODES a protein that exhibits protein kinase binding (ortholog); protein tyrosine kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of protein phosphorylation (ortholog); release of sequestered calcium ion into cytosol (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955411 10052584 10132203 - 102010347 AGCD01011770;AGCD01011771;AGCD01011772;GBDJ01272577;XM_005377680;XM_005377681;XM_005377682;XM_005377683;XM_013510860 XP_005377737;XP_005377738;XP_005377739;XP_005377740;XP_013366314 MODEL 8792663 protein-coding Trappc9 trafficking protein particle complex subunit 9 INVOLVED IN cerebral cortex development (ortholog); neuron differentiation (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive intellectual developmental disorder 13 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); TRAPP complex (ortholog) NW_004955461 13498088 14130159 - 102022477 AGCD01049041;AGCD01049042;AGCD01049043;AGCD01049044;AGCD01049045;AGCD01049046;GBCB01060669;XM_013521331;XM_013521332;XM_013521333;XM_013521334;XM_013521335 XP_013376785;XP_013376786;XP_013376787;XP_013376788;XP_013376789 MODEL 8769845 protein-coding LOC102018289 histone H4 NW_004955483 827742 828500 - 102018289 AGCD01057632;XM_013503798 XP_013359252 MODEL 10218799 ncrna LOC106150032 uncharacterized LOC106150032 NW_004955461 8986832 8989194 + 106150032 AGCD01048940;GBDF01075737;XR_001236570 MODEL 8891819 ncrna LOC102026832 uncharacterized LOC102026832 NW_004955455 15892642 15896282 - 102026832 AGCD01046118;AGCD01046119;GBDF01236427;XR_262863 MODEL 8913808 protein-coding LOC102030646 uncharacterized LOC102030646 NW_004955424 2032607 2037218 - 102030646 AGCD01024260;AGCD01024261;GBDJ01203291;XM_005385430;XR_001234140 XP_005385487 MODEL 8839753 ncrna LOC102008729 uncharacterized LOC102008729 NW_004955419 12989057 12990429 + 102008729 AGCD01019990;GBDF01083945;XR_001233562 MODEL 39133738 snorna SNORA84 small nucleolar RNA, H/ACA box 84 10089835 protein-coding LOC106146920 putative uncharacterized protein ENSP00000383407 NW_004955407 16416116 16440422 - 106146920 AGCD01007215;AGCD01007216;AGCD01007217;GBDI01335608;XM_013505892 XP_013361346 MODEL 8924222 protein-coding Tdrd7 tudor domain containing 7 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN germ cell development (ortholog); lens fiber cell differentiation (ortholog); lens morphogenesis in camera-type eye (ortholog); ASSOCIATED WITH cataract (ortholog); cataract 36 (ortholog); genetic disease (ortholog); FOUND IN chromatoid body (ortholog); cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog) NW_004955419 27919664 27983426 - 102025799 AGCD01020450;AGCD01020451;AGCD01020452;GBBH01063289;XM_005382851;XM_013513266;XM_013513267 XP_005382908;XP_013368720;XP_013368721 MODEL 8730030 protein-coding Sh2d6 SH2 domain containing 6 NW_004955424 2040012 2047142 - 102003463 AGCD01024261;GBDI01143647;XM_013514583 XP_013370037 MODEL 9034852 protein-coding L1cam L1 cell adhesion molecule ENCODES a protein that exhibits identical protein binding (ortholog); integrin binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN axon development (ortholog); axon guidance (ortholog); axonal fasciculation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); anxiety disorder (ortholog); aphasia (ortholog); FOUND IN axon (ortholog); axonal growth cone (ortholog); cell surface (ortholog) NW_004955580 548442 561580 - 102020500 AGCD01075610;GBBH01043761;XM_013509717 XP_013365171 MODEL 9020114 protein-coding Sh2d1a SH2 domain containing 1A ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN humoral immune response (ortholog); natural killer cell activation (ortholog); negative regulation of T cell receptor signaling pathway (ortholog); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); genetic disease (ortholog); Holoprosencephaly 13, X-linked (ortholog); FOUND IN cytoplasm (ortholog) NW_004955473 10345407 10370535 - 102017976 AGCD01054093;AGCD01054094;GBCE01037166;XM_005401276 XP_005401333 MODEL 8706301 pseudo LOC102027516 40S ribosomal protein S18-like NW_004955470 5582595 5583466 + 102027516 AGCD01052753 MODEL 8816326 pseudo LOC102030647 transcription initiation factor TFIID subunit 9-like NW_004955424 11371510 11372967 - 102030647 AGCD01024565 MODEL 8847647 protein-coding Bclaf1 BCL2 associated transcription factor 1 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); DNA damage response (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Epidermolysis Bullosa Simplex 5D with Nail Dystrophy (ortholog); Fraser syndrome 3 (ortholog); lung small cell carcinoma (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955439 608849 641005 + 102023745 AGCD01035590;AGCD01035591;GBDF01118482;XM_005390473;XM_005390474;XM_005390475;XM_005390476;XM_005390477;XM_005390478;XM_005390479;XM_013517364;XM_013517365 XP_005390530;XP_005390531;XP_005390532;XP_005390533;XP_005390534;XP_005390535;XP_005390536;XP_013372818;XP_013372819 MODEL 9064812 protein-coding Wnt11 Wnt family member 11 ENCODES a protein that exhibits protein kinase activator activity (ortholog); INVOLVED IN adrenal gland development (ortholog); artery morphogenesis (ortholog); atrial septum development (ortholog); PARTICIPATES IN the Wnt/calcium signaling pathway; Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Abnormalities, Drug-Induced (ortholog); Animal Disease Models (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN cytoplasm (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955414 15674478 15694758 + 102020902 AGCD01015187;AGCD01015188;GBDK01241149;XM_005379875;XM_005379876;XM_013512079 XP_005379932;XP_005379933;XP_013367533 MODEL 8960257 ncrna LOC102025418 uncharacterized LOC102025418 NW_004955450 8582257 8594051 + 102025418 AGCD01042571;AGCD01042572;GBDF01124408;XR_262540 MODEL 10093894 protein-coding Plvap plasmalemma vesicle associated protein ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN developmental process (ortholog); MAPK cascade (ortholog); positive regulation of cellular extravasation (ortholog); ASSOCIATED WITH DIARRHEA 10, PROTEIN-LOSING ENTEROPATHY TYPE (ortholog); genetic disease (ortholog); hepatocellular carcinoma (ortholog); FOUND IN caveola (ortholog); cell surface (ortholog); plasma membrane (ortholog) NW_004955524 885245 895552 + 106146320 AGCD01068722;AGCD01068723;GBCQ01008248;XM_013507239 XP_013362693 MODEL 8743187 protein-coding LOC102021265 secreted and transmembrane protein 1A NW_004955506 823508 832146 + 102021265 AGCD01065236;AGCD01065237;GBDI01197125;GBDJ01319535;XM_013506143 XP_013361597 MODEL 8887386 protein-coding Spocd1 SPOC domain containing 1 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN gene silencing by piRNA-directed DNA methylation (ortholog); spermatogenesis (ortholog); transposable element silencing by piRNA-mediated DNA methylation (ortholog); ASSOCIATED WITH spermatogenic failure 57 (ortholog); FOUND IN nucleus (ortholog) NW_004955452 10192076 10214914 - 102020976 AGCD01044270;AGCD01044271;GBDF01184512;XM_013519461 XP_013374915 MODEL 9016724 pseudo LOC102015221 protein ARMCX6-like NW_004955503 7648675 7650244 + 102015221 AGCD01064797 MODEL 8959835 protein-coding Klhl10 kelch like family member 10 INVOLVED IN cell morphogenesis (ortholog); fertilization (ortholog); homeostasis of number of cells within a tissue (ortholog); ASSOCIATED WITH spermatogenic failure 11 (ortholog); spermatogenic failure 3 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955451 16042128 16047718 + 102007846 AGCD01043649;AGCD01043650;GBDF01006512;XM_005394421 XP_005394478 MODEL 9019310 ncrna LOC102005750 uncharacterized LOC102005750 NW_004955438 21332657 21334526 - 102005750 AGCD01035537;GBDK01039687;XR_261957 MODEL 8809840 ncrna LOC102012234 uncharacterized LOC102012234 NW_004955433 7547240 7568531 + 102012234 AGCD01031573;GBDF01235477;XR_001234708;XR_001234709;XR_001234710 MODEL 8764356 protein-coding Rasef RAS and EF-hand domain containing ENCODES a protein that exhibits GDP binding (ortholog); GTP binding (ortholog); identical protein binding (ortholog); INVOLVED IN zymogen granule exocytosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955530 690748 747415 + 102012359 AGCD01069863;AGCD01069864;GBBH01098179;XM_013507551;XM_013507552;XM_013507553;XM_013507554;XM_013507555;XM_013507556 XP_013363005;XP_013363006;XP_013363007;XP_013363008;XP_013363009;XP_013363010 MODEL 8948060 protein-coding LOC102009890 kallikrein-4-like NW_004955558 2014462 2080060 + 102009890 AGCD01073496;AGCD01073497;AGCD01073498;AGCD01073499;AGCD01073500;AGCD01073501;AGCD01073502;AGCD01073503;AGCD01073504;AGCD01073505;AGCD01073506;AGCD01073507;AGCD01073508;AGCD01073509;XM_013508851 XP_013364305 MODEL 8927838 protein-coding Ica1 islet cell autoantigen 1 ENCODES a protein that exhibits membrane curvature sensor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN regulation of protein-containing complex assembly (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); type 1 diabetes mellitus (ortholog); FOUND IN cytosol (ortholog); dendrite (ortholog); Golgi membrane (ortholog) NW_004955432 15136606 15297415 - 102029102 AGCD01031059;AGCD01031060;AGCD01031061;GBBH01051699;XM_005388097;XM_005388098;XM_005388099;XM_005388100;XM_005388101 XP_005388154;XP_005388155;XP_005388156;XP_005388157;XP_005388158 MODEL 8781136 protein-coding LOC102029238 transmembrane protein 189 NW_004955445 8106169 8127959 + 102029238 AGCD01039561;GBDK01128405;XM_005392318 XP_005392375 MODEL 8739208 pseudo LOC102025063 calmodulin-like NW_004955447 17344080 17344572 - 102025063 AGCD01041118 MODEL 39133333 snrna U4 U4 spliceosomal RNA 8723280 protein-coding LOC102007210 NKG2-D type II integral membrane protein NW_004955413 7623358 7639703 - 102007210 AGCD01013827;GBDI01345487;XM_005378934 XP_005378991 MODEL 8757763 protein-coding Plxnb1 plexin B1 ENCODES a protein that exhibits GTPase activating protein binding (ortholog); semaphorin receptor activity (ortholog); INVOLVED IN inhibitory synapse assembly (ortholog); negative regulation of cell adhesion (ortholog); negative regulation of osteoblast proliferation (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN extracellular region (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955532 471652 499525 - 102024379 AGCD01070126;AGCD01070127;GBDI01012767;XM_005410146;XM_005410147;XM_013507607 XP_005410203;XP_005410204;XP_013363061 MODEL 8786186 ncrna LOC102009094 uncharacterized LOC102009094 NW_004955432 20999224 21001060 + 102009094 AGCD01031213;GBDF01304667;XR_261541 MODEL 9009364 pseudo LOC102002981 non-histone chromosomal protein HMG-14 pseudogene NW_004955633 74576 86858 - 102002981 AGCD01077593;AGCD01077594;AGCD01077595;XM_005415041;XR_265177 MODEL 8754591 protein-coding Rdh8 retinol dehydrogenase 8 ENCODES a protein that exhibits all-trans-retinol dehydrogenase (NAD+) activity (ortholog); INVOLVED IN retinol metabolic process (ortholog); visual perception (ortholog); PARTICIPATES IN retinoid cycle metabolic pathway; retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH Stargardt disease 5 (ortholog) NW_004955495 1388385 1393209 + 102027317 AGCD01061685;GBDJ01396679;XM_005405579 XP_005405636 MODEL 8735993 protein-coding Sox6 SRY-box transcription factor 6 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN astrocyte differentiation (ortholog); brain development (ortholog); cardiac muscle cell differentiation (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); Developmental Disease (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955414 30965626 31532473 - 102027517 AGCD01015742;AGCD01015743;AGCD01015744;AGCD01015745;AGCD01015746;AGCD01015747;AGCD01015748;AGCD01015749;AGCD01015750;AGCD01015751;AGCD01015752;AGCD01015753;AGCD01015754;GBDF01281648;XM_005380342;XM_005380343;XM_005380355;XM_005380356;XM_005380357;XM_013511913;XM_013511914;XM_013511915;XM_013511916;XM_013511917;XM_013511918;XM_013511919;XM_013511920;XM_013511921;XM_013511922;XM_013511923;XM_013511924;XM_013511925;XM_013511926;XM_013511927;XM_013511928;XM_013511929;XM_013511930;XM_013511931;XM_013511932;XM_013511933 XP_005380399;XP_005380400;XP_005380412;XP_005380413;XP_005380414;XP_013367367;XP_013367368;XP_013367369;XP_013367370;XP_013367371;XP_013367372;XP_013367373;XP_013367374;XP_013367375;XP_013367376;XP_013367377;XP_013367378;XP_013367379;XP_013367380;XP_013367381;XP_013367382;XP_013367383;XP_013367384;XP_013367385;XP_013367386;XP_013367387 MODEL 9011820 protein-coding Pex16 peroxisomal biogenesis factor 16 INVOLVED IN ER-dependent peroxisome localization (ortholog); ER-dependent peroxisome organization (ortholog); peroxisome membrane biogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); methylmalonic aciduria due to methylmalonyl-CoA mutase deficiency (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); peroxisomal membrane (ortholog) NW_004955422 2054867 2060871 + 102016483 AGCD01022478;GBDJ01313533;XM_005384058;XM_005384060;XM_005384061 XP_005384115;XP_005384117;XP_005384118 MODEL 8861263 pseudo LOC102003320 UDP-N-acetylhexosamine pyrophosphorylase-like NW_004955460 10516392 10518340 - 102003320 AGCD01048586 MODEL 8821776 ncrna LOC102006121 uncharacterized LOC102006121 NW_004955470 11481867 11487499 + 102006121 AGCD01052889;XR_263505 MODEL 8728497 ncrna LOC102017922 uncharacterized LOC102017922 NW_004955557 454172 479709 - 102017922 AGCD01073244;GBDI01153372;XR_001232319;XR_264980 MODEL 8764021 protein-coding LOC102023698 C-C motif chemokine 23 NW_004955481 10359882 10363841 - 102023698 AGCD01057144;GBDK01013031;XM_005402899;XM_013503335 XP_005402956;XP_013358789 MODEL 8972709 protein-coding Slit1 slit guidance ligand 1 ENCODES a protein that exhibits heparan sulfate proteoglycan binding (ortholog); Roundabout binding (ortholog); INVOLVED IN axon extension involved in axon guidance (ortholog); axon guidance (ortholog); axonogenesis (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); Monomelic Amyotrophy (ortholog); Spinal Cord Injuries (ortholog); FOUND IN extracellular region (ortholog) NW_004955507 3204135 3365319 - 102022625 AGCD01065614;AGCD01065615;AGCD01065616;AGCD01065617;AGCD01065618;AGCD01065619;GBCB01111715;XM_005407596 XP_005407653 MODEL 8921737 protein-coding Sap18 Sin3A associated protein 18 INVOLVED IN negative regulation of mRNA splicing, via spliceosome (ortholog); positive regulation of apoptotic process (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN Hedgehog signaling pathway; FOUND IN ASAP complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955497 1862026 1869974 + 102010920 AGCD01062478;AGCD01062479;GBBH01031880;GBDF01000571;XM_013505506 XP_013360960 MODEL 8909409 trna Trnaq-cug transfer RNA glutamine (anticodon CUG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978823 AGCD01042594;AGCD01050595;AGCD01050600;AGCD01050634;AGCD01051475;AGCD01074498 MODEL 10246376 ncrna LOC106146921 uncharacterized LOC106146921 NW_004955504 695738 702819 + 106146921 AGCD01064826;GBDF01170960;XR_001231551 MODEL 10208758 ncrna LOC106148018 uncharacterized LOC106148018 NW_004955414 27536955 27538260 + 106148018 AGCD01015663;GBDF01181181;XR_001233117 MODEL 8979025 protein-coding Pdcd1 programmed cell death 1 ENCODES a protein that exhibits signaling receptor activity (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of immune response (ortholog); negative regulation of T cell activation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); acute myocarditis (ortholog); anogenital venereal wart (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955542 49290 57747 + 102030000 AGCD01071456;GBBH01229661;XM_005411106 XP_005411163 MODEL 8812028 pseudo LOC102012238 ras GTPase-activating protein-binding protein 2 pseudogene NW_004955526 2838596 2839845 + 102012238 AGCD01069322 MODEL 8886875 pseudo LOC102027518 proteasome subunit beta type-3-like NW_004955473 7828085 7959612 + 102027518 AGCD01054041;AGCD01054042;AGCD01054043;AGCD01054044 MODEL 9007594 pseudo LOC102030648 RNA/RNP complex-1-interacting phosphatase-like NW_004955425 5653355 5654697 + 102030648 AGCD01025352 MODEL 8832104 protein-coding Bclaf3 BCLAF1 and THRAP3 family member 3 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); positive regulation of stem cell population maintenance (ortholog); FOUND IN nucleus (ortholog); spliceosomal complex (ortholog) NW_004955509 383083 435163 - 102004624 AGCD01065931;AGCD01065932;GBDK01028165;XM_005407799;XM_005407800;XM_005407801;XM_013506297;XM_013506298;XM_013506299 XP_005407856;XP_005407857;XP_005407858;XP_013361751;XP_013361752;XP_013361753 MODEL 8715172 protein-coding Rhobtb3 Rho related BTB domain containing 3 ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); small GTPase binding (ortholog); INVOLVED IN male gonad development (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog) NW_004955418 16772363 16839347 - 102028966 AGCD01019128;AGCD01019129;GBCE01159877;GBDK01193526;XM_013512974 XP_013368428 MODEL 8977831 pseudo LOC102018290 transmembrane protein 87B pseudogene NW_004955419 60235 292357 + 102018290 AGCD01019561;AGCD01019562;AGCD01019563;AGCD01019564;AGCD01019565;AGCD01019566;AGCD01019567;AGCD01019568;AGCD01019569;AGCD01019570;AGCD01019571 MODEL 8789539 protein-coding LOC102026839 uncharacterized LOC102026839 NW_004955462 4410247 4416316 - 102026839 AGCD01049223;AGCD01049224;AGCD01049225;GBDF01112142;XM_013521358 XP_013376812 MODEL 8957675 protein-coding LOC102025421 olfactory receptor 11L1-like NW_004955613 215096 234005 - 102025421 AGCD01077204;AGCD01077205;GBDJ01281862;XM_005414967;XR_001232580 XP_005415024 MODEL 8898835 protein-coding Pex19 peroxisomal biogenesis factor 19 ENCODES a protein that exhibits ATPase binding (ortholog); peroxisome membrane class-1 targeting sequence binding (ortholog); protein carrier activity (ortholog); INVOLVED IN establishment of protein localization to peroxisome (ortholog); peroxisome fission (ortholog); peroxisome membrane biogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); peroxisomal biogenesis disorder (ortholog); FOUND IN brush border membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955468 12049043 12057751 - 102016796 AGCD01052140;GBDF01003256;XM_005400203;XM_013522490 XP_005400260;XP_013377944 MODEL 8700804 protein-coding LOC102028162 solute carrier family 22 member 5 NW_004955408 3768414 3799399 + 102028162 AGCD01008076;AGCD01008077;GBCQ01036146;GBCQ01036168;XM_005376099 XP_005376156 MODEL 9047052 pseudo LOC102023999 transcription elongation factor B polypeptide 1 pseudogene NW_004955471 5953821 5955145 - 102023999 AGCD01053115 MODEL 8970189 protein-coding Ephx3 epoxide hydrolase 3 ENCODES a protein that exhibits epoxide hydrolase activity (ortholog); INVOLVED IN epoxide metabolic process (ortholog); ASSOCIATED WITH melanoma (ortholog); Stomach Neoplasms (ortholog); FOUND IN membrane (ortholog) NW_004955495 7995979 8001423 + 102009853 AGCD01062174;GBDK01360091;XM_005406086;XM_013505126;XM_013505127 XP_005406143;XP_013360580;XP_013360581 MODEL 8970204 ncrna LOC102009891 uncharacterized LOC102009891 NW_004955444 753602 758219 - 102009891 AGCD01038683;GBDF01111656;XR_001235508 MODEL 8797074 protein-coding Tdrd9 tudor domain containing 9 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); INVOLVED IN fertilization (ortholog); male meiosis I (ortholog); male meiotic nuclear division (ortholog); ASSOCIATED WITH azoospermia (ortholog); COVID-19 (ortholog); male infertility (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); piP-body (ortholog) NW_004955538 2667219 2749805 + 102020712 AGCD01071136;AGCD01071137;AGCD01071138;GBDF01090041;XM_005410819;XM_005410820;XM_005410821;XM_013507899 XP_005410876;XP_005410877;XP_005410878;XP_013363353 MODEL 8824140 protein-coding Sh2d1b SH2 domain containing 1B INVOLVED IN negative regulation of natural killer cell mediated cytotoxicity (ortholog); peptidyl-tyrosine phosphorylation (ortholog); positive regulation of natural killer cell mediated cytotoxicity (ortholog) NW_004955462 13909266 13934239 + 102013590 AGCD01049435;GBDK01188618;XM_005398275;XR_001236587 XP_005398332 MODEL 9013929 protein-coding Ptprn2 protein tyrosine phosphatase receptor type N2 INVOLVED IN insulin secretion involved in cellular response to glucose stimulus (ortholog); negative regulation of GTPase activity (ortholog); neurotransmitter secretion (ortholog); ASSOCIATED WITH prediabetes syndrome (ortholog); prostate cancer (ortholog); type 1 diabetes mellitus (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog); presynapse (ortholog); secretory granule (ortholog) NW_004955579 366441 862837 - 102006083 AGCD01075546;AGCD01075547;AGCD01075548;AGCD01075549;AGCD01075550;AGCD01075551;AGCD01075552;AGCD01075553;AGCD01075554;AGCD01075555;AGCD01075556;AGCD01075557;GBDF01250942;XM_005414104 XP_005414161 MODEL 8925847 protein-coding Ncf2 neutrophil cytosolic factor 2 ENCODES a protein that exhibits small GTPase binding (ortholog); superoxide-generating NAD(P)H oxidase activity (ortholog); superoxide-generating NADPH oxidase activator activity (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); positive regulation of blood pressure (ortholog); positive regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH Acute Otitis Media; Alzheimer's disease (ortholog); autosomal recessive chronic granulomatous disease 2 (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955406 22355717 22384746 - 102026600 AGCD01006157;GBDJ01215355;XM_005375038;XM_013521507 XP_005375095;XP_013376961 MODEL 8710415 protein-coding Ica1l islet cell autoantigen 1 like INVOLVED IN spermatid development (ortholog); ASSOCIATED WITH coronary artery disease (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955457 11983201 12085870 + 102005670 AGCD01046997;AGCD01046998;AGCD01046999;GBDF01125399;XM_005397050;XM_005397051;XM_005397052;XM_005397053;XM_005397054 XP_005397107;XP_005397108;XP_005397109;XP_005397110;XP_005397111 MODEL 39133334 snrna U4 U4 spliceosomal RNA 8779097 protein-coding Rnf146 ring finger protein 146 ENCODES a protein that exhibits enzyme binding (ortholog); poly-ADP-D-ribose binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; ASSOCIATED WITH Brain Hypoxia-Ischemia (ortholog); osteochondrodysplasia (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955436 8312096 8331648 + 102007587 AGCD01033737;GBDF01002316;GBDJ01177708;XM_005389166 XP_005389223 MODEL 8876895 protein-coding Trarg1 trafficking regulator of GLUT4 (SLC2A4) 1 INVOLVED IN cellular response to insulin stimulus (ortholog); endosome to plasma membrane protein transport (ortholog); glucose import in response to insulin stimulus (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); endomembrane system (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955481 2775426 2789929 + 102029742 AGCD01056884;GBCE01105605;XM_005402650 XP_005402707 MODEL 9019824 protein-coding Wnt16 Wnt family member 16 INVOLVED IN bone remodeling (ortholog); cardiac epithelial to mesenchymal transition (ortholog); keratinocyte differentiation (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; FOUND IN cytoplasm (ortholog); extracellular region (ortholog) NW_004955479 3065312 3077260 + 102007764 AGCD01056290;AGCD01056291;GBCE01032577;XM_005402314 XP_005402371 MODEL 10112153 ncrna LOC106150033 uncharacterized LOC106150033 NW_004955461 9108773 9114933 + 106150033 AGCD01048940;AGCD01048941;GBDF01209602;XR_001236571;XR_001236572 MODEL 9054308 protein-coding LOC102011862 uncharacterized LOC102011862 NW_004955474 8241162 8246129 - 102011862 AGCD01054547;GBDF01264907;XM_013502768 XP_013358222 MODEL 8795795 ncrna LOC102019466 uncharacterized LOC102019466 NW_004955453 10002932 10006876 - 102019466 AGCD01044781;GBDF01278069;XR_001236152 MODEL 9044067 pseudo LOC102021266 zinc finger CCHC-type and RNA-binding motif-containing protein 1 pseudogene NW_004955509 31706 32464 + 102021266 AGCD01065925 MODEL 8973894 protein-coding LOC102009095 carboxylesterase 1D-like NW_004955433 13464493 13497375 - 102009095 AGCD01031692;GBCQ01008179;XM_005388331;XM_005388332 XP_005388388;XP_005388389 MODEL 8753053 pseudo LOC102015222 actin-related protein 3 pseudogene NW_004955427 2758614 2760152 + 102015222 AGCD01026904 MODEL 8983276 protein-coding Rdm1 RAD52 motif containing 1 FOUND IN cytosol (ortholog); nucleolus (ortholog) NW_004955451 15002098 15011338 + 102022039 AGCD01043590;AGCD01043591;GBBH01050938;GBDF01220846;XM_013519359 XP_013374813 MODEL 8756930 ncrna LOC102017923 uncharacterized LOC102017923 NW_004955559 666827 667985 + 102017923 AGCD01073607;GBBH01083168;XR_264997 MODEL 8824737 protein-coding Snorc secondary ossification center associated regulator of chondrocyte maturation INVOLVED IN cartilage development (ortholog); FOUND IN cell periphery (ortholog) NW_004955453 3187624 3192605 - 102012921 AGCD01044653;AGCD01044654;GBBH01177124;XM_013519900 XP_013375354 MODEL 8992318 ncrna LOC102005756 uncharacterized LOC102005756 NW_004955402 5429973 5443199 - 102005756 AGCD01000135;XR_001236384;XR_259029 MODEL 9003770 protein-coding Bco1 beta-carotene oxygenase 1 ENCODES a protein that exhibits beta-carotene 15,15'-dioxygenase activity (ortholog); INVOLVED IN beta-carotene metabolic process (ortholog); carotene catabolic process (ortholog); retinal metabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH Hypercarotenemia and Vitamin A Deficiency, Autosomal Dominant (ortholog) NW_004955522 3985515 4018116 + 102004509 AGCD01068410;AGCD01068411;AGCD01068412;GBBH01095123;XM_005409358 XP_005409415 MODEL 8805379 protein-coding L2hgdh L-2-hydroxyglutarate dehydrogenase ENCODES a protein that exhibits (S)-2-hydroxyglutarate dehydrogenase activity (ortholog); ASSOCIATED WITH 2-hydroxyglutaric aciduria (ortholog); cerebellar ataxia (ortholog); epilepsy (ortholog); FOUND IN membrane (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955409 12485003 12531759 + 102023983 AGCD01009549;AGCD01009550;AGCD01009551;GBBH01069421;XM_005376827 XP_005376884 MODEL 8979767 protein-coding Sh2d7 SH2 domain containing 7 NW_004955450 650339 660567 + 102007289 AGCD01042340;AGCD01042341;GBBH01112313;XM_013518895 XP_013374349 MODEL 8918715 protein-coding LOC102002983 uncharacterized LOC102002983 NW_004955403 53058177 53060011 - 102002983 AGCD01003030;GBDF01004642;GBDF01223597;XM_013514571 XP_013370025 MODEL 8882462 protein-coding LOC102029241 UDP-glucuronosyltransferase 2B31-like NW_004955447 4372365 4390656 + 102029241 AGCD01040714;AGCD01040715;AGCD01040716;XM_005392798 XP_005392855 MODEL 8851259 protein-coding LOC102029951 zinc finger protein 850 NW_004955468 1902794 2180711 - 102029951 AGCD01051786;AGCD01051787;AGCD01051788;AGCD01051789;AGCD01051790;AGCD01051791;AGCD01051792;AGCD01051793;AGCD01051794;AGCD01051795;AGCD01051796;AGCD01051797;AGCD01051798;AGCD01051799;AGCD01051800;GBDJ01213566;XM_013522334 XP_013377788 MODEL 8763257 protein-coding LOC102025065 olfactory receptor 15-like NW_004955581 700753 701637 - 102025065 AGCD01075689;XM_013509729 XP_013365183 MODEL 8772269 pseudo LOC102009892 zinc finger CCCH domain-containing protein 15-like NW_004955566 44899 55696 + 102009892 AGCD01074343 MODEL 9056454 pseudo LOC102012243 ubiquitin-like protein FUBI pseudogene NW_004955538 2573003 2573441 + 102012243 AGCD01071128 MODEL 8975061 protein-coding Plxnb2 plexin B2 ENCODES a protein that exhibits semaphorin receptor activity (ortholog); signaling receptor activity (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN brain development (ortholog); excitatory synapse assembly (ortholog); homophilic cell-cell adhesion (ortholog); FOUND IN plasma membrane (ortholog) NW_004955413 33297617 33314371 - 102025673 AGCD01014662;GBDI01012765;GBDJ01023023;XM_005379555 XP_005379612 MODEL 8924925 pseudo LOC102008732 cytochrome b-c1 complex subunit 7-like NW_004955484 9493540 9493755 - 102008732 AGCD01058418 MODEL 8972168 pseudo LOC102003321 zinc finger protein 64 homolog NW_004955409 16616488 16619136 + 102003321 AGCD01009731 MODEL 8817190 pseudo LOC102006123 short/branched chain specific acyl-CoA dehydrogenase, mitochondrial pseudogene NW_004955415 14660369 14661840 - 102006123 AGCD01016304 MODEL 8782340 protein-coding Sox7 SRY-box transcription factor 7 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN endoderm formation (ortholog); negative regulation of DNA-templated transcription (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH congenital diaphragmatic hernia (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955403 52253816 52259884 - 102024079 AGCD01003003;GBDJ01190984;XM_005373806 XP_005373863 MODEL 8996765 ncrna LOC102023701 uncharacterized LOC102023701 NW_004955419 19326902 19332924 - 102023701 AGCD01020202;AGCD01020203;XR_001233564;XR_260646 MODEL 8956939 ncrna LOC102026490 uncharacterized LOC102026490 NW_004955402 21669619 21746904 - 102026490 AGCD01000592;AGCD01000593;GBDI01356457;XR_001232378;XR_001232383;XR_259060 MODEL 39131310 protein-coding TRAV22 T cell receptor alpha variable 22 8874968 protein-coding Sap25 Sin3A associated protein 25 INVOLVED IN negative regulation of DNA-templated transcription (ortholog); FOUND IN nucleus (ortholog) NW_004955573 328212 329897 + 102021060 AGCD01074975;GBDI01003810;XM_005413719;XM_005413720;XM_005413721 XP_005413776;XP_005413777;XP_005413778 MODEL 8875133 pseudo LOC102026841 60S ribosomal protein L23a pseudogene NW_004955464 6955282 6956459 - 102026841 AGCD01050048 MODEL 10192189 ncrna LOC106146922 uncharacterized LOC106146922 NW_004955504 6818768 6825244 + 106146922 AGCD01064930;GBDI01247136;XR_001231554 MODEL 10391216 protein-coding LOC106148019 uncharacterized LOC106148019 NW_004955414 22090834 22092271 - 106148019 AGCD01015442;GBDJ01420875;XM_013511829 XP_013367283 MODEL 8796947 pseudo LOC102017926 40S ribosomal protein S20 pseudogene NW_004955574 1288578 1289272 - 102017926 AGCD01075172 MODEL 8842986 protein-coding LOC102007211 60S ribosomal protein L9-like NW_004955468 1922431 1924783 + 102007211 AGCD01051787;GBDF01014892;XM_005399914 XP_005399971 MODEL 8840955 protein-coding Plxdc1 plexin domain containing 1 INVOLVED IN spinal cord development (ortholog); ASSOCIATED WITH Colonic Neoplasms (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); extracellular region (ortholog) NW_004955451 13982443 14028235 - 102019131 AGCD01043519;AGCD01043520;AGCD01043521;AGCD01043522;GBBH01005598;GBCQ01054931;XM_013519432 XP_013374886 MODEL 8957718 protein-coding Bco2 beta-carotene oxygenase 2 ENCODES a protein that exhibits beta,beta-carotene-9',10'-cleaving oxygenase activity (ortholog); oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (ortholog); INVOLVED IN carotene catabolic process (ortholog); carotene metabolic process (ortholog); carotenoid metabolic process (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955412 13838260 13872886 + 102029836 AGCD01012846;GBDF01116400;XM_005378119;XM_013511045 XP_005378176;XP_013366499 MODEL 8990026 protein-coding Pdcd10 programmed cell death 10 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN cellular response to anoxia (ortholog); cellular response to leukemia inhibitory factor (ortholog); establishment of Golgi localization (ortholog); ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); cavernous hemangioma (ortholog); Central Nervous System Neoplasms (ortholog); FOUND IN cell periphery (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955448 16866577 16887215 - 102012142 AGCD01041703;GBCB01075940;GBCC01008530;XM_013518655 XP_013374109 MODEL 10192168 ncrna LOC106146639 uncharacterized LOC106146639 NW_004955488 6309185 6373785 - 106146639 AGCD01059657;GBDK01356801;XR_001231168;XR_001231169;XR_001231170;XR_001231171;XR_001231172;XR_001231173;XR_001231174 MODEL 8756984 ncrna LOC102020482 uncharacterized LOC102020482 NW_004955436 4142905 4148903 + 102020482 AGCD01033656;GBDF01080390;XR_001234921 MODEL 8756782 protein-coding Klhl11 kelch like family member 11 NW_004955451 16051145 16055975 - 102008683 AGCD01043650;GBCE01000063;GBDI01066966;XM_013519277 XP_013374731 MODEL 8751678 protein-coding Slc25a31 solute carrier family 25 member 31 ENCODES a protein that exhibits ATP:ADP antiporter activity (ortholog); INVOLVED IN male meiosis I (ortholog); regulation of mitochondrial membrane permeability (ortholog); spermatogenesis (ortholog); FOUND IN membrane (ortholog); mitochondrial inner membrane (ortholog); mitochondrial permeability transition pore complex (ortholog) NW_004955428 13648753 13667133 - 102007921 AGCD01027960;GBDF01052354;XM_005386748 XP_005386805 MODEL 8902660 protein-coding LOC102021267 olfactory receptor 5AL1-like NW_004955511 1538367 1539479 + 102021267 AGCD01066371;XM_005408235 XP_005408292 MODEL 8954381 pseudo LOC102011864 up-regulated during skeletal muscle growth protein 5 pseudogene NW_004955416 8440518 8440842 - 102011864 AGCD01017056;XM_005381302 MODEL 9014562 trna Trnaq-uug transfer RNA glutamine (anticodon UUG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955483;NW_004955465;NW_004955465;NW_004955451 757927;13819250;13329350;12259037 757998;13819321;13329421;12259108 +;+;-;- 101978822 AGCD01043382;AGCD01050600;AGCD01050626;AGCD01057629 MODEL 8992577 protein-coding Pex2 peroxisomal biogenesis factor 2 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); cellular response to reactive oxygen species (ortholog); cholesterol homeostasis (ortholog); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); peroxisomal biogenesis disorder (ortholog); FOUND IN Cdc73/Paf1 complex (ortholog); peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955444 3811972 3830666 + 102015782 AGCD01038797;GBDF01195338;XM_005392068;XM_005392069 XP_005392125;XP_005392126 MODEL 8846083 ncrna LOC102028165 uncharacterized LOC102028165 NW_004955460 6243484 6247411 - 102028165 AGCD01048467;GBDF01025709;XR_263034 MODEL 126903057 snorna SNORD100 small nucleolar RNA, C/D box 100 8731910 protein-coding Ephx4 epoxide hydrolase 4 NW_004955423 2389745 2425036 - 102026760 AGCD01023472;GBDJ01093449;XM_005385060 XP_005385117 MODEL 8872017 ncrna LOC102004356 uncharacterized LOC102004356 NW_004955408 16637908 16665694 - 102004356 AGCD01008442;GBDF01308085;XR_259690 MODEL 8929135 ncrna LOC102030650 uncharacterized LOC102030650 NW_004955501 5257250 5285747 + 102030650 AGCD01064154;GBDF01134315;XR_264254 MODEL 8820137 protein-coding Spock1 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 1 ENCODES a protein that exhibits calcium ion binding (ortholog); cysteine-type endopeptidase inhibitor activity (ortholog); metalloendopeptidase inhibitor activity (ortholog); INVOLVED IN central nervous system neuron differentiation (ortholog); negative regulation of cell-substrate adhesion (ortholog); negative regulation of neuron projection development (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); microcephaly (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); neuromuscular junction (ortholog) NW_004955408 31954622 32465463 - 102003518 AGCD01008837;AGCD01008838;AGCD01008839;AGCD01008840;AGCD01008841;AGCD01008842;GBCB01121360;GBCE01057421;XM_005376592 XP_005376649 MODEL 10184165 ncrna LOC106146923 uncharacterized LOC106146923 NW_004955505 4322526 4323509 + 106146923 AGCD01065102;GBDF01256858;XR_001231569 MODEL 9058366 pseudo LOC102029243 spermatogenesis-associated protein 6 pseudogene NW_004955578 374690 376125 + 102029243 AGCD01075479 MODEL 39133335 snrna U4 U4 spliceosomal RNA 8952132 pseudo LOC102009895 DNA damage-regulated autophagy modulator protein 2 pseudogene NW_004955446 16745148 16746679 - 102009895 AGCD01040349 MODEL 8709730 protein-coding Icam1 intercellular adhesion molecule 1 ENCODES a protein that exhibits integrin binding (ortholog); protein-containing complex binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN acute inflammatory response to antigenic stimulus (ortholog); canonical NF-kappaB signal transduction (ortholog); cell adhesion (ortholog); PARTICIPATES IN eicosanoid signaling pathway; pro-inflammatory cytokine mediated pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); acute kidney failure (ortholog); Acute Lung Injury (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular exosome (ortholog) NW_004955495 1561464 1573282 + 102029873 AGCD01061701;AGCD01061702;AGCD01061703;GBDK01022433;XM_005405586;XM_005405587 XP_005405643;XP_005405644 MODEL 8837504 pseudo LOC102012245 eukaryotic translation initiation factor 5 pseudogene NW_004955542 1250369 1252115 - 102012245 AGCD01071498 MODEL 8752588 ncrna LOC102018291 uncharacterized LOC102018291 NW_004955420 9727856 9731176 + 102018291 AGCD01020761;GBDF01025460;XR_001233744;XR_260688 MODEL 8819659 protein-coding Wnt2 Wnt family member 2 ENCODES a protein that exhibits cytokine activity (ortholog); frizzled binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN atrial cardiac muscle tissue morphogenesis (ortholog); canonical Wnt signaling pathway (ortholog); cardiac epithelial to mesenchymal transition (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH autistic disorder (ortholog); breast cancer (ortholog); breast carcinoma (ortholog); FOUND IN cytoplasm (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955432 22988208 23024530 - 102015880 AGCD01031272;GBCQ01174742;GBDK01118076;XM_013515906 XP_013371360 MODEL 8773625 ncrna LOC102019468 uncharacterized LOC102019468 NW_004955455 8871582 8873817 - 102019468 AGCD01045910;GBDF01190667;XR_262845;XR_262846 MODEL 8820496 pseudo LOC102015223 lupus La protein pseudogene NW_004955428 13211453 13212912 + 102015223 AGCD01027944 MODEL 8949887 protein-coding Rhoc ras homolog family member C INVOLVED IN apical junction assembly (ortholog); mitotic cytokinesis (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH breast cancer (ortholog); Myocardial Ischemia (ortholog); Neoplasm Metastasis (ortholog); FOUND IN cleavage furrow (ortholog); nucleus (ortholog); plasma membrane (ortholog) NW_004955435 16115095 16117736 - 102005962 AGCD01033294;GBBH01000714;GBCQ01011782;XM_005388967 XP_005389024 MODEL 8922686 protein-coding LOC102024001 mas-related G-protein coupled receptor member A-like NW_004955414 33461482 33462480 - 102024001 AGCD01015809;XM_005380535 XP_005380592 MODEL 8944509 protein-coding Rdx radixin ENCODES a protein that exhibits actin binding (ortholog); ATPase binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN apical protein localization (ortholog); barbed-end actin filament capping (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 24 (ortholog); cholestasis (ortholog); FOUND IN adherens junction (ortholog); apical part of cell (ortholog); apical plasma membrane (ortholog) NW_004955412 12100436 12184444 - 102009923 AGCD01012805;AGCD01012806;AGCD01012807;AGCD01012808;AGCD01012809;AGCD01012810;AGCD01012811;AGCD01012812;GBCB01000997;XM_005378052;XM_005378053;XM_013511100;XM_013511101;XM_013511102 XP_005378109;XP_005378110;XP_013366554;XP_013366555;XP_013366556 MODEL 8830953 protein-coding LOC102025422 nucleoside diphosphate kinase B NW_004955451 10731941 10736353 - 102025422 AGCD01043329;AGCD01043330;GBDJ01018363;XM_005394110;XM_005394111 XP_005394167;XP_005394168 MODEL 9019729 protein-coding Pdcd11 programmed cell death 11 ENCODES a protein that exhibits NF-kappaB binding (ortholog); PARTICIPATES IN ribosome biogenesis pathway; FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955485 7110704 7152301 - 102006667 AGCD01058635;AGCD01058636;AGCD01058637;GBDJ01232953;XM_005403810;XM_005403811 XP_005403867;XP_005403868 MODEL 8816438 pseudo LOC102006124 motile sperm domain-containing protein 1 pseudogene NW_004955476 50263 52111 + 102006124 AGCD01055190 MODEL 8840693 protein-coding Sh2d2a SH2 domain containing 2A INVOLVED IN cell population proliferation (ortholog); PARTICIPATES IN Erk5 MAPK signaling pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); multiple sclerosis (ortholog); systemic juvenile rheumatoid arthritis (ortholog) NW_004955545 2881954 2891021 - 102010633 AGCD01071927;GBBH01050829;XM_005411705;XM_005411707;XM_005411708;XM_005411709;XM_005411712;XM_013508210 XP_005411762;XP_005411764;XP_005411765;XP_005411766;XP_005411769;XP_013363664 MODEL 8850433 pseudo LOC102027520 serine/threonine-protein phosphatase 4 regulatory subunit 3B pseudogene NW_004955474 1180810 1182779 - 102027520 AGCD01054241 MODEL 8771278 protein-coding Sh3bgr SH3 domain binding glutamate rich protein NW_004955407 38225827 38265792 + 102026294 AGCD01007799;AGCD01007800;AGCD01007801;AGCD01007802;AGCD01007803;GBCQ01164597;XM_005375770;XM_005375771;XM_005375772 XP_005375827;XP_005375828;XP_005375829 MODEL 8716099 protein-coding L3hypdh trans-L-3-hydroxyproline dehydratase ENCODES a protein that exhibits hydro-lyase activity (ortholog); proline racemase activity (ortholog); trans-L-3-hydroxyproline dehydratase activity (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955466 13196223 13205339 - 102008078 AGCD01051152;GBCQ01072766;XM_005399227;XR_001236806 XP_005399284 MODEL 8716519 pseudo LOC102002984 60S ribosomal protein L8 pseudogene NW_004955403 16745732 16746501 + 102002984 AGCD01002067 MODEL 9034690 protein-coding Tdrkh tudor and KH domain containing INVOLVED IN fertilization (ortholog); male meiotic nuclear division (ortholog); piRNA processing (ortholog); ASSOCIATED WITH azoospermia (ortholog); spinal muscular atrophy (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); pi-body (ortholog) NW_004955589 630989 649936 + 102014846 AGCD01076179;GBDF01288647;XM_005414552;XM_005414553;XM_013509940;XM_013509941;XM_013509942;XM_013509943;XM_013509944 XP_005414609;XP_005414610;XP_013365394;XP_013365395;XP_013365396;XP_013365397;XP_013365398 MODEL 9060513 ncrna LOC102028166 uncharacterized LOC102028166 NW_004955410 778906 813783 - 102028166 AGCD01010598;AGCD01010599;AGCD01010600;AGCD01010601;AGCD01010602;GBDF01207849;XR_001232719 MODEL 8989680 protein-coding LOC102025067 chromosome unknown open reading frame, human C18orf54 NW_004955402 38929921 38950437 + 102025067 AGCD01000972;GBDF01004732;XM_013510824;XM_013510830;XM_013510832 XP_013366278;XP_013366284;XP_013366286 MODEL 8958912 protein-coding LOC102027524 olfactory receptor 3A2 NW_004955481 191279 192226 + 102027524 AGCD01056783;XM_005402551 XP_005402608 MODEL 8753410 pseudo LOC102009099 UDP-glucuronosyltransferase 1-1 pseudogene NW_004955433 9487229 9488826 + 102009099 AGCD01031613 MODEL 9006428 protein-coding Tdrp testis development related protein INVOLVED IN spermatogenesis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955403 58694134 58714440 + 102016875 AGCD01003190;GBBH01208696;XM_005373863;XM_013515063 XP_005373920;XP_013370517 MODEL 8939881 pseudo LOC102026491 vomeronasal type-1 receptor 3-like NW_004955584 613751 626369 - 102026491 AGCD01075950;AGCD01075951 MODEL 8984525 protein-coding Bcor BCL6 corepressor ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); heat shock protein binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); chromatin remodeling (ortholog); heart development (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adenoid cystic carcinoma (ortholog); anterior segment dysgenesis 8 (ortholog); FOUND IN BCOR complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955566 1412540 1510339 - 102008470 AGCD01074359;AGCD01074360;AGCD01074361;AGCD01074362;AGCD01074363;GBBH01126083;XM_005413277;XM_005413278;XM_005413279;XM_005413280;XM_005413281;XM_013509214;XM_013509215;XM_013509216;XM_013509217 XP_005413334;XP_005413335;XP_005413336;XP_005413337;XP_005413338;XP_013364668;XP_013364669;XP_013364670;XP_013364671 MODEL 9057720 protein-coding LOC102005760 phosphatidylinositol-binding clathrin assembly protein-like NW_004955594 504817 535099 - 102005760 AGCD01076429;AGCD01076430;AGCD01076431;AGCD01076432;AGCD01076433;AGCD01076434;GBBH01019273;GBCB01101047;XM_005414676;XM_013510002;XM_013510003 XP_005414733;XP_013365456;XP_013365457 MODEL 9029478 protein-coding Sox8 SRY-box transcription factor 8 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN adipose tissue development (ortholog); astrocyte fate commitment (ortholog); cell fate commitment (ortholog); ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); peripheral nervous system disease (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955442 16236286 16241093 - 102013559 AGCD01037893;GBBH01171342;XM_005391596 XP_005391653 MODEL 9019223 trna Trnar-acg transfer RNA arginine (anticodon ACG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978835 AGCD01010511;AGCD01021398;AGCD01039089;AGCD01050591;AGCD01050597;AGCD01057606;AGCD01057629 MODEL 8968364 ncrna LOC102019469 uncharacterized LOC102019469 NW_004955407 32676882 32682680 - 102019469 AGCD01007680;GBDI01275175;XR_001231132;XR_001231133;XR_001231134 MODEL 8856557 pseudo LOC102026842 eukaryotic translation initiation factor 2-alpha kinase 4 pseudogene NW_004955411 36382048 36388665 + 102026842 AGCD01012472 MODEL 8918691 ncrna LOC102029952 uncharacterized LOC102029952 NW_004955413 25287547 25290767 - 102029952 AGCD01014401;GBDF01226083;XR_260111 MODEL 8832082 protein-coding Wnt2b Wnt family member 2B INVOLVED IN canonical Wnt signaling pathway (ortholog); cellular response to starvation (ortholog); chondrocyte differentiation (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Diarrhea 9 (ortholog); endodermal sinus tumor (ortholog); Failure to Thrive (ortholog); FOUND IN extracellular region (ortholog) NW_004955435 15948262 15962958 + 102003274 AGCD01033291;GBDF01056432;XM_005388958;XM_013516420 XP_005389015;XP_013371874 MODEL 8881773 protein-coding Ncf4 neutrophil cytosolic factor 4 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); superoxide-generating NADPH oxidase activator activity (ortholog); INVOLVED IN superoxide anion generation (ortholog); ASSOCIATED WITH autosomal recessive chronic granulomatous disease 3 (ortholog); chronic granulomatous disease (ortholog); Crohn's disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endosome membrane (ortholog) NW_004955413 23388456 23405121 + 102022804 AGCD01014330;GBDJ01348708;XM_005379170;XM_013511618 XP_005379227;XP_013367072 MODEL 616940633 snorna SNORD102 small nucleolar RNA, C/D box 102 10197946 ncrna LOC106150034 uncharacterized LOC106150034 NW_004955461 1659213 1706221 + 106150034 AGCD01048819;AGCD01048820;GBDF01116645;XR_001236573 MODEL 9012055 protein-coding Plxdc2 plexin domain containing 2 FOUND IN nuclear body (ortholog) NW_004955429 8141253 8566927 - 102021693 AGCD01028617;AGCD01028618;AGCD01028619;AGCD01028620;AGCD01028621;AGCD01028622;GBCE01053820;XM_005386938 XP_005386995 MODEL 10128226 ncrna LOC106146640 uncharacterized LOC106146640 NW_004955488 6226916 6251665 - 106146640 AGCD01059655;XR_001231175;XR_001231176 MODEL 8846916 protein-coding Spock2 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 2 ENCODES a protein that exhibits calcium ion binding (ortholog); extracellular matrix binding (ortholog); glycosaminoglycan binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); extracellular matrix organization (ortholog); positive regulation of cell-substrate adhesion (ortholog) NW_004955437 19494102 19519218 + 102003282 AGCD01034856;GBDK01021743;XM_005390019 XP_005390076 MODEL 8785373 ncrna LOC102023704 uncharacterized LOC102023704 NW_004955486 1426768 1439006 - 102023704 AGCD01058955;GBBH01201228;XR_001231123;XR_001231124;XR_001231125;XR_001231126;XR_001231127;XR_001231128;XR_001231129;XR_001231130;XR_001231131;XR_263938 MODEL 8919876 ncrna LOC102018298 uncharacterized LOC102018298 NW_004955494 7683032 7765368 - 102018298 AGCD01061554;AGCD01061555;GBCC01029716;XR_264118 MODEL 8960705 protein-coding Icam2 intercellular adhesion molecule 2 ENCODES a protein that exhibits integrin binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN cell adhesion mediated by integrin (ortholog); dendritic cell migration (ortholog); leukocyte cell-cell adhesion (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); malignant mesothelioma (ortholog); Stomach Neoplasms (ortholog); FOUND IN cell periphery (ortholog); cleavage furrow (ortholog); microvillus (ortholog) NW_004955478 7846460 7851889 + 102017233 AGCD01055998;GBDJ01213998;XM_005402176 XP_005402233 MODEL 153211019 protein-coding TRBV12-5 T cell receptor beta variable 12-5 8868131 ncrna LOC102021271 uncharacterized LOC102021271 NW_004955433 9333586 9352335 + 102021271 AGCD01031611;GBDF01224018;XR_001234712;XR_261576 MODEL 9056100 protein-coding Klhl12 kelch like family member 12 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN COPII vesicle coating (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); neural crest cell development (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; FOUND IN COPII vesicle coat (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); Cul3-RING ubiquitin ligase complex (ortholog) NW_004955406 38903233 38931756 - 102003090 AGCD01006612;AGCD01006613;GBDJ01278123;XM_005375232;XM_005375233;XM_005375234 XP_005375289;XP_005375290;XP_005375291 MODEL 8862313 ncrna LOC102011865 uncharacterized LOC102011865 NW_004955477 3946286 3949237 + 102011865 AGCD01055577;GBDF01098162;XR_263654 MODEL 10372021 ncrna LOC106148020 uncharacterized LOC106148020 NW_004955414 22087692 22117858 - 106148020 AGCD01015442;AGCD01015443;GBCB01093823;XR_001233118 MODEL 8887013 pseudo LOC102006128 heterogeneous nuclear ribonucleoprotein A3 pseudogene NW_004955417 3954110 3955411 - 102006128 AGCD01017933 MODEL 8726272 protein-coding Otud7b OTU deubiquitinase 7B ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type peptidase activity (ortholog); K48-linked deubiquitinase activity (ortholog); INVOLVED IN in utero embryonic development (ortholog); mucosal immune response (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Weight Loss (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955413 758098 812605 + 102019900 AGCD01013490;AGCD01013491;GBDF01086853;XM_005378701;XM_005378702;XM_005378703;XM_005378704 XP_005378758;XP_005378759;XP_005378760;XP_005378761 MODEL 8782578 pseudo LOC102030654 28S ribosomal protein S36, mitochondrial pseudogene NW_004955510 3211934 3212246 + 102030654 AGCD01066229 MODEL 8793393 protein-coding Sh3bgrl SH3 domain binding glutamate rich protein like ENCODES a protein that exhibits protein-RNA adaptor activity (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN positive regulation of cytoplasmic translational initiation (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955529 1159704 1223222 + 102019318 AGCD01069675;AGCD01069676;AGCD01069677;GBDJ01011359;XM_005410074 XP_005410131 MODEL 8836623 ncrna LOC102029954 uncharacterized LOC102029954 NW_004955414 16743715 16770815 - 102029954 AGCD01015223;AGCD01015224;AGCD01015225;GBDF01221659;XR_001233083 MODEL 8747464 protein-coding Epm2a EPM2A glucan phosphatase, laforin ENCODES a protein that exhibits carbohydrate binding (ortholog); carbohydrate phosphatase activity (ortholog); glycogen binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagy (ortholog); calcium ion transport (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); cataract (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of endoplasmic reticulum membrane (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog) NW_004955436 14925452 14982357 + 102005839 AGCD01033880;AGCD01033881;AGCD01033882;GBBH01222266;XM_005389308 XP_005389365 MODEL 8802878 protein-coding LOC102008750 rho GTPase-activating protein 21-like NW_004955503 2090544 2097475 + 102008750 AGCD01064595;AGCD01064596;XM_013505847 XP_013361301 MODEL 39133336 snrna U4 U4 spliceosomal RNA 8915891 protein-coding LOC102029246 protein THEMIS3-like NW_004955402 3152330 3193245 - 102029246 AGCD01000097;GBDK01003153;XM_005372613 XP_005372670 MODEL 8889144 pseudo LOC102020485 programmed cell death protein 5 pseudogene NW_004955439 176852 177293 - 102020485 AGCD01035581 MODEL 8806784 protein-coding Klhl13 kelch like family member 13 ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); regulation of cytokinesis (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog) NW_004955534 1906783 2127266 + 102018975 AGCD01070513;AGCD01070514;AGCD01070515;AGCD01070516;AGCD01070517;AGCD01070518;AGCD01070519;AGCD01070520;AGCD01070521;AGCD01070522;AGCD01070523;AGCD01070524;AGCD01070525;AGCD01070526;GBDK01285469;XM_005410465;XM_005410466;XM_005410467;XM_005410469;XM_013507708 XP_005410522;XP_005410523;XP_005410524;XP_005410526;XP_013363162 MODEL 8881952 protein-coding LOC102009896 transmembrane protease serine 11F NW_004955447 4757521 4834971 + 102009896 AGCD01040733;GBDF01305457;XM_005392827 XP_005392884 MODEL 8715785 protein-coding Sap30 Sin3A associated protein 30 ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); skeletal muscle cell differentiation (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN histone deacetylase complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955403 33633028 33639271 - 102026062 AGCD01002457;AGCD01002458;GBBH01076242;GBDF01154171;XM_013513303 XP_013368757 MODEL 9014342 ncrna LOC102015224 uncharacterized LOC102015224 NW_004955429 14387394 14393082 + 102015224 AGCD01028781;GBBH01042323;XR_261331 MODEL 9012132 ncrna LOC102024003 uncharacterized LOC102024003 NW_004955416 1130935 1134505 + 102024003 AGCD01016825;GBDF01211129;XR_260345 MODEL 8775986 pseudo LOC102025424 40S ribosomal protein S6 pseudogene NW_004955451 12176705 12177203 - 102025424 AGCD01043377;XM_005394211 MODEL 10147435 ncrna LOC106146505 uncharacterized LOC106146505 NW_004955482 5859239 5863485 + 106146505 AGCD01057352;GBDK01122905;XR_001230961 MODEL 8907721 protein-coding Tead1 TEA domain transcription factor 1 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to retinoic acid (ortholog); embryonic heart tube morphogenesis (ortholog); heart development (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); metabolic dysfunction and alcohol associated liver disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); TEAD-YAP complex (ortholog) NW_004955414 28166562 28341275 + 102014888 AGCD01015678;AGCD01015679;GBDF01287292;XM_013511974;XM_013511975;XM_013511976;XM_013511977;XM_013511978;XM_013511979;XM_013511980;XM_013511981;XM_013511982;XM_013511983 XP_013367428;XP_013367429;XP_013367430;XP_013367431;XP_013367432;XP_013367433;XP_013367434;XP_013367435;XP_013367436;XP_013367437 MODEL 8936224 protein-coding LOC102007212 C-reactive protein NW_004955468 11525824 11527555 - 102007212 AGCD01052134;XM_013522300 XP_013377754 MODEL 8833996 protein-coding Sox9 SRY-box transcription factor 9 ENCODES a protein that exhibits beta-catenin binding (ortholog); bHLH transcription factor binding (ortholog); chromatin binding (ortholog); INVOLVED IN anterior head development (ortholog); aortic valve morphogenesis (ortholog); astrocyte fate commitment (ortholog); ASSOCIATED WITH 46,XX sex reversal 2 (ortholog); 46,XY sex reversal 10 (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955478 941684 945563 - 102020005 AGCD01055751;GBDJ01031941;XM_005402098 XP_005402155 MODEL 8925037 pseudo LOC102019473 40S ribosomal protein S2 pseudogene NW_004955407 37229074 37229776 - 102019473 AGCD01007779 MODEL 39131441 protein-coding TRDC T cell receptor delta constant 10363235 ncrna LOC106146924 uncharacterized LOC106146924 NW_004955505 2458155 2461253 - 106146924 AGCD01064996;GBDF01224410;XR_001231570 MODEL 8886179 protein-coding LOC102003326 histone H2A type 1-J-like NW_004955465 13124247 13124484 + 102003326 AGCD01050588;XM_005399005 XP_005399062 MODEL 9015212 protein-coding Plxnb3 plexin B3 ENCODES a protein that exhibits cell-cell adhesion mediator activity (ortholog); protein domain specific binding (ortholog); Rho GDP-dissociation inhibitor binding (ortholog); INVOLVED IN cell chemotaxis (ortholog); homophilic cell-cell adhesion (ortholog); negative regulation of cell adhesion (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cell surface (ortholog) NW_004955580 482602 495628 + 102016653 AGCD01075607;GBBH01163823;XM_005414143;XM_013509679;XM_013509680;XM_013509681;XM_013509682;XM_013509683;XM_013509684;XM_013509685;XM_013509686;XM_013509687;XR_001232477 XP_005414200;XP_013365133;XP_013365134;XP_013365135;XP_013365136;XP_013365137;XP_013365138;XP_013365139;XP_013365140;XP_013365141 MODEL 150537115 snorna SNORD104 small nucleolar RNA, C/D box 104 8748522 protein-coding LOC102025068 tigger transposable element-derived protein 1-like NW_004955589 929222 930090 + 102025068 AGCD01076185;GBCE01110580;GBDI01331973;XM_013509949 XP_013365403 MODEL 9058326 protein-coding LOC102027528 heterogeneous nuclear ribonucleoprotein C-like NW_004955484 3078454 3087286 + 102027528 AGCD01058153;GBDF01114459;XM_005403466;XM_013503931 XP_005403523;XP_013359385 MODEL 8996389 ncrna LOC102009100 uncharacterized LOC102009100 NW_004955523 130276 134656 - 102009100 AGCD01068435;XR_001231912 MODEL 8822132 protein-coding Slc25a32 solute carrier family 25 member 32 ENCODES a protein that exhibits FAD transmembrane transporter activity (ortholog); INVOLVED IN mitochondrial FAD transmembrane transport (ortholog); PARTICIPATES IN folate cycle metabolic pathway; ASSOCIATED WITH Exercise Intolerance (ortholog); prostate cancer (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955417 27530806 27545103 - 102021443 AGCD01018559;GBBH01025020;XM_013512707 XP_013368161 MODEL 10092716 ncrna LOC106146641 uncharacterized LOC106146641 NW_004955407 5165630 5166845 + 106146641 AGCD01006906;GBDF01123562;XR_001231177 MODEL 9010348 ncrna LOC102008756 uncharacterized LOC102008756 NW_004955429 17376692 17378662 + 102008756 AGCD01028854;GBDF01303361;XR_001234496 MODEL 8796043 protein-coding Pex26 peroxisomal biogenesis factor 26 ENCODES a protein that exhibits ATPase binding (ortholog); protein-containing complex binding (ortholog); protein-membrane adaptor activity (ortholog); INVOLVED IN protein import into peroxisome matrix (ortholog); protein to membrane docking (ortholog); ASSOCIATED WITH adrenoleukodystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN ATPase complex (ortholog); peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955454 6097251 6115430 + 102006311 AGCD01045214;AGCD01045215;AGCD01045216;AGCD01045217;AGCD01045218;GBCE01096655;XM_005395985 XP_005396042 MODEL 10100594 ncrna LOC106146368 uncharacterized LOC106146368 NW_004955476 11640894 11656096 + 106146368 AGCD01055468;GBBH01024349;XR_001230780;XR_001230781 MODEL 8946411 protein-coding Sh3bgrl2 SH3 domain binding glutamate rich protein like 2 ASSOCIATED WITH systemic juvenile rheumatoid arthritis (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955502 7517466 7575560 + 102008749 AGCD01064448;AGCD01064449;AGCD01064450;AGCD01064451;AGCD01064452;GBCE01135638;XM_005406914 XP_005406971 MODEL 8742870 protein-coding Spock3 SPARC (osteonectin), cwcv and kazal like domains proteoglycan 3 ENCODES a protein that exhibits glycosaminoglycan binding (ortholog); metalloendopeptidase inhibitor activity (ortholog); INVOLVED IN negative regulation of endopeptidase activity (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog) NW_004955403 38476251 38870760 + 102009674 AGCD01002591;AGCD01002592;AGCD01002593;AGCD01002594;AGCD01002595;AGCD01002596;AGCD01002597;AGCD01002598;AGCD01002599;AGCD01002600;AGCD01002601;AGCD01002602;AGCD01002603;AGCD01002604;AGCD01002605;AGCD01002606;AGCD01002607;AGCD01002608;AGCD01002609;GBCE01084916;XM_005373579;XM_005373580;XM_005373581 XP_005373636;XP_005373637;XP_005373638 MODEL 8928724 pseudo LOC102017928 cyclin-G1 pseudogene NW_004955448 7013104 7014073 + 102017928 AGCD01041398 MODEL 8773791 pseudo LOC102029250 ADP-ribosylation factor 4 pseudogene NW_004955591 455263 455787 + 102029250 AGCD01076266;XM_005414594 MODEL 8780648 protein-coding LOC102005763 tetratricopeptide repeat protein 30B NW_004955403 19246934 19250365 + 102005763 AGCD01002121;GBDF01044632;XM_005373400 XP_005373457 MODEL 8872458 protein-coding LOC102023706 40S ribosomal protein S26-like NW_004955421 1824606 1825078 - 102023706 AGCD01021606;XM_005383660 XP_005383717 MODEL 8712490 pseudo LOC102004357 transcription elongation factor SPT4-A-like NW_004955457 12370358 12370718 + 102004357 AGCD01047009 MODEL 8954052 ncrna LOC102026843 uncharacterized LOC102026843 NW_004955465 5978418 5980715 - 102026843 AGCD01050436;GBDF01251464;XR_001236723;XR_001236724 MODEL 8703793 pseudo LOC102011867 josephin-1-like NW_004955417 14417553 14418271 + 102011867 AGCD01018204 MODEL 8829381 protein-coding L3mbtl1 L3MBTL histone methyl-lysine binding protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); histone H1 reader activity (ortholog); INVOLVED IN chromatin organization (ortholog); constitutive heterochromatin formation (ortholog); hemopoiesis (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; histone modification pathway; ASSOCIATED WITH breast cancer (ortholog); genetic disease (ortholog); FOUND IN chromatin (ortholog); chromatin lock complex (ortholog); condensed chromosome (ortholog) NW_004955445 13621007 13645809 - 102025953 AGCD01039799;GBDF01306919;GBDK01005004;XM_013518251 XP_013373705 MODEL 9042515 protein-coding LOC102012249 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955546 2009351 2010344 + 102012249 AGCD01072081;XM_013508417 XP_013363871 MODEL 8993851 ncrna LOC102026495 uncharacterized LOC102026495 NW_004955450 11940143 11943156 - 102026495 AGCD01042685;GBDJ01296951;XR_262547 MODEL 8943590 protein-coding Pias2 protein inhibitor of activated STAT 2 ENCODES a protein that exhibits DNA binding (ortholog); nuclear androgen receptor binding (ortholog); nuclear estrogen receptor binding (ortholog); INVOLVED IN androgen receptor signaling pathway (ortholog); DNA-templated transcription (ortholog); endoplasmic reticulum unfolded protein response (ortholog); PARTICIPATES IN androgen signaling pathway; Jak-Stat signaling pathway; FOUND IN nuclear body (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955402 32263616 32358532 - 102004439 AGCD01000814;AGCD01000815;AGCD01000816;AGCD01000817;GBDI01219645;XM_005372880;XM_013510479;XM_013510482;XM_013510483;XM_013510485;XM_013510488;XM_013510490 XP_005372937;XP_013365933;XP_013365936;XP_013365937;XP_013365939;XP_013365942;XP_013365944 MODEL 8838809 trna Trnar-ccg transfer RNA arginine (anticodon CCG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004957365;NW_004955442;NW_004955465 7;14214277;13880906 79;14214349;13880978 +;-;+ 101978836 AGCD01037806;AGCD01050633;AGCD01080761 MODEL 9058040 protein-coding LOC102018299 olfactory receptor 7E24-like NW_004955495 664850 665820 - 102018299 AGCD01061648;XM_005405556 XP_005405613 MODEL 10295339 protein-coding Icam4 intercellular adhesion molecule 4 (Landsteiner-Wiener blood group) ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN cell-cell adhesion mediated by integrin (ortholog); heterotypic cell-cell adhesion (ortholog); leukocyte cell-cell adhesion (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955495 1573444 1575595 + 106146785 AGCD01061703;GBDJ01131667;XM_013505169 XP_013360623 MODEL 15036840 trna Trnar-gcg transfer RNA arginine (anticodon GCG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978838 8858591 protein-coding Bcorl1 BCL6 corepressor like 1 ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Developmental Disabilities (ortholog); hepatocellular carcinoma (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955473 4990974 5054829 - 102010992 AGCD01053963;AGCD01053964;GBCQ01012577;XM_005401251;XM_005401252;XM_005401253;XM_013523072;XM_013523073;XM_013523074;XM_013523075 XP_005401308;XP_005401309;XP_005401310;XP_013378526;XP_013378527;XP_013378528;XP_013378529 MODEL 8863310 ncrna LOC102015225 uncharacterized LOC102015225 NW_004955429 21526676 21528190 + 102015225 AGCD01029005;GBDF01223361;XR_261374 MODEL 8882226 protein-coding Klhl14 kelch like family member 14 FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); neuron projection (ortholog) NW_004955402 19841255 19932774 - 102022762 AGCD01000567;AGCD01000568;GBDJ01172004;XM_005372757;XM_005372758 XP_005372814;XP_005372815 MODEL 8862625 protein-coding LOC102021272 mitochondrial amidoxime reducing component 2 NW_004955520 3003740 3026832 - 102021272 AGCD01068088;GBBH01189979;GBCB01025704;XM_013507064 XP_013362518 MODEL 10208033 ncrna LOC106150035 uncharacterized LOC106150035 NW_004955406 19775774 19777754 - 106150035 AGCD01006089;XR_001236586 MODEL 8855808 pseudo LOC102028170 proteasome assembly chaperone 2 pseudogene NW_004955410 31404962 31425312 - 102028170 AGCD01011323;AGCD01011324 MODEL 8788331 ncrna LOC102005769 uncharacterized LOC102005769 NW_004955405 37792705 37803781 - 102005769 AGCD01005459;AGCD01005460;GBBH01012524;XR_259443 MODEL 8849141 protein-coding Nck1 NCK adaptor protein 1 ENCODES a protein that exhibits ephrin receptor binding (ortholog); eukaryotic initiation factor eIF2 binding (ortholog); molecular condensate scaffold activity (ortholog); INVOLVED IN actin filament organization (ortholog); antiviral innate immune response (ortholog); cell migration (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); nephrotic syndrome (ortholog); proteinuria (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955501 1867956 1963091 - 102016727 AGCD01064064;AGCD01064065;GBDF01125073;XM_005406775;XM_005406776;XM_005406777;XM_013505795;XM_013505796 XP_005406832;XP_005406833;XP_005406834;XP_013361249;XP_013361250 MODEL 8902431 ncrna LOC102017938 uncharacterized LOC102017938 NW_004955667 50137 52914 - 102017938 AGCD01077927;AGCD01077928;GBDI01252369;XR_265181 MODEL 8819341 protein-coding Otulin OTU deubiquitinase with linear linkage specificity ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); cysteine-type peptidase activity (ortholog); INVOLVED IN innate immune response (ortholog); negative regulation of inflammatory response (ortholog); nucleotide-binding oligomerization domain containing 2 signaling pathway (ortholog); ASSOCIATED WITH autosomal dominant autoinflammation, panniculitis, and dermatosis syndrome (ortholog); autosomal recessive autoinflammation, panniculitis, and dermatosis syndrome (ortholog); immunodeficiency 107 (ortholog); FOUND IN cytoplasm (ortholog); LUBAC complex (ortholog) NW_004955426 3953852 3982532 + 102004732 AGCD01026086;AGCD01026087;GBCE01045026;GBDJ01020180;XM_013514962 XP_013370416 MODEL 8931036 pseudo LOC102030656 keratin, type I cytoskeletal 18-like NW_004955430 11130755 11132030 + 102030656 AGCD01029441;XR_261427 MODEL 10256798 ncrna LOC106146925 uncharacterized LOC106146925 NW_004955505 6647464 6659761 + 106146925 AGCD01065180;GBDF01139869;XR_001231572 MODEL 8748091 ncrna LOC102029956 uncharacterized LOC102029956 NW_004955470 10576188 10577281 + 102029956 AGCD01052871;GBDF01055047;XR_263492 MODEL 8807231 protein-coding Epm2aip1 EPM2A interacting protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of glycogen (starch) synthase activity (ortholog); positive regulation of glycogen biosynthetic process (ortholog); response to insulin (ortholog); ASSOCIATED WITH hereditary nonpolyposis colorectal cancer type 2 (ortholog); Lynch syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of endoplasmic reticulum membrane (ortholog); nucleus (ortholog) NW_004955421 3882486 3889851 - 102005049 AGCD01021672;GBDI01180311;XM_005383692 XP_005383749 MODEL 8960262 protein-coding LOC102026845 solute carrier family 2, facilitated glucose transporter member 3 NW_004955413 6592400 6676226 - 102026845 AGCD01013757;AGCD01013758;AGCD01013759;AGCD01013760;AGCD01013761;AGCD01013762;AGCD01013763;AGCD01013764;AGCD01013765;AGCD01013766;AGCD01013767;AGCD01013768;GBDF01003887;GBDJ01141163;XM_005378907 XP_005378964 MODEL 8837927 pseudo LOC102002985 nucleophosmin pseudogene NW_004955451 90063 90680 - 102002985 AGCD01042917 MODEL 8940352 protein-coding Sap30bp SAP30 binding protein ENCODES a protein that exhibits cyclin-dependent protein serine/threonine kinase regulator activity (ortholog); INVOLVED IN regulation of mRNA splicing, via spliceosome (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955506 6535566 6574690 - 102016620 AGCD01065430;AGCD01065431;AGCD01065432;GBDI01223301;XM_005407492;XM_005407493;XM_013505977 XP_005407549;XP_005407550;XP_013361431 MODEL 39131450 protein-coding WNT3 Wnt family member 3 8978887 pseudo LOC102025430 transcription intermediary factor 1-alpha pseudogene NW_004955405 25278212 25279816 - 102025430 AGCD01005174 MODEL 8751648 pseudo LOC102006131 polypeptide N-acetylgalactosaminyltransferase 11 pseudogene NW_004955418 29489392 29494643 + 102006131 AGCD01019466;AGCD01019467 MODEL 8908363 protein-coding Pex3 peroxisomal biogenesis factor 3 ENCODES a protein that exhibits lipid binding (ortholog); INVOLVED IN peroxisome membrane biogenesis (ortholog); peroxisome organization (ortholog); protein import into peroxisome membrane (ortholog); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); peroxisomal biogenesis disorder (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); peroxisomal membrane (ortholog) NW_004955436 16918259 16956242 - 102009213 AGCD01033936;AGCD01033937;AGCD01033938;GBDJ01025650;XM_005389251;XM_013516645 XP_005389308;XP_013372099 MODEL 8723537 protein-coding Sh3bgrl3 SH3 domain binding glutamate rich protein like 3 ENCODES a protein that exhibits glutathione transferase activity (ortholog); INVOLVED IN cytoskeleton organization (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog); ruffle membrane (ortholog) NW_004955452 5683276 5684760 + 102015367 AGCD01044051;GBDF01000998;XM_005394851 XP_005394908 MODEL 8863437 ncrna LOC102019478 uncharacterized LOC102019478 NW_004955409 23587939 23595263 - 102019478 AGCD01010068;GBDI01355144;XR_001232654 MODEL 8907598 pseudo LOC102007214 treacle protein pseudogene NW_004955413 22801161 22804226 + 102007214 AGCD01014317 MODEL 8841831 protein-coding Bcr BCR activator of RhoGEF and GTPase ENCODES a protein that exhibits enzyme binding (ortholog); GTPase activator activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); activation of GTPase activity (ortholog); brain development (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); Blast Crisis (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955455 7598794 7727386 + 102026502 AGCD01045862;GBDF01188592;GBDI01355626;XM_005396371 XP_005396428 MODEL 8854816 protein-coding Sp1 Sp1 transcription factor ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN cellular response to estrogen stimulus (ortholog); cellular response to insulin stimulus (ortholog); cellular response to wortmannin (ortholog); PARTICIPATES IN forkhead class A signaling pathway; hypoxia inducible factor pathway; interleukin-4 signaling pathway; ASSOCIATED WITH Carotid Artery Injuries (ortholog); Colorectal Neoplasms (ortholog); Disease Progression (ortholog); FOUND IN chromatin (ortholog); euchromatin (ortholog); nucleoplasm (ortholog) NW_004955458 644435 677360 + 102020425 AGCD01047144;AGCD01047145;AGCD01047146;AGCD01047147;GBCE01004928;XM_005397176;XM_013520955;XM_013520956 XP_005397233;XP_013376409;XP_013376410 MODEL 9021666 protein-coding Trdmt1 tRNA aspartic acid methyltransferase 1 ENCODES a protein that exhibits tRNA (cytidine-N5)-methyltransferase activity (ortholog); tRNA methyltransferase activity (ortholog); INVOLVED IN response to amphetamine (ortholog); tRNA methylation (ortholog); tRNA modification (ortholog); FOUND IN cytoplasm (ortholog) NW_004955429 10741512 10774268 + 102028115 AGCD01028679;GBCE01009529;XM_005386963;XM_005386964 XP_005387020;XP_005387021 MODEL 39133337 snrna U4 U4 spliceosomal RNA 39133406 snorna SNORD105 small nucleolar RNA, C/D box 105 8789953 protein-coding L3mbtl2 L3MBTL histone methyl-lysine binding protein 2 ENCODES a protein that exhibits histone binding (ortholog); histone H4K20me1 reader activity (ortholog); histone H4K20me2 reader activity (ortholog); INVOLVED IN chromatin organization (ortholog); ectoderm development (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH medulloblastoma (ortholog); FOUND IN nucleus (ortholog) NW_004955413 26831065 26847638 + 102016367 AGCD01014482;GBDF01122961;XM_005379342;XM_013511353 XP_005379399;XP_013366807 MODEL 9013545 protein-coding LOC102020486 protein FAM156A/FAM156B-like NW_004955543 3463624 3470902 + 102020486 AGCD01071691;GBDK01280853;XM_005411364 XP_005411421 MODEL 8886399 protein-coding LOC102009898 prolactin-like NW_004955576 934768 939343 + 102009898 AGCD01075348;XM_013509612 XP_013365066 MODEL 8730835 pseudo LOC102012250 bromodomain-containing protein 7-like NW_004955441 5921864 5922609 - 102012250 AGCD01036892 MODEL 8878597 pseudo LOC102009101 DNA-directed RNA polymerases I, II, and III subunit RPABC1 pseudogene NW_004955434 8689984 8692539 - 102009101 AGCD01032262 MODEL 8991955 protein-coding Slc25a33 solute carrier family 25 member 33 ENCODES a protein that exhibits pyrimidine nucleotide transmembrane transporter activity (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); cellular response to insulin-like growth factor stimulus (ortholog); mitochondria-nucleus signaling pathway (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955486 3905001 3921501 - 102022298 AGCD01059044;GBBH01118527;GBCB01072973;XM_013504167 XP_013359621 MODEL 8727687 protein-coding LOC102017939 olfactory receptor 6C75-like NW_004956324 2385 3341 + 102017939 AGCD01079433;XM_005415195 XP_005415252 MODEL 10132717 protein-coding LOC106148021 atherin-like NW_004955414 793514 796090 + 106148021 AGCD01014747;GBDJ01010043;XM_013511834 XP_013367288 MODEL 10126292 ncrna LOC106146369 uncharacterized LOC106146369 NW_004955476 11659577 11685488 - 106146369 AGCD01055468;AGCD01055469;AGCD01055470;AGCD01055471;AGCD01055472;XR_001230782 MODEL 9033586 trna Trnar-ccu transfer RNA arginine (anticodon CCU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955553;NW_004955553;NW_004955442;NW_004955442;NW_004955494 1884364;1885977;14211807;14190493;3729252 1884436;1886049;14211879;14190565;3729324 +;+;-;-;- 101978840 AGCD01037805;AGCD01037806;AGCD01061481;AGCD01072903 MODEL 8878486 protein-coding Pias3 protein inhibitor of activated STAT 3 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); NF-kappaB binding (ortholog); potassium channel regulator activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of gene expression (ortholog); negative regulation of osteoclast differentiation (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; Jak-Stat signaling pathway; sumoylation pathway; ASSOCIATED WITH Uterine Cervical Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955568 227603 237396 + 102006402 AGCD01074506;GBDF01090380;XM_005413436;XM_005413437 XP_005413493;XP_005413494 MODEL 8822797 protein-coding Tead2 TEA domain transcription factor 2 ENCODES a protein that exhibits disordered domain specific binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cellular response to retinoic acid (ortholog); embryonic heart tube morphogenesis (ortholog); hippo signaling (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN nucleoplasm (ortholog); TEAD-YAP complex (ortholog); transcription regulator complex (ortholog) NW_004955559 1450706 1465947 + 102019746 AGCD01073646;GBDI01187808;XM_005412893;XM_005412894;XM_013509051;XM_013509052;XM_013509053 XP_005412950;XP_005412951;XP_013364505;XP_013364506;XP_013364507 MODEL 9038850 ncrna LOC102004359 uncharacterized LOC102004359 NW_004955409 13531193 13534835 + 102004359 AGCD01009612;GBDF01214064;XR_259783 MODEL 9060829 pseudo LOC102015227 60S ribosomal protein L9 pseudogene NW_004955429 10292015 10297453 + 102015227 AGCD01028669 MODEL 8908004 protein-coding Plxnc1 plexin C1 INVOLVED IN regulation of synapse pruning (ortholog); ASSOCIATED WITH endometriosis (ortholog); FOUND IN cerebellar climbing fiber to Purkinje cell synapse (ortholog) NW_004955405 30885277 31023947 + 102027377 AGCD01005280;GBDF01119435;XM_005374690;XM_013518393;XM_013518395;XM_013518396;XM_013518398 XP_005374747;XP_013373847;XP_013373849;XP_013373850;XP_013373852 MODEL 8907471 protein-coding LOC102003327 uncharacterized LOC102003327 NW_004955466 5485952 5548346 + 102003327 AGCD01050881;AGCD01050882;GBDF01043768;XM_005399132;XM_005399133;XM_005399134;XM_005399135;XM_013522017;XM_013522018 XP_005399189;XP_005399190;XP_005399191;XP_005399192;XP_013377471;XP_013377472 MODEL 8911930 pseudo LOC102008757 60S acidic ribosomal protein P0 pseudogene NW_004955429 2174980 2180342 + 102008757 AGCD01028416 MODEL 8969194 pseudo LOC102030659 DCN1-like protein 1 pseudogene NW_004955433 23341851 23344179 + 102030659 AGCD01031957 MODEL 10349623 ncrna LOC106146642 uncharacterized LOC106146642 NW_004955489 3714422 3727580 - 106146642 AGCD01059892;GBDK01330873;XR_001231178 MODEL 10151687 ncrna LOC106146926 uncharacterized LOC106146926 NW_004955505 7396179 7397795 - 106146926 AGCD01065204;XR_001231573 MODEL 8718196 protein-coding Nck2 NCK adaptor protein 2 ENCODES a protein that exhibits phosphotyrosine residue binding (ortholog); protein-containing complex binding (ortholog); scaffold protein binding (ortholog); INVOLVED IN actin filament organization (ortholog); cell migration (ortholog); dendritic spine development (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; insulin signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); Alzheimer's disease (ortholog); nephrotic syndrome (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); postsynaptic density (ortholog) NW_004955470 10487962 10593046 + 102030183 AGCD01052871;AGCD01052872;GBDF01223303;XM_005400789 XP_005400846 MODEL 8895308 protein-coding Bcs1l BCS1 ubiquinol-cytochrome c reductase complex chaperone ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); mitochondrial respiratory chain complex III assembly (ortholog); mitochondrial respiratory chain complex IV assembly (ortholog); ASSOCIATED WITH Bjornstad syndrome (ortholog); brain disease (ortholog); epilepsy (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955453 14762237 14766693 - 102007967 AGCD01044873;GBDK01357365;XM_005395637;XM_005395638;XM_005395639;XM_005395640;XM_013519927;XM_013519928;XM_013519929;XM_013519930 XP_005395694;XP_005395695;XP_005395696;XP_005395697;XP_013375381;XP_013375382;XP_013375383;XP_013375384 MODEL 8901600 ncrna LOC102026496 uncharacterized LOC102026496 NW_004955918 4267 5988 + 102026496 AGCD01078665;GBDJ01170860;XR_265197 MODEL 8707065 protein-coding LOC102029253 nuclear RNA export factor 2-like NW_004956896 2063 2522 - 102029253 AGCD01080291;GBDK01180905;GBDK01180907;XM_013510237 XP_013365691 MODEL 8918673 pseudo LOC102026846 60S ribosomal protein L7 pseudogene NW_004955467 7723643 7724437 - 102026846 AGCD01051438 MODEL 10145232 pseudo LOC106146506 transmembrane protein 132B pseudogene NW_004955482 3133859 3155753 + 106146506 AGCD01057259 MODEL 8961014 protein-coding LOC102002991 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955406 23014463 23015572 + 102002991 AGCD01006162;XM_005375051 XP_005375108 MODEL 8901067 pseudo LOC102023708 mortality factor 4-like protein 1 pseudogene NW_004955490 854719 868755 - 102023708 AGCD01060093;AGCD01060094;AGCD01060095 MODEL 8730380 protein-coding Spon1 spondin 1 ENCODES a protein that exhibits LBD domain binding (ortholog); INVOLVED IN negative regulation of amyloid-beta formation (ortholog); positive regulation of amyloid precursor protein catabolic process (ortholog); positive regulation of protein processing (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955414 29180246 29475547 + 102022490 AGCD01015700;AGCD01015701;AGCD01015702;AGCD01015703;AGCD01015704;AGCD01015705;GBCE01077278;XM_005380330 XP_005380387 MODEL 8834948 protein-coding LOC102021273 olfactory receptor 2J3-like NW_004955524 178638 179582 - 102021273 AGCD01068669;XM_005409656 XP_005409713 MODEL 8983925 protein-coding LOC102012257 lipopolysaccharide-binding protein NW_004955445 18358717 18389491 - 102012257 AGCD01039903;AGCD01039904;GBDJ01074877;XM_005392536;XR_001235614;XR_001235615;XR_001235616;XR_001235617;XR_262356 XP_005392593 MODEL 10285554 protein-coding LOC106148022 collagen alpha-2(I) chain-like NW_004955414 25214200 25214652 - 106148022 AGCD01015582;GBBH01193152;GBCQ01114307;XM_013511837 XP_013367291 MODEL 8819168 pseudo LOC102028172 40S ribosomal protein S29 pseudogene NW_004955464 7911148 7911340 - 102028172 AGCD01050072 MODEL 8799447 protein-coding LOC102025070 uncharacterized LOC102025070 NW_004955402 21982712 22029582 - 102025070 AGCD01000595;AGCD01000596;GBDI01122543;XM_013509229 XP_013364683 MODEL 9012651 protein-coding Klhl15 kelch like family member 15 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN negative regulation of double-strand break repair via homologous recombination (ortholog); nuclear protein quality control by the ubiquitin-proteasome system (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); non-syndromic X-linked intellectual disability 103 (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); nucleus (ortholog) NW_004955509 4377975 4439287 - 102016404 AGCD01066064;AGCD01066065;GBDF01177582;XM_005407838;XM_013506294 XP_005407895;XP_013361748 MODEL 8963725 protein-coding LOC102025431 lymphocyte antigen 6E NW_004955454 1824677 1828096 + 102025431 AGCD01044990;GBDI01289444;XM_005395753;XM_013520062 XP_005395810;XP_013375516 MODEL 8909645 protein-coding LOC102011869 butyrophilin subfamily 1 member A1-like NW_004955483 371694 378761 - 102011869 AGCD01057606;AGCD01057607;XM_013503804 XP_013359258 MODEL 8956968 protein-coding LOC102027537 uncharacterized LOC102027537 NW_004955491 4384685 4393990 - 102027537 AGCD01060431;GBCE01129898;XM_013504564 XP_013360018 MODEL 8850588 protein-coding LOC102005770 endothelin-converting enzyme-like 1 NW_004955453 3471402 3489839 + 102005770 AGCD01044659;AGCD01044660;AGCD01044661;GBBH01082477;GBDJ01085717;XM_013519999;XM_013520000 XP_013375453;XP_013375454 MODEL 8905934 protein-coding Pias4 protein inhibitor of activated STAT 4 ENCODES a protein that exhibits DNA binding (ortholog); SUMO ligase activity (ortholog); SUMO transferase activity (ortholog); INVOLVED IN central nervous system development (ortholog); hair follicle development (ortholog); limb epidermis development (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; Jak-Stat signaling pathway; type II interferon signaling pathway; FOUND IN cytoplasm (ortholog); nuclear matrix (ortholog); nucleoplasm (ortholog) NW_004955495 4760576 4791422 - 102015025 AGCD01061946;AGCD01061947;AGCD01061948;GBDI01227492;XM_005405818;XM_013505234 XP_005405875;XP_013360688 MODEL 8730608 protein-coding LOC102004360 RB-associated KRAB zinc finger protein NW_004955460 10721784 10738710 - 102004360 AGCD01048602;GBDF01153023;XM_005397845;XM_005397846;XM_013521129;XM_013521131;XM_013521132 XP_005397902;XP_005397903;XP_013376583;XP_013376585;XP_013376586 MODEL 8740216 protein-coding LOC102029959 olfactory receptor 13H1 NW_004955473 3409954 3410879 - 102029959 AGCD01053933;XM_013523051 XP_013378505 MODEL 8771879 protein-coding Epn1 epsin 1 ENCODES a protein that exhibits molecular sequestering activity (ortholog); transcription factor binding (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN clathrin coat assembly (ortholog); clathrin-dependent endocytosis (ortholog); embryonic organ development (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; ASSOCIATED WITH middle cerebral artery infarction (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog); postsynapse (ortholog) NW_004955567 669333 683283 - 102013769 AGCD01074423;AGCD01074424;GBCE01052885;GBCQ01011760;XM_005413292 XP_005413349 MODEL 8984866 pseudo LOC102018302 nucleolar GTP-binding protein 2-like NW_004955423 15646160 15649256 - 102018302 AGCD01023812;AGCD01023813 MODEL 8968083 protein-coding Sp100 SP100 nuclear body protein ENCODES a protein that exhibits chromo shadow domain binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN DNA damage response, signal transduction by p53 class mediator (ortholog); maintenance of protein location (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytoplasm (ortholog); Mre11 complex (ortholog); nuclear body (ortholog) NW_004955453 4774739 4856238 - 102008057 AGCD01044698;AGCD01044699;AGCD01044700;GBCE01115892;XM_013519802;XM_013519803;XM_013519804;XM_013519805;XM_013519806;XM_013519807;XM_013519808;XM_013519809 XP_013375256;XP_013375257;XP_013375258;XP_013375259;XP_013375260;XP_013375261;XP_013375262;XP_013375263 MODEL 8888104 protein-coding Plxnd1 plexin D1 ENCODES a protein that exhibits protein domain specific binding (ortholog); semaphorin receptor activity (ortholog); INVOLVED IN angiogenesis (ortholog); aorta development (ortholog); branching involved in blood vessel morphogenesis (ortholog); ASSOCIATED WITH Congenital Heart Defects, Multiple Types, 9 (ortholog); diastolic heart failure (ortholog); DiGeorge syndrome (ortholog); FOUND IN axon (ortholog); cell body (ortholog); glutamatergic synapse (ortholog) NW_004955429 17746814 17775072 + 102012112 AGCD01028866;GBBH01026681;GBDF01280799;XM_013515508 XP_013370962 MODEL 8832071 trna Trnar-ucg transfer RNA arginine (anticodon UCG) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955483;NW_004955483;NW_004955416;NW_004955553;NW_004955553 745122;769025;15772231;1885684;1885407 745194;769097;15772303;1885756;1885479 -;-;-;+;- 101978837 AGCD01017343;AGCD01057629;AGCD01057630;AGCD01072903 MODEL 8963481 protein-coding L3mbtl3 L3MBTL histone methyl-lysine binding protein 3 ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); methylation-dependent protein binding (ortholog); INVOLVED IN erythrocyte maturation (ortholog); granulocyte differentiation (ortholog); macrophage differentiation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); medulloblastoma (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955436 10900521 11014259 + 102016416 AGCD01033799;AGCD01033800;AGCD01033801;AGCD01033802;AGCD01033803;AGCD01033804;GBBH01036968;GBCB01076996;XM_013516682 XP_013372136 MODEL 9021627 protein-coding Icam5 intercellular adhesion molecule 5 ENCODES a protein that exhibits integrin binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN cell-cell adhesion mediated by integrin (ortholog); homophilic cell-cell adhesion (ortholog); neuron cell-cell adhesion (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); COVID-19 (ortholog); FOUND IN dendritic spine membrane (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955495 1575669 1583904 + 102027202 AGCD01061703;GBBH01154350;XM_013505160 XP_013360614 MODEL 8781205 ncrna LOC102006132 uncharacterized LOC102006132 NW_004955419 22988158 23031113 - 102006132 AGCD01020311;GBDF01280732;XR_260655 MODEL 10136515 ncrna LOC106146370 uncharacterized LOC106146370 NW_004955406 42711913 42731112 - 106146370 AGCD01006714;GBCE01009488;XR_001230783;XR_001230784;XR_001230785 MODEL 8836750 protein-coding Sh3bp1 SH3 domain binding protein 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); semaphorin receptor binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN actin filament organization (ortholog); cell junction assembly (ortholog); cell migration (ortholog); FOUND IN adherens junction (ortholog); bicellular tight junction (ortholog); cell leading edge (ortholog) NW_004955413 24042875 24054826 + 102007419 AGCD01014345;AGCD01014346;GBBH01092698;XM_005379214 XP_005379271 MODEL 8863161 protein-coding Otulinl OTU deubiquitinase with linear linkage specificity like ENCODES a protein that exhibits ubiquitin binding (ortholog); ubiquitin-like protein peptidase activity (ortholog); INVOLVED IN protein deubiquitination (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of endoplasmic reticulum membrane (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955426 3897327 3920631 + 102008963 AGCD01026085;GBCE01055395;XM_005386124 XP_005386181 MODEL 8991337 protein-coding Trdn triadin ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN cytoplasmic microtubule organization (ortholog); endoplasmic reticulum membrane organization (ortholog); heart contraction (ortholog); ASSOCIATED WITH catecholaminergic polymorphic ventricular tachycardia (ortholog); catecholaminergic polymorphic ventricular tachycardia 1 (ortholog); catecholaminergic polymorphic ventricular tachycardia 5 (ortholog); FOUND IN calcium channel complex (ortholog); junctional membrane complex (ortholog); junctional sarcoplasmic reticulum membrane (ortholog) NW_004955436 4963945 5266727 - 102027896 AGCD01033674;AGCD01033675;AGCD01033676;AGCD01033677;GBDI01303360;XM_005389153 XP_005389210 MODEL 39133338 snrna U4 U4 spliceosomal RNA 39132281 snorna SNORD105B small nucleolar RNA, C/D box 105B 10215119 ncrna LOC106146643 uncharacterized LOC106146643 NW_004955489 3439334 3451103 - 106146643 AGCD01059891;GBCE01138830;XR_001231179 MODEL 10185733 ncrna LOC106146928 uncharacterized LOC106146928 NW_004955505 4295110 4297169 - 106146928 AGCD01065096;GBDI01288795;XR_001231575 MODEL 8916418 ncrna LOC102023711 uncharacterized LOC102023711 NW_004955422 16259987 16263982 - 102023711 AGCD01022894;GBDF01114598;XR_260889 MODEL 9031261 protein-coding Wnt3a Wnt family member 3A ENCODES a protein that exhibits co-receptor binding (ortholog); frizzled binding (ortholog); identical protein binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); axis elongation involved in somitogenesis (ortholog); axon guidance (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Experimental Mammary Neoplasms (ortholog); hypothyroidism (ortholog); obesity (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog); glutamatergic synapse (ortholog) NW_004955581 351375 382541 - 102016538 AGCD01075667;AGCD01075668;AGCD01075669;GBDK01185286;XM_005414244 XP_005414301 MODEL 10386008 ncrna LOC106149220 uncharacterized LOC106149220 NW_004955440 11150592 11168661 + 106149220 AGCD01036403;XR_001235249 MODEL 9061988 ncrna LOC102002993 uncharacterized LOC102002993 NW_004955407 12761327 12805870 - 102002993 AGCD01007138;AGCD01007139;GBDF01086288;XR_001230993 MODEL 9032042 protein-coding LOC102026497 arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 NW_004955453 568681 925083 - 102026497 AGCD01044596;AGCD01044597;AGCD01044598;AGCD01044599;GBCE01174515;GBDF01195022;XM_005395316;XM_005395317;XM_005395318;XM_005395319;XM_005395320;XM_013519936;XM_013519937;XM_013519938 XP_005395373;XP_005395374;XP_005395375;XP_005395376;XP_005395377;XP_013375390;XP_013375391;XP_013375392 MODEL 8707172 pseudo LOC102007219 tRNA methyltransferase 10 homolog B pseudogene NW_004955472 2140534 2143118 - 102007219 AGCD01053437 MODEL 8741062 pseudo LOC102015228 polypyrimidine tract-binding protein 1-like NW_004955431 9288464 9290138 - 102015228 AGCD01030171 MODEL 8767165 protein-coding LOC102019480 myosin-7 NW_004955409 36905845 36928140 + 102019480 AGCD01010483;AGCD01010484;GBCB01040294;XM_005377179 XP_005377236 MODEL 8892553 ncrna LOC102024006 uncharacterized LOC102024006 NW_004955417 28844701 28851338 - 102024006 AGCD01018588;GBDK01125490;XR_260512 MODEL 8930079 protein-coding Spon2 spondin 2 ENCODES a protein that exhibits antigen binding (ortholog); lipopolysaccharide binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN cell adhesion (ortholog); cellular response to lipopolysaccharide (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Carotid Artery Injuries (ortholog); meningioma (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog) NW_004955514 598840 603390 - 102012117 AGCD01067016;GBCB01123188;XM_005408688 XP_005408745 MODEL 8807045 protein-coding Tead3 TEA domain transcription factor 3 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN asymmetric neuroblast division (ortholog); hippo signaling (ortholog); positive regulation of stem cell population maintenance (ortholog); FOUND IN transcription regulator complex (ortholog) NW_004955437 3387812 3405232 - 102027454 AGCD01034310;AGCD01034311;GBDK01091589;XM_005389558;XM_005389559;XM_013516911;XM_013516912;XM_013516913;XM_013516914;XM_013516915;XR_001235067 XP_005389615;XP_005389616;XP_013372365;XP_013372366;XP_013372367;XP_013372368;XP_013372369 MODEL 9018405 pseudo LOC102028174 hypoxanthine-guanine phosphoribosyltransferase-like NW_004955467 12786205 12788370 - 102028174 AGCD01051658 MODEL 8729956 ncrna LOC102025076 uncharacterized LOC102025076 NW_004955405 30094101 30106864 + 102025076 AGCD01005263;GBDF01286792;XR_259413 MODEL 8779079 ncrna LOC102005772 uncharacterized LOC102005772 NW_004955407 30090339 30104892 - 102005772 AGCD01007625;GBDF01113497;XR_259594 MODEL 9054694 protein-coding LOC102027539 chromosome unknown open reading frame, human C11orf86 NW_004955422 18407695 18415495 - 102027539 AGCD01022949;GBDI01348254;XM_013513822 XP_013369276 MODEL 8765584 protein-coding Klhl17 kelch like family member 17 ENCODES a protein that exhibits actin filament binding (ortholog); molecular adaptor activity (ortholog); POZ domain binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); regulation protein catabolic process at postsynapse (ortholog); ASSOCIATED WITH esophageal atresia/tracheoesophageal fistula (ortholog); FOUND IN actin cytoskeleton (ortholog); dendrite cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955486 9745162 9750874 - 102008950 AGCD01059198;GBDK01323002;XM_005404283;XM_013504206;XM_013504207;XM_013504208;XM_013504209;XM_013504210;XM_013504211 XP_005404340;XP_013359660;XP_013359661;XP_013359662;XP_013359663;XP_013359664;XP_013359665 MODEL 8793078 ncrna LOC102008759 uncharacterized LOC102008759 NW_004955432 20992358 20999001 - 102008759 AGCD01031212;AGCD01031213;GBDF01076071;XR_261539 MODEL 8923839 pseudo LOC102004361 rRNA-processing protein FCF1 homolog NW_004955409 37449725 37450930 + 102004361 AGCD01010519 MODEL 8838056 protein-coding Slc25a34 solute carrier family 25 member 34 INVOLVED IN blastocyst hatching (ortholog) NW_004955527 2433577 2437348 - 102009872 AGCD01069436;GBDI01262999;XM_005409861;XM_005409862 XP_005409918;XP_005409919 MODEL 9042418 protein-coding LOC102009114 olfactory receptor 1F1-like NW_004955442 14172448 14196764 - 102009114 AGCD01037803;AGCD01037804;AGCD01037805;AGCD01037806;GBDF01061825;XM_005391855 XP_005391912 MODEL 8938303 pseudo LOC102017941 L-lactate dehydrogenase A chain pseudogene NW_004955403 58774316 58775377 - 102017941 AGCD01003191;XR_259281 MODEL 8851127 protein-coding Pibf1 progesterone immunomodulatory binding factor 1 ENCODES a protein that exhibits identical protein binding (ortholog); interleukin-4 receptor binding (ortholog); INVOLVED IN activation of Janus kinase activity (ortholog); cilium assembly (ortholog); mitotic metaphase chromosome alignment (ortholog); ASSOCIATED WITH Dandy-Walker syndrome (ortholog); Encephalocele (ortholog); genetic disease (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955404 33713903 33897622 - 102026181 AGCD01004078;AGCD01004079;AGCD01004080;AGCD01004081;AGCD01004082;AGCD01004083;GBCQ01006314;XM_005374185;XM_005374186;XM_005374187;XM_013516628 XP_005374242;XP_005374243;XP_005374244;XP_013372082 MODEL 10390703 ncrna LOC106150036 uncharacterized LOC106150036 NW_004955406 20000843 20002443 - 106150036 AGCD01006095;GBDF01145012;XR_001236588 MODEL 8901654 protein-coding Nckap1 NCK associated protein 1 ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN apical protein localization (ortholog); basal protein localization (ortholog); cell migration involved in gastrulation (ortholog); PARTICIPATES IN E-cadherin signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); developmental and epileptic encephalopathy 11 (ortholog); FOUND IN filamentous actin (ortholog); glutamatergic synapse (ortholog); lamellipodium (ortholog) NW_004955403 14476689 14554380 + 102028709 AGCD01002021;AGCD01002022;AGCD01002023;AGCD01002024;AGCD01002025;GBCC01000299;XM_013514746 XP_013370200 MODEL 8971337 protein-coding LOC102026850 olfactory receptor 10R2-like NW_004955468 10371074 10376454 + 102026850 AGCD01052083;XM_005400314 XP_005400371 MODEL 9046826 protein-coding LOC102018303 zinc finger protein 69-like NW_004955495 7428743 7464274 - 102018303 AGCD01062137;AGCD01062138;AGCD01062139;AGCD01062140;AGCD01062141;GBDF01077565;GBDF01187778;XM_013505355 XP_013360809 MODEL 9052304 protein-coding Bdh1 3-hydroxybutyrate dehydrogenase 1 ENCODES a protein that exhibits 3-hydroxybutyrate dehydrogenase activity (ortholog); phospholipid binding (ortholog); INVOLVED IN adipose tissue development (ortholog); liver development (ortholog); response to cadmium ion (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ketone bodies metabolic pathway; succinyl-CoA:3-oxoacid transferase deficiency pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955420 13454379 13486700 - 102023364 AGCD01020922;AGCD01020923;GBCB01044106;XM_005383174;XM_005383176 XP_005383231;XP_005383233 MODEL 8876912 trna Trnar-ucu transfer RNA arginine (anticodon UCU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955423;NW_004955511;NW_004955465;NW_004955468;NW_004955467 841104;4044405;13275754;10939794;8841103 841188;4044489;13275843;10939867;8841189 -;+;+;-;- 101978839 AGCD01023421;AGCD01050596;AGCD01051475;AGCD01052109;AGCD01066488 MODEL 10267263 protein-coding LOC106146507 zinc finger protein 10 NW_004955482 53806 86613 - 106146507 AGCD01057160;GBCE01017570;XM_013503580 XP_013359034 MODEL 9039742 protein-coding Pm20d1 peptidase M20 domain containing 1 ENCODES a protein that exhibits hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); amino acid metabolic process (ortholog); energy homeostasis (ortholog); FOUND IN extracellular region (ortholog) NW_004955406 41522800 41544332 - 102014210 AGCD01006685;GBDI01244269;XM_005375377 XP_005375434 MODEL 8799324 pseudo LOC102020488 chromobox protein homolog 5 pseudogene NW_004955545 2014829 2017147 + 102020488 AGCD01071878;AGCD01071879;AGCD01071880 MODEL 8836528 pseudo LOC102025433 E3 ubiquitin-protein ligase RNF13-like NW_004955406 23609198 23639879 + 102025433 AGCD01006179;AGCD01006180 MODEL 8741987 pseudo LOC102003333 60S ribosomal protein L27 pseudogene NW_004955413 15155101 15155528 + 102003333 AGCD01014066 MODEL 8791802 ncrna LOC102009902 uncharacterized LOC102009902 NW_004956152 10489 11424 - 102009902 AGCD01079147;GBBH01228485;XR_265206 MODEL 8859897 ncrna LOC102030661 uncharacterized LOC102030661 NW_004955436 6854345 6864131 + 102030661 AGCD01033694;GBDF01192676;XR_001234927;XR_261767 MODEL 8810332 protein-coding LOC102029960 uncharacterized LOC102029960 NW_004955415 32153673 32159469 - 102029960 AGCD01016712;GBDJ01268706;XM_005381056;XR_001233204 XP_005381113 MODEL 8827225 pseudo LOC102011874 cytochrome c-type heme lyase pseudogene NW_004955489 679288 680097 - 102011874 AGCD01059812 MODEL 616940638 snorna SNORD11 small nucleolar RNA, C/D box 11 8951152 protein-coding Sap30l SAP30 like ENCODES a protein that exhibits DNA binding (ortholog); histone binding (ortholog); non-sequence-specific DNA binding, bending (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN fibrillar center (ortholog); histone deacetylase complex (ortholog); nucleolus (ortholog) NW_004955408 8827744 8832588 + 102030604 AGCD01008226;GBBH01004512;GBDI01012838;XM_005376194 XP_005376251 MODEL 8830948 protein-coding Pex39 peroxisomal biogenesis factor 39 ENCODES a protein that exhibits peroxisome matrix targeting signal-2 binding (ortholog); INVOLVED IN protein import into peroxisome matrix, docking (ortholog); FOUND IN cytosol (ortholog) NW_004955437 8912183 8912733 - 102025168 AGCD01034507;GBCE01024221;XM_005389727 XP_005389784 MODEL 8933403 protein-coding Sp110 SP110 nuclear body protein INVOLVED IN positive regulation of apoptotic process (ortholog); response to bacterium (ortholog); ASSOCIATED WITH genetic disease (ortholog); hepatic venoocclusive disease with immunodeficiency (ortholog); tuberculosis (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955453 4915541 4939438 + 102028713 AGCD01044701;GBCQ01123762;XM_005395419;XM_005395420;XM_013519981 XP_005395476;XP_005395477;XP_013375435 MODEL 8933620 protein-coding L3mbtl4 L3MBTL histone methyl-lysine binding protein 4 ASSOCIATED WITH megacolon (ortholog) NW_004955402 4927453 5168415 + 102013780 AGCD01000129;AGCD01000130;GBDF01179172;XM_013518523 XP_013373977 MODEL 10211031 protein-coding LOC106148023 uncharacterized LOC106148023 NW_004955403 872705 873482 - 106148023 AGCD01001709;GBDJ01153760;XM_013511882 XP_013367336 MODEL 8736958 protein-coding Ice1 interactor of little elongation complex ELL subunit 1 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN positive regulation of intracellular protein transport (ortholog); positive regulation of protein-containing complex assembly (ortholog); positive regulation of transcription by RNA polymerase III (ortholog); FOUND IN Cajal body (ortholog); euchromatin (ortholog); histone locus body (ortholog) NW_004955504 3409431 3465245 + 102023173 AGCD01064868;AGCD01064869;GBBH01050745;GBCE01064782;XM_013505895 XP_013361349 MODEL 8702571 protein-coding LOC102021276 disintegrin and metalloproteinase domain-containing protein 5-like NW_004955536 3528401 3648035 - 102021276 AGCD01070827;AGCD01070828;AGCD01070829;AGCD01070830;GBDF01008700;XM_005410548;XM_005410549;XM_013507719;XM_013507720 XP_005410605;XP_005410606;XP_013363173;XP_013363174 MODEL 8810723 protein-coding Slc25a35 solute carrier family 25 member 35 ASSOCIATED WITH Cardiac Arrhythmias (ortholog); FOUND IN mitochondrion (ortholog) NW_004955467 8618572 8628857 + 102019789 AGCD01051463;GBDK01357239;XM_013522178;XM_013522179;XM_013522180;XM_013522181;XM_013522182 XP_013377632;XP_013377633;XP_013377634;XP_013377635;XP_013377636 MODEL 10340597 protein-coding LOC106146371 uncharacterized LOC106146371 NW_004955476 11499202 11505864 + 106146371 AGCD01055460;GBDJ01164432;XM_013502924 XP_013358378 MODEL 8857374 protein-coding LOC102002994 keratin-associated protein 13-1-like NW_004955407 29780142 29780702 - 102002994 AGCD01007614;XM_005375629 XP_005375686 MODEL 8877016 protein-coding Wnt4 Wnt family member 4 ENCODES a protein that exhibits frizzled binding (ortholog); receptor ligand activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN adrenal gland development (ortholog); branching involved in ureteric bud morphogenesis (ortholog); branching morphogenesis of an epithelial tube (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH 46,XX Sex Reversal with Dysgenesis of Kidneys, Adrenals, and Lungs (ortholog); acute kidney failure (ortholog); Dwarfism (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular matrix (ortholog) NW_004955452 2319446 2344740 - 102006534 AGCD01043890;AGCD01043891;GBDF01041136;XM_005394734 XP_005394791 MODEL 8986517 ncrna LOC102019483 uncharacterized LOC102019483 NW_004955411 12939284 12945654 - 102019483 AGCD01011861;GBDF01122716;XR_259935 MODEL 8777274 protein-coding Sh3bp2 SH3 domain binding protein 2 ENCODES a protein that exhibits phosphotyrosine residue binding (ortholog); SH3 domain binding (ortholog); ASSOCIATED WITH cherubism (ortholog); cherubism 1 (ortholog); genetic disease (ortholog) NW_004955514 1700889 1730002 + 102026459 AGCD01067061;AGCD01067062;GBDF01124956;XM_005408740;XM_005408741;XM_013506799;XM_013506800;XM_013506801;XM_013506802 XP_005408797;XP_005408798;XP_013362253;XP_013362254;XP_013362255;XP_013362256 MODEL 9045296 protein-coding Otx1 orthodenticle homeobox 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); diencephalon morphogenesis (ortholog); forebrain development (ortholog) NW_004955424 21140038 21147268 - 102015125 AGCD01024895;GBDI01218798;XM_005385723;XM_013514745 XP_005385780;XP_013370199 MODEL 8905426 pseudo LOC102029255 retina-specific copper amine oxidase-like NW_004955451 16637939 16643095 + 102029255 AGCD01043697 MODEL 8957780 protein-coding Epn2 epsin 2 INVOLVED IN embryonic organ development (ortholog); in utero embryonic development (ortholog); negative regulation of sprouting angiogenesis (ortholog); FOUND IN clathrin coat of endocytic vesicle (ortholog); cytoplasm (ortholog); postsynaptic endocytic zone (ortholog) NW_004955467 419342 505909 - 102003745 AGCD01051219;AGCD01051220;AGCD01051221;AGCD01051222;AGCD01051223;GBCB01023639;XM_005399274;XM_005399276;XM_005399277 XP_005399331;XP_005399333;XP_005399334 MODEL 8886076 pseudo LOC102027542 transient receptor potential cation channel subfamily V member 5-like NW_004955494 853087 875142 - 102027542 AGCD01061386;AGCD01061387 MODEL 8743958 protein-coding LOC102003334 uncharacterized LOC102003334 NW_004955470 2780581 2789641 + 102003334 AGCD01052682;GBDF01222195;XM_005400615;XM_005400616;XM_005400617;XM_005400618 XP_005400672;XP_005400673;XP_005400674;XP_005400675 MODEL 8969040 pseudo LOC102025077 crooked neck-like protein 1 NW_004955405 23721294 23723863 - 102025077 AGCD01005135 MODEL 8793966 pseudo LOC102008760 ATP-dependent RNA helicase DDX50-like NW_004955519 1840874 1843190 - 102008760 AGCD01067909 MODEL 8967462 protein-coding LOC102011879 spermatogenesis-associated protein 31E1-like NW_004955422 23602412 23608132 + 102011879 AGCD01023197;GBDK01288025;XM_005384703 XP_005384760 MODEL 8979723 ncrna LOC102006138 uncharacterized LOC102006138 NW_004955420 26173887 26191360 - 102006138 AGCD01021392;GBDF01207381;XR_001233810;XR_260757 MODEL 9031435 protein-coding LOC102023713 beta-defensin 122-like NW_004955422 29503436 29506106 + 102023713 AGCD01023400;GBDF01043266;XM_005384920 XP_005384977 MODEL 9054203 ncrna LOC102008766 uncharacterized LOC102008766 NW_004955435 5849029 5853706 - 102008766 AGCD01032901;AGCD01032902;GBDF01188936;XR_261666 MODEL 8790591 protein-coding Bdh2 3-hydroxybutyrate dehydrogenase 2 ENCODES a protein that exhibits 3-hydroxybutyrate dehydrogenase activity (ortholog); 4-oxoproline reductase activity (ortholog); NAD binding (ortholog); INVOLVED IN epithelial cell differentiation (ortholog); fatty acid beta-oxidation (ortholog); siderophore biosynthetic process (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955496 5518403 5534325 + 102012338 AGCD01062355;XM_005406232 XP_005406289 MODEL 39133339 snrna U4 U4 spliceosomal RNA 8797187 pseudo LOC102024009 prefoldin subunit 1 pseudogene NW_004955484 7047221 7048723 - 102024009 AGCD01058306 MODEL 8933303 protein-coding Treh trehalase ENCODES a protein that exhibits alpha,alpha-trehalase activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); trehalose catabolic process (ortholog); PARTICIPATES IN trehalose degradation pathway; ASSOCIATED WITH Trehalase Deficiency (ortholog) NW_004955412 19801153 19815394 - 102016901 AGCD01012978;GBCE01024811;XM_005378269;XM_005378270;XM_005378271;XM_005378273 XP_005378326;XP_005378327;XP_005378328;XP_005378330 MODEL 8751995 pseudo LOC102025436 nicotinamide riboside kinase 1-like NW_004955407 15108686 15110922 - 102025436 AGCD01007182 MODEL 8725027 protein-coding Tead4 TEA domain transcription factor 4 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN blastocyst formation (ortholog); cell fate commitment (ortholog); cell fate specification (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955429 18497223 18552504 + 102025932 AGCD01028915;GBCB01007409;XM_005387130;XM_013515542;XM_013515543;XM_013515544;XM_013515545;XM_013515546;XM_013515547 XP_005387187;XP_013370996;XP_013370997;XP_013370998;XP_013370999;XP_013371000;XP_013371001 MODEL 8774805 protein-coding Spop speckle type BTB/POZ protein ENCODES a protein that exhibits identical protein binding (ortholog); molecular function inhibitor activity (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN glucose homeostasis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH colorectal cancer (ortholog); Ductal Carcinoma (ortholog); Endometrial Neoplasms (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); nuclear speck (ortholog) NW_004955451 11897642 11970269 + 102023968 AGCD01043369;AGCD01043370;GBDI01079176;XM_005394208 XP_005394265 MODEL 8948869 protein-coding Pm20d2 peptidase M20 domain containing 2 ENCODES a protein that exhibits dipeptidase activity (ortholog); identical protein binding (ortholog); INVOLVED IN proteolysis (ortholog); regulation of protein metabolic process (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955411 15932367 15943946 + 102017434 AGCD01011962;GBCQ01101234;GBDI01384473;XM_013510884 XP_013366338 MODEL 8716221 ncrna LOC102012259 uncharacterized LOC102012259 NW_004955402 6847522 6850356 - 102012259 AGCD01000162;GBDF01162294;XR_001235451 MODEL 10175391 ncrna LOC106146929 uncharacterized LOC106146929 NW_004955505 5954294 5966626 + 106146929 AGCD01065159;GBBH01153666;XR_001231576 MODEL 10321577 ncrna LOC106146644 uncharacterized LOC106146644 NW_004955489 3679233 3701201 - 106146644 AGCD01059892;GBDK01422130;XR_001231181 MODEL 8862526 pseudo LOC102019485 protein FAM136A pseudogene NW_004955411 22835359 22835809 - 102019485 AGCD01012098;XM_005377789 MODEL 8753411 ncrna LOC102009116 uncharacterized LOC102009116 NW_004955561 1295394 1311775 + 102009116 AGCD01073847;AGCD01073848;GBDF01260254;XR_001232356 MODEL 9066819 pseudo LOC102029257 coiled-coil domain-containing protein 152 pseudogene NW_004955404 41876057 41878022 + 102029257 AGCD01004338 MODEL 9058702 protein-coding Klhl18 kelch like family member 18 INVOLVED IN positive regulation of mitotic cell cycle phase transition (ortholog); protein ubiquitination (ortholog) NW_004955420 24917001 24968712 - 102016815 AGCD01021338;AGCD01021339;GBDF01126297;XM_005383411;XM_005383412;XM_005383414 XP_005383468;XP_005383469;XP_005383471 MODEL 10300371 protein-coding LOC106150037 translation initiation factor IF-2-like NW_004955462 390298 391074 + 106150037 AGCD01049077;GBBH01144866;XM_013521357 XP_013376811 MODEL 8972605 ncrna LOC102017945 uncharacterized LOC102017945 NW_004955405 7621676 7626930 + 102017945 AGCD01004721;GBDF01304497;XR_001236107;XR_259363 MODEL 9012536 protein-coding Picalm phosphatidylinositol binding clathrin assembly protein ENCODES a protein that exhibits 1-phosphatidylinositol binding (ortholog); clathrin binding (ortholog); clathrin heavy chain binding (ortholog); INVOLVED IN amyloid-beta clearance by transcytosis (ortholog); axonogenesis (ortholog); clathrin coat assembly (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); Cognitive Dysfunction (ortholog); FOUND IN cell surface (ortholog); clathrin coat of coated pit (ortholog); clathrin-coated pit (ortholog) NW_004955414 6871220 6970569 + 102013160 AGCD01014940;AGCD01014941;AGCD01014942;AGCD01014943;AGCD01014944;GBCE01054676;GBDF01008904;XM_005379748 XP_005379805 MODEL 8713235 protein-coding Nckap1l NCK associated protein 1 like ENCODES a protein that exhibits GTPase activator activity (ortholog); protein kinase activator activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN actin polymerization-dependent cell motility (ortholog); B cell homeostasis (ortholog); B cell receptor signaling pathway (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); immunodeficiency 72 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955458 1733799 1785591 + 102008293 AGCD01047202;AGCD01047203;AGCD01047204;GBDF01307320;XM_005397228 XP_005397285 MODEL 10309719 ncrna LOC106149221 uncharacterized LOC106149221 NW_004955440 12617681 12624364 - 106149221 AGCD01036432;AGCD01036433;GBDF01078250;XR_001235250 MODEL 15036853 trna Trnas-acu transfer RNA serine (anticodon ACU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978841 9007740 protein-coding Sp140 SP140 nuclear body protein ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN nucleus (ortholog) NW_004955453 4864812 4911699 - 102008376 AGCD01044700;AGCD01044701;GBDI01121434;XM_013519810;XM_013519811 XP_013375264;XP_013375265 MODEL 8982300 protein-coding LOC102007220 olfactory receptor 52H1-like NW_004955414 21459569 21460513 - 102007220 AGCD01015420;XM_005380497 XP_005380554 MODEL 10250036 ncrna LOC106148024 uncharacterized LOC106148024 NW_004955403 704061 710415 + 106148024 AGCD01001705;GBBH01210190;XR_001233131;XR_001233132 MODEL 8719190 protein-coding Lacc1 laccase domain containing 1 ENCODES a protein that exhibits adenosine deaminase activity (ortholog); guanosine phosphorylase activity (ortholog); oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (ortholog); INVOLVED IN nucleotide-binding oligomerization domain containing 2 signaling pathway (ortholog); pattern recognition receptor signaling pathway (ortholog); positive regulation of cytokine production involved in immune response (ortholog); ASSOCIATED WITH genetic disease (ortholog); leprosy (ortholog); systemic juvenile rheumatoid arthritis (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); nucleus (ortholog) NW_004955518 1794067 1809150 + 102009748 AGCD01067765;AGCD01067766;GBDF01277558;GBDF01277559;XM_005409073 XP_005409130 MODEL 8804734 protein-coding LOC102028175 olfactory receptor 6K3-like NW_004955468 10583760 10584704 - 102028175 AGCD01052090;XM_005400317 XP_005400374 MODEL 8856651 ncrna LOC102030662 uncharacterized LOC102030662 NW_004955530 73343 78146 - 102030662 AGCD01069830;GBDF01290784;XR_264701 MODEL 8995472 protein-coding Slc25a36 solute carrier family 25 member 36 ENCODES a protein that exhibits pyrimidine nucleotide transmembrane transporter activity (ortholog); INVOLVED IN pyrimidine nucleotide import into mitochondrion (ortholog); ASSOCIATED WITH familial hyperinsulinemic hypoglycemia 8 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955508 4699668 4721198 - 102030104 AGCD01065885;GBCQ01035640;GBDI01008293;XM_013506278 XP_013361732 MODEL 8944980 protein-coding LOC102029961 protocadherin gamma-B1 NW_004955415 12422017 12424502 - 102029961 AGCD01016195;AGCD01016196;GBDF01248206;XM_005381124 XP_005381181 MODEL 405822147 snorna SNORD110 small nucleolar RNA, C/D box 110 8879066 protein-coding Otx2 orthodenticle homeobox 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); axon guidance (ortholog); ASSOCIATED WITH Anophthalmia (ortholog); combined pituitary hormone deficiency (ortholog); combined pituitary hormone deficiency 6 (ortholog); FOUND IN cytoplasm (ortholog); growth cone (ortholog); nucleoplasm (ortholog) NW_004955466 10755143 10764957 - 102023791 AGCD01051074;GBDF01183552;XM_005399198;XM_013521875;XM_013521876 XP_005399255;XP_013377329;XP_013377330 MODEL 8899576 protein-coding LOC102026852 olfactory receptor 51V1-like NW_004955414 21040968 21041831 - 102026852 AGCD01015402;XM_013511773 XP_013367227 MODEL 8969128 protein-coding Sapcd1 suppressor APC domain containing 1 NW_004955437 297605 299242 + 102027898 AGCD01034117;GBDI01139374;XM_005389384;XM_013516811;XM_013516812 XP_005389441;XP_013372265;XP_013372266 MODEL 8838313 pseudo LOC102015231 epithelial membrane protein 1 pseudogene NW_004955433 22945510 22945958 - 102015231 AGCD01031949 MODEL 10103341 ncrna LOC106146508 uncharacterized LOC106146508 NW_004955482 205208 209283 + 106146508 AGCD01057167;GBBH01166395;XR_001230963 MODEL 8753664 protein-coding LOC102020489 beta-microseminoprotein-like NW_004955546 2799719 2807328 + 102020489 AGCD01072101;GBDI01016094;XM_005411810;XM_005411811 XP_005411867;XP_005411868 MODEL 8848941 protein-coding Ice2 interactor of little elongation complex ELL subunit 2 INVOLVED IN positive regulation of transcription by RNA polymerase III (ortholog); snRNA transcription by RNA polymerase II (ortholog); snRNA transcription by RNA polymerase III (ortholog); ASSOCIATED WITH Cocaine-Related Disorders (ortholog); Paranoid Disorders (ortholog); FOUND IN Cajal body (ortholog); euchromatin (ortholog); histone locus body (ortholog) NW_004955450 14462730 14512708 + 102008485 AGCD01042746;AGCD01042747;AGCD01042748;AGCD01042749;GBCQ01066936;GBDJ01274437;XM_013518923 XP_013374377 MODEL 8789422 pseudo LOC102017946 cytochrome c oxidase subunit 7B, mitochondrial pseudogene NW_004955452 16315978 16316312 + 102017946 AGCD01044505 MODEL 8774510 pseudo LOC102009903 probable U3 small nucleolar RNA-associated protein 11 pseudogene NW_004957626 626 1246 + 102009903 AGCD01081022 MODEL 8940011 pseudo LOC102002996 mitochondrial fission factor-like NW_004955455 354378 355152 + 102002996 AGCD01045556 MODEL 8802790 protein-coding LOC102005777 uncharacterized LOC102005777 NW_004955408 35127767 35155131 - 102005777 AGCD01008930;XM_013507575 XP_013363029 MODEL 8881569 ncrna LOC102023714 uncharacterized LOC102023714 NW_004955423 16979739 16983285 - 102023714 AGCD01023843;GBDF01020274;XR_260976 MODEL 8738857 protein-coding LOC102004372 intelectin-1a NW_004955468 12649293 12708557 - 102004372 AGCD01052172;AGCD01052173;AGCD01052174;AGCD01052175;AGCD01052176;AGCD01052177;AGCD01052178;AGCD01052179;AGCD01052180;AGCD01052181;GBBH01135202;GBDF01177021;XM_013522493 XP_013377947 MODEL 8823913 protein-coding Wnt5a Wnt family member 5A ENCODES a protein that exhibits chemoattractant activity involved in axon guidance (ortholog); cytokine activity (ortholog); frizzled binding (ortholog); INVOLVED IN ameboidal-type cell migration (ortholog); anterior/posterior axis specification, embryo (ortholog); anterior/posterior pattern specification (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH autosomal dominant Robinow syndrome 1 (ortholog); colon cancer (ortholog); Dwarfism (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955430 5304817 5325684 - 102006806 AGCD01029259;AY463493;GBCE01188526;GBDJ01145960;XM_005387380 XP_005387437 MODEL 8828839 protein-coding Bdkrb1 bradykinin receptor B1 ENCODES a protein that exhibits bradykinin receptor activity (ortholog); peptide binding (ortholog); INVOLVED IN cell migration (ortholog); cyclooxygenase pathway (ortholog); negative regulation of blood pressure (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphai family; G protein mediated signaling pathway via Galphaq family; kallikrein-kinin cascade pathway; ASSOCIATED WITH Diabetes Complications (ortholog); diabetic angiopathy (ortholog); diabetic neuropathy (ortholog) NW_004955438 16500219 16505394 - 102014289 AGCD01035420;GBDJ01390087;XM_005390373 XP_005390430 MODEL 8733305 protein-coding Sh3bp4 SH3 domain binding protein 4 ENCODES a protein that exhibits GDP-dissociation inhibitor activity (ortholog); identical protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN amino acid import (ortholog); cellular response to amino acid stimulus (ortholog); negative regulation of cell growth (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog) NW_004955453 1387954 1425268 - 102028930 AGCD01044612;GBDK01141681;XM_005395325;XM_005395328;XM_005395329 XP_005395382;XP_005395385;XP_005395386 MODEL 8772698 ncrna LOC102018304 uncharacterized LOC102018304 NW_004955424 21693778 21701536 - 102018304 AGCD01024903;GBBH01046018;XR_261096 MODEL 8815742 protein-coding Pex5 peroxisomal biogenesis factor 5 ENCODES a protein that exhibits enzyme binding (ortholog); peroxisome matrix targeting signal-1 binding (ortholog); peroxisome membrane targeting sequence binding (ortholog); INVOLVED IN cell development (ortholog); cellular response to reactive oxygen species (ortholog); cerebral cortex cell migration (ortholog); ASSOCIATED WITH Cerebrohepatorenal Syndrome, Variant Types (ortholog); Fanconi anemia complementation group D2 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955413 4736189 4755559 + 102013273 AGCD01013625;AGCD01013626;GBDF01262971;XM_013511628;XM_013511629;XM_013511630;XM_013511631;XM_013511632;XM_013511633;XM_013511634 XP_013367082;XP_013367083;XP_013367084;XP_013367085;XP_013367086;XP_013367087;XP_013367088 MODEL 8794520 protein-coding LOC102003335 olfactory receptor 2S2-like NW_004955472 333588 338863 + 102003335 AGCD01053329;GBDK01098752;XM_005400985;XM_013522931 XP_005401042;XP_013378385 MODEL 9034611 protein-coding Epn3 epsin 3 ENCODES a protein that exhibits EH domain binding (ortholog); ASSOCIATED WITH diastolic heart failure (ortholog); recessive dystrophic epidermolysis bullosa (ortholog); FOUND IN clathrin-coated pit (ortholog); clathrin-coated vesicle (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955451 11209454 11218427 - 102011935 AGCD01043342;GBBH01089702;XM_013519085;XM_013519086;XM_013519088;XM_013519089;XM_013519090 XP_013374539;XP_013374540;XP_013374542;XP_013374543;XP_013374544 MODEL 8802107 pseudo LOC102011882 thioredoxin pseudogene NW_004955494 7209430 7210242 - 102011882 AGCD01061546 MODEL 8758771 ncrna LOC102006139 uncharacterized LOC102006139 NW_004955487 380275 384952 - 102006139 AGCD01059217;AGCD01059218;GBDF01221413;XR_263979 MODEL 9018250 protein-coding LOC102021279 AFG3-like protein 1 NW_004955541 3433520 3460695 + 102021279 AGCD01071448;AGCD01071449;GBDF01049325;XM_013507965 XP_013363419 MODEL 9001641 protein-coding Pick1 protein interacting with PRKCA 1 ENCODES a protein that exhibits actin filament binding (ortholog); Arp2/3 complex binding (ortholog); cytoskeletal protein binding (ortholog); INVOLVED IN AMPA glutamate receptor clustering (ortholog); cellular response to decreased oxygen levels (ortholog); cellular response to glucose starvation (ortholog); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH amphetamine abuse (ortholog); substance-induced psychosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955413 24383130 24399092 + 102014342 AGCD01014363;AGCD01014364;GBDI01135012;XM_005379238;XM_005379240 XP_005379295;XP_005379297 MODEL 8940113 pseudo LOC102008769 E3 ubiquitin-protein ligase XIAP pseudogene NW_004955536 609566 611847 + 102008769 AGCD01070732 MODEL 8871000 protein-coding Nckap5 NCK associated protein 5 ASSOCIATED WITH amenorrhea (ortholog); proteinuria (ortholog) NW_004955440 266389 1159224 - 102029122 AGCD01036160;AGCD01036161;AGCD01036162;AGCD01036163;AGCD01036164;AGCD01036165;AGCD01036166;AGCD01036167;AGCD01036168;AGCD01036169;AGCD01036170;AGCD01036171;AGCD01036172;AGCD01036173;AGCD01036174;AGCD01036175;AGCD01036176;GBDK01133273;XM_005390736;XM_013517461;XM_013517462;XM_013517463 XP_005390793;XP_013372915;XP_013372916;XP_013372917 MODEL 8827192 protein-coding Trem2 triggering receptor expressed on myeloid cells 2 ENCODES a protein that exhibits amyloid-beta binding (ortholog); apolipoprotein A-I binding (ortholog); apolipoprotein binding (ortholog); INVOLVED IN amyloid-beta clearance (ortholog); amyloid-beta clearance by cellular catabolic process (ortholog); apoptotic cell clearance (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Alzheimer's disease 17 (ortholog); dementia (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog); plasma membrane raft (ortholog) NW_004955437 7780886 7785597 - 102009649 AGCD01034467;GBCE01052348;XM_005389679 XP_005389736 MODEL 8769388 pseudo LOC102024011 ubiquitin-conjugating enzyme E2 D3 pseudogene NW_004955484 2154271 2155118 - 102024011 AGCD01058092 MODEL 8792182 ncrna LOC102025437 uncharacterized LOC102025437 NW_004955409 3239990 3248953 + 102025437 AGCD01009237;GBDF01223965;XR_259748 MODEL 8945747 protein-coding LOC102012260 eukaryotic translation elongation factor 1 epsilon-1 NW_004955583 253526 254563 - 102012260 AGCD01075808;GBCC01054013;XM_005414299 XP_005414356 MODEL 626189139 snorna SNORD111 small nucleolar RNA, C/D box 111 8785792 protein-coding Pmaip1 phorbol-12-myristate-13-acetate-induced protein 1 INVOLVED IN apoptotic process (ortholog); cellular response to glucose starvation (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); COVID-19 (ortholog); substance-related disorder (ortholog); FOUND IN Bcl-2 family protein complex (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955402 44005517 44010722 + 102015363 AGCD01001085;GBDJ01234034;XM_005373005;XM_005373006 XP_005373062;XP_005373063 MODEL 10353889 pseudo LOC106146930 zinc finger protein 606-like NW_004955407 24233264 24235066 + 106146930 AGCD01007459 MODEL 8988877 protein-coding LOC102029964 olfactory receptor 4F15-like NW_004955416 45218 50502 + 102029964 AGCD01016765;XM_005381683 XP_005381740 MODEL 10244346 ncrna LOC106146646 uncharacterized LOC106146646 NW_004955489 1885073 1886559 - 106146646 AGCD01059854;GBBH01109547;XR_001231183 MODEL 8902037 pseudo LOC102025081 60S ribosomal protein L35a pseudogene NW_004955406 33816177 33816497 + 102025081 AGCD01006488 MODEL 8842746 protein-coding Tec tec protein tyrosine kinase ENCODES a protein that exhibits non-membrane spanning protein tyrosine kinase activity (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); integrin-mediated signaling pathway (ortholog); regulation of platelet activation (ortholog); PARTICIPATES IN erythropoietin signaling pathway; FOUND IN cell-cell junction (ortholog); cytoskeleton (ortholog); plasma membrane (ortholog) NW_004955443 339678 474029 + 102025850 AGCD01038099;AGCD01038100;AGCD01038101;AGCD01038102;AGCD01038103;AGCD01038104;AGCD01038105;AGCD01038106;AGCD01038107;AGCD01038108;AGCD01038109;AGCD01038110;AGCD01038111;GBDF01113226;XM_005391885 XP_005391942 MODEL 8861735 pseudo LOC102019486 glycolipid transfer protein-like NW_004955464 11913275 11914481 - 102019486 AGCD01050168 MODEL 8846870 ncrna LOC102029258 uncharacterized LOC102029258 NW_004955452 8696437 8707257 - 102029258 AGCD01044223;GBCQ01013631;XR_001236019;XR_001236020;XR_262666 MODEL 8759121 protein-coding Sh3bp5 SH3 domain binding protein 5 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); protein kinase inhibitor activity (ortholog); INVOLVED IN intracellular signal transduction (ortholog); negative regulation of protein kinase activity (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); mitochondrion (ortholog); nuclear body (ortholog) NW_004955430 2251544 2266166 + 102014074 AGCD01029161;AGCD01029162;GBCB01005483;XM_005387310 XP_005387367 MODEL 10108204 protein-coding LOC106150038 uncharacterized protein C10orf68-like NW_004955462 4646881 4690098 - 106150038 AGCD01049237;AGCD01049238;AGCD01049239;GBDF01049445;XM_013521359 XP_013376813 MODEL 8860192 protein-coding Ovca2 OVCA2 serine hydrolase domain containing ENCODES a protein that exhibits carboxylesterase activity (ortholog); INVOLVED IN response to retinoic acid (ortholog); ASSOCIATED WITH ovarian cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955481 1192930 1195142 - 102012759 AGCD01056828;XM_005402599 XP_005402656 MODEL 10356901 ncrna LOC106146372 uncharacterized LOC106146372 NW_004955476 11635682 11640746 - 106146372 AGCD01055468;GBCE01097418;XR_001230786;XR_001230787;XR_001230788 MODEL 8931798 trna Trnas-aga transfer RNA serine (anticodon AGA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978802 AGCD01018131;AGCD01050593;AGCD01050595;AGCD01050596;AGCD01051466;AGCD01057629 MODEL 8768951 protein-coding Klhl2 kelch like family member 2 ENCODES a protein that exhibits actin binding (ortholog); identical protein binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN protein catabolic process (ortholog); protein ubiquitination (ortholog); FOUND IN actin cytoskeleton (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955403 40013840 40094853 - 102012390 AGCD01002656;AGCD01002657;AGCD01002658;AGCD01002659;GBCB01060956;XM_013513491 XP_013368945 MODEL 9045862 pseudo LOC102007222 protein SPT2 homolog pseudogene NW_004955474 802672 804690 - 102007222 AGCD01054229 MODEL 8979720 protein-coding LOC102003337 olfactory receptor 51G2-like NW_004955414 20918933 20919880 - 102003337 AGCD01015395;XM_005380486 XP_005380543 MODEL 8976061 protein-coding Lactb lactamase beta ENCODES a protein that exhibits identical protein binding (ortholog); peptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); regulation of lipid metabolic process (ortholog); ASSOCIATED WITH obesity (ortholog); FOUND IN mitochondrion (ortholog) NW_004955450 12140049 12155600 - 102010652 AGCD01042692;GBBH01149956;GBDF01125044;XM_013519043;XM_013519044 XP_013374497;XP_013374498 MODEL 8849561 pseudo LOC102028177 uncharacterized protein C3orf17-like NW_004955469 3312011 3327829 - 102028177 AGCD01052297 MODEL 8907676 protein-coding Spopl speckle type BTB/POZ protein like ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of protein ubiquitination (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog) NW_004955440 5594970 5612677 + 102013549 AGCD01036277;GBCB01004850;XM_005390773;XM_005390774;XM_013517500;XM_013517501 XP_005390830;XP_005390831;XP_013372954;XP_013372955 MODEL 8931718 ncrna LOC102023716 uncharacterized LOC102023716 NW_004955497 4852494 4864900 - 102023716 AGCD01062586;GBDF01089499;XR_001231424 MODEL 8993937 pseudo LOC102005778 small nuclear ribonucleoprotein Sm D1 pseudogene NW_004955458 15135529 15136459 - 102005778 AGCD01047865 MODEL 8734439 protein-coding Slc25a37 solute carrier family 25 member 37 ENCODES a protein that exhibits ferrous iron transmembrane transporter activity (ortholog); iron ion transmembrane transporter activity (ortholog); INVOLVED IN iron import into the mitochondrion (ortholog); positive regulation of hemoglobin biosynthetic process (ortholog); PARTICIPATES IN iron uptake pathway; ASSOCIATED WITH anemia (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955403 46697560 46739082 + 102019559 AGCD01002866;AGCD01002867;GBDF01004000;XM_005373702;XM_013514004;XM_013514005 XP_005373759;XP_013369458;XP_013369459 MODEL 8935277 ncrna LOC102009117 uncharacterized LOC102009117 NW_004955563 897520 906409 - 102009117 AGCD01074095;GBDF01019723;XR_001232368;XR_265015 MODEL 8726017 protein-coding Nckap5l NCK associated protein 5 like INVOLVED IN microtubule bundle formation (ortholog); microtubule depolymerization (ortholog); FOUND IN centrosome (ortholog); microtubule plus-end (ortholog) NW_004955547 381338 416658 - 102007942 AGCD01072153;AGCD01072154;GBDJ01280139;XM_005411849;XM_005411850;XM_013508476;XM_013508477;XM_013508478 XP_005411906;XP_005411907;XP_013363930;XP_013363931;XP_013363932 MODEL 8929077 protein-coding Sapcd2 suppressor APC domain containing 2 INVOLVED IN establishment of mitotic spindle orientation (ortholog); negative regulation of protein localization to cell cortex (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); developmental and epileptic encephalopathy 14 (ortholog); FOUND IN apical cortex (ortholog); apical junction complex (ortholog); cytoplasm (ortholog) NW_004955513 5086379 5090876 - 102030109 AGCD01066954;GBDF01156921;XM_013506719 XP_013362173 MODEL 8998375 pseudo LOC102026854 zona pellucida sperm-binding protein 2 pseudogene NW_004955473 7243103 7274080 - 102026854 AGCD01054018 MODEL 9037051 pseudo LOC102015234 myosin light chain 6B pseudogene NW_004955434 16032905 16034308 - 102015234 AGCD01032509 MODEL 39133340 snrna U4 U4 spliceosomal RNA 10347529 ncrna LOC106148025 uncharacterized LOC106148025 NW_004955403 817935 827446 + 106148025 AGCD01001708;GBDF01188794;XR_001233133 MODEL 8913397 protein-coding Sp2 Sp2 transcription factor ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); histone deacetylase binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN circulatory system development (ortholog); embryonic organ development (ortholog); fibroblast proliferation (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955451 13205463 13231181 - 102012492 AGCD01043460;AGCD01043461;AGCD01043462;GBDI01263587;XM_005394259;XM_005394260;XM_005394261 XP_005394316;XP_005394317;XP_005394318 MODEL 8857148 ncrna LOC102020490 uncharacterized LOC102020490 NW_004955441 9358282 9362331 - 102020490 AGCD01037019;GBDF01209913;XR_262063 MODEL 9065403 ncrna LOC102026499 uncharacterized LOC102026499 NW_004955453 12138347 12143736 - 102026499 AGCD01044828;GBDF01052048;XR_262729;XR_262730 MODEL 8861262 pseudo LOC102003001 E3 SUMO-protein ligase PIAS2 pseudogene NW_004955409 16215943 16246882 + 102003001 AGCD01009715;AGCD01009716;AGCD01009717 MODEL 9003542 protein-coding LOC102027543 spermatogenesis-associated protein 31-like NW_004955422 24243696 24246738 - 102027543 AGCD01023217;AGCD01023218;XM_013513838 XP_013369292 MODEL 8976729 protein-coding Pid1 phosphotyrosine interaction domain containing 1 INVOLVED IN cellular response to cytokine stimulus (ortholog); cellular response to fatty acid (ortholog); cellular response to interleukin-6 (ortholog); ASSOCIATED WITH asthma (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN cytoplasm (ortholog) NW_004955453 5680418 5913236 + 102005004 AGCD01044712;AGCD01044713;AGCD01044714;GBDJ01190629;XM_013519988 XP_013375442 MODEL 9031305 protein-coding LOC102018305 melanoma-associated antigen 8-like NW_004955498 2272824 2273840 + 102018305 AGCD01062779;XM_005406469 XP_005406526 MODEL 8830199 pseudo LOC102024014 arginine--tRNA ligase, cytoplasmic pseudogene NW_004955421 2200401 2202377 - 102024014 AGCD01021620 MODEL 8818045 protein-coding Bdkrb2 bradykinin receptor B2 ENCODES a protein that exhibits beta-2 adrenergic receptor binding (ortholog); bradykinin receptor activity (ortholog); protease binding (ortholog); INVOLVED IN acute inflammatory response to antigenic stimulus (ortholog); arachidonate secretion (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphai family; G protein mediated signaling pathway via Galphaq family; kallikrein-kinin cascade pathway; ASSOCIATED WITH acute kidney failure (ortholog); Animal Disease Models (ortholog); asthma (ortholog); FOUND IN endosome (ortholog); plasma membrane (ortholog) NW_004955438 16514300 16537160 - 102014608 AGCD01035420;AGCD01035421;GBDJ01225170;XM_005390374;XM_005390375 XP_005390431;XP_005390432 MODEL 626189159 snorna SNORD111B small nucleolar RNA, C/D box 111B 9049552 pseudo LOC102005779 unconventional myosin-Va pseudogene NW_004955459 2117974 2121858 - 102005779 AGCD01047982 MODEL 8993017 protein-coding Pmch pro-melanin concentrating hormone ENCODES a protein that exhibits melanin-concentrating hormone activity (ortholog); type 1 melanin-concentrating hormone receptor binding (ortholog); INVOLVED IN drinking behavior (ortholog); feeding behavior (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH Insulin Resistance (ortholog); obesity (ortholog); sleeping sickness (ortholog); FOUND IN extracellular region (ortholog); nucleus (ortholog) NW_004955405 37357468 37360695 - 102029697 AGCD01005452;GBBH01147925;XM_005374562 XP_005374619 MODEL 10242405 ncrna LOC106146509 uncharacterized LOC106146509 NW_004955482 6500657 6502112 + 106146509 AGCD01057399;GBCQ01186745;XR_001230964 MODEL 9067501 protein-coding Epo erythropoietin ENCODES a protein that exhibits cytokine activity (ortholog); erythropoietin receptor binding (ortholog); hormone activity (ortholog); INVOLVED IN acute-phase response (ortholog); apoptotic process (ortholog); cell surface receptor signaling pathway via STAT (ortholog); PARTICIPATES IN erythropoietin signaling pathway; hypoxia inducible factor pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Subdural Hematoma (ortholog); Acute-Phase Reaction (ortholog); FOUND IN cell body (ortholog); cell surface (ortholog); extracellular region (ortholog) NW_004955573 203875 206078 - 102013562 AGCD01074966;GBDF01164330;XM_005413690 XP_005413747 MODEL 8767205 ncrna LOC102019487 uncharacterized LOC102019487 NW_004955412 6217988 6251126 + 102019487 AGCD01012668;AGCD01012669;GBDF01075391;XR_001232893;XR_001232894;XR_259979 MODEL 8849684 pseudo LOC102006140 C-Myc-binding protein pseudogene NW_004955488 2573938 2602551 + 102006140 AGCD01059547 MODEL 8741348 ncrna LOC102030668 uncharacterized LOC102030668 NW_004955438 15258194 15259275 + 102030668 AGCD01035360;GBBH01113430;XR_261937 MODEL 8765696 pseudo LOC102009912 KATNB1-like protein 1 pseudogene NW_004955406 13799840 13800569 + 102009912 AGCD01005954 MODEL 10341814 ncrna LOC106146373 uncharacterized LOC106146373 NW_004955476 10117709 10118769 - 106146373 AGCD01055413;GBBH01023422;XR_001230789 MODEL 8796085 ncrna LOC102008772 uncharacterized LOC102008772 NW_004955442 14332729 14334118 - 102008772 AGCD01037810;GBBH01025947;XR_001235407 MODEL 8900255 pseudo LOC102017947 sorting nexin-6 pseudogene NW_004955405 9414066 9415333 + 102017947 AGCD01004772 MODEL 8700080 pseudo LOC102026855 heterogeneous nuclear ribonucleoprotein C-like NW_004955415 14284575 14285556 - 102026855 AGCD01016295 MODEL 8820435 protein-coding Icmt isoprenylcysteine carboxyl methyltransferase ENCODES a protein that exhibits cAMP response element binding protein binding (ortholog); protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity (ortholog); INVOLVED IN bone mineralization (ortholog); C-terminal protein methylation (ortholog); CAAX-box protein maturation (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955486 6280838 6289584 + 102013419 AGCD01059117;GBDF01088371;XM_005404099 XP_005404156 MODEL 8765453 pseudo LOC102003338 zinc finger protein 3-like NW_004955415 14712827 14722881 - 102003338 AGCD01016308 MODEL 8838886 protein-coding LOC102007223 cystatin-C-like NW_004955415 30634590 30646109 + 102007223 AGCD01016666;GBDI01294913;XM_005380976;XM_013512135 XP_005381033;XP_013367589 MODEL 10241858 ncrna LOC106149222 uncharacterized LOC106149222 NW_004955440 16710879 16729299 - 106149222 AGCD01036527;XR_001235251 MODEL 39131417 protein-coding SP3 Sp3 transcription factor 8926502 pseudo LOC102025439 sodium/potassium-transporting ATPase subunit beta-3 pseudogene NW_004955409 12552945 12555503 - 102025439 AGCD01009552 MODEL 8848705 protein-coding Lactb2 lactamase beta 2 ENCODES a protein that exhibits RNA endonuclease activity (ortholog); single-stranded RNA binding (ortholog); zinc ion binding (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); mitochondrial matrix (ortholog) NW_004955444 9059999 9088705 + 102029910 AGCD01038956;AGCD01038957;AGCD01038958;GBDK01276467;XM_005392104 XP_005392161 MODEL 8704874 protein-coding LOC102028179 olfactory receptor 52A1 NW_004955414 21134193 21135131 - 102028179 AGCD01015407;XM_005380075 XP_005380132 MODEL 8856477 protein-coding LOC102023724 zinc finger protein 62-like NW_004955507 6177248 6179270 - 102023724 AGCD01065697;XM_013506147 XP_013361601 MODEL 8886057 ncrna LOC102025086 uncharacterized LOC102025086 NW_004955455 14383123 14393046 - 102025086 AGCD01046089;AGCD01046090;GBBH01162429;XR_262859 MODEL 8760976 protein-coding Tecpr1 tectonin beta-propeller repeat containing 1 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagy (ortholog); macroautophagy (ortholog); ASSOCIATED WITH esophageal atresia/tracheoesophageal fistula (ortholog); FOUND IN autophagosome membrane (ortholog); early endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955460 14106711 14137983 - 102027725 AGCD01048738;AGCD01048739;AGCD01048740;GBDI01139627;XM_005397911;XM_013521165;XM_013521166 XP_005397968;XP_013376619;XP_013376620 MODEL 10264758 ncrna LOC106150039 uncharacterized LOC106150039 NW_004955462 9394271 9394930 + 106150039 AGCD01049338;XR_001236592 MODEL 8931274 protein-coding LOC102021280 serpin A11 NW_004955438 17885184 17897498 + 102021280 AGCD01035456;GBDJ01284370;XM_005390392 XP_005390449 MODEL 9032840 protein-coding LOC102004375 olfactory receptor 51Q1-like NW_004955414 21317366 21326113 + 102004375 AGCD01015412;AGCD01015413;AGCD01015414;XM_005380083 XP_005380140 MODEL 8976032 pseudo LOC102006141 BAG family molecular chaperone regulator 5-like NW_004955492 7211744 7213061 + 102006141 AGCD01060779 MODEL 8899639 protein-coding Wnt5b Wnt family member 5B ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN chondrocyte differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); positive regulation of cell migration (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); leiomyoma (ortholog); Salivary Gland Neoplasms (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog) NW_004955454 4158648 4192709 + 102025082 AGCD01045118;AGCD01045119;GBDK01139056;XM_005395951;XM_005395953;XM_013520275;XM_013520276;XM_013520277 XP_005396008;XP_005396010;XP_013375729;XP_013375730;XP_013375731 MODEL 8880759 ncrna LOC102020492 uncharacterized LOC102020492 NW_004955555 478674 504042 - 102020492 AGCD01073033;AGCD01073034;AGCD01073035;GBDF01009942;XR_001232300 MODEL 8840453 ncrna LOC102026501 uncharacterized LOC102026501 NW_004955407 6142938 6170753 + 102026501 AGCD01006942;AGCD01006943;AGCD01006944;GBCQ01127273;XR_259554;XR_259555 MODEL 8940114 protein-coding LOC102008777 atherin-like NW_004955558 851314 852320 + 102008777 AGCD01073394;GBCE01172818;GBDF01225096;XM_013508881 XP_013364335 MODEL 8723360 ncrna LOC102011884 uncharacterized LOC102011884 NW_004955424 343712 352617 - 102011884 AGCD01024172;AGCD01024173;GBDF01052736;XR_261019 MODEL 8817279 protein-coding Spout1 SPOUT domain containing methyltransferase 1 ENCODES a protein that exhibits methyltransferase activity (ortholog); miRNA binding (ortholog); RNA methyltransferase activity (ortholog); INVOLVED IN maintenance of centrosome location (ortholog); miRNA processing (ortholog); post-transcriptional regulation of gene expression (ortholog); ASSOCIATED WITH NEURODEVELOPMENTAL DISORDER WITH POOR GROWTH, SEIZURES, AND BRAIN ABNORMALITIES (ortholog); FOUND IN kinetochore (ortholog); mitotic spindle (ortholog); spindle pole centrosome (ortholog) NW_004955570 1202987 1211052 - 102009666 AGCD01074799;GBCB01075115;XM_005413588 XP_005413645 MODEL 8754650 ncrna LOC102029259 uncharacterized LOC102029259 NW_004955405 31125312 31126419 + 102029259 AGCD01005280;GBDF01306147;XR_259417 MODEL 10383182 protein-coding LOC106146648 cancer/testis antigen family 45 member A10-like NW_004955489 9156740 9168874 - 106146648 AGCD01060028;AGCD01060029;GBDF01161772;XM_013504470;XM_013504471 XP_013359924;XP_013359925 MODEL 8919759 protein-coding Pex5l peroxisomal biogenesis factor 5 like ENCODES a protein that exhibits intracellularly cyclic nucleotide-activated monoatomic cation channel activity (ortholog); peroxisome matrix targeting signal-1 binding (ortholog); peroxisome targeting sequence binding (ortholog); INVOLVED IN maintenance of protein location (ortholog); positive regulation of corticotropin secretion (ortholog); regulated exocytosis (ortholog); FOUND IN cell tip (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955420 8924399 9146309 - 102015016 AGCD01020737;AGCD01020738;AGCD01020739;AGCD01020740;GBDK01112864;XM_005383051;XM_005383053;XM_005383054;XM_005383055;XM_005383056;XM_005383058;XM_013513606;XM_013513607;XM_013513608;XM_013513609 XP_005383108;XP_005383110;XP_005383111;XP_005383112;XP_005383113;XP_005383115;XP_013369060;XP_013369061;XP_013369062;XP_013369063 MODEL 8739986 protein-coding Sp3 Sp3 transcription factor ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN B cell differentiation (ortholog); definitive hemopoiesis (ortholog); embryonic camera-type eye morphogenesis (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); protein-DNA complex (ortholog) NW_004955449 1347781 1404368 + 102008905 AGCD01041796;AGCD01041797;AGCD01041798;AGCD01041799;AGCD01041800;GBBH01098526;XM_005393193 XP_005393250 MODEL 8951104 ncrna LOC102024026 uncharacterized LOC102024026 NW_004955498 3548837 3565146 - 102024026 AGCD01062905;AGCD01062906;GBDF01286420;XR_264214 MODEL 8747775 protein-coding Sh3bp5l SH3 binding domain protein 5 like ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog) NW_004955418 29884660 29893611 - 102019063 AGCD01019488;GBDF01276737;XM_005382328;XM_013513008 XP_005382385;XP_013368462 MODEL 8720790 protein-coding Nckipsd NCK interacting protein with SH3 domain INVOLVED IN positive regulation of neuron projection development (ortholog); regulation of postsynapse assembly (ortholog); FOUND IN COP9 signalosome (ortholog); glutamatergic synapse (ortholog); nucleoplasm (ortholog) NW_004955532 755997 766202 - 102030664 AGCD01070151;AGCD01070152;GBDI01323136;XM_005410166;XM_013507637;XM_013507638 XP_005410223;XP_013363091;XP_013363092 MODEL 8940864 ncrna LOC102015235 uncharacterized LOC102015235 NW_004955435 10300244 10325935 - 102015235 AGCD01033084;GBDI01112304;XR_001234839;XR_261677 MODEL 8917387 pseudo LOC102005781 putative 40S ribosomal protein S26-like 1 NW_004955462 251999 253115 + 102005781 AGCD01049074 MODEL 8807547 protein-coding Bdnf brain derived neurotrophic factor ENCODES a protein that exhibits neurotrophin TRKB receptor binding (ortholog); INVOLVED IN axon extension (ortholog); axon guidance (ortholog); axon target recognition (ortholog); PARTICIPATES IN brain-derived neurotrophic factor signaling pathway; ASSOCIATED WITH inner ear disease; acoustic neuroma (ortholog); acute stress disorder (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955476 6773244 6822201 - 102016703 AGCD01055340;AGCD01055341;GBDK01412054;XM_005401751;XM_005401752;XM_005401753;XM_013503014;XM_013503015 XP_005401808;XP_005401809;XP_005401810;XP_013358468;XP_013358469 MODEL 8901152 trna Trnas-cga transfer RNA serine (anticodon CGA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955501;NW_004955465;NW_004955465;NW_004955467 1580746;13301831;13138748;8814367 1580827;13301912;13138829;8814448 +;-;+;+ 101978805 AGCD01050590;AGCD01050597;AGCD01051472;AGCD01064055 MODEL 8890675 protein-coding Sar1a secretion associated Ras related GTPase 1A ENCODES a protein that exhibits amino acid sensor activity (ortholog); G protein activity (ortholog); GTPase activity (ortholog); INVOLVED IN cellular response to leucine starvation (ortholog); COPII vesicle coating (ortholog); COPII-coated vesicle cargo loading (ortholog); FOUND IN COPII vesicle coat (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955437 21075632 21093608 + 102015889 AGCD01034896;GBDF01048679;XM_005390065;XM_005390066;XM_005390067 XP_005390122;XP_005390123;XP_005390124 MODEL 8817253 protein-coding Klhl20 kelch like family member 20 ENCODES a protein that exhibits type II interferon binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN Golgi to endosome transport (ortholog); negative regulation of apoptotic process (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH intellectual disability (ortholog); Neurodevelopmental Disorders (ortholog); prostate cancer (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955406 13891589 13938964 + 102007622 AGCD01005955;GBDF01015418;XM_005374872 XP_005374929 MODEL 8735079 ncrna LOC102012261 uncharacterized LOC102012261 NW_004955450 975310 979893 + 102012261 AGCD01042346;GBDF01286154;XR_262513 MODEL 10199362 ncrna LOC106146931 uncharacterized LOC106146931 NW_004955505 4077534 4081101 + 106146931 AGCD01065084;AGCD01065085;GBDF01288398;XR_001231577 MODEL 8885251 protein-coding LOC102029966 uncharacterized LOC102029966 NW_004955418 92230 114095 + 102029966 AGCD01018666;AGCD01018667;AGCD01018668;GBDJ01396982;XM_013512889 XP_013368343 MODEL 8987996 protein-coding LOC102027544 uncharacterized LOC102027544 NW_004955495 2431525 2434033 + 102027544 AGCD01061774;GBDF01124824;XM_005405677 XP_005405734 MODEL 8764159 protein-coding LOC102004376 olfactory receptor 2D3-like NW_004955414 22643659 22649023 - 102004376 AGCD01015468;XM_013511769;XM_013511770 XP_013367223;XP_013367224 MODEL 8941266 protein-coding Bdp1 BDP1 general transcription factor IIIB subunit INVOLVED IN positive regulation of transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness 112 (ortholog); Deafness (ortholog); Hearing Loss (ortholog); FOUND IN nucleoplasm (ortholog); transcription factor TFIIIB complex (ortholog) NW_004955575 330683 430269 + 102027917 AGCD01075218;AGCD01075219;AGCD01075220;AGCD01075221;GBDF01178164;XM_005413925;XM_005413926;XM_005413927;XM_005413928;XM_005413930 XP_005413982;XP_005413983;XP_005413984;XP_005413985;XP_005413987 MODEL 8894546 pseudo LOC102007224 selenide, water dikinase 2-like NW_004955417 15154063 15155323 + 102007224 AGCD01018224 MODEL 8992261 pseudo LOC102003345 tubulin alpha-1C chain-like NW_004955483 529540 535066 - 102003345 AGCD01057622;XR_263877 MODEL 8728890 protein-coding LOC102009120 leukocyte-associated immunoglobulin-like receptor 1 NW_004955567 1481960 1491331 - 102009120 AGCD01074476;GBBH01229034;XM_013509284;XM_013509285;XM_013509286;XM_013509287;XM_013509288 XP_013364738;XP_013364739;XP_013364740;XP_013364741;XP_013364742 MODEL 8817295 protein-coding Pidd1 p53-induced death domain protein 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); INVOLVED IN apoptotic process (ortholog); apoptotic signaling pathway (ortholog); DNA damage response (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 75 (ortholog); developmental and epileptic encephalopathy 3 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endopeptidase complex (ortholog) NW_004955476 11325877 11331447 + 102009941 AGCD01055449;AGCD01055450;GBDK01398145;XM_013502998 XP_013358452 MODEL 626189175 snorna SNORD113-3 small nucleolar RNA, C/D box 113-3 8991556 protein-coding Ovch2 ovochymase 2 ENCODES a protein that exhibits serine-type endopeptidase activity (ortholog); INVOLVED IN fertilization (ortholog) NW_004955414 23449841 23466034 - 102011977 AGCD01015499;XM_005380204 XP_005380261 MODEL 39133341 snrna U4 U4 spliceosomal RNA 10202654 protein-coding LOC106146510 basic proline-rich protein-like NW_004955482 6625901 6626092 - 106146510 AGCD01057408;GBCQ01003987;GBDK01237721;XM_013503584 XP_013359038 MODEL 8963736 protein-coding Pmel premelanosome protein ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN eye development (ortholog); melanin biosynthetic process (ortholog); melanosome organization (ortholog); ASSOCIATED WITH coat/hair pigmentation trait (ortholog); melanoma (ortholog); FOUND IN cis-Golgi network membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955458 3544855 3555453 - 102025878 AGCD01047317;AGCD01047318;AGCD01047319;GBBH01103110;XM_005397275;XM_005397277;XM_005397278 XP_005397332;XP_005397334;XP_005397335 MODEL 10119388 ncrna LOC106148026 uncharacterized LOC106148026 NW_004955414 32975144 32981409 - 106148026 AGCD01015792;AGCD01015793;GBDF01089789;XR_001233134 MODEL 8940395 protein-coding LOC102019488 dehydrogenase/reductase SDR family member 7-like NW_004955466 9449071 9476610 + 102019488 AGCD01051041;GBCQ01037453;XM_005399182 XP_005399239 MODEL 9001999 protein-coding Epor erythropoietin receptor ENCODES a protein that exhibits erythropoietin receptor activity (ortholog); identical protein binding (ortholog); INVOLVED IN brain development (ortholog); cellular response to kainic acid (ortholog); decidualization (ortholog); PARTICIPATES IN erythropoietin signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); anemia (ortholog); Brain Hypoxia (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular region (ortholog) NW_004955495 2293587 2299302 - 102022714 AGCD01061763;GBCQ01062324;XM_005405664 XP_005405721 MODEL 8993443 protein-coding Treml1 triggering receptor expressed on myeloid cells like 1 INVOLVED IN calcium-mediated signaling (ortholog); platelet activation (ortholog); ASSOCIATED WITH systemic juvenile rheumatoid arthritis (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955437 7773279 7778197 - 102009104 AGCD01034467;GBDI01367631;XM_005389677;XM_005389678 XP_005389734;XP_005389735 MODEL 8960356 ncrna LOC102030669 uncharacterized LOC102030669 NW_004955545 2602687 2607954 + 102030669 AGCD01071911;GBCB01111245;XR_001232193;XR_001232194;XR_001232195;XR_264877;XR_264878 MODEL 10257698 protein-coding LOC106146374 uncharacterized LOC106146374 NW_004955476 10124505 10126313 + 106146374 AGCD01055413;GBDJ01148784;XM_013502936 XP_013358390 MODEL 8928631 protein-coding LOC102009913 keratin-associated protein 20-2-like NW_004955407 30225299 30225502 + 102009913 AGCD01007628;XM_005375649 XP_005375706 MODEL 8885275 protein-coding Tecpr2 tectonin beta-propeller repeat containing 2 INVOLVED IN protein exit from endoplasmic reticulum (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal dominant intellectual developmental disorder type FRA12A (ortholog); genetic disease (ortholog) NW_004955538 1658177 1733334 + 102030122 AGCD01071079;AGCD01071080;AGCD01071081;AGCD01071082;AGCD01071083;GBBH01051556;XM_005410750;XM_005410751;XM_005410752;XM_005410753;XM_005410754 XP_005410807;XP_005410808;XP_005410809;XP_005410810;XP_005410811 MODEL 9026487 protein-coding Slc25a38 solute carrier family 25 member 38 ENCODES a protein that exhibits glycine transmembrane transporter activity (ortholog); INVOLVED IN erythrocyte differentiation (ortholog); glycine import into mitochondrion (ortholog); PARTICIPATES IN heme biosynthetic pathway; ASSOCIATED WITH autosomal recessive pyridoxine-refractory sideroblastic anemia 2 (ortholog); genetic disease (ortholog); sideroblastic anemia (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955420 29988147 29996485 - 102012762 AGCD01021524;GBCC01041557;GBDJ01135342;XM_013513554 XP_013369008 MODEL 8710025 ncrna LOC102017953 uncharacterized LOC102017953 NW_004955455 12326192 12375978 + 102017953 AGCD01046033;AGCD01046034;AGCD01046035;AGCD01046036;GBCB01036113;XR_262857 MODEL 8747811 protein-coding Icos inducible T cell costimulator ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN cell-cell adhesion (ortholog); T cell costimulation (ortholog); T cell tolerance induction (ortholog); ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); arteriosclerosis (ortholog); celiac disease (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955457 10934390 10952318 - 102021098 AGCD01046960;GBDI01295537;XM_005397010;XM_005397011 XP_005397067;XP_005397068 MODEL 8812191 pseudo LOC102018311 olfactory receptor 8K3-like NW_004955511 1346191 1347156 + 102018311 AGCD01066365 MODEL 10233300 ncrna LOC106149223 uncharacterized LOC106149223 NW_004955440 13172323 13189586 - 106149223 AGCD01036442;XR_001235252 MODEL 8904492 ncrna LOC102006143 uncharacterized LOC102006143 NW_004955493 8176730 8196458 - 102006143 AGCD01061275;AGCD01061276;AGCD01061277;AGCD01061278;AGCD01061279;AGCD01061280;GBDK01245153;XR_001231286;XR_001231287;XR_264097 MODEL 8752508 protein-coding Eppk1 epiplakin 1 ENCODES a protein that exhibits intermediate filament binding (ortholog); keratin filament binding (ortholog); INVOLVED IN cytoskeleton organization (ortholog); intermediate filament bundle assembly (ortholog); intermediate filament organization (ortholog); ASSOCIATED WITH Chloracne (ortholog); myoepithelioma (ortholog); FOUND IN apicolateral plasma membrane (ortholog); basal part of cell (ortholog); bicellular tight junction (ortholog) NW_004955454 2512151 2526080 - 102015600 AGCD01045022;GBCE01166943;XM_005395819 XP_005395876 MODEL 8979643 pseudo LOC102028182 cytoplasmic protein NCK1 pseudogene NW_004955414 4110902 4112042 - 102028182 AGCD01014856 MODEL 8702352 pseudo LOC102011889 KATNB1-like protein 1 NW_004955426 24920133 24920909 - 102011889 AGCD01026698 MODEL 8899200 protein-coding Lactbl1 lactamase beta like 1 NW_004955452 3006140 3023205 - 102013579 AGCD01043909;AGCD01043910;GBDF01170835;XM_005395293 XP_005395350 MODEL 8804585 protein-coding LOC102023725 olfactory receptor 4C15-like NW_004955511 205120 206055 + 102023725 AGCD01066323;XM_005407937 XP_005407994 MODEL 9057686 pseudo LOC102004377 40S ribosomal protein S2-like NW_004955470 11454325 11473606 - 102004377 AGCD01052889 MODEL 9037887 protein-coding LOC102024027 granulocyte-macrophage colony-stimulating factor receptor subunit alpha-like NW_004955499 966081 982611 + 102024027 AGCD01063302;AGCD01063303;GBBH01118355;GBBH01118356;XM_013505607 XP_013361061 MODEL 8987948 protein-coding LOC102025087 zinc finger protein 709-like NW_004955407 43049470 43074123 - 102025087 AGCD01007903;AGCD01007904;GBDF01011131;XM_005375955;XM_013505817 XP_005376012;XP_013361271 MODEL 10119420 protein-coding LOC106150040 translation initiation factor IF-2-like NW_004955406 20155524 20156803 + 106150040 AGCD01006100;GBDF01152766;XM_013521368 XP_013376822 MODEL 8731327 pseudo LOC102003005 cTAGE family member 5-like NW_004955463 249195 252486 + 102003005 AGCD01049479 MODEL 8859812 ncrna LOC102026857 uncharacterized LOC102026857 NW_004955415 20988928 21004707 + 102026857 AGCD01016499;GBDI01331672;XR_260307 MODEL 9035663 protein-coding Sh3d19 SH3 domain containing 19 ENCODES a protein that exhibits proline-rich region binding (ortholog); INVOLVED IN positive regulation of membrane protein ectodomain proteolysis (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955471 5724303 5810868 - 102023256 AGCD01053113;GBDJ01086123;GBDK01085587;XM_013522884;XM_013522885;XM_013522886;XM_013522887 XP_013378338;XP_013378339;XP_013378340;XP_013378341 MODEL 9010573 ncrna LOC102021281 uncharacterized LOC102021281 NW_004955440 12437369 12460160 - 102021281 AGCD01036429;AGCD01036430;GBDF01158322;XR_001235233;XR_001235234;XR_262018 MODEL 8738992 pseudo LOC102015244 Golgi apparatus membrane protein TVP23 homolog B pseudogene NW_004955439 12044830 12045421 + 102015244 AGCD01035932 MODEL 8915234 trna Trnas-gcu transfer RNA serine (anticodon GCU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978842 AGCD01012398;AGCD01016984;AGCD01022970;AGCD01050591;AGCD01050613;AGCD01050626;AGCD01051471;AGCD01057630;AGCD01063790 MODEL 8856621 protein-coding Pmepa1 prostate transmembrane protein, androgen induced 1 ENCODES a protein that exhibits protein sequestering activity (ortholog); R-SMAD binding (ortholog); WW domain binding (ortholog); INVOLVED IN negative regulation of SMAD protein signal transduction (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); ASSOCIATED WITH breast cancer (ortholog); connective tissue disease (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN early endosome membrane (ortholog); endosome membrane (ortholog); Golgi membrane (ortholog) NW_004955445 1837084 1847214 + 102030250 AGCD01039346;GBCE01055931;XM_005392247 XP_005392304 MODEL 8919292 ncrna LOC102025443 uncharacterized LOC102025443 NW_004955410 27888752 27911095 + 102025443 AGCD01011227;AGCD01011228;GBDI01104294;XR_259871;XR_259872 MODEL 8943156 protein-coding Wnt6 Wnt family member 6 INVOLVED IN axis specification (ortholog); branching involved in ureteric bud morphogenesis (ortholog); epithelial-mesenchymal cell signaling (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog) NW_004955453 14547427 14560001 - 102003202 AGCD01044869;AGCD01044870;GBBH01046953;GBDJ01266063;XM_005395621 XP_005395678 MODEL 10086283 ncrna LOC106146649 uncharacterized LOC106146649 NW_004955489 3361269 3373029 + 106146649 AGCD01059890;XR_001231184 MODEL 626189150 snorna SNORD113-6 small nucleolar RNA, C/D box 113-6 8770359 protein-coding Spp1 secreted phosphoprotein 1 ENCODES a protein that exhibits calcium ion binding (ortholog); extracellular matrix binding (ortholog); integrin binding (ortholog); INVOLVED IN androgen catabolic process (ortholog); bone mineralization (ortholog); calcium ion homeostasis (ortholog); PARTICIPATES IN c-Jun N-terminal kinases MAPK signaling pathway; diabetic nephropathy pathway; fibroblast growth factor signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); adenocarcinoma (ortholog); Albuminuria (ortholog); FOUND IN apical part of cell (ortholog); cell projection (ortholog); cytoplasm (ortholog) NW_004955474 1914477 1922025 - 102012955 AGCD01054271;GBDI01224243;XM_005401330;XM_005401331;XM_013502779;XM_013502780 XP_005401387;XP_005401388;XP_013358233;XP_013358234 MODEL 8969933 protein-coding Sp4 Sp4 transcription factor ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN regulation of heart contraction (ortholog); regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); congenital heart disease (ortholog); dilated cardiomyopathy (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955410 23955408 24015667 + 102004910 AGCD01011120;AGCD01011121;GBCB01019139;XM_005377368;XM_005377370 XP_005377425;XP_005377427 MODEL 8814861 pseudo LOC102004378 transaldolase pseudogene NW_004955414 21830353 21833227 + 102004378 AGCD01015433 MODEL 8746645 protein-coding Ovgp1 oviductal glycoprotein 1 INVOLVED IN negative regulation of binding of sperm to zona pellucida (ortholog); ASSOCIATED WITH pneumoconiosis (ortholog); FOUND IN egg coat (ortholog); perivitelline space (ortholog) NW_004955435 14915168 14929171 - 102026667 AGCD01033258;GBDJ01015502;XM_005388948 XP_005389005 MODEL 8758197 ncrna LOC102012264 uncharacterized LOC102012264 NW_004955403 2898337 2898936 + 102012264 AGCD01001740;GBDJ01216344;XR_259140 MODEL 8820526 protein-coding Treml2 triggering receptor expressed on myeloid cells like 2 ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN T cell activation (ortholog); FOUND IN cell surface (ortholog) NW_004955437 7812005 7824344 - 102017382 AGCD01034469;GBDI01279546;XM_013517049;XM_013517050;XM_013517051 XP_013372503;XP_013372504;XP_013372505 MODEL 8929936 protein-coding LOC102008778 olfactory receptor 1361-like NW_004955442 14157622 14158563 - 102008778 AGCD01037803;XM_005391854 XP_005391911 MODEL 10355885 ncrna LOC106146932 uncharacterized LOC106146932 NW_004955506 4244448 4245977 + 106146932 AGCD01065330;GBCE01162485;XR_001231578 MODEL 8896874 protein-coding LOC102029967 putative olfactory receptor 3A4 NW_004955481 107749 108711 - 102029967 AGCD01056781;XM_005402911 XP_005402968 MODEL 8985935 protein-coding LOC102027545 intercellular adhesion molecule 1 NW_004955495 1612119 1614741 - 102027545 AGCD01061706;GBDJ01140637;GBDK01022443;XM_013505166 XP_013360620 MODEL 8984215 protein-coding LOC102026505 gamma-crystallin C NW_004955457 6985109 6986842 + 102026505 AGCD01046862;AGCD01046863;XM_005397113 XP_005397170 MODEL 9007949 ncrna LOC102018312 uncharacterized LOC102018312 NW_004955430 19090204 19090891 + 102018312 AGCD01029707;GBDF01190178;XR_261433 MODEL 9043617 pseudo LOC102003347 ras-related protein Rab-5A pseudogene NW_004955419 16896961 16899862 + 102003347 AGCD01020131;AGCD01020132;AGCD01020133 MODEL 8924737 protein-coding Icoslg inducible T cell costimulator ligand ENCODES a protein that exhibits identical protein binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN positive regulation of interleukin-4 production (ortholog); T follicular helper cell differentiation (ortholog); ASSOCIATED WITH celiac disease (ortholog); combined immunodeficiency (ortholog); genetic disease (ortholog); FOUND IN plasma membrane (ortholog) NW_004955407 41190875 41197521 + 102022674 AGCD01007861;GBBH01118928;GBDF01041989;XM_013505381 XP_013360835 MODEL 10092742 ncrna LOC106149224 uncharacterized LOC106149224 NW_004955440 15676324 15677876 + 106149224 AGCD01036496;GBDJ01383023;XR_001235254 MODEL 8712895 protein-coding Pmfbp1 polyamine modulated factor 1 binding protein 1 INVOLVED IN gene expression (ortholog); intracellular protein localization (ortholog); protein-containing complex assembly (ortholog); ASSOCIATED WITH oligospermia (ortholog); spermatogenic failure 31 (ortholog); Teratozoospermia (ortholog); FOUND IN cytoplasm (ortholog); sperm flagellum (ortholog); sperm head (ortholog) NW_004955484 4776358 4822312 - 102018933 AGCD01058232;GBDF01043820;XM_005403532;XM_013503846;XM_013503847 XP_005403589;XP_013359300;XP_013359301 MODEL 8786200 protein-coding LOC102009121 zinc finger protein 345-like NW_004955569 1713912 1862497 + 102009121 AGCD01074678;AGCD01074679;AGCD01074680;AGCD01074681;AGCD01074682;AGCD01074683;AGCD01074684;AGCD01074685;AGCD01074686;AGCD01074687;AGCD01074688;AGCD01074689;AGCD01074690;AGCD01074691;AGCD01074692;XM_013509366 XP_013364820 MODEL 8970340 protein-coding Pex6 peroxisomal biogenesis factor 6 ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); membrane protein dislocase activity (ortholog); INVOLVED IN peroxisome organization (ortholog); protein import into peroxisome matrix, receptor recycling (ortholog); protein import into peroxisome matrix, translocation (ortholog); ASSOCIATED WITH Brown-Vialetto-Van Laere syndrome 2 (ortholog); cerebellar ataxia (ortholog); Cognitive Dysfunction (ortholog); FOUND IN ATPase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955437 8945842 8964870 - 102018981 AGCD01034508;AGCD01034509;AGCD01034510;AGCD01034511;GBBH01063202;GBCE01054076;XM_013516895;XM_013516896 XP_013372349;XP_013372350 MODEL 9054182 protein-coding LOC102007228 olfactory receptor 1L8-like NW_004955419 5406757 5407689 - 102007228 AGCD01019806;XM_005382527 XP_005382584 MODEL 9049490 ncrna LOC102028183 uncharacterized LOC102028183 NW_004955415 5168613 5251995 + 102028183 AGCD01015991;GBCE01156600;XR_001233237;XR_001233238;XR_001233239;XR_260269 MODEL 9057470 protein-coding Ncln nicalin ENCODES a protein that exhibits ribosome binding (ortholog); INVOLVED IN multi-pass transmembrane protein insertion into ER membrane (ortholog); protein stabilization (ortholog); regulation of protein complex stability (ortholog); ASSOCIATED WITH Hirschsprung's disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); multi-pass translocon complex (ortholog); protein-containing complex (ortholog) NW_004955495 5222990 5238644 - 102024126 AGCD01061985;AGCD01061986;GBCB01024263;XM_005405846;XM_005405847 XP_005405903;XP_005405904 MODEL 10239043 ncrna LOC106146511 uncharacterized LOC106146511 NW_004955482 4899677 4904014 - 106146511 AGCD01057315;AGCD01057316;GBDF01231865;XR_001230974 MODEL 8917752 ncrna LOC102023727 uncharacterized LOC102023727 NW_004955512 653213 665302 + 102023727 AGCD01066620;GBDF01041146;XR_264438 MODEL 8711727 protein-coding Klhl21 kelch like family member 21 ENCODES a protein that exhibits cullin family protein binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN chromosome passenger complex localization to spindle midzone (ortholog); protein ubiquitination (ortholog); regulation of cytokinesis (ortholog); ASSOCIATED WITH Ependymomas (ortholog); FOUND IN centrosome (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); polar microtubule (ortholog) NW_004955486 6038291 6047814 + 102024915 AGCD01059105;GBCB01002232;GBCE01134534;XM_005404316 XP_005404373 MODEL 8720611 pseudo LOC102019496 60S ribosomal protein L7a pseudogene NW_004955414 25104299 25108383 + 102019496 AGCD01015573;AGCD01015574 MODEL 10225408 ncrna LOC106150041 uncharacterized LOC106150041 NW_004955462 2873492 2875878 - 106150041 AGCD01049189;GBBH01049625;XR_001236595;XR_001236596 MODEL 10208018 ncrna LOC106146375 uncharacterized LOC106146375 NW_004955476 1076253 1078438 + 106146375 AGCD01055200;GBDF01250662;XR_001230790 MODEL 8747298 protein-coding LOC102026859 interferon-induced transmembrane protein 3-like NW_004955476 11741486 11742684 - 102026859 AGCD01055474;GBDI01013683;XM_005401876 XP_005401933 MODEL 8722929 ncrna LOC102021283 uncharacterized LOC102021283 NW_004955441 9505985 9509614 + 102021283 AGCD01037022;GBCB01131781;XR_262065 MODEL 8854610 protein-coding Bean1 brain expressed associated with NEDD4 1 ASSOCIATED WITH spinocerebellar ataxia 31 (ortholog) NW_004955433 23017335 23059054 + 102015559 AGCD01031952;GBCE01163374;XM_005388509 XP_005388566 MODEL 8717913 protein-coding Tecr trans-2,3-enoyl-CoA reductase ENCODES a protein that exhibits very-long-chain enoyl-CoA reductase activity (ortholog); INVOLVED IN fatty acid elongation (ortholog); sphingolipid metabolic process (ortholog); very long-chain fatty acid biosynthetic process (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 14 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955415 33112098 33138810 + 102017231 AGCD01016751;AGCD01016752;GBDF01043421;XM_005381105 XP_005381162 MODEL 8982112 protein-coding Pierce1 piercer of microtubule wall 1 INVOLVED IN axoneme assembly (ortholog); cellular response to UV-C (ortholog); cilium movement (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); cytoplasm (ortholog) NW_004955513 4047764 4055692 - 102027889 AGCD01066914;GBBH01031983;XM_005408476;XM_013506706;XR_001231745;XR_001231747;XR_001231748 XP_005408533;XP_013362160 MODEL 8995744 ncrna LOC102011891 uncharacterized LOC102011891 NW_004955429 17730248 17732306 - 102011891 AGCD01028865;GBDF01041050;XR_261353 MODEL 8749792 protein-coding Lad1 ladinin 1 FOUND IN actin cytoskeleton (ortholog) NW_004955406 37510675 37526178 - 102015371 AGCD01006576;GBCQ01034309;XM_005375181;XM_013522219 XP_005375238;XP_013377673 MODEL 8843675 protein-coding Wnt7a Wnt family member 7A ENCODES a protein that exhibits cytokine activity (ortholog); frizzled binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN angiogenesis (ortholog); asymmetric protein localization involved in cell fate determination (ortholog); canonical Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; Wnt signaling, non-canonical pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955429 12647993 12693998 + 102004623 AGCD01028728;GBDJ01171100;XM_005386976 XP_005387033 MODEL 10212619 ncrna LOC106148027 uncharacterized LOC106148027 NW_004955414 31607675 31621686 - 106148027 AGCD01015758;AGCD01015759;GBDF01080257;XR_001233138 MODEL 626189170 snorna SNORD113-7 small nucleolar RNA, C/D box 113-7 8940178 ncrna LOC102009915 uncharacterized LOC102009915 NW_004955458 5401003 5402675 + 102009915 AGCD01047487;GBBH01073358;XR_262984 MODEL 10316733 ncrna LOC106146650 uncharacterized LOC106146650 NW_004955407 34189475 34304594 + 106146650 AGCD01007719;GBBH01055656;XR_001231186;XR_001231188 MODEL 8969195 ncrna LOC102030671 uncharacterized LOC102030671 NW_004955547 150030 164651 - 102030671 AGCD01072134;AGCD01072135;AGCD01072136;GBDF01076880;XR_264895 MODEL 8988544 protein-coding LOC102020494 cytochrome c oxidase subunit 7B, mitochondrial INVOLVED IN central nervous system development (ortholog); ASSOCIATED WITH genetic disease (ortholog); linear skin defects with multiple congenital anomalies 1 (ortholog); linear skin defects with multiple congenital anomalies 2 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955557 1341934 1348610 + 102020494 AGCD01073290;GBCB01003743;XM_005412627 XP_005412684 MODEL 8938520 protein-coding LOC102025089 olfactory receptor 9-like NW_004955458 3200530 3201468 - 102025089 AGCD01047278;XM_013520865 XP_013376319 MODEL 8935528 pseudo LOC102029260 twinfilin-1 pseudogene NW_004955453 4946554 4949033 - 102029260 AGCD01044701 MODEL 8827805 protein-coding LOC102003007 vomeronasal type-1 receptor 4-like NW_004955465 13056058 13056990 - 102003007 AGCD01050581;XM_005399004 XP_005399061 MODEL 8916184 pseudo LOC102015245 RING finger and transmembrane domain-containing protein 1 pseudogene NW_004955547 363840 367226 + 102015245 AGCD01072151 MODEL 15036854 trna Trnas-gga transfer RNA serine (anticodon GGA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978803 9035787 pseudo LOC102025446 U3 small nucleolar RNA-associated protein 14 homolog A-like NW_004955465 12205692 12208558 + 102025446 AGCD01050541 MODEL 9016517 protein-coding Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 ENCODES a protein that exhibits beta-1 adrenergic receptor binding (ortholog); GTPase binding (ortholog); identical protein binding (ortholog); INVOLVED IN modulation of excitatory postsynaptic potential (ortholog); positive regulation of synaptic vesicle endocytosis (ortholog); regulation of synaptic vesicle endocytosis (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; ASSOCIATED WITH acute myeloid leukemia (ortholog); hepatocellular carcinoma (ortholog); high grade glioma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955495 4502173 4531758 + 102009625 AGCD01061926;AGCD01061927;GBDF01121282;XM_005405800;XM_005405801 XP_005405857;XP_005405858 MODEL 9020602 ncrna LOC102005782 uncharacterized LOC102005782 NW_004955410 28867225 28871620 + 102005782 AGCD01011262;AGCD01011263;GBDJ01369351;XR_259877 MODEL 39133342 snrna U4 U4 spliceosomal RNA 8969148 protein-coding Ovol1 ovo like transcriptional repressor 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN epidermis development (ortholog); germline cell cycle switching, mitotic to meiotic cell cycle (ortholog); kidney development (ortholog); ASSOCIATED WITH atopic dermatitis (ortholog); pilomatrixoma (ortholog); FOUND IN nucleus (ortholog) NW_004955422 19524420 19528938 - 102028647 AGCD01023015;GBDI01108277;GBDK01176882;XM_013513853 XP_013369307 MODEL 8889380 protein-coding Eprs1 glutamyl-prolyl-tRNA synthetase 1 ENCODES a protein that exhibits glutamate-tRNA ligase activity (ortholog); GTPase binding (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); cellular response to type II interferon (ortholog); glutamyl-tRNA aminoacylation (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); hypomyelinating leukodystrophy 15 (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955520 3550558 3606015 + 102025157 AGCD01068105;AGCD01068106;GBDF01046961;XM_005409277 XP_005409334 MODEL 8985166 ncrna LOC102029973 uncharacterized LOC102029973 NW_004955486 4863590 4867976 - 102029973 AGCD01059070;GBDF01304265;XR_263953 MODEL 8807886 protein-coding LOC102027546 zinc finger protein 709-like NW_004955496 8233112 8261597 + 102027546 AGCD01062393;AGCD01062394;GBDJ01303660;XM_013505394 XP_013360848 MODEL 9007293 protein-coding Sar1b secretion associated Ras related GTPase 1B ENCODES a protein that exhibits amino acid sensor activity (ortholog); G protein activity (ortholog); GTPase activity (ortholog); INVOLVED IN cellular response to leucine starvation (ortholog); COPII vesicle coating (ortholog); COPII-coated vesicle cargo loading (ortholog); ASSOCIATED WITH chylomicron retention disease (ortholog); genetic disease (ortholog); Hereditary Pancreatitis (ortholog); FOUND IN COPII vesicle coat (ortholog); cytosol (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955408 5737197 5761228 - 102018896 AGCD01008150;AGCD01008151;GBBH01186879;XM_005376158 XP_005376215 MODEL 8815960 ncrna LOC102018314 uncharacterized LOC102018314 NW_004955515 3174164 3177414 - 102018314 AGCD01067274;GBCQ01086323;XR_264521 MODEL 8897081 pseudo LOC102007231 ubiquitin-40S ribosomal protein S27a-like NW_004955484 7752603 7753800 - 102007231 AGCD01058345 MODEL 8994743 protein-coding Spp2 secreted phosphoprotein 2 INVOLVED IN protein-containing complex assembly (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955453 2130606 2158603 - 102003726 AGCD01044623;GBDI01278106;XM_005395331 XP_005395388 MODEL 8887177 protein-coding Tecrl trans-2,3-enoyl-CoA reductase like ASSOCIATED WITH catecholaminergic polymorphic ventricular tachycardia (ortholog); catecholaminergic polymorphic ventricular tachycardia 3 (ortholog); long QT syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955447 8075470 8189509 + 102017076 AGCD01040829;AGCD01040830;AGCD01040831;AGCD01040832;AGCD01040833;AGCD01040834;AGCD01040835;GBDK01203482;XM_005392848 XP_005392905 MODEL 8906653 protein-coding Sp5 Sp5 transcription factor ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN bone morphogenesis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); post-anal tail morphogenesis (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog) NW_004955449 4076872 4079887 - 102023758 AGCD01041874;GBDJ01193009;XM_005393244 XP_005393301 MODEL 8892327 protein-coding Pex7 peroxisomal biogenesis factor 7 ENCODES a protein that exhibits enzyme binding (ortholog); peroxisome matrix targeting signal-2 binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN endochondral ossification (ortholog); ether lipid biosynthetic process (ortholog); fatty acid beta-oxidation (ortholog); ASSOCIATED WITH connective tissue disease (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); peroxisomal matrix (ortholog); peroxisome (ortholog) NW_004955439 71302 138278 - 102019736 AGCD01035579;GBCB01020859;XM_005390459;XM_005390461 XP_005390516;XP_005390518 MODEL 10089825 ncrna LOC106146512 uncharacterized LOC106146512 NW_004955482 4914000 4915185 - 106146512 AGCD01057316;GBDF01236206;XR_001230975 MODEL 8955964 pseudo LOC102019498 eukaryotic peptide chain release factor subunit 1-like NW_004955415 4586723 4588014 + 102019498 AGCD01015975 MODEL 8738277 protein-coding LOC102004387 C-C motif chemokine 8-like NW_004955481 9082226 9083739 + 102004387 AGCD01057094;GBBH01002161;XM_005402840 XP_005402897 MODEL 9052000 pseudo LOC102009916 KATNB1-like protein 1 pseudogene NW_004955458 3895009 3896301 + 102009916 AGCD01047353 MODEL 8724020 ncrna LOC102012268 uncharacterized LOC102012268 NW_004955403 25880625 25907260 + 102012268 AGCD01002295;GBDF01251079;XR_001233582;XR_001233583;XR_259202 MODEL 9055542 ncrna LOC102006144 uncharacterized LOC102006144 NW_004955494 945399 951856 - 102006144 AGCD01061388;GBBH01099440;XR_001231328;XR_001231329;XR_001231330 MODEL 10097035 ncrna LOC106146933 uncharacterized LOC106146933 NW_004955506 4636147 4640266 - 106146933 AGCD01065342;GBCB01059698;XR_001231579 MODEL 9055587 pseudo LOC102008782 protein SET-like NW_004955563 171952 176650 - 102008782 AGCD01074050;AGCD01074051 MODEL 9037929 pseudo LOC102026508 uncharacterized LOC102026508 NW_004955410 28879730 28883537 + 102026508 AGCD01011264 MODEL 9015895 pseudo LOC102024028 serine-rich coiled-coil domain-containing protein 2 pseudogene NW_004955425 25294131 25298646 + 102024028 AGCD01025912;XR_261170 MODEL 9067231 pseudo LOC102028184 protein C12orf4 pseudogene NW_004955473 8562572 8563712 - 102028184 AGCD01054055 MODEL 8857153 protein-coding Pierce2 piercer of microtubule wall 2 INVOLVED IN axoneme assembly (ortholog); cilium movement (ortholog); determination of left/right symmetry (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); sperm flagellum (ortholog) NW_004955409 523414 530630 - 102020534 AGCD01009154;GBDJ01171942;XM_013510271;XR_001232628;XR_001232629 XP_013365725 MODEL 8979412 pseudo LOC102017959 olfactory receptor 6C3-like NW_004955458 2571769 2572702 + 102017959 AGCD01047237 MODEL 8785931 protein-coding Pml PML nuclear body scaffold ENCODES a protein that exhibits cobalt ion binding (ortholog); identical protein binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); apoptotic process (ortholog); branching involved in mammary gland duct morphogenesis (ortholog); PARTICIPATES IN mTOR signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); breast ductal carcinoma (ortholog); clear cell renal cell carcinoma (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955450 3654854 3692057 - 102020735 AGCD01042439;AGCD01042440;AGCD01042441;GBDJ01009152;XM_013518918;XM_013518919;XM_013518920;XM_013518921;XR_001235868 XP_013374372;XP_013374373;XP_013374374;XP_013374375 MODEL 8865639 protein-coding LOC102011892 olfactory receptor 9G4 NW_004955511 1843967 1844917 - 102011892 AGCD01066381;XM_005407980 XP_005408037 MODEL 8738905 protein-coding LOC102009123 transmembrane protease serine 11E NW_004955447 4505454 4611439 + 102009123 AGCD01040721;AGCD01040722;AGCD01040723;AGCD01040724;AGCD01040725;GBDF01013955;XM_005392824;XM_005392826;XM_013518541 XP_005392881;XP_005392883;XP_013373995 MODEL 8981821 protein-coding Klhl22 kelch like family member 22 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN cell division (ortholog); cellular response to amino acid stimulus (ortholog); cellular response to L-leucine (ortholog); FOUND IN centrosome (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955442 19010971 19051300 - 102015670 AGCD01038030;AGCD01038031;GBDK01143136;XM_005391799;XM_005391800;XM_005391801;XM_005391802;XM_013517900;XM_013517901 XP_005391856;XP_005391857;XP_005391858;XP_005391859;XP_013373354;XP_013373355 MODEL 126903043 protein-coding TMEM80 transmembrane protein 80 10366263 ncrna LOC106150042 uncharacterized LOC106150042 NW_004955462 7321314 7324829 - 106150042 AGCD01049300;XR_001236597 MODEL 8812282 protein-coding LOC102020495 orphan sodium- and chloride-dependent neurotransmitter transporter NTT5-like NW_004955559 1511172 1525751 + 102020495 AGCD01073647;GBDF01128186;XM_005412896;XM_005412897;XM_005412898 XP_005412953;XP_005412954;XP_005412955 MODEL 8891122 ncrna LOC102029264 uncharacterized LOC102029264 NW_004955456 3687247 3692399 + 102029264 AGCD01046279;GBDF01207569;XR_262879 MODEL 8728655 ncrna LOC102026860 uncharacterized LOC102026860 NW_004955416 13006168 13011418 + 102026860 AGCD01017218;GBDF01252214;XR_260379 MODEL 10263987 ncrna LOC106146376 uncharacterized LOC106146376 NW_004955476 9378642 9404703 - 106146376 AGCD01055382;GBBH01056694;XR_001230794 MODEL 8884575 pseudo LOC102003008 DPY30 domain-containing protein 2 pseudogene NW_004955413 2319331 2319955 + 102003008 AGCD01013544 MODEL 8732450 pseudo LOC102021286 methylosome subunit pICln pseudogene NW_004955559 1489054 1489989 + 102021286 AGCD01073647;XM_005412899 MODEL 8731885 ncrna LOC102025447 uncharacterized LOC102025447 NW_004955466 11064299 11081049 + 102025447 AGCD01051083;GBDF01226388;XR_001236778;XR_263304;XR_263305 MODEL 8750732 protein-coding Becn1 beclin 1 ENCODES a protein that exhibits GTPase binding (ortholog); identical protein binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN amyloid-beta metabolic process (ortholog); autophagosome assembly (ortholog); autophagosome maturation (ortholog); PARTICIPATES IN autophagy pathway; inositol metabolic pathway; mitochondrial autophagy pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); acute necrotizing pancreatitis (ortholog); alcohol-associated liver disease (ortholog); FOUND IN autophagosome (ortholog); cytoplasm (ortholog); cytoplasmic side of mitochondrial outer membrane (ortholog) NW_004955451 16616595 16625731 - 102024414 AGCD01043696;GBCQ01005143;XM_005394481;XM_013519257 XP_005394538;XP_013374711 MODEL 8834264 protein-coding LOC102003349 uncharacterized LOC102003349 NW_004955420 23430746 23448623 - 102003349 AGCD01021246;AGCD01021247;AGCD01021248;GBDJ01304436;XM_005383606 XP_005383663 MODEL 8915196 pseudo LOC102027547 calcyclin-binding protein pseudogene NW_004955425 20047680 20048392 + 102027547 AGCD01025713 MODEL 8843659 pseudo LOC102029976 protein slowmo homolog 2-like NW_004955421 16299786 16300334 + 102029976 AGCD01021997 MODEL 8984656 protein-coding Ovol2 ovo like zinc finger 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN angiogenesis (ortholog); dorsal/ventral pattern formation (ortholog); embryonic digestive tract morphogenesis (ortholog); ASSOCIATED WITH pilomatrixoma (ortholog); posterior polymorphous corneal dystrophy 1 (ortholog); FOUND IN nucleus (ortholog) NW_004955415 26825284 26843438 - 102012638 AGCD01016608;GBDK01135062;XM_005380915 XP_005380972 MODEL 626189148 snorna SNORD113-8 small nucleolar RNA, C/D box 113-8 8837703 protein-coding Saraf store-operated calcium entry associated regulatory factor INVOLVED IN regulation of store-operated calcium entry (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog) NW_004955463 6549495 6567589 - 102023238 AGCD01049684;GBDK01014827;XM_005398364 XP_005398421 MODEL 8871884 protein-coding Lag3 lymphocyte activating 3 ENCODES a protein that exhibits MHC class II protein binding (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); negative regulation of interleukin-2 production (ortholog); negative regulation of regulatory T cell differentiation (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955413 4379529 4385456 + 102029278 AGCD01013612;GBBH01189509;XM_005378825 XP_005378882 MODEL 8810179 ncrna LOC102025091 uncharacterized LOC102025091 NW_004955409 24554548 24560508 + 102025091 AGCD01010087;GBDF01074865;XR_001232659;XR_259792 MODEL 10343510 pseudo LOC106146651 60S ribosomal protein L39 pseudogene NW_004955489 332719 332987 + 106146651 AGCD01059795 MODEL 8763680 protein-coding Tecta tectorin alpha ENCODES a protein that exhibits extracellular matrix structural constituent (ortholog); INVOLVED IN auditory receptor cell stereocilium organization (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 12 (ortholog); autosomal recessive nonsyndromic deafness 21 (ortholog); Hearing Loss (ortholog); FOUND IN extracellular matrix (ortholog) NW_004955412 22062618 22132037 + 102014030 AGCD01013033;GBBH01101121;XM_005378359 XP_005378416 MODEL 9028282 pseudo LOC102015248 thioredoxin-related transmembrane protein 1-like NW_004955442 16782819 16799267 - 102015248 AGCD01037913;AGCD01037914;AGCD01037915;AGCD01037916 MODEL 9067860 protein-coding Piezo1 piezo type mechanosensitive ion channel component 1 (Er blood group) ENCODES a protein that exhibits identical protein binding (ortholog); mechanosensitive monoatomic cation channel activity (ortholog); mechanosensitive monoatomic ion channel activity (ortholog); INVOLVED IN detection of mechanical stimulus (ortholog); monoatomic cation transport (ortholog); positive regulation of cell-cell adhesion mediated by integrin (ortholog); ASSOCIATED WITH dehydrated hereditary stomatocytosis 1 (ortholog); genetic disease (ortholog); hemolytic anemia (ortholog); FOUND IN cuticular plate (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955541 2618167 2655349 - 102027113 AGCD01071419;GBDI01005578;XM_013507959;XM_013507960;XM_013507961;XM_013507962 XP_013363413;XP_013363414;XP_013363415;XP_013363416 MODEL 8708009 pseudo LOC102019505 AP-3 complex subunit sigma-1 pseudogene NW_004955419 14065813 14066477 + 102019505 AGCD01020010 MODEL 39133343 snrna U4 U4 spliceosomal RNA 9024072 protein-coding LOC102009925 olfactory receptor 8B12-like NW_004955412 25567776 25568708 - 102009925 AGCD01013160;XM_005378426 XP_005378483 MODEL 8856463 protein-coding Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 ENCODES a protein that exhibits identical protein binding (ortholog); lipid binding (ortholog); protein kinase binding (ortholog); INVOLVED IN cellular response to brain-derived neurotrophic factor stimulus (ortholog); dendrite extension (ortholog); lipid tube assembly (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; FOUND IN cytoplasm (ortholog); early endosome (ortholog); glutamatergic synapse (ortholog) NW_004955434 20332727 20381320 + 102022955 AGCD01032615;AGCD01032616;GBCQ01093746;XM_013516394 XP_013371848 MODEL 8979836 protein-coding Slc25a39 solute carrier family 25 member 39 ENCODES a protein that exhibits 2 iron, 2 sulfur cluster binding (ortholog); glutathione transmembrane transporter activity (ortholog); INVOLVED IN cellular response to iron ion (ortholog); glutathione import into mitochondrion (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955451 17352853 17356466 - 102012272 AGCD01043743;AGCD01043744;GBDI01005619;GBDJ01010093;XM_013519261 XP_013374715 MODEL 8971993 ncrna LOC102023730 uncharacterized LOC102023730 NW_004955517 2354221 2363914 + 102023730 AGCD01067624;AGCD01067625;GBDK01178985;XR_264550 MODEL 10065011 ncrna LOC106146377 uncharacterized LOC106146377 NW_004955402 61023360 61024775 + 106146377 AGCD01001619;GBDJ01299627;XR_001230798 MODEL 8841814 protein-coding Eps15 epidermal growth factor receptor pathway substrate 15 ENCODES a protein that exhibits identical protein binding (ortholog); polyubiquitin modification-dependent protein binding (ortholog); ubiquitin binding (ortholog); INVOLVED IN clathrin coat assembly (ortholog); endocytic recycling (ortholog); Golgi to endosome transport (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; Notch signaling pathway; FOUND IN aggresome (ortholog); AP-2 adaptor complex (ortholog); apical plasma membrane (ortholog) NW_004955464 7569570 7688098 + 102025773 AGCD01050065;AGCD01050066;AGCD01050067;GBCB01020993;XM_005398604;XM_013521700;XM_013521701;XM_013521702 XP_005398661;XP_013377154;XP_013377155;XP_013377156 MODEL 8993982 protein-coding LOC102008784 leukocyte immunoglobulin-like receptor subfamily A member 2 NW_004955567 1128512 1147473 + 102008784 AGCD01074460;GBDK01141152;XM_013509292;XM_013509293;XM_013509294;XM_013509295;XM_013509296;XM_013509297;XM_013509298;XM_013509299;XR_001232407 XP_013364746;XP_013364747;XP_013364748;XP_013364749;XP_013364750;XP_013364751;XP_013364752;XP_013364753 MODEL 8953168 ncrna LOC102026509 uncharacterized LOC102026509 NW_004955411 5202371 5265250 + 102026509 AGCD01011609;AGCD01011610;AGCD01011611;AGCD01011612;AGCD01011613;AGCD01011614;AGCD01011615;AGCD01011616;AGCD01011617;AGCD01011618;AGCD01011619;AGCD01011620;AGCD01011621;XR_259921 MODEL 10258926 ncrna LOC106148028 uncharacterized LOC106148028 NW_004955403 924436 925724 + 106148028 AGCD01001712;GBDF01287373;XR_001233140 MODEL 8872280 pseudo LOC102018315 L-lactate dehydrogenase A chain pseudogene NW_004955432 2293262 2295667 - 102018315 AGCD01030614 MODEL 8725918 ncrna LOC102030672 uncharacterized LOC102030672 NW_004955556 917499 934466 + 102030672 AGCD01073179;GBCB01076510;XR_264974 MODEL 8710499 ncrna LOC102007232 uncharacterized LOC102007232 NW_004955484 9389101 9390143 - 102007232 AGCD01058415;GBDF01039018;XR_001231046 MODEL 8759902 ncrna LOC102017963 uncharacterized LOC102017963 NW_004955463 4854737 4856857 - 102017963 AGCD01049619;GBCQ01156510;XR_263147 MODEL 8995125 protein-coding Pfas phosphoribosylformylglycinamidine synthase ENCODES a protein that exhibits phosphoribosylformylglycinamidine synthase activity (ortholog); INVOLVED IN 'de novo' AMP biosynthetic process (ortholog); 'de novo' IMP biosynthetic process (ortholog); 'de novo' XMP biosynthetic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH colon adenocarcinoma (ortholog); Experimental Diabetes Mellitus (ortholog); hepatocellular carcinoma (ortholog) NW_004955467 8640044 8660950 - 102020102 AGCD01051464;AGCD01051465;GBDJ01388665;XM_005399417;XM_005399420;XM_005399421;XM_013522183;XM_013522184 XP_005399474;XP_005399477;XP_005399478;XP_013377637;XP_013377638 MODEL 8793435 protein-coding Pmm1 phosphomannomutase 1 ENCODES a protein that exhibits phosphomannomutase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); mannose metabolic process (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; ASSOCIATED WITH GLOBAL DEVELOPMENTAL DELAY, ABSENT OR HYPOPLASTIC CORPUS CALLOSUM, AND DYSMORPHIC FACIES (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); neuronal cell body (ortholog) NW_004955413 27090291 27097088 - 102020552 AGCD01014492;GBDI01127252;XM_005379355 XP_005379412 MODEL 9005600 ncrna LOC102012270 uncharacterized LOC102012270 NW_004955451 13227860 13233237 + 102012270 AGCD01043462;GBDK01199688;XR_262601 MODEL 9049507 trna Trnas-uga transfer RNA serine (anticodon UGA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955483;NW_004955425;NW_004955465 756793;20176554;13268508 756874;20176635;13268589 +;+;+ 101978804 AGCD01025718;AGCD01050595;AGCD01057629 MODEL 8886062 protein-coding Klhl23 kelch like family member 23 NW_004955449 4839500 4856109 - 102025741 AGCD01041900;AGCD01041901;GBCB01005874;GBDJ01062249;XM_013518729 XP_013374183 MODEL 8729341 pseudo LOC102029265 myosin light chain 6B pseudogene NW_004955456 10998880 10999480 + 102029265 AGCD01046537 MODEL 10216557 ncrna LOC106146934 uncharacterized LOC106146934 NW_004955506 162455 165304 - 106146934 AGCD01065216;XR_001231582 MODEL 8937963 protein-coding Tectb tectorin beta ENCODES a protein that exhibits extracellular matrix structural constituent (ortholog); FOUND IN extracellular matrix (ortholog) NW_004955431 17413841 17425192 + 102028118 AGCD01030408;XM_005387760 XP_005387817 MODEL 9003786 pseudo LOC102006151 cyclin-dependent-like kinase 5 pseudogene NW_004955503 2378754 2379747 - 102006151 AGCD01064606 MODEL 8701978 pseudo LOC102025454 olfactory receptor 51A4-like NW_004955414 20541489 20544230 - 102025454 AGCD01015380 MODEL 8984404 protein-coding Wnt7b Wnt family member 7B ENCODES a protein that exhibits chemoattractant activity involved in axon guidance (ortholog); frizzled binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN anatomical structure regression (ortholog); angiogenesis (ortholog); apoptotic process involved in blood vessel morphogenesis (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; Wnt signaling, the planar cell polarity pathway; ASSOCIATED WITH breast cancer (ortholog); breast fibroadenoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog) NW_004955413 30146185 30185693 - 102005922 AGCD01014601;AGCD01014602;GBBH01026258;GBCE01031612;XM_013511611;XM_013511613 XP_013367065;XP_013367067 MODEL 8886882 ncrna LOC102028193 uncharacterized LOC102028193 NW_004955482 887958 900504 + 102028193 AGCD01057190;GBBH01144865;XR_263813 MODEL 10076469 ncrna LOC106146513 uncharacterized LOC106146513 NW_004955482 8005336 8009562 - 106146513 AGCD01057496;GBDF01128552;XR_001230976 MODEL 8761309 protein-coding LOC102009124 uncharacterized LOC102009124 NW_004955447 15117933 15159860 - 102009124 AGCD01041033;AGCD01041034;AGCD01041035;AGCD01041036;AGCD01041037;GBDF01196985;XM_013518482 XP_013373936 MODEL 10299661 ncrna LOC106149225 uncharacterized LOC106149225 NW_004955440 14007611 14190374 + 106149225 AGCD01036457;AGCD01036458;AGCD01036459;AGCD01036460;AGCD01036461;AGCD01036462;AGCD01036463;GBDF01040542;XR_001235257;XR_001235258 MODEL 9002159 pseudo LOC102005784 SH2B adapter protein 1 pseudogene NW_004955464 13239686 13248332 - 102005784 AGCD01050265;XM_005398719 MODEL 8899020 pseudo LOC102007233 THAP domain-containing protein 5 pseudogene NW_004955419 22760508 22761334 - 102007233 AGCD01020307 MODEL 8726923 pseudo LOC102020496 long-chain-fatty-acid--CoA ligase 4 pseudogene NW_004955567 204423 206599 - 102020496 AGCD01074386 MODEL 626189140 snorna SNORD113-9 small nucleolar RNA, C/D box 113-9 8941448 protein-coding Lage3 L antigen family member 3 ASSOCIATED WITH Galloway-Mowat syndrome (ortholog); Galloway-Mowat syndrome 2 (ortholog); FOUND IN cytoplasm (ortholog); EKC/KEOPS complex (ortholog); nuclear body (ortholog) NW_004955580 992190 993617 - 102004533 AGCD01075636;GBDJ01279132;XM_005414204 XP_005414261 MODEL 8814674 pseudo LOC102025093 zinc finger protein 23-like NW_004955460 9964512 9970986 - 102025093 AGCD01048565 MODEL 10152612 pseudo LOC106146652 60S ribosomal protein L39 pseudogene NW_004955489 401042 401212 + 106146652 AGCD01059801 MODEL 8842862 protein-coding Ncmap non-compact myelin associated protein ENCODES a protein that exhibits structural constituent of myelin sheath (ortholog); INVOLVED IN peripheral nervous system myelin formation (ortholog); positive regulation of myelination (ortholog); FOUND IN paranode region of axon (ortholog); plasma membrane (ortholog); Schmidt-Lanterman incisure (ortholog) NW_004955452 4335411 4380972 + 102030032 AGCD01043973;AGCD01043974;AGCD01043975;AGCD01043976;AGCD01043977;AGCD01043978;AGCD01043979;AGCD01043980;GBDJ01061735;XM_005394808;XM_005394809;XM_005394810;XM_005394811;XR_262648 XP_005394865;XP_005394866;XP_005394867;XP_005394868 MODEL 8972858 protein-coding LOC102026864 olfactory receptor 3A1-like NW_004955481 164296 165000 + 102026864 AGCD01056783;XM_013503359 XP_013358813 MODEL 8816060 pseudo LOC102024030 E3 ubiquitin-protein ligase Praja-2 pseudogene NW_004955503 7343198 7345404 + 102024030 AGCD01064789 MODEL 9013604 pseudo LOC102021290 uncharacterized LOC102021290 NW_004955447 10934204 10968303 + 102021290 AGCD01040895 MODEL 8930203 protein-coding Begain brain enriched guanylate kinase associated INVOLVED IN evoked excitatory postsynaptic potential (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); papillary thyroid carcinoma (ortholog); FOUND IN dendrite (ortholog); glutamatergic synapse (ortholog); neuronal cell body (ortholog) NW_004955438 21572080 21580311 - 102018650 AGCD01035547;GBDF01209194;XM_013517281 XP_013372735 MODEL 8901153 protein-coding LOC102003352 inositol 1,4,5-trisphosphate receptor type 1 NW_004955421 8603264 8928051 - 102003352 AGCD01021821;AGCD01021822;AGCD01021823;AGCD01021824;AGCD01021825;AGCD01021826;GBCE01055382;GBDF01285678;XM_013513709;XM_013513710;XM_013513711;XM_013513712;XM_013513713;XM_013513714;XM_013513715 XP_013369163;XP_013369164;XP_013369165;XP_013369166;XP_013369167;XP_013369168;XP_013369169 MODEL 8763667 protein-coding Sp6 Sp6 transcription factor INVOLVED IN epithelial to mesenchymal transition (ortholog); odontogenesis (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 1K (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955451 13264537 13270104 + 102013239 AGCD01043463;AGCD01043464;GBDF01261731;XM_005394262 XP_005394319 MODEL 10077641 ncrna LOC106146653 uncharacterized LOC106146653 NW_004955489 381572 382583 + 106146653 AGCD01059799;GBDF01266052;XR_001231187 MODEL 8753293 pseudo LOC102029979 60S ribosomal protein L21-like NW_004955490 9179792 9180282 - 102029979 AGCD01060306 MODEL 8922879 protein-coding LOC102011894 olfactory receptor 5AS1-like NW_004955511 949994 950932 + 102011894 AGCD01066346;XM_005408219 XP_005408276 MODEL 9009375 protein-coding Slc25a4 solute carrier family 25 member 4 ENCODES a protein that exhibits ATP:ADP antiporter activity (ortholog); enzyme binding (ortholog); oxidative phosphorylation uncoupler activity (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); ADP transport (ortholog); apoptotic mitochondrial changes (ortholog); PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH alcoholic cardiomyopathy (ortholog); Alzheimer's disease (ortholog); autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 2 (ortholog); FOUND IN membrane (ortholog); membrane raft (ortholog); mitochondrial inner membrane (ortholog) NW_004955403 23878329 23882322 - 102003079 AGCD01002262;AGCD01002263;GBCB01005621;XM_005373479 XP_005373536 MODEL 8934377 protein-coding LOC102027548 olfactory receptor 8S1-like NW_004955500 7477462 7480430 + 102027548 AGCD01063926;XM_005406715 XP_005406772 MODEL 9035917 pseudo LOC102004389 atlastin-2-like NW_004955482 7328108 7330635 + 102004389 AGCD01057455;AGCD01057456 MODEL 8905192 pseudo LOC102018316 60S ribosomal protein L9 pseudogene NW_004955518 3771000 3771572 - 102018316 AGCD01067809 MODEL 8703493 protein-coding Eps15l1 epidermal growth factor receptor pathway substrate 15 like 1 INVOLVED IN synaptic vesicle endocytosis (ortholog); FOUND IN clathrin coat of coated pit (ortholog); presynapse (ortholog) NW_004955524 1264035 1309394 + 102029784 AGCD01068741;AGCD01068742;GBCE01030448;XM_013507228;XM_013507229;XM_013507230;XM_013507231 XP_013362682;XP_013362683;XP_013362684;XP_013362685 MODEL 10093943 ncrna LOC106148029 uncharacterized LOC106148029 NW_004955414 17168917 17190189 - 106148029 AGCD01015234;AGCD01015235;GBCQ01143782;XR_001233142 MODEL 8870424 protein-coding Tmem80 transmembrane protein 80 ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); FOUND IN ciliary transition zone (ortholog) NW_004955476 11391338 11397819 - 102012535 AGCD01055456;GBDJ01377826;XM_005401821;XM_005401822;XM_013502970;XM_013502971 XP_005401878;XP_005401879;XP_013358424;XP_013358425 MODEL 8900997 protein-coding Sardh sarcosine dehydrogenase ENCODES a protein that exhibits flavin adenine dinucleotide binding (ortholog); folic acid binding (ortholog); sarcosine dehydrogenase activity (ortholog); INVOLVED IN choline catabolic process (ortholog); glycine biosynthetic process (ortholog); tetrahydrofolate interconversion (ortholog); PARTICIPATES IN choline metabolic pathway; dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; ASSOCIATED WITH hepatocellular carcinoma (ortholog); Hypoxia (ortholog); sarcosinemia (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955513 2933918 2975645 - 102021472 AGCD01066892;GBBH01214329;XM_005408456;XM_013506717 XP_005408513;XP_013362171 MODEL 10073919 protein-coding LOC106150043 uncharacterized LOC106150043 NW_004955462 7356342 7442399 + 106150043 AGCD01049302;AGCD01049303;AGCD01049304;AGCD01049305;GBDF01308303;XM_013521415;XM_013521416;XM_013521417;XM_013521418;XR_001236598;XR_001236599;XR_001236600;XR_001236601 XP_013376869;XP_013376870;XP_013376871;XP_013376872 MODEL 8765062 ncrna LOC102015250 uncharacterized LOC102015250 NW_004955444 3423922 3425125 + 102015250 AGCD01038790;GBDF01085447;XR_262235 MODEL 8776857 ncrna LOC102003012 uncharacterized LOC102003012 NW_004955470 10615968 10634986 + 102003012 AGCD01052872;GBDF01190714;XR_263493 MODEL 8868713 protein-coding Pfdn1 prefoldin subunit 1 ENCODES a protein that exhibits amyloid-beta binding (ortholog); protein folding chaperone (ortholog); unfolded protein holdase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); B cell activation (ortholog); cerebellum development (ortholog); FOUND IN centrosome (ortholog); prefoldin complex (ortholog) NW_004955418 351078 414292 + 102009501 AGCD01018672;AGCD01018673;AGCD01018674;AGCD01018675;GBDF01005515;XM_005382045;XM_013512929;XR_001233501 XP_005382102;XP_013368383 MODEL 8940064 pseudo LOC102005785 pleckstrin homology domain-containing family B member 2 pseudogene NW_004955411 11025058 11025724 + 102005785 AGCD01011800 MODEL 8874476 protein-coding LOC102009926 chromosome unknown open reading frame, human C12orf57 INVOLVED IN camera-type eye morphogenesis (ortholog); cognition (ortholog); corpus callosum morphogenesis (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog) NW_004955413 4524236 4525760 + 102009926 AGCD01013621;GBDI01019226;XM_005378850 XP_005378907 MODEL 39133743 snorna SNORD115 Small nucleolar RNA SNORD115 15036842 trna Trnastop-cua transfer RNA amber suppressor (anticodon CUA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978848 10259535 protein-coding LOC106146379 uncharacterized LOC106146379 NW_004955406 43041934 43046735 + 106146379 AGCD01006723;XM_013502963 XP_013358417 MODEL 10218752 ncrna LOC106146935 uncharacterized LOC106146935 NW_004955506 4266160 4271938 - 106146935 AGCD01065331;XR_001231583;XR_001231584 MODEL 8755936 protein-coding Sh3gl3 SH3 domain containing GRB2 like 3, endophilin A3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of clathrin-dependent endocytosis (ortholog); positive regulation of neuron differentiation (ortholog); regulation of clathrin-dependent endocytosis (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); early endosome (ortholog) NW_004955416 13151288 13297878 - 102030075 AGCD01017219;AGCD01017220;AGCD01017221;GBDF01002482;XM_005381462;XM_013512668;XM_013512669;XM_013512670 XP_005381519;XP_013368122;XP_013368123;XP_013368124 MODEL 8868600 ncrna LOC102006153 uncharacterized LOC102006153 NW_004955511 3567813 3569808 - 102006153 AGCD01066468;GBDF01146056;XR_264424 MODEL 8995498 protein-coding Klhl24 kelch like family member 24 INVOLVED IN intermediate filament organization (ortholog); protein autoubiquitination (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); Generalized Epidermolysis Bullosa Simplex 6 with Scarring and Hair Loss (ortholog); generalized intermediate epidermolysis bullosa simplex 1B (ortholog); FOUND IN adherens junction (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955420 23700030 23733021 - 102003028 AGCD01021254;GBCB01020479;XM_013513537 XP_013368991 MODEL 9049458 ncrna LOC102026510 uncharacterized LOC102026510 NW_004955411 26474115 26481573 + 102026510 AGCD01012180;GBDF01262198;XR_259943 MODEL 8789233 protein-coding Ovol3 ovo like zinc finger 3 NW_004955468 2495567 2498508 - 102009591 AGCD01051823;AGCD01051824;GBDF01064045;XM_013522433 XP_013377887 MODEL 8920840 protein-coding LOC102009127 extracellular matrix protein 2 NW_004955580 238638 245468 + 102009127 AGCD01075592;AGCD01075593;GBDI01378283;XM_005414221 XP_005414278 MODEL 10120759 ncrna LOC106149226 uncharacterized LOC106149226 NW_004955440 10878821 10881310 + 106149226 AGCD01036400;GBDK01095329;XR_001235259;XR_001235260;XR_001235261 MODEL 8754261 protein-coding Piezo2 piezo type mechanosensitive ion channel component 2 ENCODES a protein that exhibits mechanosensitive monoatomic cation channel activity (ortholog); mechanosensitive monoatomic ion channel activity (ortholog); monoatomic cation channel activity (ortholog); INVOLVED IN detection of mechanical stimulus involved in sensory perception (ortholog); detection of renal blood flow (ortholog); monoatomic cation transport (ortholog); ASSOCIATED WITH cerebral palsy (ortholog); distal arthrogryposis (ortholog); distal arthrogryposis type 3 (ortholog); FOUND IN cuticular plate (ortholog); neuronal cell body membrane (ortholog); stereocilium (ortholog) NW_004955402 1534619 1873143 + 102018546 AGCD01000059;AGCD01000060;AGCD01000061;GBBH01055058;XM_005372584;XM_013514699;XM_013514720 XP_005372641;XP_013370153;XP_013370174 MODEL 8913606 ncrna LOC102019510 uncharacterized LOC102019510 NW_004955497 4056191 4062405 + 102019510 AGCD01062564;GBCQ01031347;XR_264203 MODEL 39133346 snrna U4 U4 spliceosomal RNA 10176935 ncrna LOC106150044 uncharacterized LOC106150044 NW_004955406 21066788 21090380 - 106150044 AGCD01006116;AGCD01006117;GBDI01283220;XR_001236604;XR_001236605;XR_001236606 MODEL 8733194 pseudo LOC102023731 nascent polypeptide-associated complex subunit alpha pseudogene NW_004955433 11130839 11131964 + 102023731 AGCD01031649 MODEL 8752011 ncrna LOC102026865 uncharacterized LOC102026865 NW_004955417 18837873 18841174 + 102026865 AGCD01018333;GBDF01158868;XR_260485 MODEL 8951351 pseudo LOC102008786 coiled-coil domain-containing protein 152-like NW_004955569 1719680 1720876 - 102008786 AGCD01074678 MODEL 8805541 pseudo LOC102030673 60S acidic ribosomal protein P0 pseudogene NW_004955442 2720389 2723284 + 102030673 AGCD01037475;AGCD01037476;XM_005391844 MODEL 8990563 protein-coding Ncoa1 nuclear receptor coactivator 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); nuclear estrogen receptor binding (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); cellular response to Thyroglobulin triiodothyronine (ortholog); cerebellum development (ortholog); PARTICIPATES IN aldosterone signaling pathway; androgen signaling pathway; cortisol signaling pathway; ASSOCIATED WITH breast carcinoma (ortholog); Breast Neoplasms (ortholog); endometrial carcinoma (ortholog); FOUND IN chromatin (ortholog); protein-containing complex (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955469 6676780 6892587 + 102028288 AGCD01052393;AGCD01052394;AGCD01052395;AGCD01052396;AGCD01052397;AGCD01052398;AGCD01052399;GBCE01085746;XM_005400388;XM_005400389;XM_005400390;XM_005400391;XM_013522653 XP_005400445;XP_005400446;XP_005400447;XP_005400448;XP_013378107 MODEL 8793455 protein-coding LOC102021298 putative V-set and immunoglobulin domain-containing-like protein IGHV4OR15-8 NW_004956458 3484 4133 + 102021298 AGCD01079630;XM_005415201 XP_005415258 MODEL 10222713 ncrna LOC106146654 uncharacterized LOC106146654 NW_004955407 34132286 34137853 + 106146654 AGCD01007717;GBDF01224795;XR_001231191 MODEL 10282763 ncrna LOC106146515 uncharacterized LOC106146515 NW_004955482 7573694 7581914 - 106146515 AGCD01057477;GBDF01042180;XR_001230984 MODEL 10223539 pseudo LOC106146936 RWD domain-containing protein 4 pseudogene NW_004955506 5684858 5685853 - 106146936 AGCD01065379 MODEL 15036846 trna Trnastop-uca transfer RNA opal suppressor (anticodon UCA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978847 8972145 protein-coding LOC102029982 olfactory receptor 4C45-like NW_004955422 215524 216453 + 102029982 AGCD01022401;XM_005384931 XP_005384988 MODEL 8906106 protein-coding Sppl2a signal peptide peptidase like 2A ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); protein homodimerization activity (ortholog); INVOLVED IN membrane protein ectodomain proteolysis (ortholog); membrane protein intracellular domain proteolysis (ortholog); membrane protein proteolysis (ortholog); ASSOCIATED WITH immunodeficiency 86 (ortholog); FOUND IN cytoplasmic side of endoplasmic reticulum membrane (ortholog); Golgi-associated vesicle membrane (ortholog); late endosome (ortholog) NW_004955409 3642113 3670779 + 102027720 AGCD01009258;AGCD01009259;GBCE01054717;XM_013510290 XP_013365744 MODEL 8854654 protein-coding Pmm2 phosphomannomutase 2 ENCODES a protein that exhibits phosphomannomutase activity (ortholog); INVOLVED IN GDP-D-mannose biosynthetic process from fructose-6-phosphate (ortholog); GDP-mannose biosynthetic process (ortholog); GDP-mannose biosynthetic process from mannose (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); cerebellar hypoplasia (ortholog); cerebral palsy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); neuronal cell body (ortholog) NW_004955442 9390789 9411722 - 102016753 AGCD01037679;GBBH01090482;XM_005391214;XM_005391216;XM_005391217 XP_005391271;XP_005391273;XP_005391274 MODEL 8862130 ncrna LOC102007234 uncharacterized LOC102007234 NW_004955485 7286010 7288361 - 102007234 AGCD01058650;GBBH01030082;XR_263917 MODEL 8885868 ncrna LOC102018317 uncharacterized LOC102018317 NW_004955433 20167425 20217874 - 102018317 AGCD01031882;AGCD01031883;GBDF01278148;XR_001234715;XR_261601 MODEL 8774253 protein-coding LOC102027549 serotransferrin ENCODES a protein that exhibits enzyme binding (ortholog); ferric iron binding (ortholog); ferrous iron binding (ortholog); INVOLVED IN acute-phase response (ortholog); cell surface receptor signaling pathway (ortholog); cellular response to cAMP (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; hypoxia inducible factor pathway; iron uptake pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute-Phase Reaction (ortholog); alcohol use disorder (ortholog); FOUND IN extracellular region; apical plasma membrane (ortholog); basal part of cell (ortholog) NW_004955501 4801710 4832025 - 102027549 AGCD01064145;GBDJ01061391;XM_005406809 XP_005406866 MODEL 8767974 protein-coding LOC102020497 uncharacterized LOC102020497 NW_004955568 63033 69208 + 102020497 AGCD01074502;XM_013509327 XP_013364781 MODEL 8743904 protein-coding LOC102029272 26S proteasome non-ATPase regulatory subunit 4-like NW_004955410 28696306 28697509 + 102029272 AGCD01011256;XM_013510608 XP_013366062 MODEL 8898820 protein-coding Lalba lactalbumin alpha ENCODES a protein that exhibits enzyme-substrate adaptor activity (ortholog); lactose synthase activity (ortholog); INVOLVED IN lactose biosynthetic process (ortholog); PARTICIPATES IN Glut1 deficiency syndrome pathway; lactose biosynthetic pathway; ASSOCIATED WITH colon cancer (ortholog); gastroenteritis (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955500 7487603 7489573 - 102030331 AGCD01063927;GBDF01138326;XM_005406651 XP_005406708 MODEL 9064366 protein-coding Tedc1 tubulin epsilon and delta complex 1 INVOLVED IN cytoskeleton organization (ortholog); microtubule cytoskeleton organization (ortholog); positive regulation of smoothened signaling pathway (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); cilium (ortholog) NW_004955538 3688127 3696920 + 102010092 AGCD01071175;GBDJ01135101;XM_005410878;XM_005410881 XP_005410935;XP_005410938 MODEL 8987448 protein-coding LOC102003013 olfactory receptor 2S2-like NW_004955472 324392 328281 - 102003013 AGCD01053328;XM_013522926 XP_013378380 MODEL 9015907 protein-coding LOC102025457 prolactin-releasing peptide receptor-like NW_004955475 5726671 5821664 + 102025457 AGCD01054926;AGCD01054927;AGCD01054928;XM_005401705 XP_005401762 MODEL 8905714 protein-coding Wnt8a Wnt family member 8A ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); cell morphogenesis (ortholog); endoderm development (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH atrial fibrillation (ortholog); Hereditary Neoplastic Syndromes (ortholog); hypospadias (ortholog); FOUND IN extracellular region (ortholog) NW_004955418 2332636 2338099 - 102007429 AGCD01018762;XM_005382133 XP_005382190 MODEL 8732351 protein-coding Id1 inhibitor of DNA binding 1, HLH protein ENCODES a protein that exhibits identical protein binding (ortholog); proteasome binding (ortholog); transcription factor binding (ortholog); INVOLVED IN BMP signaling pathway (ortholog); cell-abiotic substrate adhesion (ortholog); cellular response to dopamine (ortholog); PARTICIPATES IN interleukin-3 signaling pathway; ASSOCIATED WITH cholestasis (ortholog); disease of cellular proliferation (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955422 29337969 29339178 - 102019405 AGCD01023390;GBCE01002189;XM_005384905 XP_005384962 MODEL 8768094 protein-coding LOC102028200 cytochrome c oxidase assembly factor 6 homolog ENCODES a protein that exhibits copper ion binding (ortholog); protein-disulfide reductase activity (ortholog); INVOLVED IN mitochondrial respiratory chain complex IV assembly (ortholog); respiratory chain complex IV assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); mitochondrial complex IV deficiency nuclear type 13 (ortholog); mitochondrial complex IV deficiency nuclear type 2 (ortholog); FOUND IN mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955492 5316594 5324913 - 102028200 AGCD01060740;GBDF01046192;XM_005404956;XM_005404957;XM_005404958;XM_013504711 XP_005405013;XP_005405014;XP_005405015;XP_013360165 MODEL 8820537 protein-coding LOC102017970 zinc finger protein 624 NW_004955467 1957286 2017814 - 102017970 AGCD01051298;AGCD01051299;GBDI01212656;XM_005399322 XP_005399379 MODEL 10243296 ncrna LOC106146380 uncharacterized LOC106146380 NW_004955476 750110 755924 - 106146380 AGCD01055197;AGCD01055198;GBDI01267887;XR_001230796 MODEL 8866243 pseudo LOC102006157 spermatogenesis-associated protein 2 pseudogene NW_004955433 1909956 1910500 - 102006157 AGCD01031373 MODEL 8904063 protein-coding Slc25a40 solute carrier family 25 member 40 ENCODES a protein that exhibits glutathione transmembrane transporter activity (ortholog); INVOLVED IN erythrocyte development (ortholog); FOUND IN mitochondrion (ortholog) NW_004955432 5191197 5244587 - 102016941 AGCD01030767;AGCD01030768;AGCD01030769;GBCQ01073228;GBDF01251683;XM_013516045 XP_013371499 MODEL 10079568 ncrna LOC106148030 uncharacterized LOC106148030 NW_004955414 17129946 17162039 - 106148030 AGCD01015234;GBBH01109819;XR_001233143 MODEL 8856910 protein-coding LOC102012271 HAUS augmin-like complex subunit 8 NW_004956214 17 6395 + 102012271 AGCD01079252;GBDI01323698;GBDK01356093;XM_005415178;XM_005415179;XM_005415180;XM_005415181 XP_005415235;XP_005415236;XP_005415237;XP_005415238 MODEL 8737056 protein-coding LOC102004392 potassium voltage-gated channel subfamily F member 1 NW_004955487 5780814 5785142 + 102004392 AGCD01059346;GBDJ01337648;XM_005404421 XP_005404478 MODEL 8912875 pseudo LOC102015252 CD209 antigen-like protein E NW_004955563 1428249 1432409 - 102015252 AGCD01074147 MODEL 8892583 protein-coding LOC102025094 ubiquitin carboxyl-terminal hydrolase 42 NW_004955460 13645785 13690072 - 102025094 AGCD01048713;AGCD01048714;AGCD01048715;AGCD01048716;AGCD01048717;AGCD01048718;GBDI01136910;GBDJ01280509;XM_013521210 XP_013376664 MODEL 8826199 ncrna LOC102024032 uncharacterized LOC102024032 NW_004955427 19936159 19952591 + 102024032 AGCD01027389;GBDF01126122;XR_001234392;XR_261282 MODEL 8857313 protein-coding Bend2 BEN domain containing 2 INVOLVED IN chromatin organization (ortholog); double-strand break repair (ortholog); double-strand break repair via classical nonhomologous end joining (ortholog); ASSOCIATED WITH systemic juvenile rheumatoid arthritis (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955519 104726 155418 + 102029432 AGCD01067855;GBDF01303209;XM_013506980;XM_013506981 XP_013362434;XP_013362435 MODEL 9027598 protein-coding Pfdn2 prefoldin subunit 2 ENCODES a protein that exhibits amyloid-beta binding (ortholog); protein folding chaperone (ortholog); unfolded protein holdase activity (ortholog); INVOLVED IN negative regulation of amyloid fibril formation (ortholog); positive regulation of cytoskeleton organization (ortholog); protein folding (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955468 12868582 12882884 - 102030175 AGCD01052190;GBDJ01087416;XM_005400251 XP_005400308 MODEL 9039068 protein-coding Sppl2b signal peptide peptidase like 2B ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); protein homodimerization activity (ortholog); INVOLVED IN membrane protein ectodomain proteolysis (ortholog); membrane protein intracellular domain proteolysis (ortholog); membrane protein proteolysis (ortholog); FOUND IN cytoplasmic side of endoplasmic reticulum membrane (ortholog); endosome membrane (ortholog); Golgi-associated vesicle membrane (ortholog) NW_004955495 5816979 5829938 - 102013841 AGCD01062035;GBCE01134604;XM_005405903;XM_005405904;XM_013505229;XM_013505231 XP_005405960;XP_005405961;XP_013360683;XP_013360685 MODEL 8877012 pseudo LOC102005786 transcription elongation factor B polypeptide 1 pseudogene NW_004955412 19308345 19308746 + 102005786 AGCD01012950;XM_005378228 MODEL 9022618 protein-coding LOC102003354 phylloquinone omega-hydroxylase CYP4F2-like NW_004955495 7648769 7675912 - 102003354 AGCD01062155;AGCD01062156;XM_005406061 XP_005406118 MODEL 39133742 snorna SNORD115 Small nucleolar RNA SNORD115 8920217 ncrna LOC102003014 uncharacterized LOC102003014 NW_004955472 1903577 1923457 + 102003014 AGCD01053416;AGCD01053417;AGCD01053418;AGCD01053419;GBDF01013402;XR_001237086 MODEL 9037930 pseudo LOC102026511 cleavage and polyadenylation specificity factor subunit 5 pseudogene NW_004955464 6736239 6739450 - 102026511 AGCD01050038 MODEL 8862705 protein-coding LOC102026868 histone H4 NW_004955483 992411 993540 - 102026868 AGCD01057638;GBDF01294623;XM_005403331 XP_005403388 MODEL 8937409 protein-coding Tmem81 transmembrane protein 81 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN sperm-egg recognition (ortholog); FOUND IN plasma membrane (ortholog) NW_004955406 40865574 40867602 - 102004557 AGCD01006667;GBDF01254579;XM_005375341 XP_005375398 MODEL 8898445 protein-coding Sh3glb1 SH3 domain containing GRB2 like, endophilin B1 ENCODES a protein that exhibits fatty acid binding (ortholog); identical protein binding (ortholog); lysophosphatidic acid acyltransferase activity (ortholog); INVOLVED IN 'de novo' post-translational protein folding (ortholog); autophagic cell death (ortholog); cellular response to amino acid starvation (ortholog); PARTICIPATES IN mitochondria fission pathway; FOUND IN autophagosome membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955423 7393186 7414199 - 102020135 AGCD01023599;GBCB01019971;GBDF01006186;XM_013514504;XM_013514505;XM_013514506;XM_013514507 XP_013369958;XP_013369959;XP_013369960;XP_013369961 MODEL 8796143 protein-coding Klhl25 kelch like family member 25 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN negative regulation of fatty acid biosynthetic process (ortholog); positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (ortholog); positive regulation of fatty acid oxidation (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955416 18965966 18991099 + 102012644 AGCD01017413;AGCD01017414;GBBH01214843;GBDI01188510;XM_013512646 XP_013368100 MODEL 8776173 protein-coding Oxa1l OXA1L mitochondrial inner membrane insertase ENCODES a protein that exhibits membrane insertase activity (ortholog); mitochondrial ribosome binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN aerobic respiration (ortholog); mitochondrial protein quality control (ortholog); mitochondrial proton-transporting ATP synthase complex assembly (ortholog); PARTICIPATES IN mitochondrial protein import pathway; ASSOCIATED WITH mitochondrial metabolism disease (ortholog); myoepithelioma (ortholog); prostate cancer (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955409 37513925 37519250 - 102007522 AGCD01010523;AGCD01010524;GBCQ01036845;XM_005377128;XM_013510453 XP_005377185;XP_013365907 MODEL 8989021 protein-coding Sarm1 sterile alpha and TIR motif containing 1 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); identical protein binding (ortholog); NAD+ nucleosidase activity (ortholog); INVOLVED IN modification of postsynaptic structure (ortholog); NAD+ catabolic process (ortholog); nervous system process (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); respiratory syncytial virus infectious disease (ortholog); Vision Disorders (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955481 4743458 4763766 - 102004279 AGCD01056950;AGCD01056951;GBCE01145647;XM_005402754 XP_005402811 MODEL 9029030 ncrna LOC102021300 uncharacterized LOC102021300 NW_004955404 13235320 13236944 - 102021300 AGCD01003481;GBDF01280967;XR_259307 MODEL 8852191 protein-coding Ncoa2 nuclear receptor coactivator 2 ENCODES a protein that exhibits aryl hydrocarbon receptor binding (ortholog); chromatin binding (ortholog); DNA polymerase binding (ortholog); INVOLVED IN cellular response to Thyroglobulin triiodothyronine (ortholog); cerebellum development (ortholog); circadian regulation of gene expression (ortholog); PARTICIPATES IN aldosterone signaling pathway; altered androgen signaling pathway; androgen signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Breast Neoplasms (ortholog); Chronobiology Disorders (ortholog); FOUND IN cytoplasm (ortholog); dendritic spine (ortholog); nuclear body (ortholog) NW_004955444 9313748 9587109 + 102030577 AGCD01038968;AGCD01038969;AGCD01038970;AGCD01038971;GBBH01006633;GBDF01051363;XM_005392106 XP_005392163 MODEL 8798348 protein-coding LOC102009128 zinc finger protein 304 NW_004955584 189872 203610 + 102009128 AGCD01075926;GBDF01154035;XM_005414360 XP_005414417 MODEL 8749864 pseudo LOC102019513 L-lactate dehydrogenase B chain pseudogene NW_004955501 4712073 4713040 + 102019513 AGCD01064141 MODEL 39133347 snrna U4 U4 spliceosomal RNA 8875456 protein-coding Pif1 PIF1 5'-to-3' DNA helicase ENCODES a protein that exhibits 5'-3' DNA helicase activity (ortholog); 5'-3' DNA/RNA helicase activity (ortholog); ATP binding (ortholog); INVOLVED IN negative regulation of telomere maintenance via telomerase (ortholog); protein-DNA-RNA complex disassembly (ortholog); ASSOCIATED WITH Habitual Abortions (ortholog); FOUND IN chromosome, telomeric region (ortholog); mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955450 10722570 10729852 + 102009336 AGCD01042634;GBBH01043890;GBBH01043904;XM_005393887 XP_005393944 MODEL 10313168 protein-coding LOC106150045 putative HTLV-1-related endogenous sequence NW_004955462 9705194 9706002 - 106150045 AGCD01049341;GBDI01338053;XM_013521424 XP_013376878 MODEL 8706866 ncrna LOC102020499 uncharacterized LOC102020499 NW_004955574 228074 230012 + 102020499 AGCD01075093;GBCB01123138;XR_265057;XR_265058 MODEL 9020286 pseudo LOC102023735 integrator complex subunit 3 pseudogene NW_004955435 14660136 14662402 - 102023735 AGCD01033246 MODEL 8721050 pseudo LOC102009927 centrin-3 pseudogene NW_004955467 10028525 10029023 + 102009927 AGCD01051543 MODEL 10297472 ncrna LOC106148031 uncharacterized LOC106148031 NW_004955414 23326734 23329964 - 106148031 AGCD01015497;XR_001233144 MODEL 8792571 protein-coding Sp7 Sp7 transcription factor ENCODES a protein that exhibits DEAD/H-box RNA helicase binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cellular response to parathyroid hormone stimulus (ortholog); cellular response to zinc ion starvation (ortholog); cementum mineralization (ortholog); ASSOCIATED WITH aortic valve stenosis (ortholog); osteogenesis imperfecta (ortholog); osteogenesis imperfecta type 12 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955458 583981 602856 - 102019671 AGCD01047137;AGCD01047138;AGCD01047139;AGCD01047140;GBBH01190592;XM_005397173;XM_005397174;XM_005397175;XM_013520954 XP_005397230;XP_005397231;XP_005397232;XP_013376408 MODEL 9018750 ncrna LOC102011899 uncharacterized LOC102011899 NW_004955517 51555 54459 - 102011899 AGCD01067565;GBDK01097081;XR_264538 MODEL 8804901 ncrna LOC102008788 uncharacterized LOC102008788 NW_004955446 7907980 7940327 - 102008788 AGCD01040132;AGCD01040133;GBBH01101806;XR_001235659;XR_001235660;XR_001235661;XR_001235662;XR_001235663;XR_262390 MODEL 8874671 protein-coding Lama1 laminin subunit alpha 1 ENCODES a protein that exhibits extracellular matrix structural constituent (ortholog); glycosphingolipid binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN branching involved in salivary gland morphogenesis (ortholog); cell surface receptor signaling pathway (ortholog); epithelial tube branching involved in lung morphogenesis (ortholog); PARTICIPATES IN glypican signaling pathway; syndecan signaling pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); congenital merosin-deficient muscular dystrophy 1A (ortholog); fundus dystrophy (ortholog); FOUND IN basement membrane (ortholog); cell-cell junction (ortholog); extracellular matrix (ortholog) NW_004955402 4281415 4397158 + 102013130 AGCD01000118;AGCD01000119;AGCD01000120;AGCD01000121;GBCQ01099096;XM_013517659 XP_013373113 MODEL 8873453 protein-coding LOC102030682 UDP-glucuronosyltransferase 2B31-like NW_004955447 4224383 4244619 + 102030682 AGCD01040709;GBCQ01043305;XM_005392802 XP_005392859 MODEL 10119369 protein-coding LOC106146516 translation initiation factor IF-2-like NW_004955482 7040664 7041973 + 106146516 AGCD01057435;XM_013503679 XP_013359133 MODEL 8833527 protein-coding Eps8 EGFR pathway substrate 8, signaling adaptor ENCODES a protein that exhibits actin binding (ortholog); small GTPase binding (ortholog); INVOLVED IN actin crosslink formation (ortholog); actin cytoskeleton organization (ortholog); actin filament bundle assembly (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 102 (ortholog); autosomal recessive nonsyndromic deafness 106 (ortholog); FOUND IN brush border (ortholog); cell cortex (ortholog); glutamatergic synapse (ortholog) NW_004955413 12267701 12386088 - 102005356 AGCD01013986;AGCD01013987;AGCD01013988;GBDI01290198;XM_005379018;XM_005379019;XM_005379020 XP_005379075;XP_005379076;XP_005379077 MODEL 10333363 ncrna LOC106146381 uncharacterized LOC106146381 NW_004955476 794005 796873 - 106146381 AGCD01055198;XR_001230797 MODEL 10094491 ncrna LOC106146937 uncharacterized LOC106146937 NW_004955506 49095 56059 - 106146937 AGCD01065212;GBDF01157014;XR_001231585 MODEL 9065088 pseudo LOC102007239 40S ribosomal protein S7 pseudogene NW_004955421 17106374 17106961 + 102007239 AGCD01022014 MODEL 8922621 protein-coding LOC102018319 zinc finger protein 709-like NW_004955524 62567 82782 + 102018319 AGCD01068663;GBCE01006763;XM_005409477;XM_013507335;XM_013507336;XM_013507337 XP_005409534;XP_013362789;XP_013362790;XP_013362791 MODEL 8936534 protein-coding Pmp22 peripheral myelin protein 22 ENCODES a protein that exhibits cytoskeletal motor activity (ortholog); protein serine/threonine kinase inhibitor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); adult locomotory behavior (ortholog); adult walking behavior (ortholog); ASSOCIATED WITH Abnormal Reflexes (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 1 (ortholog); FOUND IN bicellular tight junction (ortholog); cell surface (ortholog); compact myelin (ortholog) NW_004955467 2422181 2456925 + 102021226 AGCD01051310;GBBH01065423;XM_005399333;XM_005399334 XP_005399390;XP_005399391 MODEL 8999123 ncrna LOC102025097 uncharacterized LOC102025097 NW_004955411 5016033 5019994 + 102025097 AGCD01011593;GBDJ01318909;XR_259918 MODEL 9066100 protein-coding LOC102027555 olfactory receptor 13A1-like NW_004955507 6460735 6461661 - 102027555 AGCD01065717;XM_005407710 XP_005407767 MODEL 9032120 pseudo LOC102029273 ubiquitin carboxyl-terminal hydrolase 1 pseudogene NW_004955462 6209098 6216787 - 102029273 AGCD01049276;AGCD01049277 MODEL 9050752 pseudo LOC102025458 metaxin-2 pseudogene NW_004955416 1728461 1729244 - 102025458 AGCD01016840 MODEL 8976642 ncrna LOC102028202 uncharacterized LOC102028202 NW_004955493 7946459 7950430 - 102028202 AGCD01061243;GBDF01251904;XR_264096 MODEL 10341839 ncrna LOC106149227 uncharacterized LOC106149227 NW_004955440 10523880 10538941 + 106149227 AGCD01036392;AGCD01036393;GBCQ01004775;XR_001235262 MODEL 8952183 pseudo LOC102011905 dnaJ homolog subfamily A member 1 pseudogene NW_004955526 2793294 2822895 + 102011905 AGCD01069321 MODEL 8867853 pseudo LOC102006158 nucleobindin-2 pseudogene NW_004955434 753047 754103 - 102006158 AGCD01032038 MODEL 8896803 pseudo LOC102026515 protein boule-like NW_004955467 7498385 7500559 + 102026515 AGCD01051436 MODEL 8803349 pseudo LOC102029984 BH3-interacting domain death agonist pseudogene NW_004955424 2014996 2015759 + 102029984 AGCD01024258;XM_005385428 MODEL 8918719 protein-coding LOC102003015 olfactory receptor 51G2-like NW_004955414 20898763 20899722 - 102003015 AGCD01015395;XM_005380485 XP_005380542 MODEL 8717861 ncrna LOC102012280 uncharacterized LOC102012280 NW_004955455 541374 542760 - 102012280 AGCD01045560;GBDF01021764;XR_262806 MODEL 8949108 protein-coding Oxct1 3-oxoacid CoA-transferase 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); succinyl-CoA:3-oxo-acid CoA-transferase activity (ortholog); INVOLVED IN adipose tissue development (ortholog); heart development (ortholog); ketone body catabolic process (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH Burns (ortholog); carbohydrate metabolic disorder (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN mitochondrion (ortholog) NW_004955426 25885518 25998187 - 102027088 AGCD01026730;AGCD01026731;AGCD01026732;AGCD01026733;AGCD01026734;GBBH01091031;GBCB01002162;XM_013514992 XP_013370446 MODEL 10344674 ncrna LOC106146655 uncharacterized LOC106146655 NW_004955489 1506315 1508058 + 106146655 AGCD01059841;GBDF01123313;XR_001231189 MODEL 8966488 ncrna LOC102007245 uncharacterized LOC102007245 NW_004955495 6585034 6603591 - 102007245 AGCD01062085;GBDF01168574;XR_001231373;XR_264166 MODEL 9042124 ncrna LOC102023736 uncharacterized LOC102023736 NW_004955527 1637263 1641802 + 102023736 AGCD01069411;GBDF01095954;XR_001231974 MODEL 15036845 trna Trnastop-uua transfer RNA ochre suppressor(anticodon UUA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978849 8867892 protein-coding Bend3 BEN domain containing 3 ENCODES a protein that exhibits rDNA binding (ortholog); INVOLVED IN DNA methylation-dependent constitutive heterochromatin formation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of ATP metabolic process (ortholog); FOUND IN heterochromatin (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955411 32346573 32384796 - 102008512 AGCD01012309;GBDF01161780;XM_005377836;XM_013510795;XM_013510796;XM_013510797 XP_005377893;XP_013366249;XP_013366250;XP_013366251 MODEL 8888258 pseudo LOC102017979 NAD-dependent malic enzyme, mitochondrial pseudogene NW_004955475 5686616 5688181 + 102017979 AGCD01054925 MODEL 8978166 pseudo LOC102027557 olfactory receptor 5W2-like NW_004955511 769293 770227 - 102027557 AGCD01066342 MODEL 8973198 protein-coding Sppl2c signal peptide peptidase like 2C ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); aspartic-type endopeptidase activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN acrosome assembly (ortholog); fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); intracellular calcium ion homeostasis (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytoplasmic side of endoplasmic reticulum membrane (ortholog); endoplasmic reticulum membrane (ortholog); lumenal side of endoplasmic reticulum membrane (ortholog) NW_004955478 10368379 10370624 - 102015632 AGCD01056132;GBDF01008849;XM_005402268 XP_005402325 MODEL 10208986 ncrna LOC106148032 uncharacterized LOC106148032 NW_004955403 1563684 1565150 + 106148032 AGCD01001723;GBDF01305652;XR_001233146;XR_001233147 MODEL 39131966 snorna SNORD116 Small nucleolar RNA SNORD116 8913814 protein-coding LOC102003358 zinc finger protein 709-like NW_004955499 342903 348346 + 102003358 AGCD01063222;GBDI01384946;XM_013505570 XP_013361024 MODEL 8977005 protein-coding Slc25a41 solute carrier family 25 member 41 ENCODES a protein that exhibits ADP transmembrane transporter activity (ortholog); ATP transmembrane transporter activity (ortholog); INVOLVED IN ADP transport (ortholog); ATP transport (ortholog); mitochondrial ADP transmembrane transport (ortholog); FOUND IN mitochondrion (ortholog) NW_004955495 3175892 3182637 + 102013733 AGCD01061833;GBDF01010067;XM_005405722 XP_005405779 MODEL 39131504 protein-coding TMEM81 transmembrane protein 81 39131488 protein-coding KLHL25 kelch like family member 25 10171670 protein-coding LOC106146382 INO80 complex subunit B-like NW_004955476 6608079 6610286 - 106146382 AGCD01055336;GBBH01119289;GBCQ01035756;XM_013502965 XP_013358419 MODEL 8740475 protein-coding LOC102015253 vomeronasal type-1 receptor 2-like NW_004955569 918627 919520 + 102015253 AGCD01074626;XM_005413514 XP_005413571 MODEL 8979472 ncrna LOC102021311 uncharacterized LOC102021311 NW_004955407 37939818 37945531 - 102021311 AGCD01007789;XR_259622 MODEL 8743251 pseudo LOC102024033 60S ribosome subunit biogenesis protein NIP7 homolog pseudogene NW_004955428 4681870 4684650 - 102024033 AGCD01027700 MODEL 8885025 protein-coding Sarnp SAP domain containing ribonucleoprotein ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN mRNA export from nucleus (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN NXF1-NXT1 export pathway; FOUND IN nuclear speck (ortholog); nucleus (ortholog); transcription export complex (ortholog) NW_004955458 3396443 3451193 - 102021210 AGCD01047301;AGCD01047302;GBDJ01421628;XM_005397259;XR_262968 XP_005397316 MODEL 8714037 protein-coding Ncoa3 nuclear receptor coactivator 3 ENCODES a protein that exhibits chromatin binding (ortholog); disordered domain specific binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cell dedifferentiation (ortholog); cellular response to estradiol stimulus (ortholog); cerebellum development (ortholog); PARTICIPATES IN androgen signaling pathway; cortisol signaling pathway; estrogen signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Bone Neoplasms (ortholog); breast cancer (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955445 10020916 10085318 - 102010000 AGCD01039639;AGCD01039640;AGCD01039641;AGCD01039642;AGCD01039643;GBDF01157839;GBDI01127910;XM_005392342 XP_005392399 MODEL 8875810 ncrna LOC102019514 uncharacterized LOC102019514 NW_004955427 11862404 11900128 + 102019514 AGCD01027195;AGCD01027196;AGCD01027197;GBCQ01186668;XR_001234347;XR_261253 MODEL 8795966 protein-coding LOC102029986 olfactory receptor 8S1-like NW_004955500 7435876 7437241 - 102029986 AGCD01063923;XM_005406650 XP_005406707 MODEL 39133348 snrna U4 U4 spliceosomal RNA 8977180 protein-coding Tedc2 tubulin epsilon and delta complex 2 INVOLVED IN cytoskeleton organization (ortholog); microtubule cytoskeleton organization (ortholog); positive regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); cilium (ortholog) NW_004955442 14856517 14862391 - 102023203 AGCD01037845;GBDJ01006881;XM_005391427;XM_013517938;XM_013517939;XM_013517940 XP_005391484;XP_013373392;XP_013373393;XP_013373394 MODEL 8872093 protein-coding Id2 inhibitor of DNA binding 2 ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); transcription regulator inhibitor activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN adipose tissue development (ortholog); adult locomotory behavior (ortholog); bundle of His development (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Arsenic Poisoning (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955487 878326 880783 - 102009189 AGCD01059234;GBDJ01312094;XM_005404347;XM_005404348 XP_005404404;XP_005404405 MODEL 8940557 protein-coding LOC102026518 olfactory receptor 51V1-like NW_004955414 21032720 21033664 - 102026518 AGCD01015402;XM_005380072 XP_005380129 MODEL 8767103 protein-coding Piga phosphatidylinositol glycan anchor biosynthesis class A INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH autosomal recessive congenital ichthyosis 4B (ortholog); generalized epilepsy (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog); rough endoplasmic reticulum membrane (ortholog) NW_004955519 2852605 2865848 + 102017375 AGCD01067942;GBCE01011293;XM_005409170;XM_013507014;XR_001231864 XP_005409227;XP_013362468 MODEL 9023152 ncrna LOC102025099 uncharacterized LOC102025099 NW_004955411 35546106 35572131 - 102025099 AGCD01012440;XR_259954 MODEL 8944078 protein-coding Pfdn4 prefoldin subunit 4 ENCODES a protein that exhibits amyloid-beta binding (ortholog); unfolded protein holdase activity (ortholog); INVOLVED IN negative regulation of amyloid fibril formation (ortholog); protein folding (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955445 4832220 4844007 - 102014300 AGCD01039432;AGCD01039433;GBDJ01311379;XM_005392283;XM_013518390 XP_005392340;XP_013373844 MODEL 8965806 protein-coding Sp8 Sp8 transcription factor ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN dorsal/ventral pattern formation (ortholog); embryonic limb morphogenesis (ortholog); proximal/distal pattern formation (ortholog) NW_004955410 23401888 23404654 - 102004254 AGCD01011100;AGCD01011101;GBDF01128758;XM_013510495 XP_013365949 MODEL 8701422 ncrna LOC102026870 uncharacterized LOC102026870 NW_004955419 20421628 20427552 + 102026870 AGCD01020242;GBDF01013846;XR_260647 MODEL 8810314 protein-coding LOC102029274 sodium-dependent glucose transporter 1C-like NW_004955411 36047819 36055824 + 102029274 AGCD01012464;GBDF01278495;XM_013510836;XM_013510837;XM_013510838;XM_013510839;XM_013510841 XP_013366290;XP_013366291;XP_013366292;XP_013366293;XP_013366295 MODEL 8911050 pseudo LOC102030683 eukaryotic translation initiation factor 1A, X-chromosomal-like NW_004955447 5145247 5154052 + 102030683 AGCD01040743;AGCD01040744 MODEL 9012376 pseudo LOC102004394 60S ribosomal protein L36 pseudogene NW_004955491 6461282 6485923 + 102004394 AGCD01060532;AGCD01060533 MODEL 8839973 protein-coding Lama2 laminin subunit alpha 2 INVOLVED IN axon guidance (ortholog); positive regulation of synaptic transmission, cholinergic (ortholog); Schwann cell differentiation (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 23 (ortholog); Charcot-Marie-Tooth disease (ortholog); congenital merosin-deficient muscular dystrophy 1A (ortholog); FOUND IN basement membrane (ortholog); dendritic spine (ortholog); neuromuscular junction (ortholog) NW_004955436 9829777 10400101 + 102013645 AGCD01033770;AGCD01033771;AGCD01033772;AGCD01033773;AGCD01033774;AGCD01033775;AGCD01033776;AGCD01033777;AGCD01033778;AGCD01033779;AGCD01033780;AGCD01033781;GBCE01085149;XM_005389182;XM_005389183;XM_005389185;XM_005389186 XP_005389239;XP_005389240;XP_005389242;XP_005389243 MODEL 10188278 ncrna LOC106146938 uncharacterized LOC106146938 NW_004955506 6751070 6753790 - 106146938 AGCD01065452;AGCD01065453;GBDJ01349855;XR_001231586 MODEL 10337105 ncrna LOC106149228 uncharacterized LOC106149228 NW_004955440 10700753 10750432 + 106149228 AGCD01036396;AGCD01036397;GBCQ01131134;XR_001235263 MODEL 8927919 protein-coding Eps8l1 EPS8 signaling adaptor L1 ENCODES a protein that exhibits actin binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); T cell receptor binding (ortholog); INVOLVED IN positive regulation of ruffle assembly (ortholog); regulation of Rho protein signal transduction (ortholog); Rho protein signal transduction (ortholog); FOUND IN cytosol (ortholog); protein-containing complex (ortholog); ruffle membrane (ortholog) NW_004955567 1074714 1084259 - 102006837 AGCD01074458;AGCD01074459;GBCE01000821;XM_013509255;XM_013509256;XM_013509257;XM_013509258 XP_013364709;XP_013364710;XP_013364711;XP_013364712 MODEL 8743367 protein-coding LOC102003016 uncharacterized LOC102003016 NW_004955415 11944706 11993056 - 102003016 AGCD01016181;AGCD01016182;GBDF01221008;XM_013512125 XP_013367579 MODEL 10332784 ncrna LOC106150046 uncharacterized LOC106150046 NW_004955462 9544598 9550462 + 106150046 AGCD01049339;GBDI01311494;XR_001236607 MODEL 8926406 protein-coding LOC102020501 olfactory receptor 12-like NW_004955581 974973 975902 + 102020501 AGCD01075705;XM_005414256 XP_005414313 MODEL 8843691 protein-coding LOC102005787 olfactory receptor 147-like NW_004955412 25191307 25192245 + 102005787 AGCD01013140;XM_005378415 XP_005378472 MODEL 8716148 ncrna LOC102009929 uncharacterized LOC102009929 NW_004955468 11697494 11712294 + 102009929 AGCD01052137;GBBH01041129;XR_001236933;XR_263414;XR_263415 MODEL 8957178 pseudo LOC102008791 alpha-enolase pseudogene NW_004955447 16493351 16494703 + 102008791 AGCD01041088 MODEL 8957713 protein-coding Oxct2 3-oxoacid CoA-transferase 2 FOUND IN mitochondrion (ortholog); motile cilium (ortholog) NW_004955452 17267971 17270072 - 102029473 AGCD01044547;GBDF01009049;GBDJ01187881;XM_005395266 XP_005395323 MODEL 8868356 protein-coding LOC102025459 interferon-induced transmembrane protein 2 NW_004955476 11685438 11686491 + 102025459 AGCD01055472;GBBH01025088;XM_005401871 XP_005401928 MODEL 10111414 ncrna LOC106146656 uncharacterized LOC106146656 NW_004955489 2393255 2398551 + 106146656 AGCD01059869;AGCD01059870;GBDK01417189;XR_001231190 MODEL 8972079 pseudo LOC102026520 structural maintenance of chromosomes protein 4-like NW_004955473 7138862 7145087 + 102026520 AGCD01054015 MODEL 10229334 ncrna LOC106146517 uncharacterized LOC106146517 NW_004955482 6830828 6832171 - 106146517 AGCD01057420;GBCB01051889;XR_001230986 MODEL 8878534 ncrna LOC102007252 uncharacterized LOC102007252 NW_004955427 4321562 4338950 + 102007252 AGCD01026962;GBDF01219849;XR_001234341;XR_001234342;XR_261230 MODEL 8905107 pseudo LOC102011909 ATP synthase F(0) complex subunit C2, mitochondrial pseudogene NW_004955538 2556303 2557233 + 102011909 AGCD01071128 MODEL 8953536 protein-coding LOC102009133 vomeronasal type-1 receptor 4-like NW_004955603 230078 230680 + 102009133 AGCD01076823;XM_005414842 XP_005414899 MODEL 8948625 protein-coding Bend4 BEN domain containing 4 ASSOCIATED WITH ENCEPHALOPATHY, ACUTE, INFECTION-INDUCED, 3 (ortholog); lung non-small cell carcinoma (ortholog) NW_004955443 5593351 5613569 + 102009230 AGCD01038242;GBBH01170689;XM_005391922 XP_005391979 MODEL 39131967 snorna SNORD116 Small nucleolar RNA SNORD116 8985883 protein-coding Sh3glb2 SH3 domain containing GRB2 like, endophilin B2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN postsynaptic neurotransmitter receptor internalization (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955570 1370106 1379405 - 102025738 AGCD01074812;GBCE01028722;GBDJ01007498;XM_013509416;XM_013509417;XM_013509418;XM_013509419;XM_013509420;XM_013509421;XM_013509422;XM_013509423 XP_013364870;XP_013364871;XP_013364872;XP_013364873;XP_013364874;XP_013364875;XP_013364876;XP_013364877 MODEL 10113404 ncrna LOC106148033 uncharacterized LOC106148033 NW_004955414 3579277 3699540 - 106148033 AGCD01014829;AGCD01014830;AGCD01014831;AGCD01014832;AGCD01014833;AGCD01014834;AGCD01014835;AGCD01014836;AGCD01014837;AGCD01014838;GBDF01136760;XR_001233145 MODEL 8946988 ncrna LOC102012281 uncharacterized LOC102012281 NW_004955456 10060816 10063097 + 102012281 AGCD01046517;GBDF01293625;XR_262891 MODEL 8934781 ncrna LOC102015261 uncharacterized LOC102015261 NW_004955592 702280 703610 - 102015261 AGCD01076321;GBCC01027024;XR_001232540 MODEL 10207226 pseudo LOC106146939 calcyclin-binding protein pseudogene NW_004955506 4521875 4522518 - 106146939 AGCD01065338 MODEL 9013956 protein-coding Pmpca peptidase, mitochondrial processing subunit alpha ENCODES a protein that exhibits endopeptidase activity (ortholog); metallopeptidase activity (ortholog); INVOLVED IN protein processing (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 2 (ortholog); cerebellar ataxia (ortholog); genetic disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955513 4315159 4322609 - 102006379 AGCD01066925;GBDF01081940;XM_005408489;XM_013506655 XP_005408546;XP_013362109 MODEL 8865952 protein-coding LOC102019525 melanoma-associated antigen B3-like NW_004955531 780560 788753 + 102019525 AGCD01070011;AGCD01070012;XM_005410136 XP_005410193 MODEL 8906525 protein-coding Teddm1 transmembrane epididymal protein 1 NW_004955406 21282941 21285402 - 102016975 AGCD01006122;XM_005375003 XP_005375060 MODEL 39133524 snrna U4 U4 spliceosomal RNA 8893381 ncrna LOC102028204 uncharacterized LOC102028204 NW_004955422 25349244 25358228 + 102028204 AGCD01023248;GBDF01187551;XR_001233987;XR_001233988 MODEL 8806175 protein-coding LOC102025102 uncharacterized LOC102025102 NW_004955466 10805473 10806476 + 102025102 AGCD01051077;GBDF01213392;XM_005399201 XP_005399258 MODEL 8908461 pseudo LOC102017980 60S ribosomal protein L37 pseudogene NW_004955478 84577 84852 + 102017980 AGCD01055731 MODEL 8746088 ncrna LOC102006159 uncharacterized LOC102006159 NW_004955526 3480118 3482226 - 102006159 AGCD01069336;GBDF01015650;XR_264662 MODEL 9006993 protein-coding Sppl3 signal peptide peptidase like 3 ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); protein homodimerization activity (ortholog); INVOLVED IN membrane protein ectodomain proteolysis (ortholog); membrane protein proteolysis (ortholog); positive regulation of calcineurin-NFAT signaling cascade (ortholog); FOUND IN cytoplasmic side of endoplasmic reticulum membrane (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog) NW_004955455 10849627 10905515 + 102006096 AGCD01045965;GBCE01136763;XM_005396491 XP_005396548 MODEL 8741504 protein-coding Wnt8b Wnt family member 8B ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); negative regulation of gene expression (ortholog); positive regulation of gene expression (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; ASSOCIATED WITH Hirschsprung's disease (ortholog) NW_004955485 9658432 9679371 - 102010268 AGCD01058777;AGCD01058778;AGCD01058779;GBDI01289442;XM_005403912 XP_005403969 MODEL 8881462 protein-coding LOC102018320 zinc finger protein OZF-like NW_004955524 2146250 2150075 - 102018320 AGCD01068800;GBCE01006151;XM_005409651 XP_005409708 MODEL 8870257 protein-coding Slc25a42 solute carrier family 25 member 42 ENCODES a protein that exhibits ADP phosphatase activity (ortholog); ADP transmembrane transporter activity (ortholog); AMP transmembrane transporter activity (ortholog); INVOLVED IN ADP transport (ortholog); AMP transport (ortholog); ATP transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); mitochondrial myopathy (ortholog); Recurrent Metabolic Crises with Variable Encephalomyopathic Features and Neurologic Regression (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955524 2674508 2683304 - 102007050 AGCD01068828;GBCB01022455;XM_005409612;XM_005409613;XM_013507218;XM_013507219 XP_005409669;XP_005409670;XP_013362672;XP_013362673 MODEL 9028100 pseudo LOC102004399 suppressor of cytokine signaling 5-like NW_004955495 3002495 3005343 + 102004399 AGCD01061814;AGCD01061815 MODEL 9019856 protein-coding Tmem82 transmembrane protein 82 NW_004955527 2428818 2432843 - 102009538 AGCD01069436;GBDI01182004;XM_005409860;XM_013507418 XP_005409917;XP_013362872 MODEL 10313457 protein-coding LOC106146222 endothelin-converting enzyme 2-like NW_004955420 23227567 23236028 - 106146222 AGCD01021237;GBDF01112618;XM_005383344 XP_005383401 MODEL 8916616 pseudo LOC102009135 cyclin-G1 pseudogene NW_004955647 79945 80944 + 102009135 AGCD01077761 MODEL 10179758 ncrna LOC106146383 uncharacterized LOC106146383 NW_004955476 1198940 1199263 + 106146383 AGCD01055201;GBCB01111388;XR_001230799 MODEL 8909214 protein-coding LOC102024035 acyl-CoA desaturase 1-like NW_004955507 6193698 6208835 + 102024035 AGCD01065697;XM_005407697;XM_005407698 XP_005407754;XP_005407755 MODEL 8726988 protein-coding Ncoa4 nuclear receptor coactivator 4 INVOLVED IN intracellular iron ion homeostasis (ortholog); protein targeting to lysosome (ortholog); response to hormone (ortholog); PARTICIPATES IN iron homeostasis pathway; ASSOCIATED WITH invasive ductal carcinoma (ortholog); ovarian carcinoma (ortholog); polycystic ovary syndrome (ortholog); FOUND IN autolysosome (ortholog); chromosome (ortholog); nucleus (ortholog) NW_004955556 392412 413643 + 102024513 AGCD01073175;GBCQ01033190;XM_005412555;XM_005412556;XM_013508789 XP_005412612;XP_005412613;XP_013364243 MODEL 8749961 protein-coding Sars1 seryl-tRNA synthetase 1 ENCODES a protein that exhibits enzyme binding (ortholog); molecular adaptor activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cytoplasmic translation (ortholog); negative regulation of angiogenesis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); coronary artery disease (ortholog); HUPRA Syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955435 12642485 12659833 + 102025160 AGCD01033160;AGCD01033161;GBDF01045746;XM_005388851;XM_013516442 XP_005388908;XP_013371896 MODEL 10086782 ncrna LOC106148034 uncharacterized LOC106148034 NW_004955414 5099672 5133592 + 106148034 AGCD01014888;GBCB01018823;XR_001233148 MODEL 8865858 protein-coding Id3 inhibitor of DNA binding 3, HLH protein ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); leptomycin B binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN cellular response to leptomycin B (ortholog); central nervous system development (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); Burkitt lymphoma (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955452 3537352 3538921 - 102016972 AGCD01043929;GBDK01016702;XM_005394768 XP_005394825 MODEL 9058977 pseudo LOC102027558 40S ribosomal protein S4, X isoform-like NW_004955429 23600002 23601549 - 102027558 AGCD01029073 MODEL 8892407 protein-coding Pigb phosphatidylinositol glycan anchor biosynthesis class B ENCODES a protein that exhibits dol-P-Man:Man(2)GlcN-acyl-PI alpha-1,2-mannosyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 80 (ortholog); genetic disease (ortholog); hyperphosphatasia with impaired intellectual development syndrome 1 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955409 562575 577082 - 102020890 AGCD01009155;GBCE01000716;GBDI01179911;XM_013510265 XP_013365719 MODEL 8943844 ncrna LOC102026873 uncharacterized LOC102026873 NW_004955421 15087258 15132481 - 102026873 AGCD01021965;AGCD01021966;GBDF01076557;XR_260794;XR_260795 MODEL 8907992 ncrna LOC102025462 uncharacterized LOC102025462 NW_004955417 16966754 16974988 + 102025462 AGCD01018279;GBCB01118822;XR_260484 MODEL 8809063 protein-coding Sp9 Sp9 transcription factor ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN embryonic limb morphogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); generalized epilepsy (ortholog); intellectual disability (ortholog) NW_004955449 1003462 1006023 - 102007715 AGCD01041780;AGCD01041781;XM_005393191 XP_005393248 MODEL 8971967 protein-coding Oxgr1 oxoglutarate receptor 1 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); positive regulation of vascular associated smooth muscle contraction (ortholog); ASSOCIATED WITH Calcium Oxalate Nephrolithiasis 2 with Nephrocalcinosis (ortholog); Otitis Media with Effusion (ortholog); FOUND IN plasma membrane (ortholog) NW_004955404 13337607 13344789 + 102021511 AGCD01003482;GBCQ01086326;XM_005374095;XM_013517055 XP_005374152;XP_013372509 MODEL 8990233 protein-coding LOC102019527 IQ domain-containing protein F5-like NW_004955532 3445260 3445766 + 102019527 AGCD01070280;GBDF01010020;XM_005410323 XP_005410380 MODEL 8930452 pseudo LOC102003359 transmembrane protein 254 pseudogene NW_004955424 24750779 24751166 - 102003359 AGCD01025032 MODEL 8832718 ncrna LOC102028207 uncharacterized LOC102028207 NW_004955495 2473673 2496482 - 102028207 AGCD01061777;AGCD01061778;AGCD01061779;AGCD01061780;AGCD01061781;GBDF01089112;XR_264135 MODEL 8735422 protein-coding Klhl26 kelch like family member 26 NW_004955524 2947402 2964192 - 102028331 AGCD01068845;GBCB01057741;XM_005409590;XM_013507308 XP_005409647;XP_013362762 MODEL 10288267 protein-coding LOC106149229 uncharacterized LOC106149229 NW_004955440 16825196 16836806 - 106149229 AGCD01036533;GBDJ01220631;XM_013517493 XP_013372947 MODEL 8821532 protein-coding Lama3 laminin subunit alpha 3 INVOLVED IN cell-cell adhesion (ortholog); endodermal cell differentiation (ortholog); hemidesmosome assembly (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH chronic ulcer of skin (ortholog); genetic disease (ortholog); interstitial lung disease 2 (ortholog); FOUND IN adherens junction (ortholog); basement membrane (ortholog); extracellular matrix (ortholog) NW_004955402 11980980 12362143 + 102020507 AGCD01000335;AGCD01000336;AGCD01000337;AGCD01000338;AGCD01000339;AGCD01000340;AGCD01000341;AGCD01000342;AGCD01000343;AGCD01000344;AGCD01000345;AGCD01000346;AGCD01000347;AGCD01000348;AGCD01000349;AGCD01000350;AGCD01000351;AGCD01000352;AGCD01000353;AGCD01000354;AGCD01000355;AGCD01000356;AGCD01000357;AGCD01000358;AGCD01000359;AGCD01000360;AGCD01000361;AGCD01000362;AGCD01000363;AGCD01000364;AGCD01000365;AGCD01000366;AGCD01000367;AGCD01000368;AGCD01000369;AGCD01000370;AGCD01000371;AGCD01000372;AGCD01000373;AGCD01000374;AGCD01000375;AGCD01000376;AGCD01000377;AGCD01000378;AGCD01000379;AGCD01000380;AGCD01000381;AGCD01000382;AGCD01000383;AGCD01000384;AGCD01000385;AGCD01000386;AGCD01000387;AGCD01000388;AGCD01000389;GBDJ01229317;GBDJ01229318;XM_013504299 XP_013359753 MODEL 10106038 ncrna LOC106150047 uncharacterized LOC106150047 NW_004955462 4091267 4100236 - 106150047 AGCD01049216;GBDK01272450;XR_001236608 MODEL 8926458 protein-coding LOC102023737 trace amine-associated receptor 4-like NW_004955436 13171911 13172951 - 102023737 AGCD01033855;XM_005389215 XP_005389272 MODEL 9055693 protein-coding LOC102012282 uroplakin-3b-like protein NW_004955456 15093798 15098628 + 102012282 AGCD01046662;GBDJ01177525;XM_005396824;XM_013520654 XP_005396881;XP_013376108 MODEL 8950651 pseudo LOC102008792 F-box/LRR-repeat protein 20 pseudogene NW_004955447 14849540 14851022 - 102008792 AGCD01041022 MODEL 8891365 ncrna LOC102009931 uncharacterized LOC102009931 NW_004955469 1231307 1236093 - 102009931 AGCD01052250;XR_263423 MODEL 8733503 ncrna LOC102005792 uncharacterized LOC102005792 NW_004955414 5124870 5149552 - 102005792 AGCD01014888;XR_260153 MODEL 8717000 protein-coding Tmem86a transmembrane protein 86A ENCODES a protein that exhibits alkenylglycerophosphocholine hydrolase activity (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955414 33357432 33361478 + 102024787 AGCD01015805;GBCE01065788;XM_005380425 XP_005380482 MODEL 10338211 ncrna LOC106146940 uncharacterized LOC106146940 NW_004955506 2779591 2780076 - 106146940 AGCD01065301;GBDK01198345;XR_001231591 MODEL 8870115 protein-coding LOC102029276 olfactory receptor 145-like NW_004955412 25282409 25283511 + 102029276 AGCD01013143;XM_005378651;XM_013510985 XP_005378708;XP_013366439 MODEL 10194777 ncrna LOC106146657 uncharacterized LOC106146657 NW_004955407 34519538 34522828 - 106146657 AGCD01007722;GBDK01352288;XR_001231195;XR_001231197 MODEL 8964151 pseudo LOC102011910 WD repeat-containing protein 25-like NW_004955437 2585766 2597361 - 102011910 AGCD01034277;AGCD01034278 MODEL 39131968 snorna SNORD116 Small nucleolar RNA SNORD116 9040004 ncrna LOC102021315 uncharacterized LOC102021315 NW_004955408 24229582 24231940 - 102021315 AGCD01008604;GBDF01157222;XR_001232408;XR_001232409;XR_259709 MODEL 8933391 ncrna LOC102025104 uncharacterized LOC102025104 NW_004955467 4852986 4885256 + 102025104 AGCD01051375;XR_001236831;XR_263334 MODEL 8938008 ncrna LOC102029989 uncharacterized LOC102029989 NW_004955429 23444217 23448375 + 102029989 AGCD01029067;GBDJ01151665;XR_261395 MODEL 9027619 protein-coding LOC102003362 60S ribosomal protein L29-like NW_004955505 6929524 6988367 + 102003362 AGCD01065190;AGCD01065191;AGCD01065192;AGCD01065193;XM_005407177 XP_005407234 MODEL 8821764 ncrna LOC102004400 uncharacterized LOC102004400 NW_004955497 160123 162418 + 102004400 AGCD01062402;GBDF01039971;XR_264186 MODEL 8714450 trna Trnat-agu transfer RNA threonine (anticodon AGU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978810 AGCD01035275;AGCD01037196;AGCD01050588;AGCD01050597;AGCD01051466;AGCD01051472;AGCD01051842;AGCD01057606;AGCD01071886 MODEL 9028170 protein-coding Eps8l2 EPS8 signaling adaptor L2 ENCODES a protein that exhibits actin binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN positive regulation of ruffle assembly (ortholog); regulation of Rho protein signal transduction (ortholog); Rho protein signal transduction (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 106 (ortholog); Meniere's disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); protein-containing complex (ortholog) NW_004955476 11371928 11390588 - 102012192 AGCD01055454;AGCD01055455;AGCD01055456;GBBH01063738;GBDI01006668;XM_005401820 XP_005401877 MODEL 8954500 ncrna LOC102015270 uncharacterized LOC102015270 NW_004955451 13413208 13414369 + 102015270 AGCD01043475;GBDF01266060;XR_001235973 MODEL 9014771 protein-coding Pmpcb peptidase, mitochondrial processing subunit beta ENCODES a protein that exhibits endopeptidase activity (ortholog); metalloendopeptidase activity (ortholog); metallopeptidase activity (ortholog); INVOLVED IN protein localization to mitochondrion (ortholog); protein processing (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH genetic disease (ortholog); multiple mitochondrial dysfunctions syndrome 6 (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial processing peptidase complex (ortholog); mitochondrion (ortholog) NW_004955410 8304088 8317639 + 102016455 AGCD01010744;GBDK01229185;XM_005377228;XM_005377229 XP_005377285;XP_005377286 MODEL 9000470 protein-coding LOC102024037 olfactory receptor 140-like NW_004955511 175875 177677 + 102024037 AGCD01066321;XM_005407938 XP_005407995 MODEL 39133525 snrna U4 U4 spliceosomal RNA 8743824 protein-coding LOC102026521 PRAME family member 20-like NW_004955474 10659 40282 + 102026521 AGCD01054192;AGCD01054193;AGCD01054194;AGCD01054195;AGCD01054196;AGCD01054197;GBDF01304030;XM_013523092 XP_013378546 MODEL 10061121 ncrna LOC106146518 uncharacterized LOC106146518 NW_004955482 4788899 4793780 - 106146518 AGCD01057310;GBDF01116063;XR_001230989 MODEL 8763079 protein-coding Tef TEF transcription factor, PAR bZIP family member ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); double-stranded DNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog) NW_004955413 26956285 26978734 + 102017559 AGCD01014489;GBBH01002122;XM_005379346;XM_005379347 XP_005379403;XP_005379404 MODEL 8939432 ncrna LOC102007257 uncharacterized LOC102007257 NW_004955510 4095118 4095706 - 102007257 AGCD01066254;GBDF01078004;XR_264407 MODEL 9035080 protein-coding LOC102027559 olfactory receptor 4P4 NW_004955511 389249 391916 + 102027559 AGCD01066331;XM_005408189 XP_005408246 MODEL 10085659 protein-coding Bend5 BEN domain containing 5 INVOLVED IN negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955464 9952128 9997938 + 106146240 AGCD01050118;GBDF01262049;XM_005398627;XM_013521736;XM_013521737 XP_005398684;XP_013377190;XP_013377191 MODEL 8785506 ncrna LOC102026874 uncharacterized LOC102026874 NW_004955489 3616994 3657383 - 102026874 AGCD01059892;GBCB01098551;XR_001231180;XR_264017 MODEL 10164887 ncrna LOC106146941 uncharacterized LOC106146941 NW_004955506 6324103 6327013 - 106146941 AGCD01065412;GBBH01135228;XR_001231592;XR_001231593 MODEL 8812114 protein-coding Wnt9a Wnt family member 9A ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); embryonic forelimb morphogenesis (ortholog); embryonic skeletal system morphogenesis (ortholog); PARTICIPATES IN altered Wnt signaling, canonical pathway; pancreatic cancer pathway; Wnt signaling pathway; ASSOCIATED WITH breast cancer (ortholog); cholangiocarcinoma (ortholog); pancreatic cancer (ortholog); FOUND IN extracellular region (ortholog) NW_004955581 422028 438321 + 102016863 AGCD01075672;GBCB01076994;XM_005414245 XP_005414302 MODEL 8787248 protein-coding Spr sepiapterin reductase ENCODES a protein that exhibits protein homodimerization activity (ortholog); sepiapterin reductase (NADP+) activity (ortholog); INVOLVED IN cell morphogenesis involved in neuron differentiation (ortholog); dopamine metabolic process (ortholog); L-phenylalanine metabolic process (ortholog); PARTICIPATES IN dopa responsive dystonia pathway; Segawa syndrome pathway; ASSOCIATED WITH COVID-19 (ortholog); DOPA-responsive dystonia (ortholog); dystonia (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955424 12711064 12716000 - 102023169 AGCD01024617;GBCQ01002863;GBDJ01180871;XM_005385808 XP_005385865 MODEL 9042336 protein-coding LOC102003022 tubulin alpha chain-like NW_004955483 457068 458303 + 102003022 AGCD01057616;XM_013503762 XP_013359216 MODEL 9026239 pseudo LOC102020502 cell cycle control protein 50A pseudogene NW_004955402 7959763 7962271 - 102020502 AGCD01000188;XM_005372665;XM_005372666 MODEL 8938590 protein-coding Sh3kbp1 SH3 domain containing kinase binding protein 1 ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN positive regulation of B cell activation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Colonic Neoplasms (ortholog); immunodeficiency 61 (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955509 6157 344930 - 102003043 AGCD01065924;AGCD01065925;AGCD01065926;AGCD01065927;AGCD01065928;AGCD01065929;AGCD01065930;GBBH01118244;GBCB01003048;XM_005407792 XP_005407849 MODEL 9051689 pseudo LOC102028210 RNA-binding protein Nova-1 pseudogene NW_004955496 114091 125882 - 102028210 AGCD01062223 MODEL 10069427 protein-coding LOC106146227 olfactory receptor 56A4-like NW_004955414 21840881 21940274 - 106146227 AGCD01015434;AGCD01015435;AGCD01015436;AGCD01015437;AGCD01015438;XM_005380108 XP_005380165 MODEL 8989933 pseudo LOC102009138 heterogeneous nuclear ribonucleoprotein M pseudogene NW_004955403 28891551 28908137 - 102009138 AGCD01002352 MODEL 8733730 protein-coding Slc25a43 solute carrier family 25 member 43 NW_004955534 513757 548027 - 102012576 AGCD01070456;GBCQ01100708;XM_005410446 XP_005410503 MODEL 8852130 ncrna LOC102025106 uncharacterized LOC102025106 NW_004955413 19310741 19316830 + 102025106 AGCD01014198;XR_260088 MODEL 10180643 ncrna LOC106149230 uncharacterized LOC106149230 NW_004955440 19802918 19817629 - 106149230 AGCD01036645;GBBH01210632;XR_001235275 MODEL 8924571 protein-coding Lama4 laminin subunit alpha 4 INVOLVED IN blood vessel development (ortholog); brown fat cell differentiation (ortholog); negative regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); Brugada syndrome (ortholog); Brugada syndrome 9 (ortholog); FOUND IN basement membrane (ortholog); extracellular region (ortholog); neuromuscular junction (ortholog) NW_004955526 4330388 4465810 + 102013861 AGCD01069366;AGCD01069367;GBBH01228905;GBCE01032722;XM_005409785 XP_005409842 MODEL 10369015 ncrna LOC106148035 uncharacterized LOC106148035 NW_004955414 16494302 16496138 - 106148035 AGCD01015216;GBDF01254557;XR_001233152 MODEL 9046153 protein-coding Id4 inhibitor of DNA binding 4, HLH protein ENCODES a protein that exhibits RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); transcription regulator inhibitor activity (ortholog); INVOLVED IN brain development (ortholog); central nervous system myelination (ortholog); cerebral cortex neuron differentiation (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); cholestasis (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955483 6598804 6601496 - 102017128 AGCD01057783;GBCE01000857;GBDI01072421;XM_005403387 XP_005403444 MODEL 8975418 ncrna LOC102009935 uncharacterized LOC102009935 NW_004955471 831025 838931 - 102009935 AGCD01052965;GBDF01265719;XR_263511 MODEL 8865501 protein-coding LOC102003363 olfactory receptor 8K5-like NW_004955511 1379800 1390219 + 102003363 AGCD01066366;XM_005407957;XM_005407958;XM_005407959 XP_005408014;XP_005408015;XP_005408016 MODEL 8788947 protein-coding Tmem86b transmembrane protein 86B ENCODES a protein that exhibits alkenylglycerophosphocholine hydrolase activity (ortholog); D-lysine 5,6-aminomutase activity (ortholog); identical protein binding (ortholog); INVOLVED IN ether lipid metabolic process (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog) NW_004955567 985793 987673 + 102030132 AGCD01074450;GBDI01314542;XM_005413346 XP_005413403 MODEL 8895466 protein-coding Spa17 sperm autoantigenic protein 17 ASSOCIATED WITH Merkel cell carcinoma (ortholog); Neoplasm Metastasis (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); external side of plasma membrane (ortholog) NW_004955412 25741369 25753681 + 102011188 AGCD01013173;GBDF01006464;XM_005378430 XP_005378487 MODEL 8935405 protein-coding LOC102019530 olfactory receptor 2A12-like NW_004955537 2642133 2772590 - 102019530 AGCD01070933;AGCD01070934;AGCD01070935;AGCD01070936;AGCD01070937;AGCD01070938;GBDF01080801;GBDF01080802;XM_005410629 XP_005410686 MODEL 10137148 protein-coding LOC106146385 protein FAM133-like NW_004955476 10599144 10600984 + 106146385 AGCD01055425;GBDK01224504;GBDK01224505;XM_013502986 XP_013358440 MODEL 10083664 ncrna LOC106150048 uncharacterized LOC106150048 NW_004955462 6088921 6150885 - 106150048 AGCD01049271;AGCD01049272;GBCE01165438;XR_001236610 MODEL 8861164 protein-coding Ncoa5 nuclear receptor coactivator 5 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN glucose homeostasis (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); FOUND IN actin cytoskeleton (ortholog); nucleoplasm (ortholog) NW_004955445 11219630 11251856 + 102021808 AGCD01039683;AGCD01039684;AGCD01039685;GBDF01047631;XM_005392387;XM_005392388;XM_013518291 XP_005392444;XP_005392445;XP_013373745 MODEL 8767981 pseudo LOC102020505 non-histone chromosomal protein HMG-17 pseudogene NW_004955449 288367 289486 - 102020505 AGCD01041762 MODEL 8773901 protein-coding LOC102008793 collagen alpha-2(I) chain NW_004955580 161170 172197 - 102008793 AGCD01075587;AGCD01075588;AGCD01075589;GBDF01080395;XM_005414114 XP_005414171 MODEL 8964818 protein-coding LOC102009139 phosphatidylcholine transfer protein-like NW_004955451 6915885 6945860 - 102009139 AGCD01043218;AGCD01043219;AGCD01043220;GBDK01010809;XM_013519061 XP_013374515 MODEL 8968573 trna Trnat-cgu transfer RNA threonine (anticodon CGU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955442;NW_004955465;NW_004955465;NW_004955481 4512289;13846174;13285428;6565067 4512360;13846247;13285500;6565138 -;+;+;+ 101978813 AGCD01037528;AGCD01050597;AGCD01050627;AGCD01057031 MODEL 8940065 ncrna LOC102005793 uncharacterized LOC102005793 NW_004955470 11386077 11391036 - 102005793 AGCD01052887;GBDF01224584;XR_001237001;XR_263503 MODEL 8945498 protein-coding Pigc phosphatidylinositol glycan anchor biosynthesis class C INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH glycosylphosphatidylinositol biosynthesis defect 16 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog) NW_004955406 12891187 12893935 - 102029040 AGCD01005928;GBCB01025746;XM_005374858 XP_005374915 MODEL 8788617 protein-coding LOC102017983 histone H3 NW_004955483 832295 834112 - 102017983 AGCD01057632;XM_013503790 XP_013359244 MODEL 8893360 pseudo LOC102025468 malignant T-cell-amplified sequence 1-like NW_004955420 13677750 13679538 - 102025468 AGCD01020929 MODEL 39133526 snrna U4 U4 spliceosomal RNA 8788107 ncrna LOC102024038 uncharacterized LOC102024038 NW_004955429 22472048 22477861 - 102024038 AGCD01029028;GBCB01002019;XR_001234460;XR_261388 MODEL 8882361 ncrna LOC102026522 uncharacterized LOC102026522 NW_004955415 20689183 20719006 - 102026522 AGCD01016493;AGCD01016494;AGCD01016495;GBDF01194390;XR_260305 MODEL 8979055 protein-coding Oxld1 oxidoreductase like domain containing 1 FOUND IN mitochondrion (ortholog) NW_004955506 1433754 1435141 + 102030553 AGCD01065263;GBDF01111330;XM_005407268 XP_005407325 MODEL 8821884 pseudo LOC102011911 citrate synthase, mitochondrial-like NW_004955438 13790119 13791348 - 102011911 AGCD01035308 MODEL 39131970 snorna SNORD116 Small nucleolar RNA SNORD116 10359849 protein-coding LOC106146519 formin-like protein 6 NW_004955482 2297645 2305829 + 106146519 AGCD01057238;AGCD01057239;AGCD01057240;AGCD01057241;GBDF01181774;XM_013503710 XP_013359164 MODEL 8831957 protein-coding Lama5 laminin subunit alpha 5 ENCODES a protein that exhibits integrin binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); branching involved in salivary gland morphogenesis (ortholog); branching involved in ureteric bud morphogenesis (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH benign familial hematuria (ortholog); bent bone dysplasia syndrome 1 (ortholog); bent bone dysplasia syndrome 2 (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular matrix of synaptic cleft (ortholog) NW_004955528 1713110 1753374 + 102029325 AGCD01069569;GBBH01032813;GBCE01053732;XM_013507490;XM_013507491;XM_013507492 XP_013362944;XP_013362945;XP_013362946 MODEL 8821412 protein-coding Pfdn5 prefoldin subunit 5 ENCODES a protein that exhibits amyloid-beta binding (ortholog); unfolded protein holdase activity (ortholog); INVOLVED IN negative regulation of amyloid fibril formation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN cytosol (ortholog); prefoldin complex (ortholog) NW_004955458 555971 559927 + 102018261 AGCD01047133;AGCD01047134;GBBH01030586;XM_005397168 XP_005397225 MODEL 8941899 pseudo LOC102023740 sorting nexin-3 pseudogene NW_004955536 2093035 2094868 - 102023740 AGCD01070777 MODEL 9063432 ncrna LOC102026877 uncharacterized LOC102026877 NW_004955492 8779229 8780432 + 102026877 AGCD01060826;XR_001231250 MODEL 9056927 ncrna LOC102003024 uncharacterized LOC102003024 NW_004955419 21702352 21717956 + 102003024 AGCD01020282;GBDF01056389;XR_001233586;XR_001233587;XR_001233588;XR_001233589;XR_001233590;XR_001233591;XR_260649 MODEL 9042911 ncrna LOC102004403 uncharacterized LOC102004403 NW_004955427 13583687 13585755 + 102004403 AGCD01027253;GBDF01082612;XR_001234372 MODEL 8930427 protein-coding Sars2 seryl-tRNA synthetase 2, mitochondrial ASSOCIATED WITH HUPRA Syndrome (ortholog); FOUND IN mitochondrion (ortholog) NW_004955468 603778 613475 + 102003009 AGCD01051719;GBCQ01127049;XM_005399804 XP_005399861 MODEL 9068130 ncrna LOC102015271 uncharacterized LOC102015271 NW_004955403 46127900 46135618 + 102015271 AGCD01002850;GBBH01170811;XR_001233899;XR_259244 MODEL 8804133 ncrna LOC102006162 uncharacterized LOC102006162 NW_004955534 59116 62830 + 102006162 AGCD01070434;AGCD01070435;XR_264754 MODEL 8985873 protein-coding LOC102025110 taste receptor type 2 member 14-like NW_004955413 8203676 8204596 - 102025110 AGCD01013854;XM_005379632 XP_005379689 MODEL 9037443 protein-coding Pms1 PMS1 homolog 1, mismatch repair system component ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN mismatch repair (ortholog); response to xenobiotic stimulus (ortholog); PARTICIPATES IN altered mismatch repair pathway; colorectal cancer pathway; mismatch repair pathway; ASSOCIATED WITH breast cancer (ortholog); Colonic Polyps (ortholog); colorectal cancer (ortholog); FOUND IN MutLbeta complex (ortholog); nucleus (ortholog) NW_004955403 9021488 9100442 - 102005433 AGCD01001900;AGCD01001901;GBDK01434121;XM_005373313;XM_013512339 XP_005373370;XP_013367793 MODEL 10188273 ncrna LOC106146658 uncharacterized LOC106146658 NW_004955407 34592635 34595365 + 106146658 AGCD01007724;GBBH01113995;XR_001231202 MODEL 9009879 protein-coding LOC102018323 melanoma-associated antigen B1-like NW_004955531 614018 615601 - 102018323 AGCD01070003;GBDF01126490;GBDF01126491;XM_005410132 XP_005410189 MODEL 8776301 pseudo LOC102009936 probable RNA-binding protein 46 pseudogene NW_004955414 12245219 12246350 - 102009936 AGCD01015095 MODEL 39131391 protein-coding KLHL26 kelch like family member 26 8865222 protein-coding LOC102021317 granzyme B-like NW_004955409 35631253 35633975 + 102021317 AGCD01010427;GBDJ01147919;XM_005376985 XP_005377042 MODEL 9047365 protein-coding LOC102007258 glycine N-phenylacetyltransferase-like NW_004955511 3686412 3716368 - 102007258 AGCD01066472;AGCD01066473;AGCD01066474;GBCQ01037301;XM_005408050;XM_005408051;XM_005408052;XM_005408054;XM_005408055;XM_013506345;XM_013506346 XP_005408107;XP_005408108;XP_005408109;XP_005408111;XP_005408112;XP_013361799;XP_013361800 MODEL 9045983 ncrna LOC102012286 uncharacterized LOC102012286 NW_004955408 21941027 22001034 + 102012286 AGCD01008567;GBBH01167569;XR_001232370;XR_259698 MODEL 10364024 pseudo LOC106146942 AH receptor-interacting protein-like NW_004955407 31140051 31140688 - 106146942 AGCD01007642 MODEL 8848664 protein-coding LOC102028216 cytochrome P450 2C9-like NW_004955507 1257334 1309828 + 102028216 AGCD01065533;AGCD01065534;AGCD01065535;AGCD01065536;AGCD01065537;AGCD01065538;AGCD01065539;AGCD01065540;AGCD01065541;XM_013506146 XP_013361600 MODEL 8842242 protein-coding Spred1 sprouty related EVH1 domain containing 1 ENCODES a protein that exhibits phosphatase binding (ortholog); protein kinase binding (ortholog); protein serine/threonine kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of angiogenesis (ortholog); negative regulation of cell migration involved in sprouting angiogenesis (ortholog); negative regulation of epithelial to mesenchymal transition (ortholog); ASSOCIATED WITH Cafe-au-Lait Spots (ortholog); Costello syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955416 5288779 5376861 + 102007890 AGCD01016907;AGCD01016908;GBDI01256639;XM_005381197 XP_005381254 MODEL 8840983 protein-coding Tmem87a transmembrane protein 87A ENCODES a protein that exhibits mechanosensitive potassium channel activity (ortholog); voltage-gated monoatomic anion channel activity (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); detection of mechanical stimulus involved in sensory perception of touch (ortholog); intracellular pH reduction (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi cisterna membrane (ortholog); Golgi membrane (ortholog) NW_004955416 8938758 8990800 - 102019596 AGCD01017071;AGCD01017072;GBDK01145654;XM_005381329;XM_005381330;XR_001233300;XR_001233301;XR_001233302 XP_005381386;XP_005381387 MODEL 8789423 ncrna LOC102019531 uncharacterized LOC102019531 NW_004955437 13535860 13540498 + 102019531 AGCD01034661;GBCE01038393;XR_001235077 MODEL 8824474 protein-coding Spaca1 sperm acrosome associated 1 INVOLVED IN acrosome assembly (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH spermatogenic failure 85 (ortholog); FOUND IN acrosomal membrane (ortholog); acrosomal vesicle (ortholog) NW_004955411 14946324 14960901 + 102030397 AGCD01011926;AGCD01011927;GBDF01043494;XM_005377737 XP_005377794 MODEL 10304099 pseudo LOC106146386 polyadenylate-binding protein 1 pseudogene NW_004955406 12411059 12412296 + 106146386 AGCD01005916 MODEL 8907890 protein-coding Slc25a44 solute carrier family 25 member 44 ENCODES a protein that exhibits branched-chain amino acid transmembrane transporter activity (ortholog); INVOLVED IN branched-chain amino acid catabolic process (ortholog); branched-chain amino acid transport (ortholog); regulation of cold-induced thermogenesis (ortholog); FOUND IN mitochondrion (ortholog) NW_004955545 2347951 2364935 + 102023077 AGCD01071897;AGCD01071898;GBBH01172218;XM_005411661;XM_013508274 XP_005411718;XP_013363728 MODEL 9010161 protein-coding Sh3pxd2a SH3 and PX domains 2A ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); osteoclast fusion (ortholog); reactive oxygen species metabolic process (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); stroke (ortholog); FOUND IN cytoplasm (ortholog); podosome (ortholog) NW_004955485 6811857 7008011 + 102030427 AGCD01058629;AGCD01058630;GBDF01004113;GBDI01009548;XM_005403799 XP_005403856 MODEL 10326771 ncrna LOC106149231 uncharacterized LOC106149231 NW_004955440 19846244 19855130 - 106149231 AGCD01036646;GBDK01126024;XR_001235276 MODEL 8919651 protein-coding Eps8l3 EPS8 signaling adaptor L3 ENCODES a protein that exhibits actin filament binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN regulation of hair cycle (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); hypotrichosis 5 (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog) NW_004955435 13261730 13277117 - 102011142 AGCD01033199;GBDI01324674;XM_005388899;XM_005388900;XM_005388901 XP_005388956;XP_005388957;XP_005388958 MODEL 10118818 ncrna LOC106150049 uncharacterized LOC106150049 NW_004955462 9262852 9264945 - 106150049 AGCD01049335;XR_001236612;XR_001236613;XR_001236614 MODEL 8897789 pseudo LOC102003025 splicing factor 3A subunit 1-like NW_004955419 15519929 15520421 + 102003025 AGCD01020083 MODEL 10093904 protein-coding Tefm transcription elongation factor, mitochondrial ENCODES a protein that exhibits crossover junction DNA endonuclease activity (ortholog); transcription elongation factor activity (ortholog); INVOLVED IN mitochondrial DNA replication (ortholog); positive regulation of mitochondrial transcription (ortholog); regulation of oxidative phosphorylation (ortholog); ASSOCIATED WITH Combined Oxidative Phosphorylation Deficiency 58 (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955481 7034564 7042653 - 106146489 AGCD01057047;GBDF01156756;XM_013503463 XP_013358917 MODEL 9000346 pseudo LOC102020512 optineurin pseudogene NW_004955623 85965 87245 + 102020512 AGCD01077409 MODEL 9037335 ncrna LOC102027563 uncharacterized LOC102027563 NW_004955520 4069136 4078971 + 102027563 AGCD01068115;GBDF01194190;XR_264598 MODEL 9021863 protein-coding LOC102005795 fibrous sheath-interacting protein 2-like NW_004955473 4588318 4648716 + 102005795 AGCD01053953;AGCD01053954;GBDF01110725;XM_005401232;XM_013523062;XM_013523063 XP_005401289;XP_013378516;XP_013378517 MODEL 8942822 pseudo LOC102029991 deoxynucleotidyltransferase terminal-interacting protein 2-like NW_004955433 13429572 13432379 + 102029991 AGCD01031690 MODEL 8914499 protein-coding Bend6 BEN domain containing 6 ENCODES a protein that exhibits chromatin binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of Notch signaling pathway (ortholog); positive regulation of neuron differentiation (ortholog); FOUND IN nucleus (ortholog) NW_004955502 3123024 3152121 - 102027550 AGCD01064310;GBDF01305622;XM_005406887 XP_005406944 MODEL 39133527 snrna U4 U4 spliceosomal RNA 8700760 pseudo LOC102024039 RNA exonuclease 1 homolog pseudogene NW_004955431 8914638 8931636 - 102024039 AGCD01030148;AGCD01030149;XM_005387663 MODEL 9049007 protein-coding Wnt9b Wnt family member 9B ENCODES a protein that exhibits co-receptor binding (ortholog); receptor ligand activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); branching morphogenesis of an epithelial tube (ortholog); canonical Wnt signaling pathway (ortholog); PARTICIPATES IN Wnt signaling pathway; Wnt signaling, canonical pathway; FOUND IN extracellular region (ortholog) NW_004955478 10816405 10841416 + 102003128 AGCD01056151;AGCD01056152;GBCQ01093789;XM_005402302 XP_005402359 MODEL 10316718 protein-coding LOC106146242 N-acetyllactosaminide alpha-1,3-galactosyltransferase-like NW_004955419 6563001 6579770 + 106146242 AGCD01019859;AGCD01019860;GBDF01087774;XM_005382559;XM_005382561;XM_005382562 XP_005382616;XP_005382618;XP_005382619 MODEL 8715103 protein-coding Oxnad1 oxidoreductase NAD binding domain containing 1 FOUND IN mitochondrion (ortholog) NW_004955430 8550370 8586863 + 102027888 AGCD01029389;GBDF01193697;XM_005387452;XM_013515697;XM_013515698 XP_005387509;XP_013371151;XP_013371152 MODEL 10155436 ncrna LOC106146520 uncharacterized LOC106146520 NW_004955482 2310900 2320721 - 106146520 AGCD01057242;AGCD01057243;GBBH01199444;XR_001230990 MODEL 9007595 protein-coding Pfdn6 prefoldin subunit 6 ENCODES a protein that exhibits amyloid-beta binding (ortholog); protein-folding chaperone binding (ortholog); unfolded protein holdase activity (ortholog); INVOLVED IN chaperone-mediated protein complex assembly (ortholog); negative regulation of amyloid fibril formation (ortholog); protein folding (ortholog); FOUND IN prefoldin complex (ortholog); RPAP3/R2TP/prefoldin-like complex (ortholog) NW_004955437 1848571 1849824 + 102030666 AGCD01034239;GBBH01034499;XM_005389483 XP_005389540 MODEL 8893387 protein-coding LOC102029280 olfactory receptor 6N1-like NW_004955468 10685381 10686325 - 102029280 AGCD01052095;XM_005400160 XP_005400217 MODEL 15036855 trna Trnat-ggu transfer RNA threonine (anticodon GGU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978811 8946419 protein-coding LOC102009144 complement receptor type 1 NW_004955406 42927757 42997196 + 102009144 AGCD01006720;AGCD01006721;AGCD01006722;AGCD01006723;GBBH01063618;GBCE01049944;XM_013503302 XP_013358756 MODEL 8730016 protein-coding Spaca3 sperm acrosome associated 3 ENCODES a protein that exhibits lysozyme activity (ortholog); INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); sperm-egg recognition (ortholog); FOUND IN acrosomal matrix (ortholog); acrosomal membrane (ortholog); acrosomal vesicle (ortholog) NW_004955481 7832518 7840130 + 102028859 AGCD01057078;GBDF01008490;XM_005402831;XM_005402832;XM_005402833 XP_005402888;XP_005402889;XP_005402890 MODEL 8794878 protein-coding LOC102017986 neutrophil gelatinase-associated lipocalin-like NW_004955419 46267 52358 - 102017986 AGCD01019560;AGCD01019561;GBDJ01026132;XM_005382913 XP_005382970 MODEL 8716732 protein-coding Pigf phosphatidylinositol glycan anchor biosynthesis class F INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH ONYCHODYSTROPHY, OSTEODYSTROPHY, IMPAIRED INTELLECTUAL DEVELOPMENT, AND SEIZURES SYNDROME (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955441 13492334 13525581 - 102012131 AGCD01037151;GBDF01043189;XM_005390976;XM_005390977;XR_262076 XP_005391033;XP_005391034 MODEL 8887802 protein-coding LOC102003364 olfactory receptor 9I1-like NW_004955511 2907070 2908010 - 102003364 AGCD01066433;AGCD01066434;XM_013506378 XP_013361832 MODEL 10361284 protein-coding LOC106146659 uncharacterized LOC106146659 NW_004955489 4173019 4188976 + 106146659 AGCD01059898;XM_013504497;XM_013504498;XM_013504499;XM_013504500;XM_013504501;XM_013504502 XP_013359951;XP_013359952;XP_013359953;XP_013359954;XP_013359955;XP_013359956 MODEL 8848038 protein-coding LOC102006164 24-hydroxycholesterol 7-alpha-hydroxylase ENCODES a protein that exhibits 24S-hydroxycholesterol 7-alpha-hydroxylase activity (ortholog); steroid 7-alpha-hydroxylase activity (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); cholesterol catabolic process (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); hepatocellular carcinoma (ortholog) NW_004955437 11444780 11497268 - 102006164 AGCD01034574;GBDK01017216;XM_005389856 XP_005389913 MODEL 9050753 protein-coding LOC102026523 interferon-induced transmembrane protein 3-like NW_004955476 11730668 11731869 + 102026523 AGCD01055474;GBDJ01021197;XM_013502908 XP_013358362 MODEL 9058628 pseudo LOC102011913 60S ribosomal protein L35 pseudogene NW_004955545 891588 891958 - 102011913 AGCD01071824 MODEL 39131972 snorna SNORD116 Small nucleolar RNA SNORD116 8814304 ncrna LOC102009937 uncharacterized LOC102009937 NW_004955415 6291304 6307243 - 102009937 AGCD01016013;AGCD01016014;GBBH01127465;XR_001233263 MODEL 9061756 protein-coding Ncoa6 nuclear receptor coactivator 6 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin-protein adaptor activity (ortholog); enzyme binding (ortholog); INVOLVED IN brain development (ortholog); DNA damage response (ortholog); DNA-templated transcription initiation (ortholog); PARTICIPATES IN estrogen signaling pathway; glucocorticoid signaling pathway; histone modification pathway; ASSOCIATED WITH breast cancer (ortholog); cardiomyopathy (ortholog); colon cancer (ortholog); FOUND IN histone methyltransferase complex (ortholog); MLL3/4 complex (ortholog); nucleoplasm (ortholog) NW_004955422 26564535 26639516 + 102019285 AGCD01023292;AGCD01023293;AGCD01023294;GBDJ01115933;XM_005384819;XM_005384820;XM_005384822;XM_005384823;XM_013514087;XM_013514088 XP_005384876;XP_005384877;XP_005384879;XP_005384880;XP_013369541;XP_013369542 MODEL 8802016 ncrna LOC102004406 uncharacterized LOC102004406 NW_004955429 12619449 12635931 - 102004406 AGCD01028726;AGCD01028727;GBDF01079147;XR_261325 MODEL 9049082 ncrna LOC102008798 uncharacterized LOC102008798 NW_004955592 168536 235179 + 102008798 AGCD01076300;AGCD01076301;GBDF01077466;XR_001232541;XR_001232542;XR_265134;XR_265135;XR_265136 MODEL 9008251 protein-coding Tmem87b transmembrane protein 87B INVOLVED IN retrograde transport, endosome to Golgi (ortholog) NW_004955470 1996728 2045427 - 102024214 AGCD01052668;AGCD01052669;AGCD01052670;GBBH01119559;GBCQ01038715;XM_013522751 XP_013378205 MODEL 10334688 ncrna LOC106148036 uncharacterized LOC106148036 NW_004955414 16480744 16481721 + 106148036 AGCD01015216;GBDK01058037;XR_001233153 MODEL 8872922 protein-coding LOC102015275 phospholipase A2, membrane associated-like NW_004955452 611395 613020 - 102015275 AGCD01043820;XM_005394668 XP_005394725 MODEL 8929860 protein-coding Ide insulin degrading enzyme ENCODES a protein that exhibits amyloid-beta binding (ortholog); ATP binding (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN amyloid-beta clearance (ortholog); amyloid-beta clearance by cellular catabolic process (ortholog); amyloid-beta metabolic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Cognitive Dysfunction (ortholog); diabetic encephalopathy (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955425 819461 926440 + 102006593 AGCD01025202;AGCD01025203;AGCD01025204;AGCD01025205;AGCD01025206;GBDI01296471;XM_005385825 XP_005385882 MODEL 10117661 ncrna LOC106149232 uncharacterized LOC106149232 NW_004955440 15130652 15151912 + 106149232 AGCD01036486;GBCB01027680;XR_001235277 MODEL 8982372 protein-coding Slc25a45 solute carrier family 25 member 45 ENCODES a protein that exhibits dimethylarginine transmembrane transporter activity (ortholog); N(6),N(6),N(6)-trimethyl-L-lysine transmembrane transporter activity (ortholog); INVOLVED IN carnitine biosynthetic process (ortholog); ASSOCIATED WITH melanoma (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955422 19854935 19864585 + 102010271 AGCD01023041;AGCD01023042;GBDK01101373;XM_005384496;XM_005384497 XP_005384553;XP_005384554 MODEL 9039936 protein-coding LOC102018324 chromosome unknown open reading frame, human C6orf47 NW_004955437 192873 195159 - 102018324 AGCD01034108;GBCB01075013;XM_005389347 XP_005389404 MODEL 8796584 ncrna LOC102027565 uncharacterized LOC102027565 NW_004955528 1535294 1549525 + 102027565 AGCD01069564;GBCB01089843;XR_001231993;XR_264694;XR_264695 MODEL 8833658 protein-coding Lamb1 laminin subunit beta 1 ENCODES a protein that exhibits enzyme binding (ortholog); extracellular matrix structural constituent (ortholog); glycosphingolipid binding (ortholog); INVOLVED IN cell migration (ortholog); embryo implantation (ortholog); endodermal cell differentiation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); Classical Lissencephalies and Subcortical Band Heterotopias (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955410 12241235 12305433 - 102008605 AGCD01010850;AGCD01010851;GBCE01055047;XM_005377293 XP_005377350 MODEL 8966427 ncrna LOC102005799 uncharacterized LOC102005799 NW_004955476 1188807 1194269 + 102005799 AGCD01055201;GBDK01109467;XR_263617 MODEL 8969052 protein-coding Tek TEK receptor tyrosine kinase ENCODES a protein that exhibits growth factor binding (ortholog); identical protein binding (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell surface receptor protein tyrosine kinase signaling pathway (ortholog); cell surface receptor signaling pathway (ortholog); PARTICIPATES IN angiopoietin signaling pathway; ASSOCIATED WITH acute kidney tubular necrosis (ortholog); angiosarcoma (ortholog); arteriovenous malformation (ortholog); FOUND IN actin filament (ortholog); anchoring junction (ortholog); apical plasma membrane (ortholog) NW_004955472 7633790 7748130 - 102025569 AGCD01053624;AGCD01053625;AGCD01053626;AGCD01053627;AGCD01053628;GBDK01022711;XM_005401149;XM_005401150;XM_005401151 XP_005401206;XP_005401207;XP_005401208 MODEL 8784227 protein-coding Klhl28 kelch like family member 28 NW_004955409 16968099 16999697 + 102009583 AGCD01009756;GBDI01216368;XM_005376867;XM_005376868;XM_005376869 XP_005376924;XP_005376925;XP_005376926 MODEL 8793170 ncrna LOC102012289 uncharacterized LOC102012289 NW_004955410 7716614 7721059 + 102012289 AGCD01010722;GBDK01172238;XR_259826 MODEL 8850482 protein-coding LOC102026881 olfactory receptor 6V1-like NW_004955494 590301 594211 + 102026881 AGCD01061382;XM_013504917 XP_013360371 MODEL 10201761 protein-coding LOC106146943 collagen alpha-1(I) chain-like NW_004955407 31177549 31179654 + 106146943 AGCD01007642;XM_013506027 XP_013361481 MODEL 8886702 protein-coding Sart1 spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP INVOLVED IN mRNA splicing, via spliceosome (ortholog); positive regulation of cytotoxic T cell differentiation (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN Cajal body (ortholog); catalytic step 2 spliceosome (ortholog); Golgi apparatus (ortholog) NW_004955422 19360641 19370623 - 102022394 AGCD01023002;GBCE01006992;XM_005384438 XP_005384495 MODEL 8728685 protein-coding Spred2 sprouty related EVH1 domain containing 2 ENCODES a protein that exhibits protein kinase binding (ortholog); protein serine/threonine kinase inhibitor activity (ortholog); stem cell factor receptor binding (ortholog); INVOLVED IN negative regulation of epithelial to mesenchymal transition (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); negative regulation of intracellular signal transduction (ortholog); ASSOCIATED WITH achondroplasia (ortholog); Alzheimer's disease (ortholog); Noonan syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955424 19133568 19250118 + 102030213 AGCD01024808;AGCD01024809;AGCD01024810;GBDF01306128;XM_005385687;XM_013514715;XM_013514716 XP_005385744;XP_013370169;XP_013370170 MODEL 10100587 protein-coding LOC106146248 ly-6/neurotoxin-like protein 1 NW_004955454 1456047 1461275 - 106146248 AGCD01044969;GBDI01278174;XM_005395743 XP_005395800 MODEL 8757960 protein-coding LOC102029281 olfactory receptor 2AT4 NW_004955414 16696408 16697379 + 102029281 AGCD01015222;XM_005379897 XP_005379954 MODEL 9056834 protein-coding LOC102025111 T-cell ecto-ADP-ribosyltransferase 1-like NW_004955414 18887480 18897593 - 102025111 AGCD01015292;GBDJ01402723;XM_005379987 XP_005380044 MODEL 8886836 protein-coding Sh3pxd2b SH3 and PX domains 2B ENCODES a protein that exhibits phosphatidylinositol-3,5-bisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN adipose tissue development (ortholog); bone development (ortholog); cranial skeletal system development (ortholog); ASSOCIATED WITH angle-closure glaucoma (ortholog); Animal Disease Models (ortholog); bone development disease (ortholog); FOUND IN cytoplasm (ortholog); podosome (ortholog) NW_004955408 25103278 25169934 - 102025876 AGCD01008630;GBCE01104618;XM_013509338 XP_013364792 MODEL 10179051 ncrna LOC106150050 uncharacterized LOC106150050 NW_004955402 13908202 13918596 + 106150050 AGCD01000418;GBDF01289313;XR_001236616 MODEL 8910156 protein-coding LOC102003026 uncharacterized LOC102003026 NW_004955485 9190059 9193837 + 102003026 AGCD01058751;AGCD01058752;GBDF01251522;XM_013504053 XP_013359507 MODEL 8734776 protein-coding Tmem88 transmembrane protein 88 ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); protein localization to plasma membrane (ortholog); protein stabilization (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955467 9083623 9084834 - 102030511 AGCD01051483;GBDI01224232;XM_005399454 XP_005399511 MODEL 8898464 ncrna LOC102021318 uncharacterized LOC102021318 NW_004955410 18989630 19019952 + 102021318 AGCD01011016;GBCB01067072;XR_259849 MODEL 39133528 snrna U4 U4 spliceosomal RNA 10080987 ncrna LOC106149233 uncharacterized LOC106149233 NW_004955440 11046882 11078965 + 106149233 AGCD01036401;GBDK01107027;XR_001235278;XR_001235279;XR_001235280 MODEL 9013972 protein-coding LOC102007259 olfactory receptor 5B3-like NW_004955511 3322239 3323164 - 102007259 AGCD01066458;GBDF01075823;XM_013506402 XP_013361856 MODEL 10264729 protein-coding LOC106146660 translation initiation factor IF-2-like NW_004955489 492084 495859 + 106146660 AGCD01059807;GBDF01112295;GBDI01213026;XM_013504507 XP_013359961 MODEL 8753775 pseudo LOC102026524 proteasome subunit alpha type-2 pseudogene NW_004955478 6567970 6568741 - 102026524 AGCD01055902 MODEL 8737172 protein-coding Wrap53 WD repeat containing antisense to TP53 ENCODES a protein that exhibits histone binding (ortholog); identical protein binding (ortholog); protein carrier activity (ortholog); INVOLVED IN Cajal body organization (ortholog); positive regulation of DNA repair (ortholog); positive regulation of double-strand break repair (ortholog); ASSOCIATED WITH Autosomal Recessive Dyskeratosis Congenita (ortholog); autosomal recessive dyskeratosis congenita 3 (ortholog); Body Weight (ortholog); FOUND IN Cajal body (ortholog); chromosome (ortholog); cytosol (ortholog) NW_004955467 9225506 9240756 - 102006011 AGCD01051484;GBDK01319101;XM_005399465;XM_013522145 XP_005399522;XP_013377599 MODEL 8748609 protein-coding LOC102028217 olfactory receptor 5W2-like NW_004955511 791103 792035 + 102028217 AGCD01066343;XM_005407949 XP_005408006 MODEL 8737739 pseudo LOC102023741 transcription elongation factor B polypeptide 2 pseudogene NW_004955437 9931487 9932633 + 102023741 AGCD01034550 MODEL 9014055 protein-coding LOC102019532 melanoma-associated antigen 10-like NW_004955539 704919 709030 - 102019532 AGCD01071189;GBDF01042091;XM_005410902 XP_005410959 MODEL 9048541 protein-coding Sh3rf1 SH3 domain containing ring finger 1 ENCODES a protein that exhibits MAP kinase scaffold activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of extrinsic apoptotic signaling pathway (ortholog); neuron migration (ortholog); ASSOCIATED WITH retinal degeneration (ortholog); RETINAL DYSTROPHY WITH INNER RETINAL DYSFUNCTION AND GANGLION CELL ABNORMALITIES (ortholog); FOUND IN cytosol (ortholog); lamellipodium (ortholog) NW_004955403 36989509 37141188 + 102006972 AGCD01002558;AGCD01002559;AGCD01002560;AGCD01002561;AGCD01002562;GBDF01253018;GBDI01325736;XM_013513376 XP_013368830 MODEL 10221479 ncrna LOC106146387 uncharacterized LOC106146387 NW_004955476 10485436 10489483 + 106146387 AGCD01055423;GBDF01162246;XR_001230803 MODEL 8801604 protein-coding Oxr1 oxidation resistance 1 ENCODES a protein that exhibits oxidoreductase activity (ortholog); INVOLVED IN adult walking behavior (ortholog); cellular response to hydroperoxide (ortholog); negative regulation of cellular response to oxidative stress (ortholog); ASSOCIATED WITH cerebellar hyplasia/atrophy, epilepsy, and global developmental delay (ortholog); cerebellar hypoplasia (ortholog); chronic rhinosinusitis with nasal polyps (ortholog); FOUND IN mitochondrion (ortholog); nucleolus (ortholog) NW_004955417 29605962 29875041 + 102025685 AGCD01018603;AGCD01018604;AGCD01018605;AGCD01018606;AGCD01018607;AGCD01018608;AGCD01018609;AGCD01018610;AGCD01018611;GBCE01007831;XM_005381956;XM_005381958;XM_005381959;XM_005381960;XM_005381961;XM_005381962;XM_005381963;XM_005381964;XM_013512774 XP_005382013;XP_005382015;XP_005382016;XP_005382017;XP_005382018;XP_005382019;XP_005382020;XP_005382021;XP_013368228 MODEL 9065397 protein-coding LOC102025469 somatostatin FOUND IN neuron projection terminus; perikaryon NW_004955420 20203324 20204598 + 102025469 AGCD01021087;GBDI01064143;XM_005383251 XP_005383308 MODEL 8829237 protein-coding Pfkfb1 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 ENCODES a protein that exhibits 6-phosphofructo-2-kinase activity (ortholog); ATP binding (ortholog); fructose-2,6-bisphosphate 2-phosphatase activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); carbohydrate phosphorylation (ortholog); fructose 2,6-bisphosphate metabolic process (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; gluconeogenesis pathway; ASSOCIATED WITH hyperinsulinism (ortholog); long QT syndrome (ortholog); FOUND IN 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase complex (ortholog); cytosol (ortholog) NW_004955475 2279390 2343881 - 102025351 AGCD01054800;AGCD01054801;GBCB01000266;XM_005401535;XM_005401536;XM_013502854;XM_013502855;XM_013502856 XP_005401592;XP_005401593;XP_013358308;XP_013358309;XP_013358310 MODEL 8994818 protein-coding Epsti1 epithelial stromal interaction 1 INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to type II interferon (ortholog); gene expression (ortholog); ASSOCIATED WITH COVID-19 (ortholog); prostate cancer (ortholog) NW_004955518 790815 919869 - 102004964 AGCD01067745;AGCD01067746;AGCD01067747;AGCD01067748;AGCD01067749;GBDI01325591;XM_005409056;XM_013506970;XM_013506971 XP_005409113;XP_013362424;XP_013362425 MODEL 8844647 protein-coding LOC102004408 olfactory receptor 8K5-like NW_004955511 1428393 1429358 + 102004408 AGCD01066366;XM_013506374 XP_013361828 MODEL 9068203 pseudo LOC102020513 cytochrome c-like NW_004955403 23033301 23033617 - 102020513 AGCD01002238 MODEL 8749942 protein-coding Pms2 PMS1 homolog 2, mismatch repair system component ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); DNA binding (ortholog); MutSalpha complex binding (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); meiotic mismatch repair (ortholog); PARTICIPATES IN altered mismatch repair pathway; colorectal cancer pathway; mismatch repair pathway; ASSOCIATED WITH autosomal recessive progressive external ophthalmoplegia 1 (ortholog); Brain Neoplasms (ortholog); breast cancer (ortholog); FOUND IN MutLalpha complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955460 13762854 13791462 + 102023443 AGCD01048722;AGCD01048723;GBDF01225942;XM_005397895;XM_013521160 XP_005397952;XP_013376614 MODEL 8871429 pseudo LOC102017994 olfactory receptor 7E24-like NW_004955495 730711 731673 - 102017994 AGCD01061651 MODEL 10279164 pseudo LOC106146251 membrane magnesium transporter 1 pseudogene NW_004955465 1545745 1608988 - 106146251 AGCD01050340;AGCD01050341 MODEL 8836665 pseudo LOC102003366 protein archease pseudogene NW_004955513 4104178 4104694 + 102003366 AGCD01066919 MODEL 8990779 protein-coding Spaca4 sperm acrosome associated 4 INVOLVED IN binding of sperm to zona pellucida (ortholog); fertilization (ortholog); FOUND IN acrosomal vesicle (ortholog); inner acrosomal membrane (ortholog); outer acrosomal membrane (ortholog) NW_004955559 1937747 1938789 - 102008901 AGCD01073682;GBDF01009196;XM_005412948 XP_005413005 MODEL 8803354 ncrna LOC102029993 uncharacterized LOC102029993 NW_004955435 15611755 15650162 - 102029993 AGCD01033276;AGCD01033277;AGCD01033278;XR_001234848;XR_261701 MODEL 8987850 ncrna LOC102024042 uncharacterized LOC102024042 NW_004955522 936102 943819 - 102024042 AGCD01068353;AGCD01068354;GBDF01208604;XR_001231896 MODEL 8774820 protein-coding LOC102025112 olfactory receptor 51T1 NW_004955414 20490013 20494165 + 102025112 AGCD01015376;XM_005380474 XP_005380531 MODEL 8895412 protein-coding Bend7 BEN domain containing 7 NW_004955429 20674390 20756760 + 102010079 AGCD01028988;AGCD01028989;AGCD01028990;GBCE01135033;GBDK01082325;XM_005387164 XP_005387221 MODEL 39131974 snorna SNORD116 Small nucleolar RNA SNORD116 8985440 pseudo LOC102011914 N-alpha-acetyltransferase 50 pseudogene NW_004955441 5500863 5501537 + 102011914 AGCD01036878 MODEL 8833974 pseudo LOC102018329 plakophilin-4 pseudogene NW_004955537 2756117 2758521 - 102018329 AGCD01070938 MODEL 8862071 pseudo LOC102005801 ewing's tumor-associated antigen 1 pseudogene NW_004955476 28845 38954 + 102005801 AGCD01055190 MODEL 10215115 ncrna LOC106146521 uncharacterized LOC106146521 NW_004955407 12821909 12828037 - 106146521 AGCD01007140;GBDF01086755;XR_001230991 MODEL 8708767 ncrna LOC102023750 uncharacterized LOC102023750 NW_004955562 409617 461561 - 102023750 AGCD01073925;GBDK01125417;XR_001232360;XR_001232361;XR_001232362;XR_001232363;XR_001232364;XR_001232365 MODEL 8812691 protein-coding Tekt1 tektin 1 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); microtubule cytoskeleton (ortholog) NW_004955467 12278515 12301736 - 102010241 AGCD01051628;AGCD01051629;AGCD01051630;GBCQ01031839;XM_005399679;XM_013522226 XP_005399736;XP_013377680 MODEL 8838314 protein-coding LOC102015289 olfactory receptor 6C75 NW_004955458 2726283 2727218 - 102015289 AGCD01047241;XM_005397244 XP_005397301 MODEL 9002121 trna Trnat-ugu transfer RNA threonine (anticodon UGU) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955530;NW_004955550;NW_004955431;NW_004955550;NW_004955550 130485;1411138;19443004;1499781;1425424 130557;1411210;19443075;1499853;1425496 +;-;+;+;- 101978812 AGCD01030449;AGCD01069830;AGCD01072566;AGCD01072577 MODEL 9062219 pseudo LOC102009153 stereocilin-like NW_004955409 22950828 22960330 - 102009153 AGCD01010048;AGCD01010049 MODEL 9038190 ncrna LOC102008799 uncharacterized LOC102008799 NW_004955402 56514337 56517087 + 102008799 AGCD01001468;GBDF01212633;XR_259105 MODEL 8753799 ncrna LOC102029283 uncharacterized LOC102029283 NW_004955471 7416469 7420332 + 102029283 AGCD01053148;GBDI01040546;XR_001237043;XR_263528 MODEL 8746796 pseudo LOC102003030 high mobility group protein B2 pseudogene NW_004955420 23360748 23364378 - 102003030 AGCD01021245 MODEL 9013088 protein-coding Pigg phosphatidylinositol glycan anchor biosynthesis class G (EMM blood group) ENCODES a protein that exhibits mannose-ethanolamine phosphotransferase activity (ortholog); transferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); hyperphosphatasia with impaired intellectual development syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955514 119804 152603 + 102004960 AGCD01066997;GBDJ01395605;XM_005408666;XM_005408667;XM_013506834;XM_013506835;XM_013506836;XR_264489 XP_005408723;XP_005408724;XP_013362288;XP_013362289;XP_013362290 MODEL 8768599 protein-coding Slc25a46 solute carrier family 25 member 46 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN autophagy of mitochondrion (ortholog); cerebellar Purkinje cell differentiation (ortholog); cristae formation (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 6 (ortholog); Charcot-Marie-Tooth Disease Type 6B (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955418 4316790 4342748 - 102019172 AGCD01018820;AGCD01018821;GBDJ01348816;XM_005382173;XM_013513025 XP_005382230;XP_013368479 MODEL 9060472 ncrna LOC102027571 uncharacterized LOC102027571 NW_004955438 20148343 20165855 - 102027571 AGCD01035509;GBDF01076352;XR_261953 MODEL 8891369 protein-coding Lamb2 laminin subunit beta 2 ENCODES a protein that exhibits integrin binding (ortholog); structural constituent of synapse-associated extracellular matrix (ortholog); INVOLVED IN astrocyte development (ortholog); axon extension involved in regeneration (ortholog); axon guidance (ortholog); ASSOCIATED WITH atypical hemolytic-uremic syndrome (ortholog); cognitive disorder (ortholog); Diabetic Nephropathies (ortholog); FOUND IN basement membrane (ortholog); laminin trimer (ortholog); laminin-121 trimer (ortholog) NW_004955532 1115412 1127264 - 102009983 AGCD01070165;GBCC01019330;XM_005410192 XP_005410249 MODEL 8829488 ncrna LOC102028218 uncharacterized LOC102028218 NW_004955511 5415793 5435919 + 102028218 AGCD01066562;AGCD01066563;GBDF01050964;XR_001231710;XR_001231711;XR_264431 MODEL 10183540 ncrna LOC106148037 uncharacterized LOC106148037 NW_004955403 2093434 2096800 + 106148037 AGCD01001731;AGCD01001732;GBDF01207288;XR_001233154 MODEL 9054031 protein-coding Ncoa7 nuclear receptor coactivator 7 ENCODES a protein that exhibits nuclear receptor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN negative regulation of cellular response to oxidative stress (ortholog); negative regulation of peptidyl-cysteine S-nitrosylation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog) NW_004955436 7110879 7238509 + 102003172 AGCD01033702;AGCD01033703;AGCD01033704;GBCQ01000043;XM_005389157;XM_005389158;XM_005389159;XM_005389160;XM_013516644 XP_005389214;XP_005389215;XP_005389216;XP_005389217;XP_013372098 MODEL 10322042 ncrna LOC106146388 uncharacterized LOC106146388 NW_004955476 10518370 10529701 + 106146388 AGCD01055424;GBDF01249671;XR_001230804;XR_001230805 MODEL 8879960 protein-coding Sart3 spliceosome associated factor 3, U4/U6 recycling protein ENCODES a protein that exhibits histone binding (ortholog); protein-macromolecule adaptor activity (ortholog); U4 snRNA binding (ortholog); INVOLVED IN cell morphogenesis (ortholog); hematopoietic stem cell proliferation (ortholog); homeostasis of number of cells (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Porokeratosis 3, Multiple Types (ortholog); FOUND IN Cajal body (ortholog); cytoplasm (ortholog); nuclear speck (ortholog) NW_004955455 9802260 9833326 - 102024529 AGCD01045931;GBCB01076004;XM_005396463;XM_005396464 XP_005396520;XP_005396521 MODEL 8717328 protein-coding Spred3 sprouty related EVH1 domain containing 3 INVOLVED IN negative regulation of epithelial to mesenchymal transition (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); negative regulation of lens fiber cell differentiation (ortholog); FOUND IN plasma membrane (ortholog) NW_004955468 1030964 1039495 - 102014764 AGCD01051748;GBDF01220614;XM_005399849;XM_005399850;XM_005399851;XM_005399852;XM_013522465;XM_013522466;XM_013522467 XP_005399906;XP_005399907;XP_005399908;XP_005399909;XP_013377919;XP_013377920;XP_013377921 MODEL 8814206 protein-coding Idh1 isocitrate dehydrogenase (NADP(+)) 1 ENCODES a protein that exhibits identical protein binding (ortholog); isocitrate dehydrogenase (NADP+) activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN 2-oxoglutarate metabolic process (ortholog); female gonad development (ortholog); glutathione metabolic process (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955457 6851542 6869452 + 102006982 AGCD01046855;AY463492;GBDJ01134359;XM_005396966 XP_005397023 MODEL 8838874 protein-coding LOC102006165 cytochrome c-type heme lyase ENCODES a protein that exhibits heme binding (ortholog); holocytochrome-c synthase activity (ortholog); INVOLVED IN cytochrome c biosynthetic process (ortholog); cytochrome c-heme linkage (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); mitochondrion (ortholog) NW_004955544 2105486 2117830 - 102006165 AGCD01071732;GBCB01062002;XM_005411390 XP_005411447 MODEL 8736728 protein-coding LOC102009952 uncharacterized LOC102009952 NW_004955420 29396157 29403592 - 102009952 AGCD01021499;AGCD01021500;GBCE01185548;XM_013513408;XR_001233705;XR_001233706;XR_001233707;XR_260774;XR_260775 XP_013368862 MODEL 8993131 protein-coding Tmem8b transmembrane protein 8B INVOLVED IN cell-matrix adhesion (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955472 467027 489287 - 102004470 AGCD01053339;GBDF01221769;XM_005400989;XM_005400990;XM_005400991;XM_005400992;XM_013523028;XM_013523030;XM_013523031 XP_005401046;XP_005401047;XP_005401048;XP_005401049;XP_013378482;XP_013378484;XP_013378485 MODEL 8796332 protein-coding Trnau1ap tRNA selenocysteine 1 associated protein 1 ENCODES a protein that exhibits tRNA binding (ortholog); INVOLVED IN selenocysteine incorporation (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955452 7645715 7663165 + 102017838 AGCD01044179;AGCD01044180;GBDF01189732;XM_005394958 XP_005395015 MODEL 8713119 ncrna LOC102003369 uncharacterized LOC102003369 NW_004955518 211147 307647 + 102003369 AGCD01067721;AGCD01067722;AGCD01067723;AGCD01067724;AGCD01067725;AGCD01067726;AGCD01067727;GBDF01095069;XR_001231851;XR_001231852 MODEL 8948003 pseudo LOC102007260 glutaredoxin-2, mitochondrial pseudogene NW_004955430 13298152 13298519 - 102007260 AGCD01029530 MODEL 10077646 protein-coding LOC106146661 divergent paired-related homeobox-like NW_004955490 3529477 3529844 + 106146661 AGCD01060168;XM_013504517 XP_013359971 MODEL 8836279 protein-coding Spaca5 sperm acrosome associated 5 NW_004955516 103674 106082 - 102012568 AGCD01067369;GBDF01189240;XM_005408932 XP_005408989 MODEL 8802976 ncrna LOC102012292 uncharacterized LOC102012292 NW_004955463 1605016 1606453 - 102012292 AGCD01049525;GBDJ01265798;XR_001236656 MODEL 8812413 pseudo LOC102026882 zinc finger protein 658B-like NW_004955422 24154984 24179291 + 102026882 AGCD01023215;AGCD01023216 MODEL 9007441 protein-coding LOC102026525 olfactory receptor 139 NW_004955481 114897 115838 - 102026525 AGCD01056781;XM_005402549 XP_005402606 MODEL 9055945 protein-coding Wrap73 WD repeat containing, antisense to TP73 INVOLVED IN mitotic spindle assembly (ortholog); positive regulation of non-motile cilium assembly (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog) NW_004955486 7992684 8006121 + 102026530 AGCD01059144;AGCD01059145;GBDF01119400;XM_005404146;XM_005404147 XP_005404203;XP_005404204 MODEL 8840978 protein-coding LOC102019533 olfactory receptor 6B2-like NW_004955542 1313123 1324139 + 102019533 AGCD01071502;XM_005411170 XP_005411227 MODEL 9039450 pseudo LOC102005802 60S ribosomal protein L37 pseudogene NW_004955416 8201222 8202250 - 102005802 AGCD01017037;XR_260372 MODEL 8920109 protein-coding LOC102025471 uncharacterized LOC102025471 NW_004955487 5300384 5322622 - 102025471 AGCD01059326;AGCD01059327;AGCD01059328;GBDF01234745;XM_013504336 XP_013359790 MODEL 8883217 protein-coding Sh3rf2 SH3 domain containing ring finger 2 ENCODES a protein that exhibits phosphatase binding (ortholog); protein phosphatase 1 binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of JNK cascade (ortholog); negative regulation of protein ubiquitination (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955415 8024984 8148970 - 102019057 AGCD01016063;AGCD01016064;AGCD01016065;GBCB01038742;XM_005380683;XM_005380684;XM_005380685 XP_005380740;XP_005380741;XP_005380742 MODEL 8926264 protein-coding Oxsm 3-oxoacyl-ACP synthase, mitochondrial ENCODES a protein that exhibits 3-oxoacyl-[acyl-carrier-protein] synthase activity (ortholog); INVOLVED IN acyl-CoA metabolic process (ortholog); medium-chain fatty acid biosynthetic process (ortholog); short-chain fatty acid biosynthetic process (ortholog); FOUND IN mitochondrion (ortholog) NW_004955430 17644800 17661097 + 102014075 AGCD01029670;AGCD01029671;GBCE01010104;XM_005387492;XM_005387494;XM_005387495;XM_013515677 XP_005387549;XP_005387551;XP_005387552;XP_013371131 MODEL 8937993 protein-coding LOC102028219 olfactory receptor 4P4-like NW_004955511 457907 458907 + 102028219 AGCD01066332;GBDF01039142;XM_005408191 XP_005408248 MODEL 8817094 protein-coding Epx eosinophil peroxidase ENCODES a protein that exhibits lactoperoxidase activity (ortholog); peroxidase activity (ortholog); INVOLVED IN antibacterial innate immune response (ortholog); defense response to nematode (ortholog); eosinophil migration (ortholog); ASSOCIATED WITH allergic asthma (ortholog); asthma (ortholog); Eosinophilic Asthma (ortholog) NW_004955451 4818809 4828913 - 102029463 AGCD01043142;GBBH01198007;XM_005394034;XM_005394035 XP_005394091;XP_005394092 MODEL 8792758 protein-coding Pfkfb2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2 ENCODES a protein that exhibits 6-phosphofructo-2-kinase activity (ortholog); fructose-2,6-bisphosphate 2-phosphatase activity (ortholog); kinase binding (ortholog); INVOLVED IN fructose 2,6-bisphosphate metabolic process (ortholog); glycolytic process (ortholog); PARTICIPATES IN glycolysis pathway; FOUND IN 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase complex (ortholog); nucleoplasm (ortholog) NW_004955406 42573210 42601994 + 102025208 AGCD01006712;GBDJ01171540;XM_005375413;XM_005375414;XM_005375415;XM_013502822;XM_013502828;XM_013502845;XM_013502862;XR_001230756;XR_001230757 XP_005375470;XP_005375471;XP_005375472;XP_013358276;XP_013358282;XP_013358299;XP_013358316 MODEL 8775530 protein-coding LOC102004411 olfactory receptor 5D14-like NW_004955511 585205 608647 + 102004411 AGCD01066333;AGCD01066334;AGCD01066335;AGCD01066336;XM_013506359 XP_013361813 MODEL 8850307 protein-coding Tekt2 tektin 2 INVOLVED IN flagellated sperm motility (ortholog); inner dynein arm assembly (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); centriole (ortholog) NW_004955452 14117043 14120800 + 102025535 AGCD01044451;GBCE01034235;XM_005395165;XM_013519531;XM_013519532 XP_005395222;XP_013374985;XP_013374986 MODEL 9043343 protein-coding LOC102020515 serine protease 29-like NW_004955690 42889 45014 - 102020515 AGCD01078063;GBBH01115238;XM_005415071 XP_005415128 MODEL 39133529 snrna U4 U4 spliceosomal RNA 10132704 protein-coding LOC106146253 olfactory receptor 5B3-like NW_004955511 3112695 3113642 - 106146253 AGCD01066443;XM_013506382 XP_013361836 MODEL 10065049 ncrna LOC106149234 uncharacterized LOC106149234 NW_004955441 4238542 4241612 + 106149234 AGCD01036837;GBCE01177931;XR_001235284 MODEL 8727902 ncrna LOC102024044 uncharacterized LOC102024044 NW_004955435 14761331 14782655 + 102024044 AGCD01033249;AGCD01033250;GBDF01046413;XR_001234869;XR_001234870;XR_261690;XR_261691;XR_261692;XR_261693;XR_261694 MODEL 8835822 ncrna LOC102025114 uncharacterized LOC102025114 NW_004955415 29659897 29684279 - 102025114 AGCD01016654;GBCE01080812;XR_001233189;XR_001233190;XR_260322 MODEL 8931485 protein-coding Best1 bestrophin 1 ENCODES a protein that exhibits bicarbonate channel activity (ortholog); chloride channel activity (ortholog); identical protein binding (ortholog); INVOLVED IN chloride transport (ortholog); detection of light stimulus involved in visual perception (ortholog); gamma-aminobutyric acid secretion, neurotransmission (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; ASSOCIATED WITH autosomal dominant vitreoretinochoroidopathy (ortholog); bestrophinopathy (ortholog); cone-rod dystrophy (ortholog); FOUND IN basal plasma membrane (ortholog); basolateral plasma membrane (ortholog); chloride channel complex (ortholog) NW_004955511 5773025 5783800 - 102007797 AGCD01066581;GBDF01053629;XM_005408133;XM_005408134;XM_013506425;XM_013506426;XR_001231698 XP_005408190;XP_005408191;XP_013361879;XP_013361880 MODEL 8951451 pseudo LOC102011915 solute carrier family 35 member G1-like NW_004955549 2589395 2589895 + 102011915 AGCD01072478 MODEL 8872761 protein-coding Slc25a47 solute carrier family 25 member 47 ENCODES a protein that exhibits acetyl-CoA transmembrane transporter activity (ortholog); NAD transmembrane transporter activity (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); prostate cancer (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955438 21406270 21413946 + 102005970 AGCD01035542;GBBH01182249;XM_005390431;XM_005390432 XP_005390488;XP_005390489 MODEL 8788622 protein-coding LOC102018332 uncharacterized LOC102018332 NW_004955437 7937031 7944587 - 102018332 AGCD01034476;GBCB01119722;XM_013516734 XP_013372188 MODEL 9054983 protein-coding Tmem9 transmembrane protein 9 INVOLVED IN endosomal lumen acidification (ortholog); lysosomal lumen acidification (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); FOUND IN late endosome (ortholog); late endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955406 37279885 37299196 - 102010022 AGCD01006572;AGCD01006573;GBBH01033294;XM_005375161;XM_005375162 XP_005375218;XP_005375219 MODEL 10378174 ncrna LOC106150051 uncharacterized LOC106150051 NW_004955462 2601698 2610948 - 106150051 AGCD01049177;XR_001236617 MODEL 10368643 ncrna LOC106148038 uncharacterized LOC106148038 NW_004955414 28632368 28650124 + 106148038 AGCD01015682;GBCE01120048;XR_001233155;XR_001233156 MODEL 9041373 pseudo LOC102023752 mitochondrial import inner membrane translocase subunit Tim10 pseudogene NW_004955568 1613428 1613801 - 102023752 AGCD01074550 MODEL 8943748 ncrna LOC102015291 uncharacterized LOC102015291 NW_004955409 5874528 5879794 + 102015291 AGCD01009326;GBDF01211387;XR_259754 MODEL 8708415 protein-coding Pmvk phosphomevalonate kinase ENCODES a protein that exhibits ATP binding (ortholog); phosphomevalonate kinase activity (ortholog); INVOLVED IN cholesterol biosynthetic process (ortholog); cholesterol biosynthetic process via desmosterol (ortholog); cholesterol biosynthetic process via lathosterol (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH genetic disease (ortholog); porokeratosis (ortholog); Porokeratosis 1, Multiple Types (ortholog); FOUND IN cytosol (ortholog); peroxisome (ortholog) NW_004955545 1421562 1440038 - 102015153 AGCD01071854;AGCD01071855;GBCB01025659;XM_005411529;XM_013508335 XP_005411586;XP_013363789 MODEL 8837595 pseudo LOC102017996 40S ribosomal protein S15 pseudogene NW_004955423 7792117 7792604 - 102017996 AGCD01023611 MODEL 10248219 protein-coding LOC106146389 uncharacterized LOC106146389 NW_004955476 6517530 6525346 + 106146389 AGCD01055332;GBBH01016342;XM_013503003;XM_013503004;XM_013503005;XM_013503006 XP_013358457;XP_013358458;XP_013358459;XP_013358460 MODEL 8798963 protein-coding LOC102003032 uncharacterized LOC102003032 NW_004955421 8414832 8416723 + 102003032 AGCD01021811;GBDF01288165;XM_005383920 XP_005383977 MODEL 8858367 pseudo LOC102029995 uncharacterized LOC102029995 NW_004955529 3709422 3740571 - 102029995 AGCD01069801 MODEL 8987813 pseudo LOC102021323 BTB/POZ domain-containing protein KCTD2-like NW_004955464 12405610 12412983 - 102021323 AGCD01050195;AGCD01050196 MODEL 8808397 protein-coding Klhl29 kelch like family member 29 NW_004955469 5787946 5993610 + 102020554 AGCD01052357;AGCD01052358;AGCD01052359;AGCD01052360;AGCD01052361;AGCD01052362;GBDI01311001;XM_005400361;XM_005400364;XM_013522637 XP_005400418;XP_005400421;XP_013378091 MODEL 8887047 protein-coding LOC102009953 uncharacterized LOC102009953 NW_004955489 8135465 8209866 - 102009953 AGCD01060001;AGCD01060002;AGCD01060003;AGCD01060004;AGCD01060005;AGCD01060006;AGCD01060007;GBDJ01241202;XM_013504450 XP_013359904 MODEL 8759035 protein-coding Pigh phosphatidylinositol glycan anchor biosynthesis class H INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH Glycosylphosphatidylinositol Biosynthesis Defect 17 (ortholog); prostate cancer (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog) NW_004955466 2601368 2616255 + 102011852 AGCD01050748;AGCD01050749;AGCD01050750;GBBH01168046;XM_005399070;XM_005399071;XM_005399072;XM_013521893;XR_263283;XR_263284 XP_005399127;XP_005399128;XP_005399129;XP_013377347 MODEL 8703303 protein-coding Idh2 isocitrate dehydrogenase (NADP(+)) 2 ENCODES a protein that exhibits isocitrate dehydrogenase (NADP+) activity (ortholog); INVOLVED IN NADP+ biosynthetic process (ortholog); negative regulation of glial cell migration (ortholog); negative regulation of glial cell proliferation (ortholog); ASSOCIATED WITH 2-hydroxyglutaric aciduria (ortholog); acute myeloid leukemia (ortholog); acute myocardial infarction (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); peroxisome (ortholog) NW_004955416 15197611 15212919 + 102023150 AGCD01017308;AGCD01017309;GBCQ01003629;XM_005381533;XM_005381534 XP_005381590;XP_005381591 MODEL 10088049 ncrna LOC106146522 uncharacterized LOC106146522 NW_004955482 1573948 1580116 - 106146522 AGCD01057221;GBDJ01419993;XR_001230994;XR_001230995 MODEL 8975883 protein-coding LOC102027574 ribonuclease 4 NW_004955550 1505677 1524508 + 102027574 AGCD01072578;GBBH01033994;XM_005412069;XM_005412070;XM_005412071;XM_005412072 XP_005412126;XP_005412127;XP_005412128;XP_005412129 MODEL 8771631 protein-coding LOC102026884 suppressor of SWI4 1 homolog NW_004955495 1446084 1452701 + 102026884 AGCD01061692;AGCD01061693;GBCQ01100175;XM_005406128 XP_005406185 MODEL 8810142 protein-coding Lamb3 laminin subunit beta 3 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); endodermal cell differentiation (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 1A (ortholog); autistic disorder (ortholog); FOUND IN basement membrane (ortholog); laminin-332 trimer (ortholog) NW_004955489 2547611 2603079 + 102024688 AGCD01059872;GBCQ01088494;XM_005404541;XM_005404542;XM_005404543 XP_005404598;XP_005404599;XP_005404600 MODEL 8785499 protein-coding LOC102026529 histone H3.1 NW_004955483 993625 1009250 - 102026529 AGCD01057638;GBDF01118145;XM_013503785;XM_013503786;XM_013503787;XM_013503788 XP_013359239;XP_013359240;XP_013359241;XP_013359242 MODEL 8761316 protein-coding LOC102009160 putative olfactory receptor 2W6 NW_004955465 13945042 13945998 - 102009160 AGCD01050638;XM_005399018 XP_005399075 MODEL 9038333 protein-coding Ncor1 nuclear receptor corepressor 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (ortholog); cellular response to Thyroglobulin triiodothyronine (ortholog); cerebellum development (ortholog); PARTICIPATES IN aldosterone signaling pathway; androgen signaling pathway; cortisol signaling pathway; ASSOCIATED WITH Acute-Phase Reaction (ortholog); anxiety disorder (ortholog); autism spectrum disorder (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); histone deacetylase complex (ortholog) NW_004955467 1408292 1568539 - 102012299 AGCD01051264;AGCD01051265;AGCD01051266;AGCD01051267;AGCD01051268;GBDF01045203;GBDI01072467;XM_013522047 XP_013377501 MODEL 8843628 ncrna LOC102029289 uncharacterized LOC102029289 NW_004955477 2242667 2247549 - 102029289 AGCD01055518;GBDF01286632;XR_263653 MODEL 9053266 protein-coding Spring1 SREBF pathway regulator in golgi 1 INVOLVED IN positive regulation of SREBP signaling pathway (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955455 14331512 14349252 + 102024763 AGCD01046089;GBDJ01275881;XM_005396552 XP_005396609 MODEL 8868605 pseudo LOC102006168 40S ribosomal protein S2 pseudogene NW_004955442 9115157 9116092 + 102006168 AGCD01037662 MODEL 8790109 protein-coding Tekt3 tektin 3 INVOLVED IN cilium assembly (ortholog); flagellated sperm motility (ortholog); regulation of brood size (ortholog); ASSOCIATED WITH spermatogenic failure 81 (ortholog); FOUND IN acrosomal membrane (ortholog); acrosomal vesicle (ortholog); axonemal A tubule inner sheath (ortholog) NW_004955467 2347996 2381346 + 102020898 AGCD01051310;GBDF01051528;XM_005399332 XP_005399389 MODEL 39133530 snrna U4 U4 spliceosomal RNA 8754672 trna Trnav-aac transfer RNA valine (anticodon AAC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978798 AGCD01020530;AGCD01050590;AGCD01050597;AGCD01050600;AGCD01057602;AGCD01069830;AGCD01071614 MODEL 10093912 ncrna LOC106146662 uncharacterized LOC106146662 NW_004955490 4227241 4235068 - 106146662 AGCD01060185;GBBH01223397;XR_001231204 MODEL 8721736 ncrna LOC102007261 uncharacterized LOC102007261 NW_004955431 18572768 18575376 - 102007261 AGCD01030431;XR_261488 MODEL 8767039 protein-coding Spaca7 sperm acrosome associated 7 INVOLVED IN negative regulation of cell adhesion (ortholog); single fertilization (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955404 1050098 1077184 - 102014315 AGCD01003217;AGCD01003218;GBDF01009174;XM_013515703;XM_013515707 XP_013371157;XP_013371161 MODEL 8823121 pseudo LOC102003373 bile acid receptor-like NW_004955435 18126734 18135541 + 102003373 AGCD01033389;AGCD01033390 MODEL 8916076 protein-coding LOC102012303 NADH-cytochrome b5 reductase 3 ENCODES a protein that exhibits ADP binding (ortholog); AMP binding (ortholog); cytochrome-b5 reductase activity, acting on NAD(P)H (ortholog); INVOLVED IN nitric oxide biosynthetic process (ortholog); ASSOCIATED WITH breast cancer (ortholog); Congenital Methemoglobinemia (ortholog); congenital myopathy 1A (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955413 27971140 27979905 - 102012303 AGCD01014539;GBCB01020264;GBDI01016413;XM_013511507 XP_013366961 MODEL 9040590 protein-coding Best2 bestrophin 2 ENCODES a protein that exhibits bicarbonate channel activity (ortholog); chloride channel activity (ortholog); intracellularly ligand-gated monoatomic ion channel activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); chloride transmembrane transport (ortholog); chloride transport (ortholog); FOUND IN basolateral plasma membrane (ortholog); chloride channel complex (ortholog); cilium (ortholog) NW_004955415 31846053 31851628 + 102020907 AGCD01016698;GBCC01018119;XM_005381024 XP_005381081 MODEL 8902492 ncrna LOC102019535 uncharacterized LOC102019535 NW_004955439 136492 145739 + 102019535 AGCD01035579;AGCD01035580;GBDI01211031;XR_001235216 MODEL 8954281 ncrna LOC102005805 uncharacterized LOC102005805 NW_004955417 31526897 31527811 + 102005805 AGCD01018654;GBDI01226891;XR_260525 MODEL 8945201 protein-coding Klhl3 kelch like family member 3 ENCODES a protein that exhibits cullin family protein binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN distal tubule morphogenesis (ortholog); gene expression (ortholog); monoatomic ion homeostasis (ortholog); ASSOCIATED WITH autosomal dominant pseudohypoaldosteronism type 1 (ortholog); cerebral palsy (ortholog); genetic disease (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytosol (ortholog) NW_004955408 32596497 32719967 - 102016451 AGCD01008849;AGCD01008850;AGCD01008851;AGCD01008852;AGCD01008853;GBDJ01164743;XM_005376502;XM_005376503;XM_005376504;XM_005376505;XM_005376506;XM_013506859 XP_005376559;XP_005376560;XP_005376561;XP_005376562;XP_005376563;XP_013362313 MODEL 8966319 pseudo LOC102025472 etoposide-induced protein 2.4 homolog pseudogene NW_004955421 13638719 13639931 + 102025472 AGCD01021947 MODEL 8805165 protein-coding Sash1 SAM and SH3 domain containing 1 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); mitogen-activated protein kinase kinase kinase binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN positive regulation of angiogenesis (ortholog); positive regulation of endothelial cell migration (ortholog); positive regulation of JUN kinase activity (ortholog); ASSOCIATED WITH Cancer, Alopecia, Pigment Dyscrasia, Onychodystrophy, and Keratoderma (ortholog); developmental and epileptic encephalopathy 13 (ortholog); Dyschromatosis Universalis Hereditaria 1 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955439 12551361 12729500 - 102016200 AGCD01035939;AGCD01035940;AGCD01035941;AGCD01035942;AGCD01035943;AGCD01035944;AGCD01035945;GBCE01076514;GBDI01179673;XM_013517361 XP_013372815 MODEL 8844752 protein-coding Sh3rf3 SH3 domain containing ring finger 3 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN positive regulation of JNK cascade (ortholog); protein autoubiquitination (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955470 12446604 12615689 + 102006652 AGCD01052932;AGCD01052933;AGCD01052934;AGCD01052935;GBDF01142813;XM_005400847 XP_005400904 MODEL 9067825 pseudo LOC102023753 translationally-controlled tumor protein-like NW_004955445 4686135 4689744 + 102023753 AGCD01039427 MODEL 9019389 protein-coding Tmem91 transmembrane protein 91 INVOLVED IN hematopoietic progenitor cell differentiation (ortholog) NW_004955555 322899 326450 + 102015991 AGCD01073024;GBDJ01319914;XM_005412342;XM_005412343;XM_005412344;XM_005412345;XM_005412346 XP_005412399;XP_005412400;XP_005412401;XP_005412402;XP_005412403 MODEL 10221259 ncrna LOC106148039 uncharacterized LOC106148039 NW_004955414 24762282 24779889 + 106148039 AGCD01015553;AGCD01015554;XR_001233157;XR_001233158 MODEL 9036846 protein-coding Oxsr1 oxidative stress responsive kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); ion channel regulator activity (ortholog); INVOLVED IN cell volume homeostasis (ortholog); cellular hyperosmotic response (ortholog); cellular response to chemokine (ortholog); ASSOCIATED WITH hypertension (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955427 25575655 25696356 + 102007138 AGCD01027545;AGCD01027546;AGCD01027547;AGCD01027548;AGCD01027549;GBDF01044803;XM_005386597;XM_013515206;XM_013515207 XP_005386654;XP_013370660;XP_013370661 MODEL 39131965 snorna SNORD116 Small nucleolar RNA SNORD116 8987453 ncrna LOC102004412 uncharacterized LOC102004412 NW_004955513 2245105 2262741 + 102004412 AGCD01066871;AGCD01066872;GBDF01085197;XR_001231734;XR_264457 MODEL 9033223 ncrna LOC102015298 uncharacterized LOC102015298 NW_004955410 30514436 30531199 - 102015298 AGCD01011308;AGCD01011309;GBDK01243564;XR_259890 MODEL 8824931 ncrna LOC102020517 uncharacterized LOC102020517 NW_004955403 47004641 47045570 + 102020517 AGCD01002873;AGCD01002874;GBDJ01189358;XR_001233928;XR_001233929;XR_001233930 MODEL 8902132 protein-coding Pfkfb3 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 ENCODES a protein that exhibits 6-phosphofructo-2-kinase activity (ortholog); INVOLVED IN apoptotic process (ortholog); fructose 2,6-bisphosphate metabolic process (ortholog); glial cell differentiation (ortholog); PARTICIPATES IN glycolysis pathway; hypoxia inducible factor pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); Arsenic Poisoning (ortholog); extrinsic cardiomyopathy (ortholog); FOUND IN 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase complex (ortholog); nucleoplasm (ortholog) NW_004955421 22762290 22868677 + 102003351 AGCD01022150;AGCD01022151;AGCD01022152;AGCD01022153;AGCD01022154;AGCD01022155;AGCD01022156;AGCD01022157;AGCD01022158;AGCD01022159;GBDF01126277;XM_005383866;XM_013513716 XP_005383923;XP_013369170 MODEL 8893335 protein-coding LOC102024046 trace amine-associated receptor 3-like NW_004955436 13181451 13182480 - 102024046 AGCD01033855;XM_013516587 XP_013372041 MODEL 8843523 protein-coding LOC102025115 heat shock factor protein 3-like NW_004955475 5498275 5555299 - 102025115 AGCD01054919;AGCD01054920;AGCD01054921;GBDF01165225;XM_013502808 XP_013358262 MODEL 8835106 protein-coding LOC102003033 HRAS-like suppressor 3 NW_004955422 21415634 21440465 + 102003033 AGCD01023116;GBDK01181579;XM_005384673;XM_013514096;XM_013514097 XP_005384730;XP_013369550;XP_013369551 MODEL 10134215 ncrna LOC106146944 uncharacterized LOC106146944 NW_004955506 5606682 5611404 - 106146944 AGCD01065374;GBCE01040867;XR_001231594;XR_001231595 MODEL 8823994 protein-coding LOC102008803 vomeronasal type-1 receptor 4-like NW_004955603 30312 31232 - 102008803 AGCD01076804;XM_005414841 XP_005414898 MODEL 8865643 protein-coding LOC102011918 extensin-like NW_004955559 469599 475119 + 102011918 AGCD01073586;AGCD01073587;GBDF01008163;XM_005412762;XM_005412763;XM_013508926;XR_001232336 XP_005412819;XP_005412820;XP_013364380 MODEL 8962398 protein-coding Wrn WRN RecQ like helicase ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); 3'-5' exonuclease activity (ortholog); 3'-flap-structured DNA binding (ortholog); INVOLVED IN base-excision repair (ortholog); cellular response to gamma radiation (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH breast cancer (ortholog); coronary artery disease (ortholog); diffuse scleroderma (ortholog); FOUND IN centrosome (ortholog); chromosome (ortholog); chromosome, telomeric region (ortholog) NW_004955463 7495243 7633532 + 102030614 AGCD01049734;AGCD01049735;AGCD01049736;AGCD01049737;AGCD01049738;AGCD01049739;AGCD01049740;AGCD01049741;GBDF01144959;XM_005398387;XM_005398388;XM_005398389;XM_005398390;XM_013521530 XP_005398444;XP_005398445;XP_005398446;XP_005398447;XP_013376984 MODEL 10281984 ncrna LOC106150052 uncharacterized LOC106150052 NW_004955462 8680506 8687963 + 106150052 AGCD01049324;GBCE01042961;XR_001236618 MODEL 9052365 protein-coding LOC102026887 melanoma-associated antigen 4-like NW_004955498 4903112 4915058 - 102026887 AGCD01063030;GBDF01022966;XM_005406412 XP_005406469 MODEL 8761008 ncrna LOC102028221 uncharacterized LOC102028221 NW_004955517 5211033 5212985 - 102028221 AGCD01067708;XR_264558 MODEL 10151702 ncrna LOC106149235 uncharacterized LOC106149235 NW_004955441 13547103 13570486 - 106149235 AGCD01037154;GBBH01196398;XR_001235285;XR_001235286 MODEL 10181451 protein-coding LOC106146390 translation initiation factor IF-2-like NW_004955476 8881557 8882072 - 106146390 AGCD01055375;GBDF01144740;GBDF01238868;XM_013503008 XP_013358462 MODEL 8835268 protein-coding LOC102009161 lupus La protein-like NW_004955412 27605630 27607235 - 102009161 AGCD01013242;GBBH01116715;GBCC01021705;XM_005378521 XP_005378578 MODEL 9059870 ncrna LOC102030002 uncharacterized LOC102030002 NW_004955544 463773 464538 + 102030002 AGCD01071705;GBDF01001543;XR_264865 MODEL 10342814 protein-coding LOC106146254 olfactory receptor 2G3-like NW_004955581 657465 658412 - 106146254 AGCD01075685;XM_013509727 XP_013365181 MODEL 8794146 protein-coding Pnck pregnancy up-regulated nonubiquitous CaM kinase ENCODES a protein that exhibits calcium/calmodulin-dependent protein kinase activity (ortholog) NW_004955580 401411 406663 - 102014842 AGCD01075603;AGCD01075604;GBBH01054212;XM_005414137;XM_005414138;XM_013509673;XM_013509675 XP_005414194;XP_005414195;XP_013365127;XP_013365129 MODEL 8961227 protein-coding Ncor2 nuclear receptor corepressor 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); enzyme activator activity (ortholog); INVOLVED IN cell proliferation in forebrain (ortholog); cerebellum development (ortholog); epidermis development (ortholog); PARTICIPATES IN aldosterone signaling pathway; altered androgen signaling pathway; androgen signaling pathway; ASSOCIATED WITH breast cancer (ortholog); endometrial carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN chromatin (ortholog); histone deacetylase complex (ortholog); nuclear body (ortholog) NW_004955482 4927482 5031848 + 102010586 AGCD01057317;AGCD01057318;GBDJ01001939;XM_005403008;XM_013503630;XM_013503631;XM_013503632;XM_013503633;XM_013503634;XM_013503635;XM_013503636;XM_013503637;XM_013503638 XP_005403065;XP_013359084;XP_013359085;XP_013359086;XP_013359087;XP_013359088;XP_013359089;XP_013359090;XP_013359091;XP_013359092 MODEL 9000697 protein-coding LOC102006174 lipopolysaccharide-binding protein-like NW_004955445 18292277 18311475 - 102006174 AGCD01039901;AGCD01039902;GBDK01402655;XM_005392587 XP_005392644 MODEL 9043808 ncrna LOC102009955 uncharacterized LOC102009955 NW_004955490 5851097 5894388 + 102009955 AGCD01060211;GBDK01242204;XR_001231206;XR_001231207;XR_264028 MODEL 8784604 pseudo LOC102021324 60S ribosomal protein L23a pseudogene NW_004955411 28661333 28675617 + 102021324 AGCD01012223;AGCD01012224;AGCD01012225 MODEL 8945508 protein-coding Pigk phosphatidylinositol glycan anchor biosynthesis class K ENCODES a protein that exhibits GPI-anchor transamidase activity (ortholog); INVOLVED IN attachment of GPI anchor to protein (ortholog); GPI anchored protein biosynthesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorder with Hypotonia and Cerebellar Atrophy, with or without Seizures (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); GPI-anchor transamidase complex (ortholog) NW_004955423 15864320 15970451 + 102029412 AGCD01023817;AGCD01023818;AGCD01023819;AGCD01023820;AGCD01023821;AGCD01023822;GBBH01186058;GBDJ01236342;XM_013514553 XP_013370007 MODEL 8799841 protein-coding Idh3a isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha ENCODES a protein that exhibits isocitrate dehydrogenase (NAD+) activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN tricarboxylic acid cycle (ortholog); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; mitochondrial complex II deficiency pathway; ASSOCIATED WITH fundus dystrophy (ortholog); osteoarthritis (ortholog); retinitis pigmentosa (ortholog); FOUND IN isocitrate dehydrogenase complex (NAD+) (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955450 685905 703593 + 102007832 AGCD01042342;AGCD01042343;GBDF01081591;XM_005393440 XP_005393497 MODEL 10385969 ncrna LOC106146523 uncharacterized LOC106146523 NW_004955482 9248744 9251835 - 106146523 AGCD01057564;GBDF01160178;XR_001230996;XR_001230997 MODEL 8897100 protein-coding Tekt5 tektin 5 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955442 7740611 7778130 + 102008462 AGCD01037628;GBDF01008212;XM_005391187 XP_005391244 MODEL 10097580 ncrna LOC106146663 uncharacterized LOC106146663 NW_004955490 924 6953 - 106146663 AGCD01060045;GBDK01412511;XR_001231205 MODEL 8736074 pseudo LOC102027577 U3 small nucleolar RNA-associated protein 6 homolog pseudogene NW_004955552 2274587 2276597 - 102027577 AGCD01072808 MODEL 8747254 pseudo LOC102025116 phosphoglycerate kinase 2-like NW_004955416 1358051 1359301 - 102025116 AGCD01016834 MODEL 8879177 protein-coding Spaca9 sperm acrosome associated 9 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN axoneme assembly (ortholog); flagellated sperm motility (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome classic type 1 (ortholog); FOUND IN acrosomal vesicle (ortholog); axonemal microtubule (ortholog); axonemal microtubule doublet inner sheath (ortholog) NW_004955513 2184878 2196367 + 102028322 AGCD01066870;GBDF01222876;XM_005408384;XM_005408385;XM_005408386;XM_005408387;XM_005408388;XM_005408389 XP_005408441;XP_005408442;XP_005408443;XP_005408444;XP_005408445;XP_005408446 MODEL 9019145 protein-coding LOC102026532 uncharacterized LOC102026532 NW_004955486 8521777 8525182 - 102026532 AGCD01059151;XM_005404320 XP_005404377 MODEL 8810527 pseudo LOC102012305 60S ribosomal protein L26-like 1 pseudogene NW_004955468 11168153 11174462 - 102012305 AGCD01052119 MODEL 9018986 protein-coding Epyc epiphycan INVOLVED IN articular cartilage development (ortholog); bone development (ortholog); sensory perception of sound (ortholog); FOUND IN extracellular matrix (ortholog) NW_004955405 28182890 28212864 - 102018797 AGCD01005233;GBCE01000127;XM_005374447 XP_005374504 MODEL 8865107 pseudo LOC102017997 RING finger and CHY zinc finger domain-containing protein 1 pseudogene NW_004955495 7385816 7387491 - 102017997 AGCD01062132 MODEL 8903724 pseudo LOC102029290 solute carrier family 7 member 13-like NW_004955417 3016876 3033665 + 102029290 AGCD01017901 MODEL 8941104 pseudo LOC102023754 transmembrane protein 87B pseudogene NW_004955570 468945 469943 - 102023754 AGCD01074727 MODEL 8799462 protein-coding Wrnip1 WRN helicase interacting protein 1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); identical protein binding (ortholog); INVOLVED IN DNA synthesis involved in DNA repair (ortholog); regulation of DNA-templated DNA replication initiation (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955465 10574601 10594570 - 102026302 AGCD01050510;AGCD01050511;GBBH01090406;GBCQ01093710;XM_005398930 XP_005398987 MODEL 8910507 protein-coding Sash3 SAM and SH3 domain containing 3 INVOLVED IN homeostasis of number of cells within a tissue (ortholog); positive regulation of adaptive immune response (ortholog); positive regulation of B cell proliferation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); immunodeficiency 102 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955473 5224635 5237066 - 102012856 AGCD01053973;GBBH01090094;XM_005401258 XP_005401315 MODEL 8978372 protein-coding Sh3tc1 SH3 domain and tetratricopeptide repeats 1 ASSOCIATED WITH Colorectal Neoplasms (ortholog) NW_004955514 2752499 2786067 - 102010399 AGCD01067087;AGCD01067088;GBCE01069521;XM_005408779;XM_013506767;XM_013506768;XM_013506769;XM_013506770 XP_005408836;XP_013362221;XP_013362222;XP_013362223;XP_013362224 MODEL 9032520 pseudo LOC102018336 40S ribosomal protein SA pseudogene NW_004955440 15872537 15873432 + 102018336 AGCD01036502 MODEL 8863839 ncrna LOC102007263 uncharacterized LOC102007263 NW_004955432 19290564 19338278 + 102007263 AGCD01031177;AGCD01031178;GBBH01148299;XR_001234678;XR_261536 MODEL 8896208 trna Trnav-cac transfer RNA valine (anticodon CAC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978801 AGCD01050589;AGCD01052199;AGCD01057606;AGCD01061910;AGCD01069830;AGCD01076044;AGCD01080385 MODEL 10132128 pseudo LOC106146255 DNA endonuclease RBBP8 pseudogene NW_004955405 5022538 5023461 - 106146255 AGCD01004673 MODEL 8835980 protein-coding Pfkfb4 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 ENCODES a protein that exhibits 6-phosphofructo-2-kinase activity (ortholog); fructose-2,6-bisphosphate 2-phosphatase activity (ortholog); PARTICIPATES IN glycolysis pathway; FOUND IN 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase complex (ortholog) NW_004955532 606597 644238 - 102005299 AGCD01070140;AGCD01070141;AGCD01070142;GBBH01011275;XM_013507571 XP_013363025 MODEL 8748365 pseudo LOC102019537 V-type proton ATPase subunit E 1-like NW_004955545 693641 698066 + 102019537 AGCD01071813 MODEL 8902038 pseudo LOC102025473 chromobox protein homolog 3 pseudogene NW_004955421 6090733 6091473 - 102025473 AGCD01021730;XM_005383914 MODEL 8717278 pseudo LOC102011922 protein kinase C iota type pseudogene NW_004955446 1525926 1528371 + 102011922 AGCD01039967;XM_005392599 MODEL 10204683 ncrna LOC106150053 uncharacterized LOC106150053 NW_004955462 4487429 4569813 + 106150053 AGCD01049228;AGCD01049229;AGCD01049230;AGCD01049231;AGCD01049232;AGCD01049233;XR_001236624 MODEL 10377626 pseudo LOC106146664 nuclear receptor coactivator 3 pseudogene NW_004955407 35428646 35429149 - 106146664 AGCD01007742 MODEL 8785636 protein-coding Sprn shadow of prion protein ENCODES a protein that exhibits nucleic acid binding (ortholog); INVOLVED IN protein import into nucleus (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog); nucleolus (ortholog) NW_004955477 11058388 11062786 - 102007336 AGCD01055714;GBDF01232323;XM_005402074;XM_005402075;XR_001230816;XR_001230817 XP_005402131;XP_005402132 MODEL 8728628 ncrna LOC102025118 uncharacterized LOC102025118 NW_004955416 9380213 9382086 - 102025118 AGCD01017086;GBDK01117927;XR_001233292;XR_001233293 MODEL 39131964 snorna SNORD116 Small nucleolar RNA SNORD116 10363240 pseudo LOC106148040 LYR motif-containing protein 1 pseudogene NW_004955414 28854439 28854865 - 106148040 AGCD01015689 MODEL 39133531 snrna U4 U4 spliceosomal RNA 8931952 protein-coding Slc25a48 solute carrier family 25 member 48 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955408 30775521 30940335 + 102010675 AGCD01008815;AGCD01008816;AGCD01008817;AGCD01008818;GBDF01214459;XM_005376479;XM_005376480;XM_005376481;XM_005376482;XM_005376483;XM_005376484;XM_013506729;XM_013506744 XP_005376536;XP_005376537;XP_005376538;XP_005376539;XP_005376540;XP_005376541;XP_013362183;XP_013362198 MODEL 10172533 ncrna LOC106149236 uncharacterized LOC106149236 NW_004955441 14795883 14798941 - 106149236 AGCD01037222;GBDK01344176;XR_001235287;XR_001235288 MODEL 8699530 pseudo LOC102003375 mortality factor 4-like protein 1 pseudogene NW_004955532 142317 143401 + 102003375 AGCD01070101 MODEL 8756688 pseudo LOC102003038 splicing factor 3B subunit 4 pseudogene NW_004955424 14377491 14379086 - 102003038 AGCD01024652 MODEL 8753426 pseudo LOC102009960 guanylate-binding protein 6-like NW_004955423 4772863 4789903 + 102009960 AGCD01023545 MODEL 8922155 pseudo LOC102005812 G kinase-anchoring protein 1 pseudogene NW_004955488 1169951 1171056 + 102005812 AGCD01059491 MODEL 8857490 protein-coding LOC102006178 UDP-glucuronosyltransferase 2B17-like NW_004955447 3671283 3776024 + 102006178 AGCD01040635;AGCD01040636;AGCD01040637;AGCD01040638;AGCD01040639;AGCD01040640;AGCD01040641;AGCD01040642;AGCD01040643;AGCD01040644;AGCD01040645;AGCD01040646;AGCD01040647;AGCD01040648;AGCD01040649;AGCD01040650;AGCD01040651;AGCD01040652;AGCD01040653;AGCD01040654;AGCD01040655;AGCD01040656;AGCD01040657;AGCD01040658;AGCD01040659;AGCD01040660;GBCQ01008307;XM_005392814;XM_005392815;XM_013518531;XM_013518532 XP_005392871;XP_005392872;XP_013373985;XP_013373986 MODEL 9026532 protein-coding Pigl phosphatidylinositol glycan anchor biosynthesis class L ENCODES a protein that exhibits N-acetylglucosaminylphosphatidylinositol deacetylase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH CHIME syndrome (ortholog); genetic disease (ortholog); hyperphosphatasia with impaired intellectual development syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955467 1566494 1645158 + 102015493 AGCD01051267;AGCD01051268;AGCD01051269;AGCD01051270;AGCD01051271;GBDF01305356;XM_013522032 XP_013377486 MODEL 8805289 protein-coding Lamc1 laminin subunit gamma 1 ENCODES a protein that exhibits extracellular matrix structural constituent (ortholog); glycosphingolipid binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN cell adhesion (ortholog); cell migration (ortholog); chromatin organization (ortholog); ASSOCIATED WITH aortic disease (ortholog); COVID-19 (ortholog); Gliosis (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); laminin-111 trimer (ortholog) NW_004955406 21863836 21990161 + 102021624 AGCD01006149;AGCD01006150;GBBH01077450;GBCB01039166;XM_005375017 XP_005375074 MODEL 9048262 protein-coding Klhl30 kelch like family member 30 NW_004955542 2418399 2427571 - 102027570 AGCD01071522;GBDI01064601;XM_005411196 XP_005411253 MODEL 8705029 protein-coding Tektip1 tektin bundle interacting protein 1 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955495 5504867 5507412 + 102005485 AGCD01062009;GBDI01020557;XM_005405875;XM_005405876 XP_005405932;XP_005405933 MODEL 9041469 pseudo LOC102026535 40S ribosomal protein S3a-like NW_004955492 8704478 8705165 - 102026535 AGCD01060824 MODEL 8882082 ncrna LOC102015304 uncharacterized LOC102015304 NW_004955468 9262127 9356952 - 102015304 AGCD01052042;AGCD01052043;AGCD01052044;AGCD01052045;AGCD01052046;GBDF01252923;XR_001236884;XR_001236885 MODEL 8813799 pseudo LOC102020519 histidine triad nucleotide-binding protein 2, mitochondrial pseudogene NW_004955403 42797974 42798458 + 102020519 AGCD01002761 MODEL 8894665 pseudo LOC102009162 Krueppel-like factor 3 pseudogene NW_004955412 32434354 32435058 - 102009162 AGCD01013355;XR_260036 MODEL 10240051 ncrna LOC106146391 uncharacterized LOC106146391 NW_004955476 4386873 4392616 - 106146391 AGCD01055280;GBDI01309138;XR_001230811 MODEL 8960233 protein-coding LOC102024047 uncharacterized LOC102024047 NW_004955436 1581428 1589015 - 102024047 AGCD01033580;AGCD01033581;GBDF01020972;XM_013516580 XP_013372034 MODEL 10097040 ncrna LOC106146945 uncharacterized LOC106146945 NW_004955506 4102468 4103688 - 106146945 AGCD01065325;GBCE01013805;XR_001231596 MODEL 8827554 protein-coding Pnisr PNN interacting serine and arginine rich protein FOUND IN nuclear speck (ortholog) NW_004955411 25270569 25297571 - 102023787 AGCD01012151;GBCB01022118;XM_005377803;XM_005377804;XM_005377805;XM_013510778;XM_013510779;XM_013510780;XM_013510781;XM_013510782 XP_005377860;XP_005377861;XP_005377862;XP_013366232;XP_013366233;XP_013366234;XP_013366235;XP_013366236 MODEL 8723035 ncrna LOC102025119 uncharacterized LOC102025119 NW_004955416 31751765 31788345 + 102025119 AGCD01017770;AGCD01017771;AGCD01017772;AGCD01017773;GBDF01288200;XR_001233286;XR_260453;XR_260454;XR_260455;XR_260456 MODEL 8878409 protein-coding Best3 bestrophin 3 ENCODES a protein that exhibits chloride channel activity (ortholog); intracellularly calcium-gated chloride channel activity (ortholog); ligand-gated monoatomic anion channel activity (ortholog); INVOLVED IN inorganic anion transport (ortholog); negative regulation of monoatomic ion transport (ortholog); ASSOCIATED WITH aortic dissection (ortholog); atrial fibrillation (ortholog); FOUND IN plasma membrane (ortholog) NW_004955405 9957595 10031193 - 102026284 AGCD01004801;AGCD01004802;GBDI01011038;XM_013517529;XM_013517531 XP_013372983;XP_013372985 MODEL 9066826 protein-coding Sh3tc2 SH3 domain and tetratricopeptide repeats 2 INVOLVED IN myelination in peripheral nervous system (ortholog); peripheral nervous system myelin maintenance (ortholog); regulation of endocytic recycling (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); autosomal dominant distal hereditary motor neuronopathy 14 (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog); recycling endosome (ortholog) NW_004955415 5286475 5354880 + 102030301 AGCD01015992;AGCD01015993;AGCD01015994;GBDF01192243;XM_005380627;XM_005380628;XM_005380629;XM_005380630;XM_005380631;XM_013512395;XM_013512396;XM_013512397;XR_001233271 XP_005380684;XP_005380685;XP_005380686;XP_005380687;XP_005380688;XP_013367849;XP_013367850;XP_013367851 MODEL 8895333 pseudo LOC102008806 28S ribosomal protein S36, mitochondrial pseudogene NW_004955451 2025250 2026677 + 102008806 AGCD01043004;XM_005393966 MODEL 9003340 protein-coding LOC102021325 serpin B9-like NW_004955465 10360723 10368587 - 102021325 AGCD01050507;XM_005398914 XP_005398971 MODEL 15036841 trna Trnav-gac transfer RNA valine (anticodon GAC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978799 10157363 ncrna LOC106146257 uncharacterized LOC106146257 NW_004955520 2048179 2057021 + 106146257 AGCD01068075;AGCD01068076;GBDK01220273;XR_264591 MODEL 8969123 ncrna LOC102026888 uncharacterized LOC102026888 NW_004955425 16767926 16840132 + 102026888 AGCD01025620;AGCD01025621;AGCD01025622;XR_001234302 MODEL 8992610 pseudo LOC102018000 DCN1-like protein 4 NW_004955424 950236 952921 + 102018000 AGCD01024225 MODEL 8881797 pseudo LOC102004416 RE1-silencing transcription factor-like NW_004955515 4007565 4012720 + 102004416 AGCD01067313 MODEL 9010559 ncrna LOC102019538 uncharacterized LOC102019538 NW_004955441 8245514 8252301 - 102019538 AGCD01036978;GBDF01234852;XR_262058;XR_262059 MODEL 8827231 pseudo LOC102012309 RAC-gamma serine/threonine-protein kinase-like NW_004955414 21907536 21908908 - 102012309 AGCD01015437 MODEL 8876848 protein-coding Oxtr oxytocin receptor ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); oxytocin receptor activity (ortholog); peptide hormone binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); digestive tract development (ortholog); eating behavior (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphai family; G protein mediated signaling pathway via Galphaq family; oxytocin signaling pathway; ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); anxiety disorder (ortholog); FOUND IN adherens junction (ortholog); apical plasma membrane (ortholog); microvillus (ortholog) NW_004955561 340387 354499 - 102026917 AGCD01073821;GBDJ01298368;XM_013509070;XM_013509071;XM_013509072;XM_013509073 XP_013364524;XP_013364525;XP_013364526;XP_013364527 MODEL 9029676 protein-coding Pfkl phosphofructokinase, liver type ENCODES a protein that exhibits 6-phosphofructokinase activity (ortholog); ATP binding (ortholog); fructose binding (ortholog); INVOLVED IN fructose 1,6-bisphosphate metabolic process (ortholog); fructose 6-phosphate metabolic process (ortholog); glycolytic process (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; glycolysis pathway; ASSOCIATED WITH hemolytic anemia (ortholog); FOUND IN 6-phosphofructokinase complex (ortholog); cytosol (ortholog) NW_004955407 41131022 41145392 - 102026944 AGCD01007856;AGCD01007857;AGCD01007858;GBBH01064619;GBDK01135116;XM_013505359 XP_013360813 MODEL 8899522 protein-coding Eqtn equatorin INVOLVED IN acrosomal vesicle exocytosis (ortholog); endocytosis (ortholog); fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); FOUND IN acrosomal membrane (ortholog); cytoplasm (ortholog); early endosome (ortholog) NW_004955472 7554243 7563620 + 102024109 AGCD01053624;GBDF01050220;XM_005401145 XP_005401202 MODEL 8758203 protein-coding Pnkd PNKD metallo-beta-lactamase domain containing INVOLVED IN negative regulation of neurotransmitter secretion (ortholog); neuromuscular process controlling posture (ortholog); regulation of dopamine metabolic process (ortholog); ASSOCIATED WITH cerebrotendinous xanthomatosis (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955453 15030436 15104084 - 102012398 AGCD01044881;AGCD01044882;AGCD01044883;AGCD01044884;AGCD01044885;GBDI01171046;XM_005395654;XM_005395655;XM_005395656;XM_013519933 XP_005395711;XP_005395712;XP_005395713;XP_013375387 MODEL 8794673 protein-coding LOC102011927 uncharacterized LOC102011927 NW_004955450 3259515 3262466 + 102011927 AGCD01042426;GBDF01042694;XM_005393550 XP_005393607 MODEL 10081585 protein-coding Sprr4 small proline rich protein 4 FOUND IN cytosol (ortholog) NW_004955592 424261 426415 - 106147604 AGCD01076313;XM_013509983 XP_013365437 MODEL 9041222 protein-coding Wsb1 WD repeat and SOCS box containing 1 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN protein aggregate center assembly (ortholog); protein K27-linked ubiquitination (ortholog); FOUND IN cytoplasm (ortholog); Lewy body (ortholog) NW_004955481 6014218 6034850 - 102015405 AGCD01057006;GBDJ01022597;XM_005402791;XM_013503496;XM_013503497 XP_005402848;XP_013358950;XP_013358951 MODEL 39133532 snrna U4 U4 spliceosomal RNA 39131963 snorna SNORD116 Small nucleolar RNA SNORD116 8966265 protein-coding Sass6 SAS-6 centriolar assembly protein INVOLVED IN centriole replication (ortholog); centrosome duplication (ortholog); positive regulation of centriole replication (ortholog); ASSOCIATED WITH genetic disease (ortholog); primary autosomal recessive microcephaly 14 (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955435 4832284 4876077 - 102022223 AGCD01032855;AGCD01032856;AGCD01032857;AGCD01032858;AGCD01032859;AGCD01032860;GBDI01383796;GBDK01218416;XM_005389097 XP_005389154 MODEL 8998908 protein-coding Idh3b isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta ENCODES a protein that exhibits enzyme activator activity (ortholog); INVOLVED IN tricarboxylic acid cycle (ortholog); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; mitochondrial complex II deficiency pathway; ASSOCIATED WITH Disease Progression (ortholog); fundus dystrophy (ortholog); optic atrophy (ortholog); FOUND IN isocitrate dehydrogenase complex (NAD+) (ortholog); mitochondrion (ortholog) NW_004955415 13642804 13649023 - 102016262 AGCD01016263;GBCB01001615;XM_013512289;XM_013512290;XR_001233226;XR_001233227 XP_013367743;XP_013367744 MODEL 8792197 pseudo LOC102027578 periphilin-1 pseudogene NW_004955557 2131340 2133255 - 102027578 AGCD01073325 MODEL 8886462 protein-coding Tmem92 transmembrane protein 92 ASSOCIATED WITH Developmental Disabilities (ortholog); hereditary breast ovarian cancer syndrome (ortholog) NW_004955451 11402598 11407002 - 102011724 AGCD01043354;GBDK01195399;XM_013519099;XM_013519100;XM_013519101;XM_013519102 XP_013374553;XP_013374554;XP_013374555;XP_013374556 MODEL 8737975 protein-coding LOC102007264 ATP-binding cassette sub-family G member 2-like NW_004955433 399182 486055 - 102007264 AGCD01031317;AGCD01031318;AGCD01031319;AGCD01031320;AGCD01031321;AGCD01031322;AGCD01031323;AGCD01031324;GBDJ01086753;XM_005388159 XP_005388216 MODEL 8874391 ncrna LOC102005816 uncharacterized LOC102005816 NW_004955423 3544871 3634123 + 102005816 AGCD01023515;AGCD01023516;GBDF01047727;XR_260951 MODEL 8894302 ncrna LOC102030003 uncharacterized LOC102030003 NW_004955440 15726430 15747000 - 102030003 AGCD01036496;AGCD01036497;GBDF01016979;XR_262026 MODEL 8807027 pseudo LOC102025479 calcium-activated chloride channel regulator 4-like NW_004955423 7539149 7564161 - 102025479 AGCD01023607 MODEL 10389251 ncrna LOC106150054 uncharacterized LOC106150054 NW_004955462 5847653 5852321 - 106150054 AGCD01049263;XR_001236625 MODEL 8945504 ncrna LOC102029291 uncharacterized LOC102029291 NW_004955417 30827553 30831897 - 102029291 AGCD01018630;GBDF01305378;XR_260520 MODEL 8870709 protein-coding LOC102023759 chromosome unknown open reading frame, human C6orf15 NW_004955583 955027 956397 - 102023759 AGCD01075875;GBDI01322667;XM_005414329;XM_013509835;XM_013509836 XP_005414386;XP_013365289;XP_013365290 MODEL 9032967 protein-coding LOC102009166 TRIO and F-actin-binding protein-like NW_004955413 24091962 24110422 + 102009166 AGCD01014347;AGCD01014348;XM_013511302 XP_013366756 MODEL 10163415 ncrna LOC106149237 uncharacterized LOC106149237 NW_004955441 10156137 10161739 + 106149237 AGCD01037076;GBDJ01049785;XR_001235289 MODEL 8836593 pseudo LOC102028223 biorientation of chromosomes in cell division protein 1 pseudogene NW_004955518 2470348 2470906 - 102028223 AGCD01067778 MODEL 10078113 ncrna LOC106146392 uncharacterized LOC106146392 NW_004955476 6471868 6478575 - 106146392 AGCD01055332;XR_001230812 MODEL 10251315 ncrna LOC106146946 uncharacterized LOC106146946 NW_004955506 560908 566830 + 106146946 AGCD01065232;XR_001231597 MODEL 8735834 protein-coding Spacdr sperm acrosome developmental regulator INVOLVED IN spermatid development (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955410 31509985 31513231 - 102019038 AGCD01011327;GBDF01001669;XM_005377495;XM_005377496 XP_005377552;XP_005377553 MODEL 39131411 protein-coding PIGL phosphatidylinositol glycan anchor biosynthesis class L 8918901 pseudo LOC102008810 dnaJ homolog subfamily B member 6-like NW_004955403 27722644 27770774 - 102008810 AGCD01002323;AGCD01002324;AGCD01002325;AGCD01002326 MODEL 8869879 protein-coding Lamc2 laminin subunit gamma 2 ENCODES a protein that exhibits heparin binding (ortholog); INVOLVED IN positive regulation of cell migration (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); Disease Progression (ortholog); genetic disease (ortholog); FOUND IN basement membrane (ortholog); cell cortex (ortholog); extracellular region (ortholog) NW_004955406 22020330 22074271 + 102022159 AGCD01006150;AGCD01006151;GBDI01105477;XM_005375020 XP_005375077 MODEL 8876170 trna Trnav-uac transfer RNA valine (anticodon UAC) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe NW_004955586;NW_004955418;NW_004955511;NW_004955511 762475;25922316;4044144;4043788 762547;25922388;4044216;4043860 +;-;-;- 101978800 AGCD01019379;AGCD01066488;AGCD01076044 MODEL 10255975 pseudo LOC106146665 60S ribosomal protein L31 pseudogene NW_004955491 340907 346704 - 106146665 AGCD01060331 MODEL 8821769 protein-coding LOC102005821 transcription elongation factor A protein-like 3 NW_004955503 8192530 8194504 + 102005821 AGCD01064812;GBDI01313611;XM_005406978 XP_005407035 MODEL 8722851 ncrna LOC102018350 uncharacterized LOC102018350 NW_004955402 45846571 45854310 + 102018350 AGCD01001142;GBCQ01008628;XR_259093 MODEL 8743427 pseudo LOC102004419 acyl-protein thioesterase 1 pseudogene NW_004955535 3723222 3723807 + 102004419 AGCD01070706;XM_005410498 MODEL 10286432 ncrna LOC106148041 uncharacterized LOC106148041 NW_004955414 9596025 9621207 + 106148041 AGCD01015029;XR_001233161 MODEL 8753559 pseudo LOC102015306 transcription initiation factor IIA subunit 2 pseudogene NW_004955413 33570657 33570987 - 102015306 AGCD01014679 MODEL 9045988 protein-coding LOC102012311 olfactory receptor 480-like NW_004955414 23617985 23618923 - 102012311 AGCD01015506;XM_005380205 XP_005380262 MODEL 8964548 pseudo LOC102003378 S-phase kinase-associated protein 1 pseudogene NW_004955537 3218460 3219427 - 102003378 AGCD01070953 MODEL 10119375 ncrna LOC106146524 uncharacterized LOC106146524 NW_004955482 2584838 2585506 - 106146524 AGCD01057252;XR_001230998 MODEL 8965650 ncrna LOC102024049 uncharacterized LOC102024049 NW_004955537 9950 26774 - 102024049 AGCD01070845;AGCD01070846;AGCD01070847;GBDF01112305;XR_264768 MODEL 8970969 protein-coding P2rx1 purinergic receptor P2X 1 ENCODES a protein that exhibits ATP binding (ortholog); extracellularly ATP-gated monoatomic cation channel activity (ortholog); identical protein binding (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); insemination (ortholog); monoatomic cation transmembrane transport (ortholog); ASSOCIATED WITH toxic encephalopathy (ortholog); FOUND IN external side of plasma membrane (ortholog); glutamatergic synapse (ortholog); membrane raft (ortholog) NW_004955467 12955663 12971547 + 102017000 AGCD01051661;GBDK01383562;XM_005399703 XP_005399760 MODEL 8809166 protein-coding Slc25a5 solute carrier family 25 member 5 ENCODES a protein that exhibits adenine nucleotide transmembrane transporter activity (ortholog); ATP:ADP antiporter activity (ortholog); oxidative phosphorylation uncoupler activity (ortholog); INVOLVED IN adaptive thermogenesis (ortholog); adenine nucleotide transport (ortholog); B cell differentiation (ortholog); FOUND IN membrane (ortholog); membrane raft (ortholog); mitochondrial inner membrane (ortholog) NW_004955534 497518 500309 - 102012240 AGCD01070456;GBBH01091214;XM_005410445 XP_005410502 MODEL 8740447 protein-coding Pigm phosphatidylinositol glycan anchor biosynthesis class M ENCODES a protein that exhibits dol-P-Man:GlcN-acyl-PI alpha-1,4-mannosyltransferase activity (ortholog); mannosyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Glycosylphosphatidylinositol Biosynthesis Defect 1 (ortholog); Venous Thrombosis (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-mannosyltransferase I complex (ortholog) NW_004955468 11817647 11820456 - 102012944 AGCD01052139;GBDK01168852;XM_005400190 XP_005400247 MODEL 8846914 protein-coding LOC102003039 zinc finger protein 14-like NW_004955499 300856 321376 + 102003039 AGCD01063215;AGCD01063216;AGCD01063217;AGCD01063218;GBDI01054273;XM_013505563;XM_013505564;XM_013505565;XM_013505566 XP_013361017;XP_013361018;XP_013361019;XP_013361020 MODEL 8965483 protein-coding Pnkp polynucleotide kinase 3'-phosphatase ENCODES a protein that exhibits ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity (ortholog); polynucleotide 3'-phosphatase activity (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); double-strand break repair via nonhomologous end joining (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH ataxia-oculomotor apraxia 4 (ortholog); Charcot-Marie-Tooth disease type 2B2 (ortholog); developmental and epileptic encephalopathy 12 (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955559 1064924 1070120 + 102018779 AGCD01073627;AGCD01073628;GBCB01005335;GBCQ01040513;XM_013508947 XP_013364401 MODEL 8775375 protein-coding Eral1 Era like 12S mitochondrial rRNA chaperone 1 ENCODES a protein that exhibits ribosomal small subunit binding (ortholog); RNA folding chaperone (ortholog); rRNA binding (ortholog); INVOLVED IN mitochondrial small ribosomal subunit assembly (ortholog); ribosomal small subunit assembly (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Hearing Loss (ortholog); Perrault syndrome (ortholog); FOUND IN cytosol (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955481 4315139 4320983 - 102019803 AGCD01056933;AGCD01056934;GBCE01115661;XM_005402709;XM_013503383 XP_005402766;XP_013358837 MODEL 8933198 ncrna LOC102009168 uncharacterized LOC102009168 NW_004955471 210298 228033 - 102009168 AGCD01052952;GBDF01209473;XR_263509 MODEL 9053769 ncrna LOC102025121 uncharacterized LOC102025121 NW_004955418 20489068 20501173 + 102025121 AGCD01019228;GBDF01017286;XR_260574 MODEL 8911382 protein-coding Sat1 spermidine/spermine N1-acetyltransferase 1 ENCODES a protein that exhibits diamine N-acetyltransferase activity (ortholog); identical protein binding (ortholog); N-acetyltransferase activity (ortholog); INVOLVED IN angiogenesis (ortholog); polyamine biosynthetic process (ortholog); polyamine catabolic process (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; polyamine metabolic pathway; spermidine metabolic pathway; ASSOCIATED WITH allergic contact dermatitis (ortholog); anxiety disorder (ortholog); COVID-19 (ortholog) NW_004955509 4198876 4202103 + 102015032 AGCD01066057;AGCD01066058;AY533231;GBCE01002359;XM_005407833;XM_013506302 AAS59433;XP_005407890;XP_013361756 MODEL 8751739 protein-coding Best4 bestrophin 4 ENCODES a protein that exhibits bicarbonate channel activity (ortholog); chloride channel activity (ortholog); intracellularly calcium-gated chloride channel activity (ortholog) NW_004955464 13434429 13439108 + 102011635 AGCD01050277;AGCD01050278;GBDI01362790;XM_005398742 XP_005398799 MODEL 10222039 protein-coding Ncr3 natural cytotoxicity triggering receptor 3 ENCODES a protein that exhibits identical protein binding (ortholog); immune receptor activity (ortholog); INVOLVED IN immune response-activating cell surface receptor signaling pathway (ortholog); natural killer cell activation (ortholog); NK T cell activation (ortholog); ASSOCIATED WITH acquired immunodeficiency syndrome (ortholog); Chronic Hepatitis C (ortholog); COVID-19 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955437 130360 134751 - 106149106 AGCD01034102;AGCD01034103;AGCD01034104;GBBH01150590;GBCE01101721;XM_013516929 XP_013372383 MODEL 8744076 protein-coding Klhl31 kelch like family member 31 INVOLVED IN negative regulation of JNK cascade (ortholog); negative regulation of protein phosphorylation (ortholog); ASSOCIATED WITH centronuclear myopathy (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955411 2449241 2461779 + 102009362 AGCD01011509;AGCD01011510;GBCB01004346;XM_013510752;XM_013510753;XM_013510754 XP_013366206;XP_013366207;XP_013366208 MODEL 8856664 protein-coding Sh3yl1 SH3 and SYLF domain containing 1 ENCODES a protein that exhibits phosphatase binding (ortholog); phosphatidylinositol binding (ortholog); INVOLVED IN phosphatidylinositol biosynthetic process (ortholog); regulation of ruffle assembly (ortholog); FOUND IN ruffle membrane (ortholog) NW_004955487 258116 290377 - 102005047 AGCD01059215;AGCD01059216;GBCQ01039979;XM_005404334;XM_005404336;XM_013504378 XP_005404391;XP_005404393;XP_013359832 MODEL 8887604 pseudo LOC102026889 mortality factor 4-like protein 1 pseudogene NW_004955500 7419979 7422357 - 102026889 AGCD01063922;XR_264246 MODEL 8750983 pseudo LOC102007272 non-histone chromosomal protein HMG-17 pseudogene NW_004955528 2647383 2647654 - 102007272 AGCD01069588 MODEL 9006660 pseudo LOC102026539 40S ribosomal protein S15a pseudogene NW_004955422 27577120 27578169 + 102026539 AGCD01023327 MODEL 9017246 ncrna LOC102019539 uncharacterized LOC102019539 NW_004955442 5261971 5277187 - 102019539 AGCD01037555;GBDF01056125;XR_262115 MODEL 8738222 pseudo LOC102025481 transmembrane protein 126A pseudogene NW_004955424 22816236 22819055 + 102025481 AGCD01024989 MODEL 8801421 protein-coding LOC102021328 alpha-2-macroglobulin-like NW_004955413 5885352 5996030 - 102021328 AGCD01013695;AGCD01013696;AGCD01013697;GBDI01211358;XM_005378888;XM_013511450;XM_013511451;XM_013511453;XR_260065 XP_005378945;XP_013366904;XP_013366905;XP_013366907 MODEL 10338047 pseudo LOC106150055 septin-2 pseudogene NW_004955463 230221 230867 - 106150055 AGCD01049478 MODEL 10096406 pseudo LOC106146666 ERI1 exoribonuclease 3-like NW_004955491 5703685 5706066 - 106146666 AGCD01060499 MODEL 8727183 protein-coding LOC102029293 olfactory receptor 139-like NW_004955481 63565 64511 - 102029293 AGCD01056778;XM_013503346 XP_013358800 MODEL 8974923 protein-coding Wsb2 WD repeat and SOCS box containing 2 ASSOCIATED WITH Luo-Agrawal neurodevelopmental syndrome (ortholog) NW_004955455 13313072 13324496 + 102020418 AGCD01046069;GBBH01140149;GBDI01126390;XM_005396538 XP_005396595 MODEL 8942927 protein-coding Sprtn SprT-like N-terminal domain ENCODES a protein that exhibits double-stranded DNA binding (ortholog); K63-linked polyubiquitin modification-dependent protein binding (ortholog); metalloendopeptidase activity (ortholog); INVOLVED IN DNA damage response (ortholog); interstrand cross-link repair (ortholog); positive regulation of protein ubiquitination (ortholog); ASSOCIATED WITH Asthenozoospermia (ortholog); genetic disease (ortholog); Genomic Instability (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); nuclear speck (ortholog) NW_004955492 7463228 7476683 - 102007440 AGCD01060798;GBDF01044538;XM_005404971;XM_013504683;XM_013504684;XM_013504685;XM_013504686 XP_005405028;XP_013360137;XP_013360138;XP_013360139;XP_013360140 MODEL 8730510 protein-coding LOC102027581 protein PBDC1-like NW_004955562 2042235 2051730 - 102027581 AGCD01074014;AGCD01074015;GBDJ01408565;XM_005413093;XM_013509115 XP_005413150;XP_013364569 MODEL 8918248 protein-coding Tektl1 tektin like 1 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN axonemal B tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955495 8258304 8264462 - 102013944 AGCD01062195;GBDF01045979;XM_005406100 XP_005406157 MODEL 8758132 protein-coding LOC102009169 putative olfactory receptor 56B2 NW_004955414 21743001 21743960 + 102009169 AGCD01015431;XM_005380502 XP_005380559 MODEL 9063308 protein-coding Pign phosphatidylinositol glycan anchor biosynthesis class N ENCODES a protein that exhibits mannose-ethanolamine phosphotransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); choreatic disease (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955402 45979577 46114634 - 102019552 AGCD01001145;AGCD01001146;AGCD01001147;AGCD01001148;AGCD01001149;AGCD01001150;AGCD01001151;GBDI01310095;XM_005373015;XM_013511150;XM_013511154;XM_013511163;XM_013511173;XM_013511179;XR_001232906 XP_005373072;XP_013366604;XP_013366608;XP_013366617;XP_013366627;XP_013366633 MODEL 9065810 ncrna LOC102030007 uncharacterized LOC102030007 NW_004955555 2056043 2060272 - 102030007 AGCD01073126;GBDF01039219;XR_001232309;XR_264970 MODEL 9031384 pseudo LOC102020523 ubiquitin carboxyl-terminal hydrolase isozyme L3 pseudogene NW_004955405 14169274 14176291 + 102020523 AGCD01004919 MODEL 8767826 protein-coding Spag1 sperm associated antigen 1 ASSOCIATED WITH autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog); Cohen syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); protein folding chaperone complex (ortholog) NW_004955417 15417604 15482650 + 102017235 AGCD01018232;AGCD01018233;AGCD01018234;GBBH01219310;GBCE01023932;XM_013512759;XM_013512760 XP_013368213;XP_013368214 MODEL 8877913 ncrna LOC102009962 uncharacterized LOC102009962 NW_004955423 22423709 22437613 + 102009962 AGCD01023966;GBDF01176631;XR_260987 MODEL 9016101 pseudo LOC102011930 tripartite motif-containing protein 59-like NW_004955450 13491725 13492879 - 102011930 AGCD01042735 MODEL 8937339 trna Trnaw-cca transfer RNA tryptophan (anticodon CCA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978834 AGCD01005375;AGCD01048768;AGCD01051216;AGCD01051466;AGCD01051471;AGCD01057629 MODEL 9028731 pseudo LOC102006179 histidine triad nucleotide-binding protein 1 pseudogene NW_004955575 1174358 1174782 + 102006179 AGCD01075234 MODEL 8895999 pseudo LOC102023761 NEDD4 family-interacting protein 1 pseudogene NW_004955589 318420 319191 + 102023761 AGCD01076165 MODEL 8834109 protein-coding Pfkm phosphofructokinase, muscle ENCODES a protein that exhibits 6-phosphofructokinase activity (ortholog); AMP binding (ortholog); ATP binding (ortholog); INVOLVED IN canonical glycolysis (ortholog); fructose 1,6-bisphosphate metabolic process (ortholog); fructose 6-phosphate metabolic process (ortholog); PARTICIPATES IN Fanconi syndrome pathway; glycogen storage disease type VII pathway; glycolysis pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); glycogen storage disease (ortholog); FOUND IN 6-phosphofructokinase complex (ortholog); apical plasma membrane (ortholog); cytosol (ortholog) NW_004955500 6979169 7020375 + 102024135 AGCD01063896;AGCD01063897;GBCE01095084;XM_005406631;XM_005406633;XM_005406634 XP_005406688;XP_005406690;XP_005406691 MODEL 39133533 snrna U4 U4 spliceosomal RNA 8733208 protein-coding LOC102025482 melanoma-associated antigen 8-like NW_004955498 4854695 4856082 + 102025482 AGCD01063025;GBDF01234140;XM_005406488 XP_005406545 MODEL 10242397 protein-coding LOC106146258 olfactory receptor 7E24-like NW_004955495 709056 710045 + 106146258 AGCD01061650;XM_013505082 XP_013360536 MODEL 39131962 snorna SNORD116 Small nucleolar RNA SNORD116 8817338 ncrna LOC102012320 uncharacterized LOC102012320 NW_004955416 18878338 18879499 - 102012320 AGCD01017411;GBDF01086604;XR_260394 MODEL 8904253 ncrna LOC102024051 uncharacterized LOC102024051 NW_004955540 1528360 1541262 - 102024051 AGCD01071304;GBDF01156252;XR_001232115;XR_001232116 MODEL 8822781 protein-coding Idh3g isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma ENCODES a protein that exhibits enzyme activator activity (ortholog); isocitrate dehydrogenase (NAD+) activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN isocitrate metabolic process (ortholog); tricarboxylic acid cycle (ortholog); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; mitochondrial complex II deficiency pathway; ASSOCIATED WITH Emery-Dreifuss muscular dystrophy (ortholog); retinitis pigmentosa 99 (ortholog); spastic quadriplegic cerebral palsy (ortholog); FOUND IN isocitrate dehydrogenase complex (NAD+) (ortholog); mitochondrion (ortholog); photoreceptor inner segment (ortholog) NW_004955580 500712 507512 - 102017929 AGCD01075607;GBBH01060315;XM_005414148;XM_013509712 XP_005414205;XP_013365166 MODEL 8756955 protein-coding P2rx2 purinergic receptor P2X 2 ENCODES a protein that exhibits ATP binding (ortholog); cadmium ion binding (ortholog); cobalt ion binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); chemical synaptic transmission (ortholog); detection of hypoxic conditions in blood by carotid body chemoreceptor signaling (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 41 (ortholog); epilepsy (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); dendritic spine (ortholog) NW_004955482 418101 422058 - 102020446 AGCD01057172;GBDF01077337;XM_013503644;XM_013503645 XP_013359098;XP_013359099 MODEL 8776868 pseudo LOC102003040 peptidyl-prolyl cis-trans isomerase FKBP1A pseudogene NW_004955424 23204844 23205245 + 102003040 AGCD01025009 MODEL 8737414 ncrna LOC102018002 uncharacterized LOC102018002 NW_004955425 14697359 14703469 + 102018002 AGCD01025567;GBDF01279132;XR_261143 MODEL 8808218 protein-coding Pnldc1 PARN like ribonuclease domain containing exonuclease 1 ENCODES a protein that exhibits poly(A)-specific ribonuclease activity (ortholog); INVOLVED IN blastocyst formation (ortholog); nuclear-transcribed mRNA poly(A) tail shortening (ortholog); piRNA processing (ortholog); ASSOCIATED WITH male infertility (ortholog); oligospermia (ortholog); spermatogenic failure 3 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955439 21039638 21058558 - 102014496 AGCD01036135;GBDF01220476;XM_005390708;XM_005390709;XM_013517325;XM_013517326 XP_005390765;XP_005390766;XP_013372779;XP_013372780 MODEL 9053924 protein-coding Tmem94 transmembrane protein 94 ENCODES a protein that exhibits P-type magnesium transporter activity (ortholog); INVOLVED IN embryonic brain development (ortholog); embryonic heart tube development (ortholog); intracellular magnesium ion homeostasis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Intellectual Developmental Disorder with Cardiac Defects and Dysmorphic Facies (ortholog); Nervous System Malformations (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); nucleoplasm (ortholog) NW_004955553 2305425 2353596 + 102028585 AGCD01072935;GBDI01071197;XM_005412301;XM_005412302;XM_005412303;XM_005412305;XM_005412306;XM_005412307;XM_013508621;XM_013508622;XM_013508623;XM_013508624;XM_013508625 XP_005412358;XP_005412359;XP_005412360;XP_005412362;XP_005412363;XP_005412364;XP_013364075;XP_013364076;XP_013364077;XP_013364078;XP_013364079 MODEL 8949713 pseudo LOC102026891 40S ribosomal protein SA pseudogene NW_004955426 19426266 19428140 - 102026891 AGCD01026547 MODEL 8994865 protein-coding LOC102007274 FMR1 neighbor-like NW_004955532 1194463 1194945 + 102007274 AGCD01070170;XM_013507573 XP_013363027 MODEL 8802022 pseudo LOC102005826 cyclin-dependent kinase 11B pseudogene NW_004955511 3584330 3587487 - 102005826 AGCD01066468 MODEL 8843933 protein-coding Pigo phosphatidylinositol glycan anchor biosynthesis class O ENCODES a protein that exhibits mannose-ethanolamine phosphotransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hirschsprung's disease (ortholog); hyperphosphatasia with impaired intellectual development syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955472 1084932 1094243 + 102014348 AGCD01053373;GBCE01096334;XM_005401024;XM_005401025;XM_005401026;XM_013523034;XM_013523035 XP_005401081;XP_005401082;XP_005401083;XP_013378488;XP_013378489 MODEL 8715831 pseudo LOC102028224 60S ribosomal protein L30-like NW_004955434 2063707 2064055 - 102028224 AGCD01032086 MODEL 9023936 ncrna LOC102003383 uncharacterized LOC102003383 NW_004955440 16475861 16478883 - 102003383 AGCD01036518;GBDF01286061;XR_262033 MODEL 9013779 protein-coding LOC102029305 olfactory receptor 4A47-like NW_004955422 99333 105882 - 102029305 AGCD01022393;XM_005384929 XP_005384986 MODEL 10060518 ncrna LOC106146393 uncharacterized LOC106146393 NW_004955476 2169502 2175109 + 106146393 AGCD01055219;GBDF01076718;XR_001230813 MODEL 8779811 protein-coding Slc25a51 solute carrier family 25 member 51 ENCODES a protein that exhibits NAD transmembrane transporter activity (ortholog); INVOLVED IN aerobic electron transport chain (ortholog); mitochondrial NAD transmembrane transport (ortholog); NAD+ biosynthetic process via the salvage pathway (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955419 28580055 28594049 + 102028197 AGCD01020467;AGCD01020468;AGCD01020469;GBCE01108733;GBDF01122414;XM_013513300 XP_013368754 MODEL 9036894 ncrna LOC102008813 uncharacterized LOC102008813 NW_004955452 14619352 14627007 - 102008813 AGCD01044473;GBDF01305185;XR_262691 MODEL 8862260 protein-coding Erap1 endoplasmic reticulum aminopeptidase 1 ENCODES a protein that exhibits aminopeptidase activity (ortholog); endopeptidase activity (ortholog); interleukin-6 receptor binding (ortholog); INVOLVED IN antigen processing and presentation of peptide antigen via MHC class I (ortholog); membrane protein ectodomain proteolysis (ortholog); positive regulation of angiogenesis (ortholog); ASSOCIATED WITH ankylosing spondylitis (ortholog); Behcet's disease (ortholog); cervix carcinoma (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog) NW_004955418 15827560 15859720 + 102010260 AGCD01019112;AGCD01019113;GBCB01073859;GBCQ01099077;XM_013513048 XP_013368502 MODEL 9050043 pseudo LOC102025125 golgin subfamily A member 7 pseudogene NW_004955419 5623710 5624828 + 102025125 AGCD01019830 MODEL 8923336 protein-coding Spry1 sprouty RTK signaling antagonist 1 INVOLVED IN bud elongation involved in lung branching (ortholog); endothelial tube formation (ortholog); epithelial to mesenchymal transition involved in cardiac fibroblast development (ortholog); ASSOCIATED WITH genetic disease (ortholog); Peritoneal Fibrosis (ortholog); FOUND IN cytosol (ortholog) NW_004955428 17451703 17455695 - 102010288 AGCD01028042;GBCE01054093;GBDK01137505;XM_005386752 XP_005386809 MODEL 8805749 protein-coding Bet1 Bet1 golgi vesicular membrane trafficking protein INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); vesicle fusion with Golgi apparatus (ortholog); ASSOCIATED WITH congenital muscular dystrophy with rapid progression (ortholog); COVID-19 (ortholog); epilepsy (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955432 10762973 10774744 - 102011573 AGCD01030936;GBDF01048008;XM_005388040 XP_005388097 MODEL 8901969 protein-coding Lamc3 laminin subunit gamma 3 INVOLVED IN astrocyte development (ortholog); cell morphogenesis (ortholog); retina development in camera-type eye (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); brain disease (ortholog); epilepsy (ortholog); FOUND IN basement membrane (ortholog) NW_004955513 872301 934234 + 102021586 AGCD01066834;AGCD01066835;AGCD01066836;AGCD01066837;GBCE01021711;XM_005408636 XP_005408693 MODEL 8710706 pseudo LOC102018352 PEST proteolytic signal-containing nuclear protein pseudogene NW_004955597 71046 72218 - 102018352 AGCD01076536;XR_265145 MODEL 8836978 protein-coding Klhl32 kelch like family member 32 NW_004955411 22923576 23120303 + 102020096 AGCD01012101;AGCD01012102;GBDF01016307;XM_005377793;XM_005377794;XM_013510926;XM_013510927;XM_013510928;XM_013510929;XM_013510930;XM_013510931;XM_013510932 XP_005377850;XP_005377851;XP_013366380;XP_013366381;XP_013366382;XP_013366383;XP_013366384;XP_013366385;XP_013366386 MODEL 8829446 protein-coding LOC102026540 prolactin-inducible protein homolog NW_004955494 560132 565297 - 102026540 AGCD01061382;XM_005405525 XP_005405582 MODEL 8742745 ncrna LOC102004424 uncharacterized LOC102004424 NW_004955438 15400685 15404077 + 102004424 AGCD01035366;GBDF01187415;XR_261938 MODEL 8704062 pseudo LOC102019544 40S ribosomal protein S6 pseudogene NW_004955568 1456206 1472192 + 102019544 AGCD01074545 MODEL 9060204 ncrna LOC102015308 uncharacterized LOC102015308 NW_004955470 3790799 3796782 + 102015308 AGCD01052711;AGCD01052712;GBCB01023210;XR_263468 MODEL 8740163 pseudo LOC102020526 elongation factor 1-beta pseudogene NW_004955406 13063771 13075531 + 102020526 AGCD01005932 MODEL 9023658 protein-coding Tmem95 transmembrane protein 95 INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); FOUND IN acrosomal membrane (ortholog) NW_004955467 9562723 9564818 - 102018275 AGCD01051518;GBDF01119713;XM_005399509 XP_005399566 MODEL 8954511 protein-coding Shank1 SH3 and multiple ankyrin repeat domains 1 ENCODES a protein that exhibits ankyrin repeat binding (ortholog); G protein-coupled receptor binding (ortholog); identical protein binding (ortholog); INVOLVED IN adult behavior (ortholog); AMPA selective glutamate receptor signaling pathway (ortholog); associative learning (ortholog); ASSOCIATED WITH anxiety disorder (ortholog); autistic disorder (ortholog); developmental and epileptic encephalopathy 11 (ortholog); FOUND IN dendrite (ortholog); dendritic spine (ortholog); excitatory synapse (ortholog) NW_004955559 522466 566275 + 102015463 AGCD01073591;AGCD01073592;AGCD01073593;GBCQ01015314;XM_013508943 XP_013364397 MODEL 10134918 ncrna LOC106150056 uncharacterized LOC106150056 NW_004955406 21861759 21862914 - 106150056 AGCD01006148;GBDJ01302264;XR_001236628 MODEL 8701517 protein-coding LOC102030009 cytochrome c oxidase subunit 7B2, mitochondrial INVOLVED IN spermatogenesis (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955443 1650087 1768318 + 102030009 AGCD01038139;AGCD01038140;AGCD01038141;AGCD01038142;AGCD01038143;GBDF01004752;XM_005391898;XM_005391899;XM_013518038 XP_005391955;XP_005391956;XP_013373492 MODEL 10079541 ncrna LOC106146525 uncharacterized LOC106146525 NW_004955483 9145995 9159738 - 106146525 AGCD01057857;GBDK01352453;XR_001231004 MODEL 10294446 ncrna LOC106146947 uncharacterized LOC106146947 NW_004955506 5255245 5273187 - 106146947 AGCD01065359;AGCD01065360;GBDF01222339;XR_001231598;XR_001231599;XR_001231600;XR_001231601 MODEL 10210965 protein-coding LOC106146667 translation initiation factor IF-2-like NW_004955491 6243287 6245520 - 106146667 AGCD01060522;AGCD01060523;GBDJ01361903;XM_013504568 XP_013360022 MODEL 8936891 protein-coding LOC102006182 arylacetamide deacetylase-like NW_004955448 3031084 3044420 + 102006182 AGCD01041300;AGCD01041301;GBBH01008796;XM_005393036 XP_005393093 MODEL 8924004 protein-coding Ncs1 neuronal calcium sensor 1 ENCODES a protein that exhibits calcium ion binding (ortholog); magnesium ion binding (ortholog); protein kinase binding (ortholog); INVOLVED IN positive regulation of calcium-mediated signaling (ortholog); positive regulation of exocytosis (ortholog); regulation of neuron projection development (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; FOUND IN axon (ortholog); calyx of Held (ortholog); cytoplasm (ortholog) NW_004955513 268979 289385 + 102015336 AGCD01066819;AGCD01066820;GBCQ01068735;GBCQ01068739;XM_005408341 XP_005408398 MODEL 10168788 ncrna LOC106146260 uncharacterized LOC106146260 NW_004955455 5166748 5175850 + 106146260 AGCD01045720;GBDJ01087838;XR_262835 MODEL 8860508 protein-coding Wscd1 WSC domain sialate O sulfotransferase 1 ENCODES a protein that exhibits sulfotransferase activity (ortholog); ASSOCIATED WITH Liver Neoplasms (ortholog); pre-malignant neoplasm (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955467 11642318 11684265 + 102030293 AGCD01051614;AGCD01051615;AGCD01051616;GBDJ01225220;XM_005399657;XM_005399659 XP_005399714;XP_005399716 MODEL 8967982 protein-coding LOC102003044 olfactory receptor 8K3-like NW_004955511 1368604 1369545 + 102003044 AGCD01066365;XM_005407956 XP_005408013 MODEL 8732859 protein-coding Sat2 spermidine/spermine N1-acetyltransferase family member 2 ENCODES a protein that exhibits diamine N-acetyltransferase activity (ortholog); identical protein binding (ortholog); N-acetyltransferase activity (ortholog); INVOLVED IN nor-spermidine metabolic process (ortholog); polyamine biosynthetic process (ortholog); PARTICIPATES IN hypoxia inducible factor pathway NW_004955467 9306210 9308668 + 102007640 AGCD01051494;GBDK01232568;XM_005399471;XM_013522147 XP_005399528;XP_013377601 MODEL 8965423 protein-coding P2rx3 purinergic receptor P2X 3 ENCODES a protein that exhibits ATP binding (ortholog); extracellularly ATP-gated monoatomic cation channel activity (ortholog); identical protein binding (ortholog); INVOLVED IN behavioral response to formalin induced pain (ortholog); behavioral response to pain (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH Hyperalgesia (ortholog); Nervous System Trauma (ortholog); FOUND IN axon (ortholog); dendritic spine (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog) NW_004955511 2389717 2410968 + 102015429 AGCD01066401;GBDF01291113;XM_005407988;XM_005407989;XM_005407990;XM_005407991 XP_005408045;XP_005408046;XP_005408047;XP_005408048 MODEL 10189026 protein-coding LOC106148042 uncharacterized LOC106148042 NW_004955414 32150099 32155142 - 106148042 AGCD01015774;GBCE01130186;XM_013512030;XR_001233162 XP_013367484 MODEL 8783146 protein-coding Eras ES cell expressed Ras NW_004955543 381756 383093 + 102026258 AGCD01071579;XM_005415247 XP_005415304 MODEL 8869535 protein-coding LOC102009964 vegetative cell wall protein gp1-like NW_004955495 4922998 4925566 + 102009964 AGCD01061964;GBCQ01088688;XM_005406155 XP_005406212 MODEL 9045398 protein-coding Spag16 sperm associated antigen 16 ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN axoneme assembly (ortholog); cell motility in response to calcium ion (ortholog); cerebrospinal fluid circulation (ortholog); ASSOCIATED WITH fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN axonemal central apparatus (ortholog); axoneme (ortholog); cytoplasm (ortholog) NW_004955457 1543946 2492686 - 102022257 AGCD01046727;AGCD01046728;AGCD01046729;AGCD01046730;AGCD01046731;AGCD01046732;AGCD01046733;AGCD01046734;AGCD01046735;AGCD01046736;AGCD01046737;AGCD01046738;AGCD01046739;AGCD01046740;AGCD01046741;AGCD01046742;AGCD01046743;AGCD01046744;AGCD01046745;GBDF01050344;XM_005396922;XM_005396923;XM_005396924;XM_005396927;XM_013520778;XM_013520779;XM_013520780;XM_013520781 XP_005396979;XP_005396980;XP_005396981;XP_005396984;XP_013376232;XP_013376233;XP_013376234;XP_013376235 MODEL 15036850 trna Trnay-aua transfer RNA tyrosine (anticodon AUA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe 101978818 8838594 protein-coding LOC102021330 olfactory receptor 51A4-like NW_004955414 20549923 20550842 - 102021330 AGCD01015380;XM_013511771 XP_013367225 MODEL 8740841 pseudo LOC102005827 60S ribosomal protein L6-like NW_004955430 3987198 3988065 - 102005827 AGCD01029239;XR_261416 MODEL 8819945 pseudo LOC102023768 tropomyosin alpha-4 chain pseudogene NW_004955626 97563 106569 + 102023768 AGCD01077466;AGCD01077467;AGCD01077468 MODEL 8973084 protein-coding LOC102011936 nuclear pore complex protein Nup50-like NW_004955801 1035 19256 - 102011936 AGCD01078375;GBDK01393605;XM_005415113;XM_013510195;XM_013510196 XP_005415170;XP_013365649;XP_013365650 MODEL 39133534 snrna U4 U4 spliceosomal RNA 39131961 snorna SNORD116 Small nucleolar RNA SNORD116 8938427 protein-coding Pfkp phosphofructokinase, platelet ENCODES a protein that exhibits 6-phosphofructokinase activity (ortholog); ATP binding (ortholog); fructose-6-phosphate binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); fructose 1,6-bisphosphate metabolic process (ortholog); fructose 6-phosphate metabolic process (ortholog); PARTICIPATES IN glycolysis pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); syndromic microphthalmia 5 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955421 28042973 28098358 - 102021982 AGCD01022307;AGCD01022308;GBDF01008382;XM_005383907;XM_005383908;XM_013513655;XM_013513656;XM_013513657;XM_013513658 XP_005383964;XP_005383965;XP_013369109;XP_013369110;XP_013369111;XP_013369112 MODEL 8907004 pseudo LOC102009179 60S ribosomal protein L23a pseudogene NW_004955418 372775 373635 - 102009179 AGCD01018673 MODEL 8890107 pseudo LOC102024054 60S ribosomal protein L36 pseudogene NW_004955545 2470677 2471253 - 102024054 AGCD01071903 MODEL 9003969 protein-coding LOC102012322 galectin-5-like NW_004955481 5560268 5566976 - 102012322 AGCD01056994;AGCD01056995;GBDK01183989;XM_005402780 XP_005402837 MODEL 8731628 pseudo LOC102018003 ubiquitin-conjugating enzyme E2 C pseudogene NW_004955500 8246022 8246543 - 102018003 AGCD01063985 MODEL 8833754 protein-coding Idnk IDNK gluconokinase ENCODES a protein that exhibits gluconokinase activity (ortholog) NW_004955432 3626148 3647285 - 102011033 AGCD01030672;AGCD01030673;GBDI01383927;XM_013516000;XM_013516001 XP_013371454;XP_013371455 MODEL 8733279 protein-coding LOC102027587 small EDRK-rich factor 1 NW_004955575 322677 327081 - 102027587 AGCD01075215;AGCD01075216;AGCD01075217;AGCD01075218;GBDF01003963;XM_005413924 XP_005413981 MODEL 8892866 protein-coding Telo2 telomere maintenance 2 ENCODES a protein that exhibits Hsp90 protein binding (ortholog); kinase binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN protein stabilization (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH epilepsy (ortholog); genetic disease (ortholog); microcephaly (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955442 15719082 15733527 - 102003812 AGCD01037878;GBDK01280932;XM_005391562;XM_005391563;XM_013517675;XR_001235360 XP_005391619;XP_005391620;XP_013373129 MODEL 10158854 ncrna LOC106149238 uncharacterized LOC106149238 NW_004955441 11998097 11999475 - 106149238 AGCD01037116;GBCE01036095;XR_001235290 MODEL 9002638 protein-coding Pnliprp1 pancreatic lipase related protein 1 ENCODES a protein that exhibits calcium ion binding (ortholog); lipase activity (ortholog); INVOLVED IN pancreas development (ortholog); response to glucocorticoid (ortholog); response to peptide hormone (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN extracellular region (ortholog) NW_004955431 21391166 21406617 + 102023510 AGCD01030496;XM_005387852 XP_005387909 MODEL 8864463 protein-coding LOC102026896 olfactory receptor 5W2-like NW_004955511 749241 750173 + 102026896 AGCD01066342;XM_005407946 XP_005408003 MODEL 8901578 protein-coding LOC102025126 glutathione S-transferase omega-1 NW_004955485 6391364 6403112 - 102025126 AGCD01058618;GBCB01001864;GBDJ01025506;XM_005403783 XP_005403840 MODEL 8733485 protein-coding Lamp1 lysosomal associated membrane protein 1 ENCODES a protein that exhibits enzyme binding (ortholog); ion channel inhibitor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN autophagic cell death (ortholog); establishment of protein localization to organelle (ortholog); Golgi to lysosome transport (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH Streptococcus pneumonia (ortholog); FOUND IN alveolar lamellar body (ortholog); autolysosome (ortholog); autophagosome membrane (ortholog) NW_004955404 557090 573532 - 102005766 AGCD01003203;GBBH01004584;XM_005373950;XM_005373951 XP_005374007;XP_005374008 MODEL 10065053 protein-coding LOC106150057 uncharacterized LOC106150057 NW_004955463 13414812 13446351 - 106150057 AGCD01049866;AGCD01049867;XM_013521491 XP_013376945 MODEL 10351410 ncrna LOC106146668 uncharacterized LOC106146668 NW_004955491 8660052 8662831 - 106146668 AGCD01060620;XR_001231210 MODEL 10383177 ncrna LOC106146526 uncharacterized LOC106146526 NW_004955483 1383611 1384656 - 106146526 AGCD01057645;GBDK01121800;XR_001231005 MODEL 10214947 protein-coding LOC106146948 translation initiation factor IF-2-like NW_004955407 39250170 39266549 - 106146948 AGCD01007824;GBBH01146789;GBDJ01280374;XM_013506072 XP_013361526 MODEL 9003678 protein-coding LOC102029308 tigger transposable element-derived protein 1-like NW_004955495 7471529 7498381 - 102029308 AGCD01062142;AGCD01062143;GBCE01156713;XM_005406055;XM_013505351;XM_013505352;XM_013505353 XP_005406112;XP_013360805;XP_013360806;XP_013360807 MODEL 8791048 protein-coding LOC102008817 C4b-binding protein alpha chain-like NW_004955406 42709359 42715864 + 102008817 AGCD01006714;GBBH01192869;XM_005375486 XP_005375543 MODEL 8915717 protein-coding Wscd2 WSC domain sialate O sulfotransferase 2 ENCODES a protein that exhibits sulfotransferase activity (ortholog); ASSOCIATED WITH Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955455 9433628 9549862 + 102022566 AGCD01045921;AGCD01045922;AGCD01045923;GBBH01097863;GBCQ01173215;XM_013520454;XM_013520455 XP_013375908;XP_013375909 MODEL 8871078 protein-coding Bet1l Bet1 golgi vesicular membrane trafficking protein like ENCODES a protein that exhibits SNAP receptor activity (ortholog); INVOLVED IN regulation of retrograde vesicle-mediated transport, Golgi to ER (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH endometrial adenocarcinoma (ortholog); uterine fibroid (ortholog); FOUND IN endosome (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955476 11833595 11836411 + 102003233 AGCD01055475;GBDK01142903;XM_005401891;XM_013502918 XP_005401948;XP_013358372 MODEL 8982547 protein-coding Pfn1 profilin 1 ENCODES a protein that exhibits actin binding (ortholog); actin monomer binding (ortholog); adenyl-nucleotide exchange factor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cellular response to growth factor stimulus (ortholog); modification of postsynaptic actin cytoskeleton (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 18 (ortholog); esophagus squamous cell carcinoma (ortholog); FOUND IN cell cortex (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955467 10357838 10360651 - 102018583 AGCD01051561;GBDF01004937;XM_005399610 XP_005399667 MODEL 8860481 protein-coding Satb1 SATB homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN activated T cell proliferation (ortholog); CD4-positive, alpha-beta T cell differentiation (ortholog); CD8-positive, alpha-beta T cell differentiation (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); autism spectrum disorder (ortholog); DEVELOPMENTAL DELAY WITH DYSMORPHIC FACIES AND DENTAL ANOMALIES (ortholog); FOUND IN chromatin (ortholog); heterochromatin (ortholog); nuclear body (ortholog) NW_004955430 10587539 10683887 - 102029889 AGCD01029438;AGCD01029439;AGCD01029440;GBDI01013807;XM_005387457;XM_005387458;XM_013515670;XM_013515671;XM_013515672 XP_005387514;XP_005387515;XP_013371124;XP_013371125;XP_013371126 MODEL 10345872 ncrna LOC106148043 uncharacterized LOC106148043 NW_004955414 32157805 32163233 - 106148043 AGCD01015776;XR_001233163 MODEL 9029124 ncrna LOC102025484 uncharacterized LOC102025484 NW_004955425 4871064 4894040 - 102025484 AGCD01025321;AGCD01025322;GBDK01053306;XR_001234256;XR_001234257;XR_001234258;XR_001234259 MODEL 8724552 pseudo LOC102004427 KATNB1-like protein 1 NW_004955553 1440942 1443862 - 102004427 AGCD01072882 MODEL 9022994 ncrna LOC102020530 uncharacterized LOC102020530 NW_004955408 34283024 34285978 + 102020530 AGCD01008899;AGCD01008900;GBCB01005470;XR_259730 MODEL 8713977 protein-coding Tmem97 transmembrane protein 97 ENCODES a protein that exhibits oxysterol binding (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); positive regulation of lipoprotein transport (ortholog); positive regulation of wound healing (ortholog); FOUND IN endoplasmic reticulum (ortholog); lysosome (ortholog); nuclear membrane (ortholog) NW_004955481 4807850 4817006 - 102009178 AGCD01056953;GBDI01175765;XM_005402770 XP_005402827 MODEL 8701738 protein-coding LOC102015309 olfactory receptor 52K1 NW_004955414 20126801 20127745 + 102015309 AGCD01015358;XM_005380048 XP_005380105 MODEL 9061538 protein-coding Pigp phosphatidylinositol glycan anchor biosynthesis class P ENCODES a protein that exhibits phosphatidylinositol N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 55 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog) NW_004955407 36178323 36185317 - 102013906 AGCD01007761;XM_013504675 XP_013360129 MODEL 8998560 protein-coding LOC102003389 vomeronasal type-1 receptor 1-like NW_004955558 668713 669606 + 102003389 AGCD01073385;XM_005412740 XP_005412797 MODEL 10378468 ncrna LOC106146394 uncharacterized LOC106146394 NW_004955477 2298361 2322639 - 106146394 AGCD01055518;AGCD01055519;XR_001230814 MODEL 9047201 ncrna LOC102030012 uncharacterized LOC102030012 NW_004955445 1779168 1785321 - 102030012 AGCD01039345;GBDF01016603;XR_262293 MODEL 9016002 ncrna LOC102005831 uncharacterized LOC102005831 NW_004955514 2457669 2462790 + 102005831 AGCD01067082;GBDF01145712;XR_264496 MODEL 9031308 protein-coding Shank2 SH3 and multiple ankyrin repeat domains 2 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); SH3 domain binding (ortholog); structural constituent of postsynaptic density (ortholog); INVOLVED IN adult behavior (ortholog); adult locomotory behavior (ortholog); associative learning (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); bipolar disorder (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); ciliary membrane (ortholog) NW_004955422 15295800 15818067 + 102018504 AGCD01022876;AGCD01022877;AGCD01022878;AGCD01022879;AGCD01022880;AGCD01022881;AGCD01022882;GBBH01227949;XM_013514155;XM_013514156;XM_013514157 XP_013369609;XP_013369610;XP_013369611 MODEL 8909328 protein-coding Slc25a53 solute carrier family 25 member 53 FOUND IN mitochondrion (ortholog) NW_004955548 947623 1008085 - 102029904 AGCD01072349;AGCD01072350;AGCD01072351;AGCD01072352;AGCD01072353;GBCE01004957;XM_005412000;XM_005412001;XM_005412003;XM_005412004;XM_005412005;XM_013508524;XM_013508525;XM_013508526;XM_013508527;XR_001232240 XP_005412057;XP_005412058;XP_005412060;XP_005412061;XP_005412062;XP_013363978;XP_013363979;XP_013363980;XP_013363981 MODEL 39133535 snrna U4 U4 spliceosomal RNA 9044849 protein-coding LOC102026897 olfactory receptor 5B12-like NW_004955511 3054577 3057764 - 102026897 AGCD01066440;GBDF01307465;XM_005408024;XM_005408025;XM_005408026 XP_005408081;XP_005408082;XP_005408083 MODEL 8750454 protein-coding Spag17 sperm associated antigen 17 INVOLVED IN axonemal central apparatus assembly (ortholog); epithelial cilium movement involved in extracellular fluid movement (ortholog); intramanchette transport (ortholog); ASSOCIATED WITH cranioectodermal dysplasia 2 (ortholog); Idiopathic Short Stature, Autosomal (ortholog); Meniere's disease (ortholog); FOUND IN acrosomal vesicle (ortholog); axonemal central apparatus (ortholog); cytoplasm (ortholog) NW_004955435 21063005 21281997 - 102011581 AGCD01033468;AGCD01033469;AGCD01033470;AGCD01033471;AGCD01033472;AGCD01033473;AGCD01033474;GBDK01356416;XM_005389065;XM_013516482;XM_013516483;XM_013516484;XM_013516485;XM_013516486;XM_013516488;XR_001234871 XP_005389122;XP_013371936;XP_013371937;XP_013371938;XP_013371939;XP_013371940;XP_013371942 MODEL 8838344 protein-coding Ncstn nicastrin ENCODES a protein that exhibits aspartic endopeptidase activity, intramembrane cleaving (ortholog); ATPase binding (ortholog); endopeptidase activator activity (ortholog); INVOLVED IN adult behavior (ortholog); amyloid precursor protein biosynthetic process (ortholog); amyloid precursor protein catabolic process (ortholog); PARTICIPATES IN Notch signaling pathway; syndecan signaling pathway; ASSOCIATED WITH alcohol use disorder (ortholog); Alzheimer's disease (ortholog); chronic myeloid leukemia (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); early endosome (ortholog); endoplasmic reticulum (ortholog) NW_004955468 12111078 12126404 + 102017324 AGCD01052143;AGCD01052144;GBDF01046063;XM_005400205 XP_005400262 MODEL 9028597 pseudo LOC102003054 importin subunit alpha-1 pseudogene NW_004955519 4042312 4044048 + 102003054 AGCD01067975 MODEL 8908413 protein-coding LOC102015312 olfactory receptor 481-like NW_004955414 23472089 23473030 + 102015312 AGCD01015499;XM_005380516 XP_005380573 MODEL 8818123 protein-coding LOC102018354 vomeronasal type-2 receptor 116-like NW_004955622 53461 73801 - 102018354 AGCD01077382;AGCD01077383;AGCD01077384;XM_005415017 XP_005415074 MODEL 8750985 protein-coding Spry2 sprouty RTK signaling antagonist 2 ENCODES a protein that exhibits enzyme inhibitor activity (ortholog); molecular function inhibitor activity (ortholog); protein kinase binding (ortholog); INVOLVED IN branching morphogenesis of an epithelial tube (ortholog); bud elongation involved in lung branching (ortholog); cell fate commitment (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH achalasia (ortholog); ciliopathy (ortholog); cleft lip (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoskeleton (ortholog); cytosol (ortholog) NW_004955404 27349286 27353706 + 102007497 AGCD01003924;AGCD01003925;GBBH01227874;GBDJ01272981;XM_005374123 XP_005374180 MODEL 8995513 protein-coding P2rx4 purinergic receptor P2X 4 ENCODES a protein that exhibits ATP binding (ortholog); ATP-gated ion channel activity (ortholog); cadherin binding (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); behavioral response to pain (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH congestive heart failure (ortholog); COVID-19 (ortholog); epilepsy (ortholog); FOUND IN apical part of cell (ortholog); axon (ortholog); cell body (ortholog) NW_004955482 7031874 7039026 - 102003766 AGCD01057435;GBBH01062763;GBCB01110807;XM_013503678 XP_013359132 MODEL 8835734 protein-coding LOC102019545 death-inducer obliterator 1-like NW_004955445 36374 39104 - 102019545 AGCD01039300;GBCE01129387;XM_013518234 XP_013373688 MODEL 8854911 protein-coding Klhl33 kelch like family member 33 NW_004955550 1239143 1247570 - 102024616 AGCD01072557;GBCB01021966;XM_005412060;XM_013508570 XP_005412117;XP_013364024 MODEL 8885512 ncrna LOC102008818 uncharacterized LOC102008818 NW_004955407 17028813 17032767 - 102008818 AGCD01007235;GBCB01103543;XR_259562 MODEL 8895231 ncrna LOC102028229 uncharacterized LOC102028229 NW_004955436 5139898 5160523 + 102028229 AGCD01033675;XR_261763 MODEL 9056976 protein-coding Wt1 WT1 transcription factor ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN adrenal cortex formation (ortholog); adrenal gland development (ortholog); apoptotic process (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); acute promyelocytic leukemia (ortholog); Alzheimer's disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear speck (ortholog) NW_004955476 10464688 10504473 - 102010054 AGCD01055423;GBDJ01006823;GBDJ01006829;XM_005401901;XM_013503000;XM_013503001;XM_013503002 XP_005401958;XP_013358454;XP_013358455;XP_013358456 MODEL 9007408 protein-coding LOC102025127 somatostatin-like NW_004955420 20082135 20083273 + 102025127 AGCD01021071;XM_005383250 XP_005383307 MODEL 8924748 pseudo LOC102023774 60S ribosomal protein L9 pseudogene NW_004955406 21120653 21145098 + 102023774 AGCD01006119 MODEL 8913213 protein-coding Lamp2 lysosomal associated membrane protein 2 ENCODES a protein that exhibits enzyme binding (ortholog); ion channel inhibitor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN autophagosome maturation (ortholog); autophagy (ortholog); cellular response to starvation (ortholog); PARTICIPATES IN autophagy pathway; chaperone mediated autophagy pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); cardiomyopathy (ortholog); cholestasis (ortholog); FOUND IN autolysosome (ortholog); autophagosome membrane (ortholog); chaperone-mediated autophagy translocation complex (ortholog) NW_004955572 1423048 1464443 + 102004760 AGCD01074953;GBDF01195104;XM_005413661;XM_005413662 XP_005413718;XP_005413719 MODEL 9012893 pseudo LOC102024056 crooked neck-like protein 1 NW_004955443 299763 302020 - 102024056 AGCD01038096 MODEL 8782010 pseudo LOC102007279 magnesium transporter NIPA2 pseudogene NW_004955439 11430788 11431838 + 102007279 AGCD01035908 MODEL 10179762 ncrna LOC106146669 uncharacterized LOC106146669 NW_004955407 35405653 35410165 + 106146669 AGCD01007742;GBDI01230074;XR_001231211 MODEL 8844984 protein-coding LOC102012324 olfactory receptor 14I1-like NW_004955418 30244034 30244983 + 102012324 AGCD01019507;XM_013512881 XP_013368335 MODEL 39133692 misc_rna Telomerase-vert Vertebrate telomerase RNA 8781560 protein-coding Ido1 indoleamine 2,3-dioxygenase 1 ENCODES a protein that exhibits amino acid binding (ortholog); indoleamine 2,3-dioxygenase activity (ortholog); L-tryptophan 2,3-dioxygenase activity (ortholog); INVOLVED IN inflammatory response (ortholog); kynurenic acid biosynthetic process (ortholog); L-tryptophan catabolic process (ortholog); PARTICIPATES IN kynurenine metabolic pathway; tryptophan metabolic pathway; ASSOCIATED WITH acquired immunodeficiency syndrome (ortholog); Acute Lung Injury (ortholog); Animal Toxoplasmosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); smooth muscle contractile fiber (ortholog) NW_004955536 2944770 2955829 - 102018327 AGCD01070806;GBDK01080179;XM_005410538 XP_005410595 MODEL 8942798 protein-coding LOC102027588 cytochrome P450 2A13 NW_004955578 214952 221459 + 102027588 AGCD01075465;GBDI01001310;XM_005414001 XP_005414058 MODEL 8837871 protein-coding LOC102026548 olfactory receptor 8S1-like NW_004955500 7401475 7402527 - 102026548 AGCD01063919;XM_005406714 XP_005406771 MODEL 8953676 protein-coding Slc26a1 solute carrier family 26 member 1 ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); oxalate transmembrane transporter activity (ortholog); solute:inorganic anion antiporter activity (ortholog); INVOLVED IN chloride transport (ortholog); oxalate transport (ortholog); sulfate transmembrane transport (ortholog); ASSOCIATED WITH Calcium Oxalate Nephrolithiasis 1 (ortholog); genetic disease (ortholog); Hyperoxaluria (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955514 476062 484710 - 102011141 AGCD01067012;GBCQ01036206;XM_005408685;XM_013506832;XM_013506833 XP_005408742;XP_013362286;XP_013362287 MODEL 8789629 protein-coding Erbb2 erb-b2 receptor tyrosine kinase 2 ENCODES a protein that exhibits coreceptor activity (ortholog); ErbB-3 class receptor binding (ortholog); growth factor binding (ortholog); INVOLVED IN axon regeneration (ortholog); cell population proliferation (ortholog); cell surface receptor protein tyrosine kinase signaling pathway (ortholog); PARTICIPATES IN altered epidermal growth factor/neuregulin signaling pathway; endometrial cancer pathway; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); amblyopia (ortholog); Animal Disease Models (ortholog); FOUND IN cell projection; apical plasma membrane (ortholog); basal plasma membrane (ortholog) NW_004955451 14442816 14456009 + 102029927 AGCD01043554;GBDF01303586;XM_005394319 XP_005394376 MODEL 8735670 pseudo LOC102006187 serine/threonine/tyrosine-interacting protein pseudogene NW_004955588 34411 37242 - 102006187 AGCD01076076;AGCD01076077 MODEL 8905457 trna Trnay-gua transfer RNA tyrosine (anticodon GUA) This record serves to anchor the annotations of this class of tRNAs at multiple locations on the chinchilla, long-tailed genome. The placements are predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMe MT 1 1 101978819 AGCD01039088;AGCD01052488;AGCD01057606;AGCD01072575;AGCD01072578 MODEL 8755020 pseudo LOC102021335 interferon alpha-4-like NW_004955472 12915361 12916194 + 102021335 AGCD01053825 MODEL 8960607 ncrna LOC102011937 uncharacterized LOC102011937 NW_004955403 40009315 40019121 + 102011937 AGCD01002656;AGCD01002657;GBDF01192639;XR_259230 MODEL 8960938 protein-coding Bex2 brain expressed X-linked 2 ENCODES a protein that exhibits molecular function inhibitor activity (ortholog); INVOLVED IN axon development (ortholog); axon regeneration (ortholog); negative regulation of protein ubiquitination (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955548 439061 505418 - 102023748 AGCD01072332;AGCD01072333;GBCE01172021;XM_005411981;XM_005411982;XM_005411984;XM_005411985;XM_013508531 XP_005412038;XP_005412039;XP_005412041;XP_005412042;XP_013363985 MODEL 10235790 ncrna LOC106146261 uncharacterized LOC106146261 NW_004955464 13577755 13592690 + 106146261 AGCD01050290;GBDK01309359;XR_001236687;XR_001236688 MODEL 39131960 snorna SNORD116 Small nucleolar RNA SNORD116 8781238 protein-coding LOC102009182 zinc finger protein 709-like NW_004955483 60152 101435 + 102009182 AGCD01057595;AGCD01057596;AGCD01057597;AGCD01057598;XM_005403269;XM_013503758 XP_005403326;XP_013359212 MODEL 10209624 ncrna LOC106150058 uncharacterized LOC106150058 NW_004955463 12929242 12935961 - 106150058 AGCD01049860;GBDF01165326;XR_001236629 MODEL 10067472 pseudo LOC106146395 translationally-controlled tumor protein pseudogene NW_004955406 33394984 33395263 + 106146395 AGCD01006471 MODEL 8858368 pseudo LOC102030016 protein kish-A pseudogene NW_004955447 4556230 4558670 - 102030016 AGCD01040723 MODEL 8767652 ncrna LOC102005832 uncharacterized LOC102005832 NW_004955432 9508053 9514240 + 102005832 AGCD01030907;GBDF01055577;XR_261519 MODEL 39133536 snrna U4 U4 spliceosomal RNA 10160299 ncrna LOC106149239 uncharacterized LOC106149239 NW_004955441 10255342 10261006 - 106149239 AGCD01037082;GBCE01107026;XR_001235291;XR_001235292;XR_001235293 MODEL 8802364 protein-coding Pnliprp2 pancreatic lipase related protein 2 ENCODES a protein that exhibits calcium ion binding (ortholog); galactolipase activity (ortholog); glycerophospholipase activity (ortholog); INVOLVED IN cellular defense response (ortholog); galactolipid catabolic process (ortholog); intestinal lipid catabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; FOUND IN extracellular region (ortholog); neuron projection (ortholog); zymogen granule membrane (ortholog) NW_004955431 21425345 21442979 + 102023834 AGCD01030496;GBDJ01313541;XM_005387853 XP_005387910 MODEL 9006521 protein-coding LOC102018356 large proline-rich protein BAG6-like NW_004955452 7679732 7684898 + 102018356 AGCD01044181;AGCD01044182;GBDI01323361;XM_005394959;XM_013519492 XP_005395016;XP_013374946 MODEL 9053795 ncrna LOC102025485 uncharacterized LOC102025485 NW_004955502 2733336 2790138 + 102025485 AGCD01064303;AGCD01064304;GBDF01017540;XR_264264 MODEL 8780304 protein-coding Pfn2 profilin 2 ENCODES a protein that exhibits actin binding (ortholog); actin monomer binding (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); modification of postsynaptic actin cytoskeleton (ortholog); modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog); presynapse (ortholog) NW_004955448 1199447 1201718 - 102022650 AGCD01041253;GBCC01001537;GBDK01092029;XM_005393006 XP_005393063 MODEL 8701850 pseudo LOC102020532 olfactory receptor 6C74-like NW_004955458 2708299 2716739 + 102020532 AGCD01047240 MODEL 8980605 pseudo LOC102004429 40S ribosomal protein S2 pseudogene NW_004955561 1164116 1164961 - 102004429 AGCD01073840 MODEL 9015333 protein-coding P2rx5 purinergic receptor P2X 5 ENCODES a protein that exhibits ATP binding (ortholog); ATP-gated ion channel activity (ortholog); extracellularly ATP-gated monoatomic cation channel activity (ortholog); INVOLVED IN chloride transport (ortholog); monoatomic cation transmembrane transport (ortholog); osteoclast maturation (ortholog); FOUND IN plasma membrane (ortholog) NW_004955467 13125710 13140031 + 102019048 AGCD01051666;AGCD01051667;GBCB01097648;GBDI01327884;XM_005399710 XP_005399767 MODEL 8745254 protein-coding LOC102028232 twinfilin-1 NW_004955532 3900564 3903532 + 102028232 AGCD01070304;GBBH01088455;XM_005410349 XP_005410406 MODEL 8962479 pseudo LOC102003391 pre-mRNA-splicing factor RBM22 pseudogene NW_004955443 7720328 7734609 + 102003391 AGCD01038296;AGCD01038297 MODEL 9004030 ncrna LOC102018004 uncharacterized LOC102018004 NW_004955426 14561873 14580787 + 102018004 AGCD01026394;GBDF01280622;XR_261196 MODEL 8972022 protein-coding Pigq phosphatidylinositol glycan anchor biosynthesis class Q ENCODES a protein that exhibits phosphatidylinositol N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); Developmental Disabilities (ortholog); epilepsy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog) NW_004955442 16620009 16635308 - 102025181 AGCD01037904;AGCD01037905;GBDK01238495;XM_005391636;XM_013517847;XM_013517848;XM_013517849 XP_005391693;XP_013373301;XP_013373302;XP_013373303 MODEL 8725896 ncrna LOC102029310 uncharacterized LOC102029310 NW_004955424 23714057 23727836 + 102029310 AGCD01025018;GBDF01235866;XR_261105 MODEL 10322050 ncrna LOC106146527 uncharacterized LOC106146527 NW_004955483 6442361 6563622 + 106146527 AGCD01057776;AGCD01057777;AGCD01057778;AGCD01057779;AGCD01057780;AGCD01057781;AGCD01057782;AGCD01057783;GBDJ01111240;XR_001231006 MODEL 8929991 pseudo LOC102009965 high mobility group nucleosome-binding domain-containing protein 3 pseudogene NW_004955497 1469748 1473082 - 102009965 AGCD01062462;XM_005406365 MODEL 8757922 protein-coding LOC102026900 olfactory receptor 4A47-like NW_004955511 341989 342892 - 102026900 AGCD01066328;XM_013506409 XP_013361863 MODEL 8794629 protein-coding Spag4 sperm associated antigen 4 ENCODES a protein that exhibits identical protein binding (ortholog); FOUND IN microtubule (ortholog) NW_004955422 25840302 25844787 - 102009071 AGCD01023269;GBDF01000367;XM_005384785;XM_005384788 XP_005384842;XP_005384845 MODEL 8971411 protein-coding ND1 NADH dehydrogenase subunit 1 MT 2722 3679 + 15822218 JX312692 AFQ55777;YP_008080745 REVIEWED 8890267 pseudo LOC102003061 protein tilB homolog NW_004955435 18116016 18118858 - 102003061 AGCD01033389 MODEL 8814219 ncrna LOC102007282 uncharacterized LOC102007282 NW_004955442 18390450 18391001 - 102007282 AGCD01038005;GBDK01116847;XR_001235431 MODEL 8817419 ncrna LOC102015314 uncharacterized LOC102015314 NW_004955416 14878846 14890874 - 102015314 AGCD01017286;GBCQ01113980;XR_260386 MODEL 9037520 protein-coding Satb2 SATB homeobox 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); histone deacetylase binding (ortholog); INVOLVED IN cartilage development (ortholog); chromatin remodeling (ortholog); embryonic pattern specification (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); cerebellar ataxia (ortholog); cleft palate (ortholog); FOUND IN histone deacetylase complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955403 1663676 1811088 + 102010009 AGCD01001724;AGCD01001725;GBCE01064967;XM_013511972 XP_013367426 MODEL 39133691 misc_rna Telomerase-vert Vertebrate telomerase RNA 9035646 protein-coding Spry3 sprouty RTK signaling antagonist 3 INVOLVED IN negative regulation of ERK1 and ERK2 cascade (ortholog); negative regulation of MAPK cascade (ortholog); negative regulation of neuron projection arborization (ortholog); ASSOCIATED WITH Ependymomas (ortholog) NW_004955594 151117 158627 - 102022244 AGCD01076418;XM_005414640;XM_005414641 XP_005414697;XP_005414698 MODEL 9026209 protein-coding Ido2 indoleamine 2,3-dioxygenase 2 ENCODES a protein that exhibits indoleamine 2,3-dioxygenase activity (ortholog); INVOLVED IN L-tryptophan catabolic process (ortholog); PARTICIPATES IN kynurenine metabolic pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Chlamydia pneumonia (ortholog); Endotoxemia (ortholog); FOUND IN cytoplasm (ortholog) NW_004955536 2894410 2938862 - 102018023 AGCD01070804;AGCD01070805;AGCD01070806;GBCQ01095138;XM_013507732 XP_013363186 MODEL 8772556 ncrna LOC102007285 uncharacterized LOC102007285 NW_004955447 3220418 3236619 + 102007285 AGCD01040582;GBCQ01008302;XR_262410 MODEL 9044312 protein-coding LOC102008819 glutathione S-transferase theta-4-like NW_004955455 8339972 8366449 - 102008819 AGCD01045887;AGCD01045888;GBBH01060604;XM_005396410;XM_005396411;XM_005396412;XM_013520443 XP_005396467;XP_005396468;XP_005396469;XP_013375897 MODEL 8957830 protein-coding LOC102006191 zinc finger protein 449-like NW_004955602 489329 501914 + 102006191 AGCD01076788;AGCD01076789;XM_013510075 XP_013365529 MODEL 8797788 protein-coding Wtap WT1 associated protein ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mRNA processing (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); FOUND IN cytoplasm (ortholog); nuclear membrane (ortholog); nuclear speck (ortholog) NW_004955439 21149970 21174479 - 102017706 AGCD01036142;AGCD01036143;GBCE01054140;GBDJ01127571;XM_013517328 XP_013372782 MODEL 8743330 protein-coding Erbb3 erb-b2 receptor tyrosine kinase 3 ENCODES a protein that exhibits ErbB-3 class receptor binding (ortholog); growth factor binding (ortholog); identical protein binding (ortholog); INVOLVED IN axonogenesis (ortholog); cell surface receptor protein tyrosine kinase signaling pathway (ortholog); cellular response to insulin stimulus (ortholog); PARTICIPATES IN angiotensin II signaling pathway via AT2 receptor; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH amblyopia (ortholog); Breast Neoplasms (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN apical part of cell; apical plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955458 3683126 3701752 + 102028937 AGCD01047336;AGCD01047337;GBBH01093140;GBDJ01015857;XM_005397284 XP_005397341 MODEL 8923122 ncrna LOC102023779 uncharacterized LOC102023779 NW_004955458 3513180 3516126 + 102023779 AGCD01047313;AGCD01047314;GBDF01187994;XR_262971 MODEL 8985070 protein-coding Bex3 brain expressed X-linked 3 ENCODES a protein that exhibits death receptor binding (ortholog); identical protein binding (ortholog); molecular function inhibitor activity (ortholog); INVOLVED IN extrinsic apoptotic signaling pathway via death domain receptors (ortholog); negative regulation of protein ubiquitination (ortholog); ASSOCIATED WITH Experimental Seizures (ortholog); glaucoma (ortholog); transient cerebral ischemia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955548 526844 528406 + 102025517 AGCD01072333;GBCE01053102;XM_005411988;XM_005411989;XM_005411990;XM_005411991 XP_005412045;XP_005412046;XP_005412047;XP_005412048 MODEL 10184994 ncrna LOC106150059 uncharacterized LOC106150059 NW_004955463 5329698 5357309 + 106150059 AGCD01049638;GBDF01014914;XR_001236630 MODEL 8836264 pseudo LOC102012334 60S ribosomal protein L21 pseudogene NW_004955422 13359228 13359730 + 102012334 AGCD01022822;XM_005384951 MODEL 8807977 protein-coding Lamp3 lysosome associated membrane protein 3 INVOLVED IN lipid metabolic process (ortholog); negative regulation of proteasomal protein catabolic process (ortholog); positive regulation of gene expression (ortholog); ASSOCIATED WITH Human Influenza (ortholog); FOUND IN alveolar lamellar body membrane (ortholog); cell surface (ortholog); cytoplasmic vesicle membrane (ortholog) NW_004955420 24155793 24185366 + 102005941 AGCD01021276;AGCD01021277;AGCD01021278;AGCD01021279;AGCD01021280;AGCD01021281;AGCD01021282;GBDK01015482;XM_005383369;XM_005383370;XM_005383371 XP_005383426;XP_005383427;XP_005383428 MODEL 9030792 protein-coding LOC102024059 CD209 antigen-like protein E NW_004955563 1520908 1536722 + 102024059 AGCD01074151;AGCD01074152;GBDJ01280070;XM_005413157;XM_013509180;XM_013509181;XM_013509182 XP_005413214;XP_013364634;XP_013364635;XP_013364636 MODEL 10194762 protein-coding LOC106146396 putative DMBT1-like protein NW_004955477 939640 965961 + 106146396 AGCD01055497;XM_013503020 XP_013358474 MODEL 8971214 protein-coding Pigr polymeric immunoglobulin receptor ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); polymeric immunoglobulin binding (ortholog); polymeric immunoglobulin receptor activity (ortholog); INVOLVED IN detection of chemical stimulus involved in sensory perception of bitter taste (ortholog); epidermal growth factor receptor signaling pathway (ortholog); Fc receptor signaling pathway (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH IgA glomerulonephritis (ortholog); Stomach Neoplasms (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog); recycling endosome membrane (ortholog) NW_004955406 42456450 42474489 - 102023664 AGCD01006708;GBCQ01039929;XM_005375408 XP_005375465 MODEL 39133537 snrna U4 U4 spliceosomal RNA 8936712 protein-coding LOC102027589 uncharacterized LOC102027589 NW_004955448 17081131 17114488 + 102027589 AGCD01041711;GBDF01042919;XM_013518596;XM_013518597 XP_013374050;XP_013374051 MODEL 8866135 protein-coding Tmem98 transmembrane protein 98 INVOLVED IN negative regulation of myelination (ortholog); negative regulation of oligodendrocyte differentiation (ortholog); negative regulation of protein localization to nucleus (ortholog); ASSOCIATED WITH genetic disease (ortholog); Nanophthalmos 4 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); extracellular exosome (ortholog) NW_004955481 7788066 7797433 + 102028537 AGCD01057077;GBCQ01004757;GBDF01110957;XM_005402830 XP_005402887 MODEL 8913713 ncrna LOC102026549 uncharacterized LOC102026549 NW_004955425 25428451 25464177 + 102026549 AGCD01025917;AGCD01025918;AGCD01025919;XR_261171 MODEL 10230953 ncrna LOC106146949 uncharacterized LOC106146949 NW_004955506 5742968 5745211 - 106146949 AGCD01065386;GBDF01176924;XR_001231602 MODEL 8996396 protein-coding Klhl34 kelch like family member 34 NW_004955509 1985511 1990569 - 102009406 AGCD01065985;XM_005407819 XP_005407876 MODEL 8787326 protein-coding LOC102025135 epithelial chloride channel protein-like NW_004955423 7433747 7456786 - 102025135 AGCD01023601;AGCD01023602;AGCD01023603;GBDF01286325;XM_005385357 XP_005385414 MODEL 8823610 protein-coding Pfn3 profilin 3 NW_004955408 29642186 29642993 - 102025877 AGCD01008765;GBDF01044887;XM_005376434 XP_005376491 MODEL 8911051 trna trnC(gca) tRNA-Cys MT 5191 5257 - 15822223 8743996 ncrna LOC102004433 uncharacterized LOC102004433 NW_004955446 7583181 7605662 - 102004433 AGCD01040125;AGCD01040126;GBCQ01106414;XR_001235672;XR_001235673;XR_001235674;XR_001235675;XR_001235676;XR_001235677;XR_001235678;XR_001235679;XR_001235680;XR_262387 MODEL 8717012 protein-coding LOC102025486 taste receptor type 2 member 1-like NW_004955504 6894085 6897218 - 102025486 AGCD01064930;XM_005407093 XP_005407150 MODEL 9067949 protein-coding LOC102003062 vomeronasal type-2 receptor 116-like NW_004955532 118728 136794 + 102003062 AGCD01070099;AGCD01070100;XM_013507568 XP_013363022 MODEL 8930147 protein-coding Shank3 SH3 and multiple ankyrin repeat domains 3 ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); identical protein binding (ortholog); ionotropic glutamate receptor binding (ortholog); INVOLVED IN adult behavior (ortholog); AMPA glutamate receptor clustering (ortholog); associative learning (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal recessive intellectual developmental disorder 37 (ortholog); FOUND IN ciliary membrane (ortholog); glutamatergic synapse (ortholog); neuron projection (ortholog) NW_004955413 33660025 33714649 + 102015943 AGCD01014686;AGCD01014687;AGCD01014688;GBDI01163328;GBDK01181044;XM_005379674 XP_005379731 MODEL 8893065 ncrna LOC102011940 uncharacterized LOC102011940 NW_004955403 54668718 54673281 + 102011940 AGCD01003101;GBDF01280593;XR_001234182;XR_001234183 MODEL 39131959 snorna SNORD116 Small nucleolar RNA SNORD116 8950239 protein-coding LOC102018007 unconventional myosin-XVB-like NW_004955506 6612784 6644900 - 102018007 AGCD01065432;GBCE01126793;GBDI01245097;XM_005407496 XP_005407553 MODEL 10255175 ncrna LOC106148044 uncharacterized LOC106148044 NW_004955414 6143667 6152366 - 106148044 AGCD01014910;GBCE01130148;XR_001233164 MODEL 10285532 ncrna LOC106146670 uncharacterized LOC106146670 NW_004955407 35299138 35306008 + 106146670 AGCD01007736;GBDJ01055373;XR_001231214 MODEL 9026467 protein-coding LOC102009968 translation initiation factor IF-2-like NW_004955426 21666851 21667753 - 102009968 AGCD01026595;XM_005386266 XP_005386323 MODEL 8766518 protein-coding LOC102019548 olfactory receptor 2G3-like NW_004955581 848998 850370 + 102019548 AGCD01075698;XM_005414255 XP_005414312 MODEL 8807038 ncrna LOC102026902 uncharacterized LOC102026902 NW_004955513 3878651 3880853 + 102026902 AGCD01066912;GBDF01077155;XR_264469;XR_264470 MODEL 10252848 protein-coding LOC106146528 zinc finger protein 709-like NW_004955483 44973 64132 + 106146528 AGCD01057594;AGCD01057595;XM_013503760 XP_013359214 MODEL 8959863 protein-coding Slc26a10p Solute carrier family 26 member 10 NW_004955458 5343188 5352194 + 102009151 AGCD01047477;AGCD01047478;AGCD01047479;AGCD01047480;GBDI01004613;XM_005397408;XM_013520907;XM_013520908 XP_005397465;XP_013376361;XP_013376362 MODEL 8930882 protein-coding Erbb4 erb-b2 receptor tyrosine kinase 4 ENCODES a protein that exhibits epidermal growth factor receptor activity (ortholog); epidermal growth factor receptor binding (ortholog); GABA receptor binding (ortholog); INVOLVED IN cardiac muscle tissue regeneration (ortholog); cell fate commitment (ortholog); cell migration (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH amblyopia (ortholog); amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 10 (ortholog); FOUND IN basolateral plasma membrane (ortholog); caveola (ortholog); dendrite (ortholog) NW_004955457 3177905 4236152 + 102026721 AGCD01046765;AGCD01046766;AGCD01046767;AGCD01046768;AGCD01046769;AGCD01046770;AGCD01046771;AGCD01046772;AGCD01046773;AGCD01046774;AGCD01046775;AGCD01046776;AGCD01046777;AGCD01046778;AGCD01046779;AGCD01046780;AGCD01046781;AGCD01046782;AGCD01046783;AGCD01046784;AGCD01046785;AGCD01046786;AGCD01046787;GBCQ01117703;GBCQ01117704;XM_005396937;XM_005396938;XM_005396939;XM_005396940;XM_013520736 XP_005396994;XP_005396995;XP_005396996;XP_005396997;XP_013376190 MODEL 8905333 ncrna LOC102021336 uncharacterized LOC102021336 NW_004955415 19026977 19033625 - 102021336 AGCD01016460;GBDF01278713;XR_260302 MODEL 8746468 protein-coding LOC102018360 maestro heat-like repeat family member 5 NW_004955454 1331678 1366820 - 102018360 AGCD01044968;GBDI01324363;XM_013520086;XM_013520087;XM_013520088;XM_013520089;XM_013520090 XP_013375540;XP_013375541;XP_013375542;XP_013375543;XP_013375544 MODEL 8743130 ncrna LOC102020533 uncharacterized LOC102020533 NW_004955460 4920865 4924481 - 102020533 AGCD01048444;GBDF01304791;XR_263030 MODEL 8757940 protein-coding LOC102027590 putative olfactory receptor 2I1 NW_004955583 23636 27501 + 102027590 AGCD01075790;AGCD01075791;GBDF01058018;XM_013509774 XP_013365228 MODEL 9031928 protein-coding P2rx6 purinergic receptor P2X 6 ENCODES a protein that exhibits extracellularly ATP-gated monoatomic cation channel activity (ortholog); protein-containing complex binding (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); dendritic spine (ortholog) NW_004955442 19263544 19272231 - 102021180 AGCD01038045;GBDF01013503;XM_005391819;XM_013518015 XP_005391876;XP_013373469 MODEL 10215732 protein-coding LOC106146262 olfactory receptor 5B3-like NW_004955511 3155683 3156606 - 106146262 AGCD01066445;XM_013506392 XP_013361846 MODEL 8743365 pseudo LOC102029322 survival of motor neuron-related-splicing factor 30 pseudogene NW_004955433 11012394 11014938 - 102029322 AGCD01031643 MODEL 8780673 protein-coding LOC102006193 PRAME family member 22-like NW_004955615 261822 264278 + 102006193 AGCD01077252;XM_013510140 XP_013365594 MODEL 8790979 pseudo LOC102030018 dnaJ homolog subfamily B member 14 pseudogene NW_004955581 1150307 1151075 + 102030018 AGCD01075715 MODEL 8888669 trna trnD(gtc) tRNA-Asp MT 6950 7017 + 15822226 8855913 ncrna LOC102005833 uncharacterized LOC102005833 NW_004955516 4052159 4191251 + 102005833 AGCD01067516;AGCD01067517;AGCD01067518;AGCD01067519;GBBH01058464;XR_264537 MODEL 10115508 protein-coding LOC106149240 uncharacterized LOC106149240 NW_004955441 13737303 13749751 - 106149240 AGCD01037160;XM_013517513 XP_013372967 MODEL 8861321 protein-coding LOC102004443 uncharacterized LOC102004443 NW_004955450 6923696 6931369 + 102004443 AGCD01042529;GBDK01381035;XM_005393876 XP_005393933 MODEL 10351449 ncrna LOC106150060 uncharacterized LOC106150060 NW_004955463 3999310 4000215 + 106150060 AGCD01049600;GBDF01236154;XR_001236631 MODEL 9024400 protein-coding LOC102023780 aromatase ENCODES a protein that exhibits aromatase activity (ortholog); estrogen 2-hydroxylase activity (ortholog); heme binding (ortholog); INVOLVED IN adrenal gland development (ortholog); androgen catabolic process (ortholog); androgen metabolic process (ortholog); PARTICIPATES IN aromatase inhibitor pathway; estradiol biosynthetic pathway; steroid hormone biosynthetic pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Alzheimer's disease (ortholog); amenorrhea (ortholog); FOUND IN axon terminus (ortholog); dendritic spine (ortholog); endoplasmic reticulum (ortholog) NW_004955409 3198622 3313072 + 102023780 AGCD01009236;AGCD01009237;AGCD01009238;AGCD01009239;GBDF01304411;XM_005376647;XM_005376648;XM_005376649;XM_005376650;XM_005376651;XM_005376652 XP_005376704;XP_005376705;XP_005376706;XP_005376707;XP_005376708;XP_005376709 MODEL 8905416 protein-coding LOC102024063 neutrophil gelatinase-associated lipocalin-like NW_004955570 492312 495847 + 102024063 AGCD01074730;XM_005413637 XP_005413694 MODEL 8968914 pseudo LOC102015317 ATP-dependent RNA helicase DDX50 pseudogene NW_004955417 13310137 13312256 + 102015317 AGCD01018175 MODEL 8733166 protein-coding Lamp5 lysosomal associated membrane protein family member 5 INVOLVED IN presynaptic modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH congenital myasthenic syndrome 18 (ortholog); developmental and epileptic encephalopathy 12 (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); dendrite membrane (ortholog); early endosome membrane (ortholog) NW_004955415 19488533 19502599 + 102022494 AGCD01016470;GBDJ01037029;XM_005380867 XP_005380924 MODEL 8955256 protein-coding LOC102012336 guanylate-binding protein 4-like NW_004955423 4956079 4970449 + 102012336 AGCD01023550;GBDK01006373;XM_013514414;XM_013514415 XP_013369868;XP_013369869 MODEL 10353882 pseudo LOC106146397 histone H3.3C-like NW_004955477 2033025 2049055 + 106146397 AGCD01055516 MODEL 9023168 protein-coding Spry4 sprouty RTK signaling antagonist 4 ENCODES a protein that exhibits protein kinase inhibitor activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); negative regulation of MAP kinase activity (ortholog); negative regulation of substrate adhesion-dependent cell spreading (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); amenorrhea (ortholog); disorder of sexual development (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955415 11489439 11504247 + 102027401 AGCD01016163;GBBH01086221;XM_005380708;XM_005380709 XP_005380765;XP_005380766 MODEL 9062220 ncrna LOC102009188 uncharacterized LOC102009188 NW_004955420 29161260 29164099 + 102009188 AGCD01021493;GBDJ01119670;XR_260772 MODEL 8841194 pseudo LOC102028234 60S ribosomal protein L12-like NW_004955438 7370077 7370614 - 102028234 AGCD01035130 MODEL 10332450 protein-coding LOC106146950 uncharacterized LOC106146950 NW_004955407 41197166 41202561 + 106146950 AGCD01007861;XM_013506097 XP_013361551 MODEL 8764736 protein-coding Klhl35 kelch like family member 35 NW_004955414 16421664 16436019 + 102025564 AGCD01015213;AGCD01015214;GBBH01127910;GBDF01209067;XM_005379886 XP_005379943 MODEL 8781685 ncrna LOC102021338 uncharacterized LOC102021338 NW_004955478 2711040 2718852 + 102021338 AGCD01055802;GBDF01209257;XR_001230835;XR_263687 MODEL 8708820 protein-coding LOC102025137 melanoma-associated antigen 10-like NW_004955498 4797137 4797895 + 102025137 AGCD01063020;GBDF01246816;XM_005406487 XP_005406544 MODEL 8742575 protein-coding Pnma2 PNMA family member 2 NW_004955403 49183280 49184855 - 102027806 AGCD01002935;XM_005415298 XP_005415355 MODEL 8853252 protein-coding ND2 NADH dehydrogenase subunit 2 MT 3887 4930 + 15822220 JX312692 AFQ55778;YP_008080746 REVIEWED 10160289 ncrna LOC106148045 uncharacterized LOC106148045 NW_004955414 6152443 6157128 - 106148045 AGCD01014910;GBCE01066313;XR_001233165 MODEL 39133690 misc_rna Telomerase-vert Vertebrate telomerase RNA 9023252 protein-coding Pigs phosphatidylinositol glycan anchor biosynthesis class S INVOLVED IN attachment of GPI anchor to protein (ortholog); GPI anchored protein biosynthesis (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 95 (ortholog); genetic disease (ortholog); FOUND IN GPI-anchor transamidase complex (ortholog) NW_004955481 4583119 4597091 + 102003133 AGCD01056944;GBDF01124484;XM_005402749 XP_005402806 MODEL 39133538 snrna U4 U4 spliceosomal RNA 8816086 pseudo LOC102026553 glutathione peroxidase 1-like NW_004955427 24722422 24722956 + 102026553 AGCD01027518 MODEL 10358969 pseudo LOC106146529 small nuclear ribonucleoprotein E pseudogene NW_004955483 5175498 5176105 - 106146529 AGCD01057756 MODEL 8959704 protein-coding LOC102003392 WAP four-disulfide core domain protein 10A NW_004955445 11634309 11635726 - 102003392 AGCD01039708;GBDF01230954;XM_005392420 XP_005392477 MODEL 8709119 protein-coding LOC102007286 prolactin-like NW_004955576 959769 969369 + 102007286 AGCD01075349;GBDK01091111;XM_005413940 XP_005413997 MODEL 8768067 protein-coding Pfn4 profilin family member 4 INVOLVED IN acrosome assembly (ortholog); flagellated sperm motility (ortholog); manchette assembly (ortholog); FOUND IN cytoplasm (ortholog) NW_004955469 6299451 6306564 - 102026627 AGCD01052379;AGCD01052380;GBDF01083804;XM_005400382;XM_005400383;XM_005400384 XP_005400439;XP_005400440;XP_005400441 MODEL 8920596 protein-coding Slc26a11 solute carrier family 26 member 11 ENCODES a protein that exhibits chloride channel activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); monoatomic anion transmembrane transporter activity (ortholog); INVOLVED IN sulfate transmembrane transport (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); endoplasmic reticulum (ortholog) NW_004955506 2683637 2701889 - 102020467 AGCD01065301;GBCE01057227;XM_005407328;XM_013505989;XM_013505990 XP_005407385;XP_013361443;XP_013361444 MODEL 8712869 pseudo LOC102018362 U2 snRNP-associated SURP motif-containing protein pseudogene NW_004955406 30253163 30256294 - 102018362 AGCD01006363 MODEL 8873941 pseudo LOC102020535 ribonucleoside-diphosphate reductase subunit M2-like NW_004955460 10653679 10657934 - 102020535 AGCD01048599 MODEL 39131958 snorna SNORD116 Small nucleolar RNA SNORD116 10068739 protein-coding LOC106146264 olfactory receptor 5B2-like NW_004955511 3219668 3220615 - 106146264 AGCD01066450;XM_013506386 XP_013361840 MODEL 8953327 protein-coding Spag5 sperm associated antigen 5 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN chromosome segregation (ortholog); establishment of spindle orientation (ortholog); mitotic sister chromatid segregation (ortholog); ASSOCIATED WITH cervical cancer (ortholog); COVID-19 (ortholog); Spontaneous Abortions (ortholog); FOUND IN centriolar satellite (ortholog); ciliary basal body (ortholog); ciliary rootlet (ortholog) NW_004955481 4558748 4576320 + 102029625 AGCD01056944;GBDF01004685;XM_005402745;XM_005402746 XP_005402802;XP_005402803 MODEL 9028988 protein-coding P2rx7 purinergic receptor P2X 7 ENCODES a protein that exhibits ATP binding (ortholog); channel activity (ortholog); copper ion binding (ortholog); INVOLVED IN apoptotic signaling pathway (ortholog); ATP export (ortholog); bleb assembly (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); atrial fibrillation (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); FOUND IN bleb (ortholog); cell-cell junction (ortholog); cytoplasm (ortholog) NW_004955482 7048674 7087525 - 102019393 AGCD01057436;AGCD01057437;GBDK01231630;XM_005403137;XM_005403138 XP_005403194;XP_005403195 MODEL 8874890 protein-coding LOC102018009 anthrax toxin receptor-like NW_004955510 6344262 6376039 + 102018009 AGCD01066305;AGCD01066306;GBDJ01209437;XM_005407924;XM_005407925;XM_005407926;XM_005407927;XM_013506336 XP_005407981;XP_005407982;XP_005407983;XP_005407984;XP_013361790 MODEL 8787664 ncrna LOC102006194 uncharacterized LOC102006194 NW_004956032 1817 5572 + 102006194 AGCD01078914;GBBH01223549;XR_265202 MODEL 9010182 trna trnE(ttc) tRNA-Glu MT 14092 14160 - 15822214 8829046 pseudo LOC102019549 small ubiquitin-related modifier 2 pseudogene NW_004955402 7777066 7777353 - 102019549 AGCD01000185 MODEL 8757149 ncrna LOC102026903 uncharacterized LOC102026903 NW_004955432 14652431 14653614 - 102026903 AGCD01031044;GBCE01094323;XR_261528 MODEL 8714280 protein-coding Ids iduronate 2-sulfatase ENCODES a protein that exhibits calcium ion binding (ortholog); iduronate-2-sulfatase activity (ortholog); sulfuric ester hydrolase activity (ortholog); INVOLVED IN dermatan sulfate proteoglycan catabolic process (ortholog); glycosaminoglycan catabolic process (ortholog); heparan sulfate proteoglycan catabolic process (ortholog); ASSOCIATED WITH Epidermolysis Bullosa Simplex 5D with Nail Dystrophy (ortholog); genetic disease (ortholog); Lung Neoplasms (ortholog); FOUND IN lysosomal lumen (ortholog); lysosome (ortholog) NW_004955498 1863002 1886720 - 102021366 AGCD01062752;GBCE01115350;XM_005406397 XP_005406454 MODEL 10114810 ncrna LOC106150061 uncharacterized LOC106150061 NW_004955463 12747513 12763216 + 106150061 AGCD01049858;XR_001236632 MODEL 9032024 protein-coding LOC102023781 olfactory receptor 6C2-like NW_004955458 3010329 3011258 + 102023781 AGCD01047266;GBDF01110776;XM_005397507 XP_005397564 MODEL 8812593 protein-coding Wtip WT1 interacting protein ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN miRNA-mediated gene silencing by inhibition of translation (ortholog); miRNA-mediated post-transcriptional gene silencing (ortholog); negative regulation of hippo signaling (ortholog); FOUND IN P-body (ortholog) NW_004955468 4082681 4106265 + 102005130 AGCD01051886;AGCD01051887;AGCD01051888;AGCD01051889;AGCD01051890;GBCE01095541;GBDI01225629;XM_013522520 XP_013377974 MODEL 9042858 ncrna LOC102003065 uncharacterized LOC102003065 NW_004955437 17589746 17591956 + 102003065 AGCD01034751;GBDF01287696;XR_261886 MODEL 8919443 protein-coding Lamtor1 late endosomal/lysosomal adaptor, MAPK and MTOR activator 1 ENCODES a protein that exhibits GTPase binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to nutrient levels (ortholog); cholesterol homeostasis (ortholog); PARTICIPATES IN mTOR signaling pathway; FOUND IN FNIP-folliculin RagC/D GAP (ortholog); late endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955414 19228615 19235523 + 102029849 AGCD01015308;GBBH01062278;XM_005380006 XP_005380063 MODEL 9046328 pseudo LOC102025487 thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 pseudogene NW_004955505 1165159 1166107 - 102025487 AGCD01064967 MODEL 8803642 protein-coding Bfar bifunctional apoptosis regulator ENCODES a protein that exhibits caspase binding (ortholog); protein-macromolecule adaptor activity (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of IRE1-mediated unfolded protein response (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955442 4229236 4255623 - 102016103 AGCD01037524;AGCD01037525;GBBH01140244;XM_005391133 XP_005391190 MODEL 8741246 protein-coding Sharpin SHANK associated RH domain interactor ENCODES a protein that exhibits identical protein binding (ortholog); polyubiquitin modification-dependent protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN apoptotic nuclear changes (ortholog); defense response to bacterium (ortholog); epidermis development (ortholog); PARTICIPATES IN integrin mediated signaling pathway; nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH atopic dermatitis (ortholog); AUTOINFLAMMATION WITH EPISODIC FEVER AND IMMUNE DYSREGULATION (ortholog); dermatitis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955454 2761725 2765929 - 102025652 AGCD01045033;GBDK01082298;XM_005395857;XR_001236235 XP_005395914 MODEL 8991500 protein-coding LOC102009190 uncharacterized LOC102009190 NW_004955420 26585304 26590726 - 102009190 AGCD01021418;GBBH01189737;XM_013513347 XP_013368801 MODEL 8886082 ncrna LOC102029323 uncharacterized LOC102029323 NW_004955435 4413889 4414787 + 102029323 AGCD01032830;XR_261660 MODEL 10289143 ncrna LOC106146671 uncharacterized LOC106146671 NW_004955491 8751357 8754830 + 106146671 AGCD01060620;GBDI01152823;XR_001231212 MODEL 8735895 protein-coding Sav1 salvador family WW domain containing protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein serine/threonine kinase activator activity (ortholog); transcription regulator activator activity (ortholog); INVOLVED IN hair follicle development (ortholog); hippo signaling (ortholog); intestinal epithelial cell differentiation (ortholog); ASSOCIATED WITH colonic disease (ortholog); hepatocellular carcinoma (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955409 12200721 12221520 + 102021738 AGCD01009541;GBCE01118906;GBDK01129269;XM_005376820 XP_005376877 MODEL 10162643 pseudo LOC106149241 prostaglandin E synthase 3-like NW_004955441 292719 293479 - 106149241 AGCD01036699 MODEL 8750352 protein-coding LOC102009970 olfactory receptor 5M10-like NW_004955511 1738489 1739436 + 102009970 AGCD01066378;XM_005407975 XP_005408032 MODEL 9027856 protein-coding Slc26a2 solute carrier family 26 member 2 ENCODES a protein that exhibits oxalate transmembrane transporter activity (ortholog); solute:inorganic anion antiporter activity (ortholog); sulfate transmembrane transporter activity (ortholog); INVOLVED IN chondrocyte differentiation (ortholog); chondrocyte proliferation (ortholog); oxalate transport (ortholog); ASSOCIATED WITH 3MC syndrome 2 (ortholog); achondrogenesis (ortholog); achondrogenesis type IB (ortholog); FOUND IN apical plasma membrane (ortholog); microvillus membrane (ortholog); plasma membrane (ortholog) NW_004955415 4540302 4556360 - 102019592 AGCD01015974;GBDJ01124708;XM_005380589;XM_005380590;XM_013512336 XP_005380646;XP_005380647;XP_013367790 MODEL 8792797 protein-coding Tmem9b TMEM9 domain family member B INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); FOUND IN early endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955414 24695541 24710692 - 102025677 AGCD01015553;GBCE01031427;XM_005380250;XM_013512074 XP_005380307;XP_013367528 MODEL 8967243 protein-coding LOC102004444 beta-defensin 1-like ENCODES a protein that exhibits double-stranded DNA binding; CCR6 chemokine receptor binding (ortholog); identical protein binding (ortholog); INVOLVED IN killing of cells of another organism; antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); calcium-mediated signaling (ortholog); ASSOCIATED WITH otitis media; Actinobacillus Infections (ortholog); asthma (ortholog); FOUND IN extracellular region (ortholog); membrane (ortholog); microvesicle (ortholog) NW_004955403 53643328 53644361 + 102004444 AGCD01003067;AY128668;GBDI01106599;XM_005373833 AAM97293;P83943;XP_005373890 MODEL 8811856 trna trnF(gaa) tRNA-Phe MT 1 66 + 15822237 9049882 protein-coding Erbin erbb2 interacting protein ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN cellular response to tumor necrosis factor (ortholog); negative regulation of monocyte chemotactic protein-1 production (ortholog); negative regulation of nucleotide-binding oligomerization domain containing 2 signaling pathway (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); prostate cancer (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell junction (ortholog); cytoplasm (ortholog) NW_004955446 3046268 3151796 - 102017075 AGCD01039998;AGCD01039999;AGCD01040000;AGCD01040001;AGCD01040002;GBBH01209360;GBDJ01086651;XM_013518424;XM_013518425;XM_013518427;XM_013518428;XM_013518429;XM_013518430;XM_013518431;XM_013518432 XP_013373878;XP_013373879;XP_013373881;XP_013373882;XP_013373883;XP_013373884;XP_013373885;XP_013373886 MODEL 10357855 protein-coding LOC106146398 transcription initiation factor TFIID subunit 4-like NW_004955406 249241 250323 + 106146398 AGCD01005614;XM_013503023 XP_013358477 MODEL 8768093 pseudo LOC102027593 high mobility group protein B2 pseudogene NW_004955590 848624 849197 - 102027593 AGCD01076224 MODEL 8848103 protein-coding Ten1 TEN1 subunit of CST complex ENCODES a protein that exhibits telomeric repeat DNA binding (ortholog); INVOLVED IN negative regulation of telomere maintenance via telomerase (ortholog); ASSOCIATED WITH dyskeratosis congenita (ortholog); FOUND IN chromosome, telomeric region (ortholog); CST complex (ortholog); nucleoplasm (ortholog) NW_004955506 6252146 6286675 - 102008441 AGCD01065405;AGCD01065406;AGCD01065407;AGCD01065408;AGCD01065409;AGCD01065410;AGCD01065411;GBDF01011329;XM_013505995 XP_013361449 MODEL 8866121 protein-coding LOC102028237 zinc finger protein 709-like NW_004955546 668624 694635 - 102028237 AGCD01072013;AGCD01072014;AGCD01072015;XM_005411753;XM_013508422;XM_013508423 XP_005411810;XP_013363876;XP_013363877 MODEL 10095887 protein-coding LOC102008821 uncharacterized LOC102008821 NW_004955455 6620069 6624760 + 102008821 AGCD01045802;XM_013520311 XP_013375765 MODEL 8919724 protein-coding Tmf1 TATA element modulatory factor 1 ENCODES a protein that exhibits nuclear androgen receptor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN acrosome assembly (ortholog); androgen receptor signaling pathway (ortholog); defense response to bacterium (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog); Prostatic Neoplasms (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955421 18810199 18837767 + 102013302 AGCD01022056;AGCD01022057;GBDF01004150;XM_005383813 XP_005383870 MODEL 9026064 pseudo LOC102030019 septin-7 pseudogene NW_004955449 17516676 17519119 - 102030019 AGCD01042259;AGCD01042260 MODEL 8929205 pseudo LOC102005835 transcription initiation factor TFIID subunit 2-like NW_004955433 1848991 1866778 - 102005835 AGCD01031371;AGCD01031372 MODEL 9063938 pseudo LOC102018363 60S ribosomal protein L36 pseudogene NW_004955454 3467514 3481312 + 102018363 AGCD01045080;AGCD01045081;AGCD01045082 MODEL 8861756 ncrna LOC102020537 uncharacterized LOC102020537 NW_004955410 17663904 17685639 + 102020537 AGCD01010991;GBCQ01087275;XR_259847 MODEL 8989272 protein-coding Klhl36 kelch like family member 36 ENCODES a protein that exhibits cullin family protein binding (ortholog) NW_004955541 205170 218943 + 102014711 AGCD01071347;GBCQ01059206;XM_005410963 XP_005411020 MODEL 8917079 protein-coding LOC102024075 protein mago nashi homolog NW_004955403 475609 476239 - 102024075 AGCD01001693;XM_005373213 XP_005373270 MODEL 9016377 pseudo LOC102026904 cyclin-G1 pseudogene NW_004955518 423918 431058 - 102026904 AGCD01067735 MODEL 8775736 protein-coding LOC102012342 uncharacterized LOC102012342 NW_004955504 2063804 2068813 - 102012342 AGCD01064853;GBDI01262175;GBDK01263929;XM_013505916 XP_013361370 MODEL 9054907 protein-coding Pigt phosphatidylinositol glycan anchor biosynthesis class T ENCODES a protein that exhibits GPI anchor binding (ortholog); INVOLVED IN attachment of GPI anchor to protein (ortholog); GPI anchored protein biosynthesis (ortholog); neuron apoptotic process (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); GPI-anchor transamidase complex (ortholog) NW_004955445 11916898 11925578 - 102005645 AGCD01039724;AGCD01039725;GBDF01046377;XM_005392426 XP_005392483 MODEL 8924754 protein-coding LOC102026556 olfactory receptor 5W2-like NW_004955511 709077 710009 - 102026556 AGCD01066339;XM_005407945 XP_005408002 MODEL 8792014 protein-coding LOC102015319 thioredoxin NW_004955419 16868816 16880245 + 102015319 AGCD01020127;AGCD01020128;GBDI01015857;XM_005382739;XM_005382740 XP_005382796;XP_005382797 MODEL 9046725 pseudo LOC102011943 allograft inflammatory factor 1 pseudogene NW_004955404 28664142 28664895 + 102011943 AGCD01003957;XM_005374142 MODEL 8954218 pseudo LOC102003393 zinc finger protein 14-like NW_004955569 1162650 1186999 - 102003393 AGCD01074643;XM_005413495 MODEL 10110073 protein-coding LOC106146951 uncharacterized LOC106146951 NW_004955407 42207496 42395082 + 106146951 AGCD01007887;AGCD01007888;AGCD01007889;AGCD01007890;AGCD01007891;GBDF01240951;XM_013506114 XP_013361568 MODEL 8838103 protein-coding Wwc1 WW and C2 domain containing 1 ENCODES a protein that exhibits kinase binding (ortholog); molecular adaptor activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN cell migration (ortholog); hippo signaling (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH malignant mesothelioma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955408 21362644 21529164 + 102010976 AGCD01008554;GBDJ01134962;GBDJ01134963;XM_005376298;XM_005376299 XP_005376355;XP_005376356 MODEL 8771607 protein-coding Pgam1 phosphoglycerate mutase 1 ENCODES a protein that exhibits bisphosphoglycerate mutase activity (ortholog); phosphoglycerate mutase activity (ortholog); protein kinase binding (ortholog); INVOLVED IN canonical glycolysis (ortholog); gluconeogenesis (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); neuronal cell body (ortholog) NW_004955507 3562513 3571400 + 102024486 AGCD01065631;GBDF01053157;XM_005407600 XP_005407657 MODEL 39133090 snorna SNORD116 Small nucleolar RNA SNORD116 9038745 protein-coding Pnmt phenylethanolamine N-methyltransferase ENCODES a protein that exhibits phenylethanolamine N-methyltransferase activity (ortholog); INVOLVED IN adrenal gland development (ortholog); cellular response to dexamethasone stimulus (ortholog); cellular response to growth factor stimulus (ortholog); PARTICIPATES IN alkaptonuria pathway; aromatic L-amino acid decarboxylase deficiency pathway; catecholamine biosynthetic pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Contusions (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); neuronal cell body (ortholog) NW_004955451 14414836 14417972 + 102028817 AGCD01043552;GBCB01077385;XM_005394315;XM_005394316 XP_005394372;XP_005394373 MODEL 9052457 protein-coding ND3 NADH dehydrogenase subunit 3 MT 9465 9810 + 15822229 JX312692 AFQ55784;YP_008080752 REVIEWED 8777928 protein-coding Spag6 sperm associated antigen 6 FOUND IN axoneme (ortholog); microtubule cytoskeleton (ortholog); sperm end piece (ortholog) NW_004955429 625601 662804 - 102024259 AGCD01028369;GBDI01128056;XM_005386859;XM_005386860;XM_013515392 XP_005386916;XP_005386917;XP_013370846 MODEL 10126970 ncrna LOC106148046 uncharacterized LOC106148046 NW_004955414 24954190 24959206 + 106148046 AGCD01015563;AGCD01015564;GBDJ01256433;XR_001233166 MODEL 8882996 protein-coding P2ry1 purinergic receptor P2Y1 ENCODES a protein that exhibits A1 adenosine receptor binding (ortholog); ADP binding (ortholog); ATP binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); blood vessel diameter maintenance (ortholog); cellular response to purine-containing compound (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); impotence (ortholog); thrombosis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cell body (ortholog) NW_004955448 4366706 4372626 + 102011488 AGCD01041344;GBDF01176463;XM_005393054 XP_005393111 MODEL 9031711 ncrna LOC102005842 uncharacterized LOC102005842 NW_004955439 2255721 2292358 + 102005842 AGCD01035638;AGCD01035639;AGCD01035640;GBBH01163336;XR_001235211;XR_001235212;XR_261967 MODEL 8935649 protein-coding LOC102006195 geranylgeranyl transferase type-2 subunit alpha-like NW_004957120 9 1764 + 102006195 AGCD01080516;GBBH01089051;GBCE01054026;XM_005415225 XP_005415282 MODEL 10335266 ncrna LOC106146530 uncharacterized LOC106146530 NW_004955407 15944002 15955592 - 106146530 AGCD01007201;GBDF01009904;XR_001231007;XR_001231008 MODEL 39133539 snrna U4 U4 spliceosomal RNA 8795904 protein-coding Saxo1 stabilizer of axonemal microtubules 1 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN cellular response to cold (ortholog); cold acclimation (ortholog); positive regulation of cilium assembly (ortholog); FOUND IN axonemal microtubule (ortholog); centriole (ortholog); ciliary basal body (ortholog) NW_004955434 21414937 21454901 - 102024607 AGCD01032628;GBDF01003678;XM_005388724;XM_013516288 XP_005388781;XP_013371742 MODEL 8707404 ncrna LOC102019550 uncharacterized LOC102019550 NW_004955402 26587384 26638965 + 102019550 AGCD01000682;GBDF01306098;XR_001236745;XR_259068 MODEL 10287534 ncrna LOC106146672 uncharacterized LOC106146672 NW_004955491 5350044 5367061 - 106146672 AGCD01060478;AGCD01060479;GBDF01162285;XR_001231213 MODEL 8941576 protein-coding Spryd3 SPRY domain containing 3 NW_004955458 347600 367264 - 102011179 AGCD01047120;AGCD01047121;AGCD01047122;GBDJ01025161;XM_005397141;XM_013520874 XP_005397198;XP_013376328 MODEL 9049118 protein-coding LOC102009973 olfactory receptor 10AG1-like NW_004955511 872782 873738 - 102009973 AGCD01066345;XM_005408215 XP_005408272 MODEL 8977477 protein-coding LOC102007292 uncharacterized protein C15orf26-like NW_004956049 3925 6331 - 102007292 AGCD01078945;GBBH01031873;GBDJ01352435;XM_013510219 XP_013365673 MODEL 8940189 protein-coding Idua alpha-L-iduronidase ENCODES a protein that exhibits L-iduronidase activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); adult walking behavior (ortholog); bone development (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); gastric ulcer (ortholog); genetic disease (ortholog); FOUND IN extracellular region (ortholog); lysosomal lumen (ortholog); lysosome (ortholog) NW_004955514 474830 488007 + 102011470 AGCD01067011;AGCD01067012;GBCE01171800;GBDJ01321944;XM_005408686 XP_005408743 MODEL 8769342 protein-coding LOC102023785 kinesin-like protein KIF19 NW_004955460 12881467 12915982 - 102023785 AGCD01048664;GBBH01028491;XM_005397970 XP_005398027 MODEL 9006859 ncrna LOC102003067 uncharacterized LOC102003067 NW_004955438 9649804 9652236 + 102003067 AGCD01035184;GBDF01148894;XR_261923 MODEL 9010649 pseudo LOC102025138 ribosome-recycling factor, mitochondrial pseudogene NW_004955424 15678952 15680946 - 102025138 AGCD01024722 MODEL 10338019 ncrna LOC106146399 uncharacterized LOC106146399 NW_004955477 2404580 2420655 - 106146399 AGCD01055522;GBDF01144484;XR_001230819 MODEL 8829279 protein-coding LOC102025490 olfactory receptor 1013-like NW_004955511 1819906 1820847 - 102025490 AGCD01066381;XM_013506376 XP_013361830 MODEL 9018174 protein-coding Lamtor2 late endosomal/lysosomal adaptor, MAPK and MTOR activator 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to nutrient levels (ortholog); fibroblast migration (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH Immunodeficiency due to Defect in MAPBP-Interacting Protein (ortholog); FOUND IN FNIP-folliculin RagC/D GAP (ortholog); late endosome (ortholog); lysosomal membrane (ortholog) NW_004955545 2237506 2242070 + 102018226 AGCD01071891;GBCE01030998;XM_005411645 XP_005411702 MODEL 8894049 protein-coding Pigu phosphatidylinositol glycan anchor biosynthesis class U ENCODES a protein that exhibits GPI anchor binding (ortholog); INVOLVED IN attachment of GPI anchor to protein (ortholog); GPI anchor biosynthetic process (ortholog); GPI anchored protein biosynthesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); Glycosylphosphatidylinositol Biosynthesis Defect 21 (ortholog); long QT syndrome (ortholog); FOUND IN GPI-anchor transamidase complex (ortholog); plasma membrane (ortholog) NW_004955422 26685060 26774261 + 102022399 AGCD01023296;AGCD01023297;AGCD01023298;AGCD01023299;AGCD01023300;AGCD01023301;GBDF01124039;XM_005384827 XP_005384884 MODEL 8726064 protein-coding Bfsp1 beaded filament structural protein 1 ENCODES a protein that exhibits structural constituent of eye lens (ortholog); INVOLVED IN cell maturation (ortholog); intermediate filament organization (ortholog); lens fiber cell development (ortholog); ASSOCIATED WITH cataract (ortholog); cataract 33 (ortholog); coloboma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); intermediate filament (ortholog) NW_004955415 26507381 26535545 - 102009495 AGCD01016596;AGCD01016597;AGCD01016598;GBCE01168540;XM_005380906;XM_013512110 XP_005380963;XP_013367564 MODEL 10085175 protein-coding LOC106146265 melanoma-associated antigen 11-like NW_004955498 4196126 4197028 - 106146265 AGCD01062973;GBDF01254448;XM_013505526 XP_013360980 MODEL 8800999 pseudo LOC102029326 uncharacterized LOC102029326 NW_004955529 2981073 2985713 + 102029326 AGCD01069776 MODEL 10256804 ncrna LOC106146952 uncharacterized LOC106146952 NW_004955506 629023 636749 + 106146952 AGCD01065234;GBBH01075961;XR_001231605 MODEL 8943123 protein-coding Shb SH2 domain containing adaptor protein B ENCODES a protein that exhibits phosphotyrosine residue binding (ortholog); signaling receptor complex adaptor activity (ortholog); INVOLVED IN B cell proliferation (ortholog); blood vessel development (ortholog); blood vessel morphogenesis (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; vascular endothelial growth factor signaling pathway; FOUND IN cytosol (ortholog) NW_004955419 28423354 28555948 + 102027856 AGCD01020464;AGCD01020465;GBCQ01070022;GBDJ01352611;XM_005382857 XP_005382914 MODEL 10214239 pseudo LOC106149242 E3 ubiquitin-protein ligase RNF125 pseudogene NW_004955441 6936381 6938677 + 106149242 AGCD01036945 MODEL 8948812 protein-coding Tenm1 teneurin transmembrane protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); ASSOCIATED WITH sensorineural hearing loss (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955473 9557822 10342007 + 102017229 AGCD01054075;AGCD01054076;AGCD01054077;AGCD01054078;AGCD01054079;AGCD01054080;AGCD01054081;AGCD01054082;AGCD01054083;AGCD01054084;AGCD01054085;AGCD01054086;AGCD01054087;AGCD01054088;AGCD01054089;AGCD01054090;AGCD01054091;AGCD01054092;AGCD01054093;GBCE01164533;XM_005401273 XP_005401330 MODEL 10381409 ncrna LOC106150062 uncharacterized LOC106150062 NW_004955463 6666855 6685480 - 106150062 AGCD01049689;AGCD01049690;AGCD01049691;XR_001236634 MODEL 8710773 pseudo LOC102024077 olfactory receptor-like protein OLF4 NW_004955626 120729 121640 + 102024077 AGCD01077468 MODEL 10211819 ncrna LOC106148047 uncharacterized LOC106148047 NW_004955414 26613889 26650380 + 106148047 AGCD01015647;AGCD01015648;AGCD01015649;AGCD01015650;GBDF01177596;XR_001233172;XR_001233173;XR_001233174 MODEL 9032618 pseudo LOC102021342 60S ribosomal protein L7 pseudogene NW_004955416 31233424 31238297 + 102021342 AGCD01017729 MODEL 8789204 ncrna LOC102009200 uncharacterized LOC102009200 NW_004955505 3088445 3096275 + 102009200 AGCD01065015;GBDF01203512;XR_264305 MODEL 9023469 pseudo LOC102008823 UDP-glucuronosyltransferase 1-8 pseudogene NW_004955407 23170169 23171410 + 102008823 AGCD01007415 MODEL 8738245 ncrna LOC102028238 uncharacterized LOC102028238 NW_004955442 7101335 7113057 + 102028238 AGCD01037613;AGCD01037614;AGCD01037615;AGCD01037616;GBCQ01106051;XR_262123 MODEL 8883209 pseudo LOC102018010 olfactory receptor 8K3-like NW_004955511 1331160 1331970 + 102018010 AGCD01066365 MODEL 8907916 protein-coding Erc1 ELKS/RAB6-interacting/CAST family member 1 ENCODES a protein that exhibits PDZ domain binding (ortholog); small GTPase binding (ortholog); structural constituent of presynaptic active zone (ortholog); INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); regulation of calcium-dependent activation of synaptic vesicle fusion (ortholog); regulation of DNA-templated transcription (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH Macrocephaly, Dysmorphic Facies, and Psychomotor Retardation (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955454 3584910 4036276 + 102023327 AGCD01045094;AGCD01045095;AGCD01045096;AGCD01045097;AGCD01045098;AGCD01045099;AGCD01045100;AGCD01045101;AGCD01045102;AGCD01045103;AGCD01045104;AGCD01045105;AGCD01045106;AGCD01045107;AGCD01045108;GBBH01147455;XM_005395944;XM_005395945;XM_005395946;XM_005395947;XM_005395948;XM_005395949;XM_013520185;XM_013520186;XM_013520187;XM_013520189;XM_013520190;XM_013520191;XM_013520192 XP_005396001;XP_005396002;XP_005396003;XP_005396004;XP_005396005;XP_005396006;XP_013375639;XP_013375640;XP_013375641;XP_013375643;XP_013375644;XP_013375645;XP_013375646 MODEL 8717709 pseudo LOC102030021 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1-like NW_004955402 35443964 35454925 - 102030021 AGCD01000887 MODEL 8809408 pseudo LOC102018364 lysophosphatidic acid receptor 1-like NW_004955454 3717699 3718824 - 102018364 AGCD01045095 MODEL 8893979 protein-coding LOC102020539 cytohesin-3-like NW_004955463 5346764 5348878 - 102020539 AGCD01049638;XM_013521492 XP_013376946 MODEL 8711974 protein-coding Wwc2 WW and C2 domain containing 2 ENCODES a protein that exhibits kinase binding (ortholog); molecular adaptor activity (ortholog); signaling adaptor activity (ortholog); INVOLVED IN hippo signaling (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of hippo signaling (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955403 25482601 25602412 - 102011268 AGCD01002289;AGCD01002290;AGCD01002291;GBDK01018936;XM_013513141 XP_013368595 MODEL 8762763 protein-coding Slc26a3 solute carrier family 26 member 3 ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); chloride transmembrane transporter activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); INVOLVED IN cellular response to cAMP (ortholog); intracellular pH elevation (ortholog); membrane hyperpolarization (ortholog); PARTICIPATES IN cimetidine pharmacodynamics pathway; esomeprazole pharmacodynamics pathway; famotidine pharmacodynamics pathway; ASSOCIATED WITH congenital secretory chloride diarrhea 1 (ortholog); diarrhea (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); membrane (ortholog) NW_004955410 12102356 12128620 - 102007745 AGCD01010844;GBCQ01075050;XM_005377290 XP_005377347 MODEL 9036492 ncrna LOC102029328 uncharacterized LOC102029328 NW_004955542 2474704 2480168 + 102029328 AGCD01071523;GBBH01168553;XR_001232158 MODEL 8710333 protein-coding Klhl38 kelch like family member 38 NW_004955540 2443230 2452037 - 102004118 AGCD01071321;GBCB01021997;XM_005410931 XP_005410988 MODEL 8855266 protein-coding Pnn pinin, desmosome associated protein INVOLVED IN cell-cell adhesion (ortholog); PARTICIPATES IN spliceosome pathway; FOUND IN catalytic step 2 spliceosome (ortholog); cytoplasm (ortholog); desmosome (ortholog) NW_004955409 22102016 22110505 - 102007867 AGCD01010013;AGCD01010014;AGCD01010015;GBCB01043496;GBDI01071652;XM_013510356 XP_013365810 MODEL 8760439 pseudo LOC102005851 40S ribosomal protein S2-like NW_004955444 6571938 6576569 - 102005851 AGCD01038872;XR_262283 MODEL 8745275 protein-coding P2ry12 purinergic receptor P2Y12 ENCODES a protein that exhibits G protein-coupled adenosine receptor activity (ortholog); G protein-coupled ADP receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); calcium ion transmembrane transport (ortholog); PARTICIPATES IN clopidogrel pharmacodynamics pathway; clopidogrel pharmacokinetics pathway; ticlopidine pharmacodynamics pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acute Lung Injury (ortholog); arteriosclerosis (ortholog); FOUND IN basal plasma membrane (ortholog); caveola (ortholog); cell body membrane (ortholog) NW_004955448 2442368 2488567 - 102028593 AGCD01041282;AGCD01041283;GBDK01095185;XM_005393019;XM_005393020 XP_005393076;XP_005393077 MODEL 8937869 protein-coding LOC102026557 olfactory receptor 1S1-like NW_004955511 2991569 2992534 - 102026557 AGCD01066437;XM_005408023 XP_005408080 MODEL 8803096 protein-coding LOC102019554 solute carrier family 22 member 9 NW_004955599 192839 200622 + 102019554 AGCD01076629;AGCD01076630;GBDF01226037;XM_013510037 XP_013365491 MODEL 8944017 ncrna LOC102011945 uncharacterized LOC102011945 NW_004955405 15509552 15549105 + 102011945 AGCD01004947;AGCD01004948;GBDF01052663;XR_259378;XR_259379 MODEL 8865972 protein-coding Tmie transmembrane inner ear INVOLVED IN inner ear morphogenesis (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 6 (ortholog); genetic disease (ortholog) NW_004955420 25428542 25435701 - 102021131 AGCD01021358;GBDJ01061219;XM_005383427 XP_005383484 MODEL 8969023 pseudo LOC102024080 protein SGT1 homolog NW_004955403 2839891 2841159 + 102024080 AGCD01001739 MODEL 8847881 protein-coding Ier2 immediate early response 2 INVOLVED IN cell motility (ortholog); neuron differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH childhood acute myeloid leukemia (ortholog); colorectal adenocarcinoma (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955415 32159762 32161530 + 102030303 AGCD01016712;GBDK01079819;XM_005381057 XP_005381114 MODEL 8750803 protein-coding Saxo2 stabilizer of axonemal microtubules 2 FOUND IN nucleus (ortholog) NW_004955416 12789683 12811159 + 102027637 AGCD01017212;AGCD01017213;GBDF01086244;XM_005381455;XM_005381456;XM_005381457;XM_005381458 XP_005381512;XP_005381513;XP_005381514;XP_005381515 MODEL 8732046 protein-coding LOC102004445 collagen alpha-1(II) chain NW_004955404 512703 521797 + 102004445 AGCD01003202;GBCE01072410;XM_005373945 XP_005374002 MODEL 8794359 protein-coding Pgam2 phosphoglycerate mutase 2 ENCODES a protein that exhibits identical protein binding (ortholog); phosphoglycerate mutase activity (ortholog); INVOLVED IN canonical glycolysis (ortholog); gluconeogenesis (ortholog); glycolytic process (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH glycogen storage disease X (ortholog); myoglobinuria (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955456 7909891 7912116 + 102023875 AGCD01046435;GBDK01132729;XM_005396680 XP_005396737 MODEL 10327993 ncrna LOC106146953 uncharacterized LOC106146953 NW_004955506 4640462 4654712 + 106146953 AGCD01065342;GBCB01113559;XR_001231616 MODEL 8764131 protein-coding Bfsp2 beaded filament structural protein 2 ENCODES a protein that exhibits structural constituent of eye lens (ortholog); INVOLVED IN cell maturation (ortholog); cytoskeleton organization (ortholog); intermediate filament cytoskeleton organization (ortholog); ASSOCIATED WITH cataract (ortholog); cataract 12 multiple types (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); intermediate filament (ortholog); plasma membrane (ortholog) NW_004955501 5083456 5145256 - 102030332 AGCD01064150;AGCD01064151;AGCD01064152;GBCE01061604;XM_005406819 XP_005406876 MODEL 8831578 protein-coding Pigv phosphatidylinositol glycan anchor biosynthesis class V ENCODES a protein that exhibits alpha-1,6-mannosyltransferase activity (ortholog); dol-P-Man:Man(1)GlcN-acyl-PI alpha-1,6-mannosyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); hyperphosphatasia with impaired intellectual development syndrome (ortholog); hyperphosphatasia with impaired intellectual development syndrome 1 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955452 6128262 6139204 + 102021833 AGCD01044089;GBDK01013138;XM_005394872;XM_005394873;XM_005394874;XM_005394875;XM_005394876;XM_013519561;XM_013519562;XM_013519563;XM_013519564 XP_005394929;XP_005394930;XP_005394931;XP_005394932;XP_005394933;XP_013375015;XP_013375016;XP_013375017;XP_013375018 MODEL 8886178 protein-coding ND4 NADH dehydrogenase subunit 4 MT 10171 11548 + 15822211 JX312692 AFQ55786;YP_008080754 REVIEWED 8799529 ncrna LOC102026905 uncharacterized LOC102026905 NW_004955435 1628820 1637076 - 102026905 AGCD01032749;GBDF01303299;XR_261655;XR_261656 MODEL 8957836 ncrna LOC102006201 uncharacterized LOC102006201 NW_004955452 2332910 2343134 + 102006201 AGCD01043890;GBDF01181028;XR_262638;XR_262639 MODEL 9057826 protein-coding Erc2 ELKS/RAB6-interacting/CAST family member 2 ENCODES a protein that exhibits PDZ domain binding (ortholog); protein-containing complex binding (ortholog); structural constituent of presynaptic active zone (ortholog); INVOLVED IN regulation of calcium-dependent activation of synaptic vesicle fusion (ortholog); regulation of presynaptic cytosolic calcium ion concentration (ortholog); synapse organization (ortholog); FOUND IN GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog); Golgi-associated vesicle (ortholog) NW_004955430 5345191 6308909 - 102008018 AGCD01029260;AGCD01029261;AGCD01029262;AGCD01029263;AGCD01029264;AGCD01029265;AGCD01029266;AGCD01029267;AGCD01029268;AGCD01029269;AGCD01029270;AGCD01029271;AGCD01029272;AGCD01029273;AGCD01029274;AGCD01029275;AGCD01029276;AGCD01029277;AGCD01029278;AGCD01029279;AGCD01029280;AGCD01029281;AGCD01029282;AGCD01029283;AGCD01029284;AGCD01029285;GBDI01215309;XM_005387385;XM_005387388;XM_013515684;XM_013515685;XM_013515686;XM_013515687;XM_013515688;XM_013515689;XM_013515690;XR_001234567 XP_005387442;XP_005387445;XP_013371138;XP_013371139;XP_013371140;XP_013371141;XP_013371142;XP_013371143;XP_013371144 MODEL 8922405 ncrna LOC102027594 uncharacterized LOC102027594 NW_004955402 48029213 48031577 + 102027594 AGCD01001196;XR_259098 MODEL 8713381 ncrna LOC102012343 uncharacterized LOC102012343 NW_004955427 8525675 8532142 - 102012343 AGCD01027075;GBDF01226078;XR_261241 MODEL 10108165 ncrna LOC106146673 uncharacterized LOC106146673 NW_004955491 5706644 5707295 - 106146673 AGCD01060499;XR_001231215 MODEL 10211853 protein-coding LOC106150063 uncharacterized LOC106150063 NW_004955463 13159649 13333530 - 106150063 AGCD01049862;AGCD01049863;AGCD01049864;GBDI01086240;XM_013521499;XR_001236635;XR_001236636 XP_013376953 MODEL 8741623 protein-coding LOC102015321 zinc finger protein 14-like NW_004955487 57670 76813 - 102015321 AGCD01059204;AGCD01059205;AGCD01059206;GBDF01011198;XM_013504398;XM_013504399;XM_013504400;XM_013504401;XM_013504402;XM_013504403 XP_013359852;XP_013359853;XP_013359854;XP_013359855;XP_013359856;XP_013359857 MODEL 8756810 protein-coding Spryd4 SPRY domain containing 4 FOUND IN mitochondrion (ortholog); nucleus (ortholog) NW_004955458 4051978 4053734 + 102010033 AGCD01047364;GBDI01357431;XM_005397315 XP_005397372 MODEL 8868564 ncrna LOC102003068 uncharacterized LOC102003068 NW_004955439 1703273 1722660 - 102003068 AGCD01035626;GBDF01124953;XR_001235210;XR_261961 MODEL 8943506 protein-coding LOC102025141 taste receptor type 2 member 1-like NW_004955504 6888806 6889702 - 102025141 AGCD01064930;XM_005407092 XP_005407149 MODEL 8858849 pseudo LOC102021348 prefoldin subunit 1 pseudogene NW_004955482 4817894 4819362 - 102021348 AGCD01057311 MODEL 39132939 snorna SNORD11B small nucleolar RNA, C/D box 11B 9023802 pseudo LOC102026558 tumor susceptibility gene 101 protein pseudogene NW_004955429 20879763 20890319 - 102026558 AGCD01028992 MODEL 8857106 protein-coding LOC102019555 uncharacterized LOC102019555 NW_004955604 471855 512915 + 102019555 AGCD01076908;AGCD01076909;AGCD01076910;AGCD01076911;AGCD01076912;AGCD01076913;AGCD01076914;AGCD01076915;AGCD01076916;AGCD01076917;AGCD01076918;AGCD01076919;XM_005414874 XP_005414931 MODEL 8740844 protein-coding Shbg sex hormone binding globulin INVOLVED IN primary spermatocyte growth (ortholog); ASSOCIATED WITH alcohol use disorder (ortholog); diabetes mellitus (ortholog); dilated cardiomyopathy (ortholog) NW_004955467 9301173 9305010 - 102006891 AGCD01051493;AGCD01051494;GBCQ01035544;XM_005399468;XM_005399469;XM_005399470;XM_013522146 XP_005399525;XP_005399526;XP_005399527;XP_013377600 MODEL 9054016 pseudo LOC102030023 high mobility group protein B2 pseudogene NW_004955606 459972 464922 + 102030023 AGCD01076964 MODEL 8998286 protein-coding Lamtor3 late endosomal/lysosomal adaptor, MAPK and MTOR activator 3 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); kinase activator activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to nutrient levels (ortholog); intracellular protein localization (ortholog); PARTICIPATES IN mTOR signaling pathway; FOUND IN FNIP-folliculin RagC/D GAP (ortholog); late endosome (ortholog); lysosomal membrane (ortholog) NW_004955496 7789210 7809143 + 102022618 AGCD01062385;GBDF01086384;XM_005406266;XM_013505384;XM_013505385 XP_005406323;XP_013360838;XP_013360839 MODEL 10110811 protein-coding LOC106146531 translation initiation factor IF-2 NW_004955483 9160890 9376873 - 106146531 AGCD01057858;AGCD01057859;AGCD01057860;GBDJ01390330;XM_013503765 XP_013359219 MODEL 9043707 ncrna LOC102007293 uncharacterized LOC102007293 NW_004955404 27234470 27303032 - 102007293 AGCD01003918;AGCD01003919;AGCD01003920;AGCD01003921;AGCD01003922;GBDF01074909;XR_259322 MODEL 8753350 pseudo LOC102003398 ubiquitin domain-containing protein 2 pseudogene NW_004955633 68363 69344 + 102003398 AGCD01077591 MODEL 8953878 protein-coding Pgam5 PGAM family member 5, mitochondrial serine/threonine protein phosphatase ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN necroptotic process (ortholog); negative regulation of cold-induced thermogenesis (ortholog); PARTICIPATES IN mitochondrial autophagy pathway; nuclear factor, erythroid 2 like 2 signaling pathway; FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955482 356863 363666 - 102017876 AGCD01057171;GBDJ01356955;XM_005402943;XM_005402944;XM_013503641 XP_005403000;XP_005403001;XP_013359095 MODEL 8804010 protein-coding ND4L NADH dehydrogenase subunit 4L MT 9881 10177 + 15822230 JX312692 AFQ55785;YP_008080753 REVIEWED 8986778 protein-coding Tenm2 teneurin transmembrane protein 2 ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); identical protein binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN retrograde trans-synaptic signaling by trans-synaptic protein complex (ortholog); ASSOCIATED WITH esophageal atresia (ortholog); substance-related disorder (ortholog); FOUND IN cell-cell junction (ortholog); dendritic spine (ortholog); extrinsic component of postsynaptic membrane (ortholog) NW_004955408 20150223 21340276 + 102008502 AGCD01008538;AGCD01008539;AGCD01008540;AGCD01008541;AGCD01008542;AGCD01008543;AGCD01008544;AGCD01008545;AGCD01008546;AGCD01008547;AGCD01008548;AGCD01008549;AGCD01008550;AGCD01008551;AGCD01008552;AGCD01008553;GBDF01172483;XM_005376287;XM_005376288;XM_005376289;XM_005376291;XM_005376292;XM_005376294;XM_005376295;XM_005376297;XM_013509101;XM_013509109;XM_013509114 XP_005376344;XP_005376345;XP_005376346;XP_005376348;XP_005376349;XP_005376351;XP_005376352;XP_005376354;XP_013364555;XP_013364563;XP_013364568 MODEL 10338032 ncrna LOC106148048 uncharacterized LOC106148048 NW_004955415 259673 260998 + 106148048 AGCD01015838;GBBH01224130;XR_001233179 MODEL 8713180 pseudo LOC102005852 60S ribosomal protein L21 pseudogene NW_004955565 1247877 1249322 - 102005852 AGCD01074307 MODEL 9061789 protein-coding Klhl4 kelch like family member 4 FOUND IN cilium (ortholog); intercellular bridge (ortholog); microtubule cytoskeleton (ortholog) NW_004955525 1849428 1963168 + 102019316 AGCD01069065;AGCD01069066;AGCD01069067;AGCD01069068;AGCD01069069;GBBH01100983;XM_005409727;XM_005409728 XP_005409784;XP_005409785 MODEL 10325901 ncrna LOC106146400 uncharacterized LOC106146400 NW_004955477 6038241 6041311 + 106146400 AGCD01055601;GBDF01177805;XR_001230821 MODEL 8981331 protein-coding LOC102027597 vomeronasal type-2 receptor 116-like NW_004955450 481799 497585 + 102027597 AGCD01042338;XM_013518827 XP_013374281 MODEL 9011474 ncrna LOC102025492 uncharacterized LOC102025492 NW_004955431 16326970 16332478 + 102025492 AGCD01030377;GBDF01041195;XR_261482 MODEL 9027735 pseudo LOC102008826 creatine kinase U-type, mitochondrial-like NW_004955409 22945071 22950655 + 102008826 AGCD01010048 MODEL 8892998 ncrna LOC102009202 uncharacterized LOC102009202 NW_004955508 2070981 2129438 - 102009202 AGCD01065779;AGCD01065780;AGCD01065781;AGCD01065782;GBDF01234233;XR_001231648;XR_001231649;XR_001231650;XR_001231651;XR_001231652;XR_264387 MODEL 10306008 protein-coding LOC106146267 neuroendocrine secretory protein 55-like NW_004955445 689920 749511 - 106146267 AGCD01039322;AGCD01039323;XM_013518250 XP_013373704 MODEL 8855044 trna trnG(tcc) tRNA-Gly MT 9396 9464 + 15822209 9055404 protein-coding Spag7 sperm associated antigen 7 FOUND IN nucleoplasm (ortholog) NW_004955467 10369493 10374540 - 102024205 AGCD01051561;GBDF01047089;XM_005399632 XP_005399689 MODEL 8957601 pseudo LOC102024082 ATP-dependent RNA helicase DDX18 pseudogene NW_004955405 18903983 18905723 - 102024082 AGCD01005029 MODEL 8712471 protein-coding LOC102028239 ribonuclease pancreatic-like NW_004955550 1701601 1702672 + 102028239 AGCD01072584;XM_013508544 XP_013363998 MODEL 8731093 ncrna LOC102018365 uncharacterized LOC102018365 NW_004955455 1202031 1214877 + 102018365 AGCD01045571;GBDK01265078;XR_262808 MODEL 39133540 snrna U4 U4 spliceosomal RNA 9031385 ncrna LOC102020544 uncharacterized LOC102020544 NW_004955412 6553663 6556789 - 102020544 AGCD01012677;GBDF01148663;XR_259981 MODEL 8766172 ncrna LOC102004449 uncharacterized LOC102004449 NW_004955405 42046220 42053786 + 102004449 AGCD01005576;GBBH01198079;XR_001235965;XR_259459 MODEL 9008756 ncrna LOC102009976 uncharacterized LOC102009976 NW_004955515 4423696 4427822 - 102009976 AGCD01067320;GBDF01279453;XR_001231800;XR_001231801;XR_001231802;XR_001231803 MODEL 9049502 ncrna LOC102029330 uncharacterized LOC102029330 NW_004955441 11258488 11273007 + 102029330 AGCD01037105;AGCD01037106;GBDF01111283;XR_262070 MODEL 8874445 protein-coding Wwc3 WWC family member 3 ENCODES a protein that exhibits kinase binding (ortholog); molecular adaptor activity (ortholog); signaling adaptor activity (ortholog); INVOLVED IN hippo signaling (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of hippo signaling (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955544 3012602 3126518 - 102008666 AGCD01071747;AGCD01071748;GBCE01023937;GBCQ01101676;XM_005411401 XP_005411458 MODEL 8985813 protein-coding LOC102023786 cytochrome c, somatic ENCODES a protein that exhibits enzyme binding (ortholog); heme binding (ortholog); INVOLVED IN response to auditory stimulus; apoptotic process (ortholog); glial cell apoptotic process (ortholog); PARTICIPATES IN cardiolipin metabolic pathway; ceramide signaling pathway; electron transport chain pathway; ASSOCIATED WITH brain ischemia (ortholog); Chloracne (ortholog); cholangiocarcinoma (ortholog); FOUND IN apoptosome (ortholog); cytosol (ortholog); mitochondrial intermembrane space (ortholog) NW_004955410 27086405 27089255 - 102023786 AGCD01011208;GBDF01004683;XM_005377428;XM_005377429 XP_005377485;XP_005377486 MODEL 8702252 ncrna LOC102006202 uncharacterized LOC102006202 NW_004955452 4902765 4908470 + 102006202 AGCD01044001;GBCC01009101;XR_262655 MODEL 9026347 protein-coding P2ry13 purinergic receptor P2Y13 ENCODES a protein that exhibits G protein-coupled purinergic nucleotide receptor activity (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955448 2434242 2437371 - 102029134 AGCD01041282;GBDK01025262;XM_005393021 XP_005393078 MODEL 8881076 protein-coding LOC102003401 protein MTO1 homolog, mitochondrial-like NW_004955981 5824 8486 + 102003401 AGCD01078801;AGCD01078802;XM_013510212 XP_013365666 MODEL 8960611 ncrna LOC102011946 uncharacterized LOC102011946 NW_004955452 12789670 12791076 - 102011946 AGCD01044366;GBDF01032085;XR_262681 MODEL 8882409 protein-coding Spryd7 SPRY domain containing 7 NW_004955431 3303091 3330360 - 102028321 AGCD01029962;GBCB01002524;XM_005387601;XM_013515781 XP_005387658;XP_013371235 MODEL 9057733 protein-coding LOC102005856 cytochrome P450 3A9-like NW_004955573 976002 1018678 - 102005856 AGCD01075011;AGCD01075012;AGCD01075013;GBCQ01036396;XM_005413764;XM_013509445 XP_005413821;XP_013364899 MODEL 39131792 snorna SNORD12 small nucleolar RNA, C/D box 12 8887112 protein-coding Saxo4 stabilizer of axonemal microtubules 4 ENCODES a protein that exhibits phosphatase binding (ortholog); INVOLVED IN flagellated sperm motility (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955511 6105063 6116809 - 102012460 AGCD01066597;GBDK01219508;XM_005408146;XM_013506470 XP_005408203;XP_013361924 MODEL 8779551 protein-coding Pno1 partner of NOB1 homolog INVOLVED IN ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; FOUND IN nucleolus (ortholog); small-subunit processome (ortholog) NW_004955424 16697109 16705963 - 102023494 AGCD01024748;GBDI01227497;XM_005385673 XP_005385730 MODEL 8844704 protein-coding Slc26a4 solute carrier family 26 member 4 ENCODES a protein that exhibits chloride transmembrane transporter activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); iodide transmembrane transporter activity (ortholog); INVOLVED IN inorganic anion transport (ortholog); iodide transport (ortholog); regulation of pH (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH Acidoses (ortholog); autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 2 (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); extracellular exosome (ortholog) NW_004955410 12008067 12057147 + 102006433 AGCD01010841;AGCD01010842;AGCD01010843;GBCE01014855;XM_005377285;XM_005377286 XP_005377342;XP_005377343 MODEL 10356912 ncrna LOC106146532 uncharacterized LOC106146532 NW_004955407 14843736 14853525 + 106146532 AGCD01007175;GBCE01011337;XR_001231009 MODEL 8708001 ncrna LOC102018366 uncharacterized LOC102018366 NW_004955409 33777180 33840794 - 102018366 AGCD01010400;GBDF01249318;XR_259801 MODEL 8840837 ncrna LOC102015324 uncharacterized LOC102015324 NW_004955494 1826458 1865444 + 102015324 AGCD01061424;GBCB01037072;XR_264104 MODEL 10116232 ncrna LOC106150064 uncharacterized LOC106150064 NW_004955463 5507350 5558745 - 106150064 AGCD01049639;AGCD01049640;GBBH01168928;XR_001236639;XR_001236640;XR_001236641 MODEL 9014010 protein-coding Ercc1 ERCC excision repair 1, endonuclease non-catalytic subunit ENCODES a protein that exhibits 3' overhang single-stranded DNA endonuclease activity (ortholog); damaged DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN cell development (ortholog); cell population proliferation (ortholog); chromosome organization (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); alcohol use disorder (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); ERCC4-ERCC1 complex (ortholog) NW_004955555 2393510 2430180 - 102012252 AGCD01073149;AGCD01073150;AGCD01073151;AGCD01073152;AGCD01073153;GBCB01023844;XM_005412522;XM_005412523;XM_005412524;XM_013508709;XM_013508710 XP_005412579;XP_005412580;XP_005412581;XP_013364163;XP_013364164 MODEL 10355205 protein-coding LOC106149243 uncharacterized LOC106149243 NW_004955441 13676224 13697566 + 106149243 AGCD01037157;AGCD01037158;GBCB01069548;XM_013517517 XP_013372971 MODEL 8832499 protein-coding Ier3 immediate early response 3 INVOLVED IN DNA damage response (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); mitotic G2 DNA damage checkpoint signaling (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); COVID-19 (ortholog); hypertension (ortholog); FOUND IN nucleus (ortholog) NW_004955583 730353 731301 - 102019341 AGCD01075858;GBDF01049433;XM_005414319 XP_005414376 MODEL 8971025 ncrna LOC102019556 uncharacterized LOC102019556 NW_004955403 15853903 15937454 - 102019556 AGCD01002055;AGCD01002056;GBDF01108949;XR_259174 MODEL 8912676 protein-coding Spag8 sperm associated antigen 8 INVOLVED IN flagellated sperm motility (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Leber congenital amaurosis (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); cilium (ortholog) NW_004955472 503286 506261 + 102006765 AGCD01053339;GBDK01184789;XM_013522937 XP_013378391 MODEL 10135385 pseudo LOC106146954 CAP-Gly domain-containing linker protein 1 pseudogene NW_004955507 443760 445206 + 106146954 AGCD01065474 MODEL 8719927 protein-coding Tenm3 teneurin transmembrane protein 3 ENCODES a protein that exhibits identical protein binding (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN camera-type eye morphogenesis (ortholog); homophilic cell-cell adhesion (ortholog); positive regulation of neuron projection development (ortholog); ASSOCIATED WITH cocaine dependence (ortholog); Cocaine-Related Disorders (ortholog); genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955403 25920919 26534817 - 102013237 AGCD01002295;AGCD01002296;AGCD01002297;AGCD01002298;AGCD01002299;AGCD01002300;AGCD01002301;AGCD01002302;AGCD01002303;AGCD01002304;AGCD01002305;AGCD01002306;AGCD01002307;AGCD01002308;GBCB01121667;XM_013513152;XM_013513154 XP_013368606;XP_013368608 MODEL 8869239 pseudo LOC102030024 T-complex protein 1 subunit gamma pseudogene NW_004955614 175731 185137 - 102030024 AGCD01077234 MODEL 8900418 pseudo LOC102024086 aldose reductase-related protein 2 pseudogene NW_004955454 8367664 8368575 + 102024086 AGCD01045324 MODEL 9061097 protein-coding LOC102026909 melanoma-associated antigen D4-like NW_004955543 3194559 3196865 - 102026909 AGCD01071677;GBDI01280213;XM_005411371 XP_005411428 MODEL 8911810 protein-coding Pigw phosphatidylinositol glycan anchor biosynthesis class W ENCODES a protein that exhibits glucosaminyl-phosphatidylinositol O-acyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH hyperphosphatasia with impaired intellectual development syndrome (ortholog); hyperphosphatasia with impaired intellectual development syndrome 5 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955451 1388474 1391671 - 102004224 AGCD01042967;GBBH01077894;XM_005393950;XM_005393951;XM_013519338 XP_005394007;XP_005394008;XP_013374792 MODEL 8737456 protein-coding Lamtor4 late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to nutrient levels (ortholog); positive regulation of TOR signaling (ortholog); PARTICIPATES IN mTOR signaling pathway; FOUND IN FNIP-folliculin RagC/D GAP (ortholog); lysosomal membrane (ortholog); lysosome (ortholog) NW_004955573 649604 653185 - 102027244 AGCD01074996;GBCB01103131;XM_005413740;XM_013509468 XP_005413797;XP_013364922 MODEL 8991919 protein-coding Spsb1 splA/ryanodine receptor domain and SOCS box containing 1 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytosol (ortholog) NW_004955486 4022307 4061111 - 102022195 AGCD01059051;GBCE01040744;XM_005404039;XM_005404040;XM_005404041;XM_005404042 XP_005404096;XP_005404097;XP_005404098;XP_005404099 MODEL 39133541 snrna U4 U4 spliceosomal RNA 8929512 protein-coding Shc1 SHC adaptor protein 1 ENCODES a protein that exhibits ephrin receptor binding (ortholog); epidermal growth factor binding (ortholog); epidermal growth factor receptor binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); angiogenesis (ortholog); animal organ regeneration (ortholog); PARTICIPATES IN brain-derived neurotrophic factor signaling pathway; epidermal growth factor/neuregulin signaling pathway; erythropoietin signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); FOUND IN cytosol (ortholog); endosome membrane (ortholog); plasma membrane (ortholog) NW_004955545 1468391 1479209 - 102015985 AGCD01071856;GBDF01158976;XM_005411532;XM_005411534 XP_005411589;XP_005411591 MODEL 8920297 pseudo LOC102007294 serine/threonine/tyrosine-interacting protein pseudogene NW_004955453 2624180 2624993 + 102007294 AGCD01044634 MODEL 9007603 protein-coding LOC102003071 vomeronasal type-1 receptor 4-like NW_004955558 653203 654063 + 102003071 AGCD01073381;XM_005412739 XP_005412796 MODEL 8706948 protein-coding Pgap1 post-GPI attachment to proteins inositol deacylase 1 ENCODES a protein that exhibits deacylase activity (ortholog); INVOLVED IN anterior/posterior axis specification (ortholog); embryonic pattern specification (ortholog); forebrain regionalization (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 58 (ortholog); Cerebral Visual Impairment and Intellectual Disability (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955403 3527398 3582004 + 102025426 AGCD01001769;AGCD01001770;GBCE01082448;GBDI01167905;XM_013512108 XP_013367562 MODEL 9029672 protein-coding LOC102026914 epididymal secretory protein E3-beta NW_004955550 1554555 1555061 + 102026914 AGCD01072580;XM_005412144 XP_005412201 MODEL 8763413 protein-coding ND5 NADH dehydrogenase subunit 5 MT 11751 13574 + 15822233 JX312692 AFQ55787;YP_008080755 REVIEWED 8757293 ncrna LOC102006203 uncharacterized LOC102006203 NW_004955404 45391064 45417702 - 102006203 AGCD01004443;GBDF01040437;XR_259340 MODEL 8751975 ncrna LOC102025146 uncharacterized LOC102025146 NW_004955429 15336841 15349273 - 102025146 AGCD01028803;AGCD01028804;GBDF01017223;XR_261338 MODEL 8953115 ncrna LOC102023788 uncharacterized LOC102023788 NW_004955464 12103577 12165652 - 102023788 AGCD01050180;AGCD01050181;AGCD01050182;AGCD01050183;GBDF01194451;XR_001236682;XR_001236683;XR_263216 MODEL 10328889 ncrna LOC106146401 uncharacterized LOC106146401 NW_004955477 2811768 2831562 - 106146401 AGCD01055533;GBDF01306981;XR_001230823 MODEL 8748584 protein-coding LOC102026559 membrane-spanning 4-domains subfamily A member 6B-like NW_004955511 5381340 5406266 + 102026559 AGCD01066561;AGCD01066562;GBDF01008099;XM_005408102;XM_005408108;XM_013506394;XM_013506395;XM_013506396;XM_013506397;XM_013506398;XM_013506399 XP_005408159;XP_005408165;XP_013361848;XP_013361849;XP_013361850;XP_013361851;XP_013361852;XP_013361853 MODEL 8834951 protein-coding LOC102021350 histone H3 NW_004955483 969514 970652 - 102021350 AGCD01057638;GBDF01240962;XM_013503791 XP_013359245 MODEL 8989929 ncrna LOC102008827 uncharacterized LOC102008827 NW_004955410 29223762 29228888 - 102008827 AGCD01011276;GBDK01225118;XR_259882 MODEL 8832907 ncrna LOC102009203 uncharacterized LOC102009203 NW_004955429 19713878 19748003 - 102009203 AGCD01028967;AGCD01028968;GBDK01115535;XR_001234525;XR_261366;XR_261367 MODEL 10326759 protein-coding LOC106146268 olfactory receptor 1J4-like NW_004955419 5620633 5621571 - 106146268 AGCD01019830;XM_013513120 XP_013368574 MODEL 8809165 pseudo LOC102011948 NF-kappa-B inhibitor-interacting Ras-like protein 1 NW_004955453 11424663 11425286 - 102011948 AGCD01044807 MODEL 8995647 protein-coding Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ENCODES a protein that exhibits 5'-3' DNA helicase activity (ortholog); ATP hydrolysis activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN apoptotic process (ortholog); bone mineralization (ortholog); cell population proliferation (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH acoustic neuroma (ortholog); acquired immunodeficiency syndrome (ortholog); acute leukemia (ortholog); FOUND IN CAK-ERCC2 complex (ortholog); cytoplasm (ortholog); MMXD complex (ortholog) NW_004955555 2355005 2369599 - 102009659 AGCD01073148;GBDF01126874;XM_005412511;XM_005412512;XM_013508701 XP_005412568;XP_005412569;XP_013364155 MODEL 8983600 trna trnH(gtg) tRNA-His MT 11549 11617 + 15822212 8911732 pseudo LOC102028240 ADP-ribosylation factor-like protein 5A pseudogene NW_004955552 2442653 2443160 - 102028240 AGCD01072815 MODEL 10154017 ncrna LOC106146674 uncharacterized LOC106146674 NW_004955491 5367208 5367867 + 106146674 AGCD01060479;GBDF01178979;XR_001231216 MODEL 9065668 pseudo LOC102012344 protein AMN1 homolog pseudogene NW_004955505 4070700 4071337 + 102012344 AGCD01065083;XR_264308 MODEL 8839198 ncrna LOC102020545 uncharacterized LOC102020545 NW_004955412 13502529 13517124 + 102020545 AGCD01012840;GBDF01189310;XR_001232922;XR_001232923;XR_001232924 MODEL 8877138 pseudo LOC102009977 inosine-5'-monophosphate dehydrogenase 2 pseudogene NW_004955516 3145206 3147423 - 102009977 AGCD01067484 MODEL 8897308 pseudo LOC102018013 protein AF-9 pseudogene NW_004955432 1643335 1645310 + 102018013 AGCD01030603 MODEL 8853277 protein-coding Tmigd1 transmembrane and immunoglobulin domain containing 1 ENCODES a protein that exhibits cell adhesion mediator activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN brush border assembly (ortholog); cell aggregation (ortholog); cell migration (ortholog); FOUND IN adherens junction (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955481 2977245 3009724 + 102004600 AGCD01056891;GBDK01145333;XM_005402660;XM_013503461 XP_005402717;XP_013358915 MODEL 10314271 ncrna LOC106148049 uncharacterized LOC106148049 NW_004955415 264340 299525 + 106148049 AGCD01015838;AGCD01015839;GBDF01234236;XR_001233180;XR_001233181;XR_001233182 MODEL 8838403 protein-coding LOC102018376 apolipoprotein L2-like NW_004955413 22780940 22803083 - 102018376 AGCD01014317;GBDJ01239605;XM_013511518 XP_013366972 MODEL 9007012 pseudo LOC102009982 ADP-ribosylation factor-like protein 5A NW_004955435 20926678 20927274 - 102009982 AGCD01033467 MODEL 9041500 protein-coding LOC102027600 cohesin subunit SA-1-like NW_004955921 904 4554 - 102027600 AGCD01078672;GBCC01039482;XM_005415149 XP_005415206 MODEL 8798913 protein-coding LOC102025498 putative protein ZNF720 NW_004955432 4724722 4728728 + 102025498 AGCD01030741;GBCQ01068824;GBDF01086492;XM_013515916 XP_013371370 MODEL 9037717 protein-coding LOC102015326 zinc finger protein 317 NW_004955495 265957 274463 + 102015326 AGCD01061616;AGCD01061617;GBDF01253179;XM_005405549 XP_005405606 MODEL 10277218 pseudo LOC102029337 Ig heavy chain V-III region 23-like NW_004955569 567506 567982 + 102029337 AGCD01074595 MODEL 8869097 protein-coding Bglap bone gamma-carboxyglutamate protein ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); hormone activity (ortholog); INVOLVED IN bone development (ortholog); brain development (ortholog); cellular response to BMP stimulus (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH asthma (ortholog); autosomal dominant hypocalcemia (ortholog); Bone Fractures (ortholog); FOUND IN cell projection (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955545 2381091 2382114 + 102022427 AGCD01071898;GBDJ01042544;XM_005411659 XP_005411716 MODEL 39133365 snorna SNORD121A small nucleolar RNA, C/D box 121A 8945055 ncrna LOC102004451 uncharacterized LOC102004451 NW_004955406 7310932 7332321 + 102004451 AGCD01005768;AGCD01005769;XR_001236295;XR_259483;XR_259484 MODEL 8916884 protein-coding LOC102019558 myomesin-3-like NW_004956379 652 3958 + 102019558 AGCD01079511;GBCQ01120105;GBDK01103330;XM_005415199 XP_005415256 MODEL 8800498 protein-coding LOC102008828 uncharacterized LOC102008828 NW_004955463 7162477 7169673 + 102008828 AGCD01049720;AGCD01049721;GBDF01056767;XM_013521489 XP_013376943 MODEL 8724820 protein-coding Saxo5 stabilizer of axonemal microtubules 5 NW_004955563 1723768 1729831 - 102016531 AGCD01074159;AGCD01074160;GBDF01087755;GBDF01087757;XM_013509149 XP_013364603 MODEL 8869605 protein-coding Pnoc prepronociceptin ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN behavioral response to ethanol (ortholog); cellular response to ethanol (ortholog); chemical synaptic transmission (ortholog); ASSOCIATED WITH Acute Alcohol Sensitivity (ortholog); alcohol dependence (ortholog); alcohol use disorder (ortholog); FOUND IN synaptic membrane (ortholog) NW_004955403 50735567 50755892 + 102012392 AGCD01002969;GBDF01284017;XM_005373768;XM_005373769;XM_005373770 XP_005373825;XP_005373826;XP_005373827 MODEL 9042815 protein-coding Spag9 sperm associated antigen 9 ENCODES a protein that exhibits identical protein binding (ortholog); JUN kinase binding (ortholog); kinesin binding (ortholog); INVOLVED IN JNK cascade (ortholog); lysosome localization (ortholog); negative regulation of dendrite extension (ortholog); PARTICIPATES IN p38 MAPK signaling pathway; ASSOCIATED WITH endometrial cancer (ortholog); hepatocellular carcinoma (ortholog); liver cirrhosis (ortholog); FOUND IN centriolar satellite (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955451 10800251 10895400 + 102027370 AGCD01043333;AGCD01043334;GBCB01024996;XM_005394115;XM_005394116;XM_005394118;XM_005394119;XM_013519279;XM_013519280;XM_013519281;XM_013519283 XP_005394172;XP_005394173;XP_005394175;XP_005394176;XP_013374733;XP_013374734;XP_013374735;XP_013374737 MODEL 8842198 protein-coding Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); ATP hydrolysis activity (ortholog); promoter-specific chromatin binding (ortholog); INVOLVED IN apoptotic process (ortholog); DNA repair (ortholog); DNA topological change (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Arsenic Poisoning (ortholog); asphyxia neonatorum (ortholog); FOUND IN nucleoplasm (ortholog); transcription factor TFIID complex (ortholog); transcription factor TFIIH core complex (ortholog) NW_004955459 3210936 3238401 + 102005903 AGCD01048010;AGCD01048011;GBDJ01135141;XM_005397616;XM_005397617;XM_013521085 XP_005397673;XP_005397674;XP_013376539 MODEL 8818665 pseudo LOC102012345 coiled-coil domain-containing protein 169-like NW_004955427 322526 326614 + 102012345 AGCD01026827 MODEL 8763051 protein-coding Slc26a5 solute carrier family 26 member 5 ENCODES a protein that exhibits chloride:bicarbonate antiporter activity (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); chloride transmembrane transport (ortholog); chloride transport (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 61 (ortholog); Deafness (ortholog); FOUND IN basolateral plasma membrane (ortholog); lateral plasma membrane (ortholog); lateral wall of outer hair cell (ortholog) NW_004955410 8358780 8414145 - 102017313 AGCD01010744;GBDF01207464;XM_005377231 XP_005377288 MODEL 10063803 ncrna LOC106150065 uncharacterized LOC106150065 NW_004955463 7878341 8009516 - 106150065 AGCD01049748;AGCD01049749;AGCD01049750;AGCD01049751;AGCD01049752;GBDF01124015;XR_001236647 MODEL 8834269 protein-coding LOC102003403 formin-like protein 1 NW_004955451 16903163 16906378 - 102003403 AGCD01043711;GBDF01002809;XM_005394500;XM_005394501;XM_013519234 XP_005394557;XP_005394558;XP_013374688 MODEL 8837903 protein-coding P2ry14 purinergic receptor P2Y14 INVOLVED IN hematopoietic stem cell homeostasis (ortholog); immune response (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955448 2350846 2367633 - 102030017 AGCD01041281;AGCD01041282;GBBH01203423;XM_013518618 XP_013374072 MODEL 8951948 pseudo LOC102026915 keratin, type I cytoskeletal 18 pseudogene NW_004955552 1521365 1522259 - 102026915 AGCD01072775 MODEL 8851512 protein-coding Ier3ip1 immediate early response 3 interacting protein 1 INVOLVED IN brain development (ortholog); cell maturation (ortholog); chromatin organization (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic vesicle (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955402 32532692 32550638 - 102007070 AGCD01000824;AGCD01000825;GBDK01229939;XM_005372888 XP_005372945 MODEL 8787706 protein-coding Pgap2 post-GPI attachment to proteins 2 INVOLVED IN GPI anchor biosynthetic process (ortholog); GPI anchor remodelling (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); hyperphosphatasia with impaired intellectual development syndrome 3 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog) NW_004955414 19607180 19630010 + 102008085 AGCD01015325;AGCD01015326;GBDF01082516;XM_005380026;XM_005380027;XM_005380028;XM_005380029;XM_013511899;XM_013511900;XM_013511901 XP_005380083;XP_005380084;XP_005380085;XP_005380086;XP_013367353;XP_013367354;XP_013367355 MODEL 8890792 ncrna LOC102018379 uncharacterized LOC102018379 NW_004955470 856113 859567 - 102018379 AGCD01052624;GBDF01054789;XR_263455 MODEL 8901149 protein-coding LOC102030025 olfactory receptor 4D2 ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog) NW_004955451 4839888 4840823 - 102030025 AGCD01043142;XM_005394036 XP_005394093 MODEL 39133542 snrna U4 U4 spliceosomal RNA 10277278 ncrna LOC106146533 uncharacterized LOC106146533 NW_004955407 16205432 16215740 + 106146533 AGCD01007209;GBDF01039285;XR_001231011 MODEL 8973431 protein-coding LOC102020546 uncharacterized LOC102020546 NW_004955465 5665005 5778527 + 102020546 AGCD01050431;AGCD01050432;AGCD01050433;GBDF01117484;XM_005398983 XP_005399040 MODEL 8866063 protein-coding Klhl40 kelch like family member 40 INVOLVED IN negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); negative regulation of protein ubiquitination (ortholog); positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); nemaline myopathy 8 (ortholog); FOUND IN A band (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955420 28117553 28122391 - 102024914 AGCD01021470;GBCB01006043;XM_005383531 XP_005383588 MODEL 9030127 protein-coding LOC102019560 uncharacterized LOC102019560 NW_004955403 51588408 51613490 - 102019560 AGCD01002995;AGCD01002996;GBDF01277743;XM_013514373;XM_013514376;XM_013514377;XM_013514383;XM_013514388;XM_013514389 XP_013369827;XP_013369830;XP_013369831;XP_013369837;XP_013369842;XP_013369843 MODEL 9046295 protein-coding Pigx phosphatidylinositol glycan anchor biosynthesis class X INVOLVED IN GPI anchor biosynthetic process (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-mannosyltransferase I complex (ortholog) NW_004955420 12825438 12853658 + 102024121 AGCD01020897;AGCD01020898;AGCD01020899;AGCD01020900;AGCD01020901;GBDF01156715;XM_005383594 XP_005383651 MODEL 8754680 protein-coding Tenm4 teneurin transmembrane protein 4 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cardiac cell fate specification (ortholog); cardiac muscle cell proliferation (ortholog); central nervous system myelin formation (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); cleft palate (ortholog); essential tremor 5 (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); neuron projection (ortholog) NW_004955414 12649128 13364523 + 102003113 AGCD01015101;AGCD01015102;AGCD01015103;AGCD01015104;AGCD01015105;AGCD01015106;GBCE01008780;XM_013511954;XM_013511955;XM_013511956;XM_013511957;XM_013511958;XM_013511959;XM_013511960;XM_013511961 XP_013367408;XP_013367409;XP_013367410;XP_013367411;XP_013367412;XP_013367413;XP_013367414;XP_013367415 MODEL 8712147 pseudo LOC102018014 endothelial differentiation-related factor 1 pseudogene NW_004955518 3788942 3789430 - 102018014 AGCD01067809 MODEL 9048342 protein-coding LOC102003076 EKC/KEOPS complex subunit LAGE3-like NW_004955585 16414 18078 + 102003076 AGCD01075989;AGCD01075990;GBDF01011008;XM_005414424;XM_005414425 XP_005414481;XP_005414482 MODEL 8709807 pseudo LOC102008830 ATP synthase F(0) complex subunit C3, mitochondrial pseudogene NW_004955464 13405011 13405720 + 102008830 AGCD01050275 MODEL 10123573 ncrna LOC106148050 uncharacterized LOC106148050 NW_004955415 17104719 17141816 + 106148050 AGCD01016409;GBCE01071059;XR_001233183 MODEL 8926152 protein-coding Tmigd2 transmembrane and immunoglobulin domain containing 2 ENCODES a protein that exhibits coreceptor activity (ortholog); INVOLVED IN positive regulation of activated T cell proliferation (ortholog); positive regulation of angiogenesis (ortholog); positive regulation of cytokine production (ortholog) NW_004955495 4561251 4578432 + 102008430 AGCD01061930;AGCD01061931;AGCD01061932;AGCD01061933;AGCD01061934;GBDK01263518;XM_005405795;XM_013505331;XM_013505332;XM_013505333;XM_013505334 XP_005405852;XP_013360785;XP_013360786;XP_013360787;XP_013360788 MODEL 8982280 protein-coding LOC102006204 hematopoietic prostaglandin D synthase NW_004955405 565811 595570 + 102006204 AGCD01004574;AGCD01004575;AGCD01004576;AGCD01004577;AGCD01004578;AGCD01004579;GBBH01172499;GBCE01033157;XM_013517297 XP_013372751 MODEL 8947281 pseudo LOC102023792 probable E3 ubiquitin-protein ligase HECTD2 pseudogene NW_004955466 13334048 13348086 - 102023792 AGCD01051156 MODEL 8767657 pseudo LOC102005858 40S ribosomal protein S4-like NW_004955575 415119 417705 + 102005858 AGCD01075221 MODEL 10367350 ncrna LOC106146402 uncharacterized LOC106146402 NW_004955477 281898 284238 + 106146402 AGCD01055485;GBDF01276898;XR_001230827 MODEL 9023165 protein-coding LOC102026561 olfactory receptor 4P4-like NW_004955511 307291 308540 + 102026561 AGCD01066327;XM_005408187 XP_005408244 MODEL 8976105 ncrna LOC102011951 uncharacterized LOC102011951 NW_004955455 571092 575802 - 102011951 AGCD01045562;XR_262804;XR_262805 MODEL 10290905 ncrna LOC106146955 uncharacterized LOC106146955 NW_004955507 3559630 3562063 - 106146955 AGCD01065631;GBDF01238579;XR_001231619 MODEL 8825026 protein-coding LOC102024088 transmembrane epididymal protein 1A-like NW_004955406 21319459 21320241 + 102024088 AGCD01006123;XM_005375465 XP_005375522 MODEL 9048968 pseudo LOC102028241 vesicle transport through interaction with t-SNAREs homolog 1B pseudogene NW_004955562 104035 104712 + 102028241 AGCD01073898 MODEL 8799521 protein-coding Lamtor5 late endosomal/lysosomal adaptor, MAPK and MTOR activator 5 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); cellular response to nutrient levels (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); glucose intolerance (ortholog); FOUND IN cytosol (ortholog); FNIP-folliculin RagC/D GAP (ortholog); lysosomal membrane (ortholog) NW_004955435 13896320 13900742 - 102026466 AGCD01033212;GBCB01000421;XM_013516568 XP_013372022 MODEL 8963933 protein-coding Spsb2 splA/ryanodine receptor domain and SOCS box containing 2 NW_004955413 4471696 4474282 - 102005580 AGCD01013617;GBCQ01008854;XM_005378837;XM_013511345 XP_005378894;XP_013366799 MODEL 8967317 pseudo LOC102007297 stromal membrane-associated protein 1 pseudogene NW_004955454 15354912 15356393 + 102007297 AGCD01045493 MODEL 9015823 pseudo LOC102018380 olfactory receptor 51F1-like NW_004955414 20378324 20379265 - 102018380 AGCD01015371 MODEL 8927634 protein-coding Shc2 SHC adaptor protein 2 NW_004955495 7216806 7236056 + 102017680 AGCD01062125;GBCB01098221;GBDF01153002;XM_013505336 XP_013360790 MODEL 8944601 pseudo LOC102012346 protein FAM184A pseudogene NW_004955428 4406203 4408237 + 102012346 AGCD01027690 MODEL 8904282 ncrna LOC102025501 uncharacterized LOC102025501 NW_004955522 1925722 1931476 - 102025501 AGCD01068364;GBDF01189542;XR_264615;XR_264616 MODEL 10299356 protein-coding LOC106146270 olfactory receptor 8K3-like NW_004955511 1311698 1312653 + 106146270 AGCD01066362;XM_013506372 XP_013361826 MODEL 8921232 protein-coding LOC102029339 uncharacterized LOC102029339 NW_004955572 981491 984288 + 102029339 AGCD01074933;GBDF01156250;XM_005413649;XM_005413650 XP_005413706;XP_005413707 MODEL 10388056 protein-coding LOC106148051 myelin-associated oligodendrocyte basic protein-like NW_004955415 1970123 1973676 - 106148051 AGCD01015887;XM_013512102 XP_013367556 MODEL 8824490 trna trnI tRNA-Ile MT 3680 3747 + 15822203 9059663 protein-coding Wwox WW domain containing oxidoreductase ENCODES a protein that exhibits enzyme binding (ortholog); identical protein binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN cellular response to transforming growth factor beta stimulus (ortholog); extrinsic apoptotic signaling pathway (ortholog); intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); autism spectrum disorder (ortholog); autosomal recessive spinocerebellar ataxia 12 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955522 1265732 2185372 + 102026035 AGCD01068359;AGCD01068360;AGCD01068361;AGCD01068362;AGCD01068363;AGCD01068364;AGCD01068365;GBDF01158326;GBDF01158329;XM_013507098 XP_013362552 MODEL 8862013 pseudo LOC102004452 60S ribosomal protein L31 pseudogene NW_004955453 3310962 3311426 + 102004452 AGCD01044654;XM_005395701 MODEL 8768533 protein-coding P2ry2 purinergic receptor P2Y2 ENCODES a protein that exhibits A1 adenosine receptor binding (ortholog); ATP binding (ortholog); G protein-coupled UTP receptor activity (ortholog); INVOLVED IN blood vessel diameter maintenance (ortholog); cellular response to interleukin-1 (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH Dehydration (ortholog); impotence (ortholog); Reperfusion Injury (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); early endosome (ortholog) NW_004955414 18248082 18271047 - 102017763 AGCD01015274;AGCD01015275;AGCD01015276;GBBH01093715;XM_005379957;XM_005379958;XM_005379960;XM_005379961;XM_013511812;XM_013511813;XM_013511814;XM_013511815;XM_013511816;XR_001233104 XP_005380014;XP_005380015;XP_005380017;XP_005380018;XP_013367266;XP_013367267;XP_013367268;XP_013367269;XP_013367270 MODEL 8841146 protein-coding Ier5 immediate early response 5 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN cellular response to heat (ortholog); positive regulation of cellular response to heat (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); protein phosphatase type 2A complex (ortholog) NW_004955406 20140510 20143147 + 102023432 AGCD01006098;AGCD01006099;GBBH01117662;GBDF01075618;XM_013521367 XP_013376821 MODEL 39133345 snorna SNORD123 small nucleolar RNA, C/D box 123 8830357 protein-coding Pgap3 post-GPI attachment to proteins phospholipase 3 ENCODES a protein that exhibits hydrolase activity, acting on ester bonds (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); GPI anchor remodelling (ortholog); GPI anchored protein biosynthesis (ortholog); ASSOCIATED WITH allergic asthma (ortholog); chronic asthma (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic vesicle (ortholog); Golgi membrane (ortholog) NW_004955451 14418923 14428032 - 102029353 AGCD01043552;GBCE01029380;XM_005394317;XM_005394318 XP_005394374;XP_005394375 MODEL 8913736 protein-coding Saxo6 stabilizer of axonemal microtubules 6 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN negative regulation of centriole replication (ortholog); retina development in camera-type eye (ortholog); ASSOCIATED WITH Kuhnt-Junius degeneration (ortholog); Neurodevelopmental Disorders (ortholog); retinal degeneration (ortholog); FOUND IN centriolar satellite (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955458 14789842 14823117 - 102029593 AGCD01047847;AGCD01047848;AGCD01047849;GBDF01122670;XM_005397470;XM_005397471;XM_005397474;XM_013521000;XM_013521002;XM_013521003;XM_013521004;XM_013521005;XM_013521006 XP_005397527;XP_005397528;XP_005397531;XP_013376454;XP_013376456;XP_013376457;XP_013376458;XP_013376459;XP_013376460 MODEL 8976646 protein-coding LOC102028242 uncharacterized LOC102028242 NW_004955445 8035741 8060348 - 102028242 AGCD01039557;GBCB01091146;XM_013518361;XM_013518362;XM_013518363 XP_013373815;XP_013373816;XP_013373817 MODEL 8965781 protein-coding ND6 NADH dehydrogenase subunit 6 MT 13564 14091 - 15822213 JX312692 AFQ55788;YP_008080756 REVIEWED 8909361 protein-coding LOC102030026 prolactin-like NW_004955631 2705 110924 + 102030026 AGCD01077529;AGCD01077530;AGCD01077531;AGCD01077532;AGCD01077533;AGCD01077534;AGCD01077535;AGCD01077536;AGCD01077537;AGCD01077538;AGCD01077539;AGCD01077540;AGCD01077541;AGCD01077542;AGCD01077543;AGCD01077544;AGCD01077545;AGCD01077546;AGCD01077547;AGCD01077548;AGCD01077549;AGCD01077550;AGCD01077551;AGCD01077552;AGCD01077553;AGCD01077554;AGCD01077555;AGCD01077556;AGCD01077557;AGCD01077558;AGCD01077559;XM_005415039 XP_005415096 MODEL 8973463 ncrna LOC102021351 uncharacterized LOC102021351 NW_004955485 4631152 4633682 - 102021351 AGCD01058572;GBDF01010932;XR_263905 MODEL 8826709 protein-coding Ercc4 ERCC excision repair 4, endonuclease catalytic subunit ENCODES a protein that exhibits 3' overhang single-stranded DNA endonuclease activity (ortholog); damaged DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN cellular response to UV (ortholog); DNA repair (ortholog); double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); autosomal recessive cerebellar ataxia (ortholog); B-cell acute lymphoblastic leukemia (ortholog); FOUND IN chromosome (ortholog); chromosome, telomeric region (ortholog); ERCC4-ERCC1 complex (ortholog) NW_004955442 4833453 4861201 - 102018773 AGCD01037543;AGCD01037544;AGCD01037545;GBDI01017324;XM_005391144;XM_013517964 XP_005391201;XP_013373418 MODEL 8736575 ncrna LOC102020547 uncharacterized LOC102020547 NW_004955466 9565453 9567673 + 102020547 AGCD01051047;GBCC01009470;XR_263302 MODEL 8778891 protein-coding Slc26a6 solute carrier family 26 member 6 ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); chloride transmembrane transporter activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); INVOLVED IN angiotensin-activated signaling pathway (ortholog); bicarbonate transport (ortholog); cellular response to cAMP (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Hyperoxaluria (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog) NW_004955532 713725 723190 - 102029898 AGCD01070149;GBCB01025330;XM_005410162;XM_005410163;XM_005410164;XM_013507633;XM_013507634;XM_013507635;XM_013507636 XP_005410219;XP_005410220;XP_005410221;XP_013363087;XP_013363088;XP_013363089;XP_013363090 MODEL 10158233 ncrna LOC106150066 uncharacterized LOC106150066 NW_004955463 8607571 8738500 + 106150066 AGCD01049766;AGCD01049767;AGCD01049768;GBDF01305926;XR_001236648 MODEL 8996898 ncrna LOC102027603 uncharacterized LOC102027603 NW_004955452 1413710 1447433 + 102027603 AGCD01043847;AGCD01043848;GBDF01280328;XR_001236042;XR_001236043;XR_001236044;XR_262633;XR_262634;XR_262635 MODEL 8917095 protein-coding LOC102025147 mannose-binding protein A-like NW_004955510 239781 243643 - 102025147 AGCD01066142;GBDF01235188;XM_005407864;XM_005407865;XM_013506332 XP_005407921;XP_005407922;XP_013361786 MODEL 8881058 protein-coding LOC102003080 interleukin-1 receptor type 1-like NW_004955756 6773 24480 + 102003080 AGCD01078281;GBCB01092471;GBDK01182668;XM_005415091 XP_005415148 MODEL 8734363 pseudo LOC102015328 guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 pseudogene NW_004955425 22681002 22682303 + 102015328 AGCD01025827;XM_005386021 MODEL 8927955 protein-coding LOC102009205 olfactory receptor 5AN1-like NW_004955511 3886762 3887700 - 102009205 AGCD01066481;XM_005408267 XP_005408324 MODEL 10367355 ncrna LOC106146675 uncharacterized LOC106146675 NW_004955491 5445415 5456631 - 106146675 AGCD01060483;GBDI01143676;XR_001231217 MODEL 9037669 protein-coding LOC102012347 uncharacterized LOC102012347 NW_004955508 3322424 3325128 + 102012347 AGCD01065806;GBCQ01193228;XM_005407736 XP_005407793 MODEL 8880453 protein-coding LOC102006209 uncharacterized LOC102006209 NW_004955406 38742352 38743020 + 102006209 AGCD01006609;XM_005375478 XP_005375535 MODEL 10170179 protein-coding LOC106146403 putative uncharacterized protein ZNRD1-AS1 homolog NW_004955477 293758 299197 + 106146403 AGCD01055485;GBDF01088278;XM_013503061 XP_013358515 MODEL 10321395 protein-coding LOC106149244 uncharacterized LOC106149244 NW_004955441 14979326 14987199 + 106149244 AGCD01037236;AGCD01037237;GBDK01254120;XM_013517519 XP_013372973 MODEL 9045173 protein-coding Bgn biglycan ENCODES a protein that exhibits cytokine binding (ortholog); extracellular matrix binding (ortholog); glycosaminoglycan binding (ortholog); INVOLVED IN articular cartilage development (ortholog); blood vessel remodeling (ortholog); bone development (ortholog); ASSOCIATED WITH aortic disease (ortholog); Breast Neoplasms (ortholog); dilated cardiomyopathy (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog); sarcolemma (ortholog) NW_004955580 252183 263179 + 102010847 AGCD01075593;GBCE01004164;XM_005414120;XM_005414121 XP_005414177;XP_005414178 MODEL 8937820 ncrna LOC102024089 uncharacterized LOC102024089 NW_004955456 2073926 2095524 - 102024089 AGCD01046246;AGCD01046247;GBDF01286846;XR_262868 MODEL 8768950 protein-coding LOC102011956 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955456 13079418 13133056 - 102011956 AGCD01046578;GBDK01016339;XM_013520498;XM_013520499;XM_013520500;XM_013520502;XM_013520503;XM_013520504;XM_013520505 XP_013375952;XP_013375953;XP_013375954;XP_013375956;XP_013375957;XP_013375958;XP_013375959 MODEL 8997702 protein-coding Pnp purine nucleoside phosphorylase ENCODES a protein that exhibits guanosine phosphorylase activity (ortholog); identical protein binding (ortholog); nucleoside binding (ortholog); INVOLVED IN allantoin metabolic process (ortholog); dAMP catabolic process (ortholog); deoxyadenosine catabolic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955550 1290816 1299553 + 102026162 AGCD01072560;GBCE01002066;XM_005412065 XP_005412122 MODEL 8872107 ncrna LOC102009985 uncharacterized LOC102009985 NW_004955532 2292201 2295717 + 102009985 AGCD01070223;GBDF01097912;XR_264728 MODEL 39133543 snrna U4 U4 spliceosomal RNA 8873012 ncrna LOC102018016 uncharacterized LOC102018016 NW_004955433 19172341 19176616 + 102018016 AGCD01031860;XR_261599 MODEL 8942710 protein-coding Pigy phosphatidylinositol glycan anchor biosynthesis class Y ENCODES a protein that exhibits phosphatidylinositol N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); ASSOCIATED WITH hyperphosphatasia with impaired intellectual development syndrome (ortholog); hyperphosphatasia with impaired intellectual development syndrome 6 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (ortholog); plasma membrane (ortholog) NW_004955474 11945871 11946419 + 102024220 AGCD01054643;XM_005401449 XP_005401506 MODEL 9037775 gene LOC102018382 Ig heavy chain V-I region 5-like NW_004955470 467752 468318 - 102018382 AGCD01052614;XM_005400820 MODEL 9044648 ncrna LOC102019563 uncharacterized LOC102019563 NW_004955405 18550190 18557677 + 102019563 AGCD01005021;GBCE01080090;XR_259388 MODEL 8753282 protein-coding Klhl41 kelch like family member 41 INVOLVED IN myofibril assembly (ortholog); protein ubiquitination (ortholog); pseudopodium assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); hypertrophic cardiomyopathy (ortholog); nemaline myopathy (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog) NW_004955449 5023362 5041006 - 102029459 AGCD01041906;GBCB01003153;XM_005393263 XP_005393320 MODEL 8834570 protein-coding Tent2 terminal nucleotidyltransferase 2 ENCODES a protein that exhibits poly(A) RNA polymerase activity (ortholog); INVOLVED IN dark adaptation (ortholog); hematopoietic progenitor cell differentiation (ortholog); hippocampus development (ortholog); FOUND IN glutamatergic synapse (ortholog); nucleus (ortholog); perforant pathway to dendrate granule cell synapse (ortholog) NW_004955425 21518154 21576068 - 102012221 AGCD01025798;GBDF01154485;XM_005386009;XM_005386010 XP_005386066;XP_005386067 MODEL 8880070 pseudo LOC102026916 G protein pathway suppressor 2 pseudogene NW_004955557 1239674 1240313 + 102026916 AGCD01073283 MODEL 8795020 protein-coding LOC102023795 T-cell surface glycoprotein CD1b2-like NW_004955468 10148815 10152677 + 102023795 AGCD01052067;AGCD01052068;GBDI01000190;XM_005400145 XP_005400202 MODEL 8929206 protein-coding LOC102005859 RE1-silencing transcription factor NW_004955447 14183770 14196122 - 102005859 AGCD01040989;GBBH01193455;GBCE01108856;XM_013518551 XP_013374005 MODEL 10282803 ncrna LOC106148052 uncharacterized LOC106148052 NW_004955415 32550254 32551808 + 106148052 AGCD01016725;GBDF01089314;XR_001233185 MODEL 8823120 trna trnK(ttt) tRNA-Lys MT 7704 7770 + 15822206 9026781 protein-coding LOC102004456 keratin-associated protein 20-2-like NW_004955407 30031156 30031311 - 102004456 AGCD01007623;XM_005375633 XP_005375690 MODEL 8782764 protein-coding LOC102007299 keratin-associated protein 20-2-like NW_004955407 30163388 30163546 + 102007299 AGCD01007628;XM_005375641 XP_005375698 MODEL 8970579 protein-coding Lancl1 LanC like glutathione S-transferase 1 ENCODES a protein that exhibits glutathione binding (ortholog); glutathione transferase activity (ortholog); low-density lipoprotein particle receptor binding (ortholog); INVOLVED IN cellular detoxification (ortholog); G protein-coupled receptor signaling pathway (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog) NW_004955457 5055774 5087570 + 102028058 AGCD01046806;GBDF01003643;GBDF01003644;XM_013520773 XP_013376227 MODEL 8924426 ncrna LOC102003404 uncharacterized LOC102003404 NW_004955404 18428351 18441554 + 102003404 AGCD01003616;GBDF01251601;XR_259317 MODEL 8700366 protein-coding LOC102008833 olfactory receptor 1F12 NW_004955465 13529663 13530604 + 102008833 AGCD01050613;XM_005398956 XP_005399013 MODEL 8722816 protein-coding Shc3 SHC adaptor protein 3 ENCODES a protein that exhibits phosphotyrosine residue binding (ortholog); INVOLVED IN learning or memory (ortholog); synaptic transmission, glutamatergic (ortholog); ASSOCIATED WITH Ependymomas (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955515 2858971 3016467 + 102017690 AGCD01067260;AGCD01067261;AGCD01067262;AGCD01067263;AGCD01067264;AGCD01067265;AGCD01067266;AGCD01067267;GBDI01163152;GBDI01244672;XM_005408881 XP_005408938 MODEL 8851182 protein-coding LOC102028246 EGF-like and EMI domain-containing protein 1 NW_004955448 17881646 17965623 + 102028246 AGCD01041727;AGCD01041728;AGCD01041729;AGCD01041730;AGCD01041731;XM_013518593 XP_013374047 MODEL 8738210 protein-coding Tmlhe trimethyllysine hydroxylase, epsilon ENCODES a protein that exhibits oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (ortholog); trimethyllysine dioxygenase activity (ortholog); INVOLVED IN carnitine biosynthetic process (ortholog); PARTICIPATES IN carnitine biosynthetic pathway; ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); autistic disorder (ortholog); cerebellar hypoplasia (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955594 272668 329997 + 102022765 AGCD01076425;AGCD01076426;GBBH01138990;XM_005414642;XM_013510005 XP_005414699;XP_013365459 MODEL 9011031 protein-coding LOC102009987 trem-like transcript 4 protein NW_004955437 7799753 7806865 - 102009987 AGCD01034469;GBBH01047078;XM_005389681;XM_013517047;XM_013517048 XP_005389738;XP_013372501;XP_013372502 MODEL 10328898 ncrna LOC106146956 uncharacterized LOC106146956 NW_004955507 1656776 1667721 + 106146956 AGCD01065569;XR_001231622;XR_001231623 MODEL 10386954 ncrna LOC106150067 uncharacterized LOC106150067 NW_004955463 13702644 13731579 - 106150067 AGCD01049885;GBDF01225662;XR_001236649 MODEL 8747419 protein-coding LOC102003083 zinc finger and SCAN domain-containing protein 4-like NW_004956963 711 1829 + 102003083 AGCD01080359;XM_013510241 XP_013365695 MODEL 8860434 pseudo LOC102025507 myb/SANT-like DNA-binding domain-containing protein 4 NW_004955534 1844820 1857195 + 102025507 AGCD01070509;AGCD01070510 MODEL 8727184 protein-coding LOC102029340 UDP-glucuronosyltransferase 2B17-like NW_004955447 3892500 3921299 + 102029340 AGCD01040684;AGCD01040685;AGCD01040686;AGCD01040687;GBDJ01074834;XM_005392950 XP_005393007 MODEL 8806576 protein-coding LOC102012348 ankyrin repeat domain-containing protein 26-like NW_004955429 6598602 6603032 - 102012348 AGCD01028554;XM_013515351 XP_013370805 MODEL 8864207 protein-coding Klhl42 kelch like family member 42 ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); protein polyubiquitination (ortholog); regulation of microtubule-based process (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog) NW_004955505 7046274 7078175 - 102019934 AGCD01065194;AGCD01065195;GBCQ01032727;XM_005407157 XP_005407214 MODEL 8780271 protein-coding Sparc secreted protein acidic and cysteine rich ENCODES a protein that exhibits calcium ion binding (ortholog); collagen binding (ortholog); extracellular matrix binding (ortholog); INVOLVED IN bone development (ortholog); cellular response to growth factor stimulus (ortholog); heart development (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adrenocortical carcinoma (ortholog); Brain Injuries (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular matrix (ortholog) NW_004955408 6100123 6122460 - 102021944 AGCD01008164;GBDF01263214;XM_005376165;XM_005376166;XM_005376167 XP_005376222;XP_005376223;XP_005376224 MODEL 10114083 pseudo LOC106149245 tRNA-splicing ligase RtcB homolog pseudogene NW_004955441 15064198 15070035 + 106149245 AGCD01037241 MODEL 8867165 protein-coding Pgap4 post-GPI attachment to proteins GalNAc transferase 4 ENCODES a protein that exhibits glycosyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955419 24334402 24344390 + 102009059 AGCD01020342;GBCE01045694;XM_005382800 XP_005382857 MODEL 9064832 protein-coding P2ry4 pyrimidinergic receptor P2Y4 ENCODES a protein that exhibits ATP binding (ortholog); G protein-coupled UTP receptor activity (ortholog); INVOLVED IN cellular response to prostaglandin E stimulus (ortholog); regulation of presynaptic cytosolic calcium ion concentration (ortholog); regulation of synaptic vesicle exocytosis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); glutamatergic synapse (ortholog) NW_004955475 9794538 9802055 - 102021654 AGCD01055075;GBCC01043486;XM_005401615;XM_005401616;XM_013502797 XP_005401672;XP_005401673;XP_013358251 MODEL 8941324 protein-coding Bhlha15 basic helix-loop-helix family member a15 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); cell differentiation (ortholog); cell maturation (ortholog); FOUND IN nucleus (ortholog) NW_004955460 14103053 14106714 + 102028274 AGCD01048738;GBDF01053345;XM_005397913;XR_263065 XP_005397970 MODEL 8816820 protein-coding Spsb3 splA/ryanodine receptor domain and SOCS box containing 3 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN negative regulation of cGAS/STING signaling pathway (ortholog); negative regulation of epithelial to mesenchymal transition (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog); nucleus (ortholog) NW_004955442 15486845 15493422 + 102020723 AGCD01037875;GBBH01143805;XM_005391518;XM_005391520;XM_005391521;XM_005391522;XM_005391523 XP_005391575;XP_005391577;XP_005391578;XP_005391579;XP_005391580 MODEL 8843474 pseudo LOC102024094 coiled-coil domain-containing protein 152 pseudogene NW_004955458 3065969 3066651 + 102024094 AGCD01047269 MODEL 8715244 trna trnL1(tag) tRNA-Leu MT 11681 11750 + 15822232 10153402 ncrna LOC106148053 uncharacterized LOC106148053 NW_004955415 745314 750678 - 106148053 AGCD01015853;GBDI01338919;XR_001233187 MODEL 8749243 pseudo LOC102018383 E3 ubiquitin-protein ligase RNF13 pseudogene NW_004955472 5453123 5454314 + 102018383 AGCD01053579 MODEL 8903699 pseudo LOC102027605 asparagine--tRNA ligase, cytoplasmic pseudogene NW_004955404 37031089 37035719 - 102027605 AGCD01004197 MODEL 8889844 protein-coding Slc26a7 solute carrier family 26 member 7 ENCODES a protein that exhibits bicarbonate transmembrane transporter activity (ortholog); chloride channel activity (ortholog); chloride:bicarbonate antiporter activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); chloride transport (ortholog); gastric acid secretion (ortholog); ASSOCIATED WITH congenital hypothyroidism (ortholog); genetic disease (ortholog); Hyperoxaluria (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cytoplasm (ortholog) NW_004955417 7977292 8127241 + 102014355 AGCD01018019;AGCD01018020;AGCD01018021;GBDF01075118;XM_005381771;XM_005381772;XM_005381773;XM_013512844 XP_005381828;XP_005381829;XP_005381830;XP_013368298 MODEL 8725005 protein-coding LOC102025149 olfactory receptor 1013-like NW_004955511 1785957 1786877 + 102025149 AGCD01066380;XM_005408244 XP_005408301 MODEL 8836932 pseudo LOC102015330 bisphosphoglycerate mutase-like NW_004955501 6853024 6853772 + 102015330 AGCD01064202 MODEL 9065783 protein-coding Ercc5 ERCC excision repair 5, endonuclease ENCODES a protein that exhibits bubble DNA binding (ortholog); damaged DNA binding (ortholog); DNA endonuclease activity (ortholog); INVOLVED IN base-excision repair, AP site formation (ortholog); determination of adult lifespan (ortholog); DNA repair (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH cerebrooculofacioskeletal syndrome 3 (ortholog); Cockayne syndrome (ortholog); Colorectal Neoplasms (ortholog); FOUND IN chromosome (ortholog); DNA replication factor A complex (ortholog); nucleoplasm (ortholog) NW_004955404 8294506 8321505 - 102028608 AGCD01003350;GBDK01132700;XM_005374021 XP_005374078 MODEL 10272811 protein-coding LOC106146272 zinc finger protein 709-like NW_004955499 529117 534194 - 106146272 AGCD01063236;GBCQ01115328;XM_013505571 XP_013361025 MODEL 8882764 pseudo LOC102006212 adenosine deaminase-like protein pseudogene NW_004955407 20334537 20335032 - 102006212 AGCD01007327 MODEL 151707877 snorna SNORD124 small nucleolar RNA, C/D box 124 8750033 protein-coding Ier5l immediate early response 5 like NW_004955570 1479582 1482281 - 102026053 AGCD01074814;AGCD01074815;GBCE01054506;GBCQ01097922;XM_013509437 XP_013364891 MODEL 8717033 protein-coding LOC102026920 NXPE family member 3-like NW_004955573 684923 715573 + 102026920 AGCD01075002;AGCD01075003;GBDF01217033;XM_005413739 XP_005413796 MODEL 10248234 ncrna LOC106146404 uncharacterized LOC106146404 NW_004955477 3917889 3934917 + 106146404 AGCD01055577;GBCQ01189217;XR_001230828 MODEL 8828676 pseudo LOC102003085 translationally-controlled tumor protein pseudogene NW_004955404 18220065 18220653 + 102003085 AGCD01003611 MODEL 9063557 ncrna LOC102030027 uncharacterized LOC102030027 NW_004955403 45557566 45565504 + 102030027 AGCD01002820;AGCD01002821;GBBH01104469;XR_259239 MODEL 8743600 ncrna LOC102011960 uncharacterized LOC102011960 NW_004955459 5331828 5338432 - 102011960 AGCD01048044;XR_263016 MODEL 39133544 snrna U4 U4 spliceosomal RNA 8986239 protein-coding Saysd1 SAYSVFN motif domain containing 1 ENCODES a protein that exhibits UFM1-modified protein reader activity (ortholog); INVOLVED IN protein quality control for misfolded or incompletely synthesized proteins (ortholog); rescue of stalled cytosolic ribosome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955437 4369140 4375405 + 102013002 AGCD01034364;GBDF01005767;XM_005389604 XP_005389661 MODEL 8932569 pseudo LOC102026564 E3 ubiquitin-protein ligase RNF13-like NW_004955518 134759 136000 + 102026564 AGCD01067719 MODEL 8701326 protein-coding LOC102018017 olfactory receptor 2J3-like NW_004955524 45694 46627 + 102018017 AGCD01068663;XM_013507226 XP_013362680 MODEL 41410891 protein-coding PIGZ phosphatidylinositol glycan anchor biosynthesis class Z 8915093 protein-coding Lancl2 LanC like glutathione S-transferase 2 ENCODES a protein that exhibits phosphatidylinositol-3-phosphate binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); phosphatidylinositol-5-phosphate binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of abscisic acid-activated signaling pathway (ortholog); FOUND IN cortical actin cytoskeleton (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955456 204434 250143 - 102022358 AGCD01046201;AGCD01046202;GBBH01188059;GBDF01001312;XM_013520628 XP_013376082 MODEL 8817656 pseudo LOC102028247 stromal membrane-associated protein 1-like NW_004955583 30223 40810 + 102028247 AGCD01075791 MODEL 8776985 pseudo LOC102009207 THO complex subunit 4-like NW_004955512 905817 925046 + 102009207 AGCD01066626 MODEL 8965219 protein-coding Bhlha9 basic helix-loop-helix family member a9 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); ASSOCIATED WITH Complex Camptosynpolydactyly (ortholog); genetic disease (ortholog); Mesoaxial Synostotic Syndactyly with Phalangeal Reduction (ortholog); FOUND IN cytoplasm (ortholog) NW_004955481 2769023 2770269 + 102007769 AGCD01056883;AGCD01056884;XM_005402922 XP_005402979 MODEL 8805733 protein-coding Shc4 SHC adaptor protein 4 ENCODES a protein that exhibits protein domain specific binding (ortholog); receptor tyrosine kinase binding (ortholog); INVOLVED IN apoptotic process (ortholog); positive regulation of cell population proliferation (ortholog); regulation of gene expression (ortholog) NW_004955409 5000209 5111352 + 102010874 AGCD01009306;AGCD01009307;GBDF01188743;XM_005376697 XP_005376754 MODEL 8986562 protein-coding Tmod1 tropomodulin 1 ENCODES a protein that exhibits actin binding (ortholog); tropomyosin binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); lens fiber cell development (ortholog); muscle contraction (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); dilated cardiomyopathy (ortholog); ovarian cyst (ortholog); FOUND IN actin filament (ortholog); COP9 signalosome (ortholog); cortical cytoskeleton (ortholog) NW_004955419 27841424 27915540 - 102025465 AGCD01020448;AGCD01020449;GBCE01052215;XM_005382850 XP_005382907 MODEL 9020795 protein-coding Tent4a terminal nucleotidyltransferase 4A ENCODES a protein that exhibits guanylyltransferase activity (ortholog); INVOLVED IN negative regulation of nuclear-transcribed mRNA poly(A) tail shortening (ortholog); positive regulation of 3'-UTR-mediated mRNA stabilization (ortholog); response to xenobiotic stimulus (ortholog); PARTICIPATES IN nucleotide excision repair pathway; FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955504 4443051 4476373 + 102015746 AGCD01064885;GBBH01207209;GBDI01113697;XM_005407069;XM_005407070 XP_005407126;XP_005407127 MODEL 8739209 ncrna LOC102025510 uncharacterized LOC102025510 NW_004955538 3123047 3148862 - 102025510 AGCD01071149;AGCD01071150;AGCD01071151;GBBH01014799;XR_001232096;XR_001232097;XR_001232098;XR_264807 MODEL 8999355 pseudo LOC102004458 protein regulator of cytokinesis 1 pseudogene NW_004955408 33268665 33270602 + 102004458 AGCD01008866 MODEL 8793980 protein-coding Ndc1 NDC1 transmembrane nucleoporin ENCODES a protein that exhibits structural constituent of nuclear pore (ortholog); INVOLVED IN homologous chromosome pairing at meiosis (ortholog); nuclear pore complex assembly (ortholog); nuclear pore localization (ortholog); ASSOCIATED WITH Developmental Disabilities (ortholog); Weight Gain (ortholog); FOUND IN cytoplasm (ortholog); nuclear envelope (ortholog); nuclear membrane (ortholog) NW_004955464 5424710 5476657 + 102010680 AGCD01050006;AGCD01050007;AGCD01050008;AGCD01050009;GBDF01085204;XM_005398557 XP_005398614 MODEL 8942950 protein-coding Pnpla1 patatin like domain 1, omega-hydroxyceramide transacylase ENCODES a protein that exhibits acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); omega-hydroxyceramide transacylase activity (ortholog); structural constituent of skin epidermis (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); establishment of skin barrier (ortholog); keratinocyte differentiation (ortholog); ASSOCIATED WITH autosomal recessive congenital ichthyosis (ortholog); autosomal recessive congenital ichthyosis 10 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog) NW_004955437 4008814 4047895 + 102008889 AGCD01034359;GBCQ01173759;XM_013517129;XM_013517130 XP_013372583;XP_013372584 MODEL 8952073 protein-coding LOC102007302 chromosome unknown open reading frame, human C7orf57 NW_004955456 5399326 5414002 - 102007302 AGCD01046327;GBDK01321191;XM_005396629 XP_005396686 MODEL 10111418 ncrna LOC106146676 uncharacterized LOC106146676 NW_004955491 5495906 5497534 + 106146676 AGCD01060484;GBCE01035135;XR_001231218 MODEL 8783306 ncrna LOC102003405 uncharacterized LOC102003405 NW_004955452 4390516 4398593 - 102003405 AGCD01043981;GBDK01434065;XR_262649 MODEL 8702457 protein-coding Sparcl1 SPARC like 1 INVOLVED IN regulation of synapse organization (ortholog); synaptic membrane adhesion (ortholog); ASSOCIATED WITH corneal dystrophy (ortholog); endometriosis (ortholog); epilepsy (ortholog); FOUND IN extracellular matrix of synaptic cleft (ortholog); glutamatergic synapse (ortholog) NW_004955474 2352662 2387237 + 102015104 AGCD01054289;AGCD01054290;AGCD01054291;GBDJ01018536;XM_005401335;XM_013502717 XP_005401392;XP_013358171 MODEL 8925791 protein-coding Spsb4 splA/ryanodine receptor domain and SOCS box containing 4 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN positive regulation of protein polyubiquitination (ortholog); protein ubiquitination (ortholog); regulation of circadian rhythm (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytosol (ortholog) NW_004955508 4539531 4615439 - 102022520 AGCD01065874;AGCD01065875;GBDJ01092850;XM_005407774;XM_005407775 XP_005407831;XP_005407832 MODEL 8793798 protein-coding Wwp1 WW domain containing E3 ubiquitin protein ligase 1 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); protein ubiquitination (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Wolff-Parkinson-White syndrome (ortholog); FOUND IN anchoring junction (ortholog); cytoplasm (ortholog); plasma membrane (ortholog) NW_004955417 4011302 4064584 + 102006455 AGCD01017935;AGCD01017936;AGCD01017937;GBCC01046163;XM_013512748;XM_013512749;XM_013512750 XP_013368202;XP_013368203;XP_013368204 MODEL 8714944 ncrna LOC102023797 uncharacterized LOC102023797 NW_004955471 5896019 5897182 + 102023797 AGCD01053115;GBDF01054811;XR_263526 MODEL 10176906 protein-coding LOC106146534 histone H2A type 1 NW_004955483 785114 785605 + 106146534 AGCD01057630;XM_013503793 XP_013359247 MODEL 8723944 pseudo LOC102005865 transcription factor BTF3 homolog 4 pseudogene NW_004955588 220604 221041 + 102005865 AGCD01076095 MODEL 10342550 pseudo LOC106146957 selenoprotein W pseudogene NW_004955507 5582627 5583900 + 106146957 AGCD01065679 MODEL 10193152 ncrna LOC106150068 uncharacterized LOC106150068 NW_004955463 1326927 1328916 - 106150068 AGCD01049509;XR_001236650 MODEL 8773218 ncrna LOC102015331 uncharacterized LOC102015331 NW_004955427 9210802 9219071 - 102015331 AGCD01027094;GBDF01040198;XR_261246 MODEL 8883826 protein-coding LOC102009989 putative uncharacterized protein encoded by LINC00521 NW_004955438 16063238 16071161 + 102009989 AGCD01035395;GBDF01002712;XM_005390358;XM_005390359;XM_005390360;XM_005390361;XM_005390362 XP_005390415;XP_005390416;XP_005390417;XP_005390418;XP_005390419 MODEL 8857221 protein-coding LOC102025154 zinc finger protein 85-like NW_004955432 4681460 4704789 - 102025154 AGCD01030733;AGCD01030734;AGCD01030735;AGCD01030736;AGCD01030737;GBBH01213954;GBCQ01068809;XM_013515932 XP_013371386 MODEL 8967496 ncrna LOC102012357 uncharacterized LOC102012357 NW_004955436 8984095 9017211 + 102012357 AGCD01033755;GBDF01158995;XR_261779;XR_261780 MODEL 8987433 protein-coding LOC102029342 butyrophilin subfamily 1 member A1-like NW_004955581 1084165 1110325 + 102029342 AGCD01075707;AGCD01075708;GBBH01227591;XM_013509733 XP_013365187 MODEL 8904727 protein-coding LOC102021360 heat shock transcription factor, Y-linked-like NW_004955494 8274458 8275841 - 102021360 AGCD01061582;GBDF01086027;XM_005405513 XP_005405570 MODEL 8747471 pseudo LOC102006216 mitochondrial calcium uniporter regulator 1 pseudogene NW_004955408 1490717 1491878 + 102006216 AGCD01007960 MODEL 8829520 protein-coding Pgap6 post-GPI attachment to proteins 6 FOUND IN lysosomal membrane (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955442 16821275 16830275 + 102028905 AGCD01037917;GBCE01115676;GBDK01128164;XM_013517743 XP_013373197 MODEL 9055312 protein-coding Tmod2 tropomodulin 2 ENCODES a protein that exhibits actin binding (ortholog); tropomyosin binding (ortholog); INVOLVED IN learning or memory (ortholog); neuron-neuron synaptic transmission (ortholog); positive regulation of G protein-coupled receptor signaling pathway (ortholog); FOUND IN growth cone (ortholog) NW_004955409 2801173 2842717 - 102020985 AGCD01009220;AGCD01009221;AGCD01009222;GBBH01101003;XM_005376636;XM_005376637 XP_005376693;XP_005376694 MODEL 8918534 protein-coding LOC102019567 zinc finger protein 85-like NW_004955454 7180326 7196465 + 102019567 AGCD01045284;AGCD01045285;AGCD01045286;GBDI01206872;XM_013520198 XP_013375652 MODEL 8772446 ncrna LOC102024095 uncharacterized LOC102024095 NW_004955460 10079307 10081202 + 102024095 AGCD01048572;GBDF01161695;XR_263045 MODEL 8843669 trna trnL2 tRNA-Leu MT 2643 2718 + 15822217 8893433 protein-coding LOC102003087 eukaryotic translation initiation factor 1A, X-chromosomal-like NW_004955405 22619382 22620342 + 102003087 AGCD01005097;GBDF01111439;XM_005374400 XP_005374457 MODEL 8852833 protein-coding Tent4b terminal nucleotidyltransferase 4B ENCODES a protein that exhibits guanylyltransferase activity (ortholog); poly(A) RNA polymerase activity (ortholog); telomerase RNA binding (ortholog); INVOLVED IN carbohydrate homeostasis (ortholog); histone mRNA catabolic process (ortholog); miRNA catabolic process (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955433 8288432 8347347 + 102014936 AGCD01031590;AGCD01031591;GBCE01037318;GBDI01292921;XM_005388265;XM_005388268 XP_005388322;XP_005388325 MODEL 8957875 protein-coding LOC102008838 V-set and immunoglobulin domain-containing protein 8 NW_004955468 11648880 11658624 - 102008838 AGCD01052136;GBDK01042318;XM_005400177;XM_005400178 XP_005400234;XP_005400235 MODEL 8914510 pseudo LOC102027607 UDP-glucuronosyltransferase 1-9-like NW_004955453 2505093 2506274 - 102027607 AGCD01044630 MODEL 8831768 protein-coding LOC102026567 uncharacterized protein C10orf95-like NW_004955437 16728865 16731915 - 102026567 AGCD01034707;AGCD01034708;XM_005389917;XR_261882 XP_005389974 MODEL 8832485 protein-coding LOC102018388 zinc finger protein 791-like NW_004955415 33148948 33168071 - 102018388 AGCD01016753;AGCD01016754;GBDF01124083;XM_005381109;XM_005381111;XM_013512175;XM_013512176 XP_005381166;XP_005381168;XP_013367629;XP_013367630 MODEL 8836136 protein-coding Pnpla2 patatin like domain 2, triacylglycerol lipase ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); acylglycerol O-acyltransferase activity (ortholog); diolein transacylation activity (ortholog); INVOLVED IN diacylglycerol biosynthetic process (ortholog); intracellular triglyceride homeostasis (ortholog); lipid catabolic process (ortholog); ASSOCIATED WITH Chanarin-Dorfman syndrome (ortholog); congestive heart failure (ortholog); endomyocardial fibrosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lipid droplet (ortholog) NW_004955476 11304660 11309755 - 102009048 AGCD01055448;AGCD01055449;GBCB01003982;GBDI01017656;XM_005401809 XP_005401866 MODEL 9064475 protein-coding Slc26a8 solute carrier family 26 member 8 ENCODES a protein that exhibits chloride channel activity (ortholog); oxalate transmembrane transporter activity (ortholog); sulfate transmembrane transporter activity (ortholog); INVOLVED IN chloride transport (ortholog); oxalate transport (ortholog); sulfate transmembrane transport (ortholog); ASSOCIATED WITH schizophrenia (ortholog); spermatogenic failure 3 (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog); sperm annulus (ortholog) NW_004955437 3741284 3811819 - 102013542 AGCD01034334;AGCD01034335;AGCD01034336;AGCD01034337;AGCD01034338;AGCD01034339;AGCD01034340;AGCD01034341;AGCD01034342;AGCD01034343;AGCD01034344;AGCD01034345;AGCD01034346;AGCD01034347;AGCD01034348;AGCD01034349;AGCD01034350;GBDF01003340;GBDK01200079;XM_013516889 XP_013372343 MODEL 10099429 ncrna LOC106146273 uncharacterized LOC106146273 NW_004955475 3372393 3406497 + 106146273 AGCD01054839;AGCD01054840;AGCD01054841;GBCE01039254;XR_001230767 MODEL 8703468 protein-coding Ercc6 ERCC excision repair 6, chromatin remodeling factor ENCODES a protein that exhibits ATP binding (ortholog); ATP hydrolysis activity (ortholog); ATP-dependent activity, acting on DNA (ortholog); INVOLVED IN base-excision repair (ortholog); DNA damage checkpoint signaling (ortholog); DNA damage response (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH age related macular degeneration 5 (ortholog); Agenesis of Corpus Callosum (ortholog); arthrogryposis multiplex congenita (ortholog); FOUND IN B-WICH complex (ortholog); chromosome (ortholog); nuclear body (ortholog) NW_004955556 745175 812215 + 102029672 AGCD01073179;GBCE01126926;XM_005412569 XP_005412626 MODEL 616940644 snorna SNORD125 small nucleolar RNA, C/D box 125 8712207 pseudo LOC102020548 putative monooxygenase p33MONOX pseudogene NW_004955466 8052265 8053164 + 102020548 AGCD01050977 MODEL 8723782 protein-coding Klhl5 kelch like family member 5 ASSOCIATED WITH cocaine dependence (ortholog); Cocaine-Related Disorders (ortholog); FOUND IN microtubule cytoskeleton (ortholog) NW_004955443 8173338 8220393 - 102029015 AGCD01038315;AGCD01038316;GBDK01185239;XM_005391987 XP_005392044 MODEL 10132721 pseudo LOC106148054 ADP-ribosylation factor-like protein 2-binding protein pseudogene NW_004955415 2827304 2827944 - 106148054 AGCD01015916 MODEL 8937693 protein-coding P2ry6 pyrimidinergic receptor P2Y6 ENCODES a protein that exhibits G protein-coupled ADP receptor activity (ortholog); G protein-coupled UDP receptor activity (ortholog); G protein-coupled UTP receptor activity (ortholog); INVOLVED IN cellular response to prostaglandin E stimulus (ortholog); cellular response to purine-containing compound (ortholog); cellular response to pyrimidine ribonucleotide (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955414 18177406 18215428 - 102017221 AGCD01015272;GBDK01398355;XM_013511817 XP_013367271 MODEL 9051696 pseudo LOC102029343 splicing factor 45-like NW_004955449 15980418 15982369 - 102029343 AGCD01042204 MODEL 10294696 protein-coding LOC106146678 basic proline-rich protein-like NW_004955491 4133690 4134600 - 106146678 AGCD01060418;GBCE01141705;XM_013504605 XP_013360059 MODEL 8978363 protein-coding Sbds SBDS ribosome maturation factor ENCODES a protein that exhibits microtubule binding (ortholog); ribosome binding (ortholog); rRNA binding (ortholog); INVOLVED IN bone marrow development (ortholog); bone mineralization (ortholog); cytosolic ribosome assembly (ortholog); ASSOCIATED WITH Anodontia of Permanent Dentition (ortholog); aplastic anemia (ortholog); Dwarfism (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955456 8773917 8782427 - 102010127 AGCD01046502;GBDF01186593;XM_005396725;XM_013520572 XP_005396782;XP_013376026 MODEL 8798755 protein-coding LOC102018018 calcium-binding mitochondrial carrier protein SCaMC-1-like NW_004955435 11949742 12009579 - 102018018 AGCD01033128;AGCD01033129;GBDF01155495;XM_005388828;XM_013516552;XM_013516554;XM_013516555 XP_005388885;XP_013372006;XP_013372008;XP_013372009 MODEL 8943526 pseudo LOC102028248 10 kDa heat shock protein, mitochondrial pseudogene NW_004955402 31739428 31740093 + 102028248 AGCD01000804 MODEL 9032813 protein-coding LOC102003410 DNA fragmentation factor subunit alpha-like NW_004955454 12312169 12320100 + 102003410 AGCD01045408;GBDF01264302;XM_005396061 XP_005396118 MODEL 8781246 ncrna LOC102009208 uncharacterized LOC102009208 NW_004955514 376958 384322 + 102009208 AGCD01067008;AGCD01067009;GBDF01062503;XR_264490 MODEL 8950825 protein-coding Bhlhe22 basic helix-loop-helix family member e22 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN anterior commissure morphogenesis (ortholog); central nervous system projection neuron axonogenesis (ortholog); cerebral cortex regionalization (ortholog); FOUND IN nucleus (ortholog) NW_004955444 14458307 14460441 - 102014620 AGCD01039122;GBDK01059279;XM_013518126 XP_013373580 MODEL 8939163 protein-coding LOC102026921 cytochrome P450 2B4-like NW_004955578 68123 83697 - 102026921 AGCD01075459;GBCB01098494;XM_005413999 XP_005414056 MODEL 10234093 ncrna LOC106146958 uncharacterized LOC106146958 NW_004955407 31658423 31710521 - 106146958 AGCD01007655;AGCD01007656;AGCD01007657;GBDF01162859;XR_001231631;XR_001231632;XR_001231633 MODEL 10200187 ncrna LOC106150069 uncharacterized LOC106150069 NW_004955463 6566436 6570948 + 106150069 AGCD01049684;GBCE01094774;XR_001236651 MODEL 10236550 ncrna LOC106146405 uncharacterized LOC106146405 NW_004955477 5777522 5802513 - 106146405 AGCD01055598;GBDK01353439;XR_001230829 MODEL 8856179 ncrna LOC102015334 uncharacterized LOC102015334 NW_004955511 6179748 6184490 - 102015334 AGCD01066598;GBDF01195944;XR_264437 MODEL 8995816 protein-coding Iffo1 intermediate filament family orphan 1 ENCODES a protein that exhibits cytoskeletal anchor activity (ortholog); INVOLVED IN DNA double-strand break attachment to nuclear envelope (ortholog); double-strand break repair via nonhomologous end joining (ortholog); protein localization to site of double-strand break (ortholog); FOUND IN nuclear inner membrane (ortholog); nuclear matrix (ortholog); nucleoplasm (ortholog) NW_004955413 4167461 4180043 - 102016146 AGCD01013601;GBDJ01313478;XM_005378772;XM_005378774;XM_005378775;XM_005378776;XM_005378777 XP_005378829;XP_005378831;XP_005378832;XP_005378833;XP_005378834 MODEL 8965540 protein-coding Pnpla3 patatin like domain 3, 1-acylglycerol-3-phosphate O-acyltransferase ENCODES a protein that exhibits 1-acylglycerol-3-phosphate O-acyltransferase activity (ortholog); A2-type glycerophospholipase activity (ortholog); diolein transacylation activity (ortholog); INVOLVED IN cellular response to 3,3',5-triiodo-L-thyronine (ortholog); cellular response to insulin stimulus (ortholog); glycerophospholipid metabolic process (ortholog); ASSOCIATED WITH alcohol-associated liver disease (ortholog); alcoholic liver cirrhosis (ortholog); coronary artery disease (ortholog); FOUND IN lipid droplet (ortholog); membrane (ortholog) NW_004955413 28879646 28896224 + 102019902 AGCD01014572;GBDK01116835;XM_005379450;XM_005379451 XP_005379507;XP_005379508 MODEL 9061267 ncrna LOC102030031 uncharacterized LOC102030031 NW_004955404 18078819 18090393 + 102030031 AGCD01003606;AGCD01003607;GBDF01113751;XR_259316 MODEL 9032843 protein-coding LOC102004463 olfactory receptor 8G1-like NW_004955412 25028370 25030457 + 102004463 AGCD01013133;XM_005378412;XM_013510986 XP_005378469;XP_013366440 MODEL 8910656 protein-coding Ndc80 NDC80 kinetochore complex component ENCODES a protein that exhibits cyclin binding (ortholog); identical protein binding (ortholog); kinetochore adaptor activity (ortholog); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); attachment of spindle microtubules to kinetochore (ortholog); centrosome duplication (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); hepatocellular carcinoma (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); kinetochore (ortholog) NW_004955402 7692009 7728876 - 102019220 AGCD01000181;AGCD01000182;GBDK01305956;XM_005372664 XP_005372721 MODEL 8776751 pseudo LOC102024097 transcription factor BTF3 homolog 4 pseudogene NW_004955460 13187620 13196978 + 102024097 AGCD01048674 MODEL 8987737 protein-coding Pigz phosphatidylinositol glycan anchor biosynthesis class Z (Gwada blood group) ENCODES a protein that exhibits dol-P-Man:Man(3)GlcN-acyl-PI alpha-1,2-mannosyltransferase activity (ortholog); mannosyltransferase activity (ortholog); INVOLVED IN GPI anchor biosynthetic process (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955420 12994892 13003170 - 102017458 AGCD01020910;GBDI01182697;GBDJ01228590;XM_013513393 XP_013368847 MODEL 9032804 ncrna LOC102003089 uncharacterized LOC102003089 NW_004955406 36472700 36585512 - 102003089 AGCD01006556;AGCD01006557;AGCD01006558;AGCD01006559;GBDF01249792;XR_001236830;XR_001236832;XR_001236833 MODEL 8719494 ncrna LOC102019568 uncharacterized LOC102019568 NW_004955455 1787821 1789349 + 102019568 AGCD01045585;GBDF01251154;XR_001236284;XR_001236285 MODEL 8700329 protein-coding LOC102007304 zinc finger protein 354B NW_004955408 1507667 1520239 - 102007304 AGCD01007961;AGCD01007962;GBCB01038326;GBCE01165511;XM_005376027;XM_013507968 XP_005376084;XP_013363422 MODEL 8802055 protein-coding Lancl3 LanC like family member 3 NW_004955587 556105 658735 + 102011159 AGCD01076067;AGCD01076068;AGCD01076069;GBDJ01162414;XM_005414448 XP_005414505 MODEL 8967123 protein-coding Spart spartin ENCODES a protein that exhibits lipid binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN adipose tissue development (ortholog); cell division (ortholog); lipid droplet organization (ortholog); ASSOCIATED WITH cerebellar ataxia (ortholog); esophagus adenocarcinoma (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lipid droplet (ortholog) NW_004955431 9758159 9786468 + 102029649 AGCD01030193;AGCD01030194;GBDF01133087;XM_005387685;XM_005387686 XP_005387742;XP_005387743 MODEL 8752635 ncrna LOC102023798 uncharacterized LOC102023798 NW_004955414 29735573 29763795 - 102023798 AGCD01015714;AGCD01015715;GBDK01325459;XR_001233139;XR_260213;XR_260214 MODEL 8953204 protein-coding Spta1 spectrin alpha, erythrocytic 1 INVOLVED IN actin cytoskeleton organization (ortholog); hemopoiesis (ortholog); lymphocyte homeostasis (ortholog); ASSOCIATED WITH anemia (ortholog); congenital hemolytic anemia (ortholog); Elliptocytosis 2 (ortholog); FOUND IN axon (ortholog); cortical cytoskeleton (ortholog); cuticular plate (ortholog) NW_004955468 10472601 10545402 - 102027631 AGCD01052084;AGCD01052085;AGCD01052086;GBBH01036924;XM_013522277 XP_013377731 MODEL 9045929 protein-coding Tent5a terminal nucleotidyltransferase 5A ENCODES a protein that exhibits poly(A) RNA polymerase activity (ortholog); INVOLVED IN positive regulation of bone mineralization (ortholog); positive regulation of osteoblast differentiation (ortholog); regulation of ossification (ortholog); ASSOCIATED WITH esophageal atresia (ortholog); lung non-small cell carcinoma (ortholog); major depressive disorder (ortholog); FOUND IN cytoplasm (ortholog) NW_004955411 9695149 9701463 - 102009261 AGCD01011764;GBCE01137051;GBDI01218110;XM_005377679 XP_005377736 MODEL 8761432 protein-coding Shcbp1 SHC binding and spindle associated 1 ENCODES a protein that exhibits SH2 domain binding (ortholog); INVOLVED IN fibroblast growth factor receptor signaling pathway (ortholog); regulation of neural precursor cell proliferation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); synovial sarcoma (ortholog); FOUND IN midbody (ortholog); mitotic spindle (ortholog) NW_004955448 74969 141627 - 102013229 AGCD01041217;AGCD01041218;AGCD01041219;AGCD01041220;AGCD01041221;AGCD01041222;GBDF01086273;XM_005392972;XM_005392973;XM_013518688 XP_005393029;XP_005393030;XP_013374142 MODEL 8907336 protein-coding Wwp2 WW domain containing E3 ubiquitin protein ligase 2 ENCODES a protein that exhibits potassium channel inhibitor activity (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); transcription regulator inhibitor activity (ortholog); INVOLVED IN extracellular transport (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of potassium ion export across plasma membrane (ortholog); ASSOCIATED WITH Knee Osteoarthritis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955484 6853820 6967261 - 102021879 AGCD01058297;AGCD01058298;AGCD01058299;AGCD01058300;GBCB01059211;XM_013503940;XM_013503941 XP_013359394;XP_013359395 MODEL 39133546 snrna U4 U4 spliceosomal RNA 9035318 ncrna LOC102011962 uncharacterized LOC102011962 NW_004955410 25402864 25406681 - 102011962 AGCD01011152;GBDF01041224;XR_259864 MODEL 8924221 pseudo LOC102025155 prefoldin subunit 4-like NW_004955516 1138625 1139234 - 102025155 AGCD01067413 MODEL 10339718 protein-coding LOC106146535 histone H4 NW_004955483 928699 929143 - 106146535 AGCD01057637;XM_013503800 XP_013359254 MODEL 8823021 pseudo LOC102025515 peptidyl-prolyl cis-trans isomerase FKBP8 pseudogene NW_004955546 1298364 1300657 - 102025515 AGCD01072047 MODEL 8827418 ncrna LOC102021362 uncharacterized LOC102021362 NW_004955423 24524994 24528461 + 102021362 AGCD01024036;GBCB01042350;XR_260993 MODEL 10279576 protein-coding LOC106149246 translation initiation factor IF-2-like NW_004955441 15070741 15075333 - 106149246 AGCD01037241;AGCD01037242;GBDK01374228;XM_013517521 XP_013372975 MODEL 9016569 protein-coding Pgbd1 piggyBac transposable element derived 1 ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN neurogenesis (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN nucleus (ortholog) NW_004955465 13641462 13656466 + 102012077 AGCD01050614;AGCD01050615;GBCE01032028;XM_005398967;XM_005398968;XM_013521783 XP_005399024;XP_005399025;XP_013377237 MODEL 8904349 protein-coding Tent5b terminal nucleotidyltransferase 5B ENCODES a protein that exhibits poly(A) RNA polymerase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of cell cycle (ortholog); negative regulation of cell population proliferation (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955452 6345152 6353479 - 102028154 AGCD01044106;GBCE01016396;XM_005394894 XP_005394951 MODEL 8886086 pseudo LOC102029345 vesicle-associated membrane protein 4 pseudogene NW_004955402 34744011 34745805 - 102029345 AGCD01000868 MODEL 8962972 protein-coding P2ry8 P2Y receptor family member 8 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN Rho-activating G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); multiple myeloma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955499 1062233 1064588 - 102024704 AGCD01063311;GBDJ01195572;XM_005406556 XP_005406613 MODEL 10084591 protein-coding LOC106148055 protocadherin gamma-B7-like NW_004955415 12348047 12352541 - 106148055 AGCD01016187;AGCD01016188;GBDK01019998;XM_013512114 XP_013367568 MODEL 8998456 ncrna LOC102027608 uncharacterized LOC102027608 NW_004955406 18386009 18407844 - 102027608 AGCD01006033;AGCD01006034;GBCQ01191133;XR_259497 MODEL 10106574 ncrna LOC106146275 uncharacterized LOC106146275 NW_004955402 63391948 63400212 - 106146275 AGCD01001670;GBDF01125426;XR_001233061 MODEL 9004574 pseudo LOC102009990 retinol dehydrogenase 11 pseudogene NW_004955438 7901724 7902409 - 102009990 AGCD01035148 MODEL 8847332 protein-coding Slc26a9 solute carrier family 26 member 9 ENCODES a protein that exhibits ATPase binding (ortholog); bicarbonate transmembrane transporter activity (ortholog); chloride channel activity (ortholog); INVOLVED IN bicarbonate transport (ortholog); chloride transmembrane transport (ortholog); chloride transport (ortholog); ASSOCIATED WITH Burkholderia Infections (ortholog); cystic fibrosis-related diabetes (ortholog); gastrointestinal system disease (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); endomembrane system (ortholog) NW_004955406 41559424 41587748 - 102014741 AGCD01006686;AGCD01006687;GBDK01358978;XM_013523019;XM_013523023;XM_013523029 XP_013378473;XP_013378477;XP_013378483 MODEL 8751758 pseudo LOC102012361 iron-sulfur cluster assembly 1 homolog, mitochondrial pseudogene NW_004955437 12049308 12050497 - 102012361 AGCD01034594 MODEL 8710322 pseudo LOC102003411 nuclease-sensitive element-binding protein 1 pseudogene NW_004955454 11898396 11903297 + 102003411 AGCD01045401;AGCD01045402;XR_262803 MODEL 39132269 snorna SNORD127 small nucleolar RNA, C/D box 127 8993255 pseudo LOC102006218 attractin pseudogene NW_004955458 8263305 8377868 - 102006218 AGCD01047602;AGCD01047603;AGCD01047604 MODEL 10088048 pseudo LOC106146407 fibroblast growth factor 2 pseudogene NW_004955406 13616136 13631928 + 106146407 AGCD01005946;AGCD01005947;AGCD01005948 MODEL 8923163 ncrna LOC102026922 uncharacterized LOC102026922 NW_004955402 2857400 2860580 - 102026922 AGCD01000092;GBDF01146509;XR_001234675;XR_259018 MODEL 10248280 ncrna LOC106150070 uncharacterized LOC106150070 NW_004955402 15617190 15625928 - 106150070 AGCD01000460;GBCQ01183809;XR_001236654 MODEL 8799638 trna trnM(cat) tRNA-Met MT 3818 3886 + 15822219 8731549 pseudo LOC102015335 olfactory receptor 10AG1-like NW_004955511 5013534 5016613 - 102015335 AGCD01066542 MODEL 9017004 protein-coding Klhl6 kelch like family member 6 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); germinal center formation (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Monoclonal B-Cell Lymphocytosis (ortholog); multiple sclerosis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955420 23813482 23877886 + 102003770 AGCD01021261;AGCD01021262;AGCD01021263;GBCE01184064;XM_005383364 XP_005383421 MODEL 8958627 protein-coding Iffo2 intermediate filament family orphan 2 NW_004955527 294950 332716 + 102017494 AGCD01069380;AGCD01069381;GBCE01013302;XM_005409798;XM_005409799 XP_005409855;XP_005409856 MODEL 8817270 protein-coding LOC102008841 calcyclin-binding protein-like NW_004955414 6441386 6442088 - 102008841 AGCD01014919;XM_013512070 XP_013367524 MODEL 9048251 pseudo LOC102026570 PHD finger protein 6-like NW_004955543 2781373 2783381 - 102026570 AGCD01071662 MODEL 10378144 protein-coding LOC106146679 GTPase IMAP family member 8-like NW_004955491 5031423 5035064 + 106146679 AGCD01060468;GBBH01066943;GBDJ01164509;XM_013504619 XP_013360073 MODEL 8814179 protein-coding LOC102005867 protein S100-A8 ASSOCIATED WITH Acute Otitis Media NW_004955592 72594 73659 + 102005867 AGCD01076300;GBBH01004217;XM_005414602;XM_013509975 XP_005414659;XP_013365429 MODEL 8722007 pseudo LOC102019572 26S protease regulatory subunit 10B-like NW_004955409 2430344 2431601 - 102019572 AGCD01009199 MODEL 8767068 protein-coding Pih1d1 PIH1 domain containing 1 ENCODES a protein that exhibits ATPase binding (ortholog); histone binding (ortholog); histone reader activity (ortholog); INVOLVED IN box C/D snoRNP assembly (ortholog); chromatin remodeling (ortholog); epithelial cell differentiation (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955559 1390823 1395550 + 102015464 AGCD01073642;GBDI01019068;XM_005412877;XM_005412878;XM_005412879;XM_005412881;XM_013509019 XP_005412934;XP_005412935;XP_005412936;XP_005412938;XP_013364473 MODEL 8815472 protein-coding Sbf1 SET binding factor 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); phosphatase activity (ortholog); protein-membrane adaptor activity (ortholog); INVOLVED IN spermatid development (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog) NW_004955413 33427283 33450581 - 102028950 AGCD01014669;GBCE01096125;GBDF01046406;XM_013511400;XM_013511401;XM_013511402 XP_013366854;XP_013366855;XP_013366856 MODEL 8876460 protein-coding LOC102009212 uncharacterized LOC102009212 NW_004955436 1320800 1334990 - 102009212 AGCD01033575;GBDK01015463;XM_013516600;XR_001234945;XR_001234946;XR_001234947;XR_001234948;XR_001234949;XR_261735;XR_261738 XP_013372054 MODEL 8883029 protein-coding Ercc6l ERCC excision repair 6 like, spindle assembly checkpoint helicase ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); DNA translocase activity (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); lung adenocarcinoma (ortholog); lung squamous cell carcinoma (ortholog); FOUND IN chromosome (ortholog) NW_004955475 11596405 11629186 - 102012755 AGCD01055158;AGCD01055159;AGCD01055160;AGCD01055161;AGCD01055162;GBDI01367112;XM_005401684 XP_005401741 MODEL 8889434 pseudo LOC102029346 high mobility group protein B1 pseudogene NW_004955601 427880 430110 - 102029346 AGCD01076756 MODEL 8760748 protein-coding LOC102020553 T-cell surface glycoprotein YE1/48-like NW_004955413 7208798 7216466 + 102020553 AGCD01013804;GBDF01197316;XM_005379618 XP_005379675 MODEL 8846177 protein-coding Tmod3 tropomodulin 3 NW_004955409 2732042 2783966 - 102020427 AGCD01009217;AGCD01009218;AGCD01009219;GBCE01095255;XM_005376634 XP_005376691 MODEL 10201629 pseudo LOC106146277 taste receptor type 2 member 41-like NW_004955637 21132 23187 - 106146277 AGCD01077640 MODEL 9036605 protein-coding Sptan1 spectrin alpha, non-erythrocytic 1 ENCODES a protein that exhibits protein-containing complex binding (ortholog); spectrin binding (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant distal hereditary motor neuronopathy 11 (ortholog); benign epilepsy with centrotemporal spikes (ortholog); FOUND IN cortical cytoskeleton (ortholog); cuticular plate (ortholog); fascia adherens (ortholog) NW_004955570 1016510 1076499 + 102003498 AGCD01074782;AGCD01074783;AGCD01074784;AGCD01074785;GBCB01041320;GBCQ01011066;XM_005413564;XM_005413568;XM_005413569;XM_005413572;XM_005413573;XM_013509402;XM_013509403;XM_013509404 XP_005413621;XP_005413625;XP_005413626;XP_005413629;XP_005413630;XP_013364856;XP_013364857;XP_013364858 MODEL 8896138 ncrna LOC102030036 uncharacterized LOC102030036 NW_004955453 14487599 14514540 - 102030036 AGCD01044866;AGCD01044867;GBDF01053159;XR_262736 MODEL 8897578 protein-coding Slc27a1 solute carrier family 27 member 1 ENCODES a protein that exhibits biotin transmembrane transporter activity (ortholog); efflux transmembrane transporter activity (ortholog); fatty acid transmembrane transporter activity (ortholog); INVOLVED IN adiponectin-activated signaling pathway (ortholog); biotin import across plasma membrane (ortholog); biotin transport (ortholog); ASSOCIATED WITH familial hyperlipidemia (ortholog); glucose intolerance (ortholog); hyperinsulinism (ortholog); FOUND IN basal plasma membrane (ortholog); caveola (ortholog); cytoplasm (ortholog) NW_004955524 803793 821920 - 102025835 AGCD01068709;AGCD01068710;AGCD01068711;AGCD01068712;AGCD01068713;GBCB01007460;GBCB01007461;XM_013507238 XP_013362692 MODEL 8933676 protein-coding Pnpla4 patatin like domain 4, phospholipase and triacylglycerol lipase ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); acylglycerol O-acyltransferase activity (ortholog); diolein transacylation activity (ortholog); PARTICIPATES IN retinol metabolic pathway; vitamin A deficiency pathway; FOUND IN mitochondrion (ortholog) NW_004955499 5875706 5925809 - 102018307 AGCD01063532;AGCD01063533;GBCQ01151838;XM_005406541;XM_013505580;XM_013505581 XP_005406598;XP_013361034;XP_013361035 MODEL 8707990 ncrna LOC102018022 uncharacterized LOC102018022 NW_004955533 900860 904030 - 102018022 AGCD01070334;GBDF01261009;XR_264740 MODEL 9014487 ncrna LOC102024098 uncharacterized LOC102024098 NW_004955462 4008169 4011134 - 102024098 AGCD01049214;XR_263093 MODEL 9011573 ncrna LOC102003096 uncharacterized LOC102003096 NW_004955458 14817424 14818448 + 102003096 AGCD01047848;GBDF01118725;XR_262998 MODEL 8728817 pseudo LOC102007307 40S ribosomal protein S25-like NW_004955408 19623818 19624387 - 102007307 AGCD01008529 MODEL 8960145 protein-coding Pgbd2 piggyBac transposable element derived 2 NW_004955418 29951478 29985800 + 102019699 AGCD01019492;AGCD01019493;AGCD01019494;AGCD01019495;AGCD01019496;GBDF01256923;XM_005382331;XM_005382332;XM_013513077 XP_005382388;XP_005382389;XP_013368531 MODEL 8830914 protein-coding LOC102023799 olfactory receptor 51F1-like NW_004955414 20361879 20362832 - 102023799 AGCD01015369;XM_013511768 XP_013367222 MODEL 8964661 pseudo LOC102005870 RING finger and transmembrane domain-containing protein 1 pseudogene NW_004955602 483146 483899 - 102005870 AGCD01076788 MODEL 39131798 snorna SNORD12B small nucleolar RNA, C/D box 12B 8946980 ncrna LOC102011963 uncharacterized LOC102011963 NW_004955410 30060160 30071952 - 102011963 AGCD01011301;GBDF01192837;XR_259886 MODEL 8893980 protein-coding Wwtr1 WW domain containing transcription regulator 1 ENCODES a protein that exhibits protein homodimerization activity (ortholog); transcription coactivator activity (ortholog); transcription coregulator activity (ortholog); INVOLVED IN cilium assembly (ortholog); glomerulus development (ortholog); heart process (ortholog); ASSOCIATED WITH alveolar rhabdomyosarcoma (ortholog); muscular atrophy (ortholog); nephronophthisis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955448 745419 868313 - 102020732 AGCD01041237;AGCD01041238;GBCB01003406;GBDJ01135085;XM_005393000 XP_005393057 MODEL 8729758 pseudo LOC102018393 U3 small nucleolar RNA-associated protein 15 homolog NW_004955416 25347769 25351583 - 102018393 AGCD01017587 MODEL 8916424 protein-coding Shcbp1l SHC binding and spindle associated 1 like INVOLVED IN positive regulation of chromosome organization (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN meiotic spindle (ortholog) NW_004955406 21754461 21785156 - 102024425 AGCD01006142;AGCD01006143;GBDF01008400;XM_013521488 XP_013376942 MODEL 8819982 pseudo LOC102026923 40S ribosomal protein SA pseudogene NW_004955448 16211340 16216352 + 102026923 AGCD01041686 MODEL 10353909 ncrna LOC106149247 uncharacterized LOC106149247 NW_004955441 16088699 16098389 - 106149247 AGCD01037264;AGCD01037265;GBDF01103110;XR_001235295 MODEL 8792305 pseudo LOC102004464 ubiquitin-like-conjugating enzyme ATG3 pseudogene NW_004955466 12161005 12161997 - 102004464 AGCD01051113;XR_263318 MODEL 8835036 pseudo LOC102028249 40S ribosomal protein S8-like NW_004955591 62864 63720 + 102028249 AGCD01076240 MODEL 10157387 protein-coding LOC106148056 protocadherin gamma-B6-like NW_004955415 12367149 12370317 - 106148056 AGCD01016190;AGCD01016191;GBDJ01001742;GBDK01279687;XM_013512115 XP_013367569 MODEL 8805843 protein-coding LOC102015337 zinc finger protein 709-like NW_004955432 4507438 4533970 + 102015337 AGCD01030723;AGCD01030724;AGCD01030725;GBCE01123757;XM_013515927;XM_013515928 XP_013371381;XP_013371382 MODEL 8859097 protein-coding Slc27a2 solute carrier family 27 member 2 ENCODES a protein that exhibits enzyme binding (ortholog); fatty acid transmembrane transporter activity (ortholog); long-chain fatty acid transmembrane transporter activity (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); fatty acid alpha-oxidation (ortholog); fatty acid beta-oxidation (ortholog); PARTICIPATES IN phytanic acid degradation pathway; Refsum disease pathway; ASSOCIATED WITH colorectal cancer (ortholog); Fibrosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955409 4077685 4112828 - 102004901 AGCD01009272;AGCD01009273;GBBH01088680;GBCQ01011999;XM_005376675 XP_005376732 MODEL 8907448 ncrna LOC102027610 uncharacterized LOC102027610 NW_004955454 11736956 11770291 + 102027610 AGCD01045396;AGCD01045397;GBDF01158058;XR_001236263;XR_262784 MODEL 8716485 protein-coding Ifi16 interferon gamma inducible protein 16 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); identical protein binding (ortholog); transcription coregulator activity (ortholog); INVOLVED IN cellular response to glucose starvation (ortholog); cellular response to interferon-alpha (ortholog); cellular response to interferon-beta (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear inclusion body (ortholog) NW_004955468 10828726 10845853 + 102029846 AGCD01052105;GBDI01294199;XM_013522456;XM_013522457;XR_001236915 XP_013377910;XP_013377911 MODEL 10204482 ncrna LOC106146959 uncharacterized LOC106146959 NW_004955507 2315831 2319762 - 106146959 AGCD01065585;GBCQ01043766;XR_001231635 MODEL 8838317 protein-coding P3h1 prolyl 3-hydroxylase 1 ENCODES a protein that exhibits procollagen-proline 3-dioxygenase activity (ortholog); INVOLVED IN bone development (ortholog); collagen fibril organization (ortholog); negative regulation of cell growth (ortholog); ASSOCIATED WITH genetic disease (ortholog); osteogenesis imperfecta (ortholog); osteogenesis imperfecta type 3 (ortholog); FOUND IN basement membrane (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955537 2276080 2292303 - 102015445 AGCD01070921;GBBH01166524;XM_005410618 XP_005410675 MODEL 8852042 protein-coding Spast spastin ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); microtubule binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); axonal transport of mitochondrion (ortholog); cytokinetic process (ortholog); ASSOCIATED WITH cerebral palsy (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN axon (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955441 471609 521920 + 102021282 AGCD01036708;AGCD01036709;AGCD01036710;GBDF01089066;GBDI01079613;XM_013517607 XP_013373061 MODEL 8754996 pseudo LOC102018025 inositol polyphosphate multikinase pseudogene NW_004955537 2739915 2745001 - 102018025 AGCD01070938 MODEL 39133488 snrna U4 U4 spliceosomal RNA 9052351 ncrna LOC102025165 uncharacterized LOC102025165 NW_004955532 1964848 1970998 + 102025165 AGCD01070208;GBBH01020719;XR_001232022;XR_264720 MODEL 9016803 protein-coding LOC102019573 olfactory receptor 6C6-like NW_004955458 2670696 2671655 - 102019573 AGCD01047240;XM_005397499 XP_005397556 MODEL 8818666 pseudo LOC102012364 protein angel homolog 2-like NW_004955439 11699313 11700945 - 102012364 AGCD01035919 MODEL 8771331 ncrna LOC102003412 uncharacterized LOC102003412 NW_004955407 34652125 34732104 - 102003412 AGCD01007724;AGCD01007725;GBDF01014151;XR_001231192;XR_259607 MODEL 9065582 ncrna LOC102006219 uncharacterized LOC102006219 NW_004955409 9811332 9815400 - 102006219 AGCD01009449;GBDF01214479;XR_259763 MODEL 10276244 protein-coding LOC106146536 histone H4 NW_004955483 988244 988615 + 106146536 AGCD01057638;XM_013503801 XP_013359255 MODEL 10103891 ncrna LOC106146408 uncharacterized LOC106146408 NW_004955478 2634143 2643767 - 106146408 AGCD01055800;AGCD01055801;XR_001230833 MODEL 8795800 protein-coding Sbf2 SET binding factor 2 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); identical protein binding (ortholog); phosphatase binding (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); Charcot-Marie-Tooth disease type 4B2 (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); vacuolar membrane (ortholog) NW_004955414 25463962 25845368 - 102020439 AGCD01015607;AGCD01015608;AGCD01015609;AGCD01015610;AGCD01015611;AGCD01015612;AGCD01015613;AGCD01015614;AGCD01015615;AGCD01015616;AGCD01015617;AGCD01015618;AGCD01015619;AGCD01015620;AGCD01015621;AGCD01015622;AGCD01015623;AGCD01015624;AGCD01015625;GBDF01128046;XM_013511938 XP_013367392 MODEL 9063535 protein-coding LOC102029347 contactin-associated protein-like 3 NW_004955606 1514 56471 + 102029347 AGCD01076950;AGCD01076951;AGCD01076952;AGCD01076953;AGCD01076954;AGCD01076955;AGCD01076956;GBDF01059593;GBDI01208438;XM_013510107 XP_013365561 MODEL 8931922 protein-coding Ercc6l2 ERCC excision repair 6 like 2 ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); DNA damage response (ortholog); double-strand break repair via classical nonhomologous end joining (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); bone marrow disease (ortholog); Bone Marrow Failure Syndrome 2 (ortholog); FOUND IN centrosome (ortholog); chromosome, centromeric region (ortholog); cytoplasm (ortholog) NW_004955422 22753008 22890339 + 102007243 AGCD01023165;AGCD01023166;AGCD01023167;AGCD01023168;AGCD01023169;AGCD01023170;AGCD01023171;AGCD01023172;GBDJ01044876;XM_005384686;XM_013514250;XM_013514251;XM_013514252 XP_005384743;XP_013369704;XP_013369705;XP_013369706 MODEL 8833505 protein-coding LOC102030039 keratin-associated protein 27-1 NW_004955407 29687200 29687805 - 102030039 AGCD01007613;XM_005375627 XP_005375684 MODEL 8762462 protein-coding Nde1 nudE neurodevelopment protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); microtubule binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN centrosome duplication (ortholog); cerebral cortex development (ortholog); chromosome localization (ortholog); ASSOCIATED WITH Familial Thoracic Aortic Aneurysm 4 (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN centrosome (ortholog); cytoplasmic vesicle membrane (ortholog); kinetochore (ortholog) NW_004955442 495704 530296 + 102025728 AGCD01037426;GBBH01077769;XM_005391075;XM_005391076;XM_005391077;XM_005391078;XM_013517843;XM_013517844 XP_005391132;XP_005391133;XP_005391134;XP_005391135;XP_013373297;XP_013373298 MODEL 10372380 protein-coding LOC106146278 mastin-like NW_004955442 15934023 15936751 + 106146278 AGCD01037888;GBDF01127499;XM_013517962 XP_013373416 MODEL 8797586 protein-coding Lap3 leucine aminopeptidase 3 ENCODES a protein that exhibits aminopeptidase activity (ortholog); carboxypeptidase activity (ortholog); peptidase activity (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); trans-Golgi network (ortholog) NW_004955480 6565071 6588682 - 102008625 AGCD01056686;GBDF01080531;XM_005402497 XP_005402554 MODEL 9044062 protein-coding Bhlhe23 basic helix-loop-helix family member e23 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN negative regulation of retinal cell programmed cell death (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); post-embryonic eye morphogenesis (ortholog); ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog) NW_004955528 1094234 1094674 + 102019428 AGCD01069552;GBBH01169029;XM_005409997 XP_005410054 MODEL 8960529 protein-coding Tent5c terminal nucleotidyltransferase 5C ENCODES a protein that exhibits poly(A) RNA polymerase activity (ortholog); INVOLVED IN in utero embryonic development (ortholog); mRNA stabilization (ortholog); negative regulation of cell differentiation (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955435 20790410 20811730 + 102008884 AGCD01033465;AGCD01033466;GBDF01236475;XM_005389058;XM_005389059 XP_005389115;XP_005389116 MODEL 8822235 protein-coding LOC102026574 olfactory receptor 6S1 NW_004955550 1434291 1438383 - 102026574 AGCD01072566;GBDF01184932;XM_005412143 XP_005412200 MODEL 8983855 protein-coding LOC102008843 olfactory receptor 52N4-like NW_004955414 21721245 21722210 + 102008843 AGCD01015429;XM_005380501 XP_005380558 MODEL 8867395 protein-coding Pnpla5 patatin like domain 5, triacylglycerol lipase ENCODES a protein that exhibits triacylglycerol lipase activity (ortholog) NW_004955413 28825673 28835476 - 102019159 AGCD01014568;GBDJ01219176;XM_005379447;XM_005379449 XP_005379504;XP_005379506 MODEL 8764659 ncrna LOC102024099 uncharacterized LOC102024099 NW_004955463 6815241 6819726 - 102024099 AGCD01049706;GBDJ01170656;XR_001236633 MODEL 8990815 ncrna LOC102009994 uncharacterized LOC102009994 NW_004955551 302834 319846 + 102009994 AGCD01072654;GBDF01089175;XR_264922 MODEL 8751583 ncrna LOC102003099 uncharacterized LOC102003099 NW_004955462 10959270 10994353 - 102003099 AGCD01049379;AGCD01049380;GBDF01082820;XR_001236594;XR_263124;XR_263125;XR_263126 MODEL 8712631 ncrna LOC102009219 uncharacterized LOC102009219 NW_004955438 11481547 11499549 - 102009219 AGCD01035239;AGCD01035240;GBDF01306429;XR_261927 MODEL 8969088 protein-coding Pih1d2 PIH1 domain containing 2 ENCODES a protein that exhibits small GTPase binding (ortholog); FOUND IN protein folding chaperone complex (ortholog) NW_004955412 13748120 13755498 - 102025891 AGCD01012844;AGCD01012845;GBCE01169691;XM_005378104;XM_013511039 XP_005378161;XP_013366493 MODEL 9056857 protein-coding LOC102025518 kallikrein-4-like NW_004955558 1552376 1556197 + 102025518 AGCD01073447;AGCD01073448;GBDF01243961;XM_013508854 XP_013364308 MODEL 9027487 protein-coding LOC102020557 L-lactate dehydrogenase C chain ENCODES a protein that exhibits L-lactate dehydrogenase (NAD+) activity (ortholog); INVOLVED IN ATP biosynthetic process (ortholog); flagellated sperm motility (ortholog); lactate metabolic process (ortholog); ASSOCIATED WITH lung disease (ortholog); male infertility (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955414 33109535 33138756 + 102020557 AGCD01015798;AGCD01015799;GBDF01007080;XM_005380415;XM_005380416;XM_013511839 XP_005380472;XP_005380473;XP_013367293 MODEL 10372038 ncrna LOC106150071 uncharacterized LOC106150071 NW_004955463 7134697 7135321 - 106150071 AGCD01049719;GBBH01172741;XR_001236653 MODEL 8803453 protein-coding LOC102005873 PRAME family member 12-like NW_004955615 256153 258758 + 102005873 AGCD01077252;XM_005414985 XP_005415042 MODEL 8976659 trna trnN(gtt) tRNA-Asn MT 5085 5157 - 15822222 8854057 protein-coding Sptb spectrin beta, erythrocytic ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); ankyrin binding (ortholog); INVOLVED IN hemopoiesis (ortholog); modification of postsynaptic actin cytoskeleton (ortholog); plasma membrane organization (ortholog); ASSOCIATED WITH anemia (ortholog); Chudley-Mccullough syndrome (ortholog); congenital hemolytic anemia (ortholog); FOUND IN cell surface (ortholog); cortical cytoskeleton (ortholog); glutamatergic synapse (ortholog) NW_004955466 5013963 5170186 + 102026411 AGCD01050865;AGCD01050866;AGCD01050867;AGCD01050868;GBDF01303785;XM_005399117;XM_013521954;XM_013521955;XM_013521956 XP_005399174;XP_013377408;XP_013377409;XP_013377410 MODEL 10395214 ncrna LOC106149248 uncharacterized LOC106149248 NW_004955441 10398589 10399687 + 106149248 AGCD01037084;XR_001235296 MODEL 8729357 ncrna LOC102004468 uncharacterized LOC102004468 NW_004955413 29719091 29721582 + 102004468 AGCD01014592;GBDF01189455;XR_001233035;XR_001233036 MODEL 8860106 protein-coding Shd Src homology 2 domain containing transforming protein D NW_004955495 4579252 4587192 - 102010816 AGCD01061934;AGCD01061935;GBBH01135216;XM_005405804 XP_005405861 MODEL 10315360 pseudo LOC106148057 protocadherin gamma-B3-like NW_004955415 12401217 12406034 - 106148057 AGCD01016193 MODEL 8742057 protein-coding LOC102007312 estradiol 17 beta-dehydrogenase 5-like NW_004955463 77186 79987 - 102007312 AGCD01049471;GBDJ01183249;XM_005398329 XP_005398386 MODEL 8832297 protein-coding Ifi30 IFI30 lysosomal thiol reductase ENCODES a protein that exhibits oxidoreductase activity, acting on a sulfur group of donors (ortholog); oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor (ortholog); INVOLVED IN antigen processing and presentation of exogenous peptide antigen via MHC class I (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); negative regulation of fibroblast proliferation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); allergic contact dermatitis (ortholog); metabolic dysfunction-associated steatotic liver disease (ortholog); FOUND IN extracellular region (ortholog); lysosome (ortholog) NW_004955524 3229024 3230955 - 102010831 AGCD01068868;GBBH01004304;GBCB01022981;XM_013507264 XP_013362718 MODEL 8930453 protein-coding Pgbd4 piggyBac transposable element derived 4 NW_004955496 1861479 1869071 + 102003888 AGCD01062260;GBCQ01012331;XM_013505386;XM_013505387;XM_013505388;XM_013505389;XM_013505390;XM_013505391 XP_013360840;XP_013360841;XP_013360842;XP_013360843;XP_013360844;XP_013360845 MODEL 8823434 ncrna LOC102018027 uncharacterized LOC102018027 NW_004955437 7912514 7931491 - 102018027 AGCD01034474;AGCD01034475;GBDI01369509;XR_001235114;XR_001235115;XR_001235116 MODEL 150537104 snorna SNORD12C small nucleolar RNA, C/D box 12C 8913376 protein-coding Klhl7 kelch like family member 7 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); ASSOCIATED WITH Bohring Syndrome (ortholog); cold-induced sweating syndrome (ortholog); cold-induced sweating syndrome 1 (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955410 25406775 25477552 + 102012172 AGCD01011152;AGCD01011153;GBCE01137321;XM_005377390;XM_013510654 XP_005377447;XP_013366108 MODEL 10318572 ncrna LOC106146680 uncharacterized LOC106146680 NW_004955491 5642338 5645750 + 106146680 AGCD01060493;GBDF01155661;XR_001231220 MODEL 8936676 ncrna LOC102026924 uncharacterized LOC102026924 NW_004955583 1036368 1037303 - 102026924 AGCD01075878;GBDF01147718;XR_265109;XR_265110 MODEL 8861628 protein-coding Sbk1 SH3 domain binding kinase 1 ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN peptidyl-serine phosphorylation (ortholog); peptidyl-threonine phosphorylation (ortholog) NW_004955493 6383626 6394919 + 102016610 AGCD01061100;GBBH01021962;GBCB01041743;XM_013504891;XM_013504892;XM_013504893 XP_013360345;XP_013360346;XP_013360347 MODEL 10301449 ncrna LOC106146409 uncharacterized LOC106146409 NW_004955478 2637520 2638152 + 106146409 AGCD01055800;XR_001230834 MODEL 8888362 pseudo LOC102021363 olfactory receptor 7D4-like NW_004955495 413973 415050 + 102021363 AGCD01061628;XM_005406119 MODEL 9009426 protein-coding Ereg epiregulin ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); growth factor activity (ortholog); receptor ligand activity (ortholog); INVOLVED IN cell-cell signaling (ortholog); cytokine-mediated signaling pathway (ortholog); epidermal growth factor receptor signaling pathway (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH cholesteatoma (ortholog); erythropoietic protoporphyria (ortholog); Experimental Colitis (ortholog); FOUND IN extracellular region (ortholog) NW_004955474 612440 627606 + 102006571 AGCD01054224;GBCC01052167;XM_005401312 XP_005401369 MODEL 8865022 protein-coding LOC102015341 vomeronasal type-2 receptor 116-like NW_004955524 4084903 4216382 + 102015341 AGCD01068946;AGCD01068947;AGCD01068948;AGCD01068949;AGCD01068950;AGCD01068951;AGCD01068952;AGCD01068953;AGCD01068954;AGCD01068955;AGCD01068956;AGCD01068957;AGCD01068958;AGCD01068959;XM_013507204 XP_013362658 MODEL 8727530 protein-coding Laptm4a lysosomal protein transmembrane 4 alpha FOUND IN Golgi apparatus (ortholog); late endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955469 2604464 2626835 - 102012419 AGCD01052279;AGCD01052280;GBBH01004233;XM_005400342 XP_005400399 MODEL 8930218 protein-coding Slc27a3 solute carrier family 27 member 3 ENCODES a protein that exhibits fatty-acyl-CoA synthase activity (ortholog); long-chain fatty acid-CoA ligase activity (ortholog); very long-chain fatty acid-CoA ligase activity (ortholog); INVOLVED IN fatty acid transport (ortholog); long-chain fatty acid metabolic process (ortholog); FOUND IN mitochondrion (ortholog) NW_004955545 395938 400324 + 102021178 AGCD01071790;AGCD01071791;GBCQ01093343;GBDJ01125476;XM_013508224 XP_013363678 MODEL 8790229 pseudo LOC102026929 60 kDa heat shock protein, mitochondrial pseudogene NW_004955450 11144935 11148897 + 102026929 AGCD01042648 MODEL 8924757 protein-coding Tmod4 tropomodulin 4 ENCODES a protein that exhibits tropomyosin binding (ortholog); FOUND IN striated muscle thin filament (ortholog) NW_004955588 530288 535789 - 102026587 AGCD01076115;GBCB01010377;XM_005414500;XM_005414501;XM_013509908 XP_005414557;XP_005414558;XP_013365362 MODEL 9060229 protein-coding P3h2 prolyl 3-hydroxylase 2 ENCODES a protein that exhibits procollagen-proline 3-dioxygenase activity (ortholog); INVOLVED IN collagen metabolic process (ortholog); negative regulation of cell population proliferation (ortholog); peptidyl-proline hydroxylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); High Myopia with Cataract and Vitreoretinal Degeneration (ortholog); intestinal disease (ortholog); FOUND IN basement membrane (ortholog); endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955420 17964153 18118442 + 102016715 AGCD01021036;AGCD01021037;AGCD01021038;AGCD01021039;AGCD01021040;GBCE01039367;GBCQ01041857;XM_005383229 XP_005383286 MODEL 39133489 snrna U4 U4 spliceosomal RNA 8855067 pseudo LOC102003415 keratinocyte-associated protein 2-like NW_004955457 11849410 11853825 + 102003415 AGCD01046988 MODEL 10095766 protein-coding LOC106148058 protocadherin beta-15-like NW_004955415 12574196 12576657 - 106148058 AGCD01016201;GBDJ01233416;XM_013512116 XP_013367570 MODEL 9052001 protein-coding LOC102009995 CMRF35-like molecule 6 NW_004955553 1453306 1458327 + 102009995 AGCD01072882;GBDK01277584;XM_005412239 XP_005412296 MODEL 10101740 ncrna LOC106146537 uncharacterized LOC106146537 NW_004955483 6224758 6227625 - 106146537 AGCD01057774;GBCE01138484;XR_001231013 MODEL 8863730 protein-coding Xab2 XPA binding protein 2 INVOLVED IN blastocyst development (ortholog); cerebral cortex development (ortholog); DNA-templated transcription (ortholog); PARTICIPATES IN nucleotide excision repair pathway; spliceosome pathway; FOUND IN catalytic step 2 spliceosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955563 1630403 1638333 + 102030358 AGCD01074153;GBDF01051839;XM_005413180 XP_005413237 MODEL 9059030 pseudo LOC102029350 olfactory receptor 4K14-like NW_004955614 256839 257776 - 102029350 AGCD01077237 MODEL 8831055 protein-coding Ifi35 interferon induced protein 35 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN macrophage activation involved in immune response (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Human Influenza (ortholog); Spontaneous Abortions (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955451 16790998 16798993 + 102029254 AGCD01043707;GBBH01032363;XM_005394494 XP_005394551 MODEL 8860921 protein-coding Pik3ap1 phosphoinositide-3-kinase adaptor protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol 3-kinase regulatory subunit binding (ortholog); INVOLVED IN negative regulation of toll-like receptor signaling pathway (ortholog); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); positive regulation of toll-like receptor signaling pathway (ortholog); ASSOCIATED WITH myoclonic-atonic epilepsy (ortholog); West syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955507 2805782 2918664 - 102018116 AGCD01065594;AGCD01065595;AGCD01065596;GBBH01001766;XM_005407578;XM_005407579;XM_013506162;XM_013506163;XM_013506164 XP_005407635;XP_005407636;XP_013361616;XP_013361617;XP_013361618 MODEL 8834192 ncrna LOC102028250 uncharacterized LOC102028250 NW_004955402 48558467 48620862 - 102028250 AGCD01001204;AGCD01001205;AGCD01001206;GBCQ01124545;XR_001232936;XR_259101 MODEL 10361264 protein-coding LOC106146280 ubiquitin-conjugating enzyme E2 R2-like NW_004955455 6801688 6804662 + 106146280 AGCD01045813;XM_013520303 XP_013375757 MODEL 8838624 ncrna LOC102023806 uncharacterized LOC102023806 NW_004955481 1913676 1918044 + 102023806 AGCD01056856;GBDJ01400449;XR_263764;XR_263765 MODEL 8706654 protein-coding Ndel1 nudE neurodevelopment protein 1 like 1 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); canonical Wnt signaling pathway (ortholog); cell migration (ortholog); ASSOCIATED WITH schizophrenia (ortholog); systemic juvenile rheumatoid arthritis (ortholog); FOUND IN axon (ortholog); axon hillock (ortholog); cell body (ortholog) NW_004955467 8432806 8486563 - 102015823 AGCD01051450;AGCD01051451;GBCB01002091;XM_005399403;XM_005399405;XM_005399406;XM_005399407;XM_013522099 XP_005399460;XP_005399462;XP_005399463;XP_005399464;XP_013377553 MODEL 8777339 ncrna LOC102027611 uncharacterized LOC102027611 NW_004955407 38440962 38448720 + 102027611 AGCD01007807;GBDF01176910;XR_259623 MODEL 10261081 pseudo LOC106146960 microfibrillar-associated protein 1 pseudogene NW_004955407 42849087 42852603 + 106146960 AGCD01007897 MODEL 8758411 protein-coding Bhlhe40 basic helix-loop-helix family member e40 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); entrainment of circadian clock by photoperiod (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH advanced sleep phase syndrome (ortholog); bipolar disorder (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog); nucleus (ortholog) NW_004955421 8463337 8468877 - 102018503 AGCD01021814;GBBH01119101;XM_005383740 XP_005383797 MODEL 8711921 protein-coding LOC102008850 centromere protein Q-like NW_004955481 3368425 3369339 + 102008850 AGCD01056902;XM_013503357 XP_013358811 MODEL 8929831 ncrna LOC102004472 uncharacterized LOC102004472 NW_004955475 4433519 4450120 - 102004472 AGCD01054880;GBCE01047752;XR_263611 MODEL 8903751 protein-coding Spata1 spermatogenesis associated 1 FOUND IN acrosomal vesicle (ortholog); cytoplasmic vesicle (ortholog) NW_004955423 9336208 9384727 - 102030090 AGCD01023657;GBDF01083446;GBDJ01155884;XM_005385158 XP_005385215 MODEL 9008246 protein-coding LOC102024103 acrosomal protein SP-10-like NW_004955412 26731649 26733395 + 102024103 AGCD01013211;XM_005378471 XP_005378528 MODEL 8724761 pseudo LOC102011964 40S ribosomal protein S3a pseudogene NW_004955410 19855730 19856950 - 102011964 AGCD01011031 MODEL 9043837 ncrna LOC102012371 uncharacterized LOC102012371 NW_004955443 10531041 10537221 - 102012371 AGCD01038378;GBBH01158501;XR_001235449 MODEL 9044868 protein-coding Pnpla6 patatin like domain 6, lysophospholipase ENCODES a protein that exhibits B-type glycerophospholipase activity (ortholog); phosphatidylcholine lysophospholipase A1 activity (ortholog); INVOLVED IN angiogenesis (ortholog); animal organ morphogenesis (ortholog); ASSOCIATED WITH amenorrhea (ortholog); amyotrophic lateral sclerosis (ortholog); Boucher-Neuhauser syndrome (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955563 1681112 1703287 - 102030676 AGCD01074156;AGCD01074157;GBDJ01081263;XM_005413181;XM_005413182;XM_005413184;XM_005413185 XP_005413238;XP_005413239;XP_005413241;XP_005413242 MODEL 8824276 protein-coding LOC102019576 uncharacterized LOC102019576 NW_004955460 10273715 10276083 + 102019576 AGCD01048576;GBBH01064357;XM_013521115 XP_013376569 MODEL 8855738 protein-coding LOC102025166 HLA class II histocompatibility antigen, DO alpha chain ENCODES a protein that exhibits MHC class II protein complex binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); negative regulation of antigen processing and presentation of peptide antigen via MHC class II (ortholog); ASSOCIATED WITH Familial Prostate Cancer (ortholog); liver disease (ortholog); occupational asthma (ortholog); FOUND IN MHC class II protein complex (ortholog) NW_004955437 1603395 1606800 - 102025166 AGCD01034219;GBDI01009349;XM_005389464;XM_005389465;XM_013516976;XM_013516977 XP_005389521;XP_005389522;XP_013372430;XP_013372431 MODEL 8994308 ncrna LOC102018395 uncharacterized LOC102018395 NW_004955417 9450900 9469286 + 102018395 AGCD01018052;GBDF01211316;XR_001233466;XR_260468 MODEL 8846351 pseudo LOC102007318 ubiquitin-conjugating enzyme E2 L3 pseudogene NW_004955412 10793664 10794367 - 102007318 AGCD01012785;XM_005378041;XM_005378042 MODEL 8706873 protein-coding LOC102020558 olfactory receptor 52B4-like NW_004955414 20016773 20017717 + 102020558 AGCD01015350;XM_005380462 XP_005380519 MODEL 10218804 protein-coding LOC106150072 uncharacterized LOC106150072 NW_004955463 14164310 14216186 + 106150072 AGCD01049902;AGCD01049903;AGCD01049904;AGCD01049905;GBDK01372738;XM_013521568 XP_013377022 MODEL 9006612 protein-coding LOC102025520 BMP-binding endothelial regulator protein NW_004955560 1772486 1815898 - 102025520 AGCD01073772;AGCD01073773;XM_013509067 XP_013364521 MODEL 39132570 snorna SNORD14 Small nucleolar RNA SNORD14 8922304 protein-coding LOC102018034 uncharacterized LOC102018034 NW_004955555 1393477 1423035 + 102018034 AGCD01073077;AGCD01073078;AGCD01073079;AGCD01073080;GBDJ01124619;GBDK01349306;XM_013508755;XM_013508756;XM_013508757 XP_013364209;XP_013364210;XP_013364211 MODEL 8976349 pseudo LOC102020560 gamma-soluble NSF attachment protein pseudogene NW_004955475 903589 940616 + 102020560 AGCD01054718;AGCD01054719;AGCD01054720 MODEL 8790725 protein-coding Tent5d terminal nucleotidyltransferase 5D ENCODES a protein that exhibits poly(A) RNA polymerase activity (ortholog) NW_004955529 720659 784609 + 102017157 AGCD01069654;AGCD01069655;AGCD01069656;GBDJ01353542;XM_005410070;XM_013507537;XM_013507538 XP_005410127;XP_013362991;XP_013362992 MODEL 10307968 ncrna LOC106146681 uncharacterized LOC106146681 NW_004955491 5927592 5931958 + 106146681 AGCD01060508;GBDF01254194;XR_001231221 MODEL 8868835 protein-coding She Src homology 2 domain containing E NW_004955545 989390 1011100 - 102012248 AGCD01071830;AGCD01071831;GBDF01178649;GBDF01192726;XM_005411520 XP_005411577 MODEL 10083621 pseudo LOC106146410 protein SGT1 homolog NW_004955478 424150 425686 + 106146410 AGCD01055737 MODEL 8831303 pseudo LOC102009222 C-Myc-binding protein pseudogene NW_004955440 3127945 3130866 - 102009222 AGCD01036236 MODEL 8907591 pseudo LOC102006221 evolutionarily conserved signaling intermediate in Toll pathway, mitochondrial pseudogene NW_004955409 19008763 19009507 - 102006221 AGCD01009854 MODEL 9047211 pseudo LOC102003102 HAUS augmin-like complex subunit 8 NW_004955464 11500987 11501958 - 102003102 AGCD01050155 MODEL 8855765 ncrna LOC102026931 uncharacterized LOC102026931 NW_004955737 681 4827 - 102026931 AGCD01078237;GBDF01052068;XR_265184 MODEL 8860199 protein-coding Pgbd5 piggyBac transposable element derived 5 ENCODES a protein that exhibits transposase activity (ortholog); INVOLVED IN non-replicative DNA transposition (ortholog); ASSOCIATED WITH Neoplastic Cell Transformation (ortholog); neurodevelopmental disorder with seizures, hypotonia, and variable spasticity (ortholog); rhabdoid cancer (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955492 8032220 8090898 + 102013621 AGCD01060808;GBBH01204516;GBCB01089036;XM_005404993 XP_005405050 MODEL 8911052 trna trnP(tgg) tRNA-Pro MT 15374 15440 - 15822235 8946774 pseudo LOC102030042 solute carrier organic anion transporter family member 4C1 pseudogene NW_004955407 1843175 1844956 - 102030042 AGCD01006800 MODEL 10181309 pseudo LOC106146411 E3 ubiquitin-protein ligase ZFP91 pseudogene NW_004955478 9448217 9449812 - 106146411 AGCD01056071 MODEL 10390366 pseudo LOC106148059 transmembrane protein 68 pseudogene NW_004955415 24046677 24048422 + 106148059 AGCD01016564 MODEL 10164920 protein-coding LOC106149249 sperm-egg fusion protein Juno-like NW_004955441 18910203 18910901 - 106149249 AGCD01037327;XM_013517524 XP_013372978 MODEL 8818778 protein-coding Klhl8 kelch like family member 8 INVOLVED IN protein ubiquitination (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH catecholaminergic polymorphic ventricular tachycardia (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); nucleoplasm (ortholog) NW_004955474 2652992 2710616 + 102016915 AGCD01054302;GBDF01077573;XM_005401340;XM_005401341;XM_013502771 XP_005401397;XP_005401398;XP_013358225 MODEL 8930424 protein-coding LOC102029351 olfactory receptor 2M3-like NW_004955630 94656 95594 + 102029351 AGCD01077520;XM_005415037 XP_005415094 MODEL 10393526 ncrna LOC106150073 uncharacterized LOC106150073 NW_004955463 14152785 14159825 + 106150073 AGCD01049902;GBDK01225960;XR_001236655 MODEL 10361269 protein-coding LOC106146281 5'-nucleotidase domain-containing protein 1-like NW_004955526 679746 694955 - 106146281 AGCD01069246;AGCD01069247;GBCC01013361;XM_013507370 XP_013362824 MODEL 10319493 ncrna LOC106146961 uncharacterized LOC106146961 NW_004955507 4042176 4058788 + 106146961 AGCD01065640;GBDF01235397;XR_001231637 MODEL 9037736 ncrna LOC102015345 uncharacterized LOC102015345 NW_004955533 468505 485203 - 102015345 AGCD01070319;GBDF01051497;XR_001232031;XR_001232032 MODEL 8825029 protein-coding Slc27a4 solute carrier family 27 member 4 ENCODES a protein that exhibits long-chain fatty acid transmembrane transporter activity (ortholog); long-chain fatty acid-CoA ligase activity (ortholog); oleoyl-CoA ligase activity (ortholog); INVOLVED IN fatty acid metabolic process (ortholog); fatty acid transport (ortholog); glucose import in response to insulin stimulus (ortholog); ASSOCIATED WITH autosomal recessive congenital ichthyosis (ortholog); genetic disease (ortholog); Ichthyosis Prematurity Syndrome (ortholog); FOUND IN brush border membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955570 853856 866383 + 102024731 AGCD01074771;GBCQ01036852;GBDJ01090430;XM_005413538 XP_005413595 MODEL 8731555 protein-coding Laptm4b lysosomal protein transmembrane 4 beta ENCODES a protein that exhibits ceramide binding (ortholog); kinase binding (ortholog); phosphatidylinositol bisphosphate binding (ortholog); INVOLVED IN endosome organization (ortholog); endosome transport via multivesicular body sorting pathway (ortholog); negative regulation of lysosomal protein catabolic process (ortholog); FOUND IN early endosome (ortholog); endosome (ortholog); late endosome membrane (ortholog) NW_004955417 13574493 13625669 + 102015955 AGCD01018188;AGCD01018189;GBBH01003692;GBDF01010424;XM_013512773 XP_013368227 MODEL 8780653 protein-coding LOC102005876 mRNA cap guanine-N7 methyltransferase-like NW_004956031 668 8233 + 102005876 AGCD01078913;GBDK01394335;XM_013510216 XP_013365670 MODEL 8974312 protein-coding Spata13 spermatogenesis associated 13 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN cell migration (ortholog); filopodium assembly (ortholog); lamellipodium assembly (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); filopodium (ortholog) NW_004955497 4224374 4307335 - 102019928 AGCD01062569;AGCD01062570;AGCD01062571;AGCD01062572;GBBH01026662;GBDJ01239817;XM_013505480 XP_013360934 MODEL 9066457 protein-coding Bhlhe41 basic helix-loop-helix family member e41 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH esophageal cancer (ortholog); Familial Natural Short Sleep 1 (ortholog); lung adenocarcinoma (ortholog) NW_004955413 21100021 21103358 - 102004268 AGCD01014246;GBCB01005694;GBCQ01007548;XM_013511397 XP_013366851 MODEL 8876881 protein-coding Tmpo thymopoietin ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amyloidosis (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); cardiomyopathy (ortholog); FOUND IN chromatin (ortholog); nuclear envelope (ortholog); nuclear inner membrane (ortholog) NW_004955405 34526420 34556740 + 102029699 AGCD01005375;AGCD01005376;GBBH01064996;GBCC01002099;XM_013518574;XM_013518576;XM_013518578 XP_013374028;XP_013374030;XP_013374032 MODEL 8906378 pseudo LOC102009996 cytochrome P450 2B4-like NW_004955555 49910 64514 - 102009996 AGCD01073023 MODEL 10370786 ncrna LOC106146538 uncharacterized LOC106146538 NW_004955483 4478610 4487483 - 106146538 AGCD01057741;AGCD01057742;XR_001231014 MODEL 8940012 protein-coding LOC102003103 uncharacterized LOC102003103 NW_004955412 1132411 1136987 + 102003103 AGCD01012507;GBDF01116497;XM_005377954 XP_005378011 MODEL 9067224 protein-coding LOC102026575 G patch domain and KOW motifs-containing protein-like NW_004955552 1215533 1295221 - 102026575 AGCD01072760;AGCD01072761;AGCD01072762;AGCD01072763;AGCD01072764;AGCD01072765;AGCD01072766;AGCD01072767;AGCD01072768;GBCE01065484;GBDK01037957;XM_013508592;XM_013508593;XM_013508594;XM_013508595;XM_013508596 XP_013364046;XP_013364047;XP_013364048;XP_013364049;XP_013364050 MODEL 8791479 protein-coding LOC102025521 zinc finger protein 709-like NW_004955569 77692 111038 + 102025521 AGCD01074558;AGCD01074559;AGCD01074560;GBDI01243272;XM_013509368 XP_013364822 MODEL 8838920 protein-coding Xaf1 XIAP associated factor 1 ENCODES a protein that exhibits molecular sequestering activity (ortholog); INVOLVED IN negative regulation of protein-containing complex assembly (ortholog); negative regulation of type I interferon production (ortholog); response to interferon-beta (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); Colonic Neoplasms (ortholog); Colorectal Neoplasms (ortholog); FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955467 12240075 12257595 + 102009488 AGCD01051626;AGCD01051627;GBBH01163422;XM_005399676;XM_005399677 XP_005399733;XP_005399734 MODEL 8891192 protein-coding Sptbn1 spectrin beta, non-erythrocytic 1 ENCODES a protein that exhibits ankyrin binding (ortholog); GTPase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); central nervous system development (ortholog); central nervous system formation (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Beckwith-Wiedemann syndrome (ortholog); Bone Fractures (ortholog); DEVELOPMENTAL DELAY, IMPAIRED SPEECH, AND BEHAVIORAL ABNORMALITIES (ortholog); FOUND IN axolemma (ortholog); cortical cytoskeleton (ortholog); cuticular plate (ortholog) NW_004955441 20248578 20378038 + 102005304 AGCD01037400;GBDF01051818;XM_005391031;XM_005391032;XM_005391034;XM_005391035 XP_005391088;XP_005391089;XP_005391091;XP_005391092 MODEL 10214200 protein-coding LOC106146412 uncharacterized LOC106146412 NW_004955478 896433 920971 + 106146412 AGCD01055749;AGCD01055750;XM_013503130 XP_013358584 MODEL 39132523 snorna SNORD14 Small nucleolar RNA SNORD14 8890008 protein-coding LOC102021365 histone H2A.Z ENCODES a protein that exhibits chromatin DNA binding (ortholog); nucleosomal DNA binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to estradiol stimulus (ortholog); cellular response to insulin stimulus (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN Barr body (ortholog); euchromatin (ortholog); heterochromatin (ortholog) NW_004955496 7733910 7735525 + 102021365 AGCD01062383;AGCD01062384;GBDF01006515;XM_005406261;XM_005406262 XP_005406318;XP_005406319 MODEL 8971369 ncrna LOC102027614 uncharacterized LOC102027614 NW_004955408 36178683 36187781 + 102027614 AGCD01008977;AGCD01008978;GBDF01260991;XR_259734 MODEL 8870504 protein-coding LOC102018035 sialic acid-binding Ig-like lectin 8 NW_004955558 1238069 1248047 - 102018035 AGCD01073424;GBBH01137499;XM_005412701;XM_013508887;XM_013508888;XM_013508889;XM_013508890;XM_013508891;XM_013508892;XM_013508893;XM_013508894;XR_001232331;XR_001232332 XP_005412758;XP_013364341;XP_013364342;XP_013364343;XP_013364344;XP_013364345;XP_013364346;XP_013364347;XP_013364348 MODEL 8778209 protein-coding LOC102008851 solute carrier family 7 member 13-like NW_004955417 3044836 3065300 + 102008851 AGCD01017903;XM_013512697 XP_013368151 MODEL 8937180 protein-coding LOC102023807 E3 ubiquitin-protein ligase TRIM38-like NW_004955483 1076890 1091510 + 102023807 AGCD01057639;AGCD01057640;GBCQ01174866;XM_013503772;XM_013503773 XP_013359226;XP_013359227 MODEL 8720768 protein-coding LOC102029356 keratin, type I cuticular Ha3-I-like NW_004955451 15752134 15756262 - 102029356 AGCD01043636;AGCD01043637;XM_005394580 XP_005394637 MODEL 8862922 ncrna LOC102004473 uncharacterized LOC102004473 NW_004955476 518058 533073 - 102004473 AGCD01055195;GBBH01074467;XR_001230791;XR_001230792;XR_263616 MODEL 39133490 snrna U4 U4 spliceosomal RNA 8774616 protein-coding P3h3 prolyl 3-hydroxylase 3 INVOLVED IN collagen biosynthetic process (ortholog); negative regulation of cell population proliferation (ortholog); peptidyl-lysine hydroxylation (ortholog); ASSOCIATED WITH osteoarthritis (ortholog); FOUND IN catalytic complex (ortholog) NW_004955413 4429558 4440602 + 102015397 AGCD01013614;AGCD01013615;GBDJ01018581;GBDK01194544;XM_013511317 XP_013366771 MODEL 8728972 pseudo LOC102012373 ubiquitin-conjugating enzyme E2 Q1 pseudogene NW_004955444 9094091 9096386 + 102012373 AGCD01038958 MODEL 9026129 protein-coding LOC102009223 cytochrome P450 1B1 ENCODES a protein that exhibits estrogen 16-alpha-hydroxylase activity (ortholog); estrogen 2-hydroxylase activity (ortholog); heme binding (ortholog); INVOLVED IN adrenal gland development (ortholog); angiogenesis (ortholog); arachidonate metabolic process (ortholog); PARTICIPATES IN phase I biotransformation pathway via cytochrome P450; ASSOCIATED WITH acute kidney failure (ortholog); acute lymphoblastic leukemia (ortholog); adenoma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955441 5803397 5812131 - 102009223 AGCD01036887;GBDF01179111;XM_005390882;XM_013517545 XP_005390939;XP_013372999 MODEL 9065194 ncrna LOC102018396 uncharacterized LOC102018396 NW_004955417 27113467 27122607 + 102018396 AGCD01018533;GBCE01184006;XR_260504 MODEL 8901511 protein-coding Pnpla7 patatin like domain 7, lysophospholipase ENCODES a protein that exhibits phosphatidylcholine lysophospholipase A1 activity (ortholog); INVOLVED IN phosphatidylcholine catabolic process (ortholog); ASSOCIATED WITH Autosomal Recessive Peripheral Neuropathy with or without Impaired Intellectual Development (ortholog); mulibrey nanism (ortholog); primary ovarian insufficiency (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); lipid droplet (ortholog) NW_004955513 5376690 5436095 - 102016084 AGCD01066969;GBDF01043420;XM_005408619;XM_005408620;XM_005408621;XM_013506659;XM_013506660 XP_005408676;XP_005408677;XP_005408678;XP_013362113;XP_013362114 MODEL 9037388 ncrna LOC102030044 uncharacterized LOC102030044 NW_004955458 1335260 1338702 - 102030044 AGCD01047175;GBCQ01150495;XR_262961 MODEL 10108911 protein-coding Trnp1 TMF1 regulated nuclear protein 1 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN cerebellar cortex morphogenesis (ortholog); neural precursor cell proliferation (ortholog); regulation of cell cycle (ortholog); FOUND IN euchromatin (ortholog); nucleus (ortholog) NW_004955452 6335463 6341657 + 106149755 AGCD01044105;AGCD01044106;GBBH01186332;GBDF01207830;XM_013519741 XP_013375195 MODEL 39131501 protein-coding SBK1 SH3 domain binding kinase 1 8948285 protein-coding Ifih1 interferon induced with helicase C domain 1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); double-stranded RNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to exogenous dsRNA (ortholog); defense response to virus (ortholog); ASSOCIATED WITH Abnormal Reflexes (ortholog); Aicardi-Goutieres syndrome (ortholog); Aicardi-Goutieres Syndrome 7 (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog) NW_004955449 11538869 11596502 + 102016765 AGCD01042091;AGCD01042092;GBDK01395379;XM_005393309 XP_005393366 MODEL 9017902 pseudo LOC102028253 protein FAM133B pseudogene NW_004955403 579488 582031 + 102028253 AGCD01001698 MODEL 9043035 protein-coding Pik3c2a phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-4,5-bisphosphate 3-kinase activity (ortholog); 1-phosphatidylinositol-4-phosphate 3-kinase activity (ortholog); INVOLVED IN autophagosome organization (ortholog); cellular response to starvation (ortholog); endocytosis (ortholog); PARTICIPATES IN phosphoinositide metabolic pathway; ASSOCIATED WITH Dwarfism (ortholog); Oculoskeletodental Syndrome (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955414 31896161 31999730 - 102007989 AGCD01015764;AGCD01015765;AGCD01015766;AGCD01015767;GBDJ01180231;XM_005380376;XM_013512017 XP_005380433;XP_013367471 MODEL 8838681 protein-coding Erf ETS2 repressor factor ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN chorio-allantoic fusion (ortholog); ectodermal cell differentiation (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH Arnold-Chiari Malformation (ortholog); brain disease (ortholog); CHITAYAT SYNDROME (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955555 654945 661097 + 102027684 AGCD01073042;GBBH01090836;GBCE01095401;XM_005412381;XM_005412382;XM_013508752 XP_005412438;XP_005412439;XP_013364206 MODEL 8969136 protein-coding Ndfip1 Nedd4 family interacting protein 1 ENCODES a protein that exhibits WW domain binding (ortholog); INVOLVED IN intracellular iron ion homeostasis (ortholog); negative regulation of inflammatory response (ortholog); negative regulation of interleukin-4 production (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); stroke (ortholog); FOUND IN cell cortex (ortholog); endosome membrane (ortholog); extracellular region (ortholog) NW_004955415 11643846 11666131 - 102028293 AGCD01016168;GBBH01000930;XM_013512124 XP_013367578 MODEL 8962195 ncrna LOC102020564 uncharacterized LOC102020564 NW_004955478 2028321 2032929 - 102020564 AGCD01055783;GBDF01248867;XR_263685 MODEL 8946861 protein-coding Klhl9 kelch like family member 9 ENCODES a protein that exhibits cullin family protein binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); regulation of cytokinesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); midbody (ortholog) NW_004955472 12851352 12854245 - 102007110 AGCD01053821;GBCC01033131;XM_005401171 XP_005401228 MODEL 8916423 pseudo LOC102024104 mth938 domain-containing protein pseudogene NW_004955466 13831017 13831425 + 102024104 AGCD01051187 MODEL 8723365 pseudo LOC102011967 serine-rich single-pass membrane protein 1-like NW_004955411 5417085 5417628 - 102011967 AGCD01011638 MODEL 8904498 ncrna LOC102006222 uncharacterized LOC102006222 NW_004955461 4118997 4141681 + 102006222 AGCD01048858;AGCD01048859;AGCD01048860;XR_263079 MODEL 9068247 pseudo LOC102025167 THUMP domain-containing protein 3 pseudogene NW_004955534 1630167 1631771 - 102025167 AGCD01070504 MODEL 10291893 protein-coding LOC106146962 uncharacterized LOC106146962 NW_004955508 4373397 4382687 - 106146962 AGCD01065866;GBDF01198867;XM_013506247 XP_013361701 MODEL 8737009 ncrna LOC102026932 uncharacterized LOC102026932 NW_004955403 44902071 44930564 - 102026932 AGCD01002808;GBCQ01112265;XR_259235 MODEL 9064300 ncrna LOC102007320 uncharacterized LOC102007320 NW_004955413 65629 71480 + 102007320 AGCD01013436;XR_260039 MODEL 9000228 protein-coding LOC102015346 uncharacterized LOC102015346 NW_004955534 1116230 1117449 - 102015346 AGCD01070487;GBDF01063886;XM_013507701 XP_013363155 MODEL 8764864 protein-coding LOC102005878 RNA-binding protein NOB1-like NW_004957102 190 886 + 102005878 AGCD01080498;XM_005415224 XP_005415281 MODEL 9013400 protein-coding Pgc progastricsin ENCODES a protein that exhibits aspartic-type endopeptidase activity (ortholog); INVOLVED IN positive regulation of antibacterial peptide production (ortholog); FOUND IN extracellular region (ortholog) NW_004955437 8142523 8153044 - 102015240 AGCD01034479;GBDJ01263197;XM_005389695 XP_005389752 MODEL 10391474 pseudo LOC106148060 zinc finger protein 300-like NW_004955415 3665365 3671487 + 106148060 AGCD01015949 MODEL 8720450 protein-coding Bhmt betaine--homocysteine S-methyltransferase ENCODES a protein that exhibits betaine-homocysteine S-methyltransferase activity (ortholog); identical protein binding (ortholog); methyltransferase activity (ortholog); INVOLVED IN amino-acid betaine metabolic process (ortholog); L-methionine biosynthetic process (ortholog); L-methionine salvage (ortholog); PARTICIPATES IN choline metabolic pathway; dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; ASSOCIATED WITH alcohol-associated liver disease (ortholog); cerebral infarction (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytosol (ortholog); extracellular exosome (ortholog); extracellular region (ortholog) NW_004955425 21992219 22009389 - 102013102 AGCD01025810;AGCD01025811;AGCD01025812;GBCQ01010786;XM_005386012 XP_005386069 MODEL 10328034 protein-coding LOC106149250 serine/arginine repetitive matrix protein 1-like NW_004955441 19520486 19530118 + 106149250 AGCD01037348;GBDF01253386;XM_013517525 XP_013372979 MODEL 8985272 protein-coding LOC102003104 uncharacterized LOC102003104 NW_004955412 13999049 14010479 - 102003104 AGCD01012849;AGCD01012850;GBCB01025463;XM_013510960;XM_013510961;XM_013510962;XM_013510963;XM_013510964;XM_013510965;XM_013510966;XR_001232853;XR_001232854 XP_013366414;XP_013366415;XP_013366416;XP_013366417;XP_013366418;XP_013366419;XP_013366420 MODEL 9037273 pseudo LOC102025524 cytochrome P450 2A13-like NW_004955578 361399 374483 - 102025524 AGCD01075477;AGCD01075478;AGCD01075479 MODEL 8704636 protein-coding Shf Src homology 2 domain containing F PARTICIPATES IN platelet-derived growth factor signaling pathway NW_004955409 8219295 8227877 + 102021316 AGCD01009387;GBDJ01390482;XM_013510314;XM_013510315 XP_013365768;XP_013365769 MODEL 8879320 ncrna LOC102003417 uncharacterized LOC102003417 NW_004955409 3940674 3968535 + 102003417 AGCD01009268;AGCD01009269;GBDF01016673;XR_259752 MODEL 8731827 protein-coding Tep1 telomerase associated protein 1 ENCODES a protein that exhibits enzyme binding (ortholog); p53 binding (ortholog); RNA binding (ortholog); INVOLVED IN telomere maintenance via recombination (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); intrahepatic cholangiocarcinoma (ortholog); Lung Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nuclear matrix (ortholog); ribonucleoprotein complex (ortholog) NW_004955550 1162067 1215746 - 102025294 AGCD01072552;AGCD01072553;AGCD01072554;AGCD01072555;AGCD01072556;GBDI01225734;GBDI01225741;XM_013508569 XP_013364023 MODEL 8994699 protein-coding Sptbn2 spectrin beta, non-erythrocytic 2 ENCODES a protein that exhibits structural constituent of postsynapse (ortholog); INVOLVED IN adult behavior (ortholog); cellular response to ethanol (ortholog); cerebellar Purkinje cell layer morphogenesis (ortholog); ASSOCIATED WITH autosomal dominant cerebellar ataxia (ortholog); autosomal recessive cerebellar ataxia (ortholog); autosomal recessive spinocerebellar ataxia 14 (ortholog); FOUND IN apical plasma membrane (ortholog); cytosol (ortholog); endosome (ortholog) NW_004955422 18659489 18699338 + 102003663 AGCD01022958;AGCD01022959;GBCE01076820;XM_005384375;XM_005384376;XM_013513886 XP_005384432;XP_005384433;XP_013369340 MODEL 10242698 protein-coding LOC106146282 olfactory receptor 8H1-like NW_004955511 1216406 1218148 + 106146282 AGCD01066360;XM_013506368 XP_013361822 MODEL 8965466 ncrna LOC102018040 uncharacterized LOC102018040 NW_004955577 358724 365029 - 102018040 AGCD01075392;GBDF01178865;XR_001232463;XR_265079 MODEL 8708333 ncrna LOC102008854 uncharacterized LOC102008854 NW_004955418 25551560 25572621 - 102008854 AGCD01019367;GBDF01180351;XR_260584 MODEL 9014426 protein-coding Slc27a5 solute carrier family 27 member 5 ENCODES a protein that exhibits cholate-CoA ligase activity (ortholog); fatty acid transmembrane transporter activity (ortholog); long-chain fatty acid transmembrane transporter activity (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); bile acid metabolic process (ortholog); fatty acid transport (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH myoepithelioma (ortholog); FOUND IN basal plasma membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955584 1112387 1121500 - 102020177 AGCD01075980;GBDJ01219275;XM_005414398 XP_005414455 MODEL 39133491 snrna U4 U4 spliceosomal RNA 9061402 protein-coding P3h4 prolyl 3-hydroxylase family member 4 (inactive) INVOLVED IN bone remodeling (ortholog); collagen biosynthetic process (ortholog); collagen fibril organization (ortholog); FOUND IN catalytic complex (ortholog); endoplasmic reticulum (ortholog); synaptonemal complex (ortholog) NW_004955451 16020101 16024063 - 102007493 AGCD01043647;GBDF01119661;GBDF01119662;XM_013519276 XP_013374730 MODEL 8914996 protein-coding Tmppe transmembrane protein with metallophosphoesterase domain NW_004955421 342631 346581 - 102016602 AGCD01021557;XM_005383634 XP_005383691 MODEL 8877562 ncrna LOC102026582 uncharacterized LOC102026582 NW_004955445 7894537 7897772 - 102026582 AGCD01039555;GBDJ01324231;XR_262312 MODEL 8837596 pseudo LOC102018399 heterogeneous nuclear ribonucleoprotein A1-like NW_004955484 1981678 1990275 + 102018399 AGCD01058075;AGCD01058076 MODEL 10147467 ncrna LOC106150074 uncharacterized LOC106150074 NW_004955464 3852835 3877145 + 106150074 AGCD01049979;XR_001236667 MODEL 10360930 protein-coding LOC106146682 uncharacterized LOC106146682 NW_004955491 8294257 8323407 - 106146682 AGCD01060612;AGCD01060613;GBBH01132885;XM_013504628;XM_013504629;XM_013504630;XM_013504631;XM_013504632;XR_001231222;XR_001231223;XR_001231224;XR_001231225;XR_001231226;XR_001231227;XR_001231228;XR_001231229;XR_001231230;XR_001231231;XR_001231232 XP_013360082;XP_013360083;XP_013360084;XP_013360085;XP_013360086 MODEL 8942660 pseudo LOC102021368 ferritin light chain pseudogene NW_004955500 1650018 1650857 + 102021368 AGCD01063669 MODEL 9060294 ncrna LOC102019577 uncharacterized LOC102019577 NW_004955462 2824711 2834104 - 102019577 AGCD01049187;AGCD01049188;GBDJ01047276;XR_263091 MODEL 8968973 protein-coding Sbk2 SH3 domain binding kinase family member 2 NW_004955567 778971 783363 + 102019860 AGCD01074432;GBCB01000069;XM_005413309;XM_005413310 XP_005413366;XP_005413367 MODEL 8828639 ncrna LOC102027620 uncharacterized LOC102027620 NW_004955462 10037490 10043302 - 102027620 AGCD01049350;GBDF01056566;XR_263115 MODEL 8944561 protein-coding Bicc1 BicC family RNA binding protein 1 ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN determination of left/right symmetry (ortholog); heart development (ortholog); kidney development (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); autosomal recessive polycystic kidney disease (ortholog); congenital anomalies of kidney and urinary tract (ortholog) NW_004955425 12237611 12522321 + 102010385 AGCD01025504;AGCD01025505;AGCD01025506;AGCD01025507;AGCD01025508;AGCD01025509;AGCD01025510;AGCD01025511;GBCE01077752;XM_005385916;XM_013514878 XP_005385973;XP_013370332 MODEL 8826876 pseudo LOC102023809 olfactory receptor 50-like NW_004955419 5546209 5547141 - 102023809 AGCD01019823;XM_005382923 MODEL 8980780 protein-coding Ndfip2 Nedd4 family interacting protein 2 ENCODES a protein that exhibits WW domain binding (ortholog); INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endosome membrane (ortholog) NW_004955404 27981215 28051238 - 102007850 AGCD01003941;AGCD01003942;AGCD01003943;AGCD01003944;GBCB01021606;XM_005374124 XP_005374181 MODEL 9041395 protein-coding LOC102024105 T-cell surface glycoprotein CD1b2-like NW_004955468 10193294 10196217 + 102024105 AGCD01052071;XM_005400146;XM_005400147 XP_005400203;XP_005400204 MODEL 8716486 protein-coding Laptm5 lysosomal protein transmembrane 5 ENCODES a protein that exhibits enzyme binding (ortholog); protein sequestering activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); defense response to tumor cell (ortholog); Golgi to lysosome transport (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); IgA glomerulonephritis (ortholog); FOUND IN cytoplasmic vesicle (ortholog); lysosomal membrane (ortholog); lysosome (ortholog) NW_004955452 9335481 9358177 - 102030146 AGCD01044236;GBDJ01075689;XM_005394999 XP_005395056 MODEL 8892929 ncrna LOC102006226 uncharacterized LOC102006226 NW_004955412 3986877 4028160 - 102006226 AGCD01012589;AGCD01012590;GBDF01111005;XR_259969 MODEL 8946101 ncrna LOC102025169 uncharacterized LOC102025169 NW_004955537 234120 234410 + 102025169 AGCD01070855;GBDI01045663;XR_264769 MODEL 10246586 ncrna LOC106146283 uncharacterized LOC106146283 NW_004955403 31408673 31415519 + 106146283 AGCD01002417;GBCB01058477;XR_259216 MODEL 10357207 ncrna LOC106146963 uncharacterized LOC106146963 NW_004955508 102161 115796 + 106146963 AGCD01065729;AGCD01065730;AGCD01065731;GBCE01125989;XR_001231641 MODEL 8964142 ncrna LOC102009224 uncharacterized LOC102009224 NW_004955441 12505345 12519740 + 102009224 AGCD01037123;GBDF01308251;XR_262074 MODEL 8914011 protein-coding LOC102007321 uncharacterized LOC102007321 NW_004955413 2702114 2703313 - 102007321 AGCD01013558;GBCB01123825;XM_005378745;XM_005378746 XP_005378802;XP_005378803 MODEL 8734583 protein-coding Xbp1 X-box binding protein 1 ENCODES a protein that exhibits chromatin DNA binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN adipose tissue development (ortholog); angiogenesis (ortholog); cellular response to amino acid stimulus (ortholog); PARTICIPATES IN endoplasmic reticulum stress - the unfolded protein response pathway; forkhead class A signaling pathway; ASSOCIATED WITH Acute-On-Chronic Liver Failure (ortholog); borna disease (ortholog); Experimental Autoimmune Encephalomyelitis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955455 3037885 3041827 - 102023773 AGCD01045609;GBDI01012427;GBDK01000036;XM_013520381 XP_013375835 MODEL 10103338 protein-coding LOC106146413 translation initiation factor IF-2-like NW_004955478 7121512 7121739 - 106146413 AGCD01055945;GBDF01157902;XM_013503132 XP_013358586 MODEL 8912451 trna trnQ(ttg) tRNA-Gln MT 3745 3815 - 15822236 39132533 snorna SNORD14 Small nucleolar RNA SNORD14 9057989 protein-coding Ifit1 interferon induced protein with tetratricopeptide repeats 1 ENCODES a protein that exhibits enzyme inhibitor activity (ortholog); RNA binding (ortholog); RNA sequestering activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to exogenous dsRNA (ortholog); cellular response to type I interferon (ortholog); ASSOCIATED WITH endometriosis (ortholog); Human Influenza (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955425 3581705 3588528 - 102016075 AGCD01025294;GBDJ01403433;XM_005385850 XP_005385907 MODEL 8842186 protein-coding LOC102005879 keratin, type I cytoskeletal 42-like NW_004955451 15945587 15951095 - 102005879 AGCD01043641;GBBH01099405;XM_005394414 XP_005394471 MODEL 8987354 pseudo LOC102026584 cytochrome P450 2B4-like NW_004955578 25471 39673 + 102026584 AGCD01075457 MODEL 10181333 ncrna LOC106149251 uncharacterized LOC106149251 NW_004955441 6101961 6102634 + 106149251 AGCD01036901;GBDK01388908;XR_001235298 MODEL 8917558 protein-coding Erfe erythroferrone ENCODES a protein that exhibits hormone activity (ortholog); identical protein binding (ortholog); molecular sequestering activity (ortholog); INVOLVED IN intracellular iron ion homeostasis (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of autophagy (ortholog); FOUND IN extracellular region (ortholog) NW_004955542 2408504 2415522 - 102016097 AGCD01071522;GBDF01279710;XM_013508015;XM_013508016 XP_013363469;XP_013363470 MODEL 8742676 protein-coding LOC102029357 proteoglycan 4-like NW_004955405 37213421 37215034 + 102029357 AGCD01005448;XM_013518793 XP_013374247 MODEL 8788813 protein-coding LOC102025527 vomeronasal type-1 receptor 4-like NW_004955584 506682 507593 - 102025527 AGCD01075944;XM_005414412 XP_005414469 MODEL 9003011 pseudo LOC102012374 methyl-CpG-binding domain protein 3-like 2 pseudogene NW_004955563 759987 761698 + 102012374 AGCD01074086;XM_005413203 MODEL 8749548 protein-coding Spata16 spermatogenesis associated 16 INVOLVED IN spermatid development (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH male infertility (ortholog); male infertility due to globozoospermia (ortholog); spermatogenic failure (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955420 2910780 3134177 - 102004712 AGCD01020609;AGCD01020610;AGCD01020611;AGCD01020612;AGCD01020613;GBDF01084320;XM_005383016 XP_005383073 MODEL 8756803 protein-coding LOC102010001 seminal vesicle protein SVP-2-like NW_004955445 12108842 12114494 - 102010001 AGCD01039738;GBDK01186241;XM_005392441 XP_005392498 MODEL 10253414 ncrna LOC106146539 uncharacterized LOC106146539 NW_004955483 2163531 2171559 - 106146539 AGCD01057668;XR_001231018 MODEL 8953627 protein-coding Sptbn4 spectrin beta, non-erythrocytic 4 ENCODES a protein that exhibits actin binding (ortholog); ankyrin binding (ortholog); phosphatase binding (ortholog); INVOLVED IN adult behavior (ortholog); adult walking behavior (ortholog); axonogenesis (ortholog); ASSOCIATED WITH Congenital Myopathy with Neuropathy and Deafness (ortholog); Contracture (ortholog); Developmental Disabilities (ortholog); FOUND IN axon (ortholog); axon hillock (ortholog); axon initial segment (ortholog) NW_004955578 730916 813740 - 102010957 AGCD01075493;AGCD01075494;AGCD01075495;AGCD01075496;AGCD01075497;AGCD01075498;GBBH01158367;XM_013509644 XP_013365098 MODEL 8818470 pseudo LOC102026940 transcription elongation factor B polypeptide 1 pseudogene NW_004955406 5997423 5997747 - 102026940 AGCD01005744 MODEL 8728399 ncrna LOC102015347 uncharacterized LOC102015347 NW_004955541 3245231 3247302 + 102015347 AGCD01071440;GBDF01187123;XR_001232133;XR_264844 MODEL 8950384 pseudo LOC102023810 cell growth-regulating nucleolar protein pseudogene NW_004955485 8393270 8394886 - 102023810 AGCD01058712 MODEL 9007471 ncrna LOC102028257 uncharacterized LOC102028257 NW_004955931 6577 8967 + 102028257 AGCD01078686;GBDF01235555;XR_001232605;XR_265200 MODEL 8893022 protein-coding Pnpla8 patatin like domain 8, phospholipase A2 ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); phosphatidylcholine lysophospholipase A1 activity (ortholog); INVOLVED IN arachidonate metabolic process (ortholog); arachidonate secretion (ortholog); cardiolipin metabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); Mitochondrial Myopathy with Lactic Acidosis (ortholog); FOUND IN membrane (ortholog); mitochondrion (ortholog); peroxisomal membrane (ortholog) NW_004955410 12715072 12753433 - 102011514 AGCD01010864;GBDK01277528;XM_005377305;XM_005377306 XP_005377362;XP_005377363 MODEL 10161926 pseudo LOC106148061 peptidyl-prolyl cis-trans isomerase A pseudogene NW_004955415 6699502 6700655 + 106148061 AGCD01016024 MODEL 10094481 protein-coding LOC106146284 olfactory receptor 1J4-like NW_004955419 5440831 5441812 - 106146284 AGCD01019810;XM_013513109 XP_013368563 MODEL 8941135 protein-coding Pik3c2b phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 beta ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-4-phosphate 3-kinase activity (ortholog); lipid kinase activity (ortholog); INVOLVED IN autophagosome organization (ortholog); cellular response to starvation (ortholog); macroautophagy (ortholog); ASSOCIATED WITH Neoplasm Metastasis (ortholog); FOUND IN cytosol (ortholog); endocytic vesicle (ortholog); plasma membrane (ortholog) NW_004955406 40247690 40317556 - 102025206 AGCD01006659;GBDI01227056;XM_005375313 XP_005375370 MODEL 8996777 protein-coding P4ha1 prolyl 4-hydroxylase subunit alpha 1 ENCODES a protein that exhibits identical protein binding (ortholog); procollagen-proline 4-dioxygenase activity (ortholog); INVOLVED IN collagen fibril organization (ortholog); peptidyl-proline hydroxylation to 4-hydroxy-L-proline (ortholog); FOUND IN endoplasmic reticulum (ortholog); procollagen-proline 4-dioxygenase complex (ortholog) NW_004955437 18604525 18668800 + 102023742 AGCD01034805;AGCD01034806;AGCD01034807;GBDK01154223;XM_005389997;XM_005389998;XM_013516757 XP_005390054;XP_005390055;XP_013372211 MODEL 8764563 pseudo LOC102020569 arylacetamide deacetylase-like 4 pseudogene NW_004955486 790572 791361 + 102020569 AGCD01058889 MODEL 10225368 protein-coding Klk1 kallikrein 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); INVOLVED IN positive regulation of acute inflammatory response (ortholog); positive regulation of apoptotic process (ortholog); positive regulation of cell population proliferation (ortholog); PARTICIPATES IN kallikrein-kinin cascade pathway; ASSOCIATED WITH acute kidney failure (ortholog); Cardiomegaly (ortholog); cardiomyopathy (ortholog); FOUND IN acrosomal vesicle (ortholog); apical part of cell (ortholog); nucleus (ortholog) NW_004955559 457030 461086 + 106147433 AGCD01073586;GBBH01002600;XM_013508935 XP_013364389 MODEL 8885644 pseudo LOC102011971 60S ribosomal protein L3 pseudogene NW_004955468 5498734 5501315 - 102011971 AGCD01051971;XR_263421 MODEL 8986693 pseudo LOC102003418 neuroplastin pseudogene NW_004955409 8959472 8960507 + 102003418 AGCD01009426 MODEL 8989535 protein-coding Sbk3 SH3 domain binding kinase family member 3 NW_004955567 774343 778097 + 102019542 AGCD01074432;GBDI01036146;XM_005413308 XP_005413365 MODEL 8710505 pseudo LOC102008855 S-formylglutathione hydrolase pseudogene NW_004955483 8647789 8648240 - 102008855 AGCD01057841 MODEL 8702116 pseudo LOC102030049 nibrin pseudogene NW_004955409 16158130 16160312 + 102030049 AGCD01009710 MODEL 9054659 protein-coding P4ha2 prolyl 4-hydroxylase subunit alpha 2 ENCODES a protein that exhibits procollagen-proline 4-dioxygenase activity (ortholog); INVOLVED IN peptidyl-proline hydroxylation to 4-hydroxy-L-proline (ortholog); ASSOCIATED WITH Myopia 25, Autosomal Dominant (ortholog); FOUND IN endoplasmic reticulum (ortholog); procollagen-proline 4-dioxygenase complex (ortholog) NW_004955408 3574860 3607015 - 102026833 AGCD01008066;AGCD01008067;GBDK01003510;XM_013508278;XM_013508286;XM_013508292 XP_013363732;XP_013363740;XP_013363746 MODEL 8705061 ncrna LOC102009225 uncharacterized LOC102009225 NW_004955549 375942 379270 + 102009225 AGCD01072423;GBDF01288013;XR_264913 MODEL 8774516 ncrna LOC102010003 uncharacterized LOC102010003 NW_004955447 16623757 16625250 + 102010003 AGCD01041095;GBDF01280990;XR_262438 MODEL 10256008 pseudo LOC106150075 cytoskeleton-associated protein 2 pseudogene NW_004955464 7274411 7276209 - 106150075 AGCD01050057 MODEL 8799639 protein-coding LOC102003108 H/ACA ribonucleoprotein complex subunit 1-like NW_004955413 7012350 7019221 - 102003108 AGCD01013789;GBDI01034364;XM_005378922;XM_005378923 XP_005378979;XP_005378980 MODEL 8979085 protein-coding LOC102004474 protocadherin beta-2-like NW_004955415 12721832 12776585 - 102004474 AGCD01016225;AGCD01016226;AGCD01016227;AGCD01016228;AGCD01016229;AGCD01016230;AGCD01016231;GBDF01153219;GBDK01431475;XM_013512255 XP_013367709 MODEL 8862403 ncrna LOC102015348 uncharacterized LOC102015348 NW_004955438 17034208 17055292 - 102015348 AGCD01035429;AGCD01035430;GBDF01277238;XR_261941 MODEL 9007708 protein-coding Spata17 spermatogenesis associated 17 NW_004955406 599438 800369 - 102007504 AGCD01005621;AGCD01005622;GBDF01179516;XM_005374707;XM_005374709;XM_013519819 XP_005374764;XP_005374766;XP_013375273 MODEL 8765971 ncrna LOC102021370 uncharacterized LOC102021370 NW_004955426 17761060 17765467 - 102021370 AGCD01026506;GBDK01047985;XR_261199 MODEL 10074610 ncrna LOC106146683 uncharacterized LOC106146683 NW_004955491 8332648 8335496 - 106146683 AGCD01060613;AGCD01060614;GBBH01177574;XR_001231233;XR_001231234 MODEL 8927205 protein-coding Shfl shiftless antiviral inhibitor of ribosomal frameshifting ENCODES a protein that exhibits identical protein binding (ortholog); ribosome binding (ortholog); RNA binding (ortholog); INVOLVED IN defense response to virus (ortholog); negative regulation of translational frameshifting (ortholog); negative regulation of viral genome replication (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955495 1431677 1437035 + 102027994 AGCD01061690;AGCD01061691;GBCE01030619;GBDK01073870;XM_005405581 XP_005405638 MODEL 8855936 pseudo LOC102005881 solute carrier family 35 member E3-like NW_004955451 2883147 2889213 - 102005881 AGCD01043026 MODEL 9068001 protein-coding Tepsin TEPSIN adaptor related protein complex 4 accessory protein ENCODES a protein that exhibits protein-containing complex binding (ortholog); FOUND IN AP-4 adaptor complex (ortholog); coated vesicle membrane (ortholog); cytoplasm (ortholog) NW_004955506 1773560 1781467 + 102008335 AGCD01065273;GBDF01127350;XM_005407286;XM_005407287;XM_005407288;XM_005407290;XM_005407293;XM_005407294;XM_005407295;XM_013506031;XM_013506032;XM_013506033;XM_013506034;XM_013506035 XP_005407343;XP_005407344;XP_005407345;XP_005407347;XP_005407350;XP_005407351;XP_005407352;XP_013361485;XP_013361486;XP_013361487;XP_013361488;XP_013361489 MODEL 10325948 ncrna LOC106149252 uncharacterized LOC106149252 NW_004955441 10275220 10276541 - 106149252 AGCD01037082;XR_001235299 MODEL 9015446 protein-coding Bicd1 BICD cargo adaptor 1 ENCODES a protein that exhibits cytoskeletal anchor activity (ortholog); dynactin binding (ortholog); dynein complex binding (ortholog); INVOLVED IN microtubule anchoring at microtubule organizing center (ortholog); minus-end-directed organelle transport along microtubule (ortholog); negative regulation of phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); FOUND IN centrosome (ortholog); cytoplasmic microtubule (ortholog); cytoplasmic vesicle (ortholog) NW_004955505 3330933 3544752 - 102027765 AGCD01065020;AGCD01065021;AGCD01065022;AGCD01065023;AGCD01065024;AGCD01065025;AGCD01065026;AGCD01065027;AGCD01065028;AGCD01065029;AGCD01065030;GBBH01167340;GBDJ01318423;XM_005407175 XP_005407232 MODEL 8845341 ncrna LOC102025528 uncharacterized LOC102025528 NW_004955402 31369602 31409198 - 102025528 AGCD01000786;AGCD01000787;AGCD01000788;GBDF01279427;XR_001232668 MODEL 39133492 snrna U4 U4 spliceosomal RNA 8874220 protein-coding Erfl ETS repressor factor like NW_004955555 929984 941311 + 102008465 AGCD01073053;AGCD01073054;GBCE01120286;XM_005412413;XM_013508718 XP_005412470;XP_013364172 MODEL 8935355 protein-coding Spata18 spermatogenesis associated 18 ENCODES a protein that exhibits cardiolipin binding (ortholog); identical protein binding (ortholog); molecular condensate scaffold activity (ortholog); INVOLVED IN mitochondrial protein catabolic process (ortholog); mitophagy by internal vacuole formation (ortholog); positive regulation of cardiolipin metabolic process (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); prostate cancer (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial matrix (ortholog) NW_004955447 18401881 18437878 - 102018448 AGCD01041172;GBBH01000264;GBDJ01139180;XM_013518527;XM_013518528 XP_013373981;XP_013373982 MODEL 9061078 protein-coding Ndn necdin, MAGE family member ENCODES a protein that exhibits gamma-tubulin binding (ortholog); promoter-specific chromatin binding (ortholog); INVOLVED IN axon extension (ortholog); axonal fasciculation (ortholog); axonogenesis (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); autistic disorder (ortholog); Birth Weight (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955416 31125354 31127010 - 102021759 AGCD01017726;GBDI01326647;XM_005381676 XP_005381733 MODEL 8750984 pseudo LOC102007328 sal-like protein 4 NW_004955470 12748580 12750141 - 102007328 AGCD01052938 MODEL 8981616 protein-coding Pgcka1 PDCD10 and GCKIII kinases associated 1 INVOLVED IN regulation of cell cycle (ortholog); ASSOCIATED WITH cholestasis (ortholog); FOUND IN cell periphery (ortholog); plasma membrane (ortholog) NW_004955443 9540047 9628483 - 102010528 AGCD01038357;AGCD01038358;GBDI01328203;XM_005392012;XM_005392013 XP_005392069;XP_005392070 MODEL 10228609 ncrna LOC106146540 uncharacterized LOC106146540 NW_004955483 6846971 6859893 + 106146540 AGCD01057788;GBDI01160247;XR_001231020 MODEL 8723723 pseudo LOC102026946 signal recognition particle subunit SRP72-like NW_004955408 28510159 28521759 + 102026946 AGCD01008714 MODEL 10226474 pseudo LOC106146414 uncharacterized LOC106146414 NW_004955406 15453342 15498403 + 106146414 AGCD01005980;AGCD01005981 MODEL 8974197 protein-coding LOC102018404 death domain-containing membrane protein NRADD-like NW_004955420 25181345 25184190 - 102018404 AGCD01021346;GBBH01164455;XM_013513387;XM_013513388 XP_013368841;XP_013368842 MODEL 8830438 trna trnR(tcg) tRNA-Arg MT 9812 9879 + 15822210 39132546 snorna SNORD14 Small nucleolar RNA SNORD14 10391188 protein-coding LOC106146285 olfactory receptor 5B2-like NW_004955511 3105319 3106290 - 106146285 AGCD01066443;XM_013506381 XP_013361835 MODEL 9060254 pseudo LOC102018045 laccase domain-containing protein 1-like NW_004955592 623122 623565 - 102018045 AGCD01076320 MODEL 8725811 protein-coding LOC102026585 medium-wave-sensitive opsin 1 NW_004955580 774780 781232 + 102026585 AGCD01075622;GBDJ01280073;XM_005414184 XP_005414241 MODEL 8956288 pseudo LOC102029358 cytochrome c-like NW_004955405 34231756 34232128 + 102029358 AGCD01005369 MODEL 8902229 ncrna LOC102006227 uncharacterized LOC102006227 NW_004955465 7168095 7203880 + 102006227 AGCD01050456;AGCD01050457;GBBH01168662;XR_263249;XR_263250 MODEL 8725807 pseudo LOC102025172 vasculin pseudogene NW_004955540 1909030 1917626 + 102025172 AGCD01071308;XR_264822 MODEL 10251883 protein-coding LOC106146684 translation initiation factor IF-2-like NW_004955491 8222917 8235385 + 106146684 AGCD01060610;GBDF01039705;XM_013504636;XR_001231236 XP_013360090 MODEL 8726965 protein-coding Klk10 kallikrein related peptidase 10 ASSOCIATED WITH Breast Neoplasms (ortholog); ductal carcinoma in situ (ortholog); ovarian cancer (ortholog) NW_004955558 1466162 1471112 + 102023205 AGCD01073444;GBCQ01176836;XM_005412720 XP_005412777 MODEL 8794231 protein-coding Tmprss12 transmembrane serine protease 12 INVOLVED IN acrosome assembly (ortholog); binding of sperm to zona pellucida (ortholog); positive regulation of sperm capacitation (ortholog); FOUND IN acrosomal vesicle (ortholog); plasma membrane (ortholog) NW_004955547 1305697 1332131 + 102018227 AGCD01072208;AGCD01072209;AGCD01072210;AGCD01072211;AGCD01072212;AGCD01072213;GBDK01397321;XM_013508443 XP_013363897 MODEL 9063648 ncrna LOC102008856 uncharacterized LOC102008856 NW_004955484 4129624 4136398 + 102008856 AGCD01058202;GBDF01220583;XR_001231058;XR_001231059;XR_001231060;XR_001231061;XR_263884 MODEL 9066129 ncrna LOC102030051 uncharacterized LOC102030051 NW_004955410 2447475 2510517 - 102030051 AGCD01010631;GBDI01164354;XR_001232698;XR_259818 MODEL 8912590 protein-coding Sptbn5 spectrin beta, non-erythrocytic 5 ENCODES a protein that exhibits actin filament binding (ortholog); dynactin binding (ortholog); dynein intermediate chain binding (ortholog); INVOLVED IN Golgi organization (ortholog); lysosomal transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN apical cortex (ortholog); cortical cytoskeleton (ortholog); cytoplasm (ortholog) NW_004955416 8643177 8684469 - 102006454 AGCD01017064;AGCD01017065;GBBH01205829;XM_013512416 XP_013367870 MODEL 8712476 ncrna LOC102028258 uncharacterized LOC102028258 NW_004956812 12 2877 + 102028258 AGCD01080189;GBDK01070408;XR_265213 MODEL 8762323 ncrna LOC102019579 uncharacterized LOC102019579 NW_004955464 1398380 1406201 + 102019579 AGCD01049949;GBDK01036642;XR_263190 MODEL 8737378 protein-coding P4ha3 prolyl 4-hydroxylase subunit alpha 3 ENCODES a protein that exhibits procollagen-proline 4-dioxygenase activity (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; guanidinoacetate methyltransferase deficiency pathway NW_004955414 17344512 17376564 + 102017003 AGCD01015240;AGCD01015241;GBBH01210975;GBCE01148338;XM_005380452 XP_005380509 MODEL 9009717 protein-coding Pnpo pyridoxamine 5'-phosphate oxidase ENCODES a protein that exhibits FMN binding (ortholog); protein homodimerization activity (ortholog); pyridoxal phosphate binding (ortholog); INVOLVED IN pyridoxal 5'-phosphate biosynthetic process (ortholog); vitamin B6 metabolic process (ortholog); PARTICIPATES IN hypophosphatasia pathway; vitamin B6 metabolic pathway; ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 5 (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955451 13184861 13190933 - 102011938 AGCD01043458;GBDI01173325;XM_005394258 XP_005394315 MODEL 8752923 pseudo LOC102009226 40S ribosomal protein S13 pseudogene NW_004955550 1911159 1911637 - 102009226 AGCD01072597 MODEL 9026136 pseudo LOC102010005 39S ribosomal protein L47, mitochondrial pseudogene NW_004955449 1853430 1854383 + 102010005 AGCD01041814;XM_005393196 MODEL 8893509 pseudo LOC102003109 zinc finger CCCH domain-containing protein 11A pseudogene NW_004955467 2952870 2954035 + 102003109 AGCD01051321 MODEL 9034067 protein-coding LOC102020573 chromosome unknown open reading frame, human C3orf22 FOUND IN cytoplasm (ortholog) NW_004955421 21945527 21949229 + 102020573 AGCD01022125;GBDF01046381;XM_013513638 XP_013369092 MODEL 8910566 protein-coding Pgd phosphogluconate dehydrogenase ENCODES a protein that exhibits carbohydrate binding (ortholog); carboxylic acid binding (ortholog); NADP binding (ortholog); INVOLVED IN D-gluconate metabolic process (ortholog); NADP+ metabolic process (ortholog); NADPH regeneration (ortholog); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - oxidative phase; ribose 5-phosphate isomerase deficiency pathway; ASSOCIATED WITH asthma (ortholog); COVID-19 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytosol (ortholog) NW_004955486 3344705 3356906 - 102017025 AGCD01059023;AGCD01059024;GBDF01003677;XM_005404019 XP_005404076 MODEL 8993516 pseudo LOC102012375 stathmin-2 pseudogene NW_004955568 690849 691813 + 102012375 AGCD01074525;XM_005413457 MODEL 8887507 protein-coding LOC102024107 taste receptor type 2 member 140-like NW_004955413 8099439 8100275 - 102024107 AGCD01013846;XM_005379629 XP_005379686 MODEL 8859989 protein-coding Slc27a6 solute carrier family 27 member 6 ENCODES a protein that exhibits very long-chain fatty acid-CoA ligase activity (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); myocardial infarction (ortholog) NW_004955415 1973308 2041800 + 102007331 AGCD01015887;AGCD01015888;AGCD01015889;AGCD01015890;AGCD01015891;GBDF01251048;XM_005380551;XM_005380552 XP_005380608;XP_005380609 MODEL 8888727 protein-coding Shh sonic hedgehog signaling molecule ENCODES a protein that exhibits calcium ion binding (ortholog); cholesterol-protein transferase activity (ortholog); endopeptidase activity (ortholog); INVOLVED IN alpha-tubulin acetylation (ortholog); anatomical structure formation involved in morphogenesis (ortholog); androgen metabolic process (ortholog); PARTICIPATES IN altered Hedgehog signaling pathway; forkhead class A signaling pathway; glypican signaling pathway; ASSOCIATED WITH acrocallosal syndrome (ortholog); Anorectal Malformations (ortholog); atrioventricular septal defect (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); dendrite (ortholog) NW_004955491 8647133 8657381 - 102007024 AGCD01060619;AGCD01060620;GBCQ01149994;GBDK01027253;XM_013504572 XP_013360026 MODEL 8941527 ncrna LOC102005882 uncharacterized LOC102005882 NW_004955452 2251854 2256006 - 102005882 AGCD01043886;XR_262636 MODEL 10391469 ncrna LOC106146964 uncharacterized LOC106146964 NW_004955508 3830182 3837039 - 106146964 AGCD01065839;XR_001231643 MODEL 9020125 protein-coding Sbno1 strawberry notch homolog 1 INVOLVED IN negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of MAPK cascade (ortholog); negative regulation of neuroinflammatory response (ortholog); ASSOCIATED WITH Knee Osteoarthritis (ortholog); prostate cancer (ortholog); schizophrenia (ortholog); FOUND IN nucleus (ortholog) NW_004955482 5519165 5571416 + 102018729 AGCD01057341;AGCD01057342;GBBH01177306;XM_005403039;XM_005403043;XM_005403045;XM_005403047;XM_013503552;XM_013503553;XM_013503554 XP_005403096;XP_005403100;XP_005403102;XP_005403104;XP_013359006;XP_013359007;XP_013359008 MODEL 10110824 ncrna LOC106149253 uncharacterized LOC106149253 NW_004955441 6541339 6542524 + 106149253 AGCD01036929;GBDF01009214;XR_001235302 MODEL 8815130 protein-coding Terb1 telomere repeat binding bouquet formation protein 1 INVOLVED IN double-strand break repair involved in meiotic recombination (ortholog); homologous chromosome pairing at meiosis (ortholog); meiotic attachment of telomere to nuclear envelope (ortholog); ASSOCIATED WITH azoospermia (ortholog); spermatogenic failure 3 (ortholog); spermatogenic failure 60 (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear envelope (ortholog); nuclear inner membrane (ortholog) NW_004955433 23290030 23332886 - 102016510 AGCD01031957;GBDF01160139;XM_013516114;XM_013516115;XM_013516116;XM_013516117 XP_013371568;XP_013371569;XP_013371570;XP_013371571 MODEL 8792791 pseudo LOC102025529 programmed cell death protein 5 pseudogene NW_004955402 62713195 62713579 - 102025529 AGCD01001648 MODEL 8927603 protein-coding Ifit2 interferon induced protein with tetratricopeptide repeats 2 INVOLVED IN antiviral innate immune response (ortholog); cellular response to interferon-alpha (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Human Influenza (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955425 3685626 3692482 - 102016400 AGCD01025295;GBDK01239902;XM_005385851 XP_005385908 MODEL 8879147 protein-coding LOC102027621 uncharacterized protein C10orf68 homolog NW_004955462 4494015 4644753 - 102027621 AGCD01049228;AGCD01049229;AGCD01049230;AGCD01049231;AGCD01049232;AGCD01049233;AGCD01049234;AGCD01049235;AGCD01049236;GBDF01084142;XM_013521464;XM_013521465;XM_013521466;XM_013521467;XM_013521468;XM_013521469;XM_013521470;XR_001236619;XR_001236620;XR_001236621;XR_001236622;XR_001236623 XP_013376918;XP_013376919;XP_013376920;XP_013376921;XP_013376922;XP_013376923;XP_013376924 MODEL 8704306 pseudo LOC102007330 ATP synthase F(0) complex subunit B1, mitochondrial pseudogene NW_004955414 4403610 4404427 - 102007330 AGCD01014865 MODEL 10308948 ncrna LOC106148062 uncharacterized LOC106148062 NW_004955403 3967701 3970982 - 106148062 AGCD01001778;XR_001233191 MODEL 9030957 pseudo LOC102004476 uncharacterized LOC102004476 NW_004955476 7152638 7163867 + 102004476 AGCD01055347 MODEL 10378139 protein-coding LOC106146415 myosin IC heavy chain-like NW_004955478 9232702 9250174 + 106146415 AGCD01056056;AGCD01056057;AGCD01056058;GBDF01253467;XM_013503136 XP_013358590 MODEL 8931418 protein-coding Tmprss13 transmembrane serine protease 13 INVOLVED IN establishment of skin barrier (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955412 19111391 19139391 - 102003637 AGCD01012946;AGCD01012947;AGCD01012948;GBCE01059201;XM_005378223;XM_005378224;XM_005378225;XM_013511252 XP_005378280;XP_005378281;XP_005378282;XP_013366706 MODEL 8772562 protein-coding Pik3c2g phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma ENCODES a protein that exhibits 1-phosphatidylinositol 4-kinase activity (ortholog); 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-4-phosphate 3-kinase activity (ortholog); INVOLVED IN chemotaxis (ortholog); phosphatidylinositol-3-phosphate biosynthetic process (ortholog); ASSOCIATED WITH coronary artery disease (ortholog); esophageal atresia/tracheoesophageal fistula (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN membrane (ortholog); nuclear envelope (ortholog) NW_004955413 14454376 14764323 + 102010887 AGCD01014046;AGCD01014047;AGCD01014048;AGCD01014049;AGCD01014050;AGCD01014051;GBCE01112271;XM_005379037;XM_005379038;XM_005379039 XP_005379094;XP_005379095;XP_005379096 MODEL 8938232 pseudo LOC102015349 zinc finger CCCH domain-containing protein 15-like NW_004955543 941013 942296 + 102015349 AGCD01071608 MODEL 9064024 protein-coding LOC102021376 LIM zinc-binding domain-containing Nebulette-like NW_004955429 7358758 7369645 + 102021376 AGCD01028590;AGCD01028591;GBBH01110887;GBCQ01178173;XM_005386937 XP_005386994 MODEL 9039418 protein-coding Large1 LARGE xylosyl- and glucuronyltransferase 1 ENCODES a protein that exhibits glucuronosyltransferase activity (ortholog); glycosyltransferase activity (ortholog); hexosyltransferase activity (ortholog); INVOLVED IN acetylcholine receptor signaling pathway (ortholog); astrocyte differentiation (ortholog); basement membrane organization (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); congenital muscular dystrophy (ortholog); congenital muscular dystrophy-dystroglycanopathy type A1 (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); neuromuscular junction (ortholog) NW_004955405 41891430 42225066 - 102004669 AGCD01005567;AGCD01005568;AGCD01005569;AGCD01005570;AGCD01005571;AGCD01005572;AGCD01005573;AGCD01005574;AGCD01005575;AGCD01005576;AGCD01005577;AGCD01005578;GBBH01110525;GBCB01058063;XM_005374653 XP_005374710 MODEL 8718974 ncrna LOC102029360 uncharacterized LOC102029360 NW_004955406 35445518 35583778 - 102029360 AGCD01006525;AGCD01006526;AGCD01006527;AGCD01006528;GBDK01170412;XR_001236810 MODEL 8830978 pseudo LOC102026586 coiled-coil domain-containing protein 152-like NW_004955448 15881824 15882725 - 102026586 AGCD01041675 MODEL 39133493 snrna U4 U4 spliceosomal RNA 8996803 protein-coding LOC102023812 isopentenyl-diphosphate Delta-isomerase 1 NW_004955421 30172959 30177180 + 102023812 AGCD01022383;GBCQ01067273;GBDF01051865;XM_005383912 XP_005383969 MODEL 8777958 protein-coding LOC102025174 chromosome unknown open reading frame, human C16orf95 NW_004955541 1795301 1807870 - 102025174 AGCD01071388;GBDF01003427;XM_005410998;XM_005410999;XM_005411000 XP_005411055;XP_005411056;XP_005411057 MODEL 8866073 protein-coding Bicd2 BICD cargo adaptor 2 ENCODES a protein that exhibits dynactin binding (ortholog); dynein complex binding (ortholog); dynein light intermediate chain binding (ortholog); INVOLVED IN centrosome localization (ortholog); microtubule anchoring at microtubule organizing center (ortholog); microtubule-based movement (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); autism spectrum disorder (ortholog); autosomal dominant distal hereditary motor neuronopathy (ortholog); FOUND IN annulate lamellae (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955515 5060176 5105298 + 102025831 AGCD01067337;AGCD01067338;GBCE01133926;XM_005408901;XM_005408902 XP_005408958;XP_005408959 MODEL 8891058 protein-coding Spata19 spermatogenesis associated 19 INVOLVED IN sperm mitochondrion organization (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog); sperm flagellum (ortholog) NW_004955412 34684298 34689163 - 102027159 AGCD01013391;GBDF01007327;XM_005378581;XM_005378582;XM_013510989;XM_013510990 XP_005378638;XP_005378639;XP_013366443;XP_013366444 MODEL 8981912 protein-coding Erg ETS transcription factor ERG ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); leukemia (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 37372471 37613674 - 102019363 AGCD01007780;AGCD01007781;AGCD01007782;AGCD01007783;AGCD01007784;AGCD01007785;GBDK01013561;XM_005375759;XM_005375760;XM_005375761;XM_013504784 XP_005375816;XP_005375817;XP_005375818;XP_013360238 MODEL 8723968 pseudo LOC102008864 solute carrier family 25 member 36-like NW_004955421 22468586 22469764 + 102008864 AGCD01022136 MODEL 8999790 protein-coding Ndnf neuron derived neurotrophic factor ENCODES a protein that exhibits glycosaminoglycan binding (ortholog); heparin binding (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); extracellular matrix organization (ortholog); ASSOCIATED WITH endometriosis (ortholog); Hypogonadotropic Hypogonadism 25 with Anosmia (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog) NW_004955428 19552493 19587712 + 102020824 AGCD01028092;GBDI01383531;XM_005386790 XP_005386847 MODEL 8726655 protein-coding Slc28a1 solute carrier family 28 member 1 ENCODES a protein that exhibits azole transmembrane transporter activity (ortholog); pyrimidine nucleobase transmembrane transporter activity (ortholog); pyrimidine- and adenosine-specific:sodium symporter activity (ortholog); INVOLVED IN azole transmembrane transport (ortholog); cytidine transport (ortholog); nucleoside import across plasma membrane (ortholog); PARTICIPATES IN capecitabine pharmacodynamics pathway; capecitabine pharmacokinetics pathway; gemcitabine pharmacodynamics pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); High Myopia (ortholog); Uridine-Cytidineuria (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); plasma membrane (ortholog) NW_004955416 14226411 14267962 - 102009715 AGCD01017248;AGCD01017249;GBCQ01101688;XM_005381488;XM_013512686;XM_013512687 XP_005381545;XP_013368140;XP_013368141 MODEL 9000631 trna trnS1(gct) tRNA-Ser MT 11621 11681 + 15822231 8898897 pseudo LOC102003422 40S ribosomal protein S6 pseudogene NW_004955411 36312248 36313022 - 102003422 AGCD01012470 MODEL 8737599 protein-coding LOC102011975 olfactory receptor 52B2-like NW_004955414 21918896 21919849 - 102011975 AGCD01015437;XM_005380105 XP_005380162 MODEL 10103881 protein-coding LOC106146286 transmembrane protease serine 11B-like NW_004955447 4640908 4681556 + 106146286 AGCD01040725;AGCD01040726;AGCD01040727;AGCD01040728;AGCD01040729;XM_013518476 XP_013373930 MODEL 8998177 pseudo LOC102018046 eukaryotic translation initiation factor 5 pseudogene NW_004955596 640860 643263 + 102018046 AGCD01076525 MODEL 8924243 protein-coding P4hb prolyl 4-hydroxylase subunit beta ENCODES a protein that exhibits actin binding (ortholog); enzyme binding (ortholog); integrin binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular response to interleukin-7 (ortholog); insulin processing (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Cole-Carpenter syndrome (ortholog); Cole-Carpenter Syndrome 1 (ortholog); FOUND IN cytoskeleton (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955506 1307932 1322011 + 102025927 AGCD01065256;GBCE01007194;XM_005407252 XP_005407309 MODEL 8706379 protein-coding Pnpt1 polyribonucleotide nucleotidyltransferase 1 ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); identical protein binding (ortholog); miRNA binding (ortholog); INVOLVED IN cellular response to interferon-beta (ortholog); cellular response to oxidative stress (ortholog); liver regeneration (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 70 (ortholog); combined oxidative phosphorylation deficiency 13 (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955424 27407451 27449830 + 102006366 AGCD01025116;AGCD01025117;GBBH01149997;XM_005385770;XM_013514724 XP_005385827;XP_013370178 MODEL 9014062 pseudo LOC102020579 heat shock cognate 71 kDa protein pseudogene NW_004955423 15738116 15740017 + 102020579 AGCD01023813 MODEL 8735131 protein-coding Pgf placental growth factor ENCODES a protein that exhibits growth factor activity (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); branching involved in ureteric bud morphogenesis (ortholog); cellular response to hormone stimulus (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); amyotrophic lateral sclerosis (ortholog); ankylosing spondylitis (ortholog); FOUND IN extracellular region (ortholog) NW_004955523 616196 627055 + 102015139 AGCD01068471;AGCD01068472;GBBH01120043;GBDI01060117;XM_005409381 XP_005409438 MODEL 10128907 ncrna LOC106146541 uncharacterized LOC106146541 NW_004955483 3066615 3080803 - 106146541 AGCD01057697;XR_001231021 MODEL 10346803 protein-coding LOC106150076 collagen alpha-2(I) chain-like NW_004955464 8489993 8492743 - 106150076 AGCD01050088;GBDF01197430;XM_013521576 XP_013377030 MODEL 8956902 protein-coding Shisa2 shisa family member 2 INVOLVED IN negative regulation of fibroblast growth factor receptor signaling pathway (ortholog); negative regulation of Wnt signaling pathway (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955497 5453682 5459680 - 102024702 AGCD01062593;GBCE01134715;GBDK01235162;XM_005406336 XP_005406393 MODEL 8738234 ncrna LOC102026948 uncharacterized LOC102026948 NW_004955409 3548107 3563415 - 102026948 AGCD01009247;AGCD01009248;GBDF01147487;XR_259749 MODEL 8943550 pseudo LOC102030052 zinc finger protein 106 pseudogene NW_004955461 6097833 6227689 + 102030052 AGCD01048892;AGCD01048893;AGCD01048894;AGCD01048895;AGCD01048896;AGCD01048897;AGCD01048898;AGCD01048899;AGCD01048900 MODEL 8945799 protein-coding LOC102018405 uncharacterized protein C2orf78-like NW_004955486 1403402 1408342 - 102018405 AGCD01058952;AGCD01058953;XM_013504140 XP_013359594 MODEL 8908651 protein-coding LOC102025533 geranylgeranyl transferase type-2 subunit alpha NW_004956612 157 1489 + 102025533 AGCD01079890;GBCE01054014;GBCQ01038883;XM_013510231 XP_013365685 MODEL 8993599 protein-coding Ifit3 interferon induced protein with tetratricopeptide repeats 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN antiviral innate immune response (ortholog); cellular response to interferon-beta (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); congestive heart failure (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955425 3671303 3692478 - 102016726 AGCD01025295;XM_013514858 XP_013370312 MODEL 8734692 protein-coding LOC102028260 tubulin gamma-2 chain NW_004955451 16518900 16522871 + 102028260 AGCD01043687;GBCE01001128;GBDJ01004634;XM_013519146 XP_013374600 MODEL 8952687 ncrna LOC102008867 uncharacterized LOC102008867 NW_004955494 7040036 7040325 - 102008867 AGCD01061545;GBDF01288756;XR_264117 MODEL 39131424 protein-coding XBP1 X-box binding protein 1 8958301 protein-coding LOC102026952 uncharacterized LOC102026952 NW_004955410 10391827 10431004 + 102026952 AGCD01010795;GBCE01106188;GBDK01327077;XM_013510575;XM_013510576;XM_013510577 XP_013366029;XP_013366030;XP_013366031 MODEL 9059308 pseudo LOC102012379 60S ribosomal protein L6-like NW_004955573 953680 960330 - 102012379 AGCD01075010 MODEL 8964989 pseudo LOC102021377 nucleosome assembly protein 1-like 1 pseudogene NW_004955429 13983451 13984153 - 102021377 AGCD01028771 MODEL 9040056 protein-coding LOC102024108 olfactory receptor 51F1-like NW_004955414 20369929 20370864 - 102024108 AGCD01015371;XM_005380471 XP_005380528 MODEL 10176911 ncrna LOC106146685 uncharacterized LOC106146685 NW_004955491 6665485 6670036 + 106146685 AGCD01060566;GBDF01211466;XR_001231239 MODEL 8817908 protein-coding LOC102006228 histone H3 ENCODES a protein that exhibits structural constituent of chromatin (ortholog); INVOLVED IN epigenetic regulation of gene expression (ortholog); nucleosome assembly (ortholog); FOUND IN chromatin (ortholog); extracellular exosome (ortholog); nucleoplasm (ortholog) NW_004955465 13338289 13339268 + 102006228 AGCD01050601;XM_005398948 XP_005399005 MODEL 8782666 ncrna LOC102005885 uncharacterized LOC102005885 NW_004955405 12185694 12195667 + 102005885 AGCD01004849;GBDF01147002;XR_259373 MODEL 8971154 protein-coding Klk11 kallikrein related peptidase 11 ASSOCIATED WITH genetic disease (ortholog); Ichthyosis with Erythrokeratoderma (ortholog); FOUND IN extracellular region (ortholog); Golgi apparatus (ortholog) NW_004955558 1459761 1464582 + 102022431 AGCD01073444;GBDK01185238;XM_005412717;XM_013508910;XM_013508911;XM_013508912;XM_013508914;XM_013508915 XP_005412774;XP_013364364;XP_013364365;XP_013364366;XP_013364368;XP_013364369 MODEL 10072503 ncrna LOC106146965 uncharacterized LOC106146965 NW_004955508 1976516 1981149 + 106146965 AGCD01065778;GBDJ01301658;XR_001231645 MODEL 8813273 ncrna LOC102029361 uncharacterized LOC102029361 NW_004955406 38826336 38827324 + 102029361 AGCD01006610;GBDF01004650;XR_001236907;XR_001236908;XR_001236909 MODEL 8817562 protein-coding Terb2 telomere repeat binding bouquet formation protein 2 INVOLVED IN double-strand break repair involved in meiotic recombination (ortholog); homologous chromosome pairing at meiosis (ortholog); meiotic attachment of telomere to nuclear envelope (ortholog); ASSOCIATED WITH spermatogenic failure 3 (ortholog); spermatogenic failure 59 (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear envelope (ortholog); nuclear inner membrane (ortholog) NW_004955409 8352685 8371576 - 102025550 AGCD01009399;AGCD01009400;AGCD01009401;AGCD01009402;GBDF01156864;XM_005376747;XM_013510475 XP_005376804;XP_013365929 MODEL 8925516 protein-coding Sptlc1 serine palmitoyltransferase long chain base subunit 1 ENCODES a protein that exhibits serine C-palmitoyltransferase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); glycosphingolipid biosynthetic process (ortholog); positive regulation of lipophagy (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Charcot-Marie-Tooth disease (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic side of endoplasmic reticulum membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955515 57711 161012 + 102011471 AGCD01067181;AGCD01067182;AGCD01067183;AGCD01067184;GBDF01192203;XM_005408864 XP_005408921 MODEL 8769238 protein-coding Bicdl1 BICD family like cargo adaptor 1 ENCODES a protein that exhibits dynactin binding (ortholog); small GTPase binding (ortholog); INVOLVED IN Golgi to secretory granule transport (ortholog); neuron projection development (ortholog); FOUND IN centrosome (ortholog) NW_004955455 11503828 11606583 - 102020086 AGCD01046008;GBCQ01004436;GBDJ01422826;XM_005396589 XP_005396646 MODEL 10150971 protein-coding LOC106148063 uncharacterized LOC106148063 NW_004955415 32817556 32819055 - 106148063 AGCD01016735;GBDF01060723;XM_013512133 XP_013367587 MODEL 8979419 protein-coding LOC102019580 serpin B9-like NW_004955465 10259941 10270945 + 102019580 AGCD01050506;GBDI01306837;XM_005398910;XM_013521828;XM_013521829 XP_005398967;XP_013377282;XP_013377283 MODEL 8908613 protein-coding Erg28 ergosterol biosynthesis 28 homolog ENCODES a protein that exhibits identical protein binding (ortholog); FOUND IN transport vesicle (ortholog) NW_004955612 99107 109679 - 102022872 AGCD01077180;GBDK01014402;XM_005414961;XM_005414962 XP_005415018;XP_005415019 MODEL 8856439 protein-coding Slc28a2 solute carrier family 28 member 2 ENCODES a protein that exhibits neurotransmitter transmembrane transporter activity (ortholog); nucleoside transmembrane transporter activity (ortholog); nucleoside:sodium symporter activity (ortholog); INVOLVED IN adenosine transport (ortholog); inosine transport (ortholog); neurotransmitter transport (ortholog); PARTICIPATES IN azathioprine pharmacodynamics pathway; mercaptopurine pharmacodynamics pathway; mercaptopurine pharmacokinetics pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); FOUND IN apicolateral plasma membrane (ortholog); brush border membrane (ortholog); coated vesicle (ortholog) NW_004955409 8145723 8175256 - 102022678 AGCD01009382;GBDK01394240;XM_005376738;XR_001232515 XP_005376795 MODEL 8966527 pseudo LOC102010007 inaD-like protein pseudogene NW_004955402 42875359 42877029 - 102010007 AGCD01001050 MODEL 8873518 pseudo LOC102004478 beta-galactosidase-like NW_004955416 3761907 3786720 + 102004478 AGCD01016876 MODEL 10367354 pseudo LOC106146416 40S ribosomal protein S23 pseudogene NW_004955406 18594030 18594488 - 106146416 AGCD01006045 MODEL 8976222 protein-coding LOC102015351 olfactory receptor 4K3-like NW_004955550 529055 537383 + 102015351 AGCD01072509;XM_013508555 XP_013364009 MODEL 10080250 ncrna LOC106149254 uncharacterized LOC106149254 NW_004955441 10451660 10463453 - 106149254 AGCD01037087;GBDI01342664;XR_001235303 MODEL 8855559 protein-coding Sbno2 strawberry notch homolog 2 INVOLVED IN bone mineralization (ortholog); bone trabecula morphogenesis (ortholog); cellular response to interleukin-11 (ortholog) NW_004955495 6709190 6770816 + 102015737 AGCD01062089;AGCD01062090;AGCD01062091;GBDF01137090;GBDK01144604;XM_013505095 XP_013360549 MODEL 8819306 protein-coding Pnrc1 proline rich nuclear receptor coactivator 1 ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); COVID-19 (ortholog) NW_004955411 15837491 15841277 + 102004363 AGCD01011952;AGCD01011953;GBDF01303221;GBDJ01006301;XM_013510921 XP_013366375 MODEL 8977296 protein-coding Pgghg protein-glucosylgalactosylhydroxylysine glucosidase ENCODES a protein that exhibits protein-glucosylgalactosylhydroxylysine glucosidase activity (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); FOUND IN cytosol (ortholog) NW_004955476 11749483 11754008 - 102027522 AGCD01055474;GBCE01030057;XM_013502909;XM_013502910;XM_013502911;XM_013502912;XM_013502913;XM_013502914 XP_013358363;XP_013358364;XP_013358365;XP_013358366;XP_013358367;XP_013358368 MODEL 10196417 ncrna LOC106146542 uncharacterized LOC106146542 NW_004955483 8380723 8389698 - 106146542 AGCD01057833;AGCD01057834;GBDJ01339898;XR_001231026 MODEL 10215007 protein-coding LOC106150077 collagen alpha-1(II) chain-like NW_004955464 10610938 10615084 - 106150077 AGCD01050126;AGCD01050127;XM_013521577 XP_013377031 MODEL 8766111 trna trnS2(tga) tRNA-Ser MT 6876 6944 - 15822205 8710965 protein-coding Spata2 spermatogenesis associated 2 ENCODES a protein that exhibits protein-containing complex binding (ortholog); signaling receptor complex adaptor activity (ortholog); ubiquitin-specific protease binding (ortholog); INVOLVED IN protein K63-linked deubiquitination (ortholog); protein linear deubiquitination (ortholog); regulation of inflammatory response (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955445 8281280 8292951 + 102003595 AGCD01039573;AGCD01039574;GBCB01074585;GBDF01180673;XM_013518262 XP_013373716 MODEL 8794623 protein-coding Shisa3 shisa family member 3 INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955443 5367306 5372091 - 102008900 AGCD01038236;GBCQ01012580;XM_005391921;XM_013518028;XM_013518029 XP_005391978;XP_013373482;XP_013373483 MODEL 8775449 ncrna LOC102025536 uncharacterized LOC102025536 NW_004955405 36819194 36828223 - 102025536 AGCD01005428;GBDF01288987;XR_001235800 MODEL 10266658 ncrna LOC106148064 uncharacterized LOC106148064 NW_004955415 13318180 13319189 - 106148064 AGCD01016246;GBDF01196073;XR_001233197 MODEL 8856898 protein-coding LOC102011976 lysozyme C-like NW_004955470 12811161 12816338 - 102011976 AGCD01052943;GBCC01001129;XM_005400814 XP_005400871 MODEL 8936852 protein-coding Tmprss15 transmembrane serine protease 15 ASSOCIATED WITH Congenital, Hereditary, and Neonatal Diseases and Abnormalities (ortholog); enterokinase deficiency (ortholog) NW_004955407 19510453 19626668 - 102005898 AGCD01007306;AGCD01007307;AGCD01007308;AGCD01007309;AGCD01007310;XM_005375963 XP_005376020 MODEL 8766065 protein-coding Terf1 telomeric repeat binding factor 1 ENCODES a protein that exhibits ankyrin repeat binding (ortholog); DNA binding, bending (ortholog); double-stranded telomeric DNA binding (ortholog); INVOLVED IN meiotic telomere clustering (ortholog); negative regulation of DNA replication (ortholog); negative regulation of establishment of protein localization to telomere (ortholog); ASSOCIATED WITH breast cancer (ortholog); squamous cell carcinoma (ortholog); stomach cancer (ortholog); FOUND IN chromosome, telomeric region (ortholog); nuclear body (ortholog); nuclear telomere cap complex (ortholog) NW_004955444 7103282 7149450 - 102026167 AGCD01038891;AGCD01038892;AGCD01038893;AGCD01038894;AGCD01038895;AGCD01038896;GBDJ01318609;XM_013518223 XP_013373677 MODEL 8835026 ncrna LOC102026588 uncharacterized LOC102026588 NW_004955402 63074047 63077915 + 102026588 AGCD01001654;GBDF01085608;XR_259125 MODEL 8954166 protein-coding LOC102028261 putative methyltransferase-like protein 21E NW_004955404 8273937 8288642 - 102028261 AGCD01003350;GBDI01245291;XM_005374020;XM_013515907 XP_005374077;XP_013371361 MODEL 39132512 snorna SNORD14 Small nucleolar RNA SNORD14 39133494 snrna U4 U4 spliceosomal RNA 8711177 pseudo LOC102012383 zinc finger protein 132-like NW_004955584 1075427 1081804 - 102012383 AGCD01075978;XR_265112;XR_265113 MODEL 8993067 protein-coding Slc28a3 solute carrier family 28 member 3 ENCODES a protein that exhibits purine-specific nucleoside:sodium symporter activity (ortholog); pyrimidine- and adenosine-specific:sodium symporter activity (ortholog); uridine transmembrane transporter activity (ortholog); INVOLVED IN nucleoside transmembrane transport (ortholog); purine nucleoside transmembrane transport (ortholog); pyrimidine nucleoside transport (ortholog); PARTICIPATES IN azathioprine pharmacodynamics pathway; gemcitabine pharmacodynamics pathway; gemcitabine pharmacokinetics pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); FOUND IN brush border membrane (ortholog); endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955432 2892594 2948196 + 102003169 AGCD01030621;GBBH01011350;XM_013516020;XM_013516021;XM_013516022 XP_013371474;XP_013371475;XP_013371476 MODEL 8837009 protein-coding LOC102020582 olfactory receptor 7A17-like NW_004955495 8348920 8349873 + 102020582 AGCD01062200;XM_005406178 XP_005406235 MODEL 8841111 protein-coding LOC102021378 olfactory receptor 4A15-like NW_004955511 55303 56220 - 102021378 AGCD01066312;XM_005408175 XP_005408232 MODEL 8793086 protein-coding LOC102008868 CD70 antigen-like NW_004955495 3023146 3026631 - 102008868 AGCD01061815;GBDK01116023;XM_005405704;XM_005405705;XM_013505038;XM_013505039 XP_005405761;XP_005405762;XP_013360492;XP_013360493 MODEL 10283061 protein-coding LOC106146686 translation initiation factor IF-2-like NW_004955491 9127716 9128994 - 106146686 AGCD01060624;GBDF01147735;XM_013504658 XP_013360112 MODEL 8949314 ncrna LOC102007332 uncharacterized LOC102007332 NW_004955474 9962827 10021859 - 102007332 AGCD01054580;AGCD01054581;AGCD01054582;AGCD01054583;AGCD01054584;GBDF01078385;XR_001230747 MODEL 8885517 protein-coding LOC102009229 kallikrein-4-like NW_004955558 1932972 1936783 + 102009229 AGCD01073488;GBDF01079517;XM_005412753 XP_005412810 MODEL 8904411 ncrna LOC102003110 uncharacterized LOC102003110 NW_004955468 3568605 3569514 - 102003110 AGCD01051863;GBDI01159838;XR_001236890;XR_263383 MODEL 9066786 pseudo LOC102027622 metallothionein-1E pseudogene NW_004955410 33161724 33161909 + 102027622 AGCD01011358;XM_005377525 MODEL 8927680 pseudo LOC102018407 probable C-mannosyltransferase DPY19L2 pseudogene NW_004955493 1188575 1191835 + 102018407 AGCD01060884 MODEL 8836070 protein-coding Ndor1 NADPH dependent diflavin oxidoreductase 1 ENCODES a protein that exhibits electron transfer activity (ortholog); FAD binding (ortholog); FMN binding (ortholog); INVOLVED IN electron transport chain (ortholog); PARTICIPATES IN cytosolic iron-sulfur cluster protein assembly pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic [4Fe-4S] assembly targeting complex (ortholog) NW_004955513 5208040 5216618 + 102007685 AGCD01066962;GBCQ01070837;XM_005408593;XM_005408594;XM_005408596;XM_005408597;XM_013506595;XM_013506596 XP_005408650;XP_005408651;XP_005408653;XP_005408654;XP_013362049;XP_013362050 MODEL 8819299 pseudo LOC102003423 eukaryotic translation initiation factor 2 subunit 2 pseudogene NW_004955464 11721827 11722678 - 102003423 AGCD01050161 MODEL 8885877 pseudo LOC102019582 angio-associated migratory cell protein-like NW_004955466 6148040 6157739 + 102019582 AGCD01050911 MODEL 8937130 protein-coding Pik3c3 phosphatidylinositol 3-kinase catalytic subunit type 3 ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); phosphatidylinositol kinase activity (ortholog); protein kinase activity (ortholog); INVOLVED IN autophagosome assembly (ortholog); autophagosome maturation (ortholog); autophagy (ortholog); PARTICIPATES IN autophagy pathway; inositol metabolic pathway; phosphatidylinositol 3-kinase signaling pathway; FOUND IN autolysosome (ortholog); GABA-ergic synapse (ortholog); glutamatergic synapse (ortholog) NW_004955402 28081150 28195305 + 102021065 AGCD01000717;AGCD01000718;AGCD01000719;AGCD01000720;AGCD01000721;GBDJ01421951;GBDJ01421952;XM_005372847 XP_005372904 MODEL 8855649 protein-coding LOC102018049 vomeronasal type-2 receptor 116-like NW_004955622 20044 44768 - 102018049 AGCD01077381;XM_005415016 XP_005415073 MODEL 8832472 protein-coding Xcl1 X-C motif chemokine ligand 1 ENCODES a protein that exhibits chemokine activity (ortholog); chemokine receptor binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); cell-cell signaling (ortholog); cellular response to interleukin-4 (ortholog); ASSOCIATED WITH anti-basement membrane glomerulonephritis (ortholog); severe acute respiratory syndrome (ortholog); FOUND IN extracellular region (ortholog) NW_004955462 8594416 8598101 - 102017550 AGCD01049322;GBDJ01337507;XM_005398206 XP_005398263 MODEL 8930294 ncrna LOC102023813 uncharacterized LOC102023813 NW_004955494 3319129 3324144 + 102023813 AGCD01061470;GBCQ01014948;XR_264109 MODEL 8786018 protein-coding LOC102025178 uncharacterized LOC102025178 NW_004955546 1105712 1113339 + 102025178 AGCD01072041;GBDI01248776;XM_013508411;XM_013508412;XR_001232206 XP_013363865;XP_013363866 MODEL 9003765 ncrna LOC102004479 uncharacterized LOC102004479 NW_004955480 6033165 6036994 - 102004479 AGCD01056677;GBDF01220406;XR_001230890 MODEL 9017985 protein-coding P4htm prolyl 4-hydroxylase, transmembrane ENCODES a protein that exhibits 2-oxoglutarate-dependent dioxygenase activity (ortholog); hypoxia-inducible factor-proline dioxygenase activity (ortholog); INVOLVED IN regulation of erythrocyte differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); HYPOTONIA, HYPERVENTILATION, IMPAIRED INTELLECTUAL DEVELOPMENT, DYSAUTONOMIA, EPILEPSY, AND EYE ABNORMALITIES (ortholog); intellectual disability (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955532 1015259 1029749 + 102006608 AGCD01070161;GBBH01140814;XM_005410363 XP_005410420 MODEL 8783943 protein-coding LOC102024110 nucleolin-like NW_004955475 4819884 4825301 + 102024110 AGCD01054894;XM_005401704 XP_005401761 MODEL 8935185 protein-coding LOC102006229 histone H2A type 1-like NW_004955465 13334742 13337254 + 102006229 AGCD01050600;AGCD01050601;XM_005399011 XP_005399068 MODEL 9056956 pseudo LOC102005895 mitochondrial fission factor-like NW_004955455 5401970 5404213 + 102005895 AGCD01045725 MODEL 10211981 ncrna LOC106146966 uncharacterized LOC106146966 NW_004955508 2001597 2004170 - 106146966 AGCD01065779;GBDF01113013;XR_001231646 MODEL 9039238 protein-coding Klk12 kallikrein related peptidase 12 ENCODES a protein that exhibits peptidase activity (ortholog); serine-type peptidase activity (ortholog); INVOLVED IN proteolysis (ortholog) NW_004955558 1454512 1459105 + 102022130 AGCD01073444;GBDI01212460;XM_005412716;XM_013508918;XM_013508919 XP_005412773;XP_013364372;XP_013364373 MODEL 8832768 pseudo LOC102030053 pentatricopeptide repeat-containing protein 2, mitochondrial-like NW_004955463 5616363 5617253 - 102030053 AGCD01049643 MODEL 9013782 protein-coding LOC102029362 zona pellucida sperm-binding protein 3 receptor NW_004955406 42649370 42672771 + 102029362 AGCD01006713;GBDF01008374;XM_005375426;XM_013502882 XP_005375483;XP_013358336 MODEL 8950390 protein-coding Pnrc2 proline rich nuclear receptor coactivator 2 INVOLVED IN nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); P-body (ortholog) NW_004955452 3826337 3829896 + 102024081 AGCD01043949;GBCQ01004889;XM_005394788 XP_005394845 MODEL 8738993 protein-coding Ifit5 interferon induced protein with tetratricopeptide repeats 5 ENCODES a protein that exhibits double-stranded DNA binding (ortholog); poly(U) RNA binding (ortholog); RNA binding (ortholog); INVOLVED IN defense response to virus (ortholog); negative regulation of viral genome replication (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Human Influenza (ortholog); FOUND IN actin cytoskeleton (ortholog); apical part of cell (ortholog); IkappaB kinase complex (ortholog) NW_004955425 3569448 3575043 - 102015970 AGCD01025292;GBDF01065309;XM_013514766 XP_013370220 MODEL 8887401 protein-coding LOC102021380 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related-like NW_004955514 3946950 3967642 - 102021380 AGCD01067122;AGCD01067123;GBCB01073188;XM_005408817;XM_013506852;XM_013506853 XP_005408874;XP_013362306;XP_013362307 MODEL 9058763 protein-coding Sptlc2 serine palmitoyltransferase long chain base subunit 2 ENCODES a protein that exhibits serine C-palmitoyltransferase activity (ortholog); INVOLVED IN adipose tissue development (ortholog); ceramide biosynthetic process (ortholog); glycosphingolipid biosynthetic process (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic side of endoplasmic reticulum membrane (ortholog); serine palmitoyltransferase complex (ortholog) NW_004955438 1385431 1491534 - 102018224 AGCD01034981;AGCD01034982;AGCD01034983;AGCD01034984;AGCD01034985;GBCE01023390;XM_005390209 XP_005390266 MODEL 10255402 protein-coding LOC106150078 translation initiation factor IF-2-like NW_004955464 11120250 11135167 + 106150078 AGCD01050136;GBDF01263806;GBDJ01115032;XM_013521578 XP_013377032 MODEL 8949221 trna trnT(tgt) tRNA-Thr MT 15303 15370 + 15822215 9066885 protein-coding Bicdl2 BICD family like cargo adaptor 2 ENCODES a protein that exhibits small GTPase binding (ortholog) NW_004955442 14306144 14314060 + 102006166 AGCD01037810;GBCQ01178276;XM_005391372;XM_005391373 XP_005391429;XP_005391430 MODEL 8765377 protein-coding LOC102026960 olfactory receptor 150-like NW_004955412 25004436 25005383 + 102026960 AGCD01013133;XM_005378645 XP_005378702 MODEL 8821840 protein-coding LOC102010015 probable inactive 1-aminocyclopropane-1-carboxylate synthase-like protein 2 NW_004955785 867 11463 + 102010015 AGCD01078339;AGCD01078340;AGCD01078341;AGCD01078342;XM_013510191 XP_013365645 MODEL 8717643 protein-coding Ergic1 endoplasmic reticulum-golgi intermediate compartment 1 ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); Contracture (ortholog); neurogenic-type arthrogryposis multiplex congenita-2 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog); endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog) NW_004955408 25540149 25644108 + 102027272 AGCD01008647;GBCB01057939;XM_005376342;XM_013509355;XM_013509357;XM_013509359 XP_005376399;XP_013364809;XP_013364811;XP_013364813 MODEL 10196402 protein-coding LOC106146417 uncharacterized LOC106146417 NW_004955478 9251740 9259415 + 106146417 AGCD01056058;GBDF01276695;XM_013503137;XM_013503138;XM_013503139;XM_013503140 XP_013358591;XP_013358592;XP_013358593;XP_013358594 MODEL 9019030 protein-coding Tmprss2 transmembrane serine protease 2 INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH prostate adenocarcinoma (ortholog); prostatic hypertrophy (ortholog); severe acute respiratory syndrome (ortholog) NW_004955407 40958562 40985415 - 102023435 AGCD01007853;AGCD01007854;GBDI01006008;XM_005375854;XM_005375855;XM_013505291;XM_013505295;XM_013505300 XP_005375911;XP_005375912;XP_013360745;XP_013360749;XP_013360754 MODEL 9063362 protein-coding LOC102020585 melanoma-associated antigen 10-like NW_004955498 3052573 3053343 + 102020585 AGCD01062864;XM_005406475 XP_005406532 MODEL 10097599 protein-coding LOC106149255 protein CEBPZOS NW_004955441 5008528 5013489 + 106149255 AGCD01036867;GBBH01118613;XM_013517534;XM_013517535;XM_013517536;XM_013517537;XM_013517538 XP_013372988;XP_013372989;XP_013372990;XP_013372991;XP_013372992 MODEL 8933351 protein-coding Sbsn suprabasin FOUND IN cytoplasm (ortholog) NW_004955468 4746856 4751722 - 102020791 AGCD01051919;AGCD01051920;AGCD01051921;GBCC01000141;XM_013522549;XM_013522550 XP_013378003;XP_013378004 MODEL 9035468 protein-coding Slc29a1 solute carrier family 29 member 1 (Augustine blood group) ENCODES a protein that exhibits adenine transmembrane transporter activity (ortholog); cytidine transmembrane transporter activity (ortholog); guanine transmembrane transporter activity (ortholog); INVOLVED IN adenine transport (ortholog); adenosine transport (ortholog); cellular response to glucose stimulus (ortholog); PARTICIPATES IN azathioprine pharmacodynamics pathway; gemcitabine pharmacodynamics pathway; gemcitabine pharmacokinetics pathway; ASSOCIATED WITH alcohol dependence (ortholog); Alcohol Withdrawal Seizures (ortholog); Animal Disease Models (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955437 9850279 9862412 + 102018977 AGCD01034547;AGCD01034548;GBCE01034310;XM_005389803;XM_005389804;XM_005389805;XM_005389807 XP_005389860;XP_005389861;XP_005389862;XP_005389864 MODEL 8863113 protein-coding LOC102005897 keratin-associated protein 10-11-like NW_004955407 41627363 41628512 + 102005897 AGCD01007874;XM_005375888 XP_005375945 MODEL 10112749 protein-coding LOC106146287 olfactory receptor 7G2-like NW_004955563 353658 354626 - 106146287 AGCD01074063;XM_013509125 XP_013364579 MODEL 10240056 ncrna LOC106146967 uncharacterized LOC106146967 NW_004955508 6047654 6070056 - 106146967 AGCD01065912;GBDF01280471;XR_001231654 MODEL 9006043 protein-coding Spata20 spermatogenesis associated 20 ASSOCIATED WITH oligoasthenoteratozoospermia (ortholog); FOUND IN mitochondrion (ortholog) NW_004955451 11199115 11205978 - 102003716 AGCD01043342;GBDF01005759;XM_005394130 XP_005394187 MODEL 8796371 protein-coding Shisa4 shisa family member 4 NW_004955406 37959156 37961972 + 102019664 AGCD01006581;GBCB01005287;GBCE01115144;XM_013522274 XP_013377728 MODEL 8916773 protein-coding LOC102018410 vomeronasal type-2 receptor 116-like NW_004955495 45276 78599 - 102018410 AGCD01061594;AGCD01061595;AGCD01061596;XM_013505040 XP_013360494 MODEL 8754216 protein-coding LOC102015352 olfactory receptor 10G3 NW_004955550 2295101 2296367 - 102015352 AGCD01072621;XM_005412125 XP_005412182 MODEL 8781275 protein-coding Poc1a POC1 centriolar protein A INVOLVED IN bone development (ortholog); growth plate cartilage chondrocyte development (ortholog); mitotic spindle organization (ortholog); ASSOCIATED WITH argininosuccinic aciduria (ortholog); genetic disease (ortholog); isolated growth hormone deficiency type IA (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955532 3707680 3790565 - 102010197 AGCD01070295;AGCD01070296;AGCD01070297;AGCD01070298;GBBH01006023;GBDF01155240;XM_013507661;XM_013507662;XM_013507663;XM_013507664 XP_013363115;XP_013363116;XP_013363117;XP_013363118 MODEL 39132560 snorna SNORD14C Small nucleolar RNA SNORD14 8727115 protein-coding LOC102026962 DNA dC->dU-editing enzyme APOBEC-3H NW_004955413 25056223 25059761 + 102026962 AGCD01014392;GBBH01087809;XM_013511480 XP_013366934 MODEL 8753263 protein-coding Terf2 telomeric repeat binding factor 2 ENCODES a protein that exhibits double-stranded telomeric DNA binding (ortholog); enzyme binding (ortholog); G-rich strand telomeric DNA binding (ortholog); INVOLVED IN axonal transport of messenger ribonucleoprotein complex (ortholog); in utero embryonic development (ortholog); negative regulation of cellular senescence (ortholog); ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); xeroderma pigmentosum (ortholog); FOUND IN chromosome, telomeric region (ortholog); male germ cell nucleus (ortholog); nuclear body (ortholog) NW_004955484 7318813 7344221 + 102029400 AGCD01058325;AGCD01058326;AGCD01058327;GBDF01082280;XM_005403561;XM_005403563 XP_005403618;XP_005403620 MODEL 8936609 ncrna LOC102023815 uncharacterized LOC102023815 NW_004955423 8397379 8400657 + 102023815 AGCD01023629;GBDF01226423;XR_260960 MODEL 8783170 pseudo LOC102028273 caspase-3-like NW_004955459 12556717 12557639 - 102028273 AGCD01048255 MODEL 8784216 ncrna LOC102008869 uncharacterized LOC102008869 NW_004955423 21824204 21851556 + 102008869 AGCD01023949;GBCQ01142430;XR_260986 MODEL 10275261 ncrna LOC106146687 uncharacterized LOC106146687 NW_004955407 36102026 36106554 - 106146687 AGCD01007757;AGCD01007758;XR_001231240 MODEL 8959231 protein-coding Large2 LARGE xylosyl- and glucuronyltransferase 2 ENCODES a protein that exhibits dystroglycan binding (ortholog); glucuronosyltransferase activity (ortholog); glycosyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation via mannose (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955422 2045986 2052086 - 102007785 AGCD01022476;AGCD01022477;GBCE01183052;GBDJ01181464;XM_005384944 XP_005385001 MODEL 8775286 protein-coding Ergic2 ERGIC and golgi 2 INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog) NW_004955505 5548588 5583503 + 102015131 AGCD01065152;GBDF01112264;XM_005407138;XM_005407139;XM_005407140;XM_013505937;XM_013505938 XP_005407195;XP_005407196;XP_005407197;XP_013361391;XP_013361392 MODEL 8974663 ncrna LOC102007340 uncharacterized LOC102007340 NW_004955482 6352713 6353828 - 102007340 AGCD01057386;GBDF01082671;XR_263836 MODEL 8718235 protein-coding Pa2g4 proliferation-associated 2G4 ENCODES a protein that exhibits nucleic acid binding (ortholog); transcription corepressor activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of DNA-templated transcription (ortholog); positive regulation of cell differentiation (ortholog); ASSOCIATED WITH Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955458 3705704 3715782 + 102030282 AGCD01047338;AGCD01047339;GBDF01001985;XM_005397287 XP_005397344 MODEL 10382192 ncrna LOC106146543 uncharacterized LOC106146543 NW_004955483 5015241 5027659 + 106146543 AGCD01057748;GBCE01120198;XR_001231028;XR_001231029;XR_001231030 MODEL 8969772 protein-coding LOC102027623 sodium-dependent glucose transporter 1B-like NW_004955411 35939562 35963440 + 102027623 AGCD01012458;GBCQ01004869;XM_013510842;XM_013510843 XP_013366296;XP_013366297 MODEL 8811857 pseudo LOC102003112 olfactory receptor 10J4-like NW_004955468 11229311 11232918 + 102003112 AGCD01052123 MODEL 8904862 protein-coding LOC102030055 uncharacterized LOC102030055 NW_004955465 6577178 6581549 + 102030055 AGCD01050445;XM_005398859 XP_005398916 MODEL 9054283 protein-coding Klk15 kallikrein related peptidase 15 NW_004955559 450472 455179 + 102011596 AGCD01073586;XM_013508951 XP_013364405 MODEL 10244659 ncrna LOC106148065 uncharacterized LOC106148065 NW_004955415 29490377 29494822 + 106148065 AGCD01016653;AGCD01016654;GBCE01157282;XR_001233198 MODEL 10260273 ncrna LOC106150079 uncharacterized LOC106150079 NW_004955464 5775925 5777879 + 106150079 AGCD01050013;GBDI01194966;XR_001236670 MODEL 8714992 protein-coding LOC102026589 vomeronasal type-2 receptor 116-like NW_004955600 608288 614453 - 102026589 AGCD01076740;AGCD01076741;XM_005414814 XP_005414871 MODEL 8990296 protein-coding Trnt1 tRNA nucleotidyl transferase 1 ENCODES a protein that exhibits CCA tRNA nucleotidyltransferase activity (ortholog); CCACCA tRNA nucleotidyltransferase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN mitochondrial tRNA 3'-end processing (ortholog); rescue of stalled cytosolic ribosome (ortholog); tRNA 3'-terminal CCA addition (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); optic atrophy (ortholog); FOUND IN catalytic complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955421 10192065 10211527 - 102021249 AGCD01021870;GBBH01037146;XM_005383747;XM_005383748;XM_005383749 XP_005383804;XP_005383805;XP_005383806 MODEL 8834993 ncrna LOC102025180 uncharacterized LOC102025180 NW_004955441 15926164 15928611 + 102025180 AGCD01037262;GBDF01043836;XR_262089;XR_262090 MODEL 39133495 snrna U4 U4 spliceosomal RNA 8809659 pseudo LOC102004480 vacuole membrane protein 1 pseudogene NW_004955481 686239 728766 + 102004480 AGCD01056799;AGCD01056800;AGCD01056801;AGCD01056802;AGCD01056803 MODEL 8961638 protein-coding Shisa5 shisa family member 5 ENCODES a protein that exhibits molecular condensate scaffold activity (ortholog); WW domain binding (ortholog); INVOLVED IN intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); FOUND IN endoplasmic reticulum (ortholog); nuclear envelope (ortholog) NW_004955532 535992 544542 - 102027566 AGCD01070130;GBBH01033742;GBCB01120615;XM_013507610;XM_013507611 XP_013363064;XP_013363065 MODEL 8993491 ncrna LOC102010017 uncharacterized LOC102010017 NW_004955451 14756261 14759461 - 102010017 AGCD01043570;GBDK01285033;XR_262608 MODEL 8787459 protein-coding Spata21 spermatogenesis associated 21 ASSOCIATED WITH Liver Neoplasms (ortholog); polycystic ovary syndrome (ortholog) NW_004955527 1903607 1939020 + 102028460 AGCD01069420;GBBH01023649;XM_013507378;XM_013507379;XM_013507380;XM_013507381;XM_013507382;XM_013507383;XM_013507384 XP_013362832;XP_013362833;XP_013362834;XP_013362835;XP_013362836;XP_013362837;XP_013362838 MODEL 8843329 protein-coding LOC102018412 gastrokine-3-like NW_004955424 16081754 16088325 - 102018412 AGCD01024737;GBDI01336159;XM_005385655 XP_005385712 MODEL 8820965 protein-coding LOC102006233 olfactory receptor 10J4-like NW_004955468 11106424 11107365 - 102006233 AGCD01052114;XM_005400170 XP_005400227 MODEL 8889248 protein-coding Pggt1b protein geranylgeranyltransferase type I subunit beta ENCODES a protein that exhibits CAAX-protein geranylgeranyltransferase activity (ortholog); heterocyclic compound binding (ortholog); peptide binding (ortholog); INVOLVED IN CAAX-box protein maturation (ortholog); positive regulation of cell cycle (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH Lung Neoplasms (ortholog); FOUND IN CAAX-protein geranylgeranyltransferase complex (ortholog) NW_004955408 34994545 35049037 - 102022470 AGCD01008927;AGCD01008928;AGCD01008929;GBDI01357863;XM_005376520 XP_005376577 MODEL 8817817 pseudo LOC102003428 40S ribosomal protein S2 pseudogene NW_004955467 3259017 3259823 - 102003428 AGCD01051332 MODEL 8880834 ncrna LOC102025541 uncharacterized LOC102025541 NW_004955407 33304521 33306216 + 102025541 AGCD01007697;GBDJ01413832;XR_001231620 MODEL 8787900 protein-coding Poc1b POC1 centriolar protein B INVOLVED IN acrosome assembly (ortholog); cell morphogenesis (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); cone-rod dystrophy 20 (ortholog); fundus dystrophy (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955405 26720279 26786385 - 102014527 AGCD01005204;GBDF01005071;XM_005374437;XM_013518180 XP_005374494;XP_013373634 MODEL 8899852 protein-coding LOC102005899 uncharacterized LOC102005899 NW_004955408 4190159 4193209 - 102005899 AGCD01008091;GBDI01371406;XM_005376117 XP_005376174 MODEL 8749769 protein-coding Ifitm10 interferon induced transmembrane protein 10 NW_004955422 13556968 13572010 - 102013624 AGCD01022835;GBCE01165385;XM_013514315;XM_013514316 XP_013369769;XP_013369770 MODEL 8977932 protein-coding LOC102021383 zinc finger protein 490-like NW_004955524 1463424 1483515 + 102021383 AGCD01068752;AGCD01068753;AGCD01068754;GBCE01072813;GBDI01292151;XM_005409482 XP_005409539 MODEL 9064904 protein-coding Sptlc3 serine palmitoyltransferase long chain base subunit 3 ENCODES a protein that exhibits serine C-palmitoyltransferase activity (ortholog); INVOLVED IN sphingoid biosynthetic process (ortholog); sphingosine biosynthetic process (ortholog); ASSOCIATED WITH sensory peripheral neuropathy (ortholog); FOUND IN serine palmitoyltransferase complex (ortholog) NW_004955415 22532193 22686071 + 102028854 AGCD01016539;AGCD01016540;AGCD01016541;GBDF01224715;XM_013512291;XM_013512292 XP_013367745;XP_013367746 MODEL 10116182 ncrna LOC106146968 uncharacterized LOC106146968 NW_004955508 6085745 6093387 - 106146968 AGCD01065912;GBDF01280482;XR_001231655 MODEL 8728506 protein-coding Bicra BRD4 interacting chromatin remodeling complex associated protein ENCODES a protein that exhibits transcription regulator activator activity (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Coffin-Siris syndrome 1 (ortholog); Coffin-Siris syndrome 12 (ortholog); Developmental Disease (ortholog); FOUND IN nucleus (ortholog); SWI/SNF complex (ortholog) NW_004955574 1463656 1484709 + 102018239 AGCD01075180;AGCD01075181;GBCB01112015;GBCE01142278;XM_013509545 XP_013364999 MODEL 8851640 ncrna LOC102012385 uncharacterized LOC102012385 NW_004955592 538916 543806 - 102012385 AGCD01076317;GBDI01163562;XR_265140 MODEL 8896635 protein-coding LOC102018050 arylamine N-acetyltransferase 2-like NW_004955403 42312025 42335918 + 102018050 AGCD01002751;GBDK01432435;XM_005373604;XM_005373605;XM_005373606;XM_005373607;XM_013513595 XP_005373661;XP_005373662;XP_005373663;XP_005373664;XP_013369049 MODEL 10217989 ncrna LOC106146418 uncharacterized LOC106146418 NW_004955478 9277780 9280116 + 106146418 AGCD01056060;GBBH01054477;XR_001230839 MODEL 8895032 protein-coding Klk5 kallikrein related peptidase 5 ENCODES a protein that exhibits peptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN antibacterial peptide biosynthetic process (ortholog); positive regulation of G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN epidermal lamellar body (ortholog); extracellular region (ortholog) NW_004955558 1512478 1520522 + 102025182 AGCD01073445;GBCC01014879;XM_005412727 XP_005412784 MODEL 8828732 pseudo LOC102009232 phosphorylated adapter RNA export protein pseudogene NW_004955444 566028 567654 + 102009232 AGCD01038678 MODEL 8999276 pseudo LOC102029363 serine/arginine-rich splicing factor 7-like NW_004955406 32883231 32885373 + 102029363 AGCD01006455 MODEL 8947481 protein-coding Tmprss3 transmembrane serine protease 3 ENCODES a protein that exhibits sodium channel regulator activity (ortholog); INVOLVED IN intracellular sodium ion homeostasis (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 8 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); neuronal cell body (ortholog) NW_004955407 39332517 39351699 + 102013384 AGCD01007824;GBCQ01057658;XM_005375826;XM_005375828;XM_013505144;XM_013505147 XP_005375883;XP_005375885;XP_013360598;XP_013360601 MODEL 10086805 ncrna LOC106149256 uncharacterized LOC106149256 NW_004955405 10219394 10222979 + 106149256 AGCD01004808;GBDF01242237;XR_001235305 MODEL 8961118 protein-coding Ndp norrin cystine knot growth factor NDP ENCODES a protein that exhibits cytokine activity (ortholog); frizzled binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN action potential (ortholog); angiogenesis (ortholog); blood vessel remodeling (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH exudative vitreoretinopathy (ortholog); Hereditary Eye Diseases (ortholog); macular retinal edema (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog) NW_004955516 4218703 4244774 + 102006065 AGCD01067519;GBCE01165457;XM_005408998 XP_005409055 MODEL 8873928 protein-coding LOC102019587 taste receptor type 2 member 7-like NW_004955413 6997395 7003912 + 102019587 AGCD01013788;XM_005379616 XP_005379673 MODEL 10155970 ncrna LOC106146544 uncharacterized LOC106146544 NW_004955483 9745209 9767568 + 106146544 AGCD01057864;GBDF01261106;XR_001231033 MODEL 8830555 protein-coding LOC102007346 uncharacterized LOC102007346 NW_004955491 8656799 8664951 + 102007346 AGCD01060620;GBDK01151127;XM_013504571 XP_013360025 MODEL 8965296 protein-coding Slc29a2 solute carrier family 29 member 2 ENCODES a protein that exhibits adenine transmembrane transporter activity (ortholog); cytidine transmembrane transporter activity (ortholog); guanine transmembrane transporter activity (ortholog); INVOLVED IN adenine transport (ortholog); adenosine transport (ortholog); cellular response to insulin stimulus (ortholog); PARTICIPATES IN azathioprine pharmacodynamics pathway; mercaptopurine pharmacodynamics pathway; mercaptopurine pharmacokinetics pathway; FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955422 18960862 18970312 + 102012443 AGCD01022969;GBBH01177502;XM_005384407 XP_005384464 MODEL 8778323 protein-coding LOC102011979 protein unc-13 homolog B NW_004955472 869993 1019542 - 102011979 AGCD01053364;AGCD01053365;AGCD01053366;AGCD01053367;GBDF01156325;GBDK01081960;XM_013522964;XM_013522965;XM_013522966;XM_013522967 XP_013378418;XP_013378419;XP_013378420;XP_013378421 MODEL 9035853 pseudo LOC102003114 40S ribosomal protein S2 pseudogene NW_004955469 9118926 9122699 - 102003114 AGCD01052491 MODEL 9014005 protein-coding Xg Xg glycoprotein (Xg blood group) FOUND IN plasma membrane (ortholog) NW_004955499 1654037 1684150 + 102010921 AGCD01063377;AGCD01063378;AGCD01063379;GBDI01371761;XM_013505593;XM_013505594;XM_013505596;XM_013505597 XP_013361047;XP_013361048;XP_013361050;XP_013361051 MODEL 8797367 pseudo LOC102003430 olfactory receptor 10J5-like NW_004955468 11314436 11315226 - 102003430 AGCD01052125 MODEL 10384272 ncrna LOC106150080 uncharacterized LOC106150080 NW_004955464 5127299 5128697 + 106150080 AGCD01049999;GBCE01138596;XR_001236672 MODEL 9017465 trna trnV(tac) tRNA-Val MT 1021 1087 + 15822216 8866370 pseudo LOC102012388 serine/threonine-protein kinase VRK1-like NW_004955402 55411512 55414352 + 102012388 AGCD01001435 MODEL 8951103 pseudo LOC102023816 mortality factor 4-like protein 1 NW_004955423 5415622 5416748 + 102023816 AGCD01023560 MODEL 8895236 ncrna LOC102004481 uncharacterized LOC102004481 NW_004955482 1525707 1528873 - 102004481 AGCD01057219;AGCD01057220;GBDI01053452;XR_001230959;XR_263819 MODEL 8918681 ncrna LOC102028275 uncharacterized LOC102028275 NW_004955410 10704696 10712413 + 102028275 AGCD01010796;GBCB01010023;XR_001232728 MODEL 8748836 ncrna LOC102008872 uncharacterized LOC102008872 NW_004955424 19963501 19969899 + 102008872 AGCD01024841;GBDI01147421;XR_001234129;XR_001234130;XR_001234131;XR_261086;XR_261087 MODEL 10358970 ncrna LOC106146688 uncharacterized LOC106146688 NW_004955492 938429 942722 - 106146688 AGCD01060651;GBDJ01420190;XR_001231243 MODEL 8926439 protein-coding Spata22 spermatogenesis associated 22 INVOLVED IN fertilization (ortholog); gamete generation (ortholog); homologous chromosome pairing at meiosis (ortholog); ASSOCIATED WITH Canavan disease (ortholog); Primary Ovarian Insufficiency 25 (ortholog); Spermatogenic Failure 96 (ortholog); FOUND IN chromosome (ortholog) NW_004955467 13304314 13325228 + 102023134 AGCD01051670;AGCD01051671;GBDK01096055;XM_005399726;XM_005399727 XP_005399783;XP_005399784 MODEL 10155432 protein-coding LOC106146288 olfactory receptor 8H1-like NW_004955511 1097532 1102601 + 106146288 AGCD01066357;XM_013506422 XP_013361876 MODEL 8892193 protein-coding Sbspon somatomedin B and thrombospondin type 1 domain containing ASSOCIATED WITH Hepatomegaly (ortholog) NW_004955444 7068906 7094583 + 102011369 AGCD01038889;AGCD01038890;GBCQ01098259;XM_013518221 XP_013373675 MODEL 8850755 protein-coding Ergic3 ERGIC and golgi 3 INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); Experimental Neoplasms (ortholog); lung adenocarcinoma (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog); endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog) NW_004955422 25884138 25893237 - 102010597 AGCD01023269;GBDF01008497;XM_005384790;XM_005384791 XP_005384847;XP_005384848 MODEL 8979187 protein-coding Pik3ca phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-4,5-bisphosphate 3-kinase activity (ortholog); insulin receptor substrate binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); adipose tissue development (ortholog); autosome genomic imprinting (ortholog); PARTICIPATES IN adenosine signaling pathway; altered phosphatidylinositol 3-kinase signaling pathway; altered phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); adenoid cystic carcinoma (ortholog); Agenesis of Corpus Callosum (ortholog); FOUND IN intercalated disc (ortholog); lamellipodium (ortholog); phosphatidylinositol 3-kinase complex (ortholog) NW_004955420 8355415 8427024 + 102010490 AGCD01020717;AGCD01020718;AGCD01020719;GBBH01158420;GBCQ01061380;XM_013513381 XP_013368835 MODEL 8719237 protein-coding Paaf1 proteasomal ATPase associated factor 1 FOUND IN proteasome complex (ortholog) NW_004955414 17625117 17658183 - 102011528 AGCD01015246;AGCD01015247;GBCE01097154;XM_005379933 XP_005379990 MODEL 8858204 protein-coding LOC102025542 protein cordon-bleu NW_004955456 3131029 3225956 + 102025542 AGCD01046266;AGCD01046267;AGCD01046268;GBCQ01109656;XM_013520574 XP_013376028 MODEL 8712499 ncrna LOC102005902 uncharacterized LOC102005902 NW_004955409 9536684 9555161 + 102005902 AGCD01009443;AGCD01009444;GBDF01156061;XR_259761 MODEL 8884224 protein-coding Poc5 POC5 centriolar protein ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN centriole elongation (ortholog); negative regulation of centriole elongation (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); optic atrophy (ortholog); retinitis pigmentosa (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog) NW_004955425 25055259 25092101 + 102022720 AGCD01025908;AGCD01025909;GBCB01111720;GBDF01187988;XM_013514890;XM_013514891;XM_013514892 XP_013370344;XP_013370345;XP_013370346 MODEL 8917084 ncrna LOC102024112 uncharacterized LOC102024112 NW_004955417 16930439 16936030 - 102024112 AGCD01018277;GBDF01075894;XR_260483 MODEL 8762354 protein-coding Pgk1 phosphoglycerate kinase 1 ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); phosphoglycerate kinase activity (ortholog); INVOLVED IN canonical glycolysis (ortholog); cellular response to hypoxia (ortholog); epithelial cell differentiation (ortholog); PARTICIPATES IN gluconeogenesis pathway; glycolysis pathway; hypoxia inducible factor pathway; ASSOCIATED WITH generalized epilepsy (ortholog); genetic disease (ortholog); hemolytic anemia (ortholog); FOUND IN cytosol (ortholog); extracellular region (ortholog); membrane raft (ortholog) NW_004955557 1566534 1584799 + 102021398 AGCD01073300;GBDJ01005368;XM_005412630 XP_005412687 MODEL 39133367 snorna SNORD15 Small nucleolar RNA SNORD15 8914479 pseudo LOC102026590 guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 pseudogene NW_004955450 11136807 11144873 - 102026590 AGCD01042648;XM_005393867 MODEL 8730448 pseudo LOC102025184 vacuolar protein sorting-associated protein 45 pseudogene NW_004955443 208496 220334 + 102025184 AGCD01038092;AGCD01038093;AGCD01038094 MODEL 9001094 protein-coding LOC102020586 regenerating islet-derived protein 3-gamma-like NW_004955424 7406415 7408798 - 102020586 AGCD01024435;XM_005385804 XP_005385861 MODEL 8812874 protein-coding Terf2ip TERF2 interacting protein ENCODES a protein that exhibits telomeric repeat DNA binding (ortholog); INVOLVED IN negative regulation of DNA recombination at telomere (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); protection from non-homologous end joining at telomere (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955484 1917902 1924482 - 102017021 AGCD01058073;GBDK01235374;XM_005403434 XP_005403491 MODEL 8716155 protein-coding LOC102010019 phospholipase A2, membrane associated-like NW_004955452 597005 599899 - 102010019 AGCD01043819;XM_005395284 XP_005395341 MODEL 8846743 protein-coding LOC102027628 olfactory receptor 8D2-like NW_004955412 25090768 25091718 + 102027628 AGCD01013134;XM_005378646 XP_005378703 MODEL 8952004 protein-coding Larp1 La ribonucleoprotein 1, translational regulator ENCODES a protein that exhibits eukaryotic initiation factor 4E binding (ortholog); mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to rapamycin (ortholog); mRNA stabilization (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955408 9002443 9080938 + 102004565 AGCD01008230;AGCD01008231;AGCD01008232;GBDF01306301;XM_013508665;XM_013508667;XM_013508668;XM_013508671;XM_013508674 XP_013364119;XP_013364121;XP_013364122;XP_013364125;XP_013364128 MODEL 8717372 pseudo LOC102015355 heat shock cognate 71 kDa protein pseudogene NW_004955444 12513405 12515314 - 102015355 AGCD01039075 MODEL 8849568 pseudo LOC102030056 vomeronasal type-1 receptor 4-like NW_004955465 13014685 13015520 + 102030056 AGCD01050578;XM_005399003 MODEL 10292098 ncrna LOC106148066 uncharacterized LOC106148066 NW_004955415 22228333 22229839 + 106148066 AGCD01016531;XR_001233200 MODEL 8990237 pseudo LOC102019588 40S ribosomal protein S16 pseudogene NW_004955469 3930223 3930657 - 102019588 AGCD01052310 MODEL 8877060 protein-coding Sptssa serine palmitoyltransferase small subunit A ENCODES a protein that exhibits serine C-palmitoyltransferase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); glycosphingolipid biosynthetic process (ortholog); intracellular protein localization (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 90A (ortholog); hereditary spastic paraplegia 90B (ortholog); FOUND IN cytoplasmic side of endoplasmic reticulum membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955409 26460208 26460854 + 102007411 AGCD01010186;GBCC01001541;GBDF01085842;XM_005376942 XP_005376999 MODEL 9011363 pseudo LOC102021386 serine/threonine-protein phosphatase 4 regulatory subunit 3B pseudogene NW_004955531 3483082 3485616 + 102021386 AGCD01070075;XM_005410142 MODEL 8807163 pseudo LOC102003433 heterogeneous nuclear ribonucleoprotein A1-like NW_004955469 9146985 9148365 + 102003433 AGCD01052493 MODEL 39133496 snrna U4 U4 spliceosomal RNA 10158189 ncrna LOC106146969 uncharacterized LOC106146969 NW_004955508 1708529 1833708 - 106146969 AGCD01065774;GBCE01109579;XR_001231656;XR_001231657;XR_001231658 MODEL 9068228 protein-coding Bicral BICRA like chromatin remodeling complex associated protein ASSOCIATED WITH autism spectrum disorder (ortholog); prostate cancer (ortholog); FOUND IN SWI/SNF complex (ortholog) NW_004955437 8841830 8896391 + 102024273 AGCD01034501;AGCD01034502;AGCD01034503;AGCD01034504;AGCD01034505;AGCD01034506;GBDI01047312;XM_005389724;XM_005389725 XP_005389781;XP_005389782 MODEL 9002713 protein-coding LOC102026963 olfactory receptor 6P1 NW_004955468 10413443 10414396 - 102026963 AGCD01052084;XM_005400154 XP_005400211 MODEL 10193877 ncrna LOC106146419 uncharacterized LOC106146419 NW_004955478 9735519 9738457 + 106146419 AGCD01056094;XR_001230840 MODEL 8799737 protein-coding Shisa6 shisa family member 6 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN excitatory chemical synaptic transmission (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); postsynaptic neurotransmitter receptor diffusion trapping (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); asymmetric, glutamatergic, excitatory synapse (ortholog); glutamatergic synapse (ortholog) NW_004955467 5701521 5998910 - 102004368 AGCD01051397;AGCD01051398;AGCD01051399;AGCD01051400;AGCD01051401;GBDF01307813;XM_005399742 XP_005399799 MODEL 8905193 pseudo LOC102018416 uncharacterized LOC102018416 NW_004955427 9744289 9780161 - 102018416 AGCD01027104;XR_261251 MODEL 9005419 protein-coding Pgk2 phosphoglycerate kinase 2 ENCODES a protein that exhibits phosphoglycerate kinase activity (ortholog); INVOLVED IN flagellated sperm motility (ortholog); glycolytic process (ortholog); FOUND IN cilium (ortholog); sperm fibrous sheath (ortholog) NW_004955411 8216432 8218065 + 102005682 AGCD01011720;GBDF01002336;XM_005377668 XP_005377725 MODEL 8709091 protein-coding LOC102006234 apolipoprotein L2-like NW_004955413 22477358 22499340 - 102006234 AGCD01014302;GBDK01079420;XM_005379648 XP_005379705 MODEL 10299668 ncrna LOC106150081 uncharacterized LOC106150081 NW_004955464 10897039 10908003 - 106150081 AGCD01050127;AGCD01050128;AGCD01050129;AGCD01050130;XR_001236674 MODEL 9027040 protein-coding Klk6 kallikrein related peptidase 6 ENCODES a protein that exhibits peptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN positive regulation of G protein-coupled receptor signaling pathway (ortholog); regulation of neuron projection development (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); breast carcinoma (ortholog); demyelinating disease (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955558 1501806 1509461 + 102024619 AGCD01073445;GBCB01093384;XM_005412725;XM_013508920 XP_005412782;XP_013364374 MODEL 8722933 ncrna LOC102021390 uncharacterized LOC102021390 NW_004955539 3561889 3568046 + 102021390 AGCD01071257;GBDI01058745;XR_264814 MODEL 8950715 protein-coding LOC102009234 prolactin-like NW_004955576 435369 491017 + 102009234 AGCD01075276;AGCD01075277;AGCD01075278;AGCD01075279;AGCD01075280;AGCD01075281;AGCD01075282;AGCD01075283;XM_005413946 XP_005414003 MODEL 10372403 ncrna LOC106149257 uncharacterized LOC106149257 NW_004955441 5462987 5471906 - 106149257 AGCD01036878;GBDJ01360263;XR_001235306;XR_001235307;XR_001235308 MODEL 8887043 ncrna LOC102008873 uncharacterized LOC102008873 NW_004955427 6400197 6403763 + 102008873 AGCD01027028;GBDF01126299;XR_261236 MODEL 10108877 ncrna LOC106146689 uncharacterized LOC106146689 NW_004955492 5029875 5043130 + 106146689 AGCD01060738;XR_001231244 MODEL 8932454 protein-coding Ndrg1 N-myc downstream regulated 1 ENCODES a protein that exhibits cadherin binding (ortholog); gamma-tubulin binding (ortholog); microtubule binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); mast cell activation (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 4 (ortholog); FOUND IN adherens junction (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955461 7787068 7836380 - 102016138 AGCD01048923;GBBH01061733;XM_005398027;XM_013521347 XP_005398084;XP_013376801 MODEL 8770272 pseudo LOC102007347 heterogeneous nuclear ribonucleoprotein A1-like 2 NW_004955494 2464464 2465407 + 102007347 AGCD01061438 MODEL 8858964 protein-coding Ifitm5 interferon induced transmembrane protein 5 INVOLVED IN bone mineralization (ortholog); bone morphogenesis (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH genetic disease (ortholog); osteogenesis imperfecta (ortholog); osteogenesis imperfecta type 5 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955476 11745585 11747006 + 102027177 AGCD01055474;GBCE01007175;XM_005401877 XP_005401934 MODEL 8732715 ncrna LOC102003115 uncharacterized LOC102003115 NW_004955470 2942258 2951897 + 102003115 AGCD01052684;AGCD01052685;AGCD01052686;GBDF01056049;XR_263459 MODEL 8961332 protein-coding Pik3cb phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-4,5-bisphosphate 3-kinase activity (ortholog); insulin receptor substrate binding (ortholog); INVOLVED IN angiogenesis involved in wound healing (ortholog); embryonic cleavage (ortholog); endothelial cell proliferation (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; FasL mediated signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH colorectal cancer (ortholog); diffuse large B-cell lymphoma (ortholog); endometrial cancer (ortholog); FOUND IN brush border membrane (ortholog); cytoplasm (ortholog); nucleolus (ortholog) NW_004955501 251829 381255 + 102015651 AGCD01064012;AGCD01064013;AGCD01064014;AGCD01064015;AGCD01064016;AGCD01064017;AGCD01064018;AGCD01064019;AGCD01064020;GBCQ01099651;XM_013505790 XP_013361244 MODEL 9061217 protein-coding Xiap X-linked inhibitor of apoptosis ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (ortholog); identical protein binding (ortholog); protease binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); defense response to bacterium (ortholog); DNA damage response (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; intrinsic apoptotic pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); breast cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955473 10823795 10878256 - 102029504 AGCD01054116;AGCD01054117;GBBH01094341;GBCE01183072;XM_013523059 XP_013378513 MODEL 8935168 protein-coding LOC102005904 uncharacterized LOC102005904 NW_004955409 26016614 26049251 + 102005904 AGCD01010148;AGCD01010149;AGCD01010150;GBDF01305671;XM_005376937 XP_005376994 MODEL 8818507 protein-coding LOC102029364 keratin-associated protein 24-1 NW_004955407 29623389 29624347 - 102029364 AGCD01007611;XM_005375625 XP_005375682 MODEL 8837617 ncrna LOC102020589 uncharacterized LOC102020589 NW_004955427 12073985 12091655 + 102020589 AGCD01027201;AGCD01027202;AGCD01027203;GBDF01275452;XR_261255 MODEL 9015513 protein-coding LOC102003117 olfactory receptor 51B6-like NW_004955414 21261870 21262817 + 102003117 AGCD01015411;XM_005380081 XP_005380138 MODEL 8949790 pseudo LOC102028276 60S ribosomal protein L6-like NW_004955462 5725847 5738531 + 102028276 AGCD01049262;AGCD01049263 MODEL 10287335 pseudo LOC106146289 putative gustatory receptor clone PTE01 NW_004955495 805147 807548 - 106146289 AGCD01061654 MODEL 9004444 protein-coding Tmprss4 transmembrane serine protease 4 ENCODES a protein that exhibits serine-type peptidase activity (ortholog); INVOLVED IN negative regulation of growth rate (ortholog); protein processing (ortholog); proteolysis (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Human Influenza (ortholog); FOUND IN extracellular region (ortholog); secretory granule (ortholog) NW_004955412 19258955 19292766 + 102004917 AGCD01012950;GBDJ01299656;XM_005378227 XP_005378284 MODEL 8741730 protein-coding Spata24 spermatogenesis associated 24 ENCODES a protein that exhibits DNA binding (ortholog); identical protein binding (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955418 1157089 1163897 + 102018929 AGCD01018711;GBDJ01131117;XM_005382072 XP_005382129 MODEL 8807441 protein-coding LOC102011983 cystatin-9-like NW_004955415 30490600 30492806 - 102011983 AGCD01016664;GBDF01134641;XM_013512168 XP_013367622 MODEL 8796263 protein-coding Sc5d sterol-C5-desaturase ENCODES a protein that exhibits C-5 sterol desaturase activity (ortholog); delta7-sterol 5(6)-desaturase activity (ortholog); sterol desaturase activity (ortholog); INVOLVED IN cholesterol biosynthetic process (ortholog); cholesterol biosynthetic process via desmosterol (ortholog); cholesterol biosynthetic process via lathosterol (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); Lathosterolosis (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955412 22274131 22288870 + 102014758 AGCD01013044;GBDK01146982;XM_005378360;XM_005378361;XM_005378362;XM_005378363 XP_005378417;XP_005378418;XP_005378419;XP_005378420 MODEL 9058587 protein-coding Pgls 6-phosphogluconolactonase ENCODES a protein that exhibits 6-phosphogluconolactonase activity (ortholog); monosaccharide binding (ortholog); INVOLVED IN pentose-phosphate shunt (ortholog); pentose-phosphate shunt, oxidative branch (ortholog); PARTICIPATES IN pentose phosphate pathway; pentose phosphate pathway - oxidative phase; ribose 5-phosphate isomerase deficiency pathway; ASSOCIATED WITH osteoporosis (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955524 797439 801070 - 102009981 AGCD01068709;GBDF01006033;XM_005409530;XR_001231947 XP_005409587 MODEL 8800190 protein-coding Erh ERH mRNA splicing and mitosis factor ENCODES a protein that exhibits methyl-CpG binding (ortholog); FOUND IN methylosome (ortholog); midbody (ortholog); nucleus (ortholog) NW_004955466 960245 976449 + 102027958 AGCD01050685;AGCD01050686;GBBH01031291;XM_005399034 XP_005399091 MODEL 8839738 protein-coding Pabir1 PP2A Aalpha (PPP2R1A) and B55A (PPP2R2A) interacting phosphatase regulator 1 ENCODES a protein that exhibits protein phosphatase 2A binding (ortholog); protein phosphatase inhibitor activity (ortholog); protein serine/threonine phosphatase inhibitor activity (ortholog); INVOLVED IN mitotic G2/M transition checkpoint (ortholog); positive regulation of cell growth (ortholog); positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955434 4250105 4251508 - 102007927 AGCD01032155;GBDF01128644;XM_005388575 XP_005388632 MODEL 8717395 protein-coding Larp1b La ribonucleoprotein 1B ASSOCIATED WITH prostate cancer (ortholog) NW_004955428 13319322 13427932 - 102015871 AGCD01027948;AGCD01027949;AGCD01027950;AGCD01027951;GBDK01309285;XM_013515251 XP_013370705 MODEL 10211829 protein-coding LOC106148067 uncharacterized LOC106148067 NW_004955415 32891489 32892096 + 106148067 AGCD01016739;GBCE01066103;XM_013512136 XP_013367590 MODEL 8886804 protein-coding LOC102025544 nuclear envelope pore membrane protein POM 121-like NW_004955408 49932 71189 - 102025544 AGCD01007907;GBDF01043085;GBDF01192206;XM_005375997 XP_005376054 MODEL 9012137 ncrna LOC102024113 uncharacterized LOC102024113 NW_004955418 18836977 18846965 - 102024113 AGCD01019183;GBDF01179969;XR_260571 MODEL 9011784 protein-coding Podn podocan ENCODES a protein that exhibits collagen binding (ortholog); INVOLVED IN negative regulation of cell migration (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog) NW_004955464 6070842 6084463 - 102013705 AGCD01050017;GBBH01062255;GBDK01075021;XM_013521746 XP_013377200 MODEL 39133369 snorna SNORD15 Small nucleolar RNA SNORD15 9016035 protein-coding Sptssb serine palmitoyltransferase small subunit B ENCODES a protein that exhibits serine C-palmitoyltransferase activity (ortholog); INVOLVED IN ceramide biosynthetic process (ortholog); endoplasmic reticulum organization (ortholog); sphingolipid biosynthetic process (ortholog); FOUND IN serine palmitoyltransferase complex (ortholog) NW_004955448 11756766 11791418 - 102008362 AGCD01041532;AGCD01041533;GBBH01051733;GBCQ01139807;XM_005393134 XP_005393191 MODEL 8725467 protein-coding LOC102012389 PRAME family member 6-like NW_004955618 32981 36268 - 102012389 AGCD01077283;AGCD01077284;XM_013510147 XP_013365601 MODEL 39133497 snrna U4 U4 spliceosomal RNA 10164894 protein-coding LOC106146970 collagen alpha-2(I) chain-like NW_004955509 4418478 4420626 + 106146970 AGCD01066064;XM_013506288 XP_013361742 MODEL 8797368 protein-coding LOC102003434 olfactory receptor 51M1-like NW_004955414 21278585 21279689 + 102003434 AGCD01015411;XM_013511772 XP_013367226 MODEL 8816385 pseudo LOC102004483 LYR motif-containing protein 2 pseudogene NW_004955483 1814352 1814618 + 102004483 AGCD01057654;XM_005403350 MODEL 10148075 ncrna LOC106146420 uncharacterized LOC106146420 NW_004955478 4833051 4839786 - 106146420 AGCD01055857;GBDF01041935;XR_001230841;XR_001230842 MODEL 10167903 ncrna LOC106146546 uncharacterized LOC106146546 NW_004955484 3074839 3076282 - 106146546 AGCD01058153;GBDF01220887;XR_001231034 MODEL 10254376 protein-coding Shisa7 shisa family member 7 ENCODES a protein that exhibits GABA receptor binding (ortholog); ionotropic glutamate receptor binding (ortholog); INVOLVED IN gamma-aminobutyric acid receptor clustering (ortholog); gamma-aminobutyric acid signaling pathway (ortholog); memory (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); asymmetric, glutamatergic, excitatory synapse (ortholog); glutamatergic synapse (ortholog) NW_004955567 840193 845093 + 106147486 AGCD01074438;AGCD01074439;GBDJ01371014;GBDJ01371016;XM_013509311 XP_013364765 MODEL 10258653 ncrna LOC106150082 uncharacterized LOC106150082 NW_004955464 12577313 12585933 - 106150082 AGCD01050208;AGCD01050209;GBBH01173946;XR_001236677 MODEL 8782936 pseudo LOC102015357 MOB-like protein phocein pseudogene NW_004955446 16623486 16624592 + 102015357 AGCD01040340 MODEL 8999253 protein-coding LOC102027630 histone H4 ENCODES a protein that exhibits structural constituent of chromatin (ortholog); INVOLVED IN negative regulation of megakaryocyte differentiation (ortholog); nucleosome assembly (ortholog); FOUND IN CENP-A containing nucleosome (ortholog); extracellular exosome (ortholog); nucleoplasm (ortholog) NW_004955413 11517229 11517609 - 102027630 AGCD01013964;GBDI01154113;XM_013511443 XP_013366897 MODEL 8796345 protein-coding LOC102018052 uncharacterized LOC102018052 NW_004955451 16436871 16438274 - 102018052 AGCD01043676;XM_013519142 XP_013374596 MODEL 8915753 protein-coding Klk7 kallikrein related peptidase 7 ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN antibacterial peptide biosynthetic process (ortholog); FOUND IN cornified envelope (ortholog); epidermal lamellar body (ortholog); extracellular region (ortholog) NW_004955558 1490884 1494843 + 102023854 AGCD01073445;GBBH01120172;XM_005412722 XP_005412779 MODEL 8828031 protein-coding LOC102009235 signal recognition particle 19 kDa protein NW_004955449 1420800 1421601 - 102009235 AGCD01041800;XM_005393194 XP_005393251 MODEL 10221242 protein-coding LOC106146290 dual specificity protein phosphatase 13 NW_004955437 16971763 16973440 + 106146290 AGCD01034724;GBDF01054563;XM_013516739 XP_013372193 MODEL 8807873 pseudo LOC102026591 volume-regulated anion channel subunit LRRC8D-like NW_004955735 21524 23450 + 102026591 AGCD01078234 MODEL 9060584 trna trnW(tca) tRNA-Trp MT 4942 5010 + 15822204 8710200 protein-coding LOC102025187 zinc finger protein 709-like NW_004955569 27899 63427 + 102025187 AGCD01074557;AGCD01074558;GBCE01006195;XM_005413488 XP_005413545 MODEL 8830319 ncrna LOC102026965 uncharacterized LOC102026965 NW_004955414 30725986 30734360 + 102026965 AGCD01015738;GBDF01065110;XR_260216 MODEL 8719443 pseudo LOC102018418 putative ATP-dependent RNA helicase Pl10 NW_004955427 10783970 10784631 + 102018418 AGCD01027157 MODEL 8871146 protein-coding Bid BH3 interacting domain death agonist ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN establishment of protein localization to membrane (ortholog); extrinsic apoptotic signaling pathway (ortholog); glial cell apoptotic process (ortholog); PARTICIPATES IN ceramide signaling pathway; FasL mediated signaling pathway; intrinsic apoptotic pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); bronchopulmonary dysplasia (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955454 5776656 5785500 - 102005665 AGCD01045187;AGCD01045188;GBCB01130016;GBDJ01272354;XM_013520182 XP_013375636 MODEL 8791092 ncrna LOC102010020 uncharacterized LOC102010020 NW_004955453 14159202 14163339 + 102010020 AGCD01044858;GBDF01249804;XR_001236190;XR_262732 MODEL 8964662 protein-coding LOC102006239 olfactory receptor 51J1-like NW_004955414 21313687 21314640 + 102006239 AGCD01015412;XM_005380495 XP_005380552 MODEL 8834435 protein-coding Slc29a3 solute carrier family 29 member 3 ENCODES a protein that exhibits cytidine transmembrane transporter activity (ortholog); guanine transmembrane transporter activity (ortholog); monoamine transmembrane transporter activity (ortholog); INVOLVED IN adenosine transport (ortholog); cytidine transport (ortholog); guanine transmembrane transport (ortholog); ASSOCIATED WITH acanthosis nigricans (ortholog); congenital heart disease (ortholog); Dysosteosclerosis (ortholog); FOUND IN Golgi apparatus (ortholog); late endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955437 20072915 20108342 - 102007937 AGCD01034869;AGCD01034870;GBDK01324076;XM_005390038;XM_005390039 XP_005390095;XP_005390096 MODEL 8708242 ncrna LOC102029368 uncharacterized LOC102029368 NW_004955408 3840809 3844015 + 102029368 AGCD01008079;GBDF01078381;XR_001232189 MODEL 39133498 snrna U4 U4 spliceosomal RNA 10102478 ncrna LOC106149258 uncharacterized LOC106149258 NW_004955441 5661258 5705462 - 106149258 AGCD01036882;XR_001235309 MODEL 10227820 protein-coding LOC106146547 uncharacterized protein KIAA1958-like NW_004955484 1903290 1912072 + 106146547 AGCD01058073;XM_013503851 XP_013359305 MODEL 9007545 protein-coding Ndrg2 NDRG family member 2 INVOLVED IN negative regulation of cytokine production (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); negative regulation of smooth muscle cell proliferation (ortholog); ASSOCIATED WITH cataract (ortholog); Colonic Neoplasms (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi apparatus (ortholog) NW_004955550 1771514 1778693 - 102030351 AGCD01072587;GBCC01012894;GBDI01017782;XM_013508572;XM_013508573 XP_013364026;XP_013364027 MODEL 10364987 protein-coding Scaf1 SR-related CTD associated factor 1 ENCODES a protein that exhibits protein domain specific binding (ortholog); RNA polymerase II C-terminal domain binding (ortholog); INVOLVED IN mRNA processing (ortholog); transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); end stage renal disease (ortholog) NW_004955559 1229479 1234563 - 106147437 AGCD01073637;GBCQ01037858;GBDK01019238;XM_013508979 XP_013364433 MODEL 8783939 ncrna LOC102023817 uncharacterized LOC102023817 NW_004955496 352751 356812 + 102023817 AGCD01062225;GBDF01225176;XR_264170 MODEL 8979146 protein-coding LOC102007351 melanoma-associated antigen 10-like NW_004955498 6985853 6996187 - 102007351 AGCD01063140;XM_005406439 XP_005406496 MODEL 8753643 protein-coding Ifnar1 interferon alpha and beta receptor subunit 1 ENCODES a protein that exhibits cytokine binding (ortholog); interferon receptor activity (ortholog); JAK pathway signal transduction adaptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (ortholog); cellular response to interferon-alpha (ortholog); cellular response to interferon-beta (ortholog); PARTICIPATES IN type I interferon signaling pathway; ASSOCIATED WITH bacterial pneumonia (ortholog); Cardiovirus Infections (ortholog); COVID-19 (ortholog); FOUND IN late endosome (ortholog); lysosome (ortholog); plasma membrane (ortholog) NW_004955407 32730973 32755404 + 102019983 AGCD01007680;GBDK01189202;XM_013504266;XM_013504267;XM_013504269 XP_013359720;XP_013359721;XP_013359723 MODEL 10139989 ncrna LOC106148068 uncharacterized LOC106148068 NW_004955415 15368776 15370224 - 106148068 AGCD01016341;GBDF01054989;XR_001233201 MODEL 8797503 protein-coding Eri1 exoribonuclease 1 ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); exoribonuclease II activity (ortholog); histone pre-mRNA stem-loop binding (ortholog); INVOLVED IN histone mRNA catabolic process (ortholog); maturation of 5.8S rRNA (ortholog); rRNA 3'-end processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH amenorrhea (ortholog); Developmental Disabilities (ortholog); Hoxha-Aliu syndrome (ortholog); FOUND IN cytoplasm (ortholog); histone pre-mRNA 3'end processing complex (ortholog); nucleolus (ortholog) NW_004955463 5074921 5104341 + 102006224 AGCD01049629;AGCD01049630;AGCD01049631;AGCD01049632;GBBH01198207;XM_013521560 XP_013377014 MODEL 8934962 protein-coding Xirp1 xin actin binding repeat containing 1 ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN actin filament organization (ortholog); cardiac muscle cell development (ortholog); intracellular protein localization (ortholog); ASSOCIATED WITH hypertrophic cardiomyopathy (ortholog); microcephaly (ortholog); Poisoning (ortholog); FOUND IN adherens junction (ortholog); fascia adherens (ortholog); focal adhesion (ortholog) NW_004955427 24778157 24787691 + 102024824 AGCD01027521;GBCB01007246;XM_005386558;XM_005386559;XM_005386560;XM_005386561 XP_005386615;XP_005386616;XP_005386617;XP_005386618 MODEL 8838530 protein-coding Tert telomerase reverse transcriptase ENCODES a protein that exhibits DNA binding (ortholog); DNA polymerase activity (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); DNA biosynthetic process (ortholog); DNA strand elongation (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); adrenocortical carcinoma (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955504 649248 669796 - 102020268 AGCD01064824;AGCD01064825;GBDI01054113;GBDI01187681;XM_013505898 XP_013361352 MODEL 9008923 protein-coding Pik3cd phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta INVOLVED IN B cell activation (ortholog); B cell homeostasis (ortholog); cell surface receptor signaling pathway (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; FasL mediated signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH Chlamydia pneumonia (ortholog); colorectal cancer (ortholog); cutaneous leishmaniasis (ortholog); FOUND IN cytosol (ortholog); phosphatidylinositol 3-kinase complex, class IA (ortholog) NW_004955486 3813923 3837563 - 102020126 AGCD01059038;AGCD01059039;GBBH01114424;XM_005404031;XM_013504160;XM_013504162;XM_013504163;XM_013504164 XP_005404088;XP_013359614;XP_013359616;XP_013359617;XP_013359618 MODEL 8855760 ncrna LOC102026592 uncharacterized LOC102026592 NW_004955403 33976863 33983641 + 102026592 AGCD01002469;GBDF01021120;XR_259226 MODEL 8859891 ncrna LOC102030057 uncharacterized LOC102030057 NW_004955467 387405 388901 + 102030057 AGCD01051219;GBDF01235131;XR_001236864 MODEL 8822820 pseudo LOC102020592 S-methyl-5'-thioadenosine phosphorylase pseudogene NW_004955506 689688 693004 + 102020592 AGCD01065234 MODEL 8944232 protein-coding Spty2d1 SPT2 chromatin protein domain containing 1 ENCODES a protein that exhibits DNA binding (ortholog); histone binding (ortholog); histone chaperone activity (ortholog); INVOLVED IN heterochromatin formation (ortholog); nucleosome assembly (ortholog); regulation of DNA-templated transcription (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955414 33255048 33272861 - 102024448 AGCD01015800;GBCE01167704;XM_005380424 XP_005380481 MODEL 10063029 protein-coding LOC106146690 collagen alpha-1(I) chain-like NW_004955402 10391283 10391780 - 106146690 AGCD01000268;GBBH01223857;XM_013504829 XP_013360283 MODEL 8930965 ncrna LOC102028277 uncharacterized LOC102028277 NW_004955410 32809344 32811437 + 102028277 AGCD01011351;GBDF01161857;XR_001232756;XR_259898 MODEL 9045982 pseudo LOC102011985 mitochondrial import inner membrane translocase subunit Tim8 B pseudogene NW_004955416 17979253 17979575 - 102011985 AGCD01017393 MODEL 8798018 ncrna LOC102027633 uncharacterized LOC102027633 NW_004955414 24978302 25056177 - 102027633 AGCD01015566;AGCD01015567;AGCD01015568;AGCD01015569;GBDF01013351;XR_001233119;XR_001233120;XR_001233121;XR_001233122;XR_001233123;XR_001233124;XR_001233125 MODEL 8826894 protein-coding Pglyrp1 peptidoglycan recognition protein 1 ENCODES a protein that exhibits Hsp70 protein binding (ortholog); molecular adaptor activity (ortholog); peptidoglycan binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); biological process involved in interaction with host (ortholog); defense response to Gram-positive bacterium (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); FOUND IN extracellular region (ortholog) NW_004955574 424046 427675 - 102024734 AGCD01075105;GBDK01185353;XM_005413825 XP_005413882 MODEL 8865035 protein-coding LOC102015362 HLA class I histocompatibility antigen, B-42 alpha chain-like NW_004955583 535928 554579 + 102015362 AGCD01075834;AGCD01075835;AGCD01075836;GBDK01001510;XM_005414306 XP_005414363 MODEL 8768711 ncrna LOC102024114 uncharacterized LOC102024114 NW_004955483 8673978 8681030 - 102024114 AGCD01057842;GBDF01306700;XR_001231015;XR_001231016;XR_263875 MODEL 8965215 ncrna LOC102005907 uncharacterized LOC102005907 NW_004955410 11624781 11626736 - 102005907 AGCD01010829;GBDF01087824;XR_259837 MODEL 8835571 protein-coding Larp4 La ribonucleoprotein 4 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); poly(A) binding (ortholog); INVOLVED IN positive regulation of translation (ortholog); post-transcriptional regulation of gene expression (ortholog); ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN cytoplasmic stress granule (ortholog); cytosol (ortholog); cytosolic small ribosomal subunit (ortholog) NW_004955547 930988 996877 + 102015987 AGCD01072197;AGCD01072198;AGCD01072199;AGCD01072200;GBDF01086402;XM_005411878;XM_005411880;XM_005411881;XM_005411882;XM_013508449;XM_013508450 XP_005411935;XP_005411937;XP_005411938;XP_005411939;XP_013363903;XP_013363904 MODEL 10390348 ncrna LOC106146292 uncharacterized LOC106146292 NW_004955406 10439211 10448020 + 106146292 AGCD01005861;GBDF01187202;XR_001230931 MODEL 8924825 trna trnY(gta) tRNA-Tyr MT 5259 5325 - 15822224 8954226 pseudo LOC102003435 olfactory receptor 2AG2-like NW_004955414 22564831 22565788 - 102003435 AGCD01015463 MODEL 10356255 pseudo LOC106146971 39S ribosomal protein L42, mitochondrial pseudogene NW_004955509 5475189 5475629 + 106146971 AGCD01066102 MODEL 8952184 ncrna LOC102012393 uncharacterized LOC102012393 NW_004955403 55119286 55129586 - 102012393 AGCD01003110;GBDF01159103;XR_001234447;XR_259276 MODEL 8781163 protein-coding LOC102003118 olfactory receptor 2AG1-like NW_004955414 22492961 22493908 - 102003118 AGCD01015459;XM_005380176 XP_005380233 MODEL 8795683 protein-coding Bik BCL2 interacting killer ENCODES a protein that exhibits BH domain binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN apoptotic mitochondrial changes (ortholog); male gonad development (ortholog); positive regulation of protein-containing complex assembly (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; ASSOCIATED WITH ataxia telangiectasia (ortholog); breast cancer (ortholog); colon cancer (ortholog); FOUND IN Bcl-2 family protein complex (ortholog); endomembrane system (ortholog); mitochondrial envelope (ortholog) NW_004955413 28277727 28294032 + 102015396 AGCD01014555;GBDK01226774;XM_005379433 XP_005379490 MODEL 8722856 protein-coding LOC102018423 vomeronasal type-1 receptor 90-like NW_004955429 12408891 12409616 + 102018423 AGCD01028715;XM_005387249 XP_005387306 MODEL 8841428 ncrna LOC102010025 uncharacterized LOC102010025 NW_004955407 17318652 17322814 + 102010025 AGCD01007247;GBDF01021440;XR_259568 MODEL 8773419 pseudo LOC102006241 40S ribosomal protein S27-like pseudogene NW_004955475 4541672 4542105 + 102006241 AGCD01054882 MODEL 8861736 protein-coding LOC102019591 olfactory receptor 52K1-like NW_004955414 19909126 19910145 - 102019591 AGCD01015341;XM_005380459 XP_005380516 MODEL 8886867 protein-coding Spata25 spermatogenesis associated 25 INVOLVED IN spermatogenesis (ortholog) NW_004955445 11408552 11409730 + 102026364 AGCD01039690;GBDF01005574;XM_005392403 XP_005392460 MODEL 8877882 protein-coding Tmprss5 transmembrane serine protease 5 ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); FOUND IN neuronal cell body (ortholog); plasma membrane (ortholog) NW_004955412 15319945 15333161 - 102009364 AGCD01012870;GBDF01234580;XM_013510950 XP_013366404 MODEL 8759306 protein-coding Pabir2 PABIR family member 2 NW_004955473 207755 231781 + 102023025 AGCD01053833;GBDF01187951;XM_013523076;XM_013523077;XM_013523078;XM_013523079;XM_013523080;XM_013523081;XM_013523082;XM_013523083;XM_013523084 XP_013378530;XP_013378531;XP_013378532;XP_013378533;XP_013378534;XP_013378535;XP_013378536;XP_013378537;XP_013378538 MODEL 10316775 ncrna LOC106149259 uncharacterized LOC106149259 NW_004955441 5527812 5549384 + 106149259 AGCD01036880;GBBH01149183;XR_001235310 MODEL 8800175 ncrna LOC102025545 uncharacterized LOC102025545 NW_004955457 2839151 2861522 - 102025545 AGCD01046751;AGCD01046752;GBDI01163425;XR_001236415;XR_001236416;XR_001236417;XR_001236418;XR_001236419;XR_001236420;XR_001236421;XR_001236422;XR_001236423;XR_001236424;XR_262921 MODEL 10149985 protein-coding LOC106146548 MARVEL domain-containing protein 3-like NW_004955484 4344132 4350511 + 106146548 AGCD01058210;XM_013503854 XP_013359308 MODEL 8786163 protein-coding Klk8 kallikrein related peptidase 8 ENCODES a protein that exhibits peptidase activity (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN keratinocyte proliferation (ortholog); memory (ortholog); neuron projection morphogenesis (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); serine protease inhibitor complex (ortholog) NW_004955558 1479383 1484209 + 102007283 AGCD01073444;GBDF01260584;XM_013508916 XP_013364370 MODEL 39133368 snorna SNORD15 Small nucleolar RNA SNORD15 9028386 protein-coding Ndrg3 NDRG family member 3 INVOLVED IN decidualization (ortholog); FOUND IN cytoplasm (ortholog) NW_004955422 24901975 24972033 + 102020350 AGCD01023238;AGCD01023239;GBDF01002354;XM_005384731;XM_005384732;XM_005384733;XM_013514021;XM_013514022 XP_005384788;XP_005384789;XP_005384790;XP_013369475;XP_013369476 MODEL 8817914 protein-coding Podnl1 podocan like 1 FOUND IN extracellular matrix (ortholog) NW_004955415 32683256 32688736 - 102007425 AGCD01016730;GBDI01215428;XM_005381073;XM_013512208;XM_013512209;XM_013512210;XM_013512211 XP_005381130;XP_013367662;XP_013367663;XP_013367664;XP_013367665 MODEL 8841427 pseudo LOC102008875 phosducin-like protein 3 pseudogene NW_004955427 21601337 21602111 + 102008875 AGCD01027451 MODEL 8742346 protein-coding Ifnar2 interferon alpha and beta receptor subunit 2 ENCODES a protein that exhibits cytokine binding (ortholog); protein kinase binding (ortholog); type I interferon binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cell surface receptor signaling pathway via JAK-STAT (ortholog); cellular response to interferon-beta (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hepatitis B (ortholog); immunodeficiency 45 (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog); signaling receptor complex (ortholog) NW_004955407 32601862 32637852 + 102018567 AGCD01007679;GBDI01354641;XM_005375676;XM_005375677;XM_013504240 XP_005375733;XP_005375734;XP_013359694 MODEL 10061116 ncrna LOC106146421 uncharacterized LOC106146421 NW_004955402 10883812 10891932 + 106146421 AGCD01000294;GBCB01130954;XR_001230845 MODEL 9063620 ncrna LOC102005908 uncharacterized LOC102005908 NW_004955410 34743414 34763395 - 102005908 AGCD01011404;GBDF01221838;XR_001232718 MODEL 8967925 protein-coding Eri2 ERI1 exoribonuclease family member 2 ASSOCIATED WITH COVID-19 (ortholog) NW_004955493 96758 103669 - 102029981 AGCD01060838;GBCC01027768;XM_005405034;XM_013504827 XP_005405091;XP_013360281 MODEL 39133499 snrna U4 U4 spliceosomal RNA 8703794 protein-coding Shisa8 shisa family member 8 NW_004955413 27328632 27330304 - 102012751 AGCD01014501;AGCD01014502;GBBH01127137;GBDI01328292;XM_013511364 XP_013366818 MODEL 8814103 ncrna LOC102030059 uncharacterized LOC102030059 NW_004955467 11193143 11199131 - 102030059 AGCD01051605;XR_263360 MODEL 8740818 pseudo LOC102003437 probable asparagine--tRNA ligase, mitochondrial pseudogene NW_004955414 18585477 18586305 + 102003437 AGCD01015285 MODEL 8906704 protein-coding Tro trophinin INVOLVED IN negative regulation of cell growth (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955475 2266522 2278016 + 102024454 AGCD01054800;GBDK01001381;XM_005401530;XM_013502848;XM_013502849;XM_013502850;XM_013502851;XM_013502852;XM_013502853 XP_005401587;XP_013358302;XP_013358303;XP_013358304;XP_013358305;XP_013358306;XP_013358307 MODEL 8802597 protein-coding LOC102029370 cytochrome P450 20A1 NW_004955457 11585851 11646764 - 102029370 AGCD01046974;AGCD01046975;AGCD01046976;AGCD01046977;GBCQ01098287;XM_005397043 XP_005397100 MODEL 8759513 ncrna LOC102028279 uncharacterized LOC102028279 NW_004955411 27964140 27970808 - 102028279 AGCD01012203;GBDF01144430;XR_259944 MODEL 8880585 pseudo LOC102010026 transmembrane protein 50A pseudogene NW_004955455 8395596 8396361 - 102010026 AGCD01045888 MODEL 9067132 ncrna LOC102021391 uncharacterized LOC102021391 NW_004955542 1478570 1495492 + 102021391 AGCD01071504;GBCE01185531;XR_001232169;XR_001232170;XR_264854;XR_264855 MODEL 8967120 pseudo LOC102027634 integral membrane protein GPR137 pseudogene NW_004955471 12337303 12340251 + 102027634 AGCD01053288 MODEL 8784710 ncrna LOC102026966 uncharacterized LOC102026966 NW_004955414 33724952 33727587 + 102026966 AGCD01015822;GBDF01252654;XR_260235 MODEL 8832931 protein-coding Scaf11 SR-related CTD associated factor 11 INVOLVED IN RNA splicing (ortholog); RNA splicing, via transesterification reactions (ortholog); spliceosomal complex assembly (ortholog); FOUND IN nuclear body (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955500 5187112 5229929 - 102010602 AGCD01063825;GBBH01092529;XM_005406594;XM_005406595;XM_013505704 XP_005406651;XP_005406652;XP_013361158 MODEL 8815129 pseudo LOC102015364 ornithine decarboxylase antizyme 1 pseudogene NW_004955402 7185465 7186381 + 102015364 AGCD01000167 MODEL 8939359 protein-coding LOC102004484 olfactory receptor 13D1 NW_004955419 21750870 21752319 - 102004484 AGCD01020283;GBDJ01341197;XM_005382786 XP_005382843 MODEL 8701979 ncrna LOC102025546 uncharacterized LOC102025546 NW_004955408 14226420 14232243 + 102025546 AGCD01008390;GBDF01084981;XR_259684 MODEL 9027720 protein-coding Xirp2 xin actin binding repeat containing 2 ENCODES a protein that exhibits actin filament binding (ortholog); alpha-actinin binding (ortholog); INVOLVED IN cardiac muscle tissue morphogenesis (ortholog); cell-cell junction organization (ortholog); positive regulation of protein localization (ortholog); ASSOCIATED WITH blepharophimosis (ortholog); Congenital Heart Defects, Multiple Types, 4 (ortholog); depressive disorder (ortholog); FOUND IN anchoring junction (ortholog); cell-cell junction (ortholog); focal adhesion (ortholog) NW_004955449 7054636 7131668 - 102008586 AGCD01041972;AGCD01041973;GBCB01003932;XM_013518803 XP_013374257 MODEL 8840427 protein-coding LOC102024116 olfactory receptor 50-like NW_004955419 5579409 5580775 - 102024116 AGCD01019825;XM_005382924;XM_013513121 XP_005382981;XP_013368575 MODEL 10213270 protein-coding LOC106146293 olfactory receptor 5B2-like NW_004955511 3249946 3253063 - 106146293 AGCD01066450;AGCD01066451;XM_013506401 XP_013361855 MODEL 9033806 protein-coding Tes testin LIM domain protein ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH breast cancer (ortholog); childhood acute lymphocytic leukemia (ortholog); colitis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); focal adhesion (ortholog) NW_004955432 21992708 22035441 + 102010400 AGCD01031245;AGCD01031246;GBCE01096721;XM_005388117;XM_005388118;XM_005388119 XP_005388174;XP_005388175;XP_005388176 MODEL 10241658 ncrna LOC106150083 uncharacterized LOC106150083 NW_004955464 10884038 10886740 + 106150083 AGCD01050127;XR_001236678 MODEL 8772336 pseudo LOC102018054 60S ribosomal protein L38 pseudogene NW_004955405 18308689 18309581 + 102018054 AGCD01005015 MODEL 10100038 protein-coding LOC106146691 vegetative cell wall protein gp1-like NW_004955492 112545 116430 - 106146691 AGCD01060628;GBDJ01306513;XM_013504670 XP_013360124 MODEL 8935282 ncrna LOC102009239 uncharacterized LOC102009239 NW_004955586 997656 1002493 + 102009239 AGCD01076049;GBDJ01242970;XR_265115 MODEL 8880768 protein-coding LOC102020594 acyl-CoA dehydrogenase family member 9, mitochondrial-like NW_004955429 18133117 18155062 + 102020594 AGCD01028881;GBBH01021101;XM_005387111;XM_013515559 XP_005387168;XP_013371013 MODEL 8929594 protein-coding Spx spexin hormone ENCODES a protein that exhibits neuropeptide hormone activity (ortholog); type 2 galanin receptor binding (ortholog); type 3 galanin receptor binding (ortholog); INVOLVED IN long-chain fatty acid import into cell (ortholog); negative regulation of appetite (ortholog); negative regulation of heart rate (ortholog); FOUND IN cytoplasm (ortholog); dense core granule (ortholog); extracellular region (ortholog) NW_004955413 17173215 17178388 + 102018073 AGCD01014131;GBDJ01257021;XM_005379061 XP_005379118 MODEL 9005465 protein-coding LOC102008878 olfactory receptor 5AN1-like NW_004955511 3869171 3870109 + 102008878 AGCD01066479;XM_005408266 XP_005408323 MODEL 8831291 pseudo LOC102007353 60S ribosomal protein L31 pseudogene NW_004955426 12943982 12944411 + 102007353 AGCD01026352 MODEL 8777516 protein-coding Bin1 bridging integrator 1 ENCODES a protein that exhibits actin filament binding (ortholog); aspartic-type endopeptidase inhibitor activity (ortholog); GTPase binding (ortholog); INVOLVED IN endosome to lysosome transport (ortholog); lipid tube assembly (ortholog); muscle cell differentiation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); autosomal dominant nonsyndromic deafness 22 (ortholog); autosomal recessive centronuclear myopathy (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); axon terminus (ortholog) NW_004955459 3376149 3423157 + 102006639 AGCD01048015;GBDI01010869;XM_005397618;XM_005397619;XM_005397620;XM_005397621;XM_005397622;XM_005397623;XM_005397624;XM_005397625;XM_005397626;XM_005397627;XM_005397628;XM_005397629;XM_005397630;XM_005397631;XM_005397632;XM_005397633;XM_005397634;XM_013521077 XP_005397675;XP_005397676;XP_005397677;XP_005397678;XP_005397679;XP_005397680;XP_005397681;XP_005397682;XP_005397683;XP_005397684;XP_005397685;XP_005397686;XP_005397687;XP_005397688;XP_005397689;XP_005397690;XP_005397691;XP_013376531 MODEL 8701934 pseudo LOC102025191 60S ribosomal protein L23a pseudogene NW_004955578 358817 360090 + 102025191 AGCD01075477 MODEL 8717136 protein-coding LOC102006243 calsyntenin-1 NW_004955479 9732376 9734653 + 102006243 AGCD01056494;GBCE01076233;GBDI01068209;XM_013503286 XP_013358740 MODEL 8818003 pseudo LOC102011989 F-actin-capping protein subunit alpha-1 pseudogene NW_004955481 9008939 9010077 - 102011989 AGCD01057092 MODEL 8874406 protein-coding Tmprss6 transmembrane serine protease 6 INVOLVED IN intracellular iron ion homeostasis (ortholog); membrane protein proteolysis (ortholog); multicellular organismal-level iron ion homeostasis (ortholog); ASSOCIATED WITH genetic disease (ortholog); iron deficiency anemia (ortholog); microcytic anemia (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog) NW_004955413 23579946 23615277 - 102008211 AGCD01014332;AGCD01014333;GBBH01155445;GBDK01356744;XM_013511592;XM_013511593 XP_013367046;XP_013367047 MODEL 10311712 ncrna LOC106146549 uncharacterized LOC106146549 NW_004955407 18096352 18121885 - 106146549 AGCD01007265;GBCE01110946;XR_001231035;XR_001231036;XR_001231037 MODEL 8870365 protein-coding Larp4b La ribonucleoprotein 4B ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); INVOLVED IN positive regulation of 3'-UTR-mediated mRNA stabilization (ortholog); positive regulation of translation (ortholog); ASSOCIATED WITH Familial Prostate Cancer (ortholog); myoepithelioma (ortholog); FOUND IN cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955492 113900 197753 + 102011324 AGCD01060628;GBCQ01150926;XM_005404909;XM_005404910;XM_005404912;XM_013504697;XM_013504698;XM_013504699 XP_005404966;XP_005404967;XP_005404969;XP_013360151;XP_013360152;XP_013360153 MODEL 9054750 protein-coding Slc29a4 solute carrier family 29 member 4 ENCODES a protein that exhibits efflux transmembrane transporter activity (ortholog); monoamine transmembrane transporter activity (ortholog); monoatomic cation transmembrane transporter activity (ortholog); INVOLVED IN adenosine transport (ortholog); cellular detoxification (ortholog); dopamine uptake (ortholog); PARTICIPATES IN metformin pharmacokinetics pathway; FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); plasma membrane (ortholog) NW_004955460 10155916 10181974 + 102029155 AGCD01048573;AGCD01048574;AGCD01048575;GBBH01180329;XM_005397838;XM_005397839;XM_013521136 XP_005397895;XP_005397896;XP_013376590 MODEL 8917398 protein-coding Podxl podocalyxin like INVOLVED IN cell migration (ortholog); epithelial tube formation (ortholog); leukocyte migration (ortholog); ASSOCIATED WITH carotid artery disease (ortholog); early-onset Parkinson's disease (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); cell body (ortholog); cytoplasm (ortholog) NW_004955410 36191797 36239970 + 102007635 AGCD01011422;GBBH01063522;GBCB01119929;XM_005377546 XP_005377603 MODEL 8895123 protein-coding Pik3cg phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit gamma ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-4,5-bisphosphate 3-kinase activity (ortholog); 1-phosphatidylinositol-4-phosphate 3-kinase activity (ortholog); INVOLVED IN behavioral response to pain (ortholog); cellular response to cAMP (ortholog); G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; insulin signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); Alzheimer's disease (ortholog); asthma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955410 11402476 11433335 + 102028939 AGCD01010824;GBDK01327812;XM_005377268;XM_005377269;XM_005377270;XM_013510652;XM_013510653 XP_005377325;XP_005377326;XP_005377327;XP_013366106;XP_013366107 MODEL 10364386 ncrna LOC106146972 uncharacterized LOC106146972 NW_004955509 3770384 3772861 + 106146972 AGCD01066033;GBCQ01015745;XR_001231660 MODEL 8757275 pseudo LOC102003119 ATP-binding cassette sub-family G member 2 pseudogene NW_004955470 8863858 8865469 + 102003119 AGCD01052834 MODEL 8921784 protein-coding Ndrg4 NDRG family member 4 INVOLVED IN cell migration involved in heart development (ortholog); negative regulation of platelet-derived growth factor receptor signaling pathway (ortholog); negative regulation of smooth muscle cell migration (ortholog); ASSOCIATED WITH glioblastoma (ortholog); hepatoblastoma (ortholog); high grade glioma (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell projection membrane (ortholog); cytoplasm (ortholog) NW_004955433 15914884 15933000 + 102012889 AGCD01031775;AGCD01031776;GBCQ01003722;XM_005388444;XM_005388445;XM_013516126 XP_005388501;XP_005388502;XP_013371580 MODEL 8703352 pseudo LOC102023819 melanoma-associated antigen 10-like NW_004955498 4467730 4468548 - 102023819 AGCD01063000 MODEL 9029606 pseudo LOC102019594 uncharacterized protein KIAA1143 pseudogene NW_004955475 12157531 12158860 + 102019594 AGCD01055183 MODEL 10361928 protein-coding LOC106148069 protocadherin gamma-A11-like NW_004955415 12353151 12356484 - 106148069 AGCD01016188;GBBH01036597;GBDI01164760;XM_013512161 XP_013367615 MODEL 8982017 protein-coding Shisa9 shisa family member 9 ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN regulation of AMPA receptor activity (ortholog); regulation of short-term neuronal synaptic plasticity (ortholog); FOUND IN AMPA glutamate receptor complex (ortholog); dendritic spine membrane (ortholog); glutamatergic synapse (ortholog) NW_004955442 5537372 5817076 - 102021804 AGCD01037566;AGCD01037567;AGCD01037568;AGCD01037569;AGCD01037570;GBDF01237808;XM_005391145;XM_005391146 XP_005391202;XP_005391203 MODEL 8735606 protein-coding Pglyrp2 peptidoglycan recognition protein 2 ENCODES a protein that exhibits molecular condensate scaffold activity (ortholog); N-acetylmuramoyl-L-alanine amidase activity (ortholog); peptidoglycan binding (ortholog); INVOLVED IN biological process involved in interaction with host (ortholog); defense response to Gram-positive bacterium (ortholog); detection of bacterium (ortholog) NW_004955495 7785398 7792158 + 102004616 AGCD01062164;GBDK01164575;XM_005406067 XP_005406124 MODEL 8939984 protein-coding LOC102029372 retinol dehydrogenase 16-like NW_004955458 4679686 4687337 + 102029372 AGCD01047428;AGCD01047429;AGCD01047430;GBCQ01008981;XM_013520792 XP_013376246 MODEL 8705612 protein-coding LOC102028284 olfactory receptor 145-like NW_004955412 25164135 25165092 - 102028284 AGCD01013138;XM_005378648 XP_005378705 MODEL 8808359 protein-coding Pabpc1 poly(A) binding protein cytoplasmic 1 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA binding (ortholog); poly(A) binding (ortholog); INVOLVED IN CRD-mediated mRNA stabilization (ortholog); negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (ortholog); negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay (ortholog); PARTICIPATES IN microRNA pathway; translation initiation pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); COVID-19 (ortholog); intellectual disability (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cell leading edge (ortholog); cytoplasm (ortholog) NW_004955417 15872906 15885246 - 102018829 AGCD01018245;GBBH01002998;GBDF01010623;XM_005381871 XP_005381928 MODEL 9027736 ncrna LOC102010035 uncharacterized LOC102010035 NW_004955460 30819 34048 + 102010035 AGCD01048329;GBDF01187342;XR_263021 MODEL 8878429 pseudo LOC102026593 phosphate carrier protein, mitochondrial pseudogene NW_004955403 44295712 44296535 - 102026593 AGCD01002799;XM_005373634 MODEL 8947975 protein-coding Ifnb1 interferon beta 1 ENCODES a protein that exhibits chloramphenicol O-acetyltransferase activity (ortholog); cytokine activity (ortholog); cytokine receptor binding (ortholog); INVOLVED IN adaptive immune response (ortholog); B cell activation involved in immune response (ortholog); B cell proliferation (ortholog); ASSOCIATED WITH amelanotic melanoma (ortholog); anus benign neoplasm (ortholog); Aortic Remodeling (ortholog); FOUND IN extracellular region (ortholog) NW_004955434 23301623 23302304 - 102004511 AGCD01032701;XM_005388742 XP_005388799 MODEL 8816416 ncrna LOC102005909 uncharacterized LOC102005909 NW_004955411 1623772 1628626 - 102005909 AGCD01011485;GBDF01224028;XR_001232783;XR_259911 MODEL 10177563 protein-coding LOC106146422 uncharacterized LOC106146422 NW_004955406 20236948 20240571 + 106146422 AGCD01006103;GBDJ01164580;XM_013503167 XP_013358621 MODEL 8812200 pseudo LOC102018424 interferon-related developmental regulator 1 pseudogene NW_004955431 7302705 7305140 - 102018424 AGCD01030084;XR_261460 MODEL 39133500 snrna U4 U4 spliceosomal RNA 8794174 protein-coding Eri3 ERI1 exoribonuclease family member 3 NW_004955464 13855581 13984598 + 102017107 AGCD01050294;AGCD01050295;AGCD01050296;AGCD01050297;AGCD01050298;GBBH01114559;XM_005398762;XM_005398764;XM_013521692;XM_013521693;XM_013521694;XM_013521696;XM_013521697 XP_005398819;XP_005398821;XP_013377146;XP_013377147;XP_013377148;XP_013377150;XP_013377151 MODEL 8905403 protein-coding Tesc tescalcin ENCODES a protein that exhibits calcium ion binding (ortholog); magnesium ion binding (ortholog); phosphatase inhibitor activity (ortholog); INVOLVED IN cellular response to retinoic acid (ortholog); male gonad development (ortholog); megakaryocyte development (ortholog); FOUND IN cation-transporting ATPase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955455 14053918 14092637 + 102023114 AGCD01046082;GBBH01033835;XM_005396547;XM_005396548 XP_005396604;XP_005396605 MODEL 8773039 pseudo LOC102009242 nucleolar and spindle-associated protein 1 pseudogene NW_004955402 63057108 63065990 + 102009242 AGCD01001653 MODEL 10315943 ncrna LOC106149260 uncharacterized LOC106149260 NW_004955441 5829499 5839370 - 106149260 AGCD01036888;XR_001235311 MODEL 39132053 snorna SNORD16 Small nucleolar RNA SNORD16 8804296 protein-coding Troap trophinin associated protein ASSOCIATED WITH COVID-19 (ortholog); hepatocellular carcinoma (ortholog) NW_004955500 8129031 8137235 + 102016493 AGCD01063981;GBDF01084874;XM_005406696;XM_005406697;XM_005406698;XM_005406699 XP_005406753;XP_005406754;XP_005406755;XP_005406756 MODEL 39133501 snrna U4 U4 spliceosomal RNA 8985823 pseudo LOC102023821 cytoskeleton-associated protein 2-like pseudogene NW_004955426 24937221 24939393 + 102023821 AGCD01026698 MODEL 8711873 ncrna LOC102006247 uncharacterized LOC102006247 NW_004955418 22849622 22877924 - 102006247 AGCD01019292;GBDF01144012;XR_260583 MODEL 8730818 protein-coding LOC102011991 olfactory receptor 5V1-like NW_004955418 30227847 30228797 + 102011991 AGCD01019507;XM_005382370 XP_005382427 MODEL 8766947 protein-coding LOC102012401 myotubularin-related protein 3-like NW_004955455 4250135 4256614 - 102012401 AGCD01045673;GBDK01132871;XM_005396226;XM_005396227 XP_005396283;XP_005396284 MODEL 9004183 pseudo LOC102024122 casein kinase I isoform alpha pseudogene NW_004955421 547617 566169 + 102024122 AGCD01021566 MODEL 8992151 ncrna LOC102028285 uncharacterized LOC102028285 NW_004955413 1838163 1855323 + 102028285 AGCD01013530;GBDK01225627;XR_260048 MODEL 8836229 protein-coding Xk X-linked Kx blood group antigen, Kell and VPS13A binding protein ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN intracellular calcium ion homeostasis (ortholog); intracellular magnesium ion homeostasis (ortholog); myelination (ortholog); ASSOCIATED WITH disease of mental health (ortholog); genetic disease (ortholog); hematopoietic system disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955587 668871 725829 + 102011713 AGCD01076069;GBCB01097779;XM_005414450 XP_005414507 MODEL 10276430 ncrna LOC106150084 uncharacterized LOC106150084 NW_004955464 3065871 3081167 + 106150084 AGCD01049970;GBCB01073547;XR_001236680 MODEL 8795266 pseudo LOC102030061 mitochondrial calcium uniporter regulator 1 pseudogene NW_004955413 11326516 11338715 + 102030061 AGCD01013957 MODEL 8948617 protein-coding Ifne interferon epsilon INVOLVED IN defense response to bacterium (ortholog); defense response to virus (ortholog); natural killer cell activation (ortholog) NW_004955472 12795352 12801035 - 102006570 AGCD01053817;XM_005401170 XP_005401227 MODEL 8851310 ncrna LOC102003439 uncharacterized LOC102003439 NW_004955415 12033874 12040445 - 102003439 AGCD01016183;GBDF01015290;XR_001233199 MODEL 10233277 pseudo LOC106146692 UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2-like NW_004955492 8780454 8801495 - 106146692 AGCD01060826;AGCD01060827;AGCD01060828;AGCD01060829;AGCD01060830 MODEL 8947230 protein-coding LOC102020595 olfactory receptor 1044 NW_004955511 1517014 1517973 + 102020595 AGCD01066370;XM_005408233 XP_005408290 MODEL 10163407 pseudo LOC106146974 uncharacterized LOC106146974 NW_004955510 4020198 4022900 - 106146974 AGCD01066254 MODEL 8922743 protein-coding LOC102003121 zinc finger protein 93-like NW_004955474 95780 107152 + 102003121 AGCD01054200;AGCD01054201;GBCE01168727;XM_005401299;XM_013502775;XM_013502776 XP_005401356;XP_013358229;XP_013358230 MODEL 8825830 protein-coding Ndst1 N-deacetylase and N-sulfotransferase 1 ENCODES a protein that exhibits deacetylase activity (ortholog); heparan sulfate N-deacetylase activity (ortholog); heparan sulfate N-sulfotransferase activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); aorta development (ortholog); cardiac septum development (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 46 (ortholog); complex cortical dysplasia with other brain malformations (ortholog); congenital diaphragmatic hernia (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); trans-Golgi network membrane (ortholog) NW_004955415 4017142 4078927 - 102014771 AGCD01015963;AGCD01015964;GBCB01057787;GBDK01000782;XM_013512250;XM_013512251 XP_013367704;XP_013367705 MODEL 8811918 pseudo LOC102008879 protein kinase C iota type pseudogene NW_004955430 16780162 16781452 + 102008879 AGCD01029645 MODEL 8985945 ncrna LOC102027640 uncharacterized LOC102027640 NW_004955417 20938383 20988002 - 102027640 AGCD01018388;GBDI01368402;XR_001233472;XR_260486 MODEL 8969750 ncrna LOC102025192 uncharacterized LOC102025192 NW_004955402 9308678 9320535 + 102025192 AGCD01000213;GBDF01192767;XR_259045 MODEL 8778449 protein-coding LOC102015366 spermatid-specific linker histone H1-like protein NW_004955451 11494164 11495023 + 102015366 AGCD01043355;GBDF01003862;XM_005394178 XP_005394235 MODEL 8740316 pseudo LOC102004485 40S ribosomal protein S14 pseudogene NW_004955484 6819345 6824612 + 102004485 AGCD01058294 MODEL 9034209 pseudo LOC102025547 post-GPI attachment to proteins factor 2 pseudogene NW_004955457 6262199 6264452 + 102025547 AGCD01046836 MODEL 8954454 protein-coding Scaf4 SR-related CTD associated factor 4 ENCODES a protein that exhibits RNA binding (ortholog); RNA polymerase II C-terminal domain phosphoserine binding (ortholog); INVOLVED IN mRNA processing (ortholog); negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled (ortholog); ASSOCIATED WITH congenital anomalies of kidney and urinary tract (ortholog); developmental and epileptic encephalopathy 11 (ortholog); Fliedner-Zweier syndrome (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 31269673 31303823 - 102014011 AGCD01007645;GBCE01044750;GBDK01185429;XM_013504099 XP_013359553 MODEL 8792967 protein-coding LOC102006248 olfactory receptor 1B1 NW_004955419 5318963 5319916 - 102006248 AGCD01019801;XM_005382524 XP_005382581 MODEL 8893338 protein-coding Tmprss7 transmembrane serine protease 7 ENCODES a protein that exhibits serine-type peptidase activity (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN plasma membrane (ortholog) NW_004955427 12447058 12483454 + 102024822 AGCD01027214;AGCD01027215;GBDF01184266;XM_005386381 XP_005386438 MODEL 8973144 protein-coding Pabpc1l poly(A) binding protein cytoplasmic 1 like ENCODES a protein that exhibits poly(A) binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); cytosolic mRNA polyadenylation (ortholog); nucleus localization (ortholog); ASSOCIATED WITH Oocyte Maturation Defect 1 (ortholog); Oocyte/Zygote/Embryo Maturation Arrest 22 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955445 12425738 12450830 - 102014093 AGCD01039751;GBDJ01299473;XM_005392456;XM_005392459;XM_005392460;XM_005392461;XM_013518323;XR_001235612 XP_005392513;XP_005392516;XP_005392517;XP_005392518;XP_013373777 MODEL 8844075 protein-coding Spata2l spermatogenesis associated 2 like ASSOCIATED WITH Fanconi anemia (ortholog) NW_004955541 3242380 3246562 - 102015892 AGCD01071440;GBDF01146693;XM_005411058 XP_005411115 MODEL 8748222 protein-coding Larp6 La ribonucleoprotein 6, translational regulator ENCODES a protein that exhibits mRNA 5'-UTR binding (ortholog); myosin binding (ortholog); RNA stem-loop binding (ortholog); INVOLVED IN positive regulation of collagen biosynthetic process (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955450 6050260 6073388 + 102010435 AGCD01042518;GBDJ01313471;XM_005393640;XM_005393641 XP_005393697;XP_005393698 MODEL 8734881 protein-coding Pik3ip1 phosphoinositide-3-kinase interacting protein 1 ENCODES a protein that exhibits phosphatidylinositol 3-kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH diastolic heart failure (ortholog) NW_004955455 5474569 5488420 - 102006211 AGCD01045727;AGCD01045728;AGCD01045729;GBBH01142408;GBDJ01181146;XM_013520330 XP_013375784 MODEL 8969955 pseudo LOC102005910 nicotinamide phosphoribosyltransferase-like NW_004955463 5062434 5074910 - 102005910 AGCD01049628;AGCD01049629 MODEL 8931334 protein-coding Podxl2 podocalyxin like 2 INVOLVED IN leukocyte tethering or rolling (ortholog) NW_004955429 15968877 15995617 - 102028778 AGCD01028824;GBCE01187822;XM_013515485 XP_013370939 MODEL 8983139 protein-coding Spz1 spermatogenic leucine zipper 1 ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); E-box binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Stomach Neoplasms (ortholog); FOUND IN nucleus (ortholog) NW_004955418 29458836 29460519 - 102017018 AGCD01019464;GBDF01007142;XM_005382324 XP_005382381 MODEL 8896711 pseudo LOC102021392 ADP-ribosylation factor-like protein 6-interacting protein 6 pseudogene NW_004955543 1498723 1499331 - 102021392 AGCD01071623 MODEL 10360989 ncrna LOC106149261 uncharacterized LOC106149261 NW_004955441 13884810 13886761 - 106149261 AGCD01037163;XR_001235316 MODEL 39132284 snorna SNORD17 small nucleolar RNA, C/D box 17 8949014 protein-coding Shisal1 shisa like 1 NW_004955413 29084441 29185524 - 102023138 AGCD01014576;AGCD01014577;AGCD01014578;GBCQ01175065;XM_005379460;XM_005379461;XM_005379462;XM_005379463 XP_005379517;XP_005379518;XP_005379519;XP_005379520 MODEL 10178212 ncrna LOC106146550 uncharacterized LOC106146550 NW_004955484 2023585 2029123 - 106146550 AGCD01058079;GBDF01151464;XR_001231038 MODEL 10299360 protein-coding LOC106146294 myosin-3-like NW_004955460 14953536 14962606 + 106146294 AGCD01048765;AGCD01048766;AGCD01048767;XM_013521226 XP_013376680 MODEL 8812331 pseudo LOC102023823 60S ribosomal protein L6-like NW_004955505 3444579 3445461 + 102023823 AGCD01065025 MODEL 8901826 ncrna LOC102010037 uncharacterized LOC102010037 NW_004955460 11260440 11300237 + 102010037 AGCD01048631;GBDF01076385;XR_001236536;XR_263060 MODEL 8777297 ncrna LOC102026594 uncharacterized LOC102026594 NW_004955403 52798612 52809041 + 102026594 AGCD01003018;GBDK01278081;XR_001234117;XR_259264 MODEL 8746242 protein-coding Ndst2 N-deacetylase and N-sulfotransferase 2 ENCODES a protein that exhibits deacetylase activity (ortholog); heparan sulfate N-deacetylase activity (ortholog); heparan sulfate N-sulfotransferase activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process (ortholog); mast cell mediated immunity (ortholog); regulation of angiotensin levels in blood (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955437 18090198 18099328 + 102011044 AGCD01034774;GBDI01221071;XM_005389955;XM_013516749 XP_005390012;XP_013372203 MODEL 8862927 ncrna LOC102004486 uncharacterized LOC102004486 NW_004955485 7084159 7094302 - 102004486 AGCD01058634;GBBH01225878;XR_001231087;XR_001231088;XR_263915 MODEL 8719421 protein-coding Slc2a1 solute carrier family 2 member 1 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); dehydroascorbic acid transmembrane transporter activity (ortholog); fucose transmembrane transporter activity (ortholog); INVOLVED IN cellular hyperosmotic response (ortholog); cellular response to glucose starvation (ortholog); cellular response to mechanical stimulus (ortholog); PARTICIPATES IN facilitative sugar transporter mediated glucose transport pathway; Glut1 deficiency syndrome pathway; hypoxia inducible factor pathway; ASSOCIATED WITH alcohol dependence (ortholog); Alcohol-Related Disorders (ortholog); Alzheimer's disease (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); caveola (ortholog) NW_004955537 2408042 2438788 - 102017914 AGCD01070929;AGCD01070930;GBCQ01066583;XM_005410625 XP_005410682 MODEL 8995111 pseudo LOC102018426 coiled-coil domain-containing protein 152-like NW_004955432 5609953 5610904 + 102018426 AGCD01030791 MODEL 10252576 ncrna LOC106146423 uncharacterized LOC106146423 NW_004955478 10933478 10949044 + 106146423 AGCD01056153;XR_001230843 MODEL 9039280 protein-coding Klk9 kallikrein related peptidase 9 NW_004955558 1472423 1478767 + 102023535 AGCD01073444;GBDJ01102216;XM_005412721;XM_013508917 XP_005412778;XP_013364371 MODEL 8816785 ncrna LOC102019600 uncharacterized LOC102019600 NW_004955484 5180341 5313392 - 102019600 AGCD01058248;AGCD01058249;AGCD01058250;AGCD01058251;AGCD01058252;GBDF01193757;XR_263887;XR_263888 MODEL 8931245 protein-coding Bin2 bridging integrator 2 ENCODES a protein that exhibits phospholipid binding (ortholog); INVOLVED IN cell chemotaxis (ortholog); phagocytosis, engulfment (ortholog); plasma membrane tubulation (ortholog); FOUND IN cytoplasm (ortholog); phagocytic cup (ortholog); plasma membrane (ortholog) NW_004955547 1774330 1798031 - 102016523 AGCD01072246;GBDF01006942;GBDK01146360;XM_013508468 XP_013363922 MODEL 8700833 protein-coding LOC102028286 olfactory receptor 6K3-like NW_004955468 10597680 10598627 - 102028286 AGCD01052090;XM_005400158 XP_005400215 MODEL 9066439 pseudo LOC102026971 ZZ-type zinc finger-containing protein 3 pseudogene NW_004955415 6097467 6098636 - 102026971 AGCD01016012 MODEL 8859237 protein-coding LOC102009244 high mobility group protein B1-like NW_004957564 9 553 + 102009244 AGCD01080960;XM_005415232 XP_005415289 MODEL 8750864 protein-coding LOC102030062 olfactory receptor 2AG2-like NW_004955414 22508853 22514085 + 102030062 AGCD01015460;GBDF01040616;XM_005380173;XM_005380174;XM_013512081 XP_005380230;XP_005380231;XP_013367535 MODEL 8702549 ncrna LOC102020599 uncharacterized LOC102020599 NW_004955515 3783964 3807130 - 102020599 AGCD01067303;AGCD01067304;AGCD01067305;GBDF01304550;XR_264524 MODEL 8904416 ncrna LOC102003126 uncharacterized LOC102003126 NW_004955478 4555513 4561148 + 102003126 AGCD01055852;GBDF01157448;XR_001230854;XR_001230855 MODEL 10220336 pseudo LOC106146975 dolichol-phosphate mannosyltransferase subunit 3-like NW_004955510 5980357 5980701 - 106146975 AGCD01066298 MODEL 8764998 protein-coding Tesk1 testis associated actin remodelling kinase 1 ENCODES a protein that exhibits protein kinase activity (ortholog); protein kinase binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN establishment of vesicle localization (ortholog); negative regulation of cilium assembly (ortholog); nuclear-transcribed mRNA catabolic process, no-go decay (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955472 670847 676060 - 102011651 AGCD01053346;AGCD01053347;GBBH01115775;GBCB01003173;XM_005401181 XP_005401238 MODEL 8974525 ncrna LOC102029374 uncharacterized LOC102029374 NW_004955460 14230143 14274449 + 102029374 AGCD01048742;AGCD01048743;AGCD01048744;AGCD01048745;GBDI01038281;XR_001236515;XR_001236516;XR_001236517;XR_263067 MODEL 8756518 protein-coding Pof1b POF1B actin binding protein ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); bicellular tight junction assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); primary ovarian insufficiency (ortholog); primary ovarian insufficiency 2B (ortholog); FOUND IN actin filament (ortholog); adherens junction (ortholog); bicellular tight junction (ortholog) NW_004955529 4137746 4224542 - 102024377 AGCD01069818;AGCD01069819;AGCD01069820;GBCC01000347;XM_005410090;XM_013507535;XM_013507536 XP_005410147;XP_013362989;XP_013362990 MODEL 8777344 protein-coding Sqle squalene epoxidase ENCODES a protein that exhibits FAD binding (ortholog); squalene monooxygenase activity (ortholog); INVOLVED IN cholesterol biosynthetic process (ortholog); cholesterol biosynthetic process via desmosterol (ortholog); cholesterol biosynthetic process via lathosterol (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH cholelithiasis (ortholog); Experimental Liver Neoplasms (ortholog); Hypercholesterolemia (ortholog); FOUND IN cytoplasmic side of endoplasmic reticulum membrane (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955461 121886 143389 + 102028063 AGCD01048791;GBDF01002848;XM_005397981 XP_005398038 MODEL 8877772 protein-coding Pglyrp4 peptidoglycan recognition protein 4 ENCODES a protein that exhibits peptidoglycan binding (ortholog); peptidoglycan immune receptor activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); biological process involved in interaction with host (ortholog); defense response to Gram-positive bacterium (ortholog); FOUND IN protein-containing complex (ortholog) NW_004955592 100022 111609 + 102006519 AGCD01076300;GBDI01104792;XM_005414604;XM_013509967;XM_013509968;XM_013509969;XM_013509970;XM_013509971;XM_013509972;XM_013509973;XM_013509974 XP_005414661;XP_013365421;XP_013365422;XP_013365423;XP_013365424;XP_013365425;XP_013365426;XP_013365427;XP_013365428 MODEL 8878591 pseudo LOC102008880 10 kDa heat shock protein, mitochondrial pseudogene NW_004955512 3112785 3135884 - 102008880 AGCD01066696 MODEL 9053819 protein-coding Trpa1 transient receptor potential cation channel subfamily A member 1 ENCODES a protein that exhibits calcium channel activity (ortholog); channel activity (ortholog); identical protein binding (ortholog); INVOLVED IN calcium ion transmembrane import into cytosol (ortholog); calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); ASSOCIATED WITH Abdominal Pain (ortholog); Acute Lung Injury (ortholog); allergic asthma (ortholog); FOUND IN apical plasma membrane (ortholog); axon (ortholog); plasma membrane (ortholog) NW_004955444 7876284 7922010 + 102027018 AGCD01038922;GBCQ01156908;XM_005392098 XP_005392155 MODEL 8916772 pseudo LOC102018056 deoxycytidine kinase pseudogene NW_004955452 6316449 6326634 - 102018056 AGCD01044102;AGCD01044103;AGCD01044104;AGCD01044105 MODEL 8958546 protein-coding LOC102012404 olfactory receptor 6C74-like NW_004955458 2414762 2415699 - 102012404 AGCD01047233;XM_013520846 XP_013376300 MODEL 8864885 ncrna LOC102011996 uncharacterized LOC102011996 NW_004955421 24720574 24725193 + 102011996 AGCD01022221;GBDI01347519;XR_260825 MODEL 8873602 protein-coding LOC102007356 olfactory receptor 13G1-like NW_004955507 6477447 6478391 - 102007356 AGCD01065718;XM_005407724 XP_005407781 MODEL 9021535 protein-coding Erich1 glutamate rich 1 NW_004955403 58508113 58580682 + 102024638 AGCD01003183;AGCD01003184;AGCD01003185;AGCD01003186;GBCQ01178907;GBDJ01117475;XM_013515049 XP_013370503 MODEL 8785989 protein-coding Pabpc4 poly(A) binding protein cytoplasmic 4 ENCODES a protein that exhibits mRNA binding (ortholog); poly(A) binding (ortholog); poly(C) RNA binding (ortholog); INVOLVED IN myeloid cell development (ortholog); regulation of mRNA stability (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955452 17083679 17101436 - 102023324 AGCD01044542;AGCD01044543;GBCB01005127;GBDK01091488;XM_005395243;XM_005395245 XP_005395300;XP_005395302 MODEL 8982872 protein-coding Xkr4 XK related 4 ENCODES a protein that exhibits phospholipid scramblase activity (ortholog); INVOLVED IN phosphatidylserine exposure on apoptotic cell surface (ortholog); ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN plasma membrane (ortholog) NW_004955454 14311466 14704334 + 102006978 AGCD01045469;AGCD01045470;AGCD01045471;AGCD01045472;AGCD01045473;AGCD01045474;AGCD01045475;AGCD01045476;GBBH01053233;XM_005396125 XP_005396182 MODEL 10362245 ncrna LOC106146693 uncharacterized LOC106146693 NW_004955492 8289775 8293716 + 106146693 AGCD01060810;XR_001231245 MODEL 8781804 protein-coding Ifng interferon gamma ENCODES a protein that exhibits cytokine activity (ortholog); INVOLVED IN adaptive immune response (ortholog); antigen processing and presentation (ortholog); apoptotic process (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-2 signaling pathway; interleukin-23 signaling pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); acquired immunodeficiency syndrome (ortholog); acute disseminated encephalomyelitis (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular region (ortholog); perikaryon (ortholog) NW_004955458 14643333 14648020 - 102028383 AGCD01047841;GBDJ01404961;XM_005397466 XP_005397523 MODEL 8899282 protein-coding Larp7 La ribonucleoprotein 7, transcriptional regulator ENCODES a protein that exhibits 7SK snRNA binding (ortholog); U6 snRNA binding (ortholog); INVOLVED IN box C/D sno(s)RNA 3'-end processing (ortholog); germ cell proliferation (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Alazami Syndrome (ortholog); Alazami-Yuan Syndrome (ortholog); generalized epilepsy (ortholog); FOUND IN 7SK snRNP (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955457 14178674 14200164 - 102019245 AGCD01047061;AGCD01047062;GBCQ01067465;XM_005397097;XM_005397098 XP_005397154;XP_005397155 MODEL 39133502 snrna U4 U4 spliceosomal RNA 8925147 pseudo LOC102021393 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like NW_004955439 7425526 7524935 - 102021393 AGCD01035768;AGCD01035769;AGCD01035770;AGCD01035771;AGCD01035772 MODEL 8716314 protein-coding Klkb1 kallikrein B1 INVOLVED IN blood coagulation, intrinsic pathway (ortholog); liver regeneration (ortholog); plasminogen activation (ortholog); PARTICIPATES IN acenocoumarol pharmacodynamics pathway; alteplase pharmacodynamics pathway; aminocaproic acid pharmacodynamics pathway; ASSOCIATED WITH carotid artery thrombosis (ortholog); Diabetic Nephropathies (ortholog); Enterocolitis (ortholog); FOUND IN extracellular region (ortholog) NW_004955403 22835544 22856355 - 102017618 AGCD01002231;GBDK01227470;XM_005373431 XP_005373488 MODEL 9041590 protein-coding LOC102005911 gamma-aminobutyric acid receptor subunit rho-2 NW_004955411 16026663 16070295 - 102005911 AGCD01011964;GBDK01413093;XM_005377748 XP_005377805 MODEL 8919289 protein-coding LOC102025195 vomeronasal type-1 receptor 4-like NW_004955584 426988 427899 - 102025195 AGCD01075941;XM_005414411 XP_005414468 MODEL 9015931 protein-coding LOC102027643 oocyte-specific histone RNA stem-loop-binding protein 2-like NW_004955418 2115451 2125827 - 102027643 AGCD01018741;GBDF01040030;XM_005382104;XM_005382106;XM_005382110;XM_013513030;XM_013513032;XM_013513033 XP_005382161;XP_005382163;XP_005382167;XP_013368484;XP_013368486;XP_013368487 MODEL 8766676 ncrna LOC102025549 uncharacterized LOC102025549 NW_004955458 1063542 1074198 - 102025549 AGCD01047167;AGCD01047168;GBDF01112035;XR_262958 MODEL 10248241 ncrna LOC106146551 uncharacterized LOC106146551 NW_004955407 18143026 18143765 - 106146551 AGCD01007266;XR_001231039 MODEL 8708805 ncrna LOC102024125 uncharacterized LOC102024125 NW_004955422 26926363 26963457 - 102024125 AGCD01023305;AGCD01023306;AGCD01023307;GBDF01036002;XR_260925 MODEL 8711726 pseudo LOC102023825 thyroid hormone receptor-associated protein 3 pseudogene NW_004955506 3169804 3172644 + 102023825 AGCD01065313 MODEL 10393531 ncrna LOC106150085 uncharacterized LOC106150085 NW_004955464 3081169 3083506 + 106150085 AGCD01049970;GBDF01305404;XR_001236681 MODEL 8909883 protein-coding Scaf8 SR-related CTD associated factor 8 ENCODES a protein that exhibits protein domain specific binding (ortholog); RNA binding (ortholog); RNA polymerase binding (ortholog); INVOLVED IN mRNA processing (ortholog); negative regulation of termination of RNA polymerase II transcription, poly(A)-coupled (ortholog); positive regulation of DNA-templated transcription, elongation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN nuclear matrix (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955439 7282264 7361855 - 102021599 AGCD01035764;AGCD01035765;AGCD01035766;GBBH01052180;GBDJ01312307;XM_013517331 XP_013372785 MODEL 8744271 protein-coding Tmprss9 transmembrane serine protease 9 ENCODES a protein that exhibits serine-type peptidase activity (ortholog); INVOLVED IN plasminogen activation (ortholog); proteolysis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Developmental Disabilities (ortholog) NW_004955495 5782817 5800988 - 102013187 AGCD01062029;AGCD01062030;AGCD01062031;AGCD01062032;AGCD01062033;GBCB01055890;GBCE01074655;XM_013505213 XP_013360667 MODEL 10362867 protein-coding LOC106148070 protocadherin gamma-A1-like NW_004955415 12434749 12442721 - 106148070 AGCD01016196;GBDK01020006;XM_013512162;XM_013512163 XP_013367616;XP_013367617 MODEL 10383552 ncrna LOC106146424 uncharacterized LOC106146424 NW_004955478 4299970 4300762 - 106146424 AGCD01055846;GBBH01215984;XR_001230844 MODEL 9014683 protein-coding Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase activity (ortholog); 1-phosphatidylinositol-3-kinase regulator activity (ortholog); ATPase binding (ortholog); INVOLVED IN B cell differentiation (ortholog); cellular response to fatty acid (ortholog); cellular response to insulin stimulus (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH agammaglobulinemia 7 (ortholog); Alzheimer's disease (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN cell-cell junction (ortholog); cis-Golgi network (ortholog); cytoplasm (ortholog) NW_004955446 1020707 1098327 - 102010955 AGCD01039951;AGCD01039952;GBDK01077429;XM_005392596;XM_005392597 XP_005392653;XP_005392654 MODEL 9064075 protein-coding LOC102024127 secretory carrier-associated membrane protein 4 NW_004955495 6123148 6142488 - 102024127 AGCD01062051;AGCD01062052;GBCB01076724;XM_005405943;XM_013505268;XM_013505269;XM_013505270;XM_013505271;XM_013505272 XP_005406000;XP_013360722;XP_013360723;XP_013360724;XP_013360725;XP_013360726 MODEL 8729472 pseudo LOC102009251 heterogeneous nuclear ribonucleoprotein D-like pseudogene NW_004955455 3817536 3818804 + 102009251 AGCD01045653;XR_262827 MODEL 10265553 ncrna LOC106149262 uncharacterized LOC106149262 NW_004955441 13765288 13767338 + 106149262 AGCD01037160;GBBH01138108;XR_001235317 MODEL 8854217 ncrna LOC102003132 uncharacterized LOC102003132 NW_004955417 30984825 30997985 + 102003132 AGCD01018637;GBDF01119746;XR_001233438;XR_001233439;XR_001233440;XR_001233441;XR_001233442 MODEL 9058436 protein-coding LOC102006251 olfactory receptor 13C3-like NW_004955419 21880670 21881698 + 102006251 AGCD01020289;XM_013513142 XP_013368596 MODEL 8725170 protein-coding Tesk2 testis associated actin remodelling kinase 2 ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); focal adhesion assembly (ortholog); protein phosphorylation (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955464 12789493 12924077 + 102003634 AGCD01050228;AGCD01050229;AGCD01050230;AGCD01050231;AGCD01050232;AGCD01050233;AGCD01050234;AGCD01050235;AGCD01050236;AGCD01050237;AGCD01050238;AGCD01050239;AGCD01050240;GBCQ01123838;GBDF01044666;XM_005398714 XP_005398771 MODEL 10330596 pseudo LOC106146295 replication factor C subunit 4 pseudogene NW_004955443 7938534 7949883 + 106146295 AGCD01038304 MODEL 8888036 protein-coding Pofut1 protein O-fucosyltransferase 1 ENCODES a protein that exhibits peptide-O-fucosyltransferase activity (ortholog); INVOLVED IN angiogenesis (ortholog); heart development (ortholog); nervous system development (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH Dowling-Degos disease (ortholog); Dowling-Degos Disease 2 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); membrane (ortholog) NW_004955422 28809901 28833186 - 102010377 AGCD01023370;AGCD01023371;GBCQ01062176;XM_005384876 XP_005384933 MODEL 8767659 protein-coding Spata3 spermatogenesis associated 3 FOUND IN sperm flagellum (ortholog) NW_004955453 4435819 4453138 - 102007732 AGCD01044691;GBDF01011046;XM_013519989;XM_013519990;XR_001236193;XR_001236194 XP_013375443;XP_013375444 MODEL 9019484 protein-coding Sqor sulfide quinone oxidoreductase ENCODES a protein that exhibits glutathione-dependent sulfide quinone oxidoreductase activity (ortholog); sulfide:quinone oxidoreductase activity (ortholog); INVOLVED IN sulfide oxidation, using sulfide:quinone oxidoreductase (ortholog); ASSOCIATED WITH COVID-19 (ortholog); SULFIDE:QUINONE OXIDOREDUCTASE DEFICIENCY (ortholog); FOUND IN mitochondrion (ortholog) NW_004955409 7831698 7857249 - 102017960 AGCD01009367;GBCB01056193;XM_005376724 XP_005376781 MODEL 8978234 ncrna LOC102004490 uncharacterized LOC102004490 NW_004955421 23169752 23183018 + 102004490 AGCD01022173;GBDF01042502;XR_260816 MODEL 8972837 protein-coding Ndst3 N-deacetylase and N-sulfotransferase 3 ENCODES a protein that exhibits deacetylase activity (ortholog); heparan sulfate N-deacetylase activity (ortholog); heparan sulfate N-sulfotransferase activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process (ortholog) NW_004955428 21671432 21853492 - 102026659 AGCD01028145;AGCD01028146;AGCD01028147;AGCD01028148;AGCD01028149;AGCD01028150;AGCD01028151;AGCD01028152;AGCD01028153;AGCD01028154;GBDJ01048910;XM_005386806;XM_005386807;XM_013515341;XM_013515342;XM_013515343 XP_005386863;XP_005386864;XP_013370795;XP_013370796;XP_013370797 MODEL 8824245 protein-coding Slc2a10 solute carrier family 2 member 10 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); dehydroascorbic acid transmembrane transporter activity (ortholog); INVOLVED IN artery development (ortholog); cell redox homeostasis (ortholog); D-glucose import across plasma membrane (ortholog); ASSOCIATED WITH aortic disease (ortholog); arterial tortuosity syndrome (ortholog); bicuspid aortic valve disease (ortholog); FOUND IN cytosol (ortholog); endomembrane system (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955445 10708147 10722109 - 102016323 AGCD01039677;AGCD01039678;GBDF01078357;XM_005392370 XP_005392427 MODEL 9019167 pseudo LOC102028289 eukaryotic initiation factor 4A-II pseudogene NW_004955471 12531065 12532838 + 102028289 AGCD01053296 MODEL 8927467 pseudo LOC102015369 DNA endonuclease RBBP8 pseudogene NW_004955405 5020117 5022070 - 102015369 AGCD01004673 MODEL 8969105 protein-coding Pabpc4l poly(A) binding protein cytoplasmic 4 like NW_004955428 8613395 8616432 + 102025930 AGCD01027804;GBCQ01141470;XM_005386713 XP_005386770 MODEL 9009913 pseudo LOC102020600 schwannomin-interacting protein 1 pseudogene NW_004955432 22769942 22770616 - 102020600 AGCD01031266 MODEL 8719535 protein-coding Erich2 glutamate rich 2 NW_004955449 4013473 4040524 - 102023213 AGCD01041872;GBBH01000968;XM_005393243;XM_013518737;XM_013518738;XM_013518739;XM_013518740;XM_013518741;XM_013518742;XM_013518743 XP_005393300;XP_013374191;XP_013374192;XP_013374193;XP_013374194;XP_013374195;XP_013374196;XP_013374197 MODEL 8960134 protein-coding Ifngr1 interferon gamma receptor 1 ENCODES a protein that exhibits type II interferon receptor activity (ortholog); INVOLVED IN astrocyte activation (ortholog); defense response to virus (ortholog); microglial cell activation (ortholog); PARTICIPATES IN type II interferon signaling pathway; ASSOCIATED WITH allergic disease (ortholog); arteriosclerosis (ortholog); asthma (ortholog); FOUND IN dendrite (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955436 22183318 22199013 + 102019637 AGCD01034087;GBCE01075143;XM_005389280 XP_005389337 MODEL 8717195 ncrna LOC102008881 uncharacterized LOC102008881 NW_004955520 1038221 1056799 - 102008881 AGCD01068041;AGCD01068042;GBDF01278076;XR_264581 MODEL 8865810 protein-coding Shisal2a shisa like 2A NW_004955464 6520481 6547181 - 102016574 AGCD01050029;AGCD01050030;GBDJ01051237;XM_005398572;XM_005398573 XP_005398629;XP_005398630 MODEL 8871064 protein-coding Klrg1 killer cell lectin like receptor G1 ENCODES a protein that exhibits carbohydrate binding (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955413 6119299 6131907 - 102022686 AGCD01013709;AGCD01013710;GBDK01026415;XM_005378892;XM_005378893 XP_005378949;XP_005378950 MODEL 8901590 pseudo LOC102025207 TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L pseudogene NW_004955454 3332608 3333948 + 102025207 AGCD01045067 MODEL 8855855 pseudo LOC102003440 ankyrin repeat domain-containing protein 27 pseudogene NW_004955474 5254195 5258861 - 102003440 AGCD01054402 MODEL 8848780 protein-coding Pgm1 phosphoglucomutase 1 ENCODES a protein that exhibits magnesium ion binding (ortholog); phosphoglucomutase activity (ortholog); INVOLVED IN cellular response to magnetism (ortholog); galactose catabolic process via UDP-galactose, Leloir pathway (ortholog); glucose metabolic process (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; fructose-1,6-bisphosphatase deficiency pathway; galactokinase deficiency pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Colorectal Neoplasms (ortholog); congenital disorder of glycosylation (ortholog); FOUND IN cytosol (ortholog); Z disc (ortholog) NW_004955423 26408775 26437527 - 102003887 AGCD01024096;GBBH01178702;XM_005385325 XP_005385382 MODEL 8871437 ncrna LOC102018430 uncharacterized LOC102018430 NW_004955434 6923205 7013018 - 102018430 AGCD01032221;AGCD01032222;AGCD01032223;GBBH01025474;XR_001234808;XR_261613;XR_261615 MODEL 8808180 pseudo LOC102012409 5-azacytidine-induced protein 2 pseudogene NW_004955409 26519198 26520981 - 102012409 AGCD01010189 MODEL 8731531 protein-coding Bin3 bridging integrator 3 INVOLVED IN intracellular protein localization (ortholog); myoblast migration involved in skeletal muscle regeneration (ortholog); regulation of lamellipodium assembly (ortholog); FOUND IN actin cytoskeleton (ortholog) NW_004955403 46042885 46085029 - 102013997 AGCD01002849;GBDF01085029;XM_005373686 XP_005373743 MODEL 9002603 protein-coding Shisal2b shisa like 2B NW_004955446 4268531 4289011 - 102022341 AGCD01040034;GBDI01277575;XM_005392635 XP_005392692 MODEL 10181304 ncrna LOC106146296 uncharacterized LOC106146296 NW_004955410 12803297 12814642 + 106146296 AGCD01010872;XR_001232732 MODEL 39131503 protein-coding SPATA3 spermatosis associated 3 39132055 snorna SNORD18 Small nucleolar RNA SNORD18 8804704 pseudo LOC102026973 chromobox protein homolog 3 pseudogene NW_004955416 10476391 10476954 - 102026973 AGCD01017141 MODEL 10106580 protein-coding LOC106146694 translation initiation factor IF-2-like NW_004955407 36333990 36335834 - 106146694 AGCD01007763;AGCD01007764;GBCB01100435;GBDK01420937;XM_013504681 XP_013360135 MODEL 8967139 protein-coding LOC102030063 olfactory receptor 51L1-like NW_004955414 20873578 20874537 + 102030063 AGCD01015394;XM_005380483 XP_005380540 MODEL 8914694 protein-coding Tmsb10 thymosin beta 10 ASSOCIATED WITH allergic contact dermatitis (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955424 2471845 2472515 - 102008124 AGCD01024283;GBCC01033088;GBCQ01011061;XM_005385446 XP_005385503 MODEL 39133503 snrna U4 U4 spliceosomal RNA 8716564 ncrna LOC102005912 uncharacterized LOC102005912 NW_004955412 3097642 3103353 - 102005912 AGCD01012565;GBDF01016512;XR_001232865;XR_001232866;XR_001232867 MODEL 8702834 ncrna LOC102026603 uncharacterized LOC102026603 NW_004955455 15424473 15437401 - 102026603 AGCD01046107;GBDJ01385206;XR_262862 MODEL 8704500 ncrna LOC102018063 uncharacterized LOC102018063 NW_004955460 12992444 12996471 - 102018063 AGCD01048666;GBDK01027678;XR_001236498;XR_001236499 MODEL 9045238 protein-coding Trpc1 transient receptor potential cation channel subfamily C member 1 ENCODES a protein that exhibits ATPase binding (ortholog); inositol 1,4,5 trisphosphate binding (ortholog); monoatomic cation channel activity (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); cellular response to hypoxia (ortholog); melanin biosynthetic process (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); Diabetic Nephropathies (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN basolateral plasma membrane (ortholog); cation channel complex (ortholog); costamere (ortholog) NW_004955508 3143868 3211613 - 102013194 AGCD01065805;GBCE01163015;GBDF01158759;XM_005407739 XP_005407796 MODEL 8997263 ncrna LOC102009252 uncharacterized LOC102009252 NW_004955407 17252038 17275416 - 102009252 AGCD01007243;AGCD01007244;AGCD01007245;AGCD01007246;GBDF01238047;XR_001231027;XR_259564;XR_259565 MODEL 8995980 pseudo LOC102019601 N-alpha-acetyltransferase 50 pseudogene NW_004955419 564842 565381 + 102019601 AGCD01019595 MODEL 10118767 ncrna LOC106146552 uncharacterized LOC106146552 NW_004955484 2208060 2216488 - 106146552 AGCD01058093;AGCD01058094;GBDF01295275;XR_001231040 MODEL 9023156 pseudo LOC102025553 60S ribosomal protein L7 pseudogene NW_004955410 28737408 28746280 - 102025553 AGCD01011257 MODEL 8971998 ncrna LOC102023828 uncharacterized LOC102023828 NW_004955429 15272587 15276664 + 102023828 AGCD01028800;AGCD01028801;GBDF01074366;XR_261337 MODEL 8847922 protein-coding LOC102003136 histone H2A type 1-A INVOLVED IN chromatin organization (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955483 1358562 1359048 + 102003136 AGCD01057645;GBDF01054005;XM_005403345 XP_005403402 MODEL 8941544 pseudo LOC102007357 transmembrane protein 168 pseudogene NW_004955511 1610996 1613016 + 102007357 AGCD01066376 MODEL 8765388 protein-coding Tesmin testis expressed metallothionein like protein INVOLVED IN male meiotic nuclear division (ortholog); spermatogenesis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955422 17161396 17199649 + 102029756 AGCD01022913;AGCD01022914;GBDF01005749;XM_005384266;XM_005384267 XP_005384323;XP_005384324 MODEL 10321391 protein-coding LOC106148071 protocadherin gamma-A10 NW_004955415 12361560 12364795 - 106148071 AGCD01016189;GBBH01127572;GBCE01045258;XM_013512165 XP_013367619 MODEL 8748384 protein-coding Scai suppressor of cancer cell invasion ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN negative regulation of cell migration (ortholog); negative regulation of Rho protein signal transduction (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955419 3137745 3296460 + 102019808 AGCD01019707;AGCD01019708;AGCD01019709;AGCD01019710;AGCD01019711;AGCD01019712;AGCD01019713;AGCD01019714;AGCD01019715;AGCD01019716;AGCD01019717;GBDF01047983;XM_005382478;XM_005382479;XM_013513153;XR_260604 XP_005382535;XP_005382536;XP_013368607 MODEL 10193133 pseudo LOC106146976 nucleolin pseudogene NW_004955510 6050251 6052549 + 106146976 AGCD01066299 MODEL 9008735 protein-coding Pgm2 phosphoglucomutase 2 ENCODES a protein that exhibits phosphoglucomutase activity (ortholog); phosphopentomutase activity (ortholog); INVOLVED IN glucose metabolic process (ortholog); glycogen biosynthetic process (ortholog); glycogen catabolic process (ortholog); PARTICIPATES IN glycogen biosynthetic pathway; glycogen degradation pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytosol (ortholog) NW_004955443 9302011 9329631 - 102009429 AGCD01038347;AGCD01038348;GBCB01058679;GBDI01133806;XM_013518108;XM_013518109 XP_013373562;XP_013373563 MODEL 8787019 protein-coding Xkr5 XK related 5 FOUND IN plasma membrane (ortholog) NW_004955403 53964767 53981549 + 102007726 AGCD01003082;AGCD01003083;GBBH01134536;XM_005373843;XM_005373845;XM_013514597;XM_013514598;XM_013514601 XP_005373900;XP_005373902;XP_013370051;XP_013370052;XP_013370055 MODEL 8836150 protein-coding LOC102010041 coatomer subunit gamma-2 NW_004955410 36982233 37086997 + 102010041 AGCD01011442;AGCD01011443;AGCD01011444;AGCD01011445;GBDF01004497;XM_005377554;XM_013510640 XP_005377611;XP_013366094 MODEL 8996615 protein-coding Lars1 leucyl-tRNA synthetase 1 ENCODES a protein that exhibits aminoacyl-tRNA deacylase activity (ortholog); glutamine-tRNA ligase activity (ortholog); GTPase activator activity (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to amino acid stimulus (ortholog); cellular response to L-leucine (ortholog); ASSOCIATED WITH infantile liver failure syndrome 1 (ortholog); microcephaly (ortholog); sensorineural hearing loss (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955415 7923292 7983757 + 102018179 AGCD01016059;AGCD01016060;GBDF01054280;XM_005380680 XP_005380737 MODEL 9014535 ncrna LOC102028297 uncharacterized LOC102028297 NW_004955417 30369431 30371982 + 102028297 AGCD01018619;GBDK01346293;XR_260518 MODEL 8882298 ncrna LOC102024130 uncharacterized LOC102024130 NW_004955424 13576197 13580849 - 102024130 AGCD01024636;GBDF01251114;XR_261063 MODEL 8916503 pseudo LOC102027644 L-lactate dehydrogenase B chain pseudogene NW_004955481 6935420 6936448 - 102027644 AGCD01057043 MODEL 8891437 protein-coding Shkbp1 SH3KBP1 binding protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN positive regulation of epidermal growth factor receptor signaling pathway (ortholog); FOUND IN lysosome (ortholog) NW_004955578 716818 730593 - 102011711 AGCD01075493;GBDK01090513;XM_005414043 XP_005414100 MODEL 39133504 snrna U4 U4 spliceosomal RNA 10377638 ncrna LOC106149263 uncharacterized LOC106149263 NW_004955441 6842402 6844715 + 106149263 AGCD01036945;GBDF01118204;XR_001235320 MODEL 10201643 protein-coding Spata31g1 SPATA31 subfamily G member 1 NW_004958072 16 1146 + 106147709 AGCD01081468;GBCB01053674;GBDF01010963;XM_013510256 XP_013365710 MODEL 8964917 pseudo LOC102011998 derlin-1 pseudogene NW_004955422 13345152 13349677 + 102011998 AGCD01022821 MODEL 8741484 ncrna LOC102008892 uncharacterized LOC102008892 NW_004955439 2679785 2686659 - 102008892 AGCD01035657;GBDF01185074;XR_261968 MODEL 10165616 pseudo LOC106150086 histone H3.3C-like NW_004955464 12304578 12306426 + 106150086 AGCD01050190 MODEL 8995804 protein-coding Ifngr2 interferon gamma receptor 2 ENCODES a protein that exhibits type II interferon receptor activity (ortholog); INVOLVED IN defense response to virus (ortholog); microglial cell activation (ortholog); positive regulation of glutamate receptor signaling pathway (ortholog); ASSOCIATED WITH acute myocardial infarction (ortholog); allergic asthma (ortholog); congenital heart disease (ortholog); FOUND IN plasma membrane (ortholog) NW_004955407 32846927 32863155 + 102015925 AGCD01007685;GBCB01022004;GBDK01022293;XM_013504273 XP_013359727 MODEL 8915617 pseudo LOC102018433 60S ribosomal protein L23a pseudogene NW_004955527 2330626 2331113 + 102018433 AGCD01069431 MODEL 10095122 protein-coding LOC106146425 uncharacterized LOC106146425 NW_004955406 21182206 21208152 - 106146425 AGCD01006120;GBBH01100500;XM_013503176 XP_013358630 MODEL 8797279 pseudo LOC102029376 T-complex protein 1 subunit beta-like NW_004955461 366271 368118 - 102029376 AGCD01048794 MODEL 8717588 ncrna LOC102021394 uncharacterized LOC102021394 NW_004955547 1572431 1574209 - 102021394 AGCD01072233;GBBH01184529;XR_264902 MODEL 8708903 protein-coding Ndst4 N-deacetylase and N-sulfotransferase 4 ENCODES a protein that exhibits deacetylase activity (ortholog); heparan sulfate N-sulfotransferase activity (ortholog); N-acetylglucosamine deacetylase activity (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog) NW_004955428 24376587 24636555 + 102028318 AGCD01028255;AGCD01028256;AGCD01028257;AGCD01028258;AGCD01028259;AGCD01028260;AGCD01028261;AGCD01028262;AGCD01028263;AGCD01028264;AGCD01028265;GBDF01226340;XM_013515257;XM_013515258;XM_013515259;XM_013515260;XM_013515261 XP_013370711;XP_013370712;XP_013370713;XP_013370714;XP_013370715 MODEL 8907005 protein-coding Slc2a11 solute carrier family 2 member 11 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); fructose transmembrane transporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); fructose transmembrane transport (ortholog); FOUND IN plasma membrane (ortholog) NW_004955455 8374144 8399766 - 102010337 AGCD01045888;GBCE01119522;XM_005396414;XM_005396415 XP_005396471;XP_005396472 MODEL 8920507 pseudo LOC102015374 60S ribosomal protein L4 pseudogene NW_004955406 5796336 5796880 - 102015374 AGCD01005741 MODEL 39132057 snorna SNORD18A Small nucleolar RNA SNORD18 8829047 ncrna LOC102020601 uncharacterized LOC102020601 NW_004955524 1966728 1975410 + 102020601 AGCD01068789;GBDJ01164716;XR_001231956 MODEL 9016932 pseudo LOC102026975 60S acidic ribosomal protein P1 pseudogene NW_004955481 4920266 4957286 - 102026975 AGCD01056954;AGCD01056955;AGCD01056956;AGCD01056957 MODEL 10385476 protein-coding LOC106146297 zinc finger protein 64 homolog NW_004955445 6516089 6541847 + 106146297 AGCD01039488;GBDF01081824;GBDI01259240;XM_013518326 XP_013373780 MODEL 8818183 protein-coding Tmsb15a thymosin beta 15A INVOLVED IN positive regulation of cell migration (ortholog) NW_004955548 84399 86594 - 102019439 AGCD01072314;AGCD01072315;GBDF01303731;XM_013508517 XP_013363971 MODEL 8883847 protein-coding Pik3r2 phosphoinositide-3-kinase regulatory subunit 2 ENCODES a protein that exhibits phosphatidylinositol 3-kinase regulatory subunit binding (ortholog); phosphotyrosine residue binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); insulin receptor signaling pathway (ortholog); intracellular glucose homeostasis (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; FasL mediated signaling pathway; phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH colon cancer (ortholog); Colonic Neoplasms (ortholog); epilepsy (ortholog); FOUND IN focal adhesion (ortholog); nucleus (ortholog); phosphatidylinositol 3-kinase complex, class IA (ortholog) NW_004955524 3234111 3241445 - 102011143 AGCD01068870;AGCD01068871;GBCE01137903;GBDF01123732;XM_013507263 XP_013362717 MODEL 8773367 ncrna LOC102026606 uncharacterized LOC102026606 NW_004955458 1232735 1237386 - 102026606 AGCD01047172;GBDF01306729;XR_001236441;XR_262960 MODEL 8793600 protein-coding LOC102025212 zinc finger protein 709-like NW_004955408 2924 43257 + 102025212 AGCD01007905;AGCD01007906;AGCD01007907;GBDF01011173;XM_005375996;XM_013507810 XP_005376053;XP_013363264 MODEL 8921322 protein-coding Pofut2 protein O-fucosyltransferase 2 ENCODES a protein that exhibits fucosyltransferase activity (ortholog); peptide-O-fucosyltransferase activity (ortholog); INVOLVED IN mesoderm formation (ortholog); positive regulation of protein folding (ortholog); protein O-linked glycosylation via fucose (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955407 41972833 41984095 - 102012501 AGCD01007884;GBCQ01098842;XM_005375911 XP_005375968 MODEL 9036934 pseudo LOC102012410 cullin-4B pseudogene NW_004955462 1327574 1331025 - 102012410 AGCD01049112 MODEL 10149362 ncrna LOC106149264 uncharacterized LOC106149264 NW_004955441 19688441 19693338 + 106149264 AGCD01037361;AGCD01037362;GBDF01279746;XR_001235321 MODEL 8979167 pseudo LOC102008893 60S ribosomal protein L17 pseudogene NW_004955439 18545099 18545654 + 102008893 AGCD01036056 MODEL 9010415 protein-coding Birc2 baculoviral IAP repeat containing 2 ENCODES a protein that exhibits FBXO family protein binding (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cellular response to tumor necrosis factor (ortholog); necroptotic process (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN FasL mediated signaling pathway; nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); bowenoid papulosis (ortholog); breast cancer (ortholog); FOUND IN CD40 receptor complex (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955412 5658322 5685628 + 102012516 AGCD01012645;AGCD01012646;AGCD01012647;AGCD01012648;GBCB01002048;GBDI01082457;XM_013511020 XP_013366474 MODEL 8798956 ncrna LOC102030068 uncharacterized LOC102030068 NW_004955415 22825433 22848646 + 102030068 AGCD01016544;GBBH01149107;XR_001233188;XR_260312 MODEL 8783437 ncrna LOC102006252 uncharacterized LOC102006252 NW_004955486 9666236 9670686 - 102006252 AGCD01059195;GBDK01396724;XR_001231108;XR_001231109;XR_001231110;XR_001231111;XR_001231112;XR_263975;XR_263977 MODEL 8768272 ncrna LOC102005913 uncharacterized LOC102005913 NW_004955465 7025399 7028146 - 102005913 AGCD01050450;GBCQ01175139;XR_001236763;XR_263247 MODEL 9032119 pseudo LOC102028298 hematological and neurological expressed 1-like protein pseudogene NW_004955481 8174077 8181657 - 102028298 AGCD01057082 MODEL 9036266 ncrna LOC102018066 uncharacterized LOC102018066 NW_004955411 12009836 12011426 - 102018066 AGCD01011835;GBDF01078244;XR_259933 MODEL 8741352 pseudo LOC102003443 mitochondrial fission factor pseudogene NW_004955416 13475518 13476401 - 102003443 AGCD01017224;XM_005381465 MODEL 8761896 pseudo LOC102026977 synaptonemal complex protein 2-like NW_004955418 13668742 13704081 + 102026977 AGCD01019053;AGCD01019054;AGCD01019055 MODEL 8767594 protein-coding Sqstm1 sequestosome 1 ENCODES a protein that exhibits enzyme binding (ortholog); identical protein binding (ortholog); ionotropic glutamate receptor binding (ortholog); INVOLVED IN aggrephagy (ortholog); autophagy (ortholog); brown fat cell proliferation (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; mitochondrial autophagy pathway; nuclear factor, erythroid 2 like 2 signaling pathway; ASSOCIATED WITH acute myocardial infarction (ortholog); alcohol-associated liver disease (ortholog); alcoholic hepatitis (ortholog); FOUND IN aggresome (ortholog); amphisome (ortholog); autolysosome (ortholog) NW_004955408 757426 764989 - 102030388 AGCD01007929;GBBH01004456;GBDF01051499;XM_013507872 XP_013363326 MODEL 8751917 protein-coding LOC102024131 phospholipid-transporting ATPase IB NW_004955497 4990555 5444957 + 102024131 AGCD01062590;AGCD01062591;AGCD01062592;AGCD01062593;GBCE01063645;GBDF01004666;XM_005406335;XM_013505503;XM_013505504;XM_013505505 XP_005406392;XP_013360957;XP_013360958;XP_013360959 MODEL 9027124 protein-coding LOC102004491 olfactory receptor 2A5 NW_004955491 387723 388640 + 102004491 AGCD01060331;XM_005404723 XP_005404780 MODEL 10282826 pseudo LOC106150087 small nuclear ribonucleoprotein E pseudogene NW_004955464 12331106 12331643 - 106150087 AGCD01050190 MODEL 8943019 protein-coding Trpc3 transient receptor potential cation channel subfamily C member 3 ENCODES a protein that exhibits calcium channel activity (ortholog); calcium-activated cation channel activity (ortholog); inositol 1,4,5 trisphosphate binding (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); positive regulation of calcium ion transport into cytosol (ortholog); positive regulation of cardiac muscle hypertrophy in response to stress (ortholog); ASSOCIATED WITH Albuminuria (ortholog); bipolar disorder (ortholog); cerebellar ataxia type 41 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955428 18628951 18678525 + 102017360 AGCD01028069;GBCB01100950;XM_005386779;XM_013515247 XP_005386836;XP_013370701 MODEL 8985876 protein-coding LOC102025557 predicted GPI-anchored protein 58 NW_004955411 35501039 35504004 - 102025557 AGCD01012434;GBDI01244531;XM_005377945;XM_013510735 XP_005378002;XP_013366189 MODEL 10263825 protein-coding LOC106148072 protocadherin gamma-B2-like NW_004955415 12411862 12414784 - 106148072 AGCD01016194;GBBH01005795;XM_013512166 XP_013367620 MODEL 9021951 protein-coding Tespa1 thymocyte expressed, positive selection associated 1 ENCODES a protein that exhibits phospholipase binding (ortholog); INVOLVED IN COP9 signalosome assembly (ortholog); intracellular protein localization (ortholog); positive regulation of T cell differentiation in thymus (ortholog); FOUND IN COP9 signalosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955458 2084931 2108328 - 102010450 AGCD01047214;GBDK01266984;XM_013521032 XP_013376486 MODEL 10390678 ncrna LOC106146977 uncharacterized LOC106146977 NW_004955510 3417760 3448466 - 106146977 AGCD01066232;AGCD01066233;AGCD01066234;AGCD01066235;AGCD01066236;GBDF01295426;XR_001231661;XR_001231662 MODEL 9038598 protein-coding Pabpc5 poly(A) binding protein cytoplasmic 5 FOUND IN cytosol (ortholog); mitochondrial matrix (ortholog) NW_004955525 2847458 2849836 - 102022323 AGCD01069107;XM_005409738 XP_005409795 MODEL 8814675 protein-coding Scamp1 secretory carrier membrane protein 1 ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN endocytosis (ortholog); exocytosis (ortholog); protein transport (ortholog); FOUND IN clathrin-coated vesicle (ortholog); cytoplasmic vesicle membrane (ortholog); membrane (ortholog) NW_004955425 22562336 22686661 - 102026340 AGCD01025822;AGCD01025823;AGCD01025824;AGCD01025825;AGCD01025826;AGCD01025827;GBBH01052212;GBDI01227262;XM_013514889 XP_013370343 MODEL 8838711 protein-coding Erich3 glutamate rich 3 INVOLVED IN cilium assembly (ortholog); FOUND IN axoneme (ortholog); cilium (ortholog); cytoplasm (ortholog) NW_004955423 18009243 18110340 + 102028651 AGCD01023866;GBDI01375173;XM_005385238;XM_005385239 XP_005385295;XP_005385296 MODEL 8725768 ncrna LOC102021396 uncharacterized LOC102021396 NW_004955550 1116020 1133375 + 102021396 AGCD01072549;AGCD01072550;GBDF01084147;XR_001232258 MODEL 8951352 ncrna LOC102008894 uncharacterized LOC102008894 NW_004955545 2826658 2829716 + 102008894 AGCD01071923;GBDF01218328;XR_264881 MODEL 9058451 protein-coding Pgm2l1 phosphoglucomutase 2 like 1 ENCODES a protein that exhibits glucose-1,6-bisphosphate synthase activity (ortholog); phosphoglucomutase activity (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; glycogen storage disease type III pathway; glycogen storage disease type IV pathway; ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorder with Hypotonia, Dysmorphic Facies, and Skin Abnormalities (ortholog) NW_004955414 17240987 17310210 + 102006649 AGCD01015235;AGCD01015236;GBCB01005167;XM_005379916;XM_005379917 XP_005379973;XP_005379974 MODEL 39133505 snrna U4 U4 spliceosomal RNA 8768580 protein-coding Kmo kynurenine 3-monooxygenase ENCODES a protein that exhibits FAD binding (ortholog); kynurenine 3-monooxygenase activity (ortholog); NAD(P)H oxidase H2O2-forming activity (ortholog); INVOLVED IN cellular response to interleukin-1 (ortholog); cellular response to lipopolysaccharide (ortholog); kynurenic acid biosynthetic process (ortholog); PARTICIPATES IN kynurenine metabolic pathway; tryptophan metabolic pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); allergic contact dermatitis (ortholog); depressive disorder (ortholog); FOUND IN extracellular region (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955406 10496102 10527181 - 102018799 AGCD01005864;GBDK01116425;XM_005374821 XP_005374878 MODEL 8818191 protein-coding LOC102019604 7-alpha-hydroxycholest-4-en-3-one 12-alpha-hydroxylase ENCODES a protein that exhibits sterol 12-alpha-hydroxylase activity (ortholog); INVOLVED IN bile acid biosynthetic process (ortholog); positive regulation of intestinal cholesterol absorption (ortholog); response to cholesterol (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); extrahepatic cholestasis (ortholog) NW_004955420 27988067 27990637 + 102019604 AGCD01021466;GBCQ01087698;XM_005383508 XP_005383565 MODEL 8775596 protein-coding Slc2a12 solute carrier family 2 member 12 INVOLVED IN D-glucose transmembrane transport (ortholog); FOUND IN cell junction (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955439 2482440 2539510 + 102007699 AGCD01035651;AGCD01035652;GBDF01156647;XM_005390508;XM_005390509;XM_013517402 XP_005390565;XP_005390566;XP_013372856 MODEL 9023479 protein-coding Lars2 leucyl-tRNA synthetase 2, mitochondrial ENCODES a protein that exhibits leucine-tRNA ligase activity (ortholog); INVOLVED IN leucyl-tRNA aminoacylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); HYDROPS, LACTIC ACIDOSIS, AND SIDEROBLASTIC ANEMIA (ortholog); mitochondrial myopathy (ortholog); FOUND IN mitochondrion (ortholog) NW_004955420 26342129 26446959 - 102008863 AGCD01021401;AGCD01021402;AGCD01021403;AGCD01021404;GBBH01102481;XM_013513567 XP_013369021 MODEL 8760503 protein-coding LOC102009253 keratin-associated protein 20-2-like NW_004955407 30214295 30214462 + 102009253 AGCD01007628;XM_005375647 XP_005375704 MODEL 8904022 protein-coding Shld1 shieldin complex subunit 1 INVOLVED IN negative regulation of double-strand break repair via homologous recombination (ortholog); positive regulation of double-strand break repair via nonhomologous end joining (ortholog); positive regulation of isotype switching (ortholog); FOUND IN chromosome (ortholog); site of double-strand break (ortholog) NW_004955415 16180074 16282937 + 102013928 AGCD01016375;AGCD01016376;GBDJ01222624;XM_005380839;XM_005380840;XM_005380841;XM_005380842 XP_005380896;XP_005380897;XP_005380898;XP_005380899 MODEL 8733903 ncrna LOC102023830 uncharacterized LOC102023830 NW_004955429 22467556 22469699 + 102023830 AGCD01029028;GBDF01162819;XR_261387 MODEL 8828809 protein-coding Pik3r4 phosphoinositide-3-kinase regulatory subunit 4 INVOLVED IN autophagosome maturation (ortholog); cellular response to glucose starvation (ortholog); early endosome to late endosome transport (ortholog); PARTICIPATES IN autophagy pathway; inositol metabolic pathway; phosphoinositide metabolic pathway; FOUND IN axoneme (ortholog); late endosome (ortholog); phosphatidylinositol 3-kinase complex, class III (ortholog) NW_004955501 7604934 7681947 + 102013949 AGCD01064219;AGCD01064220;AGCD01064221;GBDI01138465;XM_005406858;XM_005406859;XM_005406860 XP_005406915;XP_005406916;XP_005406917 MODEL 10116904 ncrna LOC106146695 uncharacterized LOC106146695 NW_004955407 36334077 36338704 + 106146695 AGCD01007763;AGCD01007764;GBCB01024345;XR_001231246 MODEL 8995288 ncrna LOC102025217 uncharacterized LOC102025217 NW_004955409 3253468 3265102 - 102025217 AGCD01009237;GBDF01078183;XR_259747 MODEL 10109520 protein-coding LOC106149265 transcription initiation factor TFIID subunit 4-like NW_004955441 20013715 20014035 + 106149265 AGCD01037390;GBBH01032371;GBDJ01117255;XM_013517594 XP_013373048 MODEL 8947861 protein-coding Xkr6 XK related 6 FOUND IN plasma membrane (ortholog) NW_004955403 52410318 52636952 - 102025203 AGCD01003003;AGCD01003004;AGCD01003005;AGCD01003006;AGCD01003007;AGCD01003008;AGCD01003009;AGCD01003010;AGCD01003011;GBDJ01373326;XM_005373810 XP_005373867 MODEL 8899767 protein-coding LOC102004494 testis-specific Y-encoded-like protein 5 NW_004955422 306038 309442 - 102004494 AGCD01022403;AGCD01022404;XM_005384934 XP_005384991 MODEL 8834417 protein-coding Pofut3 protein O-fucosyltransferase 3 ENCODES a protein that exhibits fucosyltransferase activity (ortholog); peptide-O-fucosyltransferase activity (ortholog); INVOLVED IN N-glycan processing (ortholog); neuronal stem cell division (ortholog); positive regulation of protein secretion (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955463 9552387 9629029 - 102007203 AGCD01049788;AGCD01049789;AGCD01049790;AGCD01049791;AGCD01049792;AGCD01049793;AGCD01049794;GBCB01077274;GBCB01077275;XM_013521503;XR_001236637;XR_001236638 XP_013376957 MODEL 9054450 protein-coding LOC102020603 zinc finger protein 791-like NW_004955524 105801 127235 + 102020603 AGCD01068664;AGCD01068665;GBCQ01143020;XM_013507338;XM_013507339;XM_013507340 XP_013362792;XP_013362793;XP_013362794 MODEL 8912370 pseudo LOC102027645 zinc finger CCHC domain-containing protein 8 pseudogene NW_004955418 14138866 14140588 + 102027645 AGCD01019064 MODEL 39132059 snorna SNORD18C Small nucleolar RNA SNORD18 8981198 protein-coding Tet1 tet methylcytosine dioxygenase 1 ENCODES a protein that exhibits DNA 5-methylcytosine dioxygenase activity (ortholog); DNA binding (ortholog); iron ion binding (ortholog); INVOLVED IN cellular response to reactive oxygen species (ortholog); chromatin remodeling (ortholog); dendrite morphogenesis (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); hepatocellular carcinoma (ortholog); FOUND IN chromosome (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955425 20767406 20857165 + 102023376 AGCD01025760;AGCD01025761;AGCD01025762;AGCD01025763;AGCD01025764;GBDF01239503;XM_013514773 XP_013370227 MODEL 10349358 ncrna LOC106146553 uncharacterized LOC106146553 NW_004955407 17764632 17766474 - 106146553 AGCD01007262;GBDF01183371;XR_001231041 MODEL 9012523 protein-coding Birc3 baculoviral IAP repeat containing 3 ENCODES a protein that exhibits protein-containing complex binding (ortholog); transferase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to tumor necrosis factor (ortholog); necroptotic process (ortholog); negative regulation of necroptotic process (ortholog); PARTICIPATES IN ceramide signaling pathway; FasL mediated signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH adrenocortical carcinoma (ortholog); bowenoid papulosis (ortholog); brain glioma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955412 5624865 5643520 + 102012174 AGCD01012644;GBDJ01123917;XM_005377975;XM_013511018;XM_013511019 XP_005378032;XP_013366472;XP_013366473 MODEL 10097565 protein-coding LOC106146298 pyrin and HIN domain-containing protein 1-like NW_004955468 10805365 10828732 + 106146298 AGCD01052102;AGCD01052103;AGCD01052104;AGCD01052105;GBBH01070203;XM_013522463 XP_013377917 MODEL 8764255 pseudo LOC102008895 60S ribosomal protein L26-like NW_004955441 12522219 12523098 + 102008895 AGCD01037123 MODEL 8703566 pseudo LOC102006253 elongation factor 1-alpha 1-like NW_004955420 25364489 25376572 + 102006253 AGCD01021353;AGCD01021354 MODEL 10100650 pseudo LOC102003142 Ig heavy chain V-III region 23-like NW_004955487 14752 15297 - 102003142 AGCD01059204 MODEL 8802509 pseudo LOC102026608 peptidyl-prolyl cis-trans isomerase D-like NW_004955408 28506382 28507720 + 102026608 AGCD01008714 MODEL 10316752 protein-coding Tmsb4x thymosin beta 4 X-linked ENCODES a protein that exhibits actin monomer binding (ortholog); actin monomer sequestering activity (ortholog); enzyme binding (ortholog); INVOLVED IN negative regulation of actin filament polymerization (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of hematopoietic stem cell differentiation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); Joubert syndrome 1 (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955544 266397 268447 - 106147335 AGCD01071699;AY462140;GBDK01012466;XM_013508189 AAR26539;Q6S9C5;XP_013363643 MODEL 8707787 pseudo LOC102007358 olfactory receptor 5W2-like NW_004955511 700104 706604 - 102007358 AGCD01066338;AGCD01066339;XM_005408208 MODEL 8994313 pseudo LOC102018434 60S ribosomal protein L9 pseudogene NW_004955436 21412782 21413746 + 102018434 AGCD01034053 MODEL 9021137 pseudo LOC102003444 vesicle transport through interaction with t-SNAREs homolog 1B pseudogene NW_004955478 11045244 11049588 + 102003444 AGCD01056157 MODEL 8726076 protein-coding Kmt2a lysine methyltransferase 2A ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN anterior/posterior pattern specification (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); circadian regulation of gene expression (ortholog); PARTICIPATES IN DNA modification pathway; histone modification pathway; ASSOCIATED WITH Acute Erythroleukemia (ortholog); acute lymphoblastic leukemia (ortholog); acute monocytic leukemia (ortholog); FOUND IN histone methyltransferase complex (ortholog); MLL1 complex (ortholog); nucleoplasm (ortholog) NW_004955412 19586435 19670149 + 102010237 AGCD01012966;AGCD01012967;AGCD01012968;GBBH01208480;GBCE01008536;XM_005378244 XP_005378301 MODEL 8985136 protein-coding LOC102029377 uncharacterized protein CXorf67-like NW_004955461 3266891 3269400 - 102029377 AGCD01048850;GBDF01088475;XM_013521298 XP_013376752 MODEL 8757357 ncrna LOC102008896 uncharacterized LOC102008896 NW_004955547 2750784 2754477 + 102008896 AGCD01072294;GBBH01190398;XR_001232234;XR_001232235;XR_264910 MODEL 10328039 ncrna LOC106150088 uncharacterized LOC106150088 NW_004955464 12757850 12758796 + 106150088 AGCD01050223;GBBH01181151;XR_001236690 MODEL 10302389 ncrna LOC106146426 uncharacterized LOC106146426 NW_004955478 7690741 7721718 - 106146426 AGCD01055986;AGCD01055987;AGCD01055988;AGCD01055989;GBCE01085499;XR_001230848;XR_001230849 MODEL 8990697 protein-coding Ndufa1 NADH:ubiquinone oxidoreductase subunit A1 PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH genetic disease (ortholog); mitochondrial complex I deficiency (ortholog); nuclear type mitochondrial complex I deficiency 12 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955534 152291 154183 - 102007591 AGCD01070441;GBCC01012764;XM_005410429 XP_005410486 MODEL 8876819 protein-coding LOC102025218 leishmanolysin-like NW_004955409 37199857 37203329 + 102025218 AGCD01010498;GBDF01254756;XM_005377093;XM_005377094 XP_005377150;XP_005377151 MODEL 8939997 ncrna LOC102030069 uncharacterized LOC102030069 NW_004955415 30266573 30269876 - 102030069 AGCD01016660;GBDF01220334;XR_001233235;XR_001233236 MODEL 39131560 protein-coding XKR7 XK related 7 8880522 protein-coding Scamp2 secretory carrier membrane protein 2 INVOLVED IN protein transport (ortholog); FOUND IN Golgi apparatus (ortholog); membrane (ortholog); recycling endosome membrane (ortholog) NW_004955450 3070944 3095168 + 102007389 AGCD01042421;AGCD01042422;GBDF01043579;XM_005393533;XM_005393534 XP_005393590;XP_005393591 MODEL 8824445 protein-coding LOC102028299 endoplasmic reticulum aminopeptidase 2 NW_004955418 15735660 15754699 - 102028299 AGCD01019111;XM_013512877 XP_013368331 MODEL 8991736 ncrna LOC102018069 uncharacterized LOC102018069 NW_004955412 17652061 17663017 - 102018069 AGCD01012916;GBDF01083884;XR_001232864 MODEL 8716753 ncrna LOC102012411 uncharacterized LOC102012411 NW_004955411 2942448 2946613 + 102012411 AGCD01011526;GBCQ01140642;XR_259913 MODEL 8795035 protein-coding LOC102024133 melanoma-associated antigen 4-like NW_004955498 4509990 4510988 + 102024133 AGCD01063001;XM_005406484 XP_005406541 MODEL 8712436 ncrna LOC102026978 uncharacterized LOC102026978 NW_004955484 3031441 3043406 + 102026978 AGCD01058149;AGCD01058150;GBDK01273591;XR_263879 MODEL 8859132 protein-coding Las1l LAS1 like ribosome biogenesis factor INVOLVED IN rRNA processing (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN MLL1 complex (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955475 5143641 5189075 - 102007655 AGCD01054905;AGCD01054906;AGCD01054907;GBCC01045813;XM_005401565;XM_005401569;XM_005401570;XM_013502834;XM_013502835;XM_013502836;XM_013502837;XM_013502838;XM_013502839;XM_013502840;XM_013502841;XM_013502842;XM_013502843;XM_013502844 XP_005401622;XP_005401626;XP_005401627;XP_013358288;XP_013358289;XP_013358290;XP_013358291;XP_013358292;XP_013358293;XP_013358294;XP_013358295;XP_013358296;XP_013358297;XP_013358298 MODEL 8703384 ncrna LOC102026610 uncharacterized LOC102026610 NW_004955409 25163737 25192309 + 102026610 AGCD01010107;AGCD01010108;GBDF01177040;XR_259795 MODEL 8875471 protein-coding LOC102010044 ribosomal large subunit pseudouridine synthase B-like NW_004955412 5260904 5261677 - 102010044 AGCD01012623;GBDF01280111;GBDF01280112;XM_013511125 XP_013366579 MODEL 8934707 protein-coding Shld2 shieldin complex subunit 2 INVOLVED IN negative regulation of double-strand break repair via homologous recombination (ortholog); positive regulation of double-strand break repair via nonhomologous end joining (ortholog); positive regulation of isotype switching (ortholog); FOUND IN chromosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955510 6021477 6114745 + 102013637 AGCD01066299;AGCD01066300;AGCD01066301;GBDF01147026;XM_005407911;XM_005407912;XM_005407913;XM_013506312;XR_001231666 XP_005407968;XP_005407969;XP_005407970;XP_013361766 MODEL 8849079 ncrna LOC102015375 uncharacterized LOC102015375 NW_004955407 23626174 23638539 - 102015375 AGCD01007431;XR_259578 MODEL 8917623 protein-coding Trpc4 transient receptor potential cation channel subfamily C member 4 ENCODES a protein that exhibits beta-catenin binding (ortholog); cadherin binding (ortholog); calcium channel activity (ortholog); INVOLVED IN calcium ion import (ortholog); calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); lung cancer (ortholog); prostate cancer (ortholog); FOUND IN basolateral plasma membrane (ortholog); calcium channel complex (ortholog); cation channel complex (ortholog) NW_004955431 8283585 8479524 + 102020596 AGCD01030124;AGCD01030125;AGCD01030126;GBDJ01262104;XM_005387650;XM_005387651;XM_013515720 XP_005387707;XP_005387708;XP_013371174 MODEL 8792509 pseudo LOC102018445 heparan sulfate 2-O-sulfotransferase 1 pseudogene NW_004955569 1146936 1151749 + 102018445 AGCD01074643 MODEL 8908983 protein-coding Pik3r5 phosphoinositide-3-kinase regulatory subunit 5 ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase regulator activity (ortholog); G-protein beta/gamma-subunit complex binding (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); phosphatidylinositol metabolic process (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH ataxia-oculomotor apraxia 3 (ortholog); colon cancer (ortholog); spastic ataxia (ortholog); FOUND IN centriolar satellite (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955467 8025231 8091406 + 102011751 AGCD01051442;AGCD01051443;AGCD01051444;GBCE01163276;XM_005399388;XM_013522206;XM_013522207;XM_013522208;XM_013522209 XP_005399445;XP_013377660;XP_013377661;XP_013377662;XP_013377663 MODEL 8807028 protein-coding LOC102025558 olfactory receptor 139-like NW_004955467 13363714 13364661 + 102025558 AGCD01051671;XM_005399735 XP_005399792 MODEL 9012517 ncrna LOC102012000 uncharacterized LOC102012000 NW_004955423 27287604 27301513 + 102012000 AGCD01024120;AGCD01024121;GBCE01127032;XR_001234059 MODEL 8760446 protein-coding Spata31h1 SPATA31 subfamily H member 1 NW_004955469 9495012 9525267 + 102006899 AGCD01052504;AGCD01052505;GBDF01248600;XM_005400509 XP_005400566 MODEL 8843670 ncrna LOC102004497 uncharacterized LOC102004497 NW_004955499 552253 553238 - 102004497 AGCD01063239;XR_264215 MODEL 8821423 protein-coding Erich4 glutamate rich 4 NW_004955555 369918 373848 + 102018655 AGCD01073025;AGCD01073026;GBDI01212353;XM_005412351;XR_001232313 XP_005412408 MODEL 8888339 protein-coding Pabpn1 poly(A) binding protein nuclear 1 ENCODES a protein that exhibits RNA polymerase binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); MAPK cascade (ortholog); poly(A)+ mRNA export from nucleus (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; ASSOCIATED WITH oculopharyngeal muscular dystrophy (ortholog); Oculopharyngeal Muscular Dystrophy 1 (ortholog); FOUND IN cytoplasm (ortholog); nuclear inclusion body (ortholog); nuclear speck (ortholog) NW_004955409 37000423 37004823 - 102020094 AGCD01010486;AGCD01010487;GBBH01031166;GBCE01028701;XM_013510436 XP_013365890 MODEL 8960935 protein-coding Ifnk interferon kappa ENCODES a protein that exhibits type I interferon receptor binding (ortholog); INVOLVED IN cytokine-mediated signaling pathway (ortholog); regulation of DNA-templated transcription (ortholog); response to virus (ortholog) NW_004955472 7359453 7360055 - 102023465 AGCD01053621;XM_005415249 XP_005415306 MODEL 8721345 protein-coding Ndufa10 NADH:ubiquinone oxidoreductase subunit A10 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); INVOLVED IN mitochondrial electron transport, NADH to ubiquinone (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH genetic disease (ortholog); Leigh disease (ortholog); mitochondrial complex I deficiency (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955542 1329802 1370109 + 102020716 AGCD01071502;GBCB01005748;XM_005411173 XP_005411230 MODEL 626189153 snorna SNORD1A small nucleolar RNA, C/D box 1A 8878168 protein-coding LOC102019609 sulfotransferase 1A1 NW_004955493 6774927 6778161 - 102019609 AGCD01061137;GBCB01070177;XM_005405179;XM_013504816 XP_005405236;XP_013360270 MODEL 39131482 protein-coding BIRC5 baculoviral IAP repeat containing 5 8739881 protein-coding Sra1 steroid receptor RNA activator 1 ENCODES a protein that exhibits nuclear androgen receptor binding (ortholog); steroid receptor RNA activator RNA binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN negative regulation of myoblast differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN estrogen signaling pathway; ASSOCIATED WITH congestive heart failure (ortholog); hypogonadotropic hypogonadism 7 with or without anosmia (ortholog); Kallmann syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955418 126111 133498 + 102004386 AGCD01018668;GBDJ01085270;XM_005382026;XM_005382027 XP_005382083;XP_005382084 MODEL 8758145 protein-coding Tet2 tet methylcytosine dioxygenase 2 ENCODES a protein that exhibits DNA 5-methylcytosine dioxygenase activity (ortholog); ferrous iron binding (ortholog); zinc ion binding (ortholog); INVOLVED IN chromosomal 5-methylcytosine DNA demethylation, oxidation pathway (ortholog); cytosine metabolic process (ortholog); hematopoietic stem cell homeostasis (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); acute promyelocytic leukemia (ortholog); breast cancer (ortholog); FOUND IN chromosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955496 3885684 3963056 - 102010383 AGCD01062302;AGCD01062303;AGCD01062304;GBCC01026201;XM_005406227;XM_013505406;XM_013505407;XM_013505408;XM_013505409;XR_001231406 XP_005406284;XP_013360860;XP_013360861;XP_013360862;XP_013360863 MODEL 8748095 protein-coding Slc2a13 solute carrier family 2 member 13 ENCODES a protein that exhibits ATPase binding (ortholog); myo-inositol transmembrane transporter activity (ortholog); myo-inositol:proton symporter activity (ortholog); INVOLVED IN myo-inositol transport (ortholog); positive regulation of amyloid-beta formation (ortholog); ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN astrocyte end-foot (ortholog); cell body (ortholog); cell periphery (ortholog) NW_004955505 395380 664272 + 102003159 AGCD01064957;AGCD01064958;AGCD01064959;AGCD01064960;AGCD01064961;GBDK01214301;XM_013505919 XP_013361373 MODEL 9056963 pseudo LOC102006254 rab11 family-interacting protein 5-like NW_004955421 18213737 18219501 - 102006254 AGCD01022039 MODEL 10150962 ncrna LOC106146696 uncharacterized LOC106146696 NW_004955407 36367141 36369065 - 106146696 AGCD01007764;GBCB01033859;XR_001231247 MODEL 9003348 protein-coding LOC102021397 olfactory receptor 4K15-like NW_004955550 492121 493077 - 102021397 AGCD01072509;XM_005412131 XP_005412188 MODEL 9035208 pseudo LOC102008897 60S ribosomal protein L36a-like NW_004955550 1877604 1877922 - 102008897 AGCD01072592 MODEL 8990532 protein-coding LOC102026979 cytochrome b5 type B ENCODES a protein that exhibits enzyme activator activity (ortholog); heme binding (ortholog); nitrite reductase (NO-forming) activity (ortholog); INVOLVED IN nitric oxide biosynthetic process (ortholog); FOUND IN mitochondrial outer membrane (ortholog); nitric-oxide synthase complex (ortholog) NW_004955484 7239364 7270639 - 102026979 AGCD01058320;AGCD01058321;GBCE01098868;XM_005403554 XP_005403611 MODEL 8917527 protein-coding LOC102015378 uncharacterized LOC102015378 NW_004955456 15179606 15184141 + 102015378 AGCD01046663;GBCE01179145;XM_013520598;XR_262907;XR_262908 XP_013376052 MODEL 8822192 pseudo LOC102025222 luc7-like protein 3 NW_004955411 35479981 35483380 - 102025222 AGCD01012433 MODEL 8976574 protein-coding LOC102027646 chymotrypsinogen 2-like NW_004955484 2381607 2382524 - 102027646 AGCD01058113;GBDF01240166;XM_005403722 XP_005403779 MODEL 8728347 protein-coding Pgm3 phosphoglucomutase 3 ENCODES a protein that exhibits phosphoacetylglucosamine mutase activity (ortholog); INVOLVED IN hemopoiesis (ortholog); protein N-linked glycosylation (ortholog); protein O-linked glycosylation (ortholog); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; glycogen biosynthetic pathway; ASSOCIATED WITH cervical cancer (ortholog); genetic disease (ortholog); hyper IgE syndrome (ortholog) NW_004955411 10904022 10925613 - 102012839 AGCD01011796;AGCD01011797;GBDF01157543;GBDJ01317986;XM_013510758 XP_013366212 MODEL 8794280 protein-coding LOC102020606 HLA class II histocompatibility antigen, DRB1-11 beta chain-like NW_004955437 1262182 1269983 - 102020606 AGCD01034198;GBDJ01238235;XM_005389452 XP_005389509 MODEL 8989057 protein-coding Xkr7 XK related 7 FOUND IN plasma membrane (ortholog) NW_004955422 29015901 29024414 - 102006042 AGCD01023377;GBDF01135049;XM_013513843 XP_013369297 MODEL 8841178 protein-coding Spata32 spermatogenesis associated 32 ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN spermatogenesis (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog) NW_004955451 17896753 17907700 - 102026385 AGCD01043781;AGCD01043782;GBDF01008108;XM_005394574 XP_005394631 MODEL 8877881 pseudo LOC102008902 nucleolar protein 58 pseudogene NW_004955446 12111400 12115335 + 102008902 AGCD01040224;AGCD01040225 MODEL 39131318 protein-coding TMT1A thiol methyltransferase 1A 8782336 protein-coding LOC102023831 olfactory receptor 5M10-like NW_004955511 1726691 1727638 - 102023831 AGCD01066377;XM_005408240 XP_005408297 MODEL 10063032 ncrna LOC106146978 uncharacterized LOC106146978 NW_004955510 1223496 1224382 - 106146978 AGCD01066189;GBDF01285788;XR_001231665 MODEL 9020528 protein-coding LOC102003148 RNA-binding protein FUS NW_004955493 8027419 8038171 + 102003148 AGCD01061257;GBDJ01020436;GBDK01016818;XM_013504880;XM_013504881 XP_013360334;XP_013360335 MODEL 9007007 pseudo LOC102007361 uncharacterized LOC102007361 NW_004955515 1742608 1754797 - 102007361 AGCD01067234;AGCD01067235 MODEL 10336445 ncrna LOC106149266 uncharacterized LOC106149266 NW_004955441 19826125 19843413 + 106149266 AGCD01037380;GBCQ01063052;XR_001235322 MODEL 8756279 protein-coding Pofut4 protein O-fucosyltransferase 4 ENCODES a protein that exhibits fucosyltransferase activity (ortholog); peptide-O-fucosyltransferase activity (ortholog); INVOLVED IN N-glycan processing (ortholog); positive regulation of protein secretion (ortholog); ASSOCIATED WITH stomach cancer (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955437 18126165 18132874 - 102014710 AGCD01034775;AGCD01034776;AGCD01034777;GBDF01010401;GBDF01010402;XM_005389967 XP_005390024 MODEL 8790397 pseudo LOC102005914 shugoshin-like 1 pseudogene NW_004955465 13332971 13334196 - 102005914 AGCD01050600 MODEL 10107272 protein-coding LOC106146427 translation initiation factor IF-2-like NW_004955478 8357937 8359124 - 106146427 AGCD01056023;GBBH01177523;XM_013503198 XP_013358652 MODEL 9019314 pseudo LOC102006259 programmed cell death protein 5 pseudogene NW_004955502 7085665 7086085 - 102006259 AGCD01064429;XM_005406906 MODEL 8706190 protein-coding Kmt2b lysine methyltransferase 2B ENCODES a protein that exhibits histone H3K4 methyltransferase activity (ortholog); histone H3K4 monomethyltransferase activity (ortholog); unmethylated CpG binding (ortholog); INVOLVED IN DNA methylation-dependent constitutive heterochromatin formation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN histone methyltransferase complex (ortholog); MLL1/2 complex (ortholog); nucleus (ortholog) NW_004955468 2813183 2834326 - 102024207 AGCD01051838;GBCE01008533;GBCE01008553;XM_013522393;XM_013522395 XP_013377847;XP_013377849 MODEL 8883812 ncrna LOC102009257 uncharacterized LOC102009257 NW_004955460 11538025 11540811 + 102009257 AGCD01048633;GBDF01077791;XR_263059 MODEL 8884960 protein-coding Shmt1 serine hydroxymethyltransferase 1 ENCODES a protein that exhibits aldehyde-lyase activity (ortholog); amino acid binding (ortholog); glycine hydroxymethyltransferase activity (ortholog); INVOLVED IN 'de novo' pyrimidine nucleobase biosynthetic process (ortholog); cellular response to leukemia inhibitory factor (ortholog); cellular response to tetrahydrofolate (ortholog); PARTICIPATES IN carnitine biosynthetic pathway; dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; ASSOCIATED WITH Animal Disease Models (ortholog); breast cancer (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955478 10972791 11001535 + 102019598 AGCD01056156;AGCD01056157;GBDJ01273556;XM_005402276;XM_005402277;XM_013503178 XP_005402333;XP_005402334;XP_013358632 MODEL 10170929 protein-coding LOC106146299 leukocyte immunoglobulin-like receptor subfamily A member 5 NW_004955567 1322215 1323920 - 106146299 AGCD01074467;XM_013509220 XP_013364674 MODEL 8895606 protein-coding LOC102012002 probable N-acetyltransferase CML1 NW_004955424 12018064 12026229 + 102012002 AGCD01024589;GBCQ01036370;XM_005385547;XM_005385548;XM_005385549;XM_005385551;XM_013514658;XM_013514659;XM_013514660;XM_013514661 XP_005385604;XP_005385605;XP_005385606;XP_005385608;XP_013370112;XP_013370113;XP_013370114;XP_013370115 MODEL 8710271 pseudo LOC102028300 eukaryotic translation initiation factor 1A, X-chromosomal-like NW_004955482 8142443 8144293 + 102028300 AGCD01057506 MODEL 8954999 protein-coding Ifnlr1 interferon lambda receptor 1 INVOLVED IN defense response to virus (ortholog); mucosal immune response (ortholog); positive regulation of cellular respiration (ortholog); ASSOCIATED WITH psoriasis (ortholog); FOUND IN interleukin-28 receptor complex (ortholog) NW_004955452 4002389 4028193 - 102026180 AGCD01043962;AGCD01043963;GBCE01169046;XM_013519716;XM_013519717 XP_013375170;XP_013375171 MODEL 8712981 protein-coding Ndufa11 NADH:ubiquinone oxidoreductase subunit A11 ASSOCIATED WITH communication disorder (ortholog); mitochondrial complex I deficiency (ortholog); nuclear type mitochondrial complex I deficiency 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955495 3557016 3564999 + 102022306 AGCD01061862;GBDK01308518;XM_005405752 XP_005405809 MODEL 8717640 protein-coding LOC102025226 olfactory receptor 1468-like NW_004955467 13332532 13333473 + 102025226 AGCD01051671;XM_005399734 XP_005399791 MODEL 8830918 pseudo LOC102024134 eukaryotic translation initiation factor 5 pseudogene NW_004955424 14792124 14793737 + 102024134 AGCD01024660 MODEL 8814785 ncrna LOC102029379 uncharacterized LOC102029379 NW_004955464 4807352 4808524 + 102029379 AGCD01049995;GBDF01308124;XR_263196 MODEL 8726679 pseudo LOC102010047 nucleolar and spindle-associated protein 1 pseudogene NW_004955413 13435713 13437079 - 102010047 AGCD01014015 MODEL 39133506 snrna U4 U4 spliceosomal RNA 8824021 protein-coding Birc6 baculoviral IAP repeat containing 6 ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (ortholog); ubiquitin conjugating enzyme activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN labyrinthine layer development (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of extrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH adrenocortical carcinoma (ortholog); autism spectrum disorder (ortholog); cholangiocarcinoma (ortholog); FOUND IN endosome (ortholog); Golgi apparatus (ortholog); membrane (ortholog) NW_004955441 740299 923920 + 102009992 AGCD01036733;AGCD01036734;AGCD01036735;AGCD01036736;AGCD01036737;AGCD01036738;AGCD01036739;AGCD01036740;GBDF01124876;XM_013517560;XM_013517561 XP_013373014;XP_013373015 MODEL 8734597 protein-coding Slc2a2 solute carrier family 2 member 2 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); dehydroascorbic acid transmembrane transporter activity (ortholog); fructose transmembrane transporter activity (ortholog); INVOLVED IN carbohydrate utilization (ortholog); cellular response to fatty acid (ortholog); D-glucose transmembrane transport (ortholog); PARTICIPATES IN facilitative sugar transporter mediated glucose transport pathway; Fanconi syndrome pathway; forkhead class A signaling pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); diabetes mellitus (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border (ortholog) NW_004955420 1101769 1129672 - 102025012 AGCD01020568;XM_005382995 XP_005383052 MODEL 10316741 ncrna LOC106146697 uncharacterized LOC106146697 NW_004955492 860797 885753 + 106146697 AGCD01060645;AGCD01060646;AGCD01060647;AGCD01060648;GBDF01252103;XR_001231249 MODEL 9045366 ncrna LOC102018451 uncharacterized LOC102018451 NW_004955402 60136650 60151376 + 102018451 AGCD01001579;AGCD01001580;XR_259112 MODEL 8746777 pseudo LOC102030070 CCAAT/enhancer-binding protein gamma-like NW_004955475 12206217 12206681 - 102030070 AGCD01055184 MODEL 8789974 protein-coding Trpc4ap transient receptor potential cation channel subfamily C member 4 associated protein ENCODES a protein that exhibits phosphatase binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN hair follicle maturation (ortholog); protein ubiquitination (ortholog); ubiquitin-dependent protein catabolic process (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (ortholog); Cul4A-RING E3 ubiquitin ligase complex (ortholog); cytosol (ortholog) NW_004955422 26301937 26383464 + 102016719 AGCD01023284;AGCD01023285;AGCD01023286;AGCD01023287;AGCD01023288;GBDF01005507;XM_005384808;XM_005384809 XP_005384865;XP_005384866 MODEL 8814636 protein-coding LOC102021406 histone H2A INVOLVED IN mRNA processing (ortholog); nucleosome assembly (ortholog); FOUND IN chromosome (ortholog); euchromatin (ortholog); nucleosome (ortholog) NW_004955593 911641 911919 + 102021406 AGCD01076404;GBDF01010904;GBDJ01218416;XM_005414637 XP_005414694 MODEL 9048239 protein-coding LOC102025560 uncharacterized LOC102025560 NW_004955468 2975481 2992108 + 102025560 AGCD01051849;GBBH01136500;XM_005399979 XP_005400036 MODEL 9009728 protein-coding Pik3r6 phosphoinositide-3-kinase regulatory subunit 6 ENCODES a protein that exhibits 1-phosphatidylinositol-3-kinase regulator activity (ortholog); 1-phosphatidylinositol-4,5-bisphosphate 3-kinase activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); positive regulation of angiogenesis (ortholog); positive regulation of MAP kinase activity (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; insulin signaling pathway; FOUND IN membrane (ortholog); phosphatidylinositol 3-kinase complex, class IA (ortholog); phosphatidylinositol 3-kinase complex, class IB (ortholog) NW_004955467 8104242 8157637 + 102012079 AGCD01051444;GBCE01018656;XM_005399389;XM_005399391;XM_013522213 XP_005399446;XP_005399448;XP_013377667 MODEL 10123580 pseudo LOC106148073 protocadherin gamma-B2-like NW_004955415 12336155 12339910 - 106148073 AGCD01016187 MODEL 9040827 protein-coding LOC102004498 cytochrome P450 26A1 NW_004955425 371850 388364 - 102004498 AGCD01025182;GBDF01144580;XM_005385819;XM_005385820;XM_005385821;XM_013514753 XP_005385876;XP_005385877;XP_005385878;XP_013370207 MODEL 9062424 ncrna LOC102018076 uncharacterized LOC102018076 NW_004955413 26991201 26996200 + 102018076 AGCD01014489;AGCD01014490;GBCB01118470;XR_260115 MODEL 8939920 protein-coding LOC102026980 stimulated by retinoic acid gene 6 protein homolog NW_004955419 28069848 28121163 - 102026980 AGCD01020453;AGCD01020454;AGCD01020455;AGCD01020456;AGCD01020457;AGCD01020458;AGCD01020459;GBDF01250558;XM_005382854;XM_005382855;XM_013513306;XM_013513307;XM_013513308;XM_013513309;XM_013513310 XP_005382911;XP_005382912;XP_013368760;XP_013368761;XP_013368762;XP_013368763;XP_013368764 MODEL 8722008 protein-coding LOC102019611 zinc finger protein 260-like NW_004955495 925423 929850 - 102019611 AGCD01061661;GBDJ01370795;GBDK01143905;XM_013505071 XP_013360525 MODEL 9052817 protein-coding LOC102012414 cytochrome P450 4B1 ENCODES a protein that exhibits heterocyclic compound binding (ortholog); medium-chain fatty acid omega-1 hydroxylase activity (ortholog); medium-chain fatty acid omega-hydroxylase activity (ortholog); INVOLVED IN biphenyl metabolic process (ortholog); PARTICIPATES IN phase I biotransformation pathway via cytochrome P450; ASSOCIATED WITH autism spectrum disorder (ortholog); chronic obstructive pulmonary disease (ortholog); urinary bladder cancer (ortholog) NW_004955464 11539467 11556519 - 102012414 AGCD01050155;GBDF01188215;XM_005398649;XM_005398650 XP_005398706;XP_005398707 MODEL 10190715 protein-coding LOC106150089 uncharacterized LOC106150089 NW_004955464 4591900 4595081 - 106150089 AGCD01049992;GBDK01281559;XM_013521668;XM_013521669;XM_013521670;XR_001236691 XP_013377122;XP_013377123;XP_013377124 MODEL 8814120 pseudo LOC102004499 peptidyl-prolyl cis-trans isomerase A pseudogene NW_004955500 2984102 2984589 + 102004499 AGCD01063724 MODEL 8991466 protein-coding Tet3 tet methylcytosine dioxygenase 3 ENCODES a protein that exhibits DNA 5-methylcytosine dioxygenase activity (ortholog); methyl-CpG binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN epigenetic programing of male pronucleus (ortholog); positive regulation of gene expression via chromosomal CpG island demethylation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN DNA modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Beck-Fahrner Syndrome (ortholog); Developmental Disease (ortholog); FOUND IN cytoplasm (ortholog); female pronucleus (ortholog); male pronucleus (ortholog) NW_004955424 11612124 11722130 - 102006148 AGCD01024571;AGCD01024572;AGCD01024573;GBDK01361608;XM_005385528;XM_005385529;XM_005385532;XM_013514633;XM_013514634;XM_013514636 XP_005385585;XP_005385586;XP_005385589;XP_013370087;XP_013370088;XP_013370090 MODEL 10338845 ncrna LOC106146554 uncharacterized LOC106146554 NW_004955484 6713926 6802188 - 106146554 AGCD01058288;AGCD01058289;AGCD01058290;AGCD01058291;AGCD01058292;GBDF01180021;XR_001231042 MODEL 8777378 ncrna LOC102003152 uncharacterized LOC102003152 NW_004955495 7582405 7586650 + 102003152 AGCD01062154;XR_264168 MODEL 8965716 pseudo LOC102028305 syntaxin-7 pseudogene NW_004955490 8695998 8696782 + 102028305 AGCD01060291;XR_264029 MODEL 10100028 ncrna LOC106146428 uncharacterized LOC106146428 NW_004955402 43057405 43060665 + 106146428 AGCD01001061;GBDK01101448;XR_001230857 MODEL 9017082 protein-coding Pabpn1l PABPN1 like, cytoplasmic ENCODES a protein that exhibits poly(A) binding (ortholog); RNA binding (ortholog); INVOLVED IN maternal-to-zygotic transition of gene expression (ortholog); negative regulation of protein ubiquitination (ortholog); negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process (ortholog); FOUND IN cytoplasm (ortholog) NW_004955541 2718076 2720322 - 102006496 AGCD01071423;XM_005411024 XP_005411081 MODEL 8997938 protein-coding Erich5 glutamate rich 5 NW_004955417 13776609 13804241 + 102009607 AGCD01018191;GBDI01354833;XM_005381845;XM_005381846 XP_005381902;XP_005381903 MODEL 8878070 pseudo LOC102015382 olfactory receptor 12-like NW_004955458 2288891 2292223 + 102015382 AGCD01047223 MODEL 626189202 snorna SNORD1B small nucleolar RNA, C/D box 1B 8721613 ncrna LOC102003450 uncharacterized LOC102003450 NW_004955485 6812985 6814556 - 102003450 AGCD01058629;GBDF01041975;XR_263914 MODEL 8974935 pseudo LOC102020607 rho guanine nucleotide exchange factor 7 pseudogene NW_004955537 2763934 2772232 - 102020607 AGCD01070938 MODEL 8855321 protein-coding Pgm5 phosphoglucomutase 5 ENCODES a protein that exhibits phosphoglucomutase activity (ortholog); ASSOCIATED WITH systemic juvenile rheumatoid arthritis (ortholog); FOUND IN adherens junction (ortholog); cell-substrate junction (ortholog); costamere (ortholog) NW_004955434 4489054 4670879 - 102009869 AGCD01032163;AGCD01032164;AGCD01032165;AGCD01032166;GBBH01126452;GBCB01073451;XM_005388582 XP_005388639 MODEL 8917389 protein-coding Srarp steroid receptor associated and regulated protein ENCODES a protein that exhibits nuclear estrogen receptor binding (ortholog); INVOLVED IN positive regulation of intracellular estrogen receptor signaling pathway (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955527 2229664 2232201 - 102006605 AGCD01069425;GBCQ01152897;XM_005409853 XP_005409910 MODEL 8794075 protein-coding LOC102012004 cx9C motif-containing protein 4-like NW_004955425 2298142 2298943 - 102012004 AGCD01025257;GBDF01080910;XM_005385839 XP_005385896 MODEL 8920562 protein-coding Xkr8 XK related 8 ENCODES a protein that exhibits phospholipid scramblase activity (ortholog); INVOLVED IN engulfment of apoptotic cell (ortholog); neutrophil clearance (ortholog); phosphatidylserine exposure on apoptotic cell surface (ortholog); FOUND IN plasma membrane (ortholog) NW_004955452 7141088 7148571 + 102018681 AGCD01044136;AGCD01044137;GBBH01041411;GBDF01195794;XM_013519543 XP_013374997 MODEL 8729233 protein-coding Lasp1 LIM and SH3 protein 1 ENCODES a protein that exhibits actin filament binding (ortholog); monoatomic ion transmembrane transporter activity (ortholog); INVOLVED IN monoatomic ion transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Endometrial Neoplasms (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cortical actin cytoskeleton (ortholog); cytoplasm (ortholog); focal adhesion (ortholog) NW_004955451 13910891 13932506 + 102021409 AGCD01043514;GBCB01043509;GBDF01119073;XM_005394289 XP_005394346 MODEL 9002495 protein-coding Tmt1a thiol methyltransferase 1A ENCODES a protein that exhibits mRNA m(6)A methyltransferase activity (ortholog); RNA methyltransferase activity (ortholog); thiol S-methyltransferase activity (ortholog); INVOLVED IN lncRNA processing (ortholog); odontogenesis (ortholog); osteoblast differentiation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); endometriosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); lipid droplet (ortholog); membrane (ortholog) NW_004955547 1356530 1365189 + 102019437 AGCD01072216;AGCD01072217;AGCD01072218;GBDF01045836;XM_013508460 XP_013363914 MODEL 8875989 pseudo LOC102023833 ubiquitin carboxyl-terminal hydrolase 1-like NW_004955431 15686481 15689111 - 102023833 AGCD01030364 MODEL 10082218 ncrna LOC106146979 uncharacterized LOC106146979 NW_004955510 3888504 3918505 - 106146979 AGCD01066252;GBDF01210446;XR_001231668 MODEL 8779865 pseudo LOC102007362 ATM interactor pseudogene NW_004955516 35910 38266 + 102007362 AGCD01067367 MODEL 8704955 ncrna LOC102029380 uncharacterized LOC102029380 NW_004955465 12004627 12005993 - 102029380 AGCD01050539;GBDF01208481;XR_263271 MODEL 10317786 ncrna LOC106146698 uncharacterized LOC106146698 NW_004955407 36612270 36619403 - 106146698 AGCD01007772;GBDF01015495;XR_001231251;XR_001231252;XR_001231253 MODEL 9026807 protein-coding LOC102005915 translation initiation factor IF-2-like NW_004955465 13253449 13255976 - 102005915 AGCD01050595;GBDJ01330279;XM_005399010 XP_005399067 MODEL 8701664 ncrna LOC102009258 uncharacterized LOC102009258 NW_004955410 7298409 7299909 + 102009258 AGCD01010712;GBDK01133796;XR_259823;XR_259824 MODEL 8742618 protein-coding Pogk pogo transposable element derived with KRAB domain FOUND IN nucleoplasm (ortholog) NW_004955462 10075834 10089954 - 102028390 AGCD01049351;AGCD01049352;GBBH01101820;GBBH01101821;XM_005398238 XP_005398295 MODEL 8761929 protein-coding LOC102030072 translation initiation factor IF-2-like NW_004955416 7798002 7806866 + 102030072 AGCD01017013;GBDF01242158;XM_005381270 XP_005381327 MODEL 8925148 pseudo LOC102021413 40S ribosomal protein S16 pseudogene NW_004955404 19244236 19244674 + 102021413 AGCD01003639 MODEL 8946749 protein-coding LOC102027648 C-C chemokine receptor type 5 NW_004955420 25629741 25634349 - 102027648 AGCD01021367;GBBH01044145;XM_005383448;XM_013513480;XM_013513481 XP_005383505;XP_013368934;XP_013368935 MODEL 8997578 protein-coding Shmt2 serine hydroxymethyltransferase 2 ENCODES a protein that exhibits amino acid binding (ortholog); chromatin binding (ortholog); glycine hydroxymethyltransferase activity (ortholog); INVOLVED IN formate biosynthetic process (ortholog); glycine biosynthetic process (ortholog); glycine metabolic process (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; folate cycle metabolic pathway; ASSOCIATED WITH genetic disease (ortholog); lung non-small cell carcinoma (ortholog); neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities (ortholog); FOUND IN BRISC complex (ortholog); cytoplasm (ortholog); mitochondrial inner membrane (ortholog) NW_004955458 4957614 4962691 + 102022166 AGCD01047446;GBCQ01036093;XM_005397350 XP_005397407 MODEL 10198601 protein-coding LOC106146300 olfactory receptor 12-like NW_004955542 1237637 1238688 - 106146300 AGCD01071496;XM_013508126 XP_013363580 MODEL 8952537 protein-coding LOC102025562 T-cell surface glycoprotein CD1b2-like NW_004955468 10161635 10163640 + 102025562 AGCD01052068;GBDI01000183;XM_005400311 XP_005400368 MODEL 8812881 protein-coding LOC102018077 WD repeat-containing protein 87-like NW_004955468 2223885 2241409 - 102018077 AGCD01051804;GBBH01142412;XM_013522301;XM_013522302;XM_013522303 XP_013377755;XP_013377756;XP_013377757 MODEL 10095163 ncrna LOC106149267 uncharacterized LOC106149267 NW_004955441 19865939 19872060 - 106149267 AGCD01037380;XR_001235323 MODEL 8869956 ncrna LOC102024140 uncharacterized LOC102024140 NW_004955504 398960 407704 + 102024140 AGCD01064819;GBDK01412395;XR_001231548;XR_001231549;XR_264269 MODEL 8849034 pseudo LOC102012421 5-azacytidine-induced protein 2 pseudogene NW_004955414 22550353 22553184 + 102012421 AGCD01015461 MODEL 39133507 snrna U4 U4 spliceosomal RNA 8786155 protein-coding LOC102006262 60S acidic ribosomal protein P1-like NW_004955506 3889447 3890523 - 102006262 AGCD01065321;XM_005407374;XM_005407375 XP_005407431;XP_005407432 MODEL 8702337 protein-coding Pgp phosphoglycolate phosphatase ENCODES a protein that exhibits ADP phosphatase activity (ortholog); magnesium ion binding (ortholog); phosphoglycolate phosphatase activity (ortholog); INVOLVED IN glycerol biosynthetic process (ortholog); glycerophospholipid metabolic process (ortholog); negative regulation of gluconeogenesis (ortholog) NW_004955442 15051149 15053123 + 102011702 AGCD01037855;AGCD01037856;GBBH01186797;GBDF01006244;XM_013517733 XP_013373187 MODEL 8838835 protein-coding Scamp3 secretory carrier membrane protein 3 ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN response to retinoic acid (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955545 1710755 1715739 - 102004324 AGCD01071869;GBCE01055768;XM_005411595 XP_005411652 MODEL 8792434 protein-coding Birc7 baculoviral IAP repeat containing 7 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN lens development in camera-type eye (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of tumor necrosis factor-mediated signaling pathway (ortholog); ASSOCIATED WITH adrenocortical carcinoma (ortholog); bladder urothelial carcinoma (ortholog); breast carcinoma (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955528 919246 922581 - 102010730 AGCD01069547;XM_013507431 XP_013362885 MODEL 9005910 ncrna LOC102028306 uncharacterized LOC102028306 NW_004955422 4451817 4465858 + 102028306 AGCD01022542;GBDF01234640;XR_260852 MODEL 8992646 protein-coding Tmt1b thiol methyltransferase 1B ENCODES a protein that exhibits S-adenosylmethionine-dependent methyltransferase activity (ortholog); thiol S-methyltransferase activity (ortholog); ASSOCIATED WITH ovarian carcinoma (ortholog) NW_004955458 3319840 3322777 + 102019571 AGCD01047293;AGCD01047294;GBDK01273978;XM_005397254 XP_005397311 MODEL 8972342 protein-coding Kmt2c lysine methyltransferase 2C ENCODES a protein that exhibits histone H3K4 methyltransferase activity (ortholog); histone H3K4 monomethyltransferase activity (ortholog); histone methyltransferase activity (ortholog); INVOLVED IN eyelid development in camera-type eye (ortholog); multicellular organism growth (ortholog); positive regulation of fibroblast proliferation (ortholog); PARTICIPATES IN DNA modification pathway; histone modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); adenocarcinoma (ortholog); adenoid cystic carcinoma (ortholog); FOUND IN cytosol (ortholog); histone methyltransferase complex (ortholog); MLL3/4 complex (ortholog) NW_004955491 6245408 6420535 - 102012440 AGCD01060523;AGCD01060524;AGCD01060525;AGCD01060526;AGCD01060527;AGCD01060528;GBDI01116876;GBDI01135468;XM_013504577;XM_013504578;XM_013504579 XP_013360031;XP_013360032;XP_013360033 MODEL 9026766 protein-coding Trpc5 transient receptor potential cation channel subfamily C member 5 ENCODES a protein that exhibits actin binding (ortholog); actinin binding (ortholog); ATPase binding (ortholog); INVOLVED IN negative regulation of dendrite morphogenesis (ortholog); neuron apoptotic process (ortholog); neuron differentiation (ortholog); ASSOCIATED WITH Albuminuria (ortholog); dilated cardiomyopathy 1H (ortholog); hypertension (ortholog); FOUND IN calcium channel complex (ortholog); cation channel complex (ortholog); dendrite (ortholog) NW_004955490 3777756 4057275 + 102029978 AGCD01060174;AGCD01060175;AGCD01060176;AGCD01060177;AGCD01060178;AGCD01060179;AGCD01060180;XM_005404633;XM_013504508 XP_005404690;XP_013359962 MODEL 8735977 ncrna LOC102026613 uncharacterized LOC102026613 NW_004955461 28739 39583 - 102026613 AGCD01048788;XR_001236558;XR_001236559 MODEL 10127671 protein-coding LOC106148074 translation initiation factor IF-2-like NW_004955415 33038372 33040007 - 106148074 AGCD01016746;GBBH01107327;GBDK01010652;XM_013512174 XP_013367628 MODEL 8714102 protein-coding Spata33 spermatogenesis associated 33 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN fertilization (ortholog); flagellated sperm motility (ortholog); intracellular protein localization (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955541 3223552 3232837 + 102012026 AGCD01071440;GBDI01027080;XM_005411046;XM_005411047;XM_013507946 XP_005411103;XP_005411104;XP_013363400 MODEL 9064359 protein-coding LOC102008903 prolactin-like NW_004955576 90664 96906 - 102008903 AGCD01075255;XM_005413945 XP_005414002 MODEL 8798180 protein-coding Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing ENCODES a protein that exhibits 1-phosphatidylinositol-3-phosphate 5-kinase activity (ortholog); 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); 1-phosphatidylinositol-5-kinase activity (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 3,5-bisphosphate metabolic process (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); artery development (ortholog); PARTICIPATES IN inositol metabolic pathway; phosphoinositide metabolic pathway; ASSOCIATED WITH Crohn's disease (ortholog); Fleck corneal dystrophy (ortholog); genetic disease (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955457 6749226 6841855 - 102005112 AGCD01046851;AGCD01046852;AGCD01046853;AGCD01046854;GBCQ01174522;XM_005396961;XM_005396963;XM_005396964;XM_013520753;XM_013520754;XM_013520755;XM_013520756;XM_013520757;XM_013520758;XM_013520759 XP_005397018;XP_005397020;XP_005397021;XP_013376207;XP_013376208;XP_013376209;XP_013376210;XP_013376211;XP_013376212;XP_013376213 MODEL 8899605 pseudo LOC102030076 serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform pseudogene NW_004955416 15850529 15852392 - 102030076 AGCD01017345 MODEL 8846742 pseudo LOC102026982 coiled-coil domain-containing protein 112-like NW_004955484 2263970 2269590 - 102026982 AGCD01058096;AGCD01058097;AGCD01058098 MODEL 10080999 protein-coding Ndufa12 NADH:ubiquinone oxidoreductase subunit A12 INVOLVED IN mitochondrial ATP synthesis coupled electron transport (ortholog); ASSOCIATED WITH genetic disease (ortholog); Leigh disease (ortholog); nuclear type mitochondrial complex I deficiency 23 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955405 31607182 31621538 - 106149466 AGCD01005299;GBBH01030741;GBDF01052506;XM_013518426 XP_013373880 MODEL 8970631 ncrna LOC102003456 uncharacterized LOC102003456 NW_004955492 6404109 6413616 + 102003456 AGCD01060766;GBDF01016640;XR_001231259;XR_001231260;XR_264055 MODEL 8916717 protein-coding Ifrd1 interferon related developmental regulator 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN adipose tissue development (ortholog); fat cell differentiation (ortholog); glial cell proliferation (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Charcot-Marie-Tooth disease (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955410 16176431 16222006 + 102015613 AGCD01010950;AGCD01010951;GBDK01098501;XM_005377320;XM_013510565;XM_013510566;XM_013510567 XP_005377377;XP_013366019;XP_013366020;XP_013366021 MODEL 9060382 protein-coding LOC102025227 cytochrome c oxidase subunit 6B1 INVOLVED IN substantia nigra development (ortholog); ASSOCIATED WITH cytochrome-c oxidase deficiency disease (ortholog); genetic disease (ortholog); mitochondrial complex IV deficiency nuclear type 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955468 2884958 2891952 - 102025227 AGCD01051842;GBDI01012604;XM_005399978 XP_005400035 MODEL 8714236 protein-coding LOC102019614 olfactory receptor 10T2-like NW_004955495 8054019 8062946 - 102019614 AGCD01062177;XM_005406177 XP_005406234 MODEL 8946843 pseudo LOC102004504 14-3-3 protein theta pseudogene NW_004955429 23815798 23816541 + 102004504 AGCD01029080;XM_005387222 MODEL 8760612 protein-coding LOC102018453 protocadherin alpha-11 NW_004955611 320712 330219 - 102018453 AGCD01077161;AGCD01077162;AGCD01077163;XM_005414947 XP_005415004 MODEL 9002014 pseudo LOC102023835 translationally-controlled tumor protein pseudogene NW_004955513 2626844 2627361 - 102023835 AGCD01066883 MODEL 8740372 protein-coding Lat linker for activation of T cells ENCODES a protein that exhibits molecular condensate scaffold activity (ortholog); protein kinase binding (ortholog); signaling adaptor activity (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); gene expression (ortholog); homeostasis of number of cells (ortholog); PARTICIPATES IN Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); IgG4-related disease (ortholog); immunodeficiency 52 (ortholog); FOUND IN cell-cell junction (ortholog); COP9 signalosome (ortholog); immunological synapse (ortholog) NW_004955493 6501504 6506089 - 102011210 AGCD01061118;GBBH01031283;XM_005405151;XM_013504841 XP_005405208;XP_013360295 MODEL 8816460 protein-coding LOC102007363 monocarboxylate transporter 1-like NW_004955435 16195389 16213361 - 102007363 AGCD01033300;AGCD01033301;GBDF01134218;XM_005388971 XP_005389028 MODEL 39133508 snrna U4 U4 spliceosomal RNA 8745521 ncrna LOC102009260 uncharacterized LOC102009260 NW_004955463 9987660 9990965 - 102009260 AGCD01049803;GBDF01112751;XR_263165 MODEL 626189134 snorna SNORD1C small nucleolar RNA, C/D box 1C 8954683 protein-coding Poglut1 protein O-glucosyltransferase 1 ENCODES a protein that exhibits EGF-domain serine glucosyltransferase activity (ortholog); EGF-domain serine xylosyltransferase activity (ortholog); glucosyltransferase activity (ortholog); INVOLVED IN axial mesoderm development (ortholog); circulatory system development (ortholog); muscle tissue development (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2Z (ortholog); Dowling-Degos disease (ortholog); Dowling-Degos Disease 4 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum lumen (ortholog) NW_004955427 19188512 19206050 + 102018417 AGCD01027359;AGCD01027360;GBDJ01299744;XM_005386444 XP_005386501 MODEL 10161947 ncrna LOC106150090 uncharacterized LOC106150090 NW_004955464 4595196 4600399 - 106150090 AGCD01049992;GBCE01177987;XR_001236692 MODEL 8785930 pseudo LOC102020612 60S ribosomal protein L6-like NW_004955441 231433 232280 + 102020612 AGCD01036691 MODEL 10175386 ncrna LOC106146555 uncharacterized LOC106146555 NW_004955484 8890443 8896039 - 106146555 AGCD01058400;XR_001231044 MODEL 10182833 protein-coding LOC106146980 uncharacterized LOC106146980 NW_004955510 436710 439617 - 106146980 AGCD01066148;GBDF01193278;GBDK01378592;XM_013506325 XP_013361779 MODEL 8942773 pseudo LOC102026985 pre-mRNA-splicing factor SPF27 pseudogene NW_004955490 6859427 6860069 - 102026985 AGCD01060240 MODEL 9008564 pseudo LOC102003467 laccase domain-containing protein 1 pseudogene NW_004955425 25984730 25986065 - 102003467 AGCD01025940 MODEL 8718174 protein-coding Xkr9 XK related 9 ENCODES a protein that exhibits phospholipid scramblase activity (ortholog); INVOLVED IN phosphatidylserine exposure on apoptotic cell surface (ortholog); FOUND IN plasma membrane (ortholog) NW_004955444 9027662 9059911 - 102029130 AGCD01038953;AGCD01038954;AGCD01038955;AGCD01038956;GBCQ01014012;XM_005392101;XM_005392102;XM_013518143;XM_013518144;XM_013518145 XP_005392158;XP_005392159;XP_013373597;XP_013373598;XP_013373599 MODEL 9032398 ncrna LOC102012422 uncharacterized LOC102012422 NW_004955474 1783853 1789261 + 102012422 AGCD01054268;GBDK01242651;XR_263587 MODEL 8924822 protein-coding LOC102029381 vomeronasal type-1 receptor 4-like NW_004955465 12972566 12973516 + 102029381 AGCD01050573;XM_005399001 XP_005399058 MODEL 10364376 ncrna LOC106146699 uncharacterized LOC106146699 NW_004955492 948990 957201 + 106146699 AGCD01060651;AGCD01060652;GBDK01176053;XR_001231255 MODEL 8720375 pseudo LOC102005916 COMM domain-containing protein 8 pseudogene NW_004955466 2360352 2361351 - 102005916 AGCD01050734 MODEL 9040459 pseudo LOC102015385 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955460 13496374 13531311 - 102015385 AGCD01048692;AGCD01048693;AGCD01048694;AGCD01048695;AGCD01048696;AGCD01048697 MODEL 8806191 protein-coding Erich6 glutamate rich 6 FOUND IN nucleus (ortholog) NW_004955448 1827296 1860699 - 102025958 AGCD01041270;GBDF01054023;XM_005393013;XM_013518579 XP_005393070;XP_013374033 MODEL 9064278 pseudo LOC102006264 nucleophosmin pseudogene NW_004955511 3225794 3227751 + 102006264 AGCD01066450 MODEL 8772389 protein-coding Pacc1 proton activated chloride channel 1 ENCODES a protein that exhibits pH-gated chloride channel activity (ortholog); INVOLVED IN chloride transport (ortholog); FOUND IN plasma membrane (ortholog) NW_004955406 5036167 5058189 + 102021304 AGCD01005710;AGCD01005711;GBDF01127264;XM_005374743;XM_013520154 XP_005374800;XP_013375608 MODEL 8867840 protein-coding Scamp5 secretory carrier membrane protein 5 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN negative regulation of endocytosis (ortholog); positive regulation of calcium ion-dependent exocytosis (ortholog); positive regulation of cytokine production (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal recessive intellectual developmental disorder 41 (ortholog); basal cell carcinoma (ortholog); FOUND IN Golgi membrane (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955450 2986522 3009655 - 102004766 AGCD01042416;AGCD01042417;AGCD01042418;GBDK01377853;XM_005393526 XP_005393583 MODEL 10136510 protein-coding LOC106146302 olfactory receptor 8H1-like NW_004955511 1127431 1136873 + 106146302 AGCD01066358;XM_013506366 XP_013361820 MODEL 8710234 pseudo LOC102026615 poly(rC)-binding protein 2 pseudogene NW_004955462 2702918 2704104 + 102026615 AGCD01049179;XR_263137 MODEL 8727968 protein-coding LOC102027650 NACHT, LRR and PYD domains-containing protein 3-like NW_004955490 7930373 7968806 - 102027650 AGCD01060269;AGCD01060270;GBDF01123910;XM_013504511;XM_013504512;XM_013504513 XP_013359965;XP_013359966;XP_013359967 MODEL 9024104 pseudo LOC102012006 RWD domain-containing protein 1-like NW_004955502 2548815 2559921 - 102012006 AGCD01064301 MODEL 8744163 protein-coding LOC102010049 olfactory receptor 52H1-like NW_004955414 21628748 21631134 + 102010049 AGCD01015424;XM_005380100 XP_005380157 MODEL 8700440 protein-coding Srbd1 S1 RNA binding domain 1 FOUND IN chromosome (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955441 12374940 12642295 - 102009549 AGCD01037121;AGCD01037122;AGCD01037123;AGCD01037124;AGCD01037125;AGCD01037126;AGCD01037127;AGCD01037128;AGCD01037129;AGCD01037130;AGCD01037131;GBCB01074860;XM_013517546;XM_013517547;XM_013517548;XM_013517549;XM_013517550;XM_013517551;XM_013517552 XP_013373000;XP_013373001;XP_013373002;XP_013373003;XP_013373004;XP_013373005;XP_013373006 MODEL 9028067 protein-coding LOC102030081 WW domain-binding protein 11-like NW_004955483 314352 318814 + 102030081 AGCD01057606;GBDF01153765;XM_005403421 XP_005403478 MODEL 8788695 protein-coding Slc2a4 solute carrier family 2 member 4 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); D-glucose uniporter activity (ortholog); INVOLVED IN amylopectin biosynthetic process (ortholog); brown fat cell differentiation (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN facilitative sugar transporter mediated glucose transport pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Cardiomegaly (ortholog); congestive heart failure (ortholog); FOUND IN cell surface (ortholog); clathrin-coated pit (ortholog); clathrin-coated vesicle (ortholog) NW_004955467 9630304 9636005 - 102022580 AGCD01051520;GBCB01005958;XM_005399526 XP_005399583 MODEL 8941921 protein-coding Pilra paired immunoglobin like type 2 receptor alpha INVOLVED IN signal transduction (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog) NW_004955573 553631 560301 - 102024516 AGCD01074991;GBDF01110644;GBDK01074242;XM_013509477 XP_013364931 MODEL 8874633 protein-coding Tex10 testis expressed 10 FOUND IN MLL1 complex (ortholog); nucleus (ortholog); rixosome complex (ortholog) NW_004955419 25382222 25445492 + 102012760 AGCD01020382;AGCD01020383;AGCD01020384;AGCD01020385;GBDF01046141;XM_005382811;XM_005382812;XM_005382813;XM_005382814 XP_005382868;XP_005382869;XP_005382870;XP_005382871 MODEL 10191111 pseudo LOC102018079 Ig heavy chain V-I region 5-like NW_004955470 851205 851707 - 102018079 AGCD01052624 MODEL 10305045 ncrna LOC106149268 uncharacterized LOC106149268 NW_004955405 11390205 11392809 - 106149268 AGCD01004833;GBDJ01391579;XR_001235324 MODEL 8899671 protein-coding LOC102003153 CD70 antigen-like NW_004955495 2876196 2880324 + 102003153 AGCD01061808;GBDF01041568;XM_013505052 XP_013360506 MODEL 8749979 pseudo LOC102025229 small EDRK-rich factor 1 pseudogene NW_004955468 10128117 10128305 - 102025229 AGCD01052067;XM_005400310 MODEL 9027605 protein-coding Poglut2 protein O-glucosyltransferase 2 ENCODES a protein that exhibits EGF-domain serine glucosyltransferase activity (ortholog); EGF-domain serine xylosyltransferase activity (ortholog); UDP-glucosyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation via glucose (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog); nucleoplasm (ortholog) NW_004955404 8358542 8374216 + 102030378 AGCD01003351;GBDJ01275469;XM_005374028 XP_005374085 MODEL 8722502 pseudo LOC102007365 double-stranded RNA-binding protein Staufen homolog 1 pseudogene NW_004955530 1457860 1459504 - 102007365 AGCD01069884;XR_264702 MODEL 8868165 ncrna LOC102021414 uncharacterized LOC102021414 NW_004955405 9213975 9218444 + 102021414 AGCD01004765;GBCB01021521;XR_259365 MODEL 8971570 protein-coding Shoc1 shortage in chiasmata 1 ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN reciprocal meiotic recombination (ortholog); resolution of meiotic recombination intermediates (ortholog); synaptonemal complex assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); male infertility (ortholog); spermatogenic failure 75 (ortholog); FOUND IN chromosome (ortholog); condensed nuclear chromosome (ortholog) NW_004955419 15563949 15644502 + 102008317 AGCD01020083;AGCD01020084;GBDF01052150;XM_005382715;XM_005382716;XM_005382717 XP_005382772;XP_005382773;XP_005382774 MODEL 8776073 protein-coding Trpc5os TRPC5 opposite strand NW_004955490 3952565 3981690 - 102029636 AGCD01060178;AGCD01060179;GBDF01209797;XM_005404632;XM_013504509 XP_005404689;XP_013359963 MODEL 39133509 snrna U4 U4 spliceosomal RNA 10111440 ncrna LOC106148075 uncharacterized LOC106148075 NW_004955415 22029930 22043919 + 106148075 AGCD01016523;AGCD01016524;GBDK01372453;XR_001233202 MODEL 8814366 protein-coding Kmt2d lysine methyltransferase 2D ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); histone H3K4 methyltransferase activity (ortholog); histone H3K4 monomethyltransferase activity (ortholog); INVOLVED IN heterochromatin formation (ortholog); in utero embryonic development (ortholog); oocyte growth (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal dominant intellectual developmental disorder 26 (ortholog); FOUND IN MLL3/4 complex (ortholog); nucleus (ortholog) NW_004955500 7850782 7891703 - 102012005 AGCD01063954;AGCD01063955;GBBH01197901;GBDI01132691;XM_013505675;XM_013505676;XM_013505677;XM_013505678;XM_013505679 XP_013361129;XP_013361130;XP_013361131;XP_013361132;XP_013361133 MODEL 9040250 ncrna LOC102008904 uncharacterized LOC102008904 NW_004955580 1286792 1287412 - 102008904 AGCD01075652;GBDK01422065;XR_265090 MODEL 10122872 ncrna LOC106150091 uncharacterized LOC106150091 NW_004955464 1044234 1081179 - 106150091 AGCD01049944;GBCE01039814;XR_001236697 MODEL 9024193 protein-coding Ndufa13 NADH:ubiquinone oxidoreductase subunit A13 INVOLVED IN cellular response to interferon-beta (ortholog); cellular response to retinoic acid (ortholog); extrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH cerebral infarction (ortholog); genetic disease (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog) NW_004955524 2426604 2433682 - 102014483 AGCD01068817;AGCD01068818;GBDF01008366;XM_013507297;XM_013507298 XP_013362751;XP_013362752 MODEL 8854010 protein-coding LOC102025565 olfactory receptor 51G2-like NW_004955414 20908881 20909840 - 102025565 AGCD01015395;XM_005380069 XP_005380126 MODEL 9058790 protein-coding LOC102019616 melanoma-associated antigen 10-like NW_004955498 2708546 2709343 - 102019616 AGCD01062827;XM_005406472 XP_005406529 MODEL 9038631 pseudo LOC102024142 TATA box-binding protein-associated factor RNA polymerase I subunit D pseudogene NW_004955505 4170938 4174564 - 102024142 AGCD01065092 MODEL 8701983 pseudo LOC102026622 olfactory receptor 150-like NW_004955412 24978525 24979450 + 102026622 AGCD01013133 MODEL 9012888 ncrna LOC102023837 uncharacterized LOC102023837 NW_004955522 920670 928537 - 102023837 AGCD01068353;GBDF01147299;XR_264612 MODEL 8871873 protein-coding LOC102028309 olfactory receptor 4A15-like NW_004955422 75740 76657 + 102028309 AGCD01022393;XM_005384926 XP_005384983 MODEL 9068178 pseudo LOC102018080 olfactory receptor 51F2-like NW_004955414 20321335 20322268 + 102018080 AGCD01015368 MODEL 9023522 protein-coding Pgpep1 pyroglutamyl-peptidase I ENCODES a protein that exhibits peptidase activity (ortholog); INVOLVED IN protein catabolic process (ortholog); ASSOCIATED WITH prostate cancer (ortholog) NW_004955524 3138393 3148321 - 102010515 AGCD01068859;GBDF01083374;GBDK01021696;XM_013507332 XP_013362786 MODEL 10255976 protein-coding LOC106146981 uncharacterized LOC106146981 NW_004955510 5953614 5957245 - 106146981 AGCD01066297;GBDJ01004153;XM_013506327;XM_013506328 XP_013361781;XP_013361782 MODEL 9061084 protein-coding Xkrx XK related X-linked NW_004955503 7037200 7066070 - 102023378 AGCD01064776;AGCD01064777;AGCD01064778;GBDI01286611;XM_005406943 XP_005407000 MODEL 8841514 protein-coding Tmtc1 transmembrane O-mannosyltransferase targeting cadherins 1 ENCODES a protein that exhibits dolichyl-phosphate-mannose-protein mannosyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation via mannose (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955505 5200900 5454785 + 102014379 AGCD01065147;AGCD01065148;AGCD01065149;GBDK01128179;XM_013505922 XP_013361376 MODEL 9062988 protein-coding Lat2 linker for activation of T cells family member 2 ENCODES a protein that exhibits SH2 domain binding (ortholog); INVOLVED IN B cell activation (ortholog); B cell receptor signaling pathway (ortholog); calcium-mediated signaling (ortholog); ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Disease Progression (ortholog); Experimental Leukemia (ortholog); FOUND IN membrane raft (ortholog); plasma membrane (ortholog) NW_004955456 13674190 13688611 - 102012928 AGCD01046610;GBDK01008866;XM_013520622;XM_013520623;XM_013520624 XP_013376076;XP_013376077;XP_013376078 MODEL 10371138 ncrna LOC106146700 uncharacterized LOC106146700 NW_004955492 1269509 1273243 + 106146700 AGCD01060656;GBCQ01113491;XR_001231256 MODEL 8956268 protein-coding Erich6b glutamate rich 6B NW_004955518 3279721 3333159 - 102028567 AGCD01067798;AGCD01067799;GBDF01120562;XM_013506952 XP_013362406 MODEL 8912876 protein-coding LOC102015388 cytochrome b5 reductase 4 ENCODES a protein that exhibits cytochrome-b5 reductase activity, acting on NAD(P)H (ortholog); flavin adenine dinucleotide binding (ortholog); heme binding (ortholog); INVOLVED IN cell development (ortholog); glucose homeostasis (ortholog); insulin secretion (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN endoplasmic reticulum (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955411 11424923 11508193 + 102015388 AGCD01011819;AGCD01011820;AGCD01011821;AGCD01011822;GBDI01325383;XM_005377692;XM_013510896 XP_005377749;XP_013366350 MODEL 10242400 ncrna LOC106146429 uncharacterized LOC106146429 NW_004955478 4585240 4587197 + 106146429 AGCD01055853;GBDF01291761;XR_001230856 MODEL 8710272 protein-coding Ifrd2 interferon related developmental regulator 2 ENCODES a protein that exhibits ribosome binding (ortholog); translation repressor activity (ortholog); INVOLVED IN adipose tissue development (ortholog); fat cell differentiation (ortholog); negative regulation of translation (ortholog) NW_004955532 2101202 2106779 - 102028796 AGCD01070216;AGCD01070217;GBCB01001546;XM_005410255 XP_005410312 MODEL 8832072 protein-coding Scand1 SCAN domain containing 1 INVOLVED IN positive regulation of DNA-templated transcription (ortholog); FOUND IN nucleus (ortholog) NW_004955422 25561146 25562042 + 102003149 AGCD01023253;GBDK01004111;XM_005384762;XM_005384763 XP_005384819;XP_005384820 MODEL 8744817 pseudo LOC102010056 protein FAM136A-like NW_004955416 11217210 11218822 - 102010056 AGCD01017181 MODEL 9062973 ncrna LOC102012008 uncharacterized LOC102012008 NW_004955506 888972 890923 + 102012008 AGCD01065239;GBDF01266491;XR_264312 MODEL 9015050 ncrna LOC102004514 uncharacterized LOC102004514 NW_004955527 2177694 2179801 + 102004514 AGCD01069423;GBBH01097112;XR_264674 MODEL 8838746 protein-coding Bivm basic, immunoglobulin-like variable motif containing FOUND IN nucleoplasm (ortholog) NW_004955404 8327295 8358453 - 102028925 AGCD01003350;AGCD01003351;GBDI01324218;XM_005374026;XM_005374027;XM_013515915 XP_005374083;XP_005374084;XP_013371369 MODEL 8942823 protein-coding LOC102030082 allergen Fel d 4-like NW_004955419 14482159 14486662 - 102030082 AGCD01020022;GBDJ01116580;XM_005382699 XP_005382756 MODEL 8778525 protein-coding LOC102018455 actin-related protein T1-like NW_004955670 38169 39593 - 102018455 AGCD01077935;GBDF01251846;XM_005415068 XP_005415125 MODEL 10149343 ncrna LOC106146556 uncharacterized LOC106146556 NW_004955484 9254469 9256300 + 106146556 AGCD01058413;XR_001231045 MODEL 8865511 pseudo LOC102003469 integrator complex subunit 10-like NW_004955426 26056064 26062306 + 102003469 AGCD01026736;AGCD01026737 MODEL 8850397 protein-coding LOC102026994 alcohol dehydrogenase 1-like NW_004955496 8178732 8194853 + 102026994 AGCD01062392;GBDI01262001;XM_005406279 XP_005406336 MODEL 8902409 protein-coding Pim1 Pim-1 proto-oncogene, serine/threonine kinase ENCODES a protein that exhibits ATP binding (ortholog); manganese ion binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN cellular response to type II interferon (ortholog); negative regulation of innate immune response (ortholog); positive regulation of brown fat cell differentiation (ortholog); PARTICIPATES IN granulocyte-macrophage colony-stimulating factor signaling pathway; interleukin-3 signaling pathway; interleukin-5 signaling pathway; ASSOCIATED WITH allergic contact dermatitis (ortholog); Animal Disease Models (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955437 5940825 5945367 - 102015767 AGCD01034406;GBCB01094638;GBDJ01275927;XM_013517117 XP_013372571 MODEL 8828715 ncrna LOC102005921 uncharacterized LOC102005921 NW_004955468 5830269 5849954 + 102005921 AGCD01051978;GBDF01113513;XR_263392 MODEL 626189128 snorna SNORD2 small nucleolar RNA, C/D box 2 8852025 pseudo LOC102020616 thiamin pyrophosphokinase 1 pseudogene NW_004955555 1798411 1805160 - 102020616 AGCD01073102;AGCD01073103 MODEL 9036899 protein-coding Pacrg parkin coregulated ENCODES a protein that exhibits actin binding (ortholog); alpha-tubulin binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN flagellated sperm motility (ortholog); intracellular protein localization (ortholog); spermatid development (ortholog); FOUND IN axonemal B tubule inner sheath (ortholog); axonemal microtubule (ortholog); cell body (ortholog) NW_004955439 18152719 18664026 - 102009221 AGCD01036049;AGCD01036050;AGCD01036051;AGCD01036052;AGCD01036053;AGCD01036054;AGCD01036055;AGCD01036056;AGCD01036057;AGCD01036058;AGCD01036059;AGCD01036060;AGCD01036061;AGCD01036062;GBDI01262328;XM_005390691;XM_005390692;XM_005390693 XP_005390748;XP_005390749;XP_005390750 MODEL 8875015 ncrna LOC102021415 uncharacterized LOC102021415 NW_004955405 29322874 29335910 + 102021415 AGCD01005251;GBDF01017084;XR_259408 MODEL 10155966 protein-coding LOC106146303 uncharacterized LOC106146303 NW_004955464 8028048 8029355 - 106146303 AGCD01050078;GBDJ01128528;XM_013521758 XP_013377212 MODEL 9010088 pseudo LOC102027653 probable ATP-dependent RNA helicase DDX41 pseudogene NW_004955422 48669 50653 - 102027653 AGCD01022389;AGCD01022390;XM_005384924 MODEL 8835349 protein-coding Lats1 large tumor suppressor kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); nuclear estrogen receptor binding (ortholog); INVOLVED IN G2/M transition of mitotic cell cycle (ortholog); hippo signaling (ortholog); hormone-mediated signaling pathway (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Ependymomas (ortholog); Glandular and Epithelial Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); microtubule organizing center (ortholog) NW_004955439 11559655 11611287 + 102009881 AGCD01035913;AGCD01035914;AGCD01035915;AGCD01035916;GBDF01220461;XM_005390598;XM_005390599 XP_005390655;XP_005390656 MODEL 8870238 protein-coding Src SRC proto-oncogene, non-receptor tyrosine kinase ENCODES a protein that exhibits BMP receptor binding (ortholog); cell adhesion molecule binding (ortholog); connexin binding (ortholog); INVOLVED IN positive regulation of outer hair cell apoptotic process; adherens junction organization (ortholog); angiotensin-activated signaling pathway (ortholog); PARTICIPATES IN altered Reelin signaling pathway; dopamine signaling pathway; E-cadherin signaling pathway; ASSOCIATED WITH Hearing Loss, Noise-Induced; sensorineural hearing loss; autosomal recessive polycystic kidney disease (ortholog); FOUND IN actin filament (ortholog); anchoring junction (ortholog); axon (ortholog) NW_004955445 19213210 19227670 - 102006840 AGCD01039914;GBCB01079160;GBCE01077842;XM_013518348 XP_013373802 MODEL 8743323 protein-coding Ndufa2 NADH:ubiquinone oxidoreductase subunit A2 INVOLVED IN blastocyst hatching (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Disease Progression (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955418 52952 55060 + 102028415 AGCD01018665;GBDF01051335;XM_005382014 XP_005382071 MODEL 10125734 ncrna LOC106149269 uncharacterized LOC106149269 NW_004955441 13988780 13990058 + 106149269 AGCD01037168;GBDJ01153481;XR_001235326 MODEL 8711734 pseudo LOC102025231 60S ribosomal protein L36 pseudogene NW_004955469 290871 292912 + 102025231 AGCD01052216 MODEL 9053481 ncrna LOC102012424 uncharacterized LOC102012424 NW_004955415 32886303 32889353 - 102012424 AGCD01016738;GBDI01281650;XR_260333 MODEL 8775748 protein-coding Poglut3 protein O-glucosyltransferase 3 ENCODES a protein that exhibits EGF-domain serine glucosyltransferase activity (ortholog); EGF-domain serine xylosyltransferase activity (ortholog); UDP-glucosyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation via glucose (ortholog) NW_004955412 10582169 10598153 - 102014338 AGCD01012771;GBCE01045208;GBCE01045210;XM_013511000 XP_013366454 MODEL 9049610 ncrna LOC102009262 uncharacterized LOC102009262 NW_004955411 32414637 32423545 - 102009262 AGCD01012315;AGCD01012316;AGCD01012317;GBCQ01032791;XR_001232824;XR_259951 MODEL 8908472 protein-coding Spata4 spermatogenesis associated 4 FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955403 31548696 31558177 + 102018550 AGCD01002421;GBDF01010895;XM_005373523;XM_013513215 XP_005373580;XP_013368669 MODEL 8913161 pseudo LOC102030083 bromodomain-containing protein 7 pseudogene NW_004955419 15490591 15492561 + 102030083 AGCD01020080 MODEL 8999662 ncrna LOC102018084 uncharacterized LOC102018084 NW_004955414 33063328 33066744 - 102018084 AGCD01015795;GBCB01039007;XR_001233137 MODEL 9022939 ncrna LOC102018460 uncharacterized LOC102018460 NW_004955452 939105 985800 - 102018460 AGCD01043828;GBDI01241145;XR_262631 MODEL 9056274 pseudo LOC102007368 proline-rich nuclear receptor coactivator 1 pseudogene NW_004955437 795083 811162 - 102007368 AGCD01034163;AGCD01034164;AGCD01034165;AGCD01034166 MODEL 10118242 ncrna LOC106148076 uncharacterized LOC106148076 NW_004955415 11723409 11724787 - 106148076 AGCD01016171;GBDI01028809;XR_001233203 MODEL 8763512 protein-coding Trpc6 transient receptor potential cation channel subfamily C member 6 ENCODES a protein that exhibits actin binding (ortholog); actinin binding (ortholog); ATPase binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); cellular response to hypoxia (ortholog); negative regulation of dendrite morphogenesis (ortholog); PARTICIPATES IN endothelin signaling pathway; erythropoietin signaling pathway; ASSOCIATED WITH Albuminuria (ortholog); atypical hemolytic-uremic syndrome (ortholog); Brain Hypoxia-Ischemia (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); plasma membrane (ortholog) NW_004955412 4905039 5019678 - 102008513 AGCD01012608;AGCD01012609;AGCD01012610;AGCD01012611;AGCD01012612;GBCE01034660;GBDK01169350;XM_013511254 XP_013366708 MODEL 8925291 protein-coding Tmtc2 transmembrane O-mannosyltransferase targeting cadherins 2 ENCODES a protein that exhibits dolichyl-phosphate-mannose-protein mannosyltransferase activity (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); protein O-linked glycosylation via mannose (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Deafness (ortholog); Nonsyndromic Sensorineural Hearing Loss (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955405 20969836 21357939 + 102030493 AGCD01005065;AGCD01005066;AGCD01005067;GBDJ01031233;XM_005374399 XP_005374456 MODEL 39132694 snorna SNORD20 small nucleolar RNA, C/D box 20 8904424 protein-coding Erlec1 endoplasmic reticulum lectin 1 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN ERAD pathway (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog); endoplasmic reticulum quality control compartment (ortholog); Hrd1p ubiquitin ligase complex (ortholog) NW_004955441 19535425 19557960 + 102003697 AGCD01037349;AGCD01037350;AGCD01037351;AGCD01037352;GBBH01065712;GBDJ01003705;XM_013517526 XP_013372980 MODEL 8990784 pseudo LOC102008909 lupus La protein homolog pseudogene NW_004955402 62999061 63000015 - 102008909 AGCD01001651 MODEL 8766112 pseudo LOC102003158 zinc transporter ZIP6 pseudogene NW_004955426 25050512 25052806 + 102003158 AGCD01026701 MODEL 8950980 pseudo LOC102021423 acid sphingomyelinase-like phosphodiesterase 3a pseudogene NW_004955408 15529175 15530254 - 102021423 AGCD01008420 MODEL 8904038 protein-coding Tex101 testis expressed 101 INVOLVED IN basophil activation (ortholog); binding of sperm to zona pellucida (ortholog); fertilization (ortholog); FOUND IN acrosomal membrane (ortholog); acrosomal vesicle (ortholog); cell surface (ortholog) NW_004955555 1136499 1140802 + 102014398 AGCD01073058;GBDF01052755;XM_005412435;XM_013508734 XP_005412492;XP_013364188 MODEL 8740709 pseudo LOC102024147 laccase domain-containing protein 1-like NW_004955509 6401840 6403071 + 102024147 AGCD01066121 MODEL 8836659 protein-coding LOC102012009 ferritin-1 heavy chain-like NW_004955427 216126 219395 - 102012009 AGCD01026814;XM_005386602 XP_005386659 MODEL 9018375 protein-coding LOC102026625 olfactory receptor 6Y1 NW_004955468 10402615 10403592 - 102026625 AGCD01052084;XM_005400153 XP_005400210 MODEL 8863517 pseudo LOC102023840 syntaxin-12 pseudogene NW_004955524 561800 563436 - 102023840 AGCD01068683;AGCD01068684 MODEL 8756050 ncrna LOC102004516 uncharacterized LOC102004516 NW_004955436 16301782 16314045 + 102004516 AGCD01033912;GBDF01159287;XR_261792 MODEL 8896336 pseudo LOC102006265 serine/arginine-rich splicing factor 12 pseudogene NW_004955430 10505467 10561459 + 102006265 AGCD01029436;AGCD01029437;AGCD01029438 MODEL 8903459 protein-coding Lats2 large tumor suppressor kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN G1/S transition of mitotic cell cycle (ortholog); hippo signaling (ortholog); hormone-mediated signaling pathway (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); malignant astrocytoma (ortholog); peritoneal mesothelioma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955497 1711882 1768177 - 102010282 AGCD01062469;AGCD01062470;AGCD01062471;AGCD01062472;GBCE01135541;GBCE01135542;XM_013505466 XP_013360920 MODEL 8826377 protein-coding Pgpep1l pyroglutamyl-peptidase I like NW_004955416 26069466 26094419 + 102029621 AGCD01017594;GBCE01023023;XM_005381617;XM_013512514 XP_005381674;XP_013367968 MODEL 9049495 protein-coding LOC102028311 cytochrome b-c1 complex subunit 10 ASSOCIATED WITH pre-malignant neoplasm (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex III (ortholog) NW_004955495 6368827 6372938 + 102028311 AGCD01062074;AGCD01062075;GBCQ01004625;XM_005405957 XP_005406014 MODEL 10124850 protein-coding LOC106146982 keratin-associated protein 20-2-like NW_004955407 30243312 30243461 - 106146982 AGCD01007629;XM_013506333 XP_013361787 MODEL 8837689 protein-coding Xpa XPA, DNA damage recognition and repair factor ENCODES a protein that exhibits damaged DNA binding (ortholog); protein domain specific binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN DNA repair (ortholog); intrinsic apoptotic signaling pathway in response to DNA damage (ortholog); multicellular organism growth (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH basal cell carcinoma (ortholog); Cockayne syndrome (ortholog); genetic disease (ortholog); FOUND IN DNA replication factor A complex (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955419 27751042 27774917 + 102023038 AGCD01020448;GBDJ01229564;XM_005382841;XR_260670 XP_005382898 MODEL 8861544 protein-coding Shoc2 SHOC2 leucine rich repeat scaffold protein ENCODES a protein that exhibits protein phosphatase 1 binding (ortholog); protein phosphatase binding (ortholog); INVOLVED IN cellular response to growth hormone stimulus (ortholog); negative regulation of keratinocyte differentiation (ortholog); negative regulation of neural precursor cell proliferation (ortholog); ASSOCIATED WITH atopic dermatitis (ortholog); familial hypertrophic cardiomyopathy (ortholog); Funnel Chest (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955485 430493 517767 - 102012201 AGCD01058447;AGCD01058448;AGCD01058449;AGCD01058450;AGCD01058451;GBDJ01177936;XM_005403740;XM_005403743;XM_005403744;XM_013504084;XM_013504085 XP_005403797;XP_005403800;XP_005403801;XP_013359538;XP_013359539 MODEL 8804326 protein-coding Kmt2e lysine methyltransferase 2E (inactive) ENCODES a protein that exhibits enzyme binding (ortholog); histone H3 methyltransferase activity (ortholog); histone H3K4me3 reader activity (ortholog); INVOLVED IN epigenetic regulation of gene expression (ortholog); erythrocyte differentiation (ortholog); neutrophil activation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955410 9714587 9808021 + 102016792 AGCD01010773;AGCD01010774;AGCD01010775;AGCD01010776;GBBH01001089;XM_005377563 XP_005377620 MODEL 8822290 protein-coding Pim2 Pim-2 proto-oncogene, serine/threonine kinase ENCODES a protein that exhibits protein kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN apoptotic mitochondrial changes (ortholog); G1/S transition of mitotic cell cycle (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog) NW_004955543 444314 449201 - 102028018 AGCD01071585;GBDJ01088625;XM_005411290;XM_005411291 XP_005411347;XP_005411348 MODEL 8929822 pseudo LOC102030086 probable ribosome biogenesis protein RLP24 pseudogene NW_004955421 8361117 8363445 - 102030086 AGCD01021809 MODEL 9064245 protein-coding Slc2a4rg SLC2A4 regulator ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); INVOLVED IN regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog); prostate cancer (ortholog) NW_004955528 485653 488923 - 102004849 AGCD01069535;GBDJ01087928;GBDJ01087930;XM_005409944 XP_005410001 MODEL 8752686 pseudo LOC102025570 40S ribosomal protein S8 pseudogene NW_004955473 4777409 4777977 - 102025570 AGCD01053960 MODEL 9051481 protein-coding LOC102020618 sialic acid-binding Ig-like lectin 14 NW_004955558 1317453 1350888 - 102020618 AGCD01073434;AGCD01073435;AGCD01073436;AGCD01073437;AGCD01073438;GBBH01198034;GBBH01198038;XM_013508897;XM_013508898;XM_013508899 XP_013364351;XP_013364352;XP_013364353 MODEL 8729342 protein-coding Pacrgl parkin coregulated like NW_004955480 3911746 3925095 - 102029860 AGCD01056631;GBCQ01129150;XM_005402474;XM_013503328;XM_013503329 XP_005402531;XP_013358782;XP_013358783 MODEL 10068077 ncrna LOC106146304 uncharacterized LOC106146304 NW_004955414 27572888 27576813 - 106146304 AGCD01015663;GBDI01037345;XR_001233115 MODEL 9037534 protein-coding LOC102010058 galectin-5-like NW_004955481 5603002 5609837 - 102010058 AGCD01056998;GBDI01345788;XM_005402926 XP_005402983 MODEL 8799146 protein-coding Ift122 intraflagellar transport 122 ENCODES a protein that exhibits protein carrier activity (ortholog); INVOLVED IN camera-type eye morphogenesis (ortholog); cilium assembly (ortholog); dorsal/ventral pattern formation (ortholog); ASSOCIATED WITH Cardiac Edema (ortholog); Ciliary Motility Disorders (ortholog); cone-rod dystrophy (ortholog); FOUND IN ciliary basal body (ortholog); ciliary base (ortholog); ciliary transition zone (ortholog) NW_004955429 17795757 17858609 - 102013526 AGCD01028867;AGCD01028868;GBDF01044513;XM_005387088;XM_005387089;XM_005387090 XP_005387145;XP_005387146;XP_005387147 MODEL 9065802 protein-coding LOC102029382 cytochrome b5 domain-containing protein 1 NW_004955467 9077537 9081759 - 102029382 AGCD01051483;GBCE01064821;XM_005399450 XP_005399507 MODEL 9044954 protein-coding Scap SREBF chaperone ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN cholesterol metabolic process (ortholog); immune response (ortholog); lipid metabolic process (ortholog); PARTICIPATES IN sterol regulatory element-binding protein signaling pathway; ASSOCIATED WITH end stage renal disease (ortholog); Experimental Diabetes Mellitus (ortholog); hepatocellular carcinoma (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog); protein-containing complex (ortholog) NW_004955420 24813683 24869602 + 102005603 AGCD01021335;AGCD01021336;AGCD01021337;GBDF01090236;XM_013513390 XP_013368844 MODEL 9024430 protein-coding Bkgd beta-keto-L-gulonate decarboxylase ENCODES a protein that exhibits hydrolase activity, acting on ester bonds (ortholog); zinc ion binding (ortholog); INVOLVED IN DNA damage response (ortholog); regulation of DNA repair (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955414 780009 809016 - 102023894 AGCD01014746;AGCD01014747;AGCD01014748;AGCD01014749;GBCQ01000810;XM_005379702;XM_005379703;XM_005379704;XM_013511833 XP_005379759;XP_005379760;XP_005379761;XP_013367287 MODEL 8714405 pseudo LOC102025233 olfactory receptor 52B2-like NW_004955414 20838501 20839444 - 102025233 AGCD01015390 MODEL 39133510 snrna U4 U4 spliceosomal RNA 8775706 ncrna LOC102012010 uncharacterized LOC102012010 NW_004955506 6455233 6469865 - 102012010 AGCD01065423;AGCD01065424;AGCD01065425;AGCD01065426;GBDF01119360;XR_264363 MODEL 10183550 ncrna LOC106150092 uncharacterized LOC106150092 NW_004955464 1059233 1061237 - 106150092 AGCD01049944;GBDF01137944;XR_001236698 MODEL 10259542 ncrna LOC106146430 uncharacterized LOC106146430 NW_004955478 5758432 5763738 + 106146430 AGCD01055884;GBDF01243589;XR_001230858 MODEL 8708668 pseudo LOC102019617 serine-rich coiled-coil domain-containing protein 2 pseudogene NW_004955424 3832086 3840893 + 102019617 AGCD01024331 MODEL 39131484 protein-coding PGPEP1L pyroglutamyl-peptidase I like 8863415 protein-coding LOC102018085 protein FAM205A-like NW_004955472 1304677 1310702 + 102018085 AGCD01053385;GBDF01086556;XM_005401038;XM_005401039;XM_005401040 XP_005401095;XP_005401096;XP_005401097 MODEL 8784937 pseudo LOC102003470 L-lactate dehydrogenase A chain pseudogene NW_004955505 1011597 1012538 + 102003470 AGCD01064964 MODEL 39131555 protein-coding PIM3 Pim-3 proto-onco, serine/threonine kinase 10230194 ncrna LOC106149270 uncharacterized LOC106149270 NW_004955441 1909184 1920741 + 106149270 AGCD01036762;GBDF01263696;XR_001235330 MODEL 8706043 protein-coding Ndufa3 NADH:ubiquinone oxidoreductase subunit A3 FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955604 139844 141578 - 102015682 AGCD01076865;GBCE01007106;XM_005414866 XP_005414923 MODEL 8857547 pseudo LOC102008915 R-spondin-3 pseudogene NW_004955406 6122483 6124674 - 102008915 AGCD01005744 MODEL 9010583 ncrna LOC102021425 uncharacterized LOC102021425 NW_004955409 23740604 23772120 - 102021425 AGCD01010072;AGCD01010073;GBDK01264000;XR_259789 MODEL 9056957 protein-coding LOC102005923 apolipoprotein L3-like NW_004955413 22422434 22450771 - 102005923 AGCD01014300;AGCD01014301;AGCD01014302;GBBH01182541;XM_005379647 XP_005379704 MODEL 9012218 pseudo LOC102026630 poly(A) polymerase alpha pseudogene NW_004955471 9866163 9866926 - 102026630 AGCD01053222 MODEL 9052836 protein-coding LOC102012426 BBSome-interacting protein 1-like NW_004955478 7258776 7259420 - 102012426 AGCD01055956;XM_005402160 XP_005402217 MODEL 8810544 pseudo LOC102015390 40S ribosomal protein S4-like NW_004955465 13917721 13921061 - 102015390 AGCD01050636 MODEL 8999679 protein-coding Spata45 spermatogenesis associated 45 NW_004955406 4702976 4731424 + 102018798 AGCD01005701;AGCD01005702;GBDF01182659;XM_005374735 XP_005374792 MODEL 8847004 protein-coding LOC102004517 trace amine-associated receptor 7a-like NW_004955436 13040357 13041557 - 102004517 AGCD01033852;XM_013516593 XP_013372047 MODEL 9028743 ncrna LOC102007371 uncharacterized LOC102007371 NW_004955546 1333455 1336205 - 102007371 AGCD01072048;GBBH01028831;XR_264889 MODEL 9015323 protein-coding LOC102018462 sperm-tail PG-rich repeat-containing protein 2 NW_004955405 7862288 8221282 - 102018462 AGCD01004722;AGCD01004723;AGCD01004724;AGCD01004725;AGCD01004726;AGCD01004727;AGCD01004728;AGCD01004729;AGCD01004730;AGCD01004731;AGCD01004732;AGCD01004733;AGCD01004734;AGCD01004735;GBDF01276672;XM_013517444 XP_013372898 MODEL 9029715 protein-coding LOC102028312 olfactory receptor 10H1 NW_004955495 7371814 7372761 + 102028312 AGCD01062132;XM_005406053 XP_005406110 MODEL 8796034 protein-coding Shox SHOX homeobox ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); connective tissue disease (ortholog); Dwarfism (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955499 716476 725455 + 102005614 AGCD01063271;GBCB01029721;XM_005406505 XP_005406562 MODEL 10131098 ncrna LOC106146557 uncharacterized LOC106146557 NW_004955402 11392983 11415120 - 106146557 AGCD01000299;GBBH01017430;XR_001231052;XR_001231054 MODEL 8992702 protein-coding Erlin1 ER lipid raft associated 1 ENCODES a protein that exhibits cholesterol binding (ortholog); INVOLVED IN ERAD pathway (ortholog); negative regulation of cholesterol biosynthetic process (ortholog); negative regulation of fatty acid biosynthetic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hereditary spastic paraplegia (ortholog); hereditary spastic paraplegia 62 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); protein-containing complex (ortholog) NW_004955507 6029247 6062946 - 102020593 AGCD01065695;GBDF01082079;XM_005407685;XM_005407686 XP_005407742;XP_005407743 MODEL 10106009 ncrna LOC106146701 uncharacterized LOC106146701 NW_004955492 5422828 5428596 + 106146701 AGCD01060745;GBBH01048861;XR_001231257 MODEL 8902059 pseudo LOC102026995 protein GVQW1-like NW_004955499 7602987 7604961 + 102026995 AGCD01063594 MODEL 8966240 pseudo LOC102020620 E3 ubiquitin-protein ligase RNF13 pseudogene NW_004955444 13402641 13403733 - 102020620 AGCD01039100 MODEL 9036498 pseudo LOC102029387 stromal membrane-associated protein 1 pseudogene NW_004955414 9707038 9709595 + 102029387 AGCD01015032;XR_260165 MODEL 8810184 protein-coding LOC102025575 uncharacterized LOC102025575 NW_004955478 4082704 4099377 + 102025575 AGCD01055841;GBDF01055196;XM_013503131 XP_013358585 MODEL 8944278 protein-coding Tex11 testis expressed 11 INVOLVED IN chiasma assembly (ortholog); fertilization (ortholog); male gonad development (ortholog); ASSOCIATED WITH genetic disease (ortholog); male infertility (ortholog); spermatogenic failure 3 (ortholog); FOUND IN central element (ortholog); chromosome (ortholog); condensed nuclear chromosome (ortholog) NW_004955475 10057708 10432087 - 102027742 AGCD01055082;AGCD01055083;AGCD01055084;AGCD01055085;AGCD01055086;AGCD01055087;AGCD01055088;AGCD01055089;AGCD01055090;AGCD01055091;AGCD01055092;AGCD01055093;AGCD01055094;AGCD01055095;XM_005401706 XP_005401763 MODEL 9059247 pseudo LOC102009264 mitochondrial import inner membrane translocase subunit Tim9 pseudogene NW_004955412 19546401 19547571 - 102009264 AGCD01012960 MODEL 8772282 protein-coding Pim3 Pim-3 proto-oncogene, serine/threonine kinase ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to forskolin (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); FOUND IN cytosol (ortholog) NW_004955413 33068033 33071344 + 102014345 AGCD01014655;AGCD01014656;GBCB01038423;GBCE01052937;XM_013511307 XP_013366761 MODEL 8930363 pseudo LOC102025235 DNA-(apurinic or apyrimidinic site) lyase-like NW_004955472 7626486 7627408 - 102025235 AGCD01053624 MODEL 8916280 protein-coding Blcap BLCAP apoptosis inducing factor INVOLVED IN apoptotic nuclear changes (ortholog) NW_004955445 19116945 19127469 + 102018038 AGCD01039911;GBDF01089233;XM_005392557;XR_001235621 XP_005392614 MODEL 10327786 ncrna LOC106148077 uncharacterized LOC106148077 NW_004955415 15989264 15992129 - 106148077 AGCD01016365;XR_001233205 MODEL 8935443 protein-coding Xpc XPC complex subunit, DNA damage recognition and repair factor ENCODES a protein that exhibits damaged DNA binding (ortholog); DNA damage sensor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair (ortholog); mitotic intra-S DNA damage checkpoint signaling (ortholog); PARTICIPATES IN altered nucleotide excision repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH allergic rhinitis (ortholog); amino acid metabolic disorder (ortholog); autistic disorder (ortholog); FOUND IN chromosome (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955429 16935901 16968285 - 102023284 AGCD01028842;AGCD01028843;GBBH01000085;GBCQ01035510;XM_005387261 XP_005387318 MODEL 9026531 pseudo LOC102015393 olfactory receptor 1468-like NW_004955467 13352514 13353443 - 102015393 AGCD01051671 MODEL 8790980 protein-coding LOC102030087 proline-rich protein 33-like NW_004955422 13693667 13702004 - 102030087 AGCD01022838;GBBH01001810;XM_005384184;XM_005384185;XM_013514165;XM_013514166 XP_005384241;XP_005384242;XP_013369619;XP_013369620 MODEL 8712441 protein-coding Kmt5a lysine methyltransferase 5A ENCODES a protein that exhibits histone H4K20 methyltransferase activity (ortholog); histone H4K20 monomethyltransferase activity (ortholog); histone methyltransferase activity (ortholog); INVOLVED IN gene expression (ortholog); negative regulation of DNA-templated transcription (ortholog); negative regulation of double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN histone modification pathway; methionine cycle/metabolic pathway; p53 signaling pathway; ASSOCIATED WITH prostate cancer (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); nucleoplasm (ortholog) NW_004955482 5488151 5500764 - 102027186 AGCD01057337;AGCD01057338;AGCD01057339;GBCQ01093635;GBDI01180644;XM_013503555 XP_013359009 MODEL 8955615 pseudo LOC102003162 cyclin-dependent kinase 11B pseudogene NW_004955428 12919987 12929693 + 102003162 AGCD01027939;XM_005386732 MODEL 8875817 pseudo LOC102019621 BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 pseudogene NW_004955504 420550 422042 - 102019621 AGCD01064819 MODEL 10179757 pseudo LOC106146305 leukocyte immunoglobulin-like receptor subfamily A member 6 NW_004955567 1623257 1630169 + 106146305 AGCD01074485 MODEL 8917569 protein-coding Pacs1 phosphofurin acidic cluster sorting protein 1 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN lymphocyte homeostasis (ortholog); positive regulation of protein binding (ortholog); protein localization to Golgi apparatus (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); Developmental Disabilities (ortholog); genetic disease (ortholog); FOUND IN COPI-coated vesicle (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955422 19070369 19240424 - 102018194 AGCD01022974;AGCD01022975;AGCD01022976;AGCD01022977;AGCD01022978;AGCD01022979;AGCD01022980;AGCD01022981;AGCD01022982;AGCD01022983;AGCD01022984;AGCD01022985;AGCD01022986;AGCD01022987;AGCD01022988;GBBH01092799;GBDI01083534;XM_005384427 XP_005384484 MODEL 8929995 protein-coding LOC102010059 olfactory receptor 2M5-like NW_004955418 30041497 30084803 - 102010059 AGCD01019499;AGCD01019500;AGCD01019501;AGCD01019502;AGCD01019503;XM_013512879 XP_013368333 MODEL 8797824 pseudo LOC102018086 glyceraldehyde-3-phosphate dehydrogenase pseudogene NW_004955472 5347652 5348320 - 102018086 AGCD01053576 MODEL 8723676 protein-coding Slc2a5 solute carrier family 2 member 5 ENCODES a protein that exhibits fructose binding (ortholog); fructose transmembrane transporter activity (ortholog); INVOLVED IN cellular response to fructose stimulus (ortholog); D-glucose transmembrane transport (ortholog); fructose import across plasma membrane (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); long QT syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog); sarcolemma (ortholog) NW_004955486 4194568 4208568 + 102024804 AGCD01059057;GBDF01002394;XM_005404044;XM_013504322 XP_005404101;XP_013359776 MODEL 8901068 pseudo LOC102023841 ubiquitin-like modifier-activating enzyme 1 pseudogene NW_004955435 8791945 8792821 - 102023841 AGCD01033015 MODEL 8847908 ncrna LOC102006268 uncharacterized LOC102006268 NW_004955432 9553990 9572917 + 102006268 AGCD01030908;AGCD01030909;GBDF01017350;XR_261521 MODEL 8882175 protein-coding Pogz pogo transposable element derived with ZNF domain INVOLVED IN double-strand break repair via homologous recombination (ortholog); kinetochore assembly (ortholog); mitotic sister chromatid cohesion (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); Developmental Disabilities (ortholog); Dwarfism (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955589 920729 975242 + 102020969 AGCD01076184;AGCD01076185;GBCE01188432;XM_005414572;XM_005414573;XM_013509945;XM_013509946;XM_013509947;XM_013509948 XP_005414629;XP_005414630;XP_013365399;XP_013365400;XP_013365401;XP_013365402 MODEL 8751177 protein-coding Scaper S-phase cyclin A associated protein in the ER INVOLVED IN antral ovarian follicle growth (ortholog); ovarian follicle development (ortholog); retina development in camera-type eye (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome 1 (ortholog); cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955450 1479983 1821681 - 102017934 AGCD01042364;AGCD01042365;AGCD01042366;AGCD01042367;AGCD01042368;AGCD01042369;AGCD01042370;AGCD01042371;GBDK01433909;XM_005393474;XM_005393475;XM_005393476;XM_013519009 XP_005393531;XP_005393532;XP_005393533;XP_013374463 MODEL 8931181 protein-coding Lax1 lymphocyte transmembrane adaptor 1 ENCODES a protein that exhibits protein kinase binding (ortholog); SH2 domain binding (ortholog); INVOLVED IN antigen receptor-mediated signaling pathway (ortholog); B cell activation (ortholog); immune response (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); membrane (ortholog) NW_004955406 39656549 39667448 + 102013795 AGCD01006632;GBDI01290363;XM_005375271;XM_005375272;XM_005375273;XM_005375274;XM_005375275;XM_013522643 XP_005375328;XP_005375329;XP_005375330;XP_005375331;XP_005375332;XP_013378097 MODEL 10390353 ncrna LOC106146983 uncharacterized LOC106146983 NW_004955511 3791775 3796969 + 106146983 AGCD01066476;GBDI01281827;XR_001231672 MODEL 39133511 snrna U4 U4 spliceosomal RNA 8891047 pseudo LOC102026996 BTB/POZ domain-containing protein 10 pseudogene NW_004955425 23418331 23421778 - 102026996 AGCD01025845 MODEL 8882055 protein-coding Ndufa5 NADH:ubiquinone oxidoreductase subunit A5 INVOLVED IN respiratory electron transport chain (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Facial Nerve Injuries (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); protein-containing complex (ortholog) NW_004955479 5065948 5080215 - 102013081 AGCD01056340;GBCB01006579;XM_005402326;XM_013503295 XP_005402383;XP_013358749 MODEL 8860731 protein-coding LOC102008917 keratin-associated protein 20-2-like NW_004955407 30198704 30198859 + 102008917 AGCD01007628;XM_005375646 XP_005375703 MODEL 8805462 protein-coding LOC102026631 mas-related G-protein coupled receptor member X2-like NW_004955414 33760355 33761319 + 102026631 AGCD01015825;XM_013511748 XP_013367202 MODEL 8822029 protein-coding Trpc7 transient receptor potential cation channel subfamily C member 7 ENCODES a protein that exhibits calcium channel activity (ortholog); INVOLVED IN calcium ion transport (ortholog); manganese ion transport (ortholog); ASSOCIATED WITH lung cancer (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog) NW_004955408 31260767 31408852 - 102015178 AGCD01008824;GBDF01075659;XM_013507541 XP_013362995 MODEL 10138059 ncrna LOC106150093 uncharacterized LOC106150093 NW_004955464 7696776 7698418 + 106150093 AGCD01050067;GBDF01090347;XR_001236699 MODEL 9036277 pseudo LOC102018464 40S ribosomal protein S10 pseudogene NW_004955406 4674448 4678458 - 102018464 AGCD01005699 MODEL 8905112 protein-coding Spata46 spermatogenesis associated 46 INVOLVED IN fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); spermatogenesis (ortholog); FOUND IN nuclear membrane (ortholog) NW_004955462 13950726 13953765 + 102013912 AGCD01049435;GBCE01083721;XM_005398276;XM_005398277 XP_005398333;XP_005398334 MODEL 10125680 ncrna LOC106146431 uncharacterized LOC106146431 NW_004955478 7452619 7464519 - 106146431 AGCD01055964;AGCD01055965;AGCD01055966;AGCD01055967;XR_001230859 MODEL 8836055 protein-coding Pgr progesterone receptor ENCODES a protein that exhibits ATPase binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to estrogen stimulus (ortholog); cellular response to follicle-stimulating hormone stimulus (ortholog); cellular response to gonadotropin stimulus (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); Brain Injuries (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); chromatin (ortholog) NW_004955412 4643839 4693478 - 102007639 AGCD01012599;AGCD01012600;AGCD01012601;GBCE01175276;GBDJ01419714;XM_005377963 XP_005378020 MODEL 8858927 protein-coding LOC102024148 olfactory receptor 1020 NW_004955511 1745965 1747014 - 102024148 AGCD01066378;XM_005408241 XP_005408298 MODEL 8874336 ncrna LOC102003471 uncharacterized LOC102003471 NW_004955428 13113557 13178517 - 102003471 AGCD01027942;AGCD01027943;AGCD01027944;GBDI01311971;XR_001234449;XR_001234450;XR_261299 MODEL 8910885 protein-coding Shox2 SHOX homeobox 2 ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); INVOLVED IN cardiac atrium morphogenesis (ortholog); cardiac pacemaker cell differentiation (ortholog); cardiac right atrium morphogenesis (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); cleft palate (ortholog); Leri-Weill dyschondrosteosis (ortholog) NW_004955448 8937656 8947890 - 102024863 AGCD01041456;GBBH01225102;XM_005393094;XM_005393095 XP_005393151;XP_005393152 MODEL 9010153 protein-coding LOC102029388 interferon-induced very large GTPase 1-like NW_004955414 22409925 22417214 - 102029388 AGCD01015455;XM_005380171 XP_005380228 MODEL 8772939 pseudo LOC102027660 zinc finger CCCH domain-containing protein 14-like NW_004955425 25156218 25158423 - 102027660 AGCD01025910 MODEL 9030472 protein-coding Erlin2 ER lipid raft associated 2 ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN ERAD pathway (ortholog); negative regulation of cholesterol biosynthetic process (ortholog); negative regulation of fatty acid biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia (ortholog); hereditary spastic paraplegia 10 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); membrane raft (ortholog) NW_004955463 13445468 13460370 + 102011633 AGCD01049867;GBBH01031754;XM_005398411;XM_013521497;XM_013521498 XP_005398468;XP_013376951;XP_013376952 MODEL 39132915 snorna SNORD21 Small nucleolar RNA SNORD21 9066958 protein-coding Tmtc3 transmembrane O-mannosyltransferase targeting cadherins 3 ENCODES a protein that exhibits dolichyl-phosphate-mannose-protein mannosyltransferase activity (ortholog); INVOLVED IN bud outgrowth involved in lung branching (ortholog); cell differentiation (ortholog); lung alveolus development (ortholog); ASSOCIATED WITH genetic disease (ortholog); lissencephaly (ortholog); lissencephaly 8 (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955405 25607134 25646050 + 102011621 AGCD01005177;GBCE01127255;XM_005374428;XM_013518135;XM_013518136 XP_005374485;XP_013373589;XP_013373590 MODEL 8807614 protein-coding Srcap Snf2 related CREBBP activator protein ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent chromatin remodeler activity (ortholog); transcription coactivator activity (ortholog); INVOLVED IN cAMP/PKA signal transduction (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); adenoid cystic carcinoma (ortholog); autism spectrum disorder (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955493 7554724 7602560 + 102019075 AGCD01061202;AGCD01061203;AGCD01061204;AGCD01061205;GBDI01117388;XM_005405271;XM_005405272 XP_005405328;XP_005405329 MODEL 8947979 protein-coding Pimreg PICALM interacting mitotic regulator FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955467 11967986 11972049 + 102006114 AGCD01051621;GBDF01160170;XM_013522225 XP_013377679 MODEL 8952084 pseudo LOC102007372 60S ribosomal protein L26-like NW_004955441 13050841 13051739 - 102007372 AGCD01037141 MODEL 8718317 pseudo LOC102004518 microfibrillar-associated protein 1 pseudogene NW_004955437 7042525 7045014 + 102004518 AGCD01034448 MODEL 8754508 protein-coding LOC102025236 olfactory receptor 11L1-like NW_004955473 3784391 3785317 - 102025236 AGCD01053938;XM_005401295 XP_005401352 MODEL 8761762 protein-coding Pola1 DNA polymerase alpha 1, catalytic subunit ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA polymerase activity (ortholog); INVOLVED IN DNA biosynthetic process (ortholog); DNA repair (ortholog); DNA replication (ortholog); ASSOCIATED WITH aplastic anemia (ortholog); genetic disease (ortholog); Van Esch-O'Driscoll syndrome (ortholog); FOUND IN alpha DNA polymerase:primase complex (ortholog); chromatin (ortholog); cytosol (ortholog) NW_004955509 5007385 5319683 + 102020470 AGCD01066094;AGCD01066095;AGCD01066096;AGCD01066097;AGCD01066098;AGCD01066099;AGCD01066100;GBBH01097790;XM_005407854;XM_013506296 XP_005407911;XP_013361750 MODEL 8953426 protein-coding Ift140 intraflagellar transport 140 ENCODES a protein that exhibits protein carrier activity (ortholog); INVOLVED IN cilium assembly (ortholog); determination of left/right symmetry (ortholog); embryonic brain development (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); autosomal dominant polycystic kidney disease (ortholog); FOUND IN axoneme (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955442 15625429 15719006 + 102004648 AGCD01037877;AGCD01037878;GBDJ01108332;XM_005391568;XM_013517666;XM_013517667;XM_013517668 XP_005391625;XP_013373120;XP_013373121;XP_013373122 MODEL 10066962 ncrna LOC106146558 uncharacterized LOC106146558 NW_004955484 7366409 7367780 - 106146558 AGCD01058329;GBBH01170071;XR_001231047 MODEL 10197285 ncrna LOC106146702 uncharacterized LOC106146702 NW_004955492 6863111 6903889 + 106146702 AGCD01060774;AGCD01060775;XR_001231258 MODEL 8825360 protein-coding Kmt5b lysine methyltransferase 5B ENCODES a protein that exhibits chromatin binding (ortholog); histone H4K20 methyltransferase activity (ortholog); histone H4K20 monomethyltransferase activity (ortholog); INVOLVED IN DNA repair (ortholog); positive regulation of double-strand break repair via nonhomologous end joining (ortholog); positive regulation of isotype switching (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant intellectual developmental disorder 51 (ortholog); Developmental Disabilities (ortholog); FOUND IN condensed chromosome, centromeric region (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955422 17626606 17684890 + 102005719 AGCD01022929;AGCD01022930;AGCD01022931;AGCD01022932;GBBH01076410;GBDI01216944;XM_013514163;XM_013514164 XP_013369617;XP_013369618 MODEL 8724932 pseudo LOC102021426 E3 ubiquitin-protein ligase RING2 pseudogene NW_004955409 37557200 37558907 - 102021426 AGCD01010529 MODEL 10301181 protein-coding LOC106146306 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1-like NW_004955405 518712 534297 - 106146306 AGCD01004567;AGCD01004568;AGCD01004569;AGCD01004570;GBBH01035628;XM_013517296 XP_013372750 MODEL 8713710 ncrna LOC102025579 uncharacterized LOC102025579 NW_004955418 20819141 20822115 + 102025579 AGCD01019242;GBCQ01000651;XR_260576 MODEL 8794080 ncrna LOC102012013 uncharacterized LOC102012013 NW_004955431 310644 317292 - 102012013 AGCD01029865;GBDK01414667;XR_261437 MODEL 8823190 protein-coding LOC102005927 olfactory receptor 52A5-like NW_004955414 21125400 21126350 - 102005927 AGCD01015407;XM_005380494 XP_005380551 MODEL 9052965 protein-coding Slc2a6 solute carrier family 2 member 6 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); regulation of glycolytic process (ortholog); FOUND IN lysosomal membrane (ortholog) NW_004955513 2796086 2802051 - 102017903 AGCD01066890;GBBH01198307;XM_005408447;XM_005408448 XP_005408504;XP_005408505 MODEL 10309685 ncrna LOC106146703 uncharacterized LOC106146703 NW_004955493 5373242 5375563 + 106146703 AGCD01061066;GBDF01210012;XR_001231261;XR_001231262 MODEL 8731963 protein-coding LOC102028315 U1 small nuclear ribonucleoprotein C-like NW_004955425 25803742 25813817 - 102028315 AGCD01025937;GBDF01145893;XM_005386057 XP_005386114 MODEL 8854438 protein-coding Scara3 scavenger receptor class A member 3 FOUND IN endoplasmic reticulum (ortholog) NW_004955403 50185857 50223340 + 102007616 AGCD01002960;GBDF01127369;XM_013514256;XM_013514262;XM_013514272;XM_013514277 XP_013369710;XP_013369716;XP_013369726;XP_013369731 MODEL 8781105 protein-coding Blk BLK proto-oncogene, Src family tyrosine kinase ENCODES a protein that exhibits non-membrane spanning protein tyrosine kinase activity (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); peptidyl-tyrosine phosphorylation (ortholog); positive regulation of insulin secretion (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; glypican signaling pathway; ASSOCIATED WITH diabetes mellitus (ortholog); Kawasaki disease (ortholog); maturity-onset diabetes of the young (ortholog) NW_004955403 52825397 52874007 + 102028368 AGCD01003019;AGCD01003020;GBBH01183458;XM_005373820;XM_005373821;XM_005373822;XM_005373823;XM_013514535 XP_005373877;XP_005373878;XP_005373879;XP_005373880;XP_013369989 MODEL 8852292 ncrna LOC102003164 uncharacterized LOC102003164 NW_004955428 25464176 25472249 + 102003164 AGCD01028284;GBDF01123213;XR_261308 MODEL 8799199 protein-coding LOC102015403 olfactory receptor 226-like NW_004955477 11120415 11121371 - 102015403 AGCD01055716;XM_005402086 XP_005402143 MODEL 9043291 protein-coding Xpnpep1 X-prolyl aminopeptidase 1 ENCODES a protein that exhibits aminopeptidase activity (ortholog); manganese ion binding (ortholog); metalloaminopeptidase activity (ortholog); INVOLVED IN bradykinin catabolic process (ortholog); negative regulation of programmed cell death (ortholog); proteolysis (ortholog); PARTICIPATES IN kallikrein-kinin cascade pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955485 1436834 1501408 + 102019066 AGCD01058479;AGCD01058480;AGCD01058481;AGCD01058482;GBDI01236003;XM_005403764;XM_005403767;XM_005403768;XM_013504117;XM_013504118;XM_013504119;XM_013504120 XP_005403821;XP_005403824;XP_005403825;XP_013359571;XP_013359572;XP_013359573;XP_013359574 MODEL 10293833 ncrna LOC106146432 uncharacterized LOC106146432 NW_004955478 2745319 2759248 + 106146432 AGCD01055802;AGCD01055803;GBCQ01141143;XR_001230867;XR_001230868 MODEL 9007013 pseudo LOC102010065 plasminogen activator inhibitor 1 RNA-binding protein pseudogene NW_004955424 3444768 3446184 - 102010065 AGCD01024310;XR_261038 MODEL 8845134 protein-coding LOC102019623 olfactory receptor 8K5-like NW_004955511 1421949 1422887 + 102019623 AGCD01066366;XM_013506424 XP_013361878 MODEL 10388066 protein-coding LOC106149271 uncharacterized LOC106149271 NW_004955441 17030908 17055135 + 106149271 AGCD01037281;GBDF01128113;XM_013517624;XR_001235331;XR_001235332;XR_001235333;XR_001235334;XR_001235335;XR_001235336;XR_001235337;XR_001235338 XP_013373078 MODEL 8991062 pseudo LOC102018089 methyltransferase-like protein 17, mitochondrial NW_004955416 190699 192939 + 102018089 AGCD01016780 MODEL 8807199 protein-coding Spata6 spermatogenesis associated 6 ENCODES a protein that exhibits myosin light chain binding (ortholog); INVOLVED IN motile cilium assembly (ortholog); spermatogenesis (ortholog); FOUND IN sperm head-tail coupling apparatus (ortholog) NW_004955464 10225661 10340528 + 102004580 AGCD01050120;AGCD01050121;AGCD01050122;AGCD01050123;AGCD01050124;GBDF01002413;XM_005398629;XM_005398630 XP_005398686;XP_005398687 MODEL 8701428 protein-coding Tex12 testis expressed 12 INVOLVED IN meiotic DNA repair synthesis (ortholog); synaptonemal complex assembly (ortholog); FOUND IN central element (ortholog); centrosome (ortholog); chromosome (ortholog) NW_004955412 13829637 13834481 + 102028391 AGCD01012846;GBCQ01024502;XM_005378113;XM_005378115;XM_005378116;XM_005378117;XM_013511042;XM_013511044 XP_005378170;XP_005378172;XP_005378173;XP_005378174;XP_013366496;XP_013366498 MODEL 8704128 protein-coding LOC102023842 zinc finger protein OZF-like NW_004955532 259427 307861 - 102023842 AGCD01070111;AGCD01070112;AGCD01070113;GBDF01011091;XM_005410144;XM_005410145;XM_013507658;XM_013507659;XM_013507660 XP_005410201;XP_005410202;XP_013363112;XP_013363113;XP_013363114 MODEL 8710547 ncrna LOC102012427 uncharacterized LOC102012427 NW_004955479 4854411 4862694 - 102012427 AGCD01056335;AGCD01056336;GBDF01305284;XR_001230876 MODEL 8756103 pseudo LOC102006269 cytochrome b-c1 complex subunit Rieske, mitochondrial-like NW_004955432 23785334 23799271 + 102006269 AGCD01031294;AGCD01031295 MODEL 10362875 ncrna LOC106148078 uncharacterized LOC106148078 NW_004955415 28077451 28080112 + 106148078 AGCD01016636;GBCB01080354;XR_001233206 MODEL 39133512 snrna U4 U4 spliceosomal RNA 9016933 pseudo LOC102027000 ubiquitin carboxyl-terminal hydrolase isozyme L3 pseudogene NW_004955512 2236757 2237465 + 102027000 AGCD01066670;XR_264442 MODEL 8886494 protein-coding Layn layilin ENCODES a protein that exhibits hyaluronic acid binding (ortholog) NW_004955412 13282871 13298214 + 102015617 AGCD01012831;GBCE01024195;XM_013511017 XP_013366471 MODEL 10188282 ncrna LOC106146984 uncharacterized LOC106146984 NW_004955511 4865427 4869377 - 106146984 AGCD01066538;GBBH01078098;XR_001231677 MODEL 8779020 protein-coding Ndufa6 NADH:ubiquinone oxidoreductase subunit A6 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); genetic disease (ortholog); mitochondrial metabolism disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955413 27485678 27491757 - 102004371 AGCD01014509;GBCQ01011147;XM_005379396 XP_005379453 MODEL 9012939 ncrna LOC102025582 uncharacterized LOC102025582 NW_004955419 7261765 7281635 - 102025582 AGCD01019875;AGCD01019876;AGCD01019877;GBDF01000070;XR_260615 MODEL 10241662 protein-coding LOC106150094 basic salivary proline-rich protein 1-like NW_004955464 6285341 6285841 - 106150094 AGCD01050023;GBCQ01044540;XM_013521721 XP_013377175 MODEL 8878159 ncrna LOC102018470 uncharacterized LOC102018470 NW_004955456 7484949 7492235 + 102018470 AGCD01046416;AGCD01046417;GBDF01004071;XR_262887 MODEL 8772940 protein-coding LOC102030088 RNA-binding protein 4B NW_004955422 18705028 18717410 + 102030088 AGCD01022959;GBDF01008696;XM_005384371;XM_005384372;XM_005384373;XR_260895 XP_005384428;XP_005384429;XP_005384430 MODEL 8733791 protein-coding Trpm1 transient receptor potential cation channel subfamily M member 1 ENCODES a protein that exhibits calcium channel activity (ortholog); monoatomic cation channel activity (ortholog); monoatomic cation transmembrane transporter activity (ortholog); INVOLVED IN calcium ion import across plasma membrane (ortholog); cellular response to light stimulus (ortholog); G protein-coupled glutamate receptor signaling pathway (ortholog); ASSOCIATED WITH congenital stationary night blindness (ortholog); congenital stationary night blindness 1C (ortholog); Ependymomas (ortholog); FOUND IN cell tip (ortholog); dendrite (ortholog); endoplasmic reticulum (ortholog) NW_004955416 29846374 29880922 - 102017234 AGCD01017668;XM_013512689 XP_013368143 MODEL 8939787 pseudo LOC102025240 ATP-binding cassette sub-family A member 8-B-like NW_004955478 3891326 3947184 + 102025240 AGCD01055834;AGCD01055835;AGCD01055836;XM_005402290 MODEL 8880492 protein-coding Pacs2 phosphofurin acidic cluster sorting protein 2 INVOLVED IN autophagosome assembly (ortholog); endoplasmic reticulum calcium ion homeostasis (ortholog); mitochondrion-endoplasmic reticulum membrane tethering (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 1 (ortholog); developmental and epileptic encephalopathy 66 (ortholog); epilepsy (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955538 3559738 3616862 + 102006820 AGCD01071172;GBBH01140227;GBCQ01092841;XM_005410865;XM_013507854;XM_013507855;XM_013507856;XM_013507858;XM_013507859;XM_013507860;XM_013507861 XP_005410922;XP_013363308;XP_013363309;XP_013363310;XP_013363312;XP_013363313;XP_013363314;XP_013363315 MODEL 8797188 ncrna LOC102024149 uncharacterized LOC102024149 NW_004955431 15828867 15848471 - 102024149 AGCD01030364;GBDF01014760;XR_001234583;XR_261480 MODEL 8823441 protein-coding Srcin1 SRC kinase signaling inhibitor 1 ENCODES a protein that exhibits protein domain specific binding (ortholog); protein kinase binding (ortholog); INVOLVED IN behavioral response to cocaine (ortholog); conditioned place preference (ortholog); negative regulation of cell adhesion (ortholog); ASSOCIATED WITH cocaine dependence (ortholog); Cocaine-Related Disorders (ortholog); FOUND IN actin cytoskeleton (ortholog); axon (ortholog); cytoplasm (ortholog) NW_004955451 13673613 13734639 - 102018149 AGCD01043497;AGCD01043498;AGCD01043499;AGCD01043500;GBBH01186980;GBDK01061796;XM_013519340;XM_013519341;XM_013519342;XM_013519343;XM_013519344;XM_013519345;XM_013519346;XM_013519347;XM_013519348;XM_013519349;XM_013519350;XM_013519351;XM_013519352;XM_013519353;XM_013519354;XM_013519355;XR_001235979 XP_013374794;XP_013374795;XP_013374796;XP_013374797;XP_013374798;XP_013374799;XP_013374800;XP_013374801;XP_013374802;XP_013374803;XP_013374804;XP_013374805;XP_013374806;XP_013374807;XP_013374808;XP_013374809 MODEL 9026497 protein-coding Pgrmc1 progesterone receptor membrane component 1 ENCODES a protein that exhibits heme binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN associative learning (ortholog); axon guidance (ortholog); heme biosynthetic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); cataract (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cell body (ortholog); extracellular region (ortholog); mitochondrial outer membrane (ortholog) NW_004955534 698895 706586 - 102013446 AGCD01070467;GBBH01003936;XM_005410449 XP_005410506 MODEL 9046681 ncrna LOC102009265 uncharacterized LOC102009265 NW_004955412 20503994 20512991 + 102009265 AGCD01013010;GBDF01155155;XR_260005 MODEL 8989693 pseudo LOC102025241 U6 snRNA-associated Sm-like protein LSm3 pseudogene NW_004955480 8692235 8697603 - 102025241 AGCD01056730 MODEL 39132909 snorna SNORD21 Small nucleolar RNA SNORD21 8709960 protein-coding Erln endoregulin INVOLVED IN negative regulation of ATPase-coupled calcium transmembrane transporter activity (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955506 6590028 6592474 - 102014927 AGCD01065432;GBDF01040884;XM_005407489 XP_005407546 MODEL 8993001 protein-coding LOC102029389 olfactory receptor 52A1-like NW_004955414 20831751 20832701 + 102029389 AGCD01015390;XM_005380482 XP_005380539 MODEL 8966236 ncrna LOC102019625 uncharacterized LOC102019625 NW_004955431 15052267 15054709 + 102019625 AGCD01030345;GBDF01291829;XR_001234581;XR_261475 MODEL 8774436 pseudo LOC102005928 60S ribosomal protein L30-like NW_004955475 4519787 4520219 + 102005928 AGCD01054881;XR_263612 MODEL 8721119 ncrna LOC102012428 uncharacterized LOC102012428 NW_004955417 7483800 7490830 + 102012428 AGCD01018005;AGCD01018006;GBDF01137161;XR_260463 MODEL 8847120 ncrna LOC102008918 uncharacterized LOC102008918 NW_004955408 4765453 4769584 - 102008918 AGCD01008118;GBDF01188494;XR_259660 MODEL 8766207 ncrna LOC102007380 uncharacterized LOC102007380 NW_004955445 17614758 17619898 - 102007380 AGCD01039895;GBDF01145045;XR_262349 MODEL 8709291 protein-coding Pola2 DNA polymerase alpha 2, accessory subunit ENCODES a protein that exhibits DNA-directed DNA polymerase activity (ortholog); INVOLVED IN DNA replication (ortholog); DNA replication initiation (ortholog); DNA replication, synthesis of primer (ortholog); ASSOCIATED WITH telomere biology disorder (ortholog); FOUND IN alpha DNA polymerase:primase complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955422 19939971 19963753 - 102012445 AGCD01023049;AGCD01023050;GBDF01279643;XM_005384504;XM_005384505;XM_005384506 XP_005384561;XP_005384562;XP_005384563 MODEL 8801082 protein-coding LOC102003167 olfactory receptor 5D13-like NW_004955511 533129 545086 + 102003167 AGCD01066333;XM_005408198 XP_005408255 MODEL 8820864 protein-coding LOC102003475 olfactory receptor 5D18-like NW_004955511 551616 552566 - 102003475 AGCD01066333;XM_005408199 XP_005408256 MODEL 8933373 protein-coding LOC102021429 putative olfactory receptor 10D4 NW_004955412 24688405 24689343 - 102021429 AGCD01013121;XM_013510940 XP_013366394 MODEL 9024557 pseudo LOC102027661 homeodomain-interacting protein kinase 3-like NW_004955427 20503771 20507557 + 102027661 AGCD01027403 MODEL 8754321 protein-coding Shpk sedoheptulokinase ENCODES a protein that exhibits sedoheptulokinase activity (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); cellular response to interleukin-13 (ortholog); cellular response to interleukin-4 (ortholog); ASSOCIATED WITH SEDOHEPTULOKINASE DEFICIENCY (ortholog); FOUND IN cytoplasm (ortholog) NW_004955467 13169072 13209585 + 102020549 AGCD01051667;AGCD01051668;GBCQ01123966;XM_005399716;XM_005399717 XP_005399773;XP_005399774 MODEL 10291934 ncrna LOC106149272 uncharacterized LOC106149272 NW_004955441 7415580 7418445 + 106149272 AGCD01036963;GBBH01054658;XR_001235341 MODEL 8723404 protein-coding Xpnpep2 X-prolyl aminopeptidase 2 ENCODES a protein that exhibits aminopeptidase activity (ortholog); PARTICIPATES IN kallikrein-kinin cascade pathway; ASSOCIATED WITH acquired angioedema (ortholog); angioedema (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN extracellular exosome (ortholog) NW_004955473 5248065 5274469 - 102013166 AGCD01053973;GBCQ01010121;XM_005401259 XP_005401316 MODEL 8760164 protein-coding Kmt5c lysine methyltransferase 5C ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); histone H4K20 methyltransferase activity (ortholog); INVOLVED IN DNA repair (ortholog); positive regulation of double-strand break repair via nonhomologous end joining (ortholog); positive regulation of isotype switching (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); liver benign neoplasm (ortholog); FOUND IN condensed chromosome, centromeric region (ortholog); heterochromatin (ortholog); nucleoplasm (ortholog) NW_004955567 895334 901240 - 102025055 AGCD01074445;AGCD01074446;GBDF01050988;XM_005413333;XM_013509262;XM_013509263;XM_013509264;XM_013509265;XM_013509266;XM_013509267 XP_005413390;XP_013364716;XP_013364717;XP_013364718;XP_013364719;XP_013364720;XP_013364721 MODEL 9035034 pseudo LOC102026637 methylmalonic aciduria and homocystinuria type D homolog, mitochondrial pseudogene NW_004955416 10427102 10427969 + 102026637 AGCD01017138 MODEL 8863071 protein-coding Tex13a testis expressed 13A NW_004955548 2078523 2080119 - 102005305 AGCD01072386;GBDK01049334;XM_005412010 XP_005412067 MODEL 8826901 protein-coding Spata6l spermatogenesis associated 6 like NW_004955434 8893132 8956994 - 102024946 AGCD01032278;AGCD01032279;AGCD01032280;AGCD01032281;GBBH01089885;XM_005388637;XM_005388638;XM_005388639;XM_005388640 XP_005388694;XP_005388695;XP_005388696;XP_005388697 MODEL 8729783 protein-coding LOC102020625 conserved oligomeric Golgi complex subunit 1-like NW_004956455 1203 4140 - 102020625 AGCD01079623;AGCD01079624;GBBH01032449;GBBH01032450;XM_005415200 XP_005415257 MODEL 8928427 protein-coding LOC102004531 uncharacterized LOC102004531 NW_004955447 9636461 9712154 + 102004531 AGCD01040865;AGCD01040866;XM_005392954 XP_005393011 MODEL 9019704 pseudo LOC102029392 receptor-binding cancer antigen expressed on SiSo cells pseudogene NW_004955475 11188434 11189824 + 102029392 AGCD01055144 MODEL 8828688 protein-coding Slc2a8 solute carrier family 2 member 8 ENCODES a protein that exhibits D-glucose binding (ortholog); D-glucose transmembrane transporter activity (ortholog); dehydroascorbic acid transmembrane transporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); dehydroascorbic acid transport (ortholog); fructose transmembrane transport (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); plasma membrane (ortholog); synaptic vesicle (ortholog) NW_004955419 1177752 1187157 - 102003967 AGCD01019644;GBDI01010591;XM_005382427;XM_005382428;XM_005382429 XP_005382484;XP_005382485;XP_005382486 MODEL 8964918 protein-coding LOC102012015 carboxylesterase 1D-like NW_004955433 13630963 13654307 - 102012015 AGCD01031696;GBDF01156979;XM_013516095;XM_013516096 XP_013371549;XP_013371550 MODEL 10385975 ncrna LOC106146985 uncharacterized LOC106146985 NW_004955407 31569920 31581489 + 106146985 AGCD01007654;XR_001231678;XR_001231679 MODEL 8705077 protein-coding Scara5 scavenger receptor class A member 5 ENCODES a protein that exhibits ferritin receptor activity (ortholog); INVOLVED IN cellular response to heat (ortholog); endocytosis (ortholog); intracellular iron ion homeostasis (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955403 50386212 50486335 - 102009566 AGCD01002966;GBDJ01137248;XM_005373759 XP_005373816 MODEL 10229525 ncrna LOC106146559 uncharacterized LOC106146559 NW_004955407 25536283 25548598 - 106146559 AGCD01007511;XR_001231050 MODEL 9029470 pseudo LOC102012430 39S ribosomal protein L21, mitochondrial pseudogene NW_004955417 9985249 9986014 + 102012430 AGCD01018063 MODEL 8725555 pseudo LOC102015407 uncharacterized protein C12orf45 homolog pseudogene NW_004955419 3283262 3285627 + 102015407 AGCD01019716 MODEL 9044566 protein-coding Blm BLM RecQ like helicase ENCODES a protein that exhibits 3'-5' DNA helicase activity (ortholog); 8-hydroxy-2'-deoxyguanosine DNA binding (ortholog); ATP binding (ortholog); INVOLVED IN alpha-beta T cell differentiation (ortholog); cellular response to camptothecin (ortholog); cellular response to hydroxyurea (ortholog); PARTICIPATES IN DNA replication pathway; homologous recombination pathway of double-strand break repair; ASSOCIATED WITH Bloom syndrome (ortholog); Breast Cancer, Familial (ortholog); colorectal cancer (ortholog); FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); lateral element (ortholog) NW_004955416 14814753 14899865 + 102015513 AGCD01017283;AGCD01017284;AGCD01017285;AGCD01017286;GBDF01222241;XM_005381505;XM_005381506;XM_013512656;XM_013512657 XP_005381562;XP_005381563;XP_013368110;XP_013368111 MODEL 8882311 protein-coding LOC102025583 protein FAM170A-like NW_004955420 1596769 1639016 - 102025583 AGCD01020574;AGCD01020575;AGCD01020576;GBDF01120709;XM_005382997;XM_013513627 XP_005383054;XP_013369081 MODEL 10235042 ncrna LOC106146433 uncharacterized LOC106146433 NW_004955478 7877353 7879997 - 106146433 AGCD01055998;GBBH01028371;XR_001230869 MODEL 10339078 protein-coding LOC106146307 arylacetamide deacetylase-like 4 NW_004955486 753884 774266 - 106146307 AGCD01058882;AGCD01058883;AGCD01058884;AGCD01058885;AGCD01058886;XM_013504139 XP_013359593 MODEL 8847491 ncrna LOC102018090 uncharacterized LOC102018090 NW_004955416 20999242 21004789 + 102018090 AGCD01017482;GBDI01164565;XR_260400 MODEL 8873342 protein-coding Trpm2 transient receptor potential cation channel subfamily M member 2 ENCODES a protein that exhibits ADP-ribose diphosphatase activity (ortholog); calcium ion binding (ortholog); hydrolase activity (ortholog); INVOLVED IN calcium ion import across plasma membrane (ortholog); calcium ion transmembrane import into cytosol (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); Brain Injuries (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytoplasmic vesicle membrane (ortholog); lysosomal membrane (ortholog) NW_004955407 41062217 41110500 - 102025656 AGCD01007854;AGCD01007855;GBBH01060494;GBBH01060499;XM_005375860;XM_005375861;XM_013505319;XM_013505324;XM_013505330;XM_013505335 XP_005375917;XP_005375918;XP_013360773;XP_013360778;XP_013360784;XP_013360789 MODEL 8955098 protein-coding Tmtc4 transmembrane O-mannosyltransferase targeting cadherins 4 ENCODES a protein that exhibits ATPase binding (ortholog); dolichyl-phosphate-mannose-protein mannosyltransferase activity (ortholog); INVOLVED IN endoplasmic reticulum unfolded protein response (ortholog); outer hair cell apoptotic process (ortholog); positive regulation of endoplasmic reticulum calcium ion concentration (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 122 (ortholog); Worster-Drought Syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955404 10213186 10266581 + 102006200 AGCD01003377;GBCE01041273;GBDF01110575;XM_013515999 XP_013371453 MODEL 10152487 protein-coding LOC106146704 testis-expressed sequence 9 protein-like NW_004955493 2779774 2794639 - 106146704 AGCD01060966;AGCD01060967;XM_013504740 XP_013360194 MODEL 8821644 ncrna LOC102025248 uncharacterized LOC102025248 NW_004955485 8508562 8510362 - 102025248 AGCD01058717;GBDF01051854;XR_263929 MODEL 39133513 snrna U4 U4 spliceosomal RNA 8832879 protein-coding LOC102006272 zinc finger protein 474-like NW_004955521 253407 305771 + 102006272 AGCD01068134;GBDJ01215638;XM_005409288;XM_013507095;XM_013507096 XP_005409345;XP_013362549;XP_013362550 MODEL 8893967 pseudo LOC102019626 vesicle transport through interaction with t-SNAREs homolog 1B pseudogene NW_004955513 712796 713445 - 102019626 AGCD01066830 MODEL 8767245 protein-coding Lbh LBH regulator of WNT signaling pathway INVOLVED IN mammary gland development (ortholog); mammary gland epithelial cell differentiation (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955469 12054727 12078796 + 102020650 AGCD01052576;GBDI01078372;XM_005400551 XP_005400608 MODEL 8913957 pseudo LOC102005933 LYR motif-containing protein 2 pseudogene NW_004955418 22822234 22822422 + 102005933 AGCD01019292 MODEL 8903735 protein-coding LOC102030089 vomeromodulin-like NW_004955422 27911763 27927470 - 102030089 AGCD01023340;GBBH01026740;XM_013514322 XP_013369776 MODEL 8962133 pseudo LOC102018472 olfactory receptor 9-like NW_004955458 3279883 3281726 + 102018472 AGCD01047291 MODEL 9059103 protein-coding Ift172 intraflagellar transport 172 ENCODES a protein that exhibits transcription factor binding (ortholog); INVOLVED IN bone development (ortholog); brain development (ortholog); cilium assembly (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); atrioventricular septal defect (ortholog); FOUND IN cilium (ortholog); intraciliary transport particle A (ortholog); intraciliary transport particle B (ortholog) NW_004955469 9418599 9455026 - 102004921 AGCD01052503;GBDJ01229225;XM_005400503;XM_013522663 XP_005400560;XP_013378117 MODEL 8751959 protein-coding LOC102024151 odorant-binding protein 2b NW_004955513 2677180 2678707 - 102024151 AGCD01066885;GBBH01002292;GBCE01008927;XM_005408643 XP_005408700 MODEL 8815909 protein-coding Pacsin1 protein kinase C and casein kinase substrate in neurons 1 ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); identical protein binding (ortholog); phospholipid binding (ortholog); INVOLVED IN cytoskeleton organization (ortholog); negative regulation of endocytosis (ortholog); neuron projection morphogenesis (ortholog); FOUND IN axon terminus (ortholog); COPI-coated vesicle (ortholog); cytoplasm (ortholog) NW_004955437 2621013 2665194 + 102017500 AGCD01034282;AGCD01034283;AGCD01034284;GBBH01183696;XM_005389526;XM_013516920 XP_005389583;XP_013372374 MODEL 8734054 ncrna LOC102003168 uncharacterized LOC102003168 NW_004955513 4074732 4078682 + 102003168 AGCD01066914;GBDF01146373;XR_264473 MODEL 8908417 protein-coding Pgrmc2 progesterone receptor membrane component 2 ENCODES a protein that exhibits heme binding (ortholog); heme transmembrane transporter activity (ortholog); INVOLVED IN adipose tissue development (ortholog); heme transport (ortholog); ASSOCIATED WITH Hirschsprung's disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular region (ortholog); glutamatergic synapse (ortholog) NW_004955428 13260915 13278656 + 102015550 AGCD01027946;AGCD01027947;GBBH01118701;GBDF01122101;XM_013515321 XP_013370775 MODEL 10247324 ncrna LOC106148079 uncharacterized LOC106148079 NW_004955403 7646921 7671829 - 106148079 AGCD01001861;AGCD01001862;GBDJ01338020;XR_001233207;XR_001233208 MODEL 8859730 protein-coding LOC102023843 HLA class II histocompatibility antigen, DM alpha chain ENCODES a protein that exhibits MHC class II protein complex binding (ortholog); INVOLVED IN antigen processing and presentation (ortholog); antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); immunoglobulin mediated immune response (ortholog); ASSOCIATED WITH contact dermatitis (ortholog); Diabetic Nephropathies (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cell surface (ortholog); endosome membrane (ortholog); late endosome (ortholog) NW_004955437 1558806 1562294 - 102023843 AGCD01034217;GBCQ01154927;GBDJ01008419;XM_005389460 XP_005389517 MODEL 8787079 pseudo LOC102009267 60S ribosomal protein L7a pseudogene NW_004955467 9883721 9884522 + 102009267 AGCD01051535 MODEL 8870043 protein-coding Pin1 peptidylprolyl cis/trans isomerase, NIMA-interacting 1 ENCODES a protein that exhibits beta-catenin binding (ortholog); cis-trans isomerase activity (ortholog); cytoskeletal motor activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); microtubule polymerization (ortholog); negative regulation of amyloid-beta formation (ortholog); PARTICIPATES IN altered p53 signaling pathway; p53 signaling pathway; platelet-derived growth factor signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); asthma (ortholog); Breast Neoplasms (ortholog); FOUND IN ciliary basal body (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955495 1250557 1261617 + 102025700 AGCD01061678;GBDF01008372;XM_005405574;XM_013505361 XP_005405631;XP_013360815 MODEL 10203503 ncrna LOC106146309 uncharacterized LOC106146309 NW_004955452 1118148 1131922 - 106146309 AGCD01043831;AGCD01043832;GBDI01166542;XR_001236096 MODEL 8913162 pseudo LOC102030091 UDP-N-acetylhexosamine pyrophosphorylase pseudogene NW_004955423 17374036 17375513 - 102030091 AGCD01023852 MODEL 8715819 ncrna LOC102027001 uncharacterized LOC102027001 NW_004955432 1618245 1628231 - 102027001 AGCD01030600;AGCD01030601;GBCB01009360;XR_261501;XR_261502 MODEL 9058724 protein-coding Ermap erythroblast membrane associated protein (Scianna blood group) FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955537 2340282 2360925 + 102016848 AGCD01070925;AGCD01070926;AGCD01070927;GBBH01072402;XM_013507744;XM_013507745 XP_013363198;XP_013363199 MODEL 8911694 ncrna LOC102026647 uncharacterized LOC102026647 NW_004955421 14758538 14764675 - 102026647 AGCD01021961;GBDF01254547;XR_260793 MODEL 9026912 protein-coding Ndufa7 NADH:ubiquinone oxidoreductase subunit A7 FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955563 1074182 1080928 + 102015466 AGCD01074111;AGCD01074112;GBDK01044927;XM_005413133 XP_005413190 MODEL 10251940 ncrna LOC106150095 uncharacterized LOC106150095 NW_004955464 10693138 10729425 - 106150095 AGCD01050127;GBCE01094116;XR_001236701;XR_001236702 MODEL 8795136 ncrna LOC102025249 uncharacterized LOC102025249 NW_004955420 13631690 13636547 + 102025249 AGCD01020925;GBDF01082247;XR_260714 MODEL 9026820 protein-coding LOC102007382 cytochrome P450 3A9-like NW_004955573 1366578 1409840 + 102007382 AGCD01075045;AGCD01075046;AGCD01075047;AGCD01075048;GBDI01323456;XM_005413769;XM_005413770 XP_005413826;XP_005413827 MODEL 8949212 pseudo LOC102029393 transmembrane protein 258 pseudogene NW_004955416 7766104 7766445 + 102029393 AGCD01017012 MODEL 8752499 protein-coding Srd5a1 steroid 5 alpha-reductase 1 ENCODES a protein that exhibits 3-oxo-5-alpha-steroid 4-dehydrogenase (NADP+) activity (ortholog); 3-oxo-5-alpha-steroid 4-dehydrogenase activity (ortholog); binding (ortholog); INVOLVED IN androgen biosynthetic process (ortholog); androgen catabolic process (ortholog); androgen metabolic process (ortholog); PARTICIPATES IN testosterone biosynthetic pathway; ASSOCIATED WITH alcohol dependence (ortholog); breast carcinoma (ortholog); Cardiomegaly (ortholog); FOUND IN cell body fiber (ortholog); neuronal cell body (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955504 4360909 4388964 + 102015422 AGCD01064883;GBCB01024373;XM_005407066 XP_005407123 MODEL 8790648 ncrna LOC102015411 uncharacterized LOC102015411 NW_004955487 2724146 2728644 + 102015411 AGCD01059266;GBDF01277703;XR_263983 MODEL 9010916 protein-coding Polb DNA polymerase beta ENCODES a protein that exhibits 5'-deoxyribose-5-phosphate lyase activity (ortholog); class I DNA-(apurinic or apyrimidinic site) endonuclease activity (ortholog); damaged DNA binding (ortholog); INVOLVED IN apoptotic process (ortholog); base-excision repair (ortholog); base-excision repair, gap-filling (ortholog); ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); Colonic Neoplasms (ortholog); middle cerebral artery infarction (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); microtubule (ortholog) NW_004955536 542179 595198 - 102008456 AGCD01070729;AGCD01070730;AGCD01070731;AGCD01070732;GBDF01009059;XM_005410509 XP_005410566 MODEL 8970421 ncrna LOC102021430 uncharacterized LOC102021430 NW_004955413 23270738 23276929 + 102021430 AGCD01014329;GBDF01129567;XR_260096 MODEL 39132826 snorna SNORD21 Small nucleolar RNA SNORD21 8841866 pseudo LOC102028316 protein slowmo homolog 2 pseudogene NW_004955425 25478696 25479259 - 102028316 AGCD01025920 MODEL 10165565 ncrna LOC106146434 uncharacterized LOC106146434 NW_004955478 627890 678421 + 106146434 AGCD01055740;GBBH01061738;XR_001230870 MODEL 8814534 ncrna LOC102018091 uncharacterized LOC102018091 NW_004955416 30012956 30018288 + 102018091 AGCD01017675;GBDF01066665;XR_260438 MODEL 8708539 protein-coding Tex13b testis expressed 13B NW_004955490 7943444 7944995 + 102015732 AGCD01060269;GBDF01087099;XM_005404683 XP_005404740 MODEL 8903879 protein-coding Pgs1 phosphatidylglycerophosphate synthase 1 PARTICIPATES IN cardiolipin biosynthetic pathway; glycerophospholipid metabolic pathway; ASSOCIATED WITH High Myopia (ortholog); FOUND IN endoplasmic reticulum (ortholog); mitochondrion (ortholog) NW_004955506 4160546 4203474 - 102006798 AGCD01065326;GBDK01230748;XM_005407376;XM_013506038 XP_005407433;XP_013361492 MODEL 9049670 protein-coding Xpnpep3 X-prolyl aminopeptidase 3 ENCODES a protein that exhibits aminopeptidase activity (ortholog); manganese ion binding (ortholog); metalloaminopeptidase activity (ortholog); INVOLVED IN glomerular filtration (ortholog); protein processing (ortholog); proteolysis (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH genetic disease (ortholog); kidney disease (ortholog); nephronophthisis-like nephropathy 1 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955413 26507860 26564105 + 102012848 AGCD01014446;AGCD01014447;AGCD01014448;AGCD01014449;AGCD01014450;GBDF01158243;XM_005379329;XM_005379330;XM_005379334;XM_013511350;XM_013511351 XP_005379386;XP_005379387;XP_005379391;XP_013366804;XP_013366805 MODEL 8747882 protein-coding Trpm3 transient receptor potential cation channel subfamily M member 3 ENCODES a protein that exhibits calcium channel activity (ortholog); G-protein beta/gamma-subunit complex binding (ortholog); monoatomic cation channel activity (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); monoatomic cation transport (ortholog); protein homotetramerization (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); autosomal dominant intellectual developmental disorder (ortholog); Birk-Barel syndrome (ortholog); FOUND IN plasma membrane (ortholog) NW_004955434 2017809 2543827 + 102022219 AGCD01032082;AGCD01032083;AGCD01032084;AGCD01032085;AGCD01032086;AGCD01032087;AGCD01032088;AGCD01032089;AGCD01032090;AGCD01032091;AGCD01032092;AGCD01032093;AGCD01032094;AGCD01032095;AGCD01032096;AGCD01032097;GBDK01308805;XM_005388528;XM_005388530;XM_005388531;XM_005388535;XM_005388536;XM_005388541;XM_005388542;XM_005388548;XM_005388550;XM_005388552 XP_005388585;XP_005388587;XP_005388588;XP_005388592;XP_005388593;XP_005388598;XP_005388599;XP_005388605;XP_005388607;XP_005388609 MODEL 8767681 protein-coding LOC102010067 basic proline-rich protein-like NW_004955424 20327818 20328443 - 102010067 AGCD01024848;GBBH01018048;GBDK01212327;XM_013514645 XP_013370099 MODEL 39133515 snrna U4 U4 spliceosomal RNA 8704596 ncrna LOC102020626 uncharacterized LOC102020626 NW_004955451 15331564 15337087 + 102020626 AGCD01043605;GBDJ01052134;XR_001235959;XR_001235960 MODEL 9031882 protein-coding LOC102019628 chromosome unknown open reading frame, human C17orf58 NW_004955432 9347128 9347594 + 102019628 AGCD01030904;XM_013515911 XP_013371365 MODEL 8827232 protein-coding Pin4 peptidylprolyl cis/trans isomerase, NIMA-interacting 4 ENCODES a protein that exhibits bent DNA binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN rRNA processing (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial matrix (ortholog); nucleolus (ortholog) NW_004955475 11563379 11577133 + 102013078 AGCD01055156;AGCD01055157;AGCD01055158;GBDI01136207;XM_005401685 XP_005401742 MODEL 10262228 protein-coding LOC106146986 putative olfactory receptor 4A4 NW_004955511 33882 42456 - 106146986 AGCD01066308;AGCD01066309;AGCD01066310;AGCD01066311;XM_013506355 XP_013361809 MODEL 10100033 protein-coding LOC106146560 serine/arginine repetitive matrix protein 3-like NW_004955484 7490050 7491391 + 106146560 AGCD01058334;GBDF01016904;XM_013503935 XP_013359389 MODEL 10325958 ncrna LOC106150096 uncharacterized LOC106150096 NW_004955464 10783404 10795883 - 106150096 AGCD01050127;GBBH01095879;XR_001236705 MODEL 9061970 protein-coding Slc2a9 solute carrier family 2 member 9 ENCODES a protein that exhibits D-glucose transmembrane transporter activity (ortholog); fructose transmembrane transporter activity (ortholog); urate transmembrane transporter activity (ortholog); INVOLVED IN D-glucose transmembrane transport (ortholog); fructose transmembrane transport (ortholog); urate metabolic process (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); genetic disease (ortholog); gout (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); nuclear envelope (ortholog) NW_004955514 5479585 5625328 - 102029652 AGCD01067155;AGCD01067156;AGCD01067157;GBDI01170943;XM_005408843 XP_005408900 MODEL 8980950 ncrna LOC102012432 uncharacterized LOC102012432 NW_004955418 28369715 28371889 + 102012432 AGCD01019436;GBDF01147816;XR_260592 MODEL 8914520 ncrna LOC102003476 uncharacterized LOC102003476 NW_004955431 22858925 22862195 + 102003476 AGCD01030524;GBDJ01402645;XR_261494 MODEL 9055412 ncrna LOC102025584 uncharacterized LOC102025584 NW_004955420 28103197 28110913 - 102025584 AGCD01021470;XR_260766 MODEL 8743848 protein-coding LOC102027664 olfactory receptor 5B2-like NW_004955511 3139769 3144628 - 102027664 AGCD01066444;AGCD01066445;GBDF01152944;GBDF01152947;XM_005408027 XP_005408084 MODEL 9030889 protein-coding Shprh SNF2 histone linker PHD RING helicase ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin protein ligase binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN DNA damage response (ortholog); protein polyubiquitination (ortholog) NW_004955436 14698210 14779231 + 102028463 AGCD01033875;AGCD01033876;GBDF01251664;XM_005389229 XP_005389286 MODEL 9053511 protein-coding Pacsin2 protein kinase C and casein kinase substrate in neurons 2 ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); identical protein binding (ortholog); lipid binding (ortholog); INVOLVED IN caveola assembly (ortholog); caveolin-mediated endocytosis (ortholog); cell migration involved in sprouting angiogenesis (ortholog); ASSOCIATED WITH myoepithelioma (ortholog); systemic juvenile rheumatoid arthritis (ortholog); FOUND IN adherens junction (ortholog); caveola (ortholog); cell-cell junction (ortholog) NW_004955413 28119769 28209258 - 102014343 AGCD01014552;GBDK01079688;XM_013511482;XM_013511483 XP_013366936;XP_013366937 MODEL 9031659 protein-coding Spata7 spermatogenesis associated 7 INVOLVED IN microtubule cytoskeleton organization (ortholog); photoreceptor cell maintenance (ortholog); protein localization to photoreceptor connecting cilium (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); Leber congenital amaurosis (ortholog); FOUND IN axoneme (ortholog); ciliary basal body (ortholog); ciliary transition zone (ortholog) NW_004955438 11033089 11069178 + 102005509 AGCD01035223;AGCD01035224;GBDF01008623;XM_005390253;XM_005390254;XM_005390255 XP_005390310;XP_005390311;XP_005390312 MODEL 39133417 snorna SNORD22 Small nucleolar RNA SNORD22 10303081 ncrna LOC106148080 uncharacterized LOC106148080 NW_004955403 7756220 7762200 + 106148080 AGCD01001863;GBDJ01294444;XR_001233210 MODEL 8715958 protein-coding Tmub1 transmembrane and ubiquitin like domain containing 1 INVOLVED IN ERAD pathway (ortholog); postsynaptic neurotransmitter receptor internalization (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); nucleus (ortholog) NW_004955491 5518199 5520743 - 102004076 AGCD01060486;GBDJ01125606;XM_005404815;XM_005404816 XP_005404872;XP_005404873 MODEL 8900040 pseudo LOC102012019 RNA-binding motif protein, X chromosome-like NW_004955436 8932484 8933843 - 102012019 AGCD01033755;XR_261778 MODEL 8774842 protein-coding LOC102027002 lanosterol 14-alpha demethylase ENCODES a protein that exhibits heme binding (ortholog); sterol 14-demethylase activity (ortholog); INVOLVED IN cholesterol biosynthetic process via 24,25-dihydrolanosterol (ortholog); negative regulation of amyloid-beta clearance (ortholog); negative regulation of protein catabolic process (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH Antley-Bixler syndrome (ortholog); cataract (ortholog); diabetes mellitus (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955432 9092923 9112615 - 102027002 AGCD01030892;GBCQ01037189;XM_005388004 XP_005388061 MODEL 39131388 protein-coding LBHD2 LBH domain containing 2 39133420 snorna SNORD22 Small nucleolar RNA SNORD22 8865523 protein-coding LOC102005934 olfactory receptor 1L3-like NW_004955419 5269472 5270444 - 102005934 AGCD01019797;XM_013513102 XP_013368556 MODEL 8765301 protein-coding LOC102025254 olfactory receptor 2A1/2A42-like NW_004955491 466262 467182 + 102025254 AGCD01060336;XM_005404883 XP_005404940 MODEL 8925949 protein-coding Blmh bleomycin hydrolase ENCODES a protein that exhibits aminopeptidase activity (ortholog); identical protein binding (ortholog); peptidase activity (ortholog); INVOLVED IN response to toxic substance (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH Alzheimer's disease 1 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955481 3031283 3078678 + 102003869 AGCD01056891;AGCD01056892;AGCD01056893;GBDF01058051;XM_005402657;XM_005402658;XM_005402659 XP_005402714;XP_005402715;XP_005402716 MODEL 10369642 ncrna LOC106149273 uncharacterized LOC106149273 NW_004955441 14024288 14077782 - 106149273 AGCD01037169;AGCD01037170;AGCD01037171;AGCD01037172;GBCE01023126;XR_001235342;XR_001235343;XR_001235344 MODEL 8730431 ncrna LOC102024154 uncharacterized LOC102024154 NW_004955515 4883104 4889729 - 102024154 AGCD01067332;GBDF01014882;XR_264527 MODEL 8967580 protein-coding Kncn kinocilin FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); ciliary basal body (ortholog) NW_004955464 11756803 11759934 + 102018481 AGCD01050161;XM_005398673 XP_005398730 MODEL 9019224 pseudo LOC102003174 transcription factor E2F6 pseudogene NW_004955437 13053465 13055563 + 102003174 AGCD01034639 MODEL 8858507 protein-coding Ift20 intraflagellar transport 20 ENCODES a protein that exhibits opsin binding (ortholog); small GTPase binding (ortholog); INVOLVED IN cardiac muscle cell differentiation (ortholog); centrosome localization (ortholog); cilium assembly (ortholog); FOUND IN acrosomal vesicle (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955481 4799548 4807751 + 102007225 AGCD01056953;GBDF01089063;XM_005402762;XM_005402763;XM_005402764;XM_005402766;XM_005402767 XP_005402819;XP_005402820;XP_005402821;XP_005402823;XP_005402824 MODEL 9053136 pseudo LOC102021433 rRNA 2'-O-methyltransferase fibrillarin pseudogene NW_004955471 1185113 1185892 + 102021433 AGCD01052972 MODEL 8989104 ncrna LOC102008922 uncharacterized LOC102008922 NW_004955460 11145349 11152507 + 102008922 AGCD01048629;AGCD01048630;GBCQ01032294;XR_001236540 MODEL 9026073 ncrna LOC102004534 uncharacterized LOC102004534 NW_004955402 4403382 4407335 + 102004534 AGCD01000122;GBCQ01155602;XR_259024;XR_259025 MODEL 8703390 protein-coding LOC102028320 tetraspanin-11 NW_004955429 18777421 18822829 - 102028320 AGCD01028921;AGCD01028922;AGCD01028923;GBCQ01010048;GBDJ01355119;XM_005387138;XM_005387139;XM_005387140;XM_013515458;XR_001234511;XR_261360 XP_005387195;XP_005387196;XP_005387197;XP_013370912 MODEL 9037872 protein-coding LOC102023844 chromosome unknown open reading frame, human C6orf89 INVOLVED IN chromatin remodeling (ortholog); epithelial cell proliferation (ortholog); positive regulation of cell cycle (ortholog); FOUND IN cytoplasm (ortholog); Golgi membrane (ortholog); midbody (ortholog) NW_004955437 6087297 6124219 - 102023844 AGCD01034414;AGCD01034415;AGCD01034416;AGCD01034417;GBCE01052717;XM_005389633;XM_013517007;XM_013517008 XP_005389690;XP_013372461;XP_013372462 MODEL 8884037 protein-coding Ermard ER membrane associated RNA degradation ASSOCIATED WITH periventricular nodular heterotopia (ortholog); periventricular nodular heterotopia 6 (ortholog) NW_004955411 3838125 3866282 - 102018814 AGCD01011556;GBDK01058947;XM_005377629;XM_005377630;XM_005377631;XM_005377632;XM_005377633;XM_005377634;XM_013510740;XM_013510742 XP_005377686;XP_005377687;XP_005377688;XP_005377689;XP_005377690;XP_005377691;XP_013366194;XP_013366196 MODEL 8871182 protein-coding Scarb1 scavenger receptor class B member 1 ENCODES a protein that exhibits amyloid-beta binding (ortholog); apolipoprotein A-I binding (ortholog); apolipoprotein binding (ortholog); INVOLVED IN androgen biosynthetic process (ortholog); blood vessel endothelial cell migration (ortholog); cholesterol catabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; reverse cholesterol transport pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); cannabis abuse (ortholog); carcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); caveola (ortholog) NW_004955482 4813502 4836479 + 102009609 AGCD01057311;GBBH01183747;XM_005403004;XM_005403005;XM_005403006;XM_005403007;XM_013503708 XP_005403061;XP_005403062;XP_005403063;XP_005403064;XP_013359162 MODEL 8935941 pseudo LOC102018475 60S ribosomal protein L21 pseudogene NW_004955408 8362648 8363163 + 102018475 AGCD01008216 MODEL 8830058 protein-coding Srd5a2 steroid 5 alpha-reductase 2 ENCODES a protein that exhibits 3-oxo-5-alpha-steroid 4-dehydrogenase (NADP+) activity (ortholog); 3-oxo-5-alpha-steroid 4-dehydrogenase activity (ortholog); binding (ortholog); INVOLVED IN androgen biosynthetic process (ortholog); androgen metabolic process (ortholog); bone development (ortholog); PARTICIPATES IN testosterone biosynthetic pathway; ASSOCIATED WITH alopecia (ortholog); autism spectrum disorder (ortholog); breast carcinoma (ortholog); FOUND IN cell body fiber (ortholog); neuronal cell body (ortholog) NW_004955441 12149 95733 - 102020288 AGCD01036675;AGCD01036676;AGCD01036677;AGCD01036678;GBDF01286957;XM_005390834 XP_005390891 MODEL 10209725 pseudo LOC106146987 translocon-associated protein subunit gamma pseudogene NW_004955511 82585 82993 - 106146987 AGCD01066317 MODEL 10063746 ncrna LOC106146561 uncharacterized LOC106146561 NW_004955484 7401550 7466004 + 106146561 AGCD01058331;AGCD01058332;GBDF01251776;XR_001231048;XR_001231049 MODEL 8974771 pseudo LOC102012433 calcyclin-binding protein pseudogene NW_004955419 25409135 25411025 - 102012433 AGCD01020385 MODEL 10177571 protein-coding LOC106146705 proline-rich receptor-like protein kinase PERK10 NW_004955493 7512596 7513522 - 106146705 AGCD01061196;XM_013504747 XP_013360201 MODEL 8732812 protein-coding Lbr lamin B receptor ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); chromo shadow domain binding (ortholog); Delta14-sterol reductase activity (ortholog); INVOLVED IN cholesterol biosynthetic process (ortholog); cholesterol biosynthetic process via desmosterol (ortholog); neutrophil differentiation (ortholog); PARTICIPATES IN cholesterol biosynthetic pathway; histone modification pathway; ASSOCIATED WITH Anadysplasia-Like, Spontaneously Remitting Spondylometaphyseal Dysplasia (ortholog); asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955520 401733 418279 + 102006067 AGCD01068016;GBDF01125131;GBDF01125132;XM_013507049 XP_013362503 MODEL 10254355 protein-coding LOC106146310 scavenger receptor cysteine-rich domain-containing protein SCART1-like NW_004955477 11142835 11147515 + 106146310 AGCD01055716;GBDF01125390;XM_013503024 XP_013358478 MODEL 8893426 protein-coding LOC102030094 zinc finger protein 14-like NW_004955499 68764 74415 - 102030094 AGCD01063179;GBDK01132260;XM_005406499 XP_005406556 MODEL 8885525 protein-coding LOC102009273 tripartite motif-containing protein 34 NW_004955414 21592178 21600802 + 102009273 AGCD01015423;AGCD01015424;GBDI01215595;XM_005380097;XM_005380098;XM_013512000;XM_013512001 XP_005380154;XP_005380155;XP_013367454;XP_013367455 MODEL 8903338 pseudo LOC102006273 methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial pseudogene NW_004955522 3958620 3960291 + 102006273 AGCD01068410 MODEL 8924114 protein-coding LOC102018096 serine/threonine-protein phosphatase 6 regulatory subunit 1 NW_004955483 7973276 8000527 + 102018096 AGCD01057823;GBDI01008367;GBDI01008376;XM_005403389;XM_005403390;XM_013503822;XM_013503823 XP_005403446;XP_005403447;XP_013359276;XP_013359277 MODEL 8803940 protein-coding Tex13c TEX13 family member C NW_004955473 9425572 9428326 - 102028852 AGCD01054074;GBDF01079065;XM_005401296 XP_005401353 MODEL 9044402 protein-coding Ndufa8 NADH:ubiquinone oxidoreductase subunit A8 ENCODES a protein that exhibits protein-containing complex binding (ortholog); ASSOCIATED WITH Nuclear Type Mitochondrial Complex I Deficiency 37 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955419 5903392 5917045 + 102011317 AGCD01019843;GBDJ01082304;XM_005382541 XP_005382598 MODEL 10385165 ncrna LOC106148081 uncharacterized LOC106148081 NW_004955415 32697577 32698195 - 106148081 AGCD01016730;GBCE01142194;XR_001233211 MODEL 8912229 protein-coding Xpo1 exportin 1 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); nuclear export signal receptor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN cellular response to salt (ortholog); cellular response to triglyceride (ortholog); mRNA export from nucleus (ortholog); PARTICIPATES IN CRM1 export pathway; Hedgehog signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH amenorrhea (ortholog); atrial fibrillation (ortholog); colorectal cancer (ortholog); FOUND IN annulate lamellae (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955424 22370006 22420568 + 102022407 AGCD01024966;AGCD01024967;GBDF01082052;XM_005385738;XM_005385739 XP_005385795;XP_005385796 MODEL 9000197 protein-coding Spata9 spermatogenesis associated 9 NW_004955418 16862007 16892303 + 102014358 AGCD01019130;AGCD01019131;GBCB01088315;XM_005382236;XM_005382239 XP_005382293;XP_005382296 MODEL 8905759 protein-coding Tmub2 transmembrane and ubiquitin like domain containing 2 NW_004955451 17277530 17280585 + 102009906 AGCD01043735;GBCB01042231;GBDF01084095;XM_005394521 XP_005394578 MODEL 8953501 protein-coding LOC102007386 vomeronasal type-1 receptor 1-like NW_004955584 327390 329695 + 102007386 AGCD01075939;GBDK01158023;XM_005414355 XP_005414412 MODEL 8875292 pseudo LOC102029396 40S ribosomal protein S25 pseudogene NW_004955481 2732407 2732934 - 102029396 AGCD01056881 MODEL 9066622 protein-coding LOC102019632 zinc finger protein 14-like NW_004955524 494044 505928 - 102019632 AGCD01068679;AGCD01068680;GBDF01220106;XM_013507329 XP_013362783 MODEL 8947055 protein-coding Phactr1 phosphatase and actin regulator 1 ENCODES a protein that exhibits actin binding (ortholog); protein phosphatase 1 binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actomyosin structure organization (ortholog); cell motility (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); ARTERIAL DISSECTION (ortholog); atherosclerosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955465 1395418 1915820 - 102015389 AGCD01050338;AGCD01050339;AGCD01050340;AGCD01050341;AGCD01050342;AGCD01050343;AGCD01050344;AGCD01050345;AGCD01050346;GBBH01011676;XM_005398816 XP_005398873 MODEL 8725556 pseudo LOC102015413 40S ribosomal protein S24 pseudogene NW_004955423 1431836 1432412 + 102015413 AGCD01023434 MODEL 8875134 protein-coding LOC102027006 triadin-like NW_004955436 4927224 4963543 - 102027006 AGCD01033674;GBDF01153986;XM_013516583 XP_013372037 MODEL 10347570 pseudo LOC106150097 diphosphoinositol polyphosphate phosphohydrolase 2 pseudogene NW_004955464 181925 184495 + 106150097 AGCD01049928 MODEL 8811891 pseudo LOC102005936 tyrosine-protein phosphatase non-receptor type 2-like NW_004955483 1097670 1098910 - 102005936 AGCD01057640 MODEL 151707876 snorna SNORD23 small nucleolar RNA, C/D box 23 8794475 pseudo LOC102026649 ubiquitin-like modifier-activating enzyme 1 pseudogene NW_004955490 6857259 6858338 - 102026649 AGCD01060240 MODEL 9055392 protein-coding LOC102024155 zinc finger protein 709-like NW_004955432 4485530 4494277 + 102024155 AGCD01030722;AGCD01030723;GBDF01195694;XM_013515914 XP_013371368 MODEL 8774901 ncrna LOC102003180 uncharacterized LOC102003180 NW_004955547 143678 152995 + 102003180 AGCD01072134;GBBH01161629;XR_264896 MODEL 8937284 protein-coding Shq1 SHQ1, H/ACA ribonucleoprotein assembly factor INVOLVED IN positive regulation of TORC1 signaling (ortholog); protein-RNA complex assembly (ortholog); regulation of androgen receptor signaling pathway (ortholog); ASSOCIATED WITH dystonia 35, childhood-onset (ortholog); NEURODEVELOPMENTAL DISORDER WITH DYSTONIA AND SEIZURES (ortholog); FOUND IN Cajal body (ortholog); cytoplasm (ortholog); nucleolus (ortholog) NW_004955421 15358387 15455534 + 102027862 AGCD01021980;GBCE01080321;XM_005383768;XM_005383769 XP_005383825;XP_005383826 MODEL 8752519 protein-coding Blnk B cell linker ENCODES a protein that exhibits enzyme binding (ortholog); lipid binding (ortholog); molecular condensate scaffold activity (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); intracellular signal transduction (ortholog); positive regulation of gene expression (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase class I signaling pathway; ASSOCIATED WITH agammaglobulinemia (ortholog); agammaglobulinemia 4 (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955507 2398694 2466461 - 102015652 AGCD01065587;AGCD01065588;AGCD01065589;GBBH01092683;XM_005407570;XM_013506235;XM_013506236 XP_005407627;XP_013361689;XP_013361690 MODEL 8743135 protein-coding Ift22 intraflagellar transport 22 FOUND IN centrosome (ortholog); cilium (ortholog); intraciliary transport particle A (ortholog) NW_004955456 15980412 15987573 + 102020763 AGCD01046681;GBDF01088462;XM_005396853;XM_005396854;XR_262912 XP_005396910;XP_005396911 MODEL 8986678 protein-coding Pacsin3 protein kinase C and casein kinase substrate in neurons 3 ENCODES a protein that exhibits calcium channel inhibitor activity (ortholog); cytoskeletal protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of calcium ion transport (ortholog); negative regulation of endocytosis (ortholog); plasma membrane tubulation (ortholog); ASSOCIATED WITH congenital myopathy 27 (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955422 989605 995140 + 102028546 AGCD01022444;GBCE01077101;XM_005383998 XP_005384055 MODEL 10092704 protein-coding LOC106146311 vomeronasal type-2 receptor 116-like NW_004955524 421256 505840 - 106146311 AGCD01068677;AGCD01068678;AGCD01068679;AGCD01068680;GBDF01020958;XM_013507331 XP_013362785 MODEL 39133517 snrna U4 U4 spliceosomal RNA 10303346 ncrna LOC102004537 uncharacterized LOC102004537 NW_004955450 329137 331150 - 102004537 AGCD01042328;GBDF01061386;XR_001235908;XR_001235909 MODEL 8992459 ncrna LOC102012023 uncharacterized LOC102012023 NW_004955437 2178719 2183875 + 102012023 AGCD01034261;AGCD01034262;GBDF01160448;XR_001235086;XR_001235087;XR_001235088 MODEL 8727505 protein-coding Pink1 PTEN induced kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); C3HC4-type RING finger domain binding (ortholog); kinase activity (ortholog); INVOLVED IN autophagy of mitochondrion (ortholog); cellular response to hydrogen sulfide (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN altered mitochondrial autophagy pathway; mitochondria dynamics pathway; mitochondrial autophagy pathway; ASSOCIATED WITH cognitive disorder (ortholog); genetic disease (ortholog); late onset Parkinson's disease (ortholog); FOUND IN astrocyte projection (ortholog); axon (ortholog); cell body (ortholog) NW_004955452 1171115 1186338 + 102011271 AGCD01043834;AGCD01043835;GBBH01034979;GBDF01010551;XM_013519660 XP_013375114 MODEL 8776911 pseudo LOC102003478 pre-mRNA-splicing regulator WTAP-like NW_004955514 116863 117609 + 102003478 AGCD01066997 MODEL 8838993 protein-coding Scarb2 scavenger receptor class B member 2 ENCODES a protein that exhibits cargo receptor activity (ortholog); cholesterol binding (ortholog); enzyme binding (ortholog); INVOLVED IN aminophospholipid transport (ortholog); autophagy (ortholog); endosome to plasma membrane protein transport (ortholog); ASSOCIATED WITH benign epilepsy with centrotemporal spikes (ortholog); COVID-19 (ortholog); focal segmental glomerulosclerosis (ortholog); FOUND IN endocytic vesicle membrane (ortholog); lysosomal lumen (ortholog); lysosomal membrane (ortholog) NW_004955433 884740 962932 - 102013442 AGCD01031339;AGCD01031340;GBCB01002351;GBCE01029601;XM_005388182 XP_005388239 MODEL 8885737 protein-coding Slc30a1 solute carrier family 30 member 1 ENCODES a protein that exhibits calcium channel inhibitor activity (ortholog); calcium:monoatomic cation antiporter activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN cadmium ion transmembrane transport (ortholog); calcium ion import (ortholog); copper ion transport (ortholog); ASSOCIATED WITH visual epilepsy (ortholog); FOUND IN basolateral plasma membrane (ortholog); cytoplasm (ortholog); cytoplasmic vesicle membrane (ortholog) NW_004955406 5662312 5668331 + 102014742 AGCD01005735;GBDF01051945;XM_013520219 XP_013375673 MODEL 8850595 protein-coding Ndufa9 NADH:ubiquinone oxidoreductase subunit A9 ENCODES a protein that exhibits NADH dehydrogenase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN circadian rhythm (ortholog); response to glucose (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2J (ortholog); congenital myopathy 5 (ortholog); genetic disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrial membrane (ortholog) NW_004955413 2435717 2475158 + 102005918 AGCD01013546;AGCD01013547;AGCD01013548;AGCD01013549;AGCD01013550;GBDF01045939;XM_005378740 XP_005378797 MODEL 10084135 ncrna LOC106146435 uncharacterized LOC106146435 NW_004955478 7150095 7158040 + 106146435 AGCD01055947;GBDF01074591;XR_001230871 MODEL 8858310 protein-coding LOC102027667 cocaine esterase-like NW_004955433 23454986 23459051 + 102027667 AGCD01031965;GBCB01112609;XM_013516229 XP_013371683 MODEL 9035010 ncrna LOC102025255 uncharacterized LOC102025255 NW_004955422 16465199 16472125 + 102025255 AGCD01022898;GBCE01047979;XR_260891 MODEL 10157393 ncrna LOC106149274 uncharacterized LOC106149274 NW_004955441 9743247 9750318 + 106149274 AGCD01037029;AGCD01037030;GBDF01305348;XR_001235348 MODEL 10346772 protein-coding LOC106146988 olfactory receptor 4C13-like NW_004955511 360348 363838 - 106146988 AGCD01066330;XM_013506356 XP_013361810 MODEL 39131521 protein-coding SRD5A3 steroid 5 alpha-reductase 3 8873963 pseudo LOC102021434 elongation factor 1-alpha 1 pseudogene NW_004955414 28395548 28396556 - 102021434 AGCD01015681;XR_260242 MODEL 8708410 ncrna LOC102012439 uncharacterized LOC102012439 NW_004955421 24954942 25002542 - 102012439 AGCD01022225;AGCD01022226;AGCD01022227;GBCQ01157706;XR_001233829;XR_260827 MODEL 8860478 pseudo LOC102028324 60S ribosomal protein L37 pseudogene NW_004955431 21800032 21800318 + 102028324 AGCD01030501 MODEL 8800992 protein-coding Lbx1 ladybird homeobox 1 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); INVOLVED IN heart looping (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of neuron differentiation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Congenital Central Hypoventilation Syndrome 3 (ortholog); FOUND IN transcription regulator complex (ortholog) NW_004955485 9003329 9005987 + 102028421 AGCD01058739;GBCB01021735;GBCQ01007298;XM_005403879 XP_005403936 MODEL 8878592 ncrna LOC102008924 uncharacterized LOC102008924 NW_004955410 24913016 24966433 + 102008924 AGCD01011136;GBDK01310034;XR_259862 MODEL 9020884 pseudo LOC102018098 dnaJ homolog subfamily A member 1 pseudogene NW_004955420 13182480 13183950 + 102018098 AGCD01020916 MODEL 8712285 protein-coding LOC102023845 chromosome unknown open reading frame, human C14orf180 ASSOCIATED WITH hepatocellular carcinoma (ortholog) NW_004955538 3076578 3083867 + 102023845 AGCD01071145;GBDJ01239820;XM_005410829;XM_005410830;XM_005410831;XM_005410832;XM_005410833;XM_005410835;XM_013507905 XP_005410886;XP_005410887;XP_005410888;XP_005410889;XP_005410890;XP_005410892;XP_013363359 MODEL 9007218 protein-coding Tex14 testis expressed 14, intercellular bridge forming factor ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); cellular response to leukemia inhibitory factor (ortholog); intercellular bridge organization (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); prostate cancer (ortholog); spermatogenic failure 23 (ortholog); FOUND IN intercellular bridge (ortholog); kinetochore (ortholog); midbody (ortholog) NW_004955451 4206114 4296969 + 102016657 AGCD01043100;AGCD01043101;AGCD01043102;AGCD01043103;AGCD01043104;AGCD01043105;AGCD01043106;GBDF01048867;GBDK01377318;XM_013519211 XP_013374665 MODEL 10088559 ncrna LOC106148082 uncharacterized LOC106148082 NW_004955415 4509990 4510680 + 106148082 AGCD01015971;GBBH01225979;XR_001233212 MODEL 9052203 ncrna LOC102018476 uncharacterized LOC102018476 NW_004955458 9702392 9709705 - 102018476 AGCD01047660;GBDI01338963;XR_001236457 MODEL 9054534 protein-coding Padi1 peptidyl arginine deiminase 1 ENCODES a protein that exhibits calcium ion binding (ortholog); protein-arginine deiminase activity (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955527 1610643 1641953 - 102024159 AGCD01069411;GBDJ01003128;XM_005409818;XM_005409820;XM_013507413 XP_005409875;XP_005409877;XP_013362867 MODEL 8970534 protein-coding LOC102025586 olfactory receptor 2A1/2A42-like NW_004955491 490183 491124 + 102025586 AGCD01060337;XM_005404884 XP_005404941 MODEL 8821895 protein-coding Xpo4 exportin 4 ENCODES a protein that exhibits nuclear export signal receptor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN positive regulation of protein export from nucleus (ortholog); protein export from nucleus (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955497 1562945 1661379 - 102012451 AGCD01062465;AGCD01062466;GBDJ01386012;XM_005406312;XM_005406313;XM_013505464 XP_005406369;XP_005406370;XP_013360918 MODEL 9002716 ncrna LOC102029397 uncharacterized LOC102029397 NW_004955418 22493990 22536795 - 102029397 AGCD01019287;GBCB01121110;XR_260580 MODEL 10340606 ncrna LOC106146562 uncharacterized LOC106146562 NW_004955407 25653256 25660687 - 106146562 AGCD01007515;GBDK01046726;XR_001231051 MODEL 10229378 ncrna LOC106150098 uncharacterized LOC106150098 NW_004955406 23931360 23980352 + 106150098 AGCD01006186;GBDF01181440;XR_001236708 MODEL 8717510 ncrna LOC102020633 uncharacterized LOC102020633 NW_004955453 16423553 16456778 - 102020633 AGCD01044903;AGCD01044904;GBDI01378176;XR_001236202;XR_001236203;XR_001236204 MODEL 9010730 ncrna LOC102027669 uncharacterized LOC102027669 NW_004955524 1167102 1181132 - 102027669 AGCD01068738;GBDF01201489;XR_264646 MODEL 8771372 protein-coding Ndufaf1 NADH:ubiquinone oxidoreductase complex assembly factor 1 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH COVID-19 (ortholog); mitochondrial complex I deficiency (ortholog); nuclear type mitochondrial complex I deficiency 1 (ortholog); FOUND IN mitochondrial complex I intermediate assembly complex (ortholog); mitochondrion (ortholog) NW_004955416 8210198 8222986 - 102007427 AGCD01017037;GBBH01126304;XM_005381284 XP_005381341 MODEL 8878325 protein-coding LOC102024157 vomeronasal type-2 receptor 116-like NW_004955524 574634 590185 - 102024157 AGCD01068685;XM_013507187 XP_013362641 MODEL 8881967 ncrna LOC102010070 uncharacterized LOC102010070 NW_004955500 4830109 4994911 - 102010070 AGCD01063812;AGCD01063813;AGCD01063814;AGCD01063815;AGCD01063816;AGCD01063817;AGCD01063818;AGCD01063819;AGCD01063820;GBBH01147088;XR_001231473;XR_001231474;XR_001231475;XR_001231476;XR_001231477;XR_001231478;XR_001231479;XR_001231480;XR_001231481;XR_001231482;XR_001231483;XR_264227 MODEL 8726565 protein-coding LOC102003182 protamine-2 NW_004955442 7306731 7307449 + 102003182 AGCD01037623;GBDF01007122;XM_005391168 XP_005391225 MODEL 8872991 protein-coding Ermn ermin ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN actin filament organization (ortholog); morphogenesis of a branching structure (ortholog); regulation of cell projection organization (ortholog); FOUND IN cell cortex (ortholog); cytoplasm (ortholog); filopodium (ortholog) NW_004955449 16056735 16064734 + 102017079 AGCD01042208;GBDK01341423;XM_005393411 XP_005393468 MODEL 8843378 protein-coding Pold1 DNA polymerase delta 1, catalytic subunit ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); chromatin binding (ortholog); damaged DNA binding (ortholog); INVOLVED IN base-excision repair, gap-filling (ortholog); DNA biosynthetic process (ortholog); DNA replication (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH bile duct cancer (ortholog); breast cancer (ortholog); colon cancer (ortholog); FOUND IN chromosome, telomeric region (ortholog); delta DNA polymerase complex (ortholog); nucleoplasm (ortholog) NW_004955559 712375 730551 - 102020387 AGCD01073609;GBBH01102863;XM_005412790;XM_013509023;XM_013509024;XM_013509025;XM_013509026;XM_013509027 XP_005412847;XP_013364477;XP_013364478;XP_013364479;XP_013364480;XP_013364481 MODEL 8840224 protein-coding Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 ENCODES a protein that exhibits protein-lysine-acetyltransferase activity (ortholog); INVOLVED IN aerobic respiration (ortholog); anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); FOUND IN BLOC-1 complex (ortholog); BORC complex (ortholog); cytosol (ortholog) NW_004955458 3352442 3356224 + 102020885 AGCD01047296;GBDF01048251;XM_005397258 XP_005397315 MODEL 8974669 pseudo LOC102007388 pre-mRNA-splicing factor RBM22 pseudogene NW_004955402 42301725 42303062 - 102007388 AGCD01001038 MODEL 8830705 protein-coding Tmx1 thioredoxin related transmembrane protein 1 ENCODES a protein that exhibits disulfide oxidoreductase activity (ortholog); enzyme inhibitor activity (ortholog); protein disulfide isomerase activity (ortholog); INVOLVED IN negative regulation of platelet aggregation (ortholog); negative regulation of triglyceride biosynthetic process (ortholog); positive regulation of ERAD pathway (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); mitochondria-associated endoplasmic reticulum membrane contact site (ortholog) NW_004955409 11708867 11722205 - 102014218 AGCD01009520;AGCD01009521;GBDI01168278;XM_005376792 XP_005376849 MODEL 8790074 pseudo LOC102019635 60S acidic ribosomal protein P0 pseudogene NW_004955435 864236 865236 - 102019635 AGCD01032730 MODEL 8958064 ncrna LOC102015415 uncharacterized LOC102015415 NW_004955496 5673676 5679010 + 102015415 AGCD01062356;GBDI01253638;XR_264177 MODEL 9002057 protein-coding LOC102027007 actin-like NW_004955529 788205 790170 - 102027007 AGCD01069657;XM_005410094 XP_005410151 MODEL 8942158 pseudo LOC102005937 olfactory receptor 2S2-like NW_004955419 21770973 21771933 + 102005937 AGCD01020283 MODEL 8952253 protein-coding Pinlyp phospholipase A2 inhibitor and LY6/PLAUR domain containing NW_004955555 1316543 1322241 + 102016430 AGCD01073072;GBDF01268870;XM_005412532;XM_013508748 XP_005412589;XP_013364202 MODEL 10300655 ncrna LOC106148083 uncharacterized LOC106148083 NW_004955415 3829413 3850176 - 106148083 AGCD01015955;AGCD01015956;GBDF01042897;XR_001233213 MODEL 8986029 protein-coding Slc30a10 solute carrier family 30 member 10 ENCODES a protein that exhibits calcium:manganese antiporter activity (ortholog); manganese ion transmembrane transporter activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN cellular response to angiotensin (ortholog); epidermal growth factor receptor signaling pathway (ortholog); intracellular copper ion homeostasis (ortholog); ASSOCIATED WITH cholestasis (ortholog); dystonia (ortholog); genetic disease (ortholog); FOUND IN early endosome (ortholog); early endosome membrane (ortholog); Golgi apparatus (ortholog) NW_004955520 3631192 3641595 + 102004311 AGCD01068107;AGCD01068108;XM_005409285 XP_005409342 MODEL 8991887 protein-coding Trpm4 transient receptor potential cation channel subfamily M member 4 ENCODES a protein that exhibits ATP binding (ortholog); calcium channel activity (ortholog); calcium ion binding (ortholog); INVOLVED IN calcium ion transport (ortholog); calcium-mediated signaling (ortholog); cellular response to ATP (ortholog); ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrioventricular block (ortholog); Brugada syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); membrane (ortholog) NW_004955559 1539036 1581800 - 102022131 AGCD01073648;AGCD01073649;AGCD01073650;AGCD01073651;GBDJ01147170;XM_005412902;XM_005412903 XP_005412959;XP_005412960 MODEL 8768279 ncrna LOC102006276 uncharacterized LOC102006276 NW_004955435 16129063 16131676 + 102006276 AGCD01033295;GBCB01093390;XR_001234853;XR_261702 MODEL 8848976 ncrna LOC102009277 uncharacterized LOC102009277 NW_004955474 12346167 12355317 - 102009277 AGCD01054658;GBDK01287845;XR_001230737;XR_001230738 MODEL 8898855 pseudo LOC102026650 tubulin alpha-1B chain-like NW_004955491 5295030 5296362 - 102026650 AGCD01060477;XR_264038 MODEL 8878963 protein-coding LOC102019636 uncharacterized protein CXorf21-like NW_004955529 1282997 1299375 + 102019636 AGCD01069678;AGCD01069679;AGCD01069680;GBDK01060727;XM_005410075 XP_005410132 MODEL 8804283 protein-coding Shroom1 shroom family member 1 ENCODES a protein that exhibits actin filament binding (ortholog); myosin II binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); cell morphogenesis (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955408 4194296 4218616 - 102016242 AGCD01008091;AGCD01008092;AGCD01008093;AGCD01008094;GBBH01224044;GBCE01081633;XM_013507376 XP_013362830 MODEL 10346765 pseudo LOC106146312 RING finger and transmembrane domain-containing protein 1 pseudogene NW_004955547 359631 362673 + 106146312 AGCD01072151 MODEL 39133518 snrna U4 U4 spliceosomal RNA 8747479 protein-coding Ift25 intraflagellar transport 25 INVOLVED IN cilium assembly (ortholog); heart development (ortholog); kidney development (ortholog); ASSOCIATED WITH renal agenesis (ortholog); FOUND IN centrosome (ortholog); cilium (ortholog); intraciliary transport particle A (ortholog) NW_004955464 5299206 5324136 + 102007636 AGCD01050004;GBDF01224459;XM_005398544;XM_005398545;XM_005398546;XM_005398547;XM_005398549;XM_005398550;XM_013521718;XM_013521719 XP_005398601;XP_005398602;XP_005398603;XP_005398604;XP_005398606;XP_005398607;XP_013377172;XP_013377173 MODEL 8893515 pseudo LOC102004538 nuclease-sensitive element-binding protein 1 pseudogene NW_004955591 118340 236564 + 102004538 AGCD01076245;AGCD01076246;AGCD01076247;AGCD01076248;AGCD01076249;AGCD01076250 MODEL 8980422 protein-coding Lbx2 ladybird homeobox 2 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog) NW_004955424 11288897 11292143 + 102024928 AGCD01024561;GBDF01177258;XM_005385495 XP_005385552 MODEL 8919708 protein-coding LOC102012027 uncharacterized LOC102012027 NW_004955438 16193937 16196191 - 102012027 AGCD01035397;GBDI01015943;XM_013517279 XP_013372733 MODEL 9062117 protein-coding Phactr2 phosphatase and actin regulator 2 ASSOCIATED WITH Alzheimer's disease (ortholog); COVID-19 (ortholog); multiple sclerosis (ortholog) NW_004955436 16607279 16690412 - 102007273 AGCD01033926;AGCD01033927;AGCD01033928;GBDI01173932;GBDJ01062457;XM_013516614 XP_013372068 MODEL 8946154 protein-coding Tex15 testis expressed 15, meiosis and synapsis associated INVOLVED IN DNA methylation-dependent constitutive heterochromatin formation (ortholog); fertilization (ortholog); homeostasis of number of cells within a tissue (ortholog); ASSOCIATED WITH myoepithelioma (ortholog); spermatogenic failure 1 (ortholog); spermatogenic failure 25 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955463 7296204 7360935 - 102026955 AGCD01049726;GBDF01127895;XM_005398378;XM_013521569;XM_013521570;XM_013521571;XM_013521572 XP_005398435;XP_013377023;XP_013377024;XP_013377025;XP_013377026 MODEL 8889702 protein-coding LOC102008930 cytospin-B NW_004955467 1024739 1302878 + 102008930 AGCD01051247;AGCD01051248;AGCD01051249;AGCD01051250;AGCD01051251;AGCD01051252;AGCD01051253;AGCD01051254;AGCD01051255;AGCD01051256;GBBH01086340;XM_005399302;XM_005399304;XM_013522196;XM_013522197;XM_013522198;XM_013522199;XM_013522200;XM_013522201;XM_013522202;XM_013522203;XM_013522204;XM_013522205 XP_005399359;XP_005399361;XP_013377650;XP_013377651;XP_013377652;XP_013377653;XP_013377654;XP_013377655;XP_013377656;XP_013377657;XP_013377658;XP_013377659 MODEL 10152494 protein-coding LOC106146707 spidroin-2-like NW_004955493 7519388 7520569 - 106146707 AGCD01061196;GBBH01164510;XM_013504770 XP_013360224 MODEL 8768066 protein-coding LOC102025588 60S ribosomal protein L36-like NW_004955492 7792346 7806248 + 102025588 AGCD01060804;GBCE01042109;XM_013504673 XP_013360127 MODEL 8861977 protein-coding LOC102029399 putative vomeronasal receptor-like protein 4 NW_004955483 185597 186499 + 102029399 AGCD01057602;XM_005403420 XP_005403477 MODEL 10114777 ncrna LOC106146989 uncharacterized LOC106146989 NW_004955402 10989200 10989977 + 106146989 AGCD01000295;XR_001231682 MODEL 9020399 protein-coding LOC102025258 taste receptor type 2 member 143-like NW_004955494 228691 229575 - 102025258 AGCD01061370;XM_005405524 XP_005405581 MODEL 8747799 protein-coding Spatc1 spermatogenesis and centriole associated 1 ENCODES a protein that exhibits gamma-tubulin binding (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog) NW_004955454 2675857 2703729 + 102020200 AGCD01045028;AGCD01045029;GBDF01001260;XM_005395837 XP_005395894 MODEL 39131378 protein-coding NDUFAF2 NADH:ubiquinone oxidoreductase complex assembly factor 2 8950385 ncrna LOC102023846 uncharacterized LOC102023846 NW_004955540 1222373 1241453 - 102023846 AGCD01071297;GBDF01079077;XR_264817 MODEL 8732730 pseudo LOC102003479 tumor susceptibility gene 101 protein pseudogene NW_004955515 383004 383850 - 102003479 AGCD01067198;XR_264530 MODEL 8944647 protein-coding Kndc1 kinase non-catalytic C-lobe domain containing 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN cerebellar granule cell differentiation (ortholog); positive regulation of protein phosphorylation (ortholog); regulation of dendrite development (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); invasive ductal carcinoma (ortholog); FOUND IN dendrite (ortholog); guanyl-nucleotide exchange factor complex (ortholog); neuronal cell body (ortholog) NW_004955477 10792066 10850457 + 102014450 AGCD01055707;AGCD01055708;GBBH01116939;GBDF01014888;XM_005402083 XP_005402140 MODEL 39132075 snorna SNORD24 Small nucleolar RNA SNORD24 10094485 protein-coding LOC106146436 tumor necrosis factor receptor superfamily member 11A-like NW_004955478 7092115 7093772 - 106146436 AGCD01055941;GBBH01114612;GBBH01114613;XM_013503253 XP_013358707 MODEL 8925763 pseudo LOC102018480 nucleosome assembly protein 1-like 1 pseudogene NW_004955411 3844425 3845502 - 102018480 AGCD01011556 MODEL 8988113 ncrna LOC102030099 uncharacterized LOC102030099 NW_004955504 567476 572526 + 102030099 AGCD01064822;AGCD01064823;GBBH01016924;XR_001231550;XR_264272 MODEL 10089867 ncrna LOC106149275 uncharacterized LOC106149275 NW_004955442 7763570 7768715 - 106149275 AGCD01037628;GBDK01306787;XR_001235350 MODEL 8833621 protein-coding Srd5a3 steroid 5 alpha-reductase 3 ENCODES a protein that exhibits 3-oxo-5-alpha-steroid 4-dehydrogenase (NADP+) activity (ortholog); oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor (ortholog); polyprenal reductase activity (ortholog); INVOLVED IN dolichol-linked oligosaccharide biosynthetic process (ortholog); dolichyl monophosphate biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); cone dystrophy (ortholog); congenital disorder of glycosylation (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955447 15578661 15588218 - 102007064 AGCD01041060;GBCC01015353;GBCE01134156;XM_005392895 XP_005392952 MODEL 8704459 ncrna LOC102015418 uncharacterized LOC102015418 NW_004955424 21476497 21490967 + 102015418 AGCD01024898;GBDF01074469;XR_001234201;XR_261092 MODEL 8726943 pseudo LOC102021437 E3 SUMO-protein ligase PIAS2 pseudogene NW_004955415 14409004 14410892 - 102021437 AGCD01016298 MODEL 8732988 protein-coding Xpo5 exportin 5 ENCODES a protein that exhibits mRNA binding (ortholog); nuclear export signal receptor activity (ortholog); pre-miRNA binding (ortholog); INVOLVED IN pre-miRNA export from nucleus (ortholog); protein export from nucleus (ortholog); PARTICIPATES IN microRNA pathway; ribosome biogenesis pathway; ASSOCIATED WITH breast cancer (ortholog); colorectal cancer (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955437 9351045 9392396 - 102011478 AGCD01034527;AGCD01034528;GBDF01048032;XM_005389780;XM_013516820;XM_013516821 XP_005389837;XP_013372274;XP_013372275 MODEL 8817606 ncrna LOC102027009 uncharacterized LOC102027009 NW_004955532 2058121 2065989 - 102027009 AGCD01070213;AGCD01070214;XR_001232025;XR_001232026 MODEL 10146751 ncrna LOC106148084 uncharacterized LOC106148084 NW_004955415 31704158 31707213 + 106148084 AGCD01016692;XR_001233215 MODEL 8839454 ncrna LOC102027671 uncharacterized LOC102027671 NW_004955435 14989335 15035929 - 102027671 AGCD01033259;GBDF01007451;XR_001234874;XR_261699 MODEL 8984416 protein-coding LOC102006285 vegetative cell wall protein gp1-like NW_004955546 1258104 1261505 - 102006285 AGCD01072044;GBDF01260251;XM_005411765;XM_005411766 XP_005411822;XP_005411823 MODEL 8843804 ncrna LOC102010072 uncharacterized LOC102010072 NW_004955426 20756048 20787650 - 102010072 AGCD01026575;GBBH01059919;XR_001234330;XR_001234331;XR_001234332 MODEL 8852732 protein-coding Slc30a2 solute carrier family 30 member 2 ENCODES a protein that exhibits identical protein binding (ortholog); zinc ion transmembrane transporter activity (ortholog); zinc:proton antiporter activity (ortholog); INVOLVED IN intracellular zinc ion homeostasis (ortholog); zinc export across plasma membrane (ortholog); zinc ion import into lysosome (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neonatal Zinc Deficiency due to Low Breast Milk Zinc (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle membrane (ortholog); endosome membrane (ortholog) NW_004955452 5507614 5515669 - 102012051 AGCD01044037;GBDI01355605;XM_005394839 XP_005394896 MODEL 9035728 ncrna LOC102024158 uncharacterized LOC102024158 NW_004955435 18613685 18623159 + 102024158 AGCD01033408;GBDF01076618;XR_261722 MODEL 8877689 pseudo LOC102003185 protein phosphatase inhibitor 2 pseudogene NW_004955562 2132567 2195973 - 102003185 AGCD01074022;AGCD01074023;AGCD01074024;AGCD01074025;AGCD01074026;AGCD01074027;AGCD01074028;XM_005413094 MODEL 9004919 protein-coding LOC102018101 arylacetamide deacetylase-like 4 NW_004955486 1192855 1214886 - 102018101 AGCD01058932;AGCD01058933;AGCD01058934;AGCD01058935;GBCE01042716;XM_013504149 XP_013359603 MODEL 39133520 snrna U4 U4 spliceosomal RNA 8891956 protein-coding Scarf1 scavenger receptor class F member 1 ENCODES a protein that exhibits low-density lipoprotein particle binding (ortholog); scavenger receptor activity (ortholog); INVOLVED IN dendrite development (ortholog); neuron remodeling (ortholog); positive regulation of axon regeneration (ortholog); FOUND IN membrane (ortholog) NW_004955481 1534894 1547427 + 102018286 AGCD01056835;GBCB01022149;XM_005402613 XP_005402670 MODEL 8951694 protein-coding Pold2 DNA polymerase delta 2, accessory subunit INVOLVED IN DNA biosynthetic process (ortholog); DNA replication (ortholog); DNA-templated DNA replication (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; FOUND IN delta DNA polymerase complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955456 7853476 7860108 + 102021629 AGCD01046435;GBDF01080182;XM_005396671;XM_013520626 XP_005396728;XP_013376080 MODEL 8830696 pseudo LOC102012028 pre-mRNA 3' end processing protein WDR33 pseudogene NW_004955439 20471999 20472958 - 102012028 AGCD01036114 MODEL 8757015 protein-coding Tmx2 thioredoxin related transmembrane protein 2 ENCODES a protein that exhibits disulfide oxidoreductase activity (ortholog); identical protein binding (ortholog); INVOLVED IN brain development (ortholog); regulation of mitochondrion organization (ortholog); ASSOCIATED WITH Neurodevelopmental Disorder with Microcephaly, Cortical Malformations, and Spasticity (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); mitochondria-associated endoplasmic reticulum membrane contact site (ortholog); mitochondrial membrane (ortholog) NW_004955511 2632434 2641531 + 102021469 AGCD01066420;AGCD01066421;AGCD01066422;GBBH01065101;GBDF01045164;XM_005408009 XP_005408066 MODEL 8727017 protein-coding Padi2 peptidyl arginine deiminase 2 ENCODES a protein that exhibits histone H3R26 arginine deiminase activity (ortholog); nuclear estrogen receptor binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); estrogen receptor signaling pathway (ortholog); negative regulation of chemokine-mediated signaling pathway (ortholog); ASSOCIATED WITH COVID-19 (ortholog); rheumatoid arthritis (ortholog); FOUND IN cytoplasm (ortholog); euchromatin (ortholog) NW_004955527 1709307 1751332 + 102024948 AGCD01069414;GBCB01005607;XM_005409821 XP_005409878 MODEL 10329498 ncrna LOC106146563 uncharacterized LOC106146563 NW_004955484 9101042 9105514 + 106146563 AGCD01058406;GBBH01204237;XR_001231053 MODEL 8760564 pseudo LOC102012453 heterogeneous nuclear ribonucleoprotein A3-like NW_004955425 6920489 6940923 - 102012453 AGCD01025375;AGCD01025376 MODEL 8952658 protein-coding Phactr3 phosphatase and actin regulator 3 ENCODES a protein that exhibits actin binding (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955528 3894294 4041621 - 102008253 AGCD01069613;AGCD01069614;AGCD01069615;AGCD01069616;GBDJ01097569;XM_005410046 XP_005410103 MODEL 10336183 ncrna LOC106150099 uncharacterized LOC106150099 NW_004955464 5470613 5495391 - 106150099 AGCD01050008;AGCD01050009;GBCQ01109244;XR_001236707 MODEL 9062707 ncrna LOC102028327 uncharacterized LOC102028327 NW_004955516 2270058 2276642 + 102028327 AGCD01067452;GBDI01276992;XR_001231807;XR_264532 MODEL 8864558 protein-coding LOC102030100 uncharacterized LOC102030100 NW_004955505 5456002 5503419 - 102030100 AGCD01065149;AGCD01065150;XM_013505923 XP_013361377 MODEL 8860734 pseudo LOC102009279 60S ribosomal protein L34 pseudogene NW_004955477 5072715 5073707 + 102009279 AGCD01055590 MODEL 10159554 protein-coding LOC106146990 olfactory receptor 8H1-like NW_004955511 1070029 1070736 + 106146990 AGCD01066355;XM_013506364 XP_013361818 MODEL 8979984 protein-coding LOC102015419 spermatogenesis-associated protein 7 homolog NW_004955498 671164 805118 + 102015419 AGCD01062724;AGCD01062725;AGCD01062726;AGCD01062727;AGCD01062728;AGCD01062729;XM_013505520 XP_013360974 MODEL 9021432 protein-coding LOC102019638 HLA class II histocompatibility antigen, DRB1-15 beta chain-like NW_004955437 1121086 1145720 - 102019638 AGCD01034190;GBBH01035303;XM_005389450 XP_005389507 MODEL 8768395 ncrna LOC102012454 uncharacterized LOC102012454 NW_004955426 21276896 21279599 - 102012454 AGCD01026583;GBDF01235356;XR_261214 MODEL 8751490 protein-coding Shroom2 shroom family member 2 ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); beta-catenin binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); cell migration (ortholog); cell morphogenesis (ortholog); ASSOCIATED WITH Meniere's disease (ortholog); FOUND IN adherens junction (ortholog); apical junction complex (ortholog); apical plasma membrane (ortholog) NW_004955499 8031961 8103307 + 102027320 AGCD01063614;AGCD01063615;AGCD01063616;GBCQ01149920;GBDJ01063804;XM_013505603;XM_013505604 XP_013361057;XP_013361058 MODEL 8793469 protein-coding Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 ENCODES a protein that exhibits gamma-tubulin binding (ortholog); transcription factor binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); cerebral cortex development (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Sciatica (ortholog); FOUND IN BLOC-1 complex (ortholog); BORC complex (ortholog); centrosome (ortholog) NW_004955507 6138511 6144823 - 102021692 AGCD01065697;GBDI01131466;XM_005407689;XM_005407690;XR_264384 XP_005407746;XP_005407747 MODEL 9044007 protein-coding Spatc1l spermatogenesis and centriole associated 1 like ENCODES a protein that exhibits identical protein binding (ortholog); protein kinase A regulatory subunit binding (ortholog); INVOLVED IN actin polymerization or depolymerization (ortholog); positive regulation of cAMP-dependent protein kinase activity (ortholog); positive regulation of cAMP/PKA signal transduction (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); sperm head-tail coupling apparatus (ortholog) NW_004955407 42621167 42629350 - 102017632 AGCD01007894;GBDF01009206;XM_005375929 XP_005375986 MODEL 10114771 protein-coding LOC106146313 interferon-inducible GTPase 1-like NW_004955408 2270021 2309765 - 106146313 AGCD01008003;GBCE01114867;GBCQ01069900;XM_013508123 XP_013363577 MODEL 8719759 protein-coding LOC102007390 EKC/KEOPS complex subunit LAGE3-like NW_004955595 891199 900679 + 102007390 AGCD01076488;AGCD01076489;AGCD01076490;GBDK01408734;XM_005414678 XP_005414735 MODEL 8815670 protein-coding Lca5 lebercilin LCA5 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN intraciliary transport (ortholog); photoreceptor cell maintenance (ortholog); ASSOCIATED WITH blindness (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN axoneme (ortholog); ciliary basal body (ortholog); ciliary tip (ortholog) NW_004955502 7325650 7373641 - 102008241 AGCD01064440;AGCD01064441;GBDI01325151;XM_013505843 XP_013361297 MODEL 9053767 pseudo LOC102024160 nuclear receptor-binding factor 2-like NW_004955435 9380995 9387375 - 102024160 AGCD01033048;AGCD01033049 MODEL 8745741 protein-coding Ift27 intraflagellar transport 27 ENCODES a protein that exhibits protein carrier activity (ortholog); INVOLVED IN cochlea development (ortholog); inner ear receptor cell stereocilium organization (ortholog); intracellular protein transport (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 19 (ortholog); fundus dystrophy (ortholog); FOUND IN centrosome (ortholog); cilium (ortholog); cytoplasm (ortholog) NW_004955413 23295549 23310824 - 102021645 AGCD01014329;GBCE01172334;XM_005379168;XM_013511657;XM_013511658;XM_013511659;XR_001233043 XP_005379225;XP_013367111;XP_013367112;XP_013367113 MODEL 8907387 protein-coding Pinx1 PIN2 (TERF1) interacting telomerase inhibitor 1 ENCODES a protein that exhibits protein-containing complex binding (ortholog); telomerase inhibitor activity (ortholog); telomerase RNA binding (ortholog); INVOLVED IN mitotic metaphase chromosome alignment (ortholog); negative regulation of G2/M transition of mitotic cell cycle (ortholog); negative regulation of protein ubiquitination (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN chromosome, telomeric region (ortholog); kinetochore (ortholog); nuclear chromosome (ortholog) NW_004955403 52284378 52361924 - 102024413 AGCD01003003;GBCB01056282;XM_005373807;XM_005373809 XP_005373864;XP_005373866 MODEL 8994900 ncrna LOC102008932 uncharacterized LOC102008932 NW_004955468 2457664 2458509 + 102008932 AGCD01051818;GBDK01424972;XR_263377 MODEL 9043830 ncrna LOC102012030 uncharacterized LOC102012030 NW_004955442 16080957 16097609 + 102012030 AGCD01037891;GBDF01225468;XR_262160;XR_262161 MODEL 8980648 protein-coding Pold3 DNA polymerase delta 3, accessory subunit ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN DNA biosynthetic process (ortholog); DNA-templated DNA replication (ortholog); error-prone translesion synthesis (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); immunodeficiency 122 (ortholog); FOUND IN delta DNA polymerase complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955414 17064379 17111946 - 102006120 AGCD01015233;AGCD01015234;GBDF01128109;XM_005379914;XM_005379915 XP_005379971;XP_005379972 MODEL 10355913 ncrna LOC106149276 uncharacterized LOC106149276 NW_004955442 8520572 8565264 - 106149276 AGCD01037647;XR_001235351 MODEL 8756375 ncrna LOC102018485 uncharacterized LOC102018485 NW_004955468 12167937 12170801 - 102018485 AGCD01052145;GBCQ01188108;XR_001236937;XR_263417 MODEL 9026302 protein-coding LOC102026653 translation initiation factor IF-2-like NW_004955424 18054357 18057481 + 102026653 AGCD01024777;GBDJ01124438;XM_005385679;XM_005385680;XM_005385681;XM_005385682 XP_005385736;XP_005385737;XP_005385738;XP_005385739 MODEL 8994561 protein-coding LOC102025259 spermatogenesis-associated protein 31E1-like NW_004955422 23945051 23950044 - 102025259 AGCD01023211;GBDF01157943;GBDF01250244;XM_005384977 XP_005385034 MODEL 8802108 protein-coding Ermp1 endoplasmic reticulum metallopeptidase 1 INVOLVED IN cellular response to oxidative stress (ortholog); endoplasmic reticulum unfolded protein response (ortholog); ovarian follicle development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); chronic kidney disease (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955434 9772667 9825048 - 102012355 AGCD01032309;AGCD01032310;GBDF01156541;XM_013516296 XP_013371750 MODEL 8955068 protein-coding Ndufaf2 NADH:ubiquinone oxidoreductase complex assembly factor 2 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN cilium assembly (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); negative regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH genetic disease (ortholog); Leigh disease (ortholog); Metabolic Brain Diseases, Inborn (ortholog); FOUND IN mitochondrion (ortholog) NW_004955446 7345467 7439885 - 102003186 AGCD01040112;AGCD01040113;GBDF01049272;XM_013518417;XM_013518418;XR_001235670;XR_001235671 XP_013373871;XP_013373872 MODEL 8853953 protein-coding LOC102023850 zinc finger protein 433-like NW_004955546 159991 288321 + 102023850 AGCD01071954;AGCD01071955;AGCD01071956;AGCD01071957;AGCD01071958;AGCD01071959;AGCD01071960;AGCD01071961;AGCD01071962;GBDJ01241204;XM_013508418 XP_013363872 MODEL 9033701 ncrna LOC102005939 uncharacterized LOC102005939 NW_004955420 14870439 14874125 + 102005939 AGCD01020956;GBDI01175768;XR_001233663;XR_001233664;XR_001233665 MODEL 8779027 protein-coding LOC102004541 aldehyde oxidase 4 NW_004955403 694922 799923 - 102004541 AGCD01001705;AGCD01001706;AGCD01001707;AGCD01001708;GBBH01002989;XM_005373240;XM_005373242;XM_013511853;XM_013511857 XP_005373297;XP_005373299;XP_013367307;XP_013367311 MODEL 8743377 ncrna LOC102003187 uncharacterized LOC102003187 NW_004955574 857172 858868 - 102003187 AGCD01075135;GBBH01101002;XR_265062 MODEL 8832954 protein-coding Tex19 testis expressed 19 ENCODES a protein that exhibits piRNA binding (ortholog); INVOLVED IN male meiotic nuclear division (ortholog); spermatogenesis (ortholog); transposable element silencing (ortholog); FOUND IN nucleus (ortholog) NW_004955506 773128 775155 - 102010925 AGCD01065235;GBDF01251542;XM_005407204 XP_005407261 MODEL 10083622 ncrna LOC106146437 uncharacterized LOC106146437 NW_004955479 10963383 10969876 - 106146437 AGCD01056570;XR_001230872 MODEL 8806346 protein-coding Kng1 kininogen 1 ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity (ortholog); hormone activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN negative regulation of blood coagulation (ortholog); negative regulation of cell adhesion (ortholog); negative regulation of proteolysis (ortholog); PARTICIPATES IN kallikrein-kinin cascade pathway; kinin signaling pathway; syndecan signaling pathway; ASSOCIATED WITH acquired angioedema (ortholog); acute kidney failure (ortholog); allergic disease (ortholog); FOUND IN extracellular region (ortholog) NW_004955420 20989197 21016084 - 102029517 AGCD01021118;AGCD01021119;GBDF01225377;XM_005383265;XM_005383266;XM_013513316 XP_005383322;XP_005383323;XP_013368770 MODEL 8994906 protein-coding Trpm5 transient receptor potential cation channel subfamily M member 5 ENCODES a protein that exhibits calcium-activated cation channel activity (ortholog); monoatomic ion channel activity (ortholog); potassium channel activity (ortholog); INVOLVED IN monoatomic ion transmembrane transport (ortholog); positive regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog) NW_004955422 14180067 14202041 - 102009068 AGCD01022855;GBBH01106809;XM_013514348;XM_013514349 XP_013369802;XP_013369803 MODEL 8885235 pseudo LOC102029403 small ubiquitin-related modifier 2 pseudogene NW_004955420 14375766 14376316 - 102029403 AGCD01020943;XM_005383192;XM_005383193 MODEL 9066635 protein-coding LOC102020634 beclin-2-like NW_004955406 38072602 38073867 + 102020634 AGCD01006588;XM_013503274 XP_013358728 MODEL 8708841 pseudo LOC102025596 RNA-binding protein 6 pseudogene NW_004955495 807714 809120 + 102025596 AGCD01061654 MODEL 8802335 protein-coding Padi3 peptidyl arginine deiminase 3 ENCODES a protein that exhibits identical protein binding (ortholog); protein-arginine deiminase activity (ortholog); INVOLVED IN L-arginine catabolic process (ortholog); ASSOCIATED WITH Central Centrifugal Cicatricial Alopecia (ortholog); genetic disease (ortholog); Uncombable Hair Syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955527 1582065 1608455 - 102023070 AGCD01069410;AGCD01069411;GBDF01049983;XM_005409816;XM_013507408;XM_013507409;XM_013507410;XR_001231973 XP_005409873;XP_013362862;XP_013362863;XP_013362864 MODEL 8846073 ncrna LOC102027010 uncharacterized LOC102027010 NW_004955437 16806341 16810375 - 102027010 AGCD01034711;GBCE01063246;XR_001235005;XR_001235006;XR_261883 MODEL 8980668 pseudo LOC102006293 protein kinase C iota type pseudogene NW_004955443 17422253 17426023 + 102006293 AGCD01038579 MODEL 9002072 protein-coding LOC102027673 2-oxoglutarate dehydrogenase, mitochondrial-like NW_004955529 1327579 1355065 - 102027673 AGCD01069680;AGCD01069681;XM_013507525 XP_013362979 MODEL 8972506 protein-coding Phactr4 phosphatase and actin regulator 4 ENCODES a protein that exhibits actin binding (ortholog); protein phosphatase 1 binding (ortholog); protein phosphatase activator activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); closure of optic fissure (ortholog); enteric nervous system development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN lamellipodium (ortholog) NW_004955452 7505647 7593302 + 102015916 AGCD01044166;AGCD01044167;AGCD01044168;AGCD01044169;AGCD01044170;AGCD01044171;AGCD01044172;AGCD01044173;AGCD01044174;GBBH01106810;XM_005394951;XM_005394953;XM_005394954;XM_013519485;XM_013519486;XM_013519487;XM_013519488 XP_005395008;XP_005395010;XP_005395011;XP_013374939;XP_013374940;XP_013374941;XP_013374942 MODEL 8978886 protein-coding LOC102025261 olfactory receptor 7C1-like NW_004955495 785679 795701 - 102025261 AGCD01061653;XM_013505047 XP_013360501 MODEL 8736685 pseudo LOC102003482 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 pseudogene NW_004955535 3151906 3152089 + 102003482 AGCD01070687 MODEL 8902042 protein-coding Slc30a3 solute carrier family 30 member 3 ENCODES a protein that exhibits AP-3 adaptor complex binding (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN positive regulation of transport (ortholog); zinc ion import into lysosome (ortholog); zinc ion import into synaptic vesicle (ortholog); ASSOCIATED WITH Febrile Seizures (ortholog); Zinc Deficiency (ortholog); FOUND IN clathrin-sculpted vesicle (ortholog); cytoplasm (ortholog); cytoplasmic vesicle membrane (ortholog) NW_004955469 9235159 9254291 - 102025675 AGCD01052497;AGCD01052498;GBDF01003772;XM_005400475;XM_005400476;XM_005400477;XM_013522596;XM_013522597;XM_013522598 XP_005400532;XP_005400533;XP_005400534;XP_013378050;XP_013378051;XP_013378052 MODEL 8795758 ncrna LOC102018106 uncharacterized LOC102018106 NW_004955422 17085787 17105838 - 102018106 AGCD01022909;AGCD01022910;AGCD01022911;AGCD01022912;GBDJ01421050;XR_001233992 MODEL 39132080 snorna SNORD24 Small nucleolar RNA SNORD24 8836403 ncrna LOC102019644 uncharacterized LOC102019644 NW_004955441 14802468 14824681 - 102019644 AGCD01037222;AGCD01037223;AGCD01037224;GBCB01060978;XR_262082 MODEL 39133431 snrna U4 U4 spliceosomal RNA 8934593 pseudo LOC102007392 aldose reductase-related protein 2 pseudogene NW_004955450 13309903 13310837 + 102007392 AGCD01042733 MODEL 8827770 protein-coding Tmx3 thioredoxin related transmembrane protein 3 ENCODES a protein that exhibits protein disulfide isomerase activity (ortholog); protein-disulfide reductase activity (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955402 52271705 52315795 - 102030257 AGCD01001321;AGCD01001322;AGCD01001323;GBCB01075702;XM_005373044 XP_005373101 MODEL 10222708 ncrna LOC106146564 uncharacterized LOC106146564 NW_004955402 11479872 11488290 - 106146564 AGCD01000301;GBCE01163757;XR_001231063 MODEL 10066968 ncrna LOC106150100 uncharacterized LOC106150100 NW_004955464 2671479 2673194 - 106150100 AGCD01049965;GBDF01114972;XR_001236709 MODEL 10132722 ncrna LOC106148085 uncharacterized LOC106148085 NW_004955415 4083936 4103107 - 106148085 AGCD01015964;AGCD01015965;GBDF01152096;XR_001233217 MODEL 8842654 protein-coding LOC102021446 olfactory receptor 6F1 NW_004955418 30343310 30344236 - 102021446 AGCD01019514;XM_005382336 XP_005382393 MODEL 8990354 protein-coding Ift38 intraflagellar transport 38 INVOLVED IN axoneme assembly (ortholog); cilium assembly (ortholog); floor plate formation (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); Joubert syndrome (ortholog); Leber congenital amaurosis (ortholog); FOUND IN centrosome (ortholog); ciliary base (ortholog); ciliary tip (ortholog) NW_004955442 13843952 13890082 - 102023202 AGCD01037793;AGCD01037794;AGCD01037795;GBDK01004619;XM_005391336;XM_005391337;XM_005391338;XM_005391339;XM_005391340 XP_005391393;XP_005391394;XP_005391395;XP_005391396;XP_005391397 MODEL 8962134 protein-coding LOC102018487 olfactory receptor 1030-like NW_004955414 23728226 23729164 + 102018487 AGCD01015518;XM_005380523 XP_005380580 MODEL 10190571 protein-coding LOC106146708 translation initiation factor IF-2-like NW_004955493 7531740 7532629 + 106146708 AGCD01061198;GBBH01032572;XM_013504771 XP_013360225 MODEL 9048668 pseudo LOC102015420 pescadillo homolog pseudogene NW_004955424 12835886 12840197 - 102015420 AGCD01024620 MODEL 10101744 ncrna LOC106146991 uncharacterized LOC106146991 NW_004955407 28546571 28573832 - 106146991 AGCD01007589;XR_001231680 MODEL 8834226 pseudo LOC102030110 mitochondrial carnitine/acylcarnitine carrier protein-like NW_004955432 14457676 14458941 + 102030110 AGCD01031043 MODEL 8887328 protein-coding LOC102020636 mucin-5AC NW_004955407 5064489 5191333 - 102020636 AGCD01006899;AGCD01006900;AGCD01006901;AGCD01006902;AGCD01006903;AGCD01006904;AGCD01006905;AGCD01006906;AGCD01006907;GBDF01010817;XM_005375519;XM_005375520;XM_005375521;XM_005375522;XM_005375523;XM_005375524;XM_005375525 XP_005375576;XP_005375577;XP_005375578;XP_005375579;XP_005375580;XP_005375581;XP_005375582 MODEL 9016048 pseudo LOC102010073 nef-associated protein 1 pseudogene NW_004955503 3250978 3252092 - 102010073 AGCD01064620 MODEL 8879911 ncrna LOC102021447 uncharacterized LOC102021447 NW_004955419 7019339 7024396 - 102021447 AGCD01019869;GBDF01146333;XR_260613 MODEL 8763200 protein-coding Spats1 spermatogenesis associated serine rich 1 NW_004955437 9952360 9984392 + 102024050 AGCD01034552;AGCD01034553;AGCD01034554;AGCD01034555;GBDF01084545;XM_005389820;XM_013517014;XM_013517015 XP_005389877;XP_013372468;XP_013372469 MODEL 9012088 protein-coding Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 ENCODES a protein that exhibits AP-3 adaptor complex binding (ortholog); transmembrane protein transporter activity (ortholog); INVOLVED IN anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); blood coagulation (ortholog); ASSOCIATED WITH genetic disease (ortholog); Hermansky-Pudlak syndrome (ortholog); Hermansky-Pudlak syndrome 8 (ortholog); FOUND IN BLOC-1 complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955555 2183752 2186154 + 102022235 AGCD01073131;AGCD01073132;GBBH01208027;GBDK01228953;XM_013508764 XP_013364218 MODEL 8798244 protein-coding Ndufaf3 NADH:ubiquinone oxidoreductase complex assembly factor 3 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH COVID-19 (ortholog); genetic disease (ortholog); mitochondrial complex I deficiency (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955532 1045854 1046738 + 102007054 AGCD01070164;GBBH01035419;GBDI01069498;XM_013507583 XP_013363037 MODEL 8813649 protein-coding Scarf2 scavenger receptor class F member 2 ENCODES a protein that exhibits scavenger receptor activity (ortholog); INVOLVED IN heterophilic cell-cell adhesion (ortholog); ASSOCIATED WITH genetic disease (ortholog); microcephaly (ortholog); spermatogenic failure 52 (ortholog) NW_004955442 18995253 19006499 - 102018441 AGCD01038028;AGCD01038029;GBBH01117350;GBDI01256676;XM_013517989 XP_013373443 MODEL 8715284 pseudo LOC102004542 zinc finger protein 14-like NW_004955607 5112 93169 + 102004542 AGCD01076967;AGCD01076968;AGCD01076969;AGCD01076970;AGCD01076971;AGCD01076972;AGCD01076973;AGCD01076974;XM_005414908 MODEL 10267238 protein-coding LOC106146314 NACHT, LRR and PYD domains-containing protein 1-like NW_004955467 11059026 11112058 - 106146314 AGCD01051598;AGCD01051599;AGCD01051600;GBDJ01372473;XM_013522165 XP_013377619 MODEL 8742749 protein-coding LOC102006296 zinc finger protein 709-like NW_004955569 1353747 1371972 - 102006296 AGCD01074650;AGCD01074651;GBCE01006118;XM_005413500 XP_005413557 MODEL 9062386 protein-coding Srebf1 sterol regulatory element binding transcription factor 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN cellular response to fatty acid (ortholog); cellular response to insulin stimulus (ortholog); cellular response to starvation (ortholog); PARTICIPATES IN mTOR signaling pathway; sterol regulatory element-binding protein signaling pathway; triacylglycerol metabolic pathway; ASSOCIATED WITH alcoholic hepatitis (ortholog); atherosclerosis (ortholog); coronary artery disease (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); membrane (ortholog) NW_004955577 171425 183669 + 102016535 AGCD01075383;AGCD01075384;GBCE01033218;XM_013509620 XP_013365074 MODEL 8897538 ncrna LOC102024162 uncharacterized LOC102024162 NW_004955437 1572617 1575264 - 102024162 AGCD01034218;GBDF01220897;XR_261824 MODEL 8727323 protein-coding LOC102005943 myoD family inhibitor domain-containing protein-like NW_004955421 17734841 17752220 + 102005943 AGCD01022030;XM_005383926 XP_005383983 MODEL 10095129 ncrna LOC106146438 uncharacterized LOC106146438 NW_004955479 5282625 5296976 - 106146438 AGCD01056342;AGCD01056343;XR_001230873 MODEL 8875611 ncrna LOC102012033 uncharacterized LOC102012033 NW_004955444 1600025 1605604 + 102012033 AGCD01038732;GBDF01041654;XR_001235529 MODEL 8842395 protein-coding LOC102009284 uncharacterized LOC102009284 NW_004955420 26735389 26736424 + 102009284 AGCD01021427;GBDF01043434;XM_005383475 XP_005383532 MODEL 8714998 pseudo LOC102026661 acyl-protein thioesterase 1-like NW_004955430 8305298 8308149 - 102026661 AGCD01029385 MODEL 8856369 protein-coding Pold4 DNA polymerase delta 4, accessory subunit INVOLVED IN DNA-templated DNA replication (ortholog); positive regulation of endothelial cell proliferation (ortholog); PARTICIPATES IN mismatch repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH intellectual disability (ortholog); FOUND IN delta DNA polymerase complex (ortholog); nucleus (ortholog) NW_004955422 18116604 18118280 + 102020020 AGCD01022937;GBDJ01139891;XM_005384335;XM_005384336 XP_005384392;XP_005384393 MODEL 8782395 protein-coding Ern1 endoplasmic reticulum to nucleus signaling 1 ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); endonuclease activity (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to manganese ion (ortholog); PARTICIPATES IN endoplasmic reticulum stress - the unfolded protein response pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); Acute-On-Chronic Liver Failure (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN AIP1-IRE1 complex (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955478 7720664 7803662 + 102028189 AGCD01055988;AGCD01055989;AGCD01055990;AGCD01055991;GBBH01142310;GBDF01040833;XM_013503183 XP_013358637 MODEL 8961022 protein-coding Shroom3 shroom family member 3 ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); columnar/cuboidal epithelial cell development (ortholog); neural tube closure (ortholog); FOUND IN adherens junction (ortholog); apical junction complex (ortholog); apical part of cell (ortholog) NW_004955433 1135589 1423449 + 102004844 AGCD01031348;AGCD01031349;AGCD01031350;AGCD01031351;AGCD01031352;AGCD01031353;AGCD01031354;AGCD01031355;AGCD01031356;GBBH01187068;XM_013516209 XP_013371663 MODEL 8937817 pseudo LOC102023856 speckle-type POZ protein pseudogene NW_004955560 87944 89059 + 102023856 AGCD01073707;AGCD01073708;XM_005412990 MODEL 9021449 protein-coding Lca5l lebercilin LCA5 like NW_004955407 38176533 38220781 - 102020088 AGCD01007798;AGCD01007799;GBBH01037007;GBDF01048282;XM_013504856;XM_013504861;XM_013504865 XP_013360310;XP_013360315;XP_013360319 MODEL 39133432 snrna U4 U4 spliceosomal RNA 8919046 protein-coding LOC102018488 uncharacterized LOC102018488 NW_004955473 10382694 10390790 - 102018488 AGCD01054094;GBDF01014963;XM_005401278 XP_005401335 MODEL 8732721 protein-coding LOC102003190 class I histocompatibility antigen, B alpha chain-like NW_004955583 377680 382207 + 102003190 AGCD01075815;AGCD01075816;GBCE01000219;GBDK01001528;XM_013509791 XP_013365245 MODEL 8729461 protein-coding LOC102008935 tripartite motif-containing protein 5-like NW_004955414 21565273 21579442 - 102008935 AGCD01015423;GBDI01215630;XM_013512005;XM_013512006 XP_013367459;XP_013367460 MODEL 8739478 protein-coding Pip4k2a phosphatidylinositol-5-phosphate 4-kinase type 2 alpha ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); 1-phosphatidylinositol-5-phosphate 4-kinase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process (ortholog); autophagosome-lysosome fusion (ortholog); megakaryocyte development (ortholog); PARTICIPATES IN phosphoinositide metabolic pathway; ASSOCIATED WITH melanoma (ortholog); FOUND IN autophagosome (ortholog); cell body (ortholog); cytoplasm (ortholog) NW_004955429 6231135 6399672 + 102012012 AGCD01028545;AGCD01028546;AGCD01028547;GBDF01014622;XM_005387233 XP_005387290 MODEL 8784055 pseudo LOC102028328 polycomb complex protein BMI-1 pseudogene NW_004955433 459075 460198 - 102028328 AGCD01031323 MODEL 8853141 ncrna LOC102025597 uncharacterized LOC102025597 NW_004955496 556251 557343 - 102025597 AGCD01062235;GBCB01110648;XR_264171 MODEL 9067626 protein-coding Spats2 spermatogenesis associated serine rich 2 FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955500 8174233 8300424 + 102018308 AGCD01063983;AGCD01063984;AGCD01063985;AGCD01063986;GBDF01304771;XM_013505714;XM_013505715 XP_013361168;XP_013361169 MODEL 8856160 pseudo LOC102012457 charged multivesicular body protein 5-like NW_004955509 3240394 3241053 + 102012457 AGCD01066019 MODEL 8772168 protein-coding Trpm6 transient receptor potential cation channel subfamily M member 6 ENCODES a protein that exhibits calcium ion transmembrane transporter activity (ortholog); magnesium ion transmembrane transporter activity (ortholog); monoatomic cation channel activity (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); magnesium ion transmembrane transport (ortholog); metal ion transport (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); Eye Abnormalities (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); brush border membrane (ortholog); nucleus (ortholog) NW_004955512 4179194 4323523 + 102006059 AGCD01066733;AGCD01066734;AGCD01066735;AGCD01066736;AGCD01066737;AGCD01066738;AGCD01066739;AGCD01066740;AGCD01066741;GBDJ01377962;XM_005408321;XM_013506547 XP_005408378;XP_013362001 MODEL 10346100 ncrna LOC106150101 uncharacterized LOC106150101 NW_004955464 12711358 12726752 + 106150101 AGCD01050219;AGCD01050220;AGCD01050221;XR_001236715 MODEL 8932570 ncrna LOC102027680 uncharacterized LOC102027680 NW_004955439 9524812 9528438 - 102027680 AGCD01035840;GBCB01086529;XR_261975 MODEL 8850193 protein-coding Padi4 peptidyl arginine deiminase 4 ENCODES a protein that exhibits calcium ion binding (ortholog); histone arginine deiminase activity (ortholog); histone H3R17 arginine deiminase activity (ortholog); INVOLVED IN chromatin organization (ortholog); chromatin remodeling (ortholog); negative regulation of heterochromatin formation (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955527 1536917 1560508 - 102022736 AGCD01069407;GBBH01115825;XM_005409815;XM_013507411;XM_013507412 XP_005409872;XP_013362865;XP_013362866 MODEL 8907752 protein-coding Phaf1 phagophore assembly factor 1 ENCODES a protein that exhibits glutamate receptor binding (ortholog); PDZ domain binding (ortholog); INVOLVED IN Golgi to plasma membrane protein transport (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); phagophore assembly site (ortholog) NW_004955484 9466880 9491176 - 102016597 AGCD01058415;AGCD01058416;AGCD01058417;GBCB01038540;XM_005403701;XM_013503960 XP_005403758;XP_013359414 MODEL 8726571 pseudo LOC102003484 RNA-binding protein 25 pseudogene NW_004955437 14612893 14618799 - 102003484 AGCD01034678 MODEL 8971796 pseudo LOC102015423 nuclease-sensitive element-binding protein 1 pseudogene NW_004955427 22766997 22772487 + 102015423 AGCD01027476;XR_261285 MODEL 8932036 protein-coding Tex2 testis expressed 2 ASSOCIATED WITH COVID-19 (ortholog) NW_004955478 7616196 7689136 + 102015951 AGCD01055983;AGCD01055984;AGCD01055985;AGCD01055986;GBDF01303240;XM_005402171;XM_005402172;XM_013503181;XM_013503182 XP_005402228;XP_005402229;XP_013358635;XP_013358636 MODEL 8760239 protein-coding Ift43 intraflagellar transport 43 INVOLVED IN cilium assembly (ortholog); intraciliary retrograde transport (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); connective tissue disease (ortholog); cranioectodermal dysplasia (ortholog); FOUND IN centriole (ortholog); cilium (ortholog); intercellular bridge (ortholog) NW_004955438 58503 144675 + 102027232 AGCD01034940;AGCD01034941;GBBH01062070;XM_005390147 XP_005390204 MODEL 8892776 ncrna LOC102007395 uncharacterized LOC102007395 NW_004955451 5460378 5468253 + 102007395 AGCD01043168;GBBH01102354;XR_262581 MODEL 8755113 protein-coding Knl1 kinetochore scaffold 1 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN attachment of meiotic spindle microtubules to kinetochore (ortholog); attachment of spindle microtubules to kinetochore (ortholog); chromosome segregation (ortholog); ASSOCIATED WITH autosomal recessive primary microcephaly (ortholog); COVID-19 (ortholog); Familial Prostate Cancer (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); kinetochore (ortholog) NW_004955416 7498983 7561620 + 102024004 AGCD01016984;AGCD01016985;AGCD01016986;AGCD01016987;AGCD01016988;AGCD01016989;AGCD01016990;GBBH01122002;XM_005381250;XM_005381251;XM_005381252 XP_005381307;XP_005381308;XP_005381309 MODEL 8897527 ncrna LOC102023857 uncharacterized LOC102023857 NW_004955446 5212115 5220132 + 102023857 AGCD01040059;AGCD01040060;GBDF01084434;XR_262367 MODEL 10351730 ncrna LOC106149277 uncharacterized LOC106149277 NW_004955442 9598267 9616531 - 106149277 AGCD01037686;GBDI01246361;XR_001235352 MODEL 10221247 ncrna LOC106146565 uncharacterized LOC106146565 NW_004955484 7285936 7318786 - 106146565 AGCD01058323;AGCD01058324;AGCD01058325;GBDF01224515;XR_001231057 MODEL 9002721 ncrna LOC102029406 uncharacterized LOC102029406 NW_004955489 4556050 4616160 - 102029406 AGCD01059908;AGCD01059909;GBDI01302954;XR_001231196;XR_001231198;XR_001231199;XR_001231200;XR_001231201;XR_264021;XR_264022 MODEL 8814121 protein-coding LOC102004544 histone H3-like NW_004955403 18749690 18755615 - 102004544 AGCD01002110;GBDI01222345;XM_005373397 XP_005373454 MODEL 10293824 protein-coding LOC106146315 leukocyte immunoglobulin-like receptor subfamily B member 5 NW_004955567 1739246 1741986 + 106146315 AGCD01074489;GBDI01223513;XM_013509234 XP_013364688 MODEL 8817913 pseudo LOC102006298 heat shock factor-binding protein 1 pseudogene NW_004955582 64495 67098 - 102006298 AGCD01075739;AGCD01075740 MODEL 8956244 pseudo LOC102027011 cyclin-K-like NW_004955437 19158261 19160811 + 102027011 AGCD01034835 MODEL 8730198 pseudo LOC102012039 creatine kinase U-type, mitochondrial pseudogene NW_004955447 18787639 18792112 - 102012039 AGCD01041191 MODEL 8791362 pseudo LOC102019647 dnaJ homolog subfamily B member 6-like NW_004955552 1386778 1387533 + 102019647 AGCD01072771;XR_264925 MODEL 8871430 pseudo LOC102018108 60S ribosomal protein L9 pseudogene NW_004955424 10648402 10648984 - 102018108 AGCD01024523 MODEL 10170948 protein-coding LOC106146992 olfactory receptor 8K3-like NW_004955511 1284850 1285626 + 106146992 AGCD01066362;XM_013506370 XP_013361824 MODEL 8960352 ncrna LOC102030111 uncharacterized LOC102030111 NW_004955433 5645254 5648113 + 102030111 AGCD01031514;GBDF01223398;XR_261561 MODEL 8882215 pseudo LOC102021449 pyrethroid hydrolase Ces2e-like NW_004955484 9684942 9693526 - 102021449 AGCD01058425 MODEL 9040258 pseudo LOC102010074 mortality factor 4-like protein 1 pseudogene NW_004955427 22903386 22904350 - 102010074 AGCD01027478 MODEL 8765662 protein-coding Xpo6 exportin 6 ENCODES a protein that exhibits nuclear export signal receptor activity (ortholog); INVOLVED IN protein export from nucleus (ortholog); ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955493 6172860 6265269 - 102009620 AGCD01061085;GBBH01033663;XM_005405146;XM_005405147;XM_005405149;XM_013504862;XM_013504863 XP_005405203;XP_005405204;XP_005405206;XP_013360316;XP_013360317 MODEL 8854423 protein-coding Poldip2 DNA polymerase delta interacting protein 2 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN error-free translesion synthesis (ortholog); mitochondrion organization (ortholog); mitotic spindle assembly (ortholog); ASSOCIATED WITH Neointima (ortholog); streptococcal meningitis (ortholog); FOUND IN cell-cell junction (ortholog); midbody (ortholog); mitochondrial matrix (ortholog) NW_004955481 4776721 4785817 + 102006912 AGCD01056952;GBDF01009609;GBDI01062561;XM_005402761 XP_005402818 MODEL 8765133 protein-coding Shroom4 shroom family member 4 ENCODES a protein that exhibits actin filament binding (ortholog); myosin II binding (ortholog); INVOLVED IN actin filament organization (ortholog); brain development (ortholog); cell morphogenesis (ortholog); ASSOCIATED WITH intellectual disability (ortholog); Stocco Dos Santos type X-linked intellectual disability (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog); apical plasma membrane (ortholog) NW_004955543 1810125 2046144 - 102017704 AGCD01071632;AGCD01071633;AGCD01071634;AGCD01071635;AGCD01071636;AGCD01071637;AGCD01071638;AGCD01071639;AGCD01071640;GBDJ01421933;XM_013508168 XP_013363622 MODEL 9049585 protein-coding Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 ENCODES a protein that exhibits AP-3 adaptor complex binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); melanosome organization (ortholog); ASSOCIATED WITH Hermansky-Pudlak syndrome (ortholog); FOUND IN BLOC-1 complex (ortholog); cytoplasm (ortholog) NW_004955514 3698644 3699227 - 102008971 AGCD01067105;GBCE01116712;GBDF01001526;XM_013506813 XP_013362267 MODEL 9043529 protein-coding Trpm7 transient receptor potential cation channel subfamily M member 7 ENCODES a protein that exhibits actin binding (ortholog); calcium channel activity (ortholog); kinase activity (ortholog); INVOLVED IN actomyosin structure organization (ortholog); calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); ASSOCIATED WITH adenoma (ortholog); amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis-parkinsonism/dementia complex 1 (ortholog); FOUND IN cytoplasmic vesicle (ortholog); neuronal cell body (ortholog); nucleus (ortholog) NW_004955409 3690722 3787139 + 102028060 AGCD01009259;AGCD01009260;GBDF01237858;XM_005376661;XM_005376664;XM_005376665 XP_005376718;XP_005376721;XP_005376722 MODEL 8739858 protein-coding LOC102003491 U3 small nucleolar RNA-associated protein 14 homolog A-like NW_004955546 975313 987398 + 102003491 AGCD01072034;GBBH01046731;XM_005411756 XP_005411813 MODEL 8799202 ncrna LOC102015428 uncharacterized LOC102015428 NW_004955429 21524845 21543864 - 102015428 AGCD01029005;GBDF01194430;XR_261375;XR_261376 MODEL 10148088 ncrna LOC106148086 uncharacterized LOC106148086 NW_004955415 4110682 4119805 - 106148086 AGCD01015965;AGCD01015966;GBBH01052326;XR_001233218 MODEL 8849394 pseudo LOC102024163 60S ribosomal protein L30-like NW_004955534 1136896 1137291 + 102024163 AGCD01070487 MODEL 10276236 protein-coding LOC106146439 uncharacterized LOC106146439 NW_004955479 10297316 10326089 + 106146439 AGCD01056534;AGCD01056535;GBDF01134257;XM_013503260 XP_013358714 MODEL 9054982 pseudo LOC102009285 WW domain-containing adapter protein with coiled-coil pseudogene NW_004955487 7895732 7897622 - 102009285 AGCD01059414 MODEL 8831801 ncrna LOC102026663 uncharacterized LOC102026663 NW_004955431 17018285 17057019 - 102026663 AGCD01030399;GBDF01010182;XR_261485;XR_261486;XR_261487 MODEL 8955375 protein-coding Pip4k2b phosphatidylinositol-5-phosphate 4-kinase type 2 beta ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); 1-phosphatidylinositol-5-phosphate 4-kinase activity (ortholog); ATP binding (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process (ortholog); autophagosome-lysosome fusion (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); ASSOCIATED WITH hereditary neutrophilia (ortholog); FOUND IN autophagosome (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955451 13842814 13856301 - 102020190 AGCD01043508;GBCE01135031;GBDK01143126;XM_013519273 XP_013374727 MODEL 39132692 snorna SNORD28 Small nucleolar RNA SNORD28 8787848 ncrna LOC102012458 uncharacterized LOC102012458 NW_004955429 17740928 17746251 - 102012458 AGCD01028865;GBDF01045489;XR_001234510 MODEL 8990611 protein-coding Trpm8 transient receptor potential cation channel subfamily M member 8 ENCODES a protein that exhibits calcium channel activity (ortholog); identical protein binding (ortholog); monoatomic ion channel activity (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); calcium ion transport (ortholog); intracellular calcium ion homeostasis (ortholog); ASSOCIATED WITH asthma (ortholog); migraine (ortholog); migraine without aura (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); external side of plasma membrane (ortholog); membrane (ortholog) NW_004955453 2185534 2265261 - 102004035 AGCD01044623;AGCD01044624;GBDF01103492;XM_005395332 XP_005395389 MODEL 8868119 ncrna LOC102020637 uncharacterized LOC102020637 NW_004955407 37887840 37893702 - 102020637 AGCD01007788;GBDF01123976;XR_001231276;XR_259619 MODEL 8758286 protein-coding Ern2 endoplasmic reticulum to nucleus signaling 2 ENCODES a protein that exhibits ATP binding (ortholog); endonuclease activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN apoptotic chromosome condensation (ortholog); intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum quality control compartment (ortholog) NW_004955493 2217187 2233920 - 102014683 AGCD01060935;GBBH01165480;GBBH01165568;XM_013504864 XP_013360318 MODEL 150537105 scarna SCARNA1 small Cajal body-specific RNA 1 8935413 protein-coding Ndufaf4 NADH:ubiquinone oxidoreductase complex assembly factor 4 INVOLVED IN defense response to virus (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); NADH dehydrogenase complex assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); mitochondrial complex I deficiency (ortholog); nuclear type mitochondrial complex I deficiency 1 (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955411 22878031 22882723 - 102019785 AGCD01012099;GBDI01324089;XM_005377790 XP_005377847 MODEL 9061920 protein-coding Srebf2 sterol regulatory element binding transcription factor 2 ENCODES a protein that exhibits C-8 sterol isomerase activity (ortholog); chromatin binding (ortholog); DNA binding (ortholog); INVOLVED IN cellular response to low-density lipoprotein particle stimulus (ortholog); cellular response to starvation (ortholog); cholesterol homeostasis (ortholog); PARTICIPATES IN altered p53 signaling pathway; sterol regulatory element-binding protein signaling pathway; ASSOCIATED WITH alcohol use disorder (ortholog); atherosclerosis (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); endoplasmic reticulum (ortholog) NW_004955413 27271717 27326655 + 102026308 AGCD01014500;AGCD01014501;GBDF01048386;XM_005379374 XP_005379431 MODEL 8747165 protein-coding Tmx4 thioredoxin related transmembrane protein 4 ASSOCIATED WITH congenital myasthenic syndrome 18 (ortholog); developmental and epileptic encephalopathy 12 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); nuclear inner membrane (ortholog) NW_004955415 18055257 18100705 - 102020441 AGCD01016439;GBCE01114792;XM_005380861 XP_005380918 MODEL 8738867 pseudo LOC102005947 protein FAM72A-like NW_004955497 509767 511648 - 102005947 AGCD01062421 MODEL 8764256 pseudo LOC102008936 glycoprotein endo-alpha-1,2-mannosidase pseudogene NW_004955414 9246135 9247353 + 102008936 AGCD01015014 MODEL 8717156 protein-coding LOC102007397 uncharacterized LOC102007397 NW_004955403 53982569 53983635 + 102007397 AGCD01003083;GBDK01203485;XM_005373841 XP_005373898 MODEL 9016356 protein-coding LOC102025265 melanoma-associated antigen 10-like NW_004955498 4274086 4299079 - 102025265 AGCD01062986;AGCD01062987;AGCD01062988;AGCD01062989;AGCD01062990;AGCD01062991;AGCD01062992;GBDF01077002;XM_013505527 XP_013360981 MODEL 8908136 ncrna LOC102003492 uncharacterized LOC102003492 NW_004955442 7304160 7304657 + 102003492 AGCD01037623;GBDF01000001;XR_262125 MODEL 8988073 pseudo LOC102029407 ribosomal protein S6 kinase delta-1-like NW_004955421 7810459 7835657 + 102029407 AGCD01021781;AGCD01021782 MODEL 8746642 protein-coding LOC102025598 olfactory receptor 8S1-like NW_004955500 7344251 7345273 - 102025598 AGCD01063916;XM_005406712 XP_005406769 MODEL 10272555 ncrna LOC106146709 uncharacterized LOC106146709 NW_004955493 7151097 7151933 + 106146709 AGCD01061156;GBDF01052723;XR_001231267 MODEL 8807017 protein-coding Slc30a4 solute carrier family 30 member 4 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN lactation (ortholog); otolith development (ortholog); response to toxic substance (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); COVID-19 (ortholog); prostate carcinoma in situ (ortholog); FOUND IN cytoplasm (ortholog); endosome membrane (ortholog); late endosome (ortholog) NW_004955409 7963454 7991600 + 102024771 AGCD01009371;GBCE01097726;GBDF01000969;XM_005377147 XP_005377204 MODEL 8707739 pseudo LOC102006300 60S ribosomal protein L30-like NW_004955402 43644927 43645275 + 102006300 AGCD01001075 MODEL 8778075 ncrna LOC102027686 uncharacterized LOC102027686 NW_004955444 8286148 8297630 - 102027686 AGCD01038932;GBDK01114535;XR_262251 MODEL 8907821 protein-coding LOC102019656 SLAM family member 9-like NW_004955623 7603 114709 - 102019656 AGCD01077398;AGCD01077399;AGCD01077400;AGCD01077401;AGCD01077402;AGCD01077403;AGCD01077404;AGCD01077405;AGCD01077406;AGCD01077407;AGCD01077408;AGCD01077409;AGCD01077410;AGCD01077411;GBDJ01143899;GBDK01263692;XM_013510158 XP_013365612 MODEL 8808513 protein-coding Padi6 peptidyl arginine deiminase 6 ENCODES a protein that exhibits identical protein binding (ortholog); protein-arginine deiminase activity (ortholog); structural constituent of cytoplasmic lattice (ortholog); INVOLVED IN cytoplasm organization (ortholog); cytoskeleton organization (ortholog); embryonic cleavage (ortholog); ASSOCIATED WITH genetic disease (ortholog); Oocyte/Zygote/Embryo Maturation Arrest 16 (ortholog); primary ovarian insufficiency (ortholog); FOUND IN cortical granule (ortholog); cytoplasm (ortholog); cytoplasmic lattice (ortholog) NW_004955527 1515796 1531420 - 102022421 AGCD01069407;GBDF01211174;XM_013507407 XP_013362861 MODEL 39133603 snorna SNORD29 Small nucleolar RNA SNORD29 9038540 protein-coding Phax phosphorylated adaptor for RNA export ENCODES a protein that exhibits mRNA cap binding complex binding (ortholog); toxic substance binding (ortholog); INVOLVED IN RNA stabilization (ortholog); snRNA export from nucleus (ortholog); ASSOCIATED WITH Hirschsprung's disease (ortholog); FOUND IN cytoplasm (ortholog); neuronal cell body (ortholog); nucleoplasm (ortholog) NW_004955521 4425382 4442668 + 102019098 AGCD01068262;GBDF01195825;XM_005409329 XP_005409386 MODEL 8743746 ncrna LOC102018490 uncharacterized LOC102018490 NW_004955415 16685821 16705592 + 102018490 AGCD01016391;AGCD01016392;AGCD01016393;GBDF01076606;XR_260300 MODEL 8838810 ncrna LOC102003191 uncharacterized LOC102003191 NW_004955402 40910787 40919051 - 102003191 AGCD01001005;GBDF01110513;XR_259082 MODEL 8847062 protein-coding Tex22 testis expressed 22 FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog) NW_004955538 3618777 3627906 + 102006073 AGCD01071172;GBDF01003251;XM_005410862;XM_005410863;XM_005410864 XP_005410919;XP_005410920;XP_005410921 MODEL 8970209 pseudo LOC102010080 protein MEMO1-like NW_004955429 4415409 4416220 + 102010080 AGCD01028489 MODEL 8769677 protein-coding Ift46 intraflagellar transport 46 INVOLVED IN cilium assembly (ortholog); smoothened signaling pathway (ortholog); FOUND IN centrosome (ortholog); cilium (ortholog); cytoplasm (ortholog) NW_004955412 19697995 19710965 - 102012175 AGCD01012969;AGCD01012970;AGCD01012971;GBDF01049816;XM_005378250 XP_005378307 MODEL 8963158 pseudo LOC102004548 60S ribosomal protein L32 pseudogene NW_004957060 748 1529 + 102004548 AGCD01080456 MODEL 8731969 pseudo LOC102028332 transmembrane protein 185B-like NW_004955529 1878696 1884872 - 102028332 AGCD01069715 MODEL 8761883 protein-coding LOC102023860 zinc finger protein 264-like NW_004955584 166775 178268 - 102023860 AGCD01075920;AGCD01075921;AGCD01075922;AGCD01075923;GBBH01221998;GBCE01134653;XM_013509843 XP_013365297 MODEL 10284096 ncrna LOC106149278 uncharacterized LOC106149278 NW_004955442 7249678 7256896 - 106149278 AGCD01037623;GBDI01038145;XR_001235353 MODEL 9006740 protein-coding Xpo7 exportin 7 ENCODES a protein that exhibits nuclear export signal receptor activity (ortholog); INVOLVED IN protein export from nucleus (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN cytoplasm (ortholog); nuclear pore (ortholog); nucleus (ortholog) NW_004955403 45470932 45508691 + 102029143 AGCD01002816;GBBH01206500;XM_005373641;XM_005373642 XP_005373698;XP_005373699 MODEL 10098277 protein-coding LOC106146316 NACHT, LRR and PYD domains-containing protein 1-like NW_004955467 11157328 11162706 - 106146316 AGCD01051604;XM_013522041 XP_013377495 MODEL 10388107 ncrna LOC106150102 uncharacterized LOC106150102 NW_004955464 11450268 11456604 - 106150102 AGCD01050154;GBDF01236342;XR_001236716 MODEL 8827830 protein-coding Ndufaf5 NADH:ubiquinone oxidoreductase complex assembly factor 5 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); Leber plus disease (ortholog); Leigh disease (ortholog); FOUND IN matrix side of mitochondrial inner membrane (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955415 23221084 23263548 + 102003535 AGCD01016552;GBDF01053633;XM_005380887;XM_013512337;XM_013512338;XR_001233234 XP_005380944;XP_013367791;XP_013367792 MODEL 8713342 ncrna LOC102012041 uncharacterized LOC102012041 NW_004955402 6962055 6984367 - 102012041 AGCD01000163;GBDF01177670;XR_001235410;XR_001235416;XR_001235420;XR_001235423;XR_259036 MODEL 8720912 protein-coding Tnc tenascin C ENCODES a protein that exhibits identical protein binding (ortholog); integrin binding (ortholog); syndecan binding (ortholog); INVOLVED IN bud outgrowth involved in lung branching (ortholog); cellular response to prostaglandin D stimulus (ortholog); cellular response to retinoic acid (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH allergic asthma (ortholog); allergic conjunctivitis (ortholog); Allergic Rhinoconjunctivitis (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular matrix of synaptic cleft (ortholog) NW_004955419 12569620 12662897 + 102005935 AGCD01019976;AGCD01019977;AGCD01019978;GBCE01000789;GBCQ01126227;XM_013513252;XM_013513253 XP_013368706;XP_013368707 MODEL 8951860 protein-coding LOC102025273 olfactory receptor 4C16-like NW_004955511 350502 351545 + 102025273 AGCD01066328;XM_005407942 XP_005407999 MODEL 10136529 ncrna LOC106146993 uncharacterized LOC106146993 NW_004955407 41858854 41863093 - 106146993 AGCD01007883;XR_001231681 MODEL 8984221 protein-coding LOC102026665 cytochrome c oxidase subunit NDUFA4-like NW_004955433 11165475 11165826 + 102026665 AGCD01031649;XM_005388296 XP_005388353 MODEL 8903871 ncrna LOC102006301 uncharacterized LOC102006301 NW_004955450 13203566 13210711 - 102006301 AGCD01042729;GBDF01222682;XR_001235845;XR_001235847;XR_001235848 MODEL 9050823 pseudo LOC102030114 zinc finger CCHC-type and RNA-binding motif-containing protein 1 pseudogene NW_004955519 1827517 1828195 + 102030114 AGCD01067909 MODEL 8830066 pseudo LOC102021450 40S ribosomal protein S24 pseudogene NW_004955420 610075 610467 - 102021450 AGCD01020550 MODEL 8970244 protein-coding LOC102012465 transmembrane emp24 domain-containing protein 11 NW_004955514 560181 584300 - 102012465 AGCD01067014;GBDJ01333431;XM_005408689 XP_005408746 MODEL 8928005 protein-coding Knop1 lysine rich nucleolar protein 1 FOUND IN nucleolus (ortholog) NW_004955442 3416904 3428274 - 102011700 AGCD01037506;GBDI01219490;XM_005391118;XM_005391119;XM_005391120 XP_005391175;XP_005391176;XP_005391177 MODEL 8770067 protein-coding Shtn1 shootin 1 ENCODES a protein that exhibits actin filament binding (ortholog); cell adhesion molecule binding (ortholog); identical protein binding (ortholog); INVOLVED IN actin filament bundle retrograde transport (ortholog); axonogenesis (ortholog); Cdc42 protein signal transduction (ortholog); FOUND IN axon (ortholog); axonal growth cone (ortholog); cell leading edge (ortholog) NW_004955431 21653415 21734160 - 102027776 AGCD01030496;GBCQ01149394;XM_005387870;XM_013515871 XP_005387927;XP_013371325 MODEL 39131727 snorna SNORD30 Small nucleolar RNA SNORD30 10269988 ncrna LOC106146566 uncharacterized LOC106146566 NW_004955484 7172186 7176136 - 106146566 AGCD01058310;AGCD01058311;GBDF01149017;XR_001231062 MODEL 8711893 protein-coding Spats2l spermatogenesis associated serine rich 2 like ASSOCIATED WITH atrial fibrillation (ortholog); COVID-19 (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); protein-containing complex (ortholog) NW_004955403 930622 1085906 - 102007171 AGCD01001712;AGCD01001713;AGCD01001714;AGCD01001715;GBCC01017701;XM_005373252;XM_005373253 XP_005373309;XP_005373310 MODEL 8924749 protein-coding LOC102024164 elongation factor 1-alpha 1-like NW_004955437 17981299 17983136 + 102024164 AGCD01034770;AGCD01034771;XM_013516741 XP_013372195 MODEL 10216546 protein-coding LOC106146440 uncharacterized LOC106146440 NW_004955479 8426399 8427379 + 106146440 AGCD01056438;GBCB01131492;GBDF01304897;XM_013503261 XP_013358715 MODEL 8728227 protein-coding LOC102008939 probable E3 ubiquitin-protein ligase HERC6 NW_004955474 12079119 12140769 - 102008939 AGCD01054648;AGCD01054649;AGCD01054650;GBDK01319254;XM_013502713 XP_013358167 MODEL 8727125 ncrna LOC102027013 uncharacterized LOC102027013 NW_004955438 14888310 14894069 - 102027013 AGCD01035354;XR_001235151;XR_261934;XR_261935 MODEL 8858821 ncrna LOC102018111 uncharacterized LOC102018111 NW_004955499 5787418 5804841 - 102018111 AGCD01063529;GBDJ01146430;XR_264221 MODEL 8959292 pseudo LOC102009287 E3 SUMO-protein ligase PIAS2-like NW_004955421 24211084 24213430 - 102009287 AGCD01022209 MODEL 8772519 protein-coding LOC102029408 olfactory receptor 9A2 NW_004955494 618271 619213 + 102029408 AGCD01061382;XM_013504929 XP_013360383 MODEL 9055416 ncrna LOC102025599 uncharacterized LOC102025599 NW_004955426 18719733 18726205 + 102025599 AGCD01026529;GBDF01123686;XR_261205 MODEL 9038899 protein-coding Pip4k2c phosphatidylinositol-5-phosphate 4-kinase type 2 gamma ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); 1-phosphatidylinositol-5-phosphate 4-kinase activity (ortholog); identical protein binding (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process (ortholog); negative regulation of insulin receptor signaling pathway (ortholog); positive regulation of autophagosome assembly (ortholog); FOUND IN autophagosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955458 5315083 5327617 + 102007087 AGCD01047474;AGCD01047475;AGCD01047476;GBDI01062171;GBDK01128471;XM_005397400 XP_005397457 MODEL 8854225 protein-coding LOC102003495 protein PBDC1-like NW_004955562 2207581 2209840 + 102003495 AGCD01074028;GBCE01099202;GBDI01000979;XM_005413095 XP_005413152 MODEL 9017286 pseudo LOC102020640 F-actin-capping protein subunit alpha-2 pseudogene NW_004955464 8171466 8172795 + 102020640 AGCD01050084 MODEL 8975398 protein-coding Slc30a5 solute carrier family 30 member 5 ENCODES a protein that exhibits cadmium ion transmembrane transporter activity (ortholog); zinc efflux transmembrane transporter activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN cobalt ion transport (ortholog); GPI anchor biosynthetic process (ortholog); intracellular zinc ion homeostasis (ortholog); ASSOCIATED WITH Bradycardia (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955446 158843 196275 - 102009893 AGCD01039930;AGCD01039931;GBBH01087914;XM_005392594;XM_013518421 XP_005392651;XP_013373875 MODEL 8872126 protein-coding Poldip3 DNA polymerase delta interacting protein 3 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN poly(A)+ mRNA export from nucleus (ortholog); positive regulation of translation (ortholog); PARTICIPATES IN mTOR signaling pathway; FOUND IN cytoplasmic ribonucleoprotein granule (ortholog); nuclear speck (ortholog) NW_004955413 27944109 27968156 - 102011755 AGCD01014538;AGCD01014539;GBBH01060544;XM_005379420 XP_005379477 MODEL 9068134 protein-coding LOC102015432 olfactory receptor 8K3-like NW_004955511 1171624 1172571 + 102015432 AGCD01066359;XM_005408225 XP_005408282 MODEL 10074617 ncrna LOC106146994 uncharacterized LOC106146994 NW_004955511 2261770 2269522 - 106146994 AGCD01066396;GBCE01183479;XR_001231686;XR_001231687 MODEL 8993830 protein-coding Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 ENCODES a protein that exhibits AP-3 adaptor complex binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); anterograde synaptic vesicle transport (ortholog); developmental pigmentation (ortholog); ASSOCIATED WITH Hermansky-Pudlak syndrome (ortholog); Hermansky-Pudlak syndrome 11 (ortholog); platelet storage pool deficiency (ortholog); FOUND IN BLOC-1 complex (ortholog); microvesicle (ortholog); transport vesicle (ortholog) NW_004955465 5910095 5943996 + 102025889 AGCD01050435;AGCD01050436;GBCQ01069346;XM_005398846;XM_005398848 XP_005398903;XP_005398905 MODEL 8771338 pseudo LOC102005948 coiled-coil domain-containing protein 152-like NW_004955424 19596277 19597238 - 102005948 AGCD01024830 MODEL 8977943 protein-coding Paf1 PAF1 component of Paf1/RNA polymerase II complex ENCODES a protein that exhibits chromatin binding (ortholog); RNA polymerase II complex binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); endodermal cell fate commitment (ortholog); gene expression (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; FOUND IN Cdc73/Paf1 complex (ortholog); cytoplasm (ortholog); fibrillar center (ortholog) NW_004955468 166477 172200 + 102023017 AGCD01051684;GBDF01010852;XM_005399775 XP_005399832 MODEL 8865165 ncrna LOC102018491 uncharacterized LOC102018491 NW_004955416 21069345 21083402 + 102018491 AGCD01017496;GBCB01076411;XR_001233319;XR_001233320;XR_260403;XR_260405;XR_260406 MODEL 8766970 protein-coding Srek1 splicing regulatory glutamic acid and lysine rich protein 1 FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955446 2908587 2946966 - 102014094 AGCD01039993;GBBH01089792;XM_005392605;XM_005392608;XM_005392611;XM_013518443 XP_005392662;XP_005392665;XP_005392668;XP_013373897 MODEL 8938719 ncrna LOC102007399 uncharacterized LOC102007399 NW_004955405 764142 804289 + 102007399 AGCD01004584;AGCD01004585;GBDF01014030;XR_259356;XR_259357 MODEL 39133433 snrna U4 U4 spliceosomal RNA 10088047 pseudo LOC106146317 probable ATP-dependent RNA helicase DDX41 pseudogene NW_004955500 6555960 6559889 + 106146317 AGCD01063885 MODEL 10108882 ncrna LOC106146710 uncharacterized LOC106146710 NW_004955493 7240285 7244593 + 106146710 AGCD01061169;AGCD01061170;GBCQ01068881;XR_001231268;XR_001231269 MODEL 8897600 pseudo LOC102027687 60S ribosomal protein L31-like NW_004955445 1148929 1149447 + 102027687 AGCD01039330 MODEL 39133358 snorna SCARNA10 small Cajal body-specific RNA 10 10070045 protein-coding LOC106148087 protocadherin beta-9-like NW_004955415 12609727 12610160 - 106148087 AGCD01016206;GBDF01153216;GBDK01244028;XM_013512256 XP_013367710 MODEL 9017909 pseudo LOC102003193 proliferation-associated protein 2G4 pseudogene NW_004955450 4817696 4818898 + 102003193 AGCD01042479;AGCD01042480 MODEL 8785102 pseudo LOC102012468 ribose-phosphate pyrophosphokinase 1-like NW_004955519 2455691 2458425 + 102012468 AGCD01067931;AGCD01067932 MODEL 9028787 protein-coding LOC102010081 vomeronasal secretory protein 2-like NW_004955513 2601129 2609926 + 102010081 AGCD01066882;AGCD01066883;GBDF01023674;XM_005408421;XM_005408422;XM_013506591 XP_005408478;XP_005408479;XP_013362045 MODEL 9050718 ncrna LOC102023863 uncharacterized LOC102023863 NW_004955403 52246156 52249056 - 102023863 AGCD01003003;GBDF01111470;XR_259261 MODEL 8781628 protein-coding Knstrn kinetochore localized astrin (SPAG5) binding protein ENCODES a protein that exhibits microtubule plus-end binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cell migration (ortholog); cellular response to epidermal growth factor stimulus (ortholog); chromosome segregation (ortholog); ASSOCIATED WITH actinic keratosis (ortholog); COVID-19 (ortholog); Roifman-Chitayat Syndrome (ortholog); FOUND IN centriolar satellite (ortholog); kinetochore (ortholog); microtubule organizing center (ortholog) NW_004955416 7311483 7322272 + 102020443 AGCD01016973;GBDF01008449;XM_013512611;XM_013512612 XP_013368065;XP_013368066 MODEL 9026283 protein-coding Ift52 intraflagellar transport 52 INVOLVED IN cilium assembly (ortholog); determination of left/right symmetry (ortholog); dorsal/ventral pattern formation (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); gastrointestinal stromal tumor (ortholog); Short-Rib Thoracic Dysplasia 16 with or without Polydactyly (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955445 13542726 13580204 - 102025631 AGCD01039791;AGCD01039792;AGCD01039793;AGCD01039794;GBCE01054533;XM_005392497 XP_005392554 MODEL 8704490 protein-coding Lcat lecithin-cholesterol acyltransferase ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); A2-type glycerophospholipase activity (ortholog); apolipoprotein A-I binding (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); cholesterol metabolic process (ortholog); cholesterol transport (ortholog); PARTICIPATES IN reverse cholesterol transport pathway; ASSOCIATED WITH arteriosclerosis (ortholog); Chemical and Drug Induced Liver Injury (ortholog); end stage renal disease (ortholog); FOUND IN extracellular region (ortholog); high-density lipoprotein particle (ortholog) NW_004955484 8772692 8776122 + 102017239 AGCD01058396;GBDF01235122;XM_005403602;XM_013503882 XP_005403659;XP_013359336 MODEL 10064462 ncrna LOC106150103 uncharacterized LOC106150103 NW_004955465 569721 597369 - 106150103 AGCD01050309;GBDK01419155;XR_001236717;XR_001236718 MODEL 8778798 pseudo LOC102027014 60S ribosomal protein L26-like NW_004955439 1201211 1201645 + 102027014 AGCD01035603 MODEL 9050627 pseudo LOC102018502 mitochondrial folate transporter/carrier pseudogene NW_004955487 5235509 5238027 - 102018502 AGCD01059323 MODEL 8887285 protein-coding Xpot exportin for tRNA ENCODES a protein that exhibits tRNA binding (ortholog); INVOLVED IN tRNA export from nucleus (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear pore (ortholog) NW_004955458 11162612 11206515 + 102020214 AGCD01047726;AGCD01047727;AGCD01047728;AGCD01047729;AGCD01047730;GBCQ01038249;XM_005397439;XM_013520915;XM_013520916;XM_013520917;XM_013520918 XP_005397496;XP_013376369;XP_013376370;XP_013376371;XP_013376372 MODEL 9012745 ncrna LOC102019662 uncharacterized LOC102019662 NW_004955453 15591053 15595926 + 102019662 AGCD01044894;GBCB01113901;XR_262745 MODEL 9025217 protein-coding Ero1a endoplasmic reticulum oxidoreductase 1 alpha ENCODES a protein that exhibits flavin-dependent sulfhydryl oxidase activity (ortholog); oxidoreductase activity (ortholog); protein-disulfide reductase activity (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); cell redox homeostasis (ortholog); cellular response to hypoxia (ortholog); ASSOCIATED WITH Brain Hypoxia-Ischemia (ortholog); FOUND IN dendrite (ortholog); endoplasmic reticulum (ortholog); extracellular region (ortholog) NW_004955409 10495892 10533383 + 102009917 AGCD01009474;AGCD01009475;GBCE01145796;XM_005376780 XP_005376837 MODEL 8880129 ncrna LOC102029409 uncharacterized LOC102029409 NW_004955494 3921223 3924222 + 102029409 AGCD01061490;GBDF01110499;XR_264111 MODEL 8801185 ncrna LOC102009289 uncharacterized LOC102009289 NW_004955422 20690361 20700604 - 102009289 AGCD01023085;AGCD01023086;GBCB01050340;XR_260904 MODEL 8963119 ncrna LOC102003499 uncharacterized LOC102003499 NW_004955446 7604429 7625603 + 102003499 AGCD01040126;GBDF01002983;XR_262378;XR_262379 MODEL 8861930 protein-coding Phb1 prohibitin 1 ENCODES a protein that exhibits complement component C3a binding (ortholog); complement component C3b binding (ortholog); enzyme binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); antiviral innate immune response (ortholog); B cell activation (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); Brain Injuries (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); early endosome (ortholog) NW_004955451 12110290 12119870 + 102025749 AGCD01043375;GBCB01000499;XM_005394212;XM_005394213 XP_005394269;XP_005394270 MODEL 8926583 protein-coding LOC102006303 basic salivary proline-rich protein 4-like NW_004955451 12633382 12651062 - 102006303 AGCD01043417;GBCQ01011558;XM_005394240;XR_001235989 XP_005394297 MODEL 8936649 protein-coding Pip4p1 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 1 ENCODES a protein that exhibits phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity (ortholog); INVOLVED IN cholesterol metabolic process (ortholog); lysosome localization (ortholog); phosphatidylinositol dephosphorylation (ortholog); FOUND IN late endosome membrane (ortholog); lysosomal membrane (ortholog); phagocytic vesicle membrane (ortholog) NW_004955550 1275921 1279262 - 102025625 AGCD01072559;GBCE01055444;XM_005412063 XP_005412120 MODEL 8793461 ncrna LOC102021452 uncharacterized LOC102021452 NW_004955420 19744171 19769843 + 102021452 AGCD01021066;GBDF01162139;XR_001233826;XR_260726 MODEL 8918482 protein-coding Tex26 testis expressed 26 NW_004955431 14880152 14910325 - 102018520 AGCD01030343;GBBH01036988;XM_005387737;XM_005387739;XM_013515719 XP_005387794;XP_005387796;XP_013371173 MODEL 8933937 pseudo LOC102004550 ubiquitin-like protein FUBI pseudogene NW_004955403 20036621 20037044 + 102004550 AGCD01002152 MODEL 10097621 ncrna LOC106149279 uncharacterized LOC106149279 NW_004955442 1700053 1725937 + 106149279 AGCD01037451;XR_001235354 MODEL 8954199 protein-coding LOC102030116 chromosome unknown open reading frame, human C16orf46 NW_004955522 3845029 3853167 - 102030116 AGCD01068400;GBCE01176740;XM_005409352;XM_005409353;XM_005409355;XM_005409356;XM_013507107;XM_013507108 XP_005409409;XP_005409410;XP_005409412;XP_005409413;XP_013362561;XP_013362562 MODEL 39131977 snorna SNORD31B Small nucleolar RNA SNORD31 9021687 pseudo LOC102028333 rho GTPase-activating protein 17-like NW_004955436 8391589 8395330 - 102028333 AGCD01033740 MODEL 10332770 ncrna LOC106146567 uncharacterized LOC106146567 NW_004955484 9851685 9853110 - 106146567 AGCD01058434;GBDJ01127458;XR_001231064 MODEL 8874933 protein-coding Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 ENCODES a protein that exhibits actin filament binding (ortholog); AP-3 adaptor complex binding (ortholog); identical protein binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); actin filament network formation (ortholog); adenosine metabolic process (ortholog); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); genetic disease (ortholog); Hermansky-Pudlak syndrome (ortholog); FOUND IN actin filament (ortholog); axon terminus (ortholog); BLOC-1 complex (ortholog) NW_004955409 7902125 7913966 - 102019250 AGCD01009369;GBBH01116617;XM_005376726;XM_005376727 XP_005376783;XP_005376784 MODEL 8884318 ncrna LOC102024169 uncharacterized LOC102024169 NW_004955443 19903033 19910517 + 102024169 AGCD01038639;GBBH01044033;XR_001235444;XR_001235445;XR_001235446 MODEL 8717799 protein-coding Spc24 SPC24 component of NDC80 kinetochore complex INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); FOUND IN kinetochore (ortholog); Ndc80 complex (ortholog); nucleolus (ortholog) NW_004955774 5456 9810 - 102008681 AGCD01078321;GBDF01226288;XM_005415107 XP_005415164 MODEL 9028598 protein-coding Ndufaf6 NADH:ubiquinone oxidoreductase complex assembly factor 6 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH Fanconi renotubular syndrome 5 (ortholog); genetic disease (ortholog); Leigh disease (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955417 11159449 11180323 + 102003130 AGCD01018123;AGCD01018124;GBCC01035127;GBDF01252020;XM_013512780 XP_013368234 MODEL 10332764 ncrna LOC106146441 uncharacterized LOC106146441 NW_004955479 3277391 3282861 + 106146441 AGCD01056294;GBCC01012680;XR_001230874 MODEL 8886319 protein-coding Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 ENCODES a protein that exhibits dynein complex binding (ortholog); dynein intermediate chain binding (ortholog); identical protein binding (ortholog); INVOLVED IN acrosome assembly (ortholog); actin cytoskeleton organization (ortholog); adult locomotory behavior (ortholog); PARTICIPATES IN altered Reelin signaling pathway; Reelin signaling pathway; ASSOCIATED WITH Abnormal Cortical Gyration (ortholog); Carcinogenesis (ortholog); Classical Lissencephalies and Subcortical Band Heterotopias (ortholog); FOUND IN 1-alkyl-2-acetylglycerophosphocholine esterase complex (ortholog); astral microtubule (ortholog); axon (ortholog) NW_004955481 608897 686454 - 102006576 AGCD01056798;AGCD01056799;GBDF01010392;XM_005402577;XM_013503487;XM_013503488;XM_013503489;XM_013503490;XM_013503491;XM_013503492 XP_005402634;XP_013358941;XP_013358942;XP_013358943;XP_013358944;XP_013358945;XP_013358946 MODEL 9017356 protein-coding Trps1 transcriptional repressor GATA binding 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); protein domain specific binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cell surface receptor protein serine/threonine kinase signaling pathway (ortholog); chondrocyte differentiation (ortholog); hair follicle development (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); bone development disease (ortholog); brachydactyly (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955417 21674545 21913137 - 102028191 AGCD01018402;AGCD01018403;AGCD01018404;AGCD01018405;AGCD01018406;GBCQ01151050;XM_005381890;XM_005381891;XM_005381893;XM_013512789;XM_013512790;XM_013512791;XM_013512792;XM_013512793 XP_005381947;XP_005381948;XP_005381950;XP_013368243;XP_013368244;XP_013368245;XP_013368246;XP_013368247 MODEL 39133434 snrna U4 U4 spliceosomal RNA 8774181 pseudo LOC102026671 proteasome assembly chaperone 2 pseudogene NW_004955436 3813896 3815693 + 102026671 AGCD01033642;AGCD01033643;XM_005389294 MODEL 8874078 protein-coding LOC102025606 olfactory receptor 4S2 NW_004955511 402788 403744 + 102025606 AGCD01066331;XM_005407943 XP_005408000 MODEL 10245472 ncrna LOC106146318 uncharacterized LOC106146318 NW_004955403 52558223 52602104 - 106146318 AGCD01003008;AGCD01003009;AGCD01003010;GBDF01263619;XR_001234107 MODEL 8930213 protein-coding LOC102020652 olfactory receptor 51G2 NW_004955414 20518042 20518983 - 102020652 AGCD01015378;XM_005380060 XP_005380117 MODEL 8717592 protein-coding Slc30a6 solute carrier family 30 member 6 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); zinc:proton antiporter activity (ortholog); INVOLVED IN Golgi to endosome transport (ortholog); regulation of zinc ion transport (ortholog); zinc ion import into Golgi lumen (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); Golgi apparatus (ortholog) NW_004955441 528256 567382 + 102021600 AGCD01036710;AGCD01036711;AGCD01036712;GBDF01128354;XM_005390837;XM_013517595 XP_005390894;XP_013373049 MODEL 10083134 protein-coding LOC106146995 translation initiation factor IF-2-like NW_004955511 5764592 5767757 - 106146995 AGCD01066580;GBDF01265474;XM_013506403 XP_013361857 MODEL 10089857 ncrna LOC106148088 uncharacterized LOC106148088 NW_004955415 20345103 20349305 - 106148088 AGCD01016488;XR_001233221 MODEL 8968408 protein-coding Ero1b endoplasmic reticulum oxidoreductase 1 beta ENCODES a protein that exhibits disulfide oxidoreductase activity (ortholog); flavin-dependent sulfhydryl oxidase activity (ortholog); protein-disulfide reductase activity (ortholog); INVOLVED IN cell redox homeostasis (ortholog); extracellular matrix organization (ortholog); glucose homeostasis (ortholog); ASSOCIATED WITH cataract (ortholog); FOUND IN endoplasmic reticulum lumen (ortholog); membrane (ortholog) NW_004955492 3845406 3911671 + 102021987 AGCD01060701;AGCD01060702;AGCD01060703;AGCD01060704;AGCD01060705;GBBH01198228;GBDF01009565;XM_013504712 XP_013360166 MODEL 9044425 pseudo LOC102012045 chromobox protein homolog 3 pseudogene NW_004955402 54299108 54299688 - 102012045 AGCD01001394 MODEL 9042516 pseudo LOC102012474 39S ribosomal protein L18, mitochondrial pseudogene NW_004955540 2266992 2270829 - 102012474 AGCD01071316 MODEL 8702598 protein-coding Srek1ip1 SREK1 interacting protein 1 NW_004955446 4230559 4267331 + 102021718 AGCD01040034;GBDF01047867;XM_005392633 XP_005392690 MODEL 8914789 ncrna LOC102010085 uncharacterized LOC102010085 NW_004955518 1844184 1923729 + 102010085 AGCD01067766;AGCD01067767;AGCD01067768;AGCD01067769;GBDJ01260326;XR_264565 MODEL 8789275 protein-coding Tnf tumor necrosis factor ENCODES a protein that exhibits cytokine activity (ortholog); histone H3K9ac reader activity (ortholog); identical protein binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); antiviral innate immune response (ortholog); apoptotic signaling pathway (ortholog); PARTICIPATES IN ceramide signaling pathway; Fc epsilon receptor mediated signaling pathway; interleukin-23 signaling pathway; ASSOCIATED WITH otitis media; Streptococcal Infections; acne (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); extracellular region (ortholog) NW_004955437 117267 119899 + 102012472 AGCD01034101;GBDI01328104;XM_005389324 XP_005389381 MODEL 8914392 protein-coding Ift54 intraflagellar transport 54 INVOLVED IN cilium assembly (ortholog); embryonic camera-type eye development (ortholog); embryonic digit morphogenesis (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); Ellis-Van Creveld syndrome (ortholog); genetic disease (ortholog); FOUND IN axoneme (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955542 2264472 2301083 - 102024052 AGCD01071516;AGCD01071517;GBDJ01272447;GBDK01234988;XM_005411182 XP_005411239 MODEL 8816217 protein-coding Kntc1 kinetochore associated 1 INVOLVED IN mitotic spindle assembly checkpoint signaling (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytosol (ortholog); kinetochore microtubule (ortholog); RZZ complex (ortholog) NW_004955482 6040964 6119814 - 102030079 AGCD01057370;AGCD01057371;AGCD01057372;AGCD01057373;AGCD01057374;GBDF01123416;XM_005403078;XM_005403079;XM_013503705 XP_005403135;XP_005403136;XP_013359159 MODEL 10235798 pseudo LOC106146711 EKC/KEOPS complex subunit LAGE3 pseudogene NW_004955493 7309024 7319240 - 106146711 AGCD01061178;AGCD01061179 MODEL 9002061 pseudo LOC102027016 muskelin pseudogene NW_004955546 349745 351946 - 102027016 AGCD01071967 MODEL 10161952 protein-coding LOC106150104 translation initiation factor IF-2-like NW_004955465 11570585 11572537 - 106150104 AGCD01050527;GBCE01030369;GBDF01111956;XM_013521766 XP_013377220 MODEL 616940645 scarna SCARNA11 small Cajal body-specific RNA 11 9011211 pseudo LOC102015433 non-histone chromosomal protein HMG-14 pseudogene NW_004955431 1969993 1970549 - 102015433 AGCD01029919 MODEL 9041653 protein-coding Si sucrase-isomaltase ENCODES a protein that exhibits alpha-1,4-glucosidase activity (ortholog); beta-fructofuranosidase activity (ortholog); oligo-1,6-glucosidase activity (ortholog); INVOLVED IN carbohydrate utilization (ortholog); intestinal epithelial cell maturation (ortholog); response to cortisone (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; glycogen storage disease type III pathway; glycogen storage disease type IV pathway; ASSOCIATED WITH colitis (ortholog); congenital sucrase-isomaltase deficiency (ortholog); exocrine pancreatic insufficiency (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog) NW_004955448 14686315 14777298 - 102009668 AGCD01041642;AGCD01041643;AGCD01041644;AGCD01041645;GBCQ01066789;XM_005393136 XP_005393193 MODEL 8948531 protein-coding LOC102003196 alanyl-tRNA editing protein Aarsd1-like NW_004955451 16762844 16769585 - 102003196 AGCD01043704;AGCD01043705;GBDJ01008508;XM_013519243 XP_013374697 MODEL 8968151 protein-coding LOC102009291 uncharacterized LOC102009291 NW_004955495 1844763 1851588 - 102009291 AGCD01061735;GBBH01140669;XM_005405612;XM_005405613;XM_005405614;XM_013505148 XP_005405669;XP_005405670;XP_005405671;XP_013360602 MODEL 8933107 protein-coding LOC102005950 cytochrome P450 2C55 NW_004955507 1146694 1227783 + 102005950 AGCD01065516;AGCD01065517;AGCD01065518;AGCD01065519;AGCD01065520;AGCD01065521;AGCD01065522;AGCD01065523;AGCD01065524;AGCD01065525;AGCD01065526;GBDI01308871;XM_005407534;XM_013506231 XP_005407591;XP_013361685 MODEL 8709435 protein-coding Pole DNA polymerase epsilon, catalytic subunit ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN base-excision repair, gap-filling (ortholog); DNA biosynthetic process (ortholog); DNA replication (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH ascending colon cancer (ortholog); astroblastoma (ortholog); breast cancer (ortholog); FOUND IN epsilon DNA polymerase complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955482 373467 418000 + 102019698 AGCD01057171;AGCD01057172;GBDF01088484;XM_005402950;XM_005402952;XM_013503642;XM_013503643 XP_005403007;XP_005403009;XP_013359096;XP_013359097 MODEL 8965816 ncrna LOC102006305 uncharacterized LOC102006305 NW_004955404 24896406 24991834 - 102006305 AGCD01003836;AGCD01003837;AGCD01003838;AGCD01003839;AGCD01003840;GBDF01084048;XR_001235103;XR_001235104 MODEL 8952718 protein-coding Pip4p2 phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 ENCODES a protein that exhibits phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity (ortholog); INVOLVED IN negative regulation of phagocytosis (ortholog); phosphatidylinositol dephosphorylation (ortholog); FOUND IN late endosome membrane (ortholog); lysosomal membrane (ortholog); phagocytic vesicle membrane (ortholog) NW_004955417 7769365 7825892 - 102013504 AGCD01018015;AGCD01018016;GBDF01209250;XM_013512854 XP_013368308 MODEL 8899036 pseudo LOC102007401 zinc finger MYM-type protein 5-like NW_004955452 14055063 14061537 + 102007401 AGCD01044449 MODEL 8714406 protein-coding LOC102025274 olfactory receptor 9I1-like NW_004955511 2929294 2930226 + 102025274 AGCD01066436;XM_005408021 XP_005408078 MODEL 10143354 ncrna LOC106146996 uncharacterized LOC106146996 NW_004955511 2935958 2956920 - 106146996 AGCD01066436;AGCD01066437;GBDF01177114;XR_001231689;XR_001231690;XR_001231691;XR_001231692 MODEL 9000004 protein-coding LOC102030119 double homeobox protein 4C-like NW_004955435 17750842 17812202 - 102030119 AGCD01033365;AGCD01033366;AGCD01033367;AGCD01033368;AGCD01033369;AGCD01033370;AGCD01033371;AGCD01033372;GBDI01279861;XM_013516408 XP_013371862 MODEL 10323349 protein-coding LOC106146568 uncharacterized LOC106146568 NW_004955485 974711 982896 + 106146568 AGCD01058469;AGCD01058470;GBDI01047964;XM_013504021 XP_013359475 MODEL 153211021 protein-coding LCE7A late cornified envelope 7A 8985951 ncrna LOC102027692 uncharacterized LOC102027692 NW_004955446 6511788 6564170 + 102027692 AGCD01040098;AGCD01040099;AGCD01040100;GBDF01234484;XR_262375 MODEL 8918766 protein-coding Spc25 SPC25 component of NDC80 kinetochore complex INVOLVED IN attachment of spindle microtubules to kinetochore (ortholog); chromosome segregation (ortholog); mitotic spindle organization (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN cytosol (ortholog); kinetochore (ortholog); Ndc80 complex (ortholog) NW_004955449 5533464 5556341 + 102004764 AGCD01041939;AGCD01041940;AGCD01041941;GBDJ01093547;XM_005393272;XM_005393273;XM_013518795 XP_005393329;XP_005393330;XP_013374249 MODEL 39133435 snrna U4 U4 spliceosomal RNA 9064854 protein-coding Pafah1b2 platelet activating factor acetylhydrolase 1b catalytic subunit 2 ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); identical protein binding (ortholog); platelet-activating factor acetyltransferase activity (ortholog); INVOLVED IN positive regulation of macroautophagy (ortholog); spermatogenesis (ortholog); PARTICIPATES IN altered Reelin signaling pathway; Reelin signaling pathway; ASSOCIATED WITH lymphoma (ortholog); status epilepticus (ortholog); FOUND IN 1-alkyl-2-acetylglycerophosphocholine esterase complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955412 18471621 18494082 + 102023992 AGCD01012943;AGCD01012944;GBDF01120966;XM_005378195 XP_005378252 MODEL 8824262 protein-coding LOC102018506 cytochrome c oxidase subunit 4 isoform 2, mitochondrial INVOLVED IN cellular response to hypoxia (ortholog); mitochondrial electron transport, cytochrome c to oxygen (ortholog); ASSOCIATED WITH Exocrine Pancreatic Insufficiency, Dyserythropoietic Anemia, and Calvarial Hyperostosis (ortholog); FOUND IN mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955422 29320720 29329082 - 102018506 AGCD01023390;GBBH01150060;GBCQ01033098;XM_005384903 XP_005384960 MODEL 9035296 protein-coding Xpr1 xenotropic and polytropic retrovirus receptor 1 ENCODES a protein that exhibits efflux transmembrane transporter activity (ortholog); inositol hexakisphosphate binding (ortholog); phosphate transmembrane transporter activity (ortholog); INVOLVED IN intracellular phosphate ion homeostasis (ortholog); phosphate ion transmembrane transport (ortholog); response to virus (ortholog); ASSOCIATED WITH basal ganglia disease (ortholog); calcinosis (ortholog); genetic disease (ortholog); FOUND IN plasma membrane (ortholog) NW_004955406 19831398 19980994 + 102011949 AGCD01006093;AGCD01006094;AGCD01006095;GBDF01122624;XM_013503153 XP_013358607 MODEL 8805463 ncrna LOC102026676 uncharacterized LOC102026676 NW_004955440 15338139 15342707 + 102026676 AGCD01036490;GBDF01253069;XR_262022 MODEL 8982585 protein-coding Trpt1 tRNA phosphotransferase 1 ENCODES a protein that exhibits tRNA 2'-phosphotransferase activity (ortholog); INVOLVED IN regulation of protein kinase activity (ortholog); tRNA splicing, via endonucleolytic cleavage and ligation (ortholog) NW_004955422 20851806 20854349 + 102020577 AGCD01023095;GBDF01118758;XM_005384638;XM_005384641;XM_013513959 XP_005384695;XP_005384698;XP_013369413 MODEL 8880134 protein-coding LOC102029410 zinc finger protein 564-like NW_004955495 2437158 2445046 + 102029410 AGCD01061774;AGCD01061775;AGCD01061776;GBDK01132210;XM_005405682;XM_013505120 XP_005405739;XP_013360574 MODEL 10229322 protein-coding LOC106146319 zinc finger protein 160-like NW_004955558 130503 140620 - 106146319 AGCD01073344;GBDF01041324;XM_013508841 XP_013364295 MODEL 8835388 protein-coding Phb2 prohibitin 2 ENCODES a protein that exhibits binding (ortholog); identical protein binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); B cell activation (ortholog); cell migration (ortholog); PARTICIPATES IN estrogen signaling pathway; mitochondria fusion pathway; tamoxifen pharmacodynamics pathway; ASSOCIATED WITH Brain Injuries (ortholog); FOUND IN axon (ortholog); cell periphery (ortholog); cell surface (ortholog) NW_004955413 4557969 4563697 - 102010570 AGCD01013621;GBDJ01024188;XM_005378852 XP_005378909 MODEL 9012435 ncrna LOC102008944 uncharacterized LOC102008944 NW_004955417 25705054 25707401 - 102008944 AGCD01018493;GBCE01099798;XR_260495 MODEL 8903725 protein-coding Tex261 testis expressed 261 INVOLVED IN positive regulation of apoptotic process (ortholog) NW_004955424 14233322 14246222 + 102029414 AGCD01024648;GBDJ01309647;XM_005385604;XM_013514639 XP_005385661;XP_013370093 MODEL 39132289 snorna SNORD33 Small nucleolar RNA Z195/SNORD33/SNORD32 family 8739190 pseudo LOC102023868 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 pseudogene NW_004955452 15134132 15134925 + 102023868 AGCD01044480 MODEL 8803288 ncrna LOC102028334 uncharacterized LOC102028334 NW_004955437 6272172 6273098 - 102028334 AGCD01034426;XR_261862 MODEL 8709553 ncrna LOC102024170 uncharacterized LOC102024170 NW_004955445 701392 713169 + 102024170 AGCD01039323;GBDK01292464;XR_001235572;XR_001235573;XR_262289 MODEL 8964043 protein-coding Slc30a7 solute carrier family 30 member 7 ENCODES a protein that exhibits identical protein binding (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN intracellular zinc ion homeostasis (ortholog); zinc ion import into Golgi lumen (ortholog); zinc ion transport (ortholog); ASSOCIATED WITH Esophageal Neoplasms (ortholog); Hypogonadism and Testicular Atrophy (ortholog); ZIEGLER-HUANG SYNDROME (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); Golgi apparatus (ortholog) NW_004955435 5530591 5609613 + 102007585 AGCD01032891;AGCD01032892;GBBH01036681;XM_005388805 XP_005388862 MODEL 8851772 protein-coding Bltp1 bridge-like lipid transfer protein family member 1 INVOLVED IN endocytic recycling (ortholog); endosomal transport (ortholog); lipid transport (ortholog); ASSOCIATED WITH Alkuraya-Kucinskas syndrome (ortholog); clubfoot (ortholog); Dandy-Walker syndrome (ortholog) NW_004955428 18224987 18424425 - 102016180 AGCD01028058;AGCD01028059;AGCD01028060;AGCD01028061;AGCD01028062;AGCD01028063;GBDJ01004871;XM_005386777;XM_013515288;XM_013515289;XM_013515290;XM_013515291;XM_013515292;XM_013515293;XM_013515294;XM_013515295 XP_005386834;XP_013370742;XP_013370743;XP_013370744;XP_013370745;XP_013370746;XP_013370747;XP_013370748;XP_013370749 MODEL 9006878 protein-coding Erp27 endoplasmic reticulum protein 27 FOUND IN endoplasmic reticulum lumen (ortholog) NW_004955413 11650920 11670127 - 102004050 AGCD01013966;GBCE01143801;XM_005379014;XM_013511584;XM_013511585 XP_005379071;XP_013367038;XP_013367039 MODEL 10104725 ncrna LOC106146442 uncharacterized LOC106146442 NW_004955479 3473026 3481100 - 106146442 AGCD01056294;XR_001230875 MODEL 8778166 protein-coding Ndufaf7 NADH:ubiquinone oxidoreductase complex assembly factor 7 ENCODES a protein that exhibits enzyme binding (ortholog); protein-arginine omega-N symmetric methyltransferase activity (ortholog); INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); peptidyl-arginine methylation, to symmetrical-dimethyl arginine (ortholog); FOUND IN mitochondrion (ortholog) NW_004955441 5033754 5051720 + 102005971 AGCD01036867;GBDF01044676;XM_005390873;XM_013517532;XM_013517533 XP_005390930;XP_013372986;XP_013372987 MODEL 9037931 protein-coding Pip5k1a phosphatidylinositol-4-phosphate 5-kinase type 1 alpha ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); kinase binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cell chemotaxis (ortholog); fibroblast migration (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; E-cadherin signaling pathway; phosphoinositide metabolic pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 60 with seizures (ortholog); Experimental Neoplasms (ortholog); Lymphatic Metastasis (ortholog); FOUND IN cytosol (ortholog); lamellipodium (ortholog); nuclear speck (ortholog) NW_004955588 555818 605459 + 102027700 AGCD01076115;AGCD01076116;AGCD01076117;GBBH01027015;XM_013509927;XM_013509928;XM_013509929;XM_013509930;XR_001232530 XP_013365381;XP_013365382;XP_013365383;XP_013365384 MODEL 8881077 ncrna LOC102003500 uncharacterized LOC102003500 NW_004955575 638720 645615 + 102003500 AGCD01075227;GBDK01352758;XR_265069 MODEL 8928196 pseudo LOC102025608 40S ribosomal protein S25 pseudogene NW_004955429 20058595 20059008 - 102025608 AGCD01028977 MODEL 8990640 pseudo LOC102004551 small nuclear ribonucleoprotein-associated protein B pseudogene NW_004955451 1697358 1700887 - 102004551 AGCD01042977;AGCD01042978 MODEL 9005667 pseudo LOC102018113 periphilin-1 pseudogene NW_004955503 1977626 1979433 + 102018113 AGCD01064593;XM_005406925 MODEL 10088482 pseudo LOC102020653 Ig kappa chain V-III region VG-like NW_004955470 685190 685883 - 102020653 AGCD01052618 MODEL 8832511 protein-coding Lck LCK proto-oncogene, Src family tyrosine kinase ENCODES a protein that exhibits antigen binding (ortholog); ATPase binding (ortholog); CD4 receptor binding (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); CD27 signaling pathway (ortholog); cell surface receptor signaling pathway (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; glypican signaling pathway; ASSOCIATED WITH allergic conjunctivitis (ortholog); dilated cardiomyopathy (ortholog); human immunodeficiency virus infectious disease (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); endocytic vesicle (ortholog) NW_004955452 10608317 10632310 + 102019766 AGCD01044281;AGCD01044282;AGCD01044283;GBDJ01388405;XM_005395058;XM_005395059 XP_005395115;XP_005395116 MODEL 10313141 pseudo LOC106149280 methylosome subunit pICln pseudogene NW_004955442 3242039 3243148 - 106149280 AGCD01037501 MODEL 8738028 ncrna LOC102009292 uncharacterized LOC102009292 NW_004955423 372935 383250 + 102009292 AGCD01023411;GBDI01297765;XR_260937 MODEL 9021298 ncrna LOC102012046 uncharacterized LOC102012046 NW_004955403 2740603 2756599 + 102012046 AGCD01001738;GBDF01080335;XR_259139 MODEL 8867422 pseudo LOC102019667 caprin-1 pseudogene NW_004955407 32716950 32719033 - 102019667 AGCD01007680 MODEL 8917734 protein-coding Trpv1 transient receptor potential cation channel subfamily V member 1 ENCODES a protein that exhibits ATP binding (ortholog); calcium channel activity (ortholog); calmodulin binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); calcium ion import across plasma membrane (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH Acute Hepatitis (ortholog); Acute Lung Injury (ortholog); alcohol withdrawal syndrome (ortholog); FOUND IN axon terminus (ortholog); dendrite (ortholog); external side of plasma membrane (ortholog) NW_004955467 13221391 13239089 + 102022802 AGCD01051668;AGCD01051669;XM_005399725 XP_005399782 MODEL 8936265 pseudo LOC102010087 heparan-alpha-glucosaminide N-acetyltransferase pseudogene NW_004955434 9056708 9057564 - 102010087 AGCD01032287 MODEL 8768174 pseudo LOC102030120 peptidyl-prolyl cis-trans isomerase A pseudogene NW_004955532 3012339 3012865 + 102030120 AGCD01070265 MODEL 39133344 snorna SCARNA12 small Cajal body-specific RNA 12 10138618 protein-coding LOC106146443 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like NW_004955406 37644729 37645292 - 106146443 AGCD01006578;XM_013503271 XP_013358725 MODEL 8885207 protein-coding Ift56 intraflagellar transport 56 ENCODES a protein that exhibits intraciliary transport particle B binding (ortholog); INVOLVED IN axoneme assembly (ortholog); cilium assembly (ortholog); intraciliary transport (ortholog); ASSOCIATED WITH BILIARY, RENAL, NEUROLOGIC, AND SKELETAL SYNDROME (ortholog); Caroli disease (ortholog); hydrocephalus (ortholog); FOUND IN centrosome (ortholog); ciliary basal body (ortholog); cilium (ortholog) NW_004955494 3861679 3905499 - 102028648 AGCD01061488;AGCD01061489;AGCD01061490;GBDF01120106;XM_005405446;XM_005405447 XP_005405503;XP_005405504 MODEL 9054170 protein-coding Erp29 endoplasmic reticulum protein 29 ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein-folding chaperone binding (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); negative regulation of gene expression (ortholog); negative regulation of protein secretion (ortholog); PARTICIPATES IN codeine and morphine pharmacodynamics pathway; codeine and morphine pharmacokinetics pathway; etoposide pharmacodynamics pathway; ASSOCIATED WITH hepatocellular carcinoma (ortholog); lung adenocarcinoma (ortholog); Neoplasm Metastasis (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum (ortholog); extracellular region (ortholog) NW_004955482 8572227 8579589 + 102006663 AGCD01057536;AGCD01057537;GBDF01045015;XM_005403185;XM_005403186 XP_005403242;XP_005403243 MODEL 8882092 ncrna LOC102015436 uncharacterized LOC102015436 NW_004955517 1432841 1436327 - 102015436 AGCD01067597;GBDK01244529;XR_001231817;XR_001231818 MODEL 10172420 ncrna LOC106148089 uncharacterized LOC106148089 NW_004955403 8497955 8505527 + 106148089 AGCD01001879;GBDF01024615;XR_001233223 MODEL 8834455 protein-coding Pip5k1b phosphatidylinositol-4-phosphate 5-kinase type 1 beta ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); INVOLVED IN phosphatidylinositol biosynthetic process (ortholog); phosphatidylinositol metabolic process (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; FOUND IN cytosol (ortholog); uropod (ortholog) NW_004955434 4020219 4315072 - 102008762 AGCD01032154;AGCD01032155;AGCD01032156;AGCD01032157;GBCE01043004;XM_005388578;XM_013516346;XM_013516347;XM_013516348;XM_013516349 XP_005388635;XP_013371800;XP_013371801;XP_013371802;XP_013371803 MODEL 8734297 protein-coding Siae sialic acid acetylesterase ENCODES a protein that exhibits sialate O-acetylesterase activity (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); regulation of immune system process (ortholog); ASSOCIATED WITH autoimmune disease (ortholog); FOUND IN lysosome (ortholog) NW_004955412 25704024 25741646 - 102011521 AGCD01013171;AGCD01013172;AGCD01013173;GBBH01172315;XM_005378431;XM_005378432 XP_005378488;XP_005378489 MODEL 10185729 ncrna LOC106146324 uncharacterized LOC106146324 NW_004955567 1715557 1716469 + 106146324 AGCD01074488;GBDF01111071;XR_001232423 MODEL 8865835 protein-coding Xrcc1 X-ray repair cross complementing 1 ENCODES a protein that exhibits 3' overhang single-stranded DNA endonuclease activity (ortholog); ADP-D-ribose modification-dependent protein binding (ortholog); enzyme binding (ortholog); INVOLVED IN base-excision repair (ortholog); DNA damage response (ortholog); DNA repair (ortholog); PARTICIPATES IN base excision repair pathway; nucleotide excision repair pathway; ASSOCIATED WITH 5 Alpha Fluorouracil Toxicity (ortholog); acute lymphoblastic leukemia (ortholog); asphyxia neonatorum (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); chromosome, telomeric region (ortholog) NW_004955555 1293416 1315839 - 102016958 AGCD01073070;AGCD01073071;AGCD01073072;GBDF01053241;XM_005412443;XM_005412444 XP_005412500;XP_005412501 MODEL 8702850 protein-coding LOC102029415 oocyte zinc finger protein XlCOF6-like NW_004955499 218603 226070 - 102029415 AGCD01063201;GBDF01248845;XM_013505560 XP_013361014 MODEL 8982998 pseudo LOC102012478 60S ribosomal protein L39 pseudogene NW_004955442 7979367 7988554 - 102012478 AGCD01037634;AGCD01037635;XM_005391201;XM_005391202 MODEL 8889115 protein-coding LOC102018114 T-cell receptor-associated transmembrane adapter 1 INVOLVED IN negative regulation of receptor recycling (ortholog); negative regulation of transport (ortholog); positive regulation of calcium-mediated signaling (ortholog); FOUND IN centriolar satellite (ortholog); plasma membrane (ortholog); T cell receptor complex (ortholog) NW_004955427 9665479 9700305 + 102018114 AGCD01027104;GBDI01087718;XM_005386363;XM_013515031;XM_013515032 XP_005386420;XP_013370485;XP_013370486 MODEL 8960796 protein-coding Tex264 testis expressed 264, ER-phagy receptor ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN protein-DNA covalent cross-linking repair (ortholog); reticulophagy (ortholog); FOUND IN autophagosome membrane (ortholog); chromosome (ortholog); cytosol (ortholog) NW_004955532 3278214 3306045 + 102018325 AGCD01070276;GBCQ01010042;GBDI01017838;XM_005410319 XP_005410376 MODEL 39132287 snorna SNORD33 Small nucleolar RNA Z195/SNORD33/SNORD32 family 10308178 protein-coding LOC106146569 uncharacterized LOC106146569 NW_004955485 1025655 1028666 + 106146569 AGCD01058470;XM_013504022 XP_013359476 MODEL 8841343 protein-coding LOC102006309 UDP-glucuronosyltransferase 1-8 NW_004955453 2386649 2547914 - 102006309 AGCD01044625;AGCD01044626;AGCD01044627;AGCD01044628;AGCD01044629;AGCD01044630;AGCD01044631;GBDI01068255;XM_005395338;XM_005395339;XM_005395340;XM_005395341;XM_013519894;XM_013519895;XM_013519897;XM_013519898 XP_005395395;XP_005395396;XP_005395397;XP_005395398;XP_013375348;XP_013375349;XP_013375351;XP_013375352 MODEL 9003519 pseudo LOC102027017 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955548 608537 631874 - 102027017 AGCD01072338 MODEL 8932060 protein-coding Srf serum response factor ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); associative learning (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); cardiomyopathy (ortholog); Cardiovascular Abnormalities (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955437 9100546 9109305 + 102019639 AGCD01034516;GBCB01002619;GBCQ01154048;XM_013516907 XP_013372361 MODEL 8728209 protein-coding Tnfaip1 TNF alpha induced protein 1 ENCODES a protein that exhibits cyclin binding (ortholog); identical protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN cell migration (ortholog); immune response (ortholog); negative regulation of Rho protein signal transduction (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog); endosome (ortholog) NW_004955481 4786015 4799376 - 102008626 AGCD01056952;AGCD01056953;GBDJ01273979;XM_005402768;XM_005402769 XP_005402825;XP_005402826 MODEL 8702063 protein-coding Bltp2 bridge-like lipid transfer protein family member 2 ASSOCIATED WITH prostate cancer (ortholog) NW_004955481 4509840 4544706 + 102029080 AGCD01056943;GBCE01116508;GBCQ01065420;XM_005402743 XP_005402800 MODEL 8936061 protein-coding Spcs1 signal peptidase complex subunit 1 ENCODES a protein that exhibits ribosome binding (ortholog); INVOLVED IN protein processing (ortholog); viral protein processing (ortholog); virion assembly (ortholog); PARTICIPATES IN biotin metabolic pathway; biotinidase deficiency pathway; holocarboxylase synthetase deficiency pathway; FOUND IN endoplasmic reticulum membrane (ortholog); signal peptidase complex (ortholog) NW_004955430 2689927 2692119 + 102025148 AGCD01029176;GBDF01145772;XM_005387349;XM_005387350 XP_005387406;XP_005387407 MODEL 10316787 ncrna LOC106150105 uncharacterized LOC106150105 NW_004955465 11835697 11841804 + 106150105 AGCD01050536;GBDJ01200174;XR_001236722 MODEL 8702310 protein-coding Tex28 testis expressed 28 ASSOCIATED WITH periventricular nodular heterotopia (ortholog) NW_004955580 781339 791284 - 102009777 AGCD01075622;XM_005414223 XP_005414280 MODEL 8945805 ncrna LOC102018513 uncharacterized LOC102018513 NW_004955426 16028415 16032540 + 102018513 AGCD01026457;GBDF01159738;XR_261197 MODEL 8811858 ncrna LOC102003197 uncharacterized LOC102003197 NW_004955404 43067814 43068635 - 102003197 AGCD01004373;GBDF01288559;XR_259335 MODEL 8780663 ncrna LOC102005951 uncharacterized LOC102005951 NW_004955429 3029946 3056828 + 102005951 AGCD01028449;AGCD01028450;AGCD01028451;AGCD01028452;AGCD01028453;AGCD01028454;GBDF01054382;XR_261312 MODEL 10215755 pseudo LOC106149281 small nuclear ribonucleoprotein-associated protein B-like NW_004955442 16743630 16745874 + 106149281 AGCD01037907 MODEL 8872467 pseudo LOC102025275 heterogeneous nuclear ribonucleoprotein H3-like NW_004955429 20021277 20022100 - 102025275 AGCD01028976 MODEL 8944367 protein-coding Pole2 DNA polymerase epsilon 2, accessory subunit INVOLVED IN DNA-templated DNA replication (ortholog); PARTICIPATES IN nucleotide excision repair pathway; FOUND IN epsilon DNA polymerase complex (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955409 12983488 13014669 + 102029717 AGCD01009585;AGCD01009586;GBBH01205801;GBDF01081361;XM_013510466 XP_013365920 MODEL 8901115 pseudo LOC102028344 high mobility group protein B1 pseudogene NW_004955556 595449 596043 - 102028344 AGCD01073176 MODEL 8805284 protein-coding LOC102020670 histone H3 NW_004955483 979276 984732 + 102020670 AGCD01057638;XM_005403308;XM_013503789 XP_005403365;XP_013359243 MODEL 10264738 protein-coding LOC106146997 uncharacterized LOC106146997 NW_004955511 4163198 4169584 - 106146997 AGCD01066494;GBDF01001763;XM_013506410 XP_013361864 MODEL 8909157 pseudo LOC102021455 calcyclin-binding protein pseudogene NW_004955422 12772330 12772978 - 102021455 AGCD01022798 MODEL 8934859 protein-coding Lclat1 lysocardiolipin acyltransferase 1 ENCODES a protein that exhibits 1-acylglycerol-3-phosphate O-acyltransferase activity (ortholog); acyltransferase activity (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955469 12234689 12431951 + 102020999 AGCD01052580;AGCD01052581;GBDK01177327;XM_005400553;XM_005400554;XM_005400555;XM_005400556;XM_013522665;XM_013522666;XM_013522667;XM_013522668 XP_005400610;XP_005400611;XP_005400612;XP_005400613;XP_013378119;XP_013378120;XP_013378121;XP_013378122 MODEL 8818746 protein-coding Kplce KPRP N-terminal and LCE C-terminal like protein NW_004955592 680843 682874 - 102014726 AGCD01076320;GBCC01015742;XM_005414624 XP_005414681 MODEL 10227815 protein-coding LOC106146325 zinc finger protein 555-like NW_004955495 5438412 5440151 - 106146325 AGCD01062007;GBDF01279281;XM_013505259 XP_013360713 MODEL 10132134 protein-coding LOC106146712 uncharacterized LOC106146712 NW_004955493 6911057 6918910 - 106146712 AGCD01061147;GBCE01179335;XM_013504782 XP_013360236 MODEL 39133436 snrna U4 U4 spliceosomal RNA 8973101 protein-coding LOC102012047 PRAME family member 9/15-like NW_004955618 227974 229557 - 102012047 AGCD01077320;XM_013510149 XP_013365603 MODEL 8890214 protein-coding Slc30a8 solute carrier family 30 member 8 ENCODES a protein that exhibits protein homodimerization activity (ortholog); zinc ion transmembrane transporter activity (ortholog); zinc:proton antiporter activity (ortholog); INVOLVED IN glucose homeostasis (ortholog); insulin processing (ortholog); insulin secretion (ortholog); ASSOCIATED WITH maturity-onset diabetes of the young type 1 (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN cytoplasmic vesicle (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955417 23207146 23239170 + 102030631 AGCD01018434;GBDF01144404;XM_013512711 XP_013368165 MODEL 9058874 protein-coding Pafah1b3 platelet activating factor acetylhydrolase 1b catalytic subunit 3 ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); identical protein binding (ortholog); platelet-activating factor acetyltransferase activity (ortholog); INVOLVED IN spermatogenesis (ortholog); PARTICIPATES IN altered Reelin signaling pathway; Reelin signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN 1-alkyl-2-acetylglycerophosphocholine esterase complex (ortholog); cytoplasm (ortholog) NW_004955555 609925 612701 + 102024055 AGCD01073039;GBDF01051852;XM_005412366;XM_013508687 XP_005412423;XP_013364141 MODEL 8741032 protein-coding Xrcc2 X-ray repair cross complementing 2 ENCODES a protein that exhibits four-way junction DNA binding (ortholog); INVOLVED IN centrosome cycle (ortholog); DNA damage response (ortholog); DNA repair (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH breast carcinoma (ortholog); Breast Neoplasms (ortholog); colon cancer (ortholog); FOUND IN centrosome (ortholog); Rad51B-Rad51C-Rad51D-XRCC2 complex (ortholog); replication fork (ortholog) NW_004955491 6579443 6629410 - 102013094 AGCD01060554;AGCD01060555;AGCD01060556;AGCD01060557;GBDF01185427;XM_005404847;XM_005404851;XM_013504663;XR_001231241;XR_001231242 XP_005404904;XP_005404908;XP_013360117 MODEL 8982202 pseudo LOC102003512 60S ribosomal protein L17-like NW_004955405 31689835 31691569 + 102003512 AGCD01005302 MODEL 9059923 pseudo LOC102004556 chromatin target of PRMT1 protein pseudogene NW_004955454 5724497 5725303 + 102004556 AGCD01045185 MODEL 8911961 pseudo LOC102010093 ubiquitin carboxyl-terminal hydrolase isozyme L5 pseudogene NW_004955439 3610566 3611918 + 102010093 AGCD01035681 MODEL 8769366 protein-coding Phc1 polyhomeotic homolog 1 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); cellular response to retinoic acid (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH dilated cardiomyopathy (ortholog); Germ Cell and Embryonal Neoplasms (ortholog); intellectual disability (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955413 6156934 6176460 - 102023793 AGCD01013710;GBBH01033996;XM_005378897 XP_005378954 MODEL 8977581 ncrna LOC102008945 uncharacterized LOC102008945 NW_004955418 195005 213629 + 102008945 AGCD01018668;AGCD01018669;GBDF01000281;XR_001233498;XR_001233499 MODEL 9002952 pseudo LOC102007410 non-histone chromosomal protein HMG-14 pseudogene NW_004955459 7208563 7208865 + 102007410 AGCD01048098 MODEL 9007511 protein-coding LOC102030124 cholesterol 24-hydroxylase ENCODES a protein that exhibits cholesterol 24-hydroxylase activity (ortholog); heme binding (ortholog); steroid hydroxylase activity (ortholog); INVOLVED IN cholesterol catabolic process (ortholog); progesterone metabolic process (ortholog); protein localization to membrane raft (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH alcohol use disorder (ortholog); Alzheimer's disease (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN dendrite (ortholog); endoplasmic reticulum membrane (ortholog); postsynapse (ortholog) NW_004955438 20961621 20986260 + 102030124 AGCD01035528;GBDF01207701;GBDK01378042;XM_005390418;XM_013517290 XP_005390475;XP_013372744 MODEL 8712019 protein-coding Ift57 intraflagellar transport 57 INVOLVED IN apoptotic process (ortholog); heart looping (ortholog); left/right pattern formation (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Huntington's disease (ortholog); orofaciodigital syndrome XVIII (ortholog); FOUND IN axoneme (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955427 8814298 8871671 - 102013524 AGCD01027078;AGCD01027079;GBBH01033666;XM_005386354 XP_005386411 MODEL 10354871 pseudo LOC106146444 60S ribosomal protein L17 pseudogene NW_004955479 10153458 10154068 + 106146444 AGCD01056526 MODEL 9016744 protein-coding LOC102015439 acyl-coenzyme A thioesterase 1-like NW_004955523 1749817 1868724 - 102015439 AGCD01068541;AGCD01068542;AGCD01068543;AGCD01068544;AGCD01068545;AGCD01068546;AGCD01068547;AGCD01068548;AGCD01068549;GBCB01023483;GBDJ01018057;XM_005409472 XP_005409529 MODEL 8796598 pseudo LOC102027693 histone deacetylase 1 pseudogene NW_004955571 1030760 1032344 + 102027693 AGCD01074866 MODEL 8704139 protein-coding LOC102024173 testis-specific serine/threonine-protein kinase 1-like NW_004955446 5256392 5257796 - 102024173 AGCD01040061;GBDK01384059;XM_005392640 XP_005392697 MODEL 8851121 ncrna LOC102025610 uncharacterized LOC102025610 NW_004955514 5084675 5086660 + 102025610 AGCD01067147;GBDF01208536;XR_264513 MODEL 8956947 protein-coding LOC102026677 zinc finger protein 709-like NW_004955546 302155 306890 - 102026677 AGCD01071962;AGCD01071963;GBDJ01019157;XM_013508424 XP_013363878 MODEL 8873584 pseudo LOC102006312 uncharacterized LOC102006312 NW_004955454 13491911 13530089 - 102006312 AGCD01045438;AGCD01045439;AGCD01045440;AGCD01045441;AGCD01045442;AGCD01045443;AGCD01045444 MODEL 9059283 protein-coding Bltp3a bridge-like lipid transfer protein family member 3A ENCODES a protein that exhibits histone deacetylase binding (ortholog); identical protein binding (ortholog); ASSOCIATED WITH Familial Prostate Cancer (ortholog); systemic lupus erythematosus (ortholog); FOUND IN late endosome (ortholog) NW_004955437 2844544 2905073 + 102012244 AGCD01034288;AGCD01034289;AGCD01034290;AGCD01034291;AGCD01034292;GBDF01200537;XM_005390117 XP_005390174 MODEL 10103940 protein-coding LOC106150106 uncharacterized LOC106150106 NW_004955465 8504188 8511042 + 106150106 AGCD01050476;GBDJ01211892;XM_013521769;XM_013521770 XP_013377223;XP_013377224 MODEL 8777151 protein-coding Tex29 testis expressed 29 NW_004955404 1405904 1745715 - 102014637 AGCD01003224;AGCD01003225;AGCD01003226;AGCD01003227;AGCD01003228;GBDK01178785;XM_013515713;XM_013515715 XP_013371167;XP_013371169 MODEL 8806420 protein-coding Pip5k1c phosphatidylinositol-4-phosphate 5-kinase type 1 gamma ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); talin binding (ortholog); INVOLVED IN axonogenesis (ortholog); phosphatidylinositol biosynthetic process (ortholog); phosphatidylinositol metabolic process (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; E-cadherin signaling pathway; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH genetic disease (ortholog); lethal congenital contracture syndrome 3 (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytosol (ortholog); endomembrane system (ortholog); endosome membrane (ortholog) NW_004955495 5573549 5616957 - 102006681 AGCD01062014;AGCD01062015;GBDI01125804;XM_005405880;XM_013505222;XM_013505223;XM_013505224;XM_013505225 XP_005405937;XP_013360676;XP_013360677;XP_013360678;XP_013360679 MODEL 8953294 protein-coding LOC102029416 uncharacterized LOC102029416 NW_004955424 21890247 21895503 - 102029416 AGCD01024913;GBDK01095104;XM_005385816 XP_005385873 MODEL 8774439 protein-coding Siah1 siah E3 ubiquitin protein ligase 1 ENCODES a protein that exhibits disordered domain specific binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); male meiosis I (ortholog); neuron apoptotic process (ortholog); ASSOCIATED WITH BURATTI-HAREL SYNDROME (ortholog); genetic disease (ortholog); Spinal Cord Injuries (ortholog); FOUND IN beta-catenin destruction complex (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955474 6970383 6982231 + 102006904 AGCD01054511;GBCB01039065;GBDF01043021;XM_005401400 XP_005401457 MODEL 10316780 pseudo LOC106149282 nuclear receptor-binding factor 2 pseudogene NW_004955442 19468259 19470552 - 106149282 AGCD01038060 MODEL 39131948 snorna SNORD34 Small nucleolar RNA SNORD34 8921312 protein-coding Ndufaf8 NADH:ubiquinone oxidoreductase complex assembly factor 8 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); mitochondrial metabolism disease (ortholog); nuclear type mitochondrial complex I deficiency 34 (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955506 1771044 1773471 - 102010605 AGCD01065273;GBDK01348130;XM_005407296 XP_005407353 MODEL 8958685 protein-coding LOC102019673 myosin-6 NW_004955409 36932705 36955373 + 102019673 AGCD01010484;GBDJ01229901;XM_005377074 XP_005377131 MODEL 8951641 protein-coding Pole3 DNA polymerase epsilon 3, accessory subunit INVOLVED IN chromatin remodeling (ortholog); DNA-templated DNA replication (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN ISWI family mediated chromatin remodeling pathway; nucleotide excision repair pathway; RNA polymerase II transcription initiation pathway; FOUND IN ATAC complex (ortholog); epsilon DNA polymerase complex (ortholog); pericentric heterochromatin (ortholog) NW_004955419 14086940 14089906 + 102019174 AGCD01020011;AGCD01020012;GBBH01117842;GBDF01085263;XM_005382662 XP_005382719 MODEL 10116894 protein-coding LOC106146326 zinc finger protein OZF-like NW_004955495 1079259 1097397 - 106146326 AGCD01061672;AGCD01061673;GBDK01084932;XM_013505049 XP_013360503 MODEL 8823539 pseudo LOC102021458 60S ribosomal protein L27 pseudogene NW_004955494 2795835 2796269 - 102021458 AGCD01061451 MODEL 39133437 snrna U4 U4 spliceosomal RNA 8921061 protein-coding Trpv3 transient receptor potential cation channel subfamily V member 3 ENCODES a protein that exhibits calcium channel activity (ortholog); identical protein binding (ortholog); monoatomic cation channel activity (ortholog); INVOLVED IN negative regulation of hair cycle (ortholog); positive regulation of calcium ion import (ortholog); response to temperature stimulus (ortholog); ASSOCIATED WITH alopecia (ortholog); atopic dermatitis (ortholog); autosomal dominant mutilating palmoplantar keratoderma with periorificial keratotic plaques (ortholog); FOUND IN cytoplasm (ortholog); lysosome (ortholog); membrane (ortholog) NW_004955467 13246099 13276741 + 102024887 AGCD01051669;AGCD01051670;GBDF01247435;XM_013522250 XP_013377704 MODEL 8829807 protein-coding Kpna1 karyopherin subunit alpha 1 ENCODES a protein that exhibits nuclear import signal receptor activity (ortholog); nuclear localization sequence binding (ortholog); INVOLVED IN NLS-bearing protein import into nucleus (ortholog); postsynapse to nucleus signaling pathway (ortholog); regulation of apoptotic process (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955427 21705407 21764913 - 102010714 AGCD01027454;AGCD01027455;AGCD01027456;AGCD01027457;AGCD01027458;GBCB01002472;XM_005386512 XP_005386569 MODEL 10339723 ncrna LOC106146713 uncharacterized LOC106146713 NW_004955493 6930225 6934649 - 106146713 AGCD01061148;AGCD01061149;GBDF01178106;XR_001231271 MODEL 8766597 ncrna LOC102023872 uncharacterized LOC102023872 NW_004955454 8131739 8161226 + 102023872 AGCD01045319;GBDF01221444;XR_001236208;XR_001236209;XR_001236210 MODEL 8831437 protein-coding Erp44 endoplasmic reticulum protein 44 ENCODES a protein that exhibits protein disulfide isomerase activity (ortholog); INVOLVED IN glycoprotein metabolic process (ortholog); protein folding (ortholog); response to endoplasmic reticulum stress (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum lumen (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955419 25584404 25665590 + 102013936 AGCD01020388;AGCD01020389;GBCQ01063714;XM_005382816 XP_005382873 MODEL 10188293 ncrna LOC106148090 uncharacterized LOC106148090 NW_004955415 26565130 26569156 - 106148090 AGCD01016599;GBDF01251465;XR_001233224 MODEL 8912323 ncrna LOC102025611 uncharacterized LOC102025611 NW_004955432 14412866 14414109 - 102025611 AGCD01031042;GBDF01042581;XR_261527 MODEL 9007676 ncrna LOC102005952 uncharacterized LOC102005952 NW_004955429 17092345 17096969 - 102005952 AGCD01028845;GBCQ01165026;XR_001234501;XR_001234502;XR_001234503;XR_261348 MODEL 8728036 pseudo LOC102003198 methylmalonic aciduria and homocystinuria type D protein, mitochondrial pseudogene NW_004955404 48607830 48609942 - 102003198 AGCD01004506 MODEL 8929971 pseudo LOC102009294 volume-regulated anion channel subunit LRRC8D-like NW_004955497 504156 510636 - 102009294 AGCD01062420;AGCD01062421 MODEL 8958426 protein-coding Phc2 polyhomeotic homolog 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN spermatogenesis (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN heterochromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955452 11490336 11538618 - 102008054 AGCD01044337;AGCD01044338;AGCD01044339;GBCQ01006896;XM_013519534;XM_013519535 XP_013374988;XP_013374989 MODEL 8704359 protein-coding LOC102012479 uncharacterized LOC102012479 NW_004955559 461354 469388 - 102012479 AGCD01073586;GBDK01094411;XM_013508927;XM_013508928;XM_013508929;XM_013508930;XM_013508931;XM_013508932;XM_013508933;XM_013508934 XP_013364381;XP_013364382;XP_013364383;XP_013364384;XP_013364385;XP_013364386;XP_013364387;XP_013364388 MODEL 8932114 pseudo LOC102028345 eukaryotic translation initiation factor 4E pseudogene NW_004955442 16260558 16261065 + 102028345 AGCD01037894 MODEL 8895144 pseudo LOC102030125 adapter molecule crk pseudogene NW_004955546 911096 915135 + 102030125 AGCD01072032 MODEL 10289140 protein-coding LOC106146570 uncharacterized LOC106146570 NW_004955485 9440488 9441042 - 106146570 AGCD01058766;GBDF01173981;XM_013504023 XP_013359477 MODEL 8836529 protein-coding LOC102025613 polyadenylate-binding protein, cytoplasmic and nuclear-like NW_004955524 3024879 3026120 + 102025613 AGCD01068852;GBDK01237693;XM_005409582 XP_005409639 MODEL 8796911 protein-coding LOC102015452 chromosome unknown open reading frame, human C14orf132 NW_004955438 16628879 16662868 - 102015452 AGCD01035422;GBCE01114226;XM_013517248 XP_013372702 MODEL 10220337 protein-coding LOC106146998 proline-rich protein HaeIII subfamily 1-like NW_004955511 5437203 5437552 + 106146998 AGCD01066563;GBCE01102026;XM_013506416 XP_013361870 MODEL 8994994 pseudo LOC102012048 60S ribosomal protein L12-like NW_004955403 50676234 50697887 - 102012048 AGCD01002969 MODEL 8757281 protein-coding Srfbp1 serum response factor binding protein 1 ASSOCIATED WITH thoracic aortic aneurysm (ortholog); FOUND IN nucleus (ortholog) NW_004955521 105565 160906 + 102005626 AGCD01068129;AGCD01068130;GBDF01052516;XM_005409286 XP_005409343 MODEL 8771339 protein-coding Tnfaip2 TNF alpha induced protein 2 ASSOCIATED WITH focal segmental glomerulosclerosis (ortholog); rheumatoid arthritis (ortholog) NW_004955538 2159773 2173312 + 102005967 AGCD01071102;AGCD01071103;AGCD01071104;AGCD01071105;GBDF01047699;XM_005410764;XM_005410765 XP_005410821;XP_005410822 MODEL 10266428 pseudo LOC106149283 small nuclear ribonucleoprotein F-like NW_004955442 6969621 6973305 - 106149283 AGCD01037608 MODEL 8762158 protein-coding Pafah2 platelet activating factor acetylhydrolase 2 ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); platelet-activating factor acetyltransferase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial membrane (ortholog) NW_004955452 5440766 5474483 - 102011169 AGCD01044033;AGCD01044034;AGCD01044035;AGCD01044036;GBDK01171480;XM_005394836 XP_005394893 MODEL 9057901 protein-coding Slc30a9 solute carrier family 30 member 9 ENCODES a protein that exhibits chromatin binding (ortholog); nuclear receptor binding (ortholog); transcription coactivator activity (ortholog); INVOLVED IN intracellular zinc ion homeostasis (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of mitochondrion organization (ortholog); ASSOCIATED WITH Birk-Landau-Perez Syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic vesicle (ortholog); cytoskeleton (ortholog); endoplasmic reticulum (ortholog) NW_004955443 5641372 5716188 - 102009766 AGCD01038243;GBDF01187667;XM_005391923 XP_005391980 MODEL 8820365 ncrna LOC102010095 uncharacterized LOC102010095 NW_004955440 18493660 18495295 + 102010095 AGCD01036610;GBDF01126738;XR_001235248 MODEL 8934762 protein-coding Xrcc3 X-ray repair cross complementing 3 ENCODES a protein that exhibits crossover junction DNA endonuclease activity (ortholog); four-way junction DNA binding (ortholog); INVOLVED IN DNA repair (ortholog); double-strand break repair via homologous recombination (ortholog); interstrand cross-link repair (ortholog); PARTICIPATES IN homologous recombination pathway of double-strand break repair; ASSOCIATED WITH basal cell carcinoma (ortholog); brain glioma (ortholog); breast cancer (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nuclear replication fork (ortholog) NW_004955538 2499297 2511898 - 102014168 AGCD01071127;AGCD01071128;GBDI01054433;XM_013507843;XM_013507844;XM_013507845;XM_013507846;XM_013507847;XM_013507848;XM_013507849;XM_013507850 XP_013363297;XP_013363298;XP_013363299;XP_013363300;XP_013363301;XP_013363302;XP_013363303;XP_013363304 MODEL 9052661 pseudo LOC102008949 tubulin alpha-1A chain-like NW_004955420 26771001 26771926 - 102008949 AGCD01021431 MODEL 8870579 protein-coding LOC102018514 L-xylulose reductase NW_004955506 1135924 1137671 + 102018514 AGCD01065246;GBDK01008359;XM_005407226 XP_005407283 MODEL 8925446 ncrna LOC102007414 uncharacterized LOC102007414 NW_004955410 36159193 36161406 - 102007414 AGCD01011421;GBDF01176606;XR_259905 MODEL 8835693 protein-coding Bltp3b bridge-like lipid transfer protein family member 3B ENCODES a protein that exhibits GARP complex binding (ortholog); lipid transfer activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN early endosome to Golgi transport (ortholog); intermembrane lipid transfer (ortholog); ASSOCIATED WITH systemic juvenile rheumatoid arthritis (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog) NW_004955405 35814803 35935553 - 102019020 AGCD01005402;AGCD01005403;AGCD01005404;AGCD01005405;GBDJ01165887;XM_013518586 XP_013374040 MODEL 8955361 pseudo LOC102018115 eukaryotic translation initiation factor 2 subunit 2 pseudogene NW_004955427 10286735 10287698 + 102018115 AGCD01027142 MODEL 8998256 ncrna LOC102020677 uncharacterized LOC102020677 NW_004955421 9556664 9717614 + 102020677 AGCD01021851;AGCD01021852;AGCD01021853;AGCD01021854;AGCD01021855;AGCD01021856;AGCD01021857;GBDF01187921;XR_260791 MODEL 10227140 ncrna LOC106146445 uncharacterized LOC106146445 NW_004955479 10014825 10041016 - 106146445 AGCD01056516;AGCD01056517;AGCD01056518;AGCD01056519;AGCD01056520;GBBH01138875;XR_001230878 MODEL 8831853 protein-coding Ift74 intraflagellar transport 74 ENCODES a protein that exhibits beta-tubulin binding (ortholog); chromatin binding (ortholog); INVOLVED IN cilium assembly (ortholog); determination of left/right symmetry (ortholog); epidermis development (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); autism spectrum disorder (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955472 7779705 7872423 - 102027292 AGCD01053629;AGCD01053630;AGCD01053631;AGCD01053632;AGCD01053633;GBDI01297180;XM_005401156 XP_005401213 MODEL 8770056 protein-coding LOC102027694 sulfotransferase family cytosolic 1B member 1 NW_004955447 3038623 3066464 + 102027694 AGCD01040573;AGCD01040574;GBDF01280395;XM_005392792 XP_005392849 MODEL 8760129 ncrna LOC102024176 uncharacterized LOC102024176 NW_004955448 1571760 1595646 + 102024176 AGCD01041261;AGCD01041262;GBDF01273897;XR_262454 MODEL 41410895 scarna SCARNA13 small Cajal body-specific RNA 13 8806345 protein-coding LOC102029417 olfactory receptor 8S1-like NW_004955500 7311312 7312247 - 102029417 AGCD01063913;XM_013505637 XP_013361091 MODEL 8997551 protein-coding Pip5kl1 phosphatidylinositol-4-phosphate 5-kinase like 1 ENCODES a protein that exhibits 1-phosphatidylinositol-4-phosphate 5-kinase activity (ortholog); INVOLVED IN negative regulation of cell migration (ortholog); negative regulation of mitochondrial membrane potential (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); FOUND IN cytosol (ortholog) NW_004955419 745400 753819 + 102021661 AGCD01019608;GBCE01103174;XM_005382394;XM_013513157;XM_013513158;XM_013513159;XM_013513160;XM_013513161 XP_005382451;XP_013368611;XP_013368612;XP_013368613;XP_013368614;XP_013368615 MODEL 8989048 protein-coding Spcs2 signal peptidase complex subunit 2 INVOLVED IN protein processing (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); signal peptidase complex (ortholog) NW_004955414 16807986 16825013 - 102005249 AGCD01015225;GBDI01004293;XM_005379911 XP_005379968 MODEL 8713794 pseudo LOC102003513 UDP-glucuronosyltransferase 1-8-like NW_004955453 2600059 2624326 - 102003513 AGCD01044634 MODEL 9052842 protein-coding Ndufb1 NADH:ubiquinone oxidoreductase subunit B1 FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955438 14443558 14449754 - 102013546 AGCD01035346;GBDF01084776;XM_005390443 XP_005390500 MODEL 8929653 protein-coding LOC102019674 translation initiation factor IF-2-like NW_004955410 9633405 9658285 - 102019674 AGCD01010768;AGCD01010769;AGCD01010770;GBDI01315759;XM_013510683;XM_013510684;XM_013510685;XM_013510686;XR_001232768;XR_001232769 XP_013366137;XP_013366138;XP_013366139;XP_013366140 MODEL 8881798 pseudo LOC102004558 U1 small nuclear ribonucleoprotein C-like NW_004955406 37620864 37621806 - 102004558 AGCD01006576 MODEL 39133438 snrna U4 U4 spliceosomal RNA 9051791 protein-coding LOC102006314 keratin-associated protein 20-2-like NW_004955407 30126888 30127076 + 102006314 AGCD01007628;XM_005375638 XP_005375695 MODEL 10066967 pseudo LOC106149284 protein FAM136A pseudogene NW_004955442 7665688 7666088 + 106149284 AGCD01037627 MODEL 10079546 ncrna LOC106146714 uncharacterized LOC106146714 NW_004955407 37693312 37713092 - 106146714 AGCD01007785;GBCQ01148687;XR_001231272 MODEL 9019225 ncrna LOC102003199 uncharacterized LOC102003199 NW_004955405 11281717 11443213 - 102003199 AGCD01004830;AGCD01004831;AGCD01004832;AGCD01004833;GBDJ01324103;XR_001235325;XR_001235327;XR_001235329 MODEL 8709611 ncrna LOC102027019 uncharacterized LOC102027019 NW_004955445 7961948 7972321 - 102027019 AGCD01039557;GBDK01005281;XR_001235604;XR_001235605;XR_001235606;XR_262314;XR_262316;XR_262317 MODEL 8699521 protein-coding Tex30 testis expressed 30 NW_004955404 8390635 8394761 + 102002987 AGCD01003352;GBDI01294125;GBDI01294139;XM_005374029 XP_005374086 MODEL 8884473 protein-coding Lcmt1 leucine carboxyl methyltransferase 1 ENCODES a protein that exhibits protein C-terminal carboxyl O-methyltransferase activity (ortholog); protein C-terminal leucine carboxyl O-methyltransferase activity (ortholog); protein methyltransferase activity (ortholog); INVOLVED IN C-terminal protein methylation (ortholog); negative regulation of protein-containing complex assembly (ortholog); protein methylation (ortholog); ASSOCIATED WITH Embryo Loss (ortholog); FOUND IN cytosol (ortholog) NW_004955493 3440832 3499658 + 102030433 AGCD01060997;AGCD01060998;AGCD01060999;GBDF01082047;XM_005405126;XM_005405127;XM_013504899 XP_005405183;XP_005405184;XP_013360353 MODEL 8918957 pseudo LOC102012481 uncharacterized LOC102012481 NW_004955446 7640915 7696303 + 102012481 AGCD01040126;AGCD01040127;AGCD01040128 MODEL 9046329 ncrna LOC102026678 uncharacterized LOC102026678 NW_004955550 1313125 1321581 + 102026678 AGCD01072560;AGCD01072561;GBDI01344565;XR_264917 MODEL 9047719 protein-coding Pole4 DNA polymerase epsilon 4, accessory subunit INVOLVED IN DNA-templated DNA replication (ortholog); PARTICIPATES IN nucleotide excision repair pathway; FOUND IN ATAC complex (ortholog); epsilon DNA polymerase complex (ortholog); nucleoplasm (ortholog) NW_004955424 10839639 10844985 - 102018742 AGCD01024531;GBDI01113587;XM_005385473 XP_005385530 MODEL 9045231 pseudo LOC102012050 protein regulator of cytokinesis 1-like NW_004955451 11417605 11442353 + 102012050 AGCD01043354 MODEL 8786628 protein-coding LOC102021461 tubulin alpha-1C chain-like NW_004955499 193636 205355 + 102021461 AGCD01063193;AGCD01063194;AGCD01063195;AGCD01063196;AGCD01063197;XM_013505550 XP_013361004 MODEL 8964373 protein-coding LOC102023873 uncharacterized LOC102023873 NW_004955454 2526267 2531589 - 102023873 AGCD01045022;GBDF01241248;XM_013520106;XM_013520107 XP_013375560;XP_013375561 MODEL 8729546 protein-coding Kpna2 karyopherin subunit alpha 2 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); histone deacetylase binding (ortholog); nuclear import signal receptor activity (ortholog); INVOLVED IN entry of viral genome into host nucleus through nuclear pore complex via importin (ortholog); NLS-bearing protein import into nucleus (ortholog); positive regulation of type I interferon production (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955478 7121432 7134327 + 102012092 AGCD01055945;AGCD01055946;AGCD01055947;GBDF01005307;XM_005402159 XP_005402216 MODEL 8923205 ncrna LOC102003516 uncharacterized LOC102003516 NW_004955456 14326450 14331839 - 102003516 AGCD01046639;GBBH01024435;XR_001236348;XR_262903 MODEL 8986245 protein-coding Ndufb10 NADH:ubiquinone oxidoreductase subunit B10 ASSOCIATED WITH mitochondrial complex I deficiency (ortholog); nuclear type mitochondrial complex I deficiency 35 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955442 15306688 15309281 - 102013454 AGCD01037865;GBDK01080205;XM_005391494 XP_005391551 MODEL 8974223 protein-coding Tnfaip3 TNF alpha induced protein 3 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); identical protein binding (ortholog); K63-linked deubiquitinase activity (ortholog); INVOLVED IN B-1 B cell homeostasis (ortholog); cellular response to hydrogen peroxide (ortholog); cellular response to lipopolysaccharide (ortholog); PARTICIPATES IN nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH autoimmune disease (ortholog); breast cancer (ortholog); cholangiocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955436 21566591 21581551 - 102018764 AGCD01034056;GBBH01102942;XM_005389278;XM_013516683;XM_013516684 XP_005389335;XP_013372137;XP_013372138 MODEL 8883817 ncrna LOC102009295 uncharacterized LOC102009295 NW_004955424 20161293 20182303 - 102009295 AGCD01024845;GBDF01236664;XR_261089 MODEL 8769837 pseudo LOC102018117 GTPase RhebL1 pseudogene NW_004955428 18782844 18783372 + 102018117 AGCD01028071 MODEL 39132937 snorna SNORD35A small nucleolar RNA, C/D box 35A 8978980 protein-coding LOC102028348 leukocyte immunoglobulin-like receptor subfamily A member 6 NW_004955567 1924685 1928195 + 102028348 AGCD01074497;GBBH01115402;GBDJ01337490;XM_013509326 XP_013364780 MODEL 10233269 protein-coding LOC106146571 uncharacterized LOC106146571 NW_004955485 9683382 9698923 + 106146571 AGCD01058779;GBDI01363517;XM_013504024 XP_013359478 MODEL 8824098 protein-coding Blvra biliverdin reductase A ENCODES a protein that exhibits biliberdin reductase (NADH) activity (ortholog); biliverdin reductase (NADPH) activity (ortholog); biliverdin reductase [NAD(P)H] activity (ortholog); INVOLVED IN apoptotic DNA fragmentation (ortholog); canonical NF-kappaB signal transduction (ortholog); chemotaxis (ortholog); PARTICIPATES IN acute intermittent porphyria pathway; erythropoietic porphyria pathway; hereditary coproporphyria pathway; ASSOCIATED WITH cholestasis (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955460 129077 167345 - 102010875 AGCD01048335;AGCD01048336;AGCD01048337;GBDI01175001;XM_005397710 XP_005397767 MODEL 8880204 pseudo LOC102030128 ATP synthase subunit g, mitochondrial pseudogene NW_004955442 14113416 14113843 - 102030128 AGCD01037801;XM_005391360 MODEL 8822282 protein-coding LOC102027695 PNMA-like protein 1 NW_004955574 624881 629072 - 102027695 AGCD01075116;GBDI01287814;XM_005413835 XP_005413892 MODEL 8776416 pseudo LOC102015454 U6 snRNA-associated Sm-like protein LSm3 pseudogene NW_004955440 3420455 3423022 - 102015454 AGCD01036242 MODEL 10115470 protein-coding LOC106146327 collagen alpha-1(I) chain-like NW_004955500 7182576 7209266 - 106146327 AGCD01063906;AGCD01063907;AGCD01063908;AGCD01063909;GBDK01431918;XM_013505635 XP_013361089 MODEL 405822143 scarna SCARNA14 small Cajal body-specific RNA 14 8990424 protein-coding LOC102025276 olfactory receptor 4C15-like NW_004955511 248515 251927 + 102025276 AGCD01066325;XM_013506350 XP_013361804 MODEL 8845759 protein-coding LOC102012483 olfactory receptor 2B2-like NW_004955576 1406995 1407939 + 102012483 AGCD01075375;XM_005413956 XP_005414013 MODEL 10280182 ncrna LOC106148091 uncharacterized LOC106148091 NW_004955415 24980255 25018085 - 106148091 AGCD01016580;XR_001233225 MODEL 10235856 pseudo LOC106150107 gamma-secretase subunit APH-1A pseudogene NW_004955465 10400655 10402220 - 106150107 AGCD01050508 MODEL 8814575 protein-coding Srgap1 SLIT-ROBO Rho GTPase activating protein 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN cell migration (ortholog); Rho protein signal transduction (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Brain Hypoxia-Ischemia (ortholog); congenital anomalies of kidney and urinary tract (ortholog) NW_004955458 10842745 10991500 + 102019672 AGCD01047707;AGCD01047708;AGCD01047709;AGCD01047710;AGCD01047711;GBDK01433747;XM_013520989;XM_013520990 XP_013376443;XP_013376444 MODEL 8836628 protein-coding Errfi1 ERBB receptor feedback inhibitor 1 ENCODES a protein that exhibits kinase binding (ortholog); protein kinase binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN apoptotic process (ortholog); bile acid biosynthetic process (ortholog); cartilage development (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); Diabetic Nephropathies (ortholog); endometrial cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955486 4941143 4955693 + 102030200 AGCD01059072;AGCD01059073;GBCE01052630;XM_005404060 XP_005404117 MODEL 8720376 protein-coding LOC102005953 olfactory receptor 5B2-like NW_004955511 3211089 3212036 - 102005953 AGCD01066450;XM_013506385 XP_013361839 MODEL 8786955 ncrna LOC102006319 uncharacterized LOC102006319 NW_004955460 7406510 7414067 - 102006319 AGCD01048481;XR_263037 MODEL 8910354 ncrna LOC102008951 uncharacterized LOC102008951 NW_004955420 29155972 29159064 - 102008951 AGCD01021493;GBCB01016080;XR_260771 MODEL 8888219 protein-coding Phc3 polyhomeotic homolog 3 PARTICIPATES IN histone modification pathway; FOUND IN nucleoplasm (ortholog); nucleus (ortholog); PcG protein complex (ortholog) NW_004955420 329215 403191 - 102016814 AGCD01020540;AGCD01020541;AGCD01020542;GBDI01054007;XM_005382964;XM_005382969;XM_013513437;XM_013513438;XM_013513439 XP_005383021;XP_005383026;XP_013368891;XP_013368892;XP_013368893 MODEL 8906059 ncrna LOC102025616 uncharacterized LOC102025616 NW_004955528 1457709 1458898 + 102025616 AGCD01069564;GBDF01277332;XR_264685 MODEL 10267258 ncrna LOC106146446 uncharacterized LOC106146446 NW_004955479 3041356 3065441 - 106146446 AGCD01056289;AGCD01056290;GBDF01266884;XR_001230880 MODEL 10278191 ncrna LOC106146999 uncharacterized LOC106146999 NW_004955511 5761499 5764505 - 106146999 AGCD01066580;GBDF01055009;XR_001231694 MODEL 8842784 protein-coding Kpna3 karyopherin subunit alpha 3 ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 88 (ortholog); FOUND IN NLS-dependent protein nuclear import complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955431 3147679 3176577 - 102027326 AGCD01029950;AGCD01029951;AGCD01029952;GBCB01006645;GBCQ01127481;XM_005387599 XP_005387656 MODEL 8783810 protein-coding Ndufb11 NADH:ubiquinone oxidoreductase subunit B11 ASSOCIATED WITH genetic disease (ortholog); infantile histiocytoid cardiomyopathy (ortholog); linear skin defects with multiple congenital anomalies 1 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955516 934740 937207 + 102022320 AGCD01067406;GBDJ01023277;XM_005408963 XP_005409020 MODEL 8758599 ncrna LOC102024177 uncharacterized LOC102024177 NW_004955448 8662974 8691442 - 102024177 AGCD01041450;GBDF01020951;XR_262465 MODEL 8735940 protein-coding Tex35 testis expressed 35 FOUND IN microtubule cytoskeleton (ortholog); nucleus (ortholog) NW_004955406 17930460 17946364 + 102024085 AGCD01006016;GBDF01207826;XM_005374931;XM_005374933;XM_005374934;XM_013521079;XM_013521082;XR_001236493 XP_005374988;XP_005374990;XP_005374991;XP_013376533;XP_013376536 MODEL 8801184 pseudo LOC102008958 AN1-type zinc finger protein 3-like NW_004955497 478857 481296 + 102008958 AGCD01062416 MODEL 39133439 snrna U4 U4 spliceosomal RNA 626189186 scarna SCARNA15 small Cajal body-specific RNA 15 8767798 protein-coding Pipox pipecolic acid and sarcosine oxidase ENCODES a protein that exhibits L-pipecolate oxidase activity (ortholog); sarcosine oxidase activity (ortholog); INVOLVED IN L-lysine catabolic process (ortholog); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; glutaric aciduria type I pathway; hyperlysinemia pathway; ASSOCIATED WITH peroxisomal disease (ortholog); FOUND IN peroxisomal matrix (ortholog); peroxisome (ortholog) NW_004955481 4128503 4225027 - 102015954 AGCD01056931;AGCD01056932;GBDI01245274;XM_005402697;XM_013503421;XM_013503422 XP_005402754;XP_013358875;XP_013358876 MODEL 10303266 ncrna LOC106146328 uncharacterized LOC106146328 NW_004955402 1189724 1192135 + 106146328 AGCD01000051;GBDK01199986;XR_259011 MODEL 8915624 pseudo LOC102019680 anaphase-promoting complex subunit 10 pseudogene NW_004955411 24699208 24699455 - 102019680 AGCD01012136 MODEL 8997274 protein-coding LOC102010097 keratin, type II cytoskeletal 6A-like NW_004955547 2793016 2797170 - 102010097 AGCD01072294;XM_013508500 XP_013363954 MODEL 8917995 protein-coding LOC102004559 chromosome unknown open reading frame, human C12orf43 ASSOCIATED WITH type 2 diabetes mellitus (ortholog); FOUND IN nucleolus (ortholog) NW_004955455 10684757 10693511 + 102004559 AGCD01045961;GBDF01224343;XM_005396486;XM_005396487;XM_005396488;XM_005396489 XP_005396543;XP_005396544;XP_005396545;XP_005396546 MODEL 8795866 pseudo LOC102020678 transketolase-like protein 1 pseudogene NW_004955489 587089 589357 + 102020678 AGCD01059810 MODEL 8803725 ncrna LOC102018521 uncharacterized LOC102018521 NW_004955515 3179303 3190163 + 102018521 AGCD01067274;GBDI01275277;XR_264522;XR_264523 MODEL 8778667 ncrna LOC102023874 uncharacterized LOC102023874 NW_004955456 796593 798267 + 102023874 AGCD01046216;GBCQ01020310;XR_262867 MODEL 9049138 protein-coding Xrcc4 X-ray repair cross complementing 4 ENCODES a protein that exhibits 3' overhang single-stranded DNA endonuclease activity (ortholog); DNA binding (ortholog); enzyme activator activity (ortholog); INVOLVED IN base-excision repair (ortholog); cellular response to lithium ion (ortholog); central nervous system development (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH Chromosome Aberrations (ortholog); genetic disease (ortholog); isolated growth hormone deficiency type IA (ortholog); FOUND IN chromosome (ortholog); chromosome, telomeric region (ortholog); condensed chromosome (ortholog) NW_004955418 27174510 27426245 - 102010162 AGCD01019404;AGCD01019405;AGCD01019406;AGCD01019407;AGCD01019408;GBCE01069514;XM_005382305;XM_005382306 XP_005382362;XP_005382363 MODEL 10245652 ncrna LOC106146715 uncharacterized LOC106146715 NW_004955407 37864156 37870776 + 106146715 AGCD01007786;GBBH01223787;XR_001231275 MODEL 8724084 protein-coding Siah2 siah E3 ubiquitin protein ligase 2 ENCODES a protein that exhibits ubiquitin conjugating enzyme binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN canonical Wnt signaling pathway (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN estrogen signaling pathway; nuclear factor, erythroid 2 like 2 signaling pathway; ASSOCIATED WITH lens disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955448 1907478 1926445 - 102018449 AGCD01041271;GBDJ01180931;GBDK01196937;XM_013518651 XP_013374105 MODEL 8801136 protein-coding LOC102007418 olfactory receptor 143-like NW_004955412 25270890 25271828 + 102007418 AGCD01013143;XM_005378419 XP_005378476 MODEL 8889531 protein-coding Ift80 intraflagellar transport 80 INVOLVED IN apoptotic process (ortholog); articular cartilage development (ortholog); bone development (ortholog); ASSOCIATED WITH Asphyxia (ortholog); asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 2 (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955448 10808940 10819655 - 102003296 AGCD01041503;GBCB01121051;XM_013518599 XP_013374053 MODEL 9041553 ncrna LOC102003205 uncharacterized LOC102003205 NW_004955454 12305249 12309122 - 102003205 AGCD01045408;XR_262790 MODEL 39132938 snorna SNORD35B small nucleolar RNA, C/D box 35B 8808849 protein-coding Lcmt2 leucine carboxyl methyltransferase 2 NW_004955416 9890208 9892326 - 102004810 AGCD01017099;GBDJ01334253;XM_005381378 XP_005381435 MODEL 8955058 protein-coding LOC102029419 cell surface glycoprotein CD200 receptor 2-like NW_004955427 13106554 13188670 - 102029419 AGCD01027233;AGCD01027234;AGCD01027235;AGCD01027236;AGCD01027237;AGCD01027238;AGCD01027239;AGCD01027240;GBDI01163823;GBDK01170416;XM_013515163 XP_013370617 MODEL 8927610 protein-coding Spcs3 signal peptidase complex subunit 3 INVOLVED IN protein processing (ortholog); proteolysis (ortholog); viral protein processing (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); signal peptidase complex (ortholog) NW_004955403 31451426 31461032 - 102016549 AGCD01002417;GBBH01064568;GBCQ01093575;XM_005373515 XP_005373572 MODEL 9039484 protein-coding Pag1 phosphoprotein membrane anchor with glycosphingolipid microdomains 1 ENCODES a protein that exhibits SH2 domain binding (ortholog); INVOLVED IN intracellular signal transduction (ortholog); negative regulation of T cell activation (ortholog); regulation of T cell activation (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); schizophrenia (ortholog); FOUND IN membrane raft (ortholog); plasma membrane (ortholog) NW_004955444 487028 636440 + 102008672 AGCD01038674;AGCD01038675;AGCD01038676;AGCD01038677;AGCD01038678;AGCD01038679;AGCD01038680;GBDK01282473;XM_005392057;XM_005392058;XM_013518187;XR_001235521 XP_005392114;XP_005392115;XP_013373641 MODEL 9057631 ncrna LOC102026684 uncharacterized LOC102026684 NW_004955567 1498410 1499461 + 102026684 AGCD01074476;GBDK01433316;XR_001232413 MODEL 8950497 protein-coding LOC102027698 olfactory receptor 2T6-like NW_004955581 938962 940210 - 102027698 AGCD01075705;GBBH01156700;XM_013509746 XP_013365200 MODEL 8867241 ncrna LOC102012054 uncharacterized LOC102012054 NW_004955405 38958635 38968152 + 102012054 AGCD01005493;GBDK01428567;XR_259444 MODEL 8876151 pseudo LOC102030129 rab-3A-interacting protein-like NW_004955558 537601 538182 + 102030129 AGCD01073376 MODEL 9013716 protein-coding Slc31a1 solute carrier family 31 member 1 ENCODES a protein that exhibits copper ion binding (ortholog); copper ion transmembrane transporter activity (ortholog); identical protein binding (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to cisplatin (ortholog); copper ion import (ortholog); PARTICIPATES IN cisplatin drug pathway; cisplatin response pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Congenital Abnormalities (ortholog); Embryo Loss (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); early endosome membrane (ortholog) NW_004955419 14221258 14264288 - 102027189 AGCD01020015;GBDJ01239578;XM_005382690 XP_005382747 MODEL 8834238 protein-coding Polg DNA polymerase gamma, catalytic subunit ENCODES a protein that exhibits 3'-5' exonuclease activity (ortholog); 5'-deoxyribose-5-phosphate lyase activity (ortholog); chromatin binding (ortholog); INVOLVED IN base-excision repair (ortholog); base-excision repair, gap-filling (ortholog); cellular response to glucose stimulus (ortholog); ASSOCIATED WITH Alpers-Huttenlocher syndrome (ortholog); asphyxiating thoracic dystrophy 3 (ortholog); Ataxia (ortholog); FOUND IN gamma DNA polymerase complex (ortholog); mitochondrial chromosome (ortholog); mitochondrial matrix (ortholog) NW_004955416 15773005 15788736 + 102003340 AGCD01017343;GBDI01169870;XM_005381556 XP_005381613 MODEL 9004875 protein-coding LOC102015455 olfactory receptor 13A1-like NW_004955546 2382212 2436072 + 102015455 AGCD01072089;AGCD01072090;AGCD01072091;AGCD01072092;XM_005411790;XM_013508369 XP_005411847;XP_013363823 MODEL 8915487 pseudo LOC102012486 histone H3.1-like NW_004955581 100297 101951 + 102012486 AGCD01075657 MODEL 10269093 protein-coding LOC106149285 uncharacterized LOC106149285 NW_004955442 9191562 9196920 - 106149285 AGCD01037668;AGCD01037669;GBDF01078097;XM_013517648 XP_013373102 MODEL 39133440 snrna U4 U4 spliceosomal RNA 8971349 protein-coding LOC102027021 zinc finger protein 709-like NW_004955569 224662 244117 + 102027021 AGCD01074566;AGCD01074567;AGCD01074568;AGCD01074569;XM_013509356 XP_013364810 MODEL 8810238 protein-coding Esco1 establishment of sister chromatid cohesion N-acetyltransferase 1 ENCODES a protein that exhibits acetyltransferase activity (ortholog); identical protein binding (ortholog); N-acetyltransferase activity (ortholog); INVOLVED IN peptidyl-lysine acetylation (ortholog); post-translational protein acetylation (ortholog); regulation of DNA replication (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); nucleus (ortholog) NW_004955402 10207621 10257363 - 102027027 AGCD01000252;AGCD01000253;AGCD01000254;GBCQ01174846;XM_013520167;XM_013520204;XM_013520246;XR_001236265;XR_001236273;XR_001236282 XP_013375621;XP_013375658;XP_013375700 MODEL 8959460 protein-coding Trpv4 transient receptor potential cation channel subfamily V member 4 ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); alpha-tubulin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament organization (ortholog); ATP export (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 5 (ortholog); Auditory Neuropathy (ortholog); autosomal dominant distal hereditary motor neuronopathy (ortholog); FOUND IN adherens junction (ortholog); apical plasma membrane (ortholog); cell surface (ortholog) NW_004955455 8744865 8781644 + 102018566 AGCD01045908;AGCD01045909;GBCQ01123903;XM_005396446;XM_005396447;XM_013520488 XP_005396503;XP_005396504;XP_013375942 MODEL 8969859 pseudo LOC102028351 serine/threonine-protein kinase Nek9 pseudogene NW_004955571 1526440 1534815 - 102028351 AGCD01074878;AGCD01074879 MODEL 8896787 ncrna LOC102025618 uncharacterized LOC102025618 NW_004955533 2054661 2078918 - 102025618 AGCD01070384;GBDF01253522;XR_001232043 MODEL 8869370 protein-coding LOC102006320 TERF1-interacting nuclear factor 2 NW_004955409 36120339 36165515 + 102006320 AGCD01010445;AGCD01010446;AGCD01010447;AGCD01010448;AGCD01010449;AGCD01010450;GBDF01003589;XM_005377026;XM_005377027;XM_013510401 XP_005377083;XP_005377084;XP_013365855 MODEL 8738533 protein-coding Blvrb biliverdin reductase B ENCODES a protein that exhibits biliverdin reductase [NAD(P)H] activity (ortholog); FMN reductase (NADH) activity (ortholog); FMN reductase (NADPH) activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); bone marrow development (ortholog); cell fate specification (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); esophagus squamous cell carcinoma (ortholog); Stomach Neoplasms (ortholog); FOUND IN terminal bouton; cytoplasm (ortholog); cytosol (ortholog) NW_004955578 813834 834675 + 102012040 AGCD01075498;GBCE01001251;XM_005414044 XP_005414101 MODEL 8896772 protein-coding LOC102024178 uncharacterized LOC102024178 NW_004955584 208498 209484 - 102024178 AGCD01075926;GBDF01224162;XM_005414409 XP_005414466 MODEL 8738183 protein-coding Ndufb2 NADH:ubiquinone oxidoreductase subunit B2 FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955494 2723740 2731054 - 102020259 AGCD01061448;GBDF01049094;XM_005405420;XM_005405421 XP_005405477;XP_005405478 MODEL 8997546 pseudo LOC102021462 translocation protein SEC62 pseudogene NW_004955425 16717873 16720163 - 102021462 AGCD01025619;XM_005386094 MODEL 10367368 protein-coding LOC106150108 collagen alpha-1(VIII) chain-like NW_004955465 3546577 3559365 - 106150108 AGCD01050381;AGCD01050382;GBDF01292680;XM_013521773 XP_013377227 MODEL 8910045 pseudo LOC102026685 thioredoxin pseudogene NW_004955569 197487 204660 + 102026685 AGCD01074566 MODEL 8914120 protein-coding LOC102012056 basic proline-rich protein-like NW_004955406 37370333 37389779 + 102012056 AGCD01006576;GBDF01003978;XM_005375168;XR_001236862 XP_005375225 MODEL 8768936 pseudo LOC102005954 ZZ-type zinc finger-containing protein 3 pseudogene NW_004955430 8912029 8917478 - 102005954 AGCD01029398 MODEL 10250021 protein-coding LOC106146329 glutathione S-transferase Mu 6-like NW_004955435 13182019 13184185 + 106146329 AGCD01033195;GBCB01004303;GBDJ01017879;XM_013516463 XP_013371917 MODEL 8801097 protein-coding Tnfaip6 TNF alpha induced protein 6 ENCODES a protein that exhibits calcium ion binding (ortholog); carboxylesterase activity (ortholog); fibronectin binding (ortholog); INVOLVED IN fibronectin fibril organization (ortholog); hyaluronan metabolic process (ortholog); negative regulation of BMP signaling pathway (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); allergic contact dermatitis (ortholog); Arsenic Poisoning (ortholog); FOUND IN extracellular region (ortholog) NW_004955440 16915952 16944375 + 102005185 AGCD01036545;AGCD01036546;AGCD01036547;AGCD01036548;AGCD01036549;AGCD01036550;GBBH01138981;GBDI01105873;XM_013517506 XP_013372960 MODEL 8999022 pseudo LOC102020679 solute carrier family 25 member 51-like NW_004955492 4358752 4359654 - 102020679 AGCD01060716 MODEL 8935044 protein-coding LOC102027022 uncharacterized LOC102027022 NW_004955445 8022171 8024206 + 102027022 AGCD01039557;GBDF01026394;XM_013518239 XP_013373693 MODEL 8958675 ncrna LOC102018523 uncharacterized LOC102018523 NW_004955434 172998 207712 + 102018523 AGCD01031998;AGCD01031999;AGCD01032000;GBCQ01181420;XR_001234825;XR_001234826;XR_261605 MODEL 10214936 protein-coding LOC106146716 uncharacterized LOC106146716 NW_004955493 6638457 6664594 + 106146716 AGCD01061122;AGCD01061123;AGCD01061124;AGCD01061125;AGCD01061126;GBDF01289046;XM_013504814;XM_013504815 XP_013360268;XP_013360269 MODEL 10086764 ncrna LOC106146447 uncharacterized LOC106146447 NW_004955479 9313853 9315466 - 106146447 AGCD01056458;GBDF01304625;XR_001230882 MODEL 10085685 ncrna LOC106147000 uncharacterized LOC106147000 NW_004955407 26960613 26967331 + 106147000 AGCD01007541;XR_001231695 MODEL 10270016 pseudo LOC106148092 60S ribosomal protein L21 pseudogene NW_004955415 14433647 14434170 + 106148092 AGCD01016298 MODEL 8936237 protein-coding Tex36 testis expressed 36 NW_004955477 3562667 3579915 - 102007762 AGCD01055556;AGCD01055557;GBDF01083461;XM_005401991 XP_005402048 MODEL 8891848 ncrna LOC102028352 uncharacterized LOC102028352 NW_004955446 16025671 16027341 + 102028352 AGCD01040313;GBDF01115203;XR_262401 MODEL 8876729 pseudo LOC102019686 olfactory receptor 51A7-like NW_004955414 20498737 20499672 - 102019686 AGCD01015376;XR_260184 MODEL 9003178 protein-coding Srgap2 SLIT-ROBO Rho GTPase activating protein 2 ENCODES a protein that exhibits GTPase activator activity (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN actin filament severing (ortholog); dendritic spine development (ortholog); excitatory synapse assembly (ortholog); ASSOCIATED WITH intellectual disability (ortholog); myoclonic-atonic epilepsy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dendritic spine (ortholog) NW_004955406 41801235 42050731 + 102017302 AGCD01006692;AGCD01006693;AGCD01006694;AGCD01006695;AGCD01006696;GBDF01159814;XM_005375386 XP_005375443 MODEL 9032987 ncrna LOC102010099 uncharacterized LOC102010099 NW_004955558 861760 862614 + 102010099 AGCD01073396;GBDJ01283073;XR_001232330 MODEL 9063163 protein-coding Pir pirin ENCODES a protein that exhibits metal ion binding (ortholog); quercetin 2,3-dioxygenase activity (ortholog); transcription coregulator activity (ortholog); INVOLVED IN monocyte differentiation (ortholog); myeloid cell differentiation (ortholog); ASSOCIATED WITH cholangiocarcinoma (ortholog); contact dermatitis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955519 2698207 2813201 + 102016304 AGCD01067938;AGCD01067939;AGCD01067940;AGCD01067941;AGCD01067942;GBCB01087098;XM_005409167;XM_013507011;XM_013507012;XM_013507013 XP_005409224;XP_013362465;XP_013362466;XP_013362467 MODEL 8777260 pseudo LOC102023877 mortality factor 4-like protein 1 pseudogene NW_004955457 11471032 11474512 + 102023877 AGCD01046970 MODEL 10338041 pseudo LOC106149286 FERM domain-containing protein 3-like NW_004955442 14016106 14022711 - 106149286 AGCD01037800;AGCD01037801 MODEL 8733104 protein-coding Siah3 siah E3 ubiquitin protein ligase family member 3 INVOLVED IN negative regulation of protein localization to mitochondrion (ortholog); regulation of protein stability (ortholog); FOUND IN mitochondrion (ortholog) NW_004955518 3473120 3539086 - 102016738 AGCD01067804;AGCD01067805;GBDF01111139;XM_005409091;XM_013506955;XR_001231838 XP_005409148;XP_013362409 MODEL 9050315 protein-coding LOC102007420 cytochrome P450 2D16-like NW_004955413 27581708 27585916 - 102007420 AGCD01014517;GBCQ01010821;XM_005379405 XP_005379462 MODEL 39131380 protein-coding IFT80 intraflagellar transport 80 8729907 protein-coding Xrcc5 X-ray repair cross complementing 5 ENCODES a protein that exhibits 5'-deoxyribose-5-phosphate lyase activity (ortholog); ATP hydrolysis activity (ortholog); ATP-dependent activity, acting on DNA (ortholog); INVOLVED IN activation of innate immune response (ortholog); cell population proliferation (ortholog); cellular hyperosmotic salinity response (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH Animal Disease Models (ortholog); basal cell carcinoma (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN chromosome (ortholog); chromosome, telomeric region (ortholog); cytoplasm (ortholog) NW_004955453 16967453 17054634 - 102024526 AGCD01044916;AGCD01044917;GBCB01075567;XM_005395688;XM_005395689 XP_005395745;XP_005395746 MODEL 8927319 ncrna LOC102008960 uncharacterized LOC102008960 NW_004955500 4757497 4758238 - 102008960 AGCD01063810;XR_264224 MODEL 8872437 protein-coding Kpna4 karyopherin subunit alpha 4 ENCODES a protein that exhibits nuclear import signal receptor activity (ortholog); nuclear localization sequence binding (ortholog); INVOLVED IN NLS-bearing protein import into nucleus (ortholog); protein import into nucleus (ortholog); response to hydrogen peroxide (ortholog); FOUND IN cytoplasm (ortholog); NLS-dependent protein nuclear import complex (ortholog); nucleoplasm (ortholog) NW_004955448 11025095 11094053 - 102022982 AGCD01041510;AGCD01041511;AGCD01041512;AGCD01041513;GBBH01164753;GBCB01006548;XM_013518601 XP_013374055 MODEL 39131479 protein-coding LCMT2 leucine carboxyl methyltransferase 2 9019130 ncrna LOC102025619 uncharacterized LOC102025619 NW_004955437 18872070 18935975 - 102025619 AGCD01034816;AGCD01034817;AGCD01034818;AGCD01034819;GBDJ01095672;XR_261894 MODEL 8975249 ncrna LOC102003519 uncharacterized LOC102003519 NW_004955459 3020453 3021512 - 102003519 AGCD01048006;GBDF01017116;XR_263011 MODEL 8927285 ncrna LOC102006322 uncharacterized LOC102006322 NW_004955463 8147644 8156564 - 102006322 AGCD01049756;GBDF01286788;XR_263161 MODEL 8835147 protein-coding Trpv6 transient receptor potential cation channel subfamily V member 6 ENCODES a protein that exhibits calcium channel activity (ortholog); calmodulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN calcium ion homeostasis (ortholog); calcium ion import (ortholog); calcium ion import across plasma membrane (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH genetic disease (ortholog); gestational diabetes (ortholog); hyperparathyroidism (ortholog); FOUND IN calcium channel complex (ortholog); plasma membrane (ortholog) NW_004955494 820801 835931 - 102004942 AGCD01061385;AGCD01061386;GBCE01039170;XM_005405387 XP_005405444 MODEL 8725641 pseudo LOC102018118 protein S100-A10 pseudogene NW_004955507 5694303 5694594 + 102018118 AGCD01065684 MODEL 8747432 pseudo LOC102004564 abl interactor 1 pseudogene NW_004955407 18718421 18719424 + 102004564 AGCD01007275 MODEL 8740219 protein-coding LOC102030135 UDP-glucuronosyltransferase 2B15-like NW_004955447 4290932 4300807 + 102030135 AGCD01040712;XM_005392800 XP_005392857 MODEL 8721807 ncrna LOC102012487 uncharacterized LOC102012487 NW_004955449 15407328 15451351 + 102012487 AGCD01042194;XR_262507 MODEL 8858931 pseudo LOC102024180 protein DBF4 homolog A pseudogene NW_004955612 134262 137323 + 102024180 AGCD01077180 MODEL 8709056 protein-coding Pheta1 PH domain containing endocytic trafficking adaptor 1 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN endosome organization (ortholog); receptor recycling (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); FOUND IN clathrin-coated vesicle (ortholog); early endosome (ortholog); recycling endosome (ortholog) NW_004955482 8052534 8058004 - 102005711 AGCD01057499;AGCD01057500;GBBH01207880;GBCE01030281;XM_013503647 XP_013359101 MODEL 8744578 protein-coding Polg2 DNA polymerase gamma 2, accessory subunit ENCODES a protein that exhibits DNA polymerase binding (ortholog); DNA polymerase processivity factor activity (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN DNA-templated DNA replication (ortholog); in utero embryonic development (ortholog); mitochondrial DNA metabolic process (ortholog); ASSOCIATED WITH autosomal dominant progressive external ophthalmoplegia with mitochondrial DNA deletions 4 (ortholog); Experimental Diabetes Mellitus (ortholog); mitochondrial DNA depletion syndrome 16 (ortholog); FOUND IN gamma DNA polymerase complex (ortholog); mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog) NW_004955478 7376240 7396647 + 102027847 AGCD01055959;AGCD01055960;GBBH01117427;GBDI01128987;XM_013503174;XM_013503175 XP_013358628;XP_013358629 MODEL 10118224 protein-coding LOC106146572 basic proline-rich protein-like NW_004955485 8140633 8141212 + 106146572 AGCD01058692;GBCB01098261;XM_013504026 XP_013359480 MODEL 39133441 snrna U4 U4 spliceosomal RNA 8810339 pseudo LOC102003206 cysteine and histidine-rich domain-containing protein 1-like NW_004955407 13581947 13582930 - 102003206 AGCD01007151 MODEL 10227367 protein-coding LOC106150109 vegetative cell wall protein gp1-like NW_004955465 3912130 3915205 - 106150109 AGCD01050399;XM_013521774 XP_013377228 MODEL 8968503 ncrna LOC102026688 uncharacterized LOC102026688 NW_004955447 14492579 14495740 + 102026688 AGCD01041006;GBDJ01165833;XR_262431 MODEL 39134228 snorna SNORD36 Small nucleolar RNA SNORD36 9053634 pseudo LOC102020680 aminoacyl tRNA synthase complex-interacting multifunctional protein 1 pseudogene NW_004955492 7170614 7171540 + 102020680 AGCD01060778 MODEL 8875183 protein-coding LOC102029420 uncharacterized LOC102029420 NW_004955505 3904775 3941716 - 102029420 AGCD01065069;AGCD01065070;AGCD01065071;AGCD01065072;AGCD01065073;GBDJ01281158;XM_013505921 XP_013361375 MODEL 8837464 protein-coding Esco2 establishment of sister chromatid cohesion N-acetyltransferase 2 ENCODES a protein that exhibits acetyltransferase activity (ortholog); L-lysine N6-acetyltransferase activity, acting on acetyl phosphate as donor (ortholog); protein-lysine-acetyltransferase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); double-strand break repair (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); Juberg-Hayward Syndrome (ortholog); FOUND IN chromatin (ortholog); chromocenter (ortholog); chromosome (ortholog) NW_004955403 50306726 50328015 + 102008172 AGCD01002964;AGCD01002965;GBDF01190888;XM_005373754;XM_013514290 XP_005373811;XP_013369744 MODEL 8814550 pseudo LOC102018525 transcription factor BTF3 pseudogene NW_004955435 12032177 12032814 - 102018525 AGCD01033133 MODEL 616940615 scarna SCARNA16 small Cajal body-specific RNA 16 8765153 protein-coding Spdef SAM pointed domain containing ETS transcription factor ENCODES a protein that exhibits sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN intestinal epithelial cell development (ortholog); lung goblet cell differentiation (ortholog); negative regulation of cell fate commitment (ortholog); ASSOCIATED WITH ovarian cancer (ortholog); Ovarian Neoplasms (ortholog); FOUND IN nucleus (ortholog) NW_004955437 2667499 2679940 - 102017812 AGCD01034284;GBDJ01272719;XM_005389528;XM_013517102 XP_005389585;XP_013372556 MODEL 10359240 protein-coding Pagr1 PAXIP1 associated glutamate rich protein 1 ENCODES a protein that exhibits nuclear estrogen receptor binding (ortholog); INVOLVED IN chorion development (ortholog); DNA damage response (ortholog); positive regulation of cell cycle G1/S phase transition (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH dilated cardiomyopathy (ortholog); esophagus squamous cell carcinoma (ortholog); lung metastasis (ortholog); FOUND IN histone methyltransferase complex (ortholog); MLL3/4 complex (ortholog); nucleus (ortholog) NW_004955493 7142048 7144836 - 106146246 AGCD01061156;GBDK01010121;XM_005405243 XP_005405300 MODEL 8792406 pseudo LOC102009303 39S ribosomal protein L28, mitochondrial pseudogene NW_004955428 16029765 16030480 - 102009303 AGCD01028014 MODEL 8926338 protein-coding LOC102015457 uncharacterized LOC102015457 NW_004955441 9495483 9512225 - 102015457 AGCD01037022;GBDK01417984;XM_005391046 XP_005391103 MODEL 9021064 protein-coding Slc31a2 solute carrier family 31 member 2 ENCODES a protein that exhibits copper ion transmembrane transporter activity (ortholog); INVOLVED IN copper ion import (ortholog); copper ion transport (ortholog); intracellular copper ion homeostasis (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); late endosome (ortholog); late endosome membrane (ortholog) NW_004955419 14332749 14343363 - 102027749 AGCD01020016;GBCQ01036886;XM_005382692 XP_005382749 MODEL 8812794 protein-coding Blzf1 basic leucine zipper nuclear factor 1 ENCODES a protein that exhibits enzyme binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN Golgi organization (ortholog); Golgi to plasma membrane protein transport (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); nucleoplasm (ortholog) NW_004955462 7856650 7879659 - 102015699 AGCD01049309;GBDI01293361;XM_005398201;XM_005398202;XM_013521407;XM_013521408;XM_013521409 XP_005398258;XP_005398259;XP_013376861;XP_013376862;XP_013376863 MODEL 8817488 ncrna LOC102021468 uncharacterized LOC102021468 NW_004955429 22067479 22079189 + 102021468 AGCD01029017;GBDK01379872;XR_001234457;XR_001234458 MODEL 8787458 pseudo LOC102028354 sorbitol dehydrogenase pseudogene NW_004955447 2956541 2960029 + 102028354 AGCD01040568 MODEL 8724016 ncrna LOC102012057 uncharacterized LOC102012057 NW_004955406 39330833 39331560 + 102012057 AGCD01006626;GBDK01343682;XR_259526 MODEL 8720941 ncrna LOC102005963 uncharacterized LOC102005963 NW_004955526 3269899 3285554 + 102005963 AGCD01069333;AGCD01069334;GBDI01352716;XR_001231967;XR_001231968;XR_264661 MODEL 10091041 ncrna LOC106146717 uncharacterized LOC106146717 NW_004955493 5712417 5715960 + 106146717 AGCD01061075;GBDF01179182;XR_001231279 MODEL 9003642 protein-coding Pirt phosphoinositide interacting regulator of transient receptor potential channels ENCODES a protein that exhibits phosphatidylinositol bisphosphate binding (ortholog); phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN behavioral response to pain (ortholog); positive regulation of cation channel activity (ortholog); response to heat (ortholog); FOUND IN plasma membrane (ortholog) NW_004955467 6375992 6391770 + 102028844 AGCD01051413;GBDI01166080;XM_005399356 XP_005399413 MODEL 8882573 protein-coding Tnfaip8 TNF alpha induced protein 8 ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity involved in apoptotic process (ortholog); molecular sequestering activity (ortholog); small molecule binding (ortholog); INVOLVED IN defense response to Gram-positive bacterium (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH esophagus squamous cell carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); Neoplasm Metastasis (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955408 38872305 38986932 + 102003095 AGCD01009055;AGCD01009056;AGCD01009057;AGCD01009058;GBDK01285833;XM_005376545;XM_005376549;XM_013507017;XM_013507021;XM_013507024;XM_013507030 XP_005376602;XP_005376606;XP_013362471;XP_013362475;XP_013362478;XP_013362484 MODEL 10343549 protein-coding LOC106149287 uncharacterized LOC106149287 NW_004955442 14044292 14047498 + 106149287 AGCD01037801;GBDF01112281;XM_013517649 XP_013373103 MODEL 8758639 pseudo LOC102027699 60S acidic ribosomal protein P0 pseudogene NW_004955449 12867020 12867965 - 102027699 AGCD01042126 MODEL 10337364 pseudo LOC106146448 60S ribosomal protein L17 pseudogene NW_004955406 40033148 40034802 + 106146448 AGCD01006651 MODEL 8720386 pseudo LOC102007426 GMP synthase [glutamine-hydrolyzing] pseudogene NW_004955476 3481522 3489789 + 102007426 AGCD01055252 MODEL 10124853 ncrna LOC106147001 uncharacterized LOC106147001 NW_004955407 29957305 29963756 - 106147001 AGCD01007621;GBDF01076088;XR_001231696 MODEL 10156536 ncrna LOC106148093 uncharacterized LOC106148093 NW_004955415 15726868 15732769 + 106148093 AGCD01016355;XR_001233229 MODEL 8946667 protein-coding Ndufb3 NADH:ubiquinone oxidoreductase subunit B3 ASSOCIATED WITH Alzheimer's disease (ortholog); cataract (ortholog); epilepsy (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955403 477138 483122 - 102024410 AGCD01001693;GBCB01001130;XM_005373215;XM_005373216;XM_005373217;XM_013511795 XP_005373272;XP_005373273;XP_005373274;XP_013367249 MODEL 8733744 protein-coding Tex38 testis expressed 38 FOUND IN plasma membrane (ortholog) NW_004955464 11658324 11659710 - 102014121 AGCD01050160;GBDF01010837;XM_005398656 XP_005398713 MODEL 8938024 protein-coding Lcn10 lipocalin 10 INVOLVED IN heart development (ortholog); inflammatory response (ortholog); macrophage activation (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog) NW_004955513 4063245 4066160 + 102030556 AGCD01066914;XM_005408481 XP_005408538 MODEL 8747472 protein-coding LOC102006323 testis-specific Y-encoded-like protein 1 NW_004955464 13241650 13244996 - 102006323 AGCD01050265;XM_013521580 XP_013377034 MODEL 10153343 pseudo LOC106146330 TBC1 domain family member 1-like NW_004955481 9975299 9976275 - 106146330 AGCD01057130 MODEL 9054227 protein-coding LOC102009305 olfactory receptor 1030-like NW_004955511 1711783 1712721 + 102009305 AGCD01066377;XM_005407973 XP_005408030 MODEL 8977210 protein-coding LOC102024182 trafficking protein particle complex subunit 2-like NW_004955405 29926824 29930245 - 102024182 AGCD01005262;GBDF01119098;XM_005374461;XR_259410 XP_005374518 MODEL 8996258 ncrna LOC102003208 uncharacterized LOC102003208 NW_004955407 34429774 34446403 + 102003208 AGCD01007721;AGCD01007722;GBDF01176950;XR_259606 MODEL 8771950 protein-coding Sidt1 SID1 transmembrane family member 1 ENCODES a protein that exhibits cholesterol binding (ortholog); double-stranded RNA binding (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog) NW_004955427 13649216 13747983 + 102021028 AGCD01027254;AGCD01027255;AGCD01027256;AGCD01027257;GBBH01198041;GBCE01010856;XM_005386616 XP_005386673 MODEL 9000811 ncrna LOC102008961 uncharacterized LOC102008961 NW_004955500 7699030 7703323 + 102008961 AGCD01063941;GBDF01005578;XR_001231468 MODEL 9007444 protein-coding LOC102026690 olfactory receptor 2G2-like NW_004955581 830029 831957 + 102026690 AGCD01075698;XM_005414271 XP_005414328 MODEL 8899349 ncrna LOC102020684 uncharacterized LOC102020684 NW_004955423 24373585 24432499 + 102020684 AGCD01024036;GBDF01085899;XR_001234038;XR_001234039;XR_001234040 MODEL 10375202 ncrna LOC106146718 uncharacterized LOC106146718 NW_004955407 37982790 37989413 + 106146718 AGCD01007792;GBDF01073999;XR_001231280 MODEL 8754840 protein-coding Esd esterase D ENCODES a protein that exhibits hydrolase activity, acting on ester bonds (ortholog); identical protein binding (ortholog); ASSOCIATED WITH Hypoxia (ortholog); osteoarthritis (ortholog); FOUND IN cytosol (ortholog) NW_004955431 524491 551871 - 102010084 AGCD01029869;AGCD01029870;GBBH01065118;GBCB01022499;XM_013515897 XP_013371351 MODEL 8770617 protein-coding Xrcc6 X-ray repair cross complementing 6 ENCODES a protein that exhibits 5'-deoxyribose-5-phosphate lyase activity (ortholog); ATP hydrolysis activity (ortholog); ATP-dependent activity, acting on DNA (ortholog); INVOLVED IN activation of innate immune response (ortholog); cellular hyperosmotic salinity response (ortholog); cellular response to gamma radiation (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; ASSOCIATED WITH Animal Disease Models (ortholog); basal cell carcinoma (ortholog); lung adenocarcinoma (ortholog); FOUND IN chromosome (ortholog); cytoplasm (ortholog); DNA-dependent protein kinase complex (ortholog) NW_004955413 27135785 27158344 + 102021869 AGCD01014495;AGCD01014496;GBCE01053767;XM_005379361;XM_005379362;XM_005379363;XM_005379364;XM_013511358;XM_013511359;XM_013511360 XP_005379418;XP_005379419;XP_005379420;XP_005379421;XP_013366812;XP_013366813;XP_013366814 MODEL 626189165 snorna SCARNA18 small Cajal body-specific RNA 18 8858827 protein-coding LOC102018121 vomeronasal type-1 receptor 90-like NW_004955429 12382792 12383739 + 102018121 AGCD01028715;XM_005387248 XP_005387305 MODEL 9050974 protein-coding Pah phenylalanine hydroxylase ENCODES a protein that exhibits identical protein binding (ortholog); iron ion binding (ortholog); phenylalanine 4-monooxygenase activity (ortholog); INVOLVED IN L-phenylalanine catabolic process (ortholog); L-tyrosine biosynthetic process (ortholog); protein hydroxylation (ortholog); PARTICIPATES IN phenylketonuria pathway; tyrosinemia type II pathway; tyrosinemia type III pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); breast cancer (ortholog); FOUND IN cytosol (ortholog) NW_004955405 37848486 37909163 - 102005992 AGCD01005461;AGCD01005462;GBCQ01001898;XM_005374572 XP_005374629 MODEL 8807198 pseudo LOC102004568 poly(A) RNA polymerase GLD2 pseudogene NW_004955458 6342070 6359704 - 102004568 AGCD01047558;AGCD01047559 MODEL 8911962 pseudo LOC102010100 putative homeodomain transcription factor 2 pseudogene NW_004955442 14465591 14468091 + 102010100 AGCD01037821 MODEL 8813157 pseudo LOC102023881 ubiquilin-4-like NW_004955410 25786570 25790499 - 102023881 AGCD01011174 MODEL 8984655 pseudo LOC102012489 B-cell CLL/lymphoma 7 protein family member C pseudogene NW_004955402 2619020 2627815 + 102012489 AGCD01000086 MODEL 8825211 ncrna LOC102030136 uncharacterized LOC102030136 NW_004955402 3308690 3310194 + 102030136 AGCD01000098;GBDF01074907;XR_259023 MODEL 39133443 snrna U4 U4 spliceosomal RNA 9021081 protein-coding LOC102028355 cytochrome P450 2A13-like NW_004955578 255108 261918 + 102028355 AGCD01075468;GBDF01282258;XM_013509643 XP_013365097 MODEL 8915713 protein-coding LOC102021470 olfactory receptor 8H1-like NW_004955511 5092184 5093131 + 102021470 AGCD01066548;XM_005408085 XP_005408142 MODEL 9015459 protein-coding Srgap3 SLIT-ROBO Rho GTPase activating protein 3 INVOLVED IN regulation of postsynapse assembly (ortholog); ASSOCIATED WITH Chromosome 3, Monosomy 3p25 (ortholog); intellectual disability (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog) NW_004955561 612152 835209 - 102027910 AGCD01073823;AGCD01073824;AGCD01073825;GBBH01172154;XM_005413001;XM_005413003;XM_013509102;XM_013509103 XP_005413058;XP_005413060;XP_013364556;XP_013364557 MODEL 8740501 protein-coding Bmal1 basic helix-loop-helix ARNT like 1 ENCODES a protein that exhibits aryl hydrocarbon receptor binding (ortholog); bHLH transcription factor binding (ortholog); DNA binding (ortholog); INVOLVED IN autophagy (ortholog); circadian regulation of gene expression (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); alcohol withdrawal syndrome (ortholog); antidepressant type abuse (ortholog); FOUND IN chromatoid body (ortholog); CLOCK-BMAL transcription complex (ortholog); cytoplasm (ortholog) NW_004955414 28652663 28748360 + 102018716 AGCD01015682;AGCD01015683;AGCD01015684;AGCD01015685;GBDF01194319;XM_005380316;XM_005380317;XM_005380319;XM_005380321;XM_013511990;XM_013511991 XP_005380373;XP_005380374;XP_005380376;XP_005380378;XP_013367444;XP_013367445 MODEL 8955422 protein-coding Polh DNA polymerase eta ENCODES a protein that exhibits DNA polymerase activity (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN cellular response to UV-C (ortholog); DNA damage tolerance (ortholog); DNA synthesis involved in DNA repair (ortholog); ASSOCIATED WITH breast cancer (ortholog); female breast cancer (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955437 9392484 9409186 + 102020609 AGCD01034528;AGCD01034529;GBDF01124027;GBDK01171313;XM_013516824;XM_013516825;XM_013516826 XP_013372278;XP_013372279;XP_013372280 MODEL 150537112 snorna SNORD37 small nucleolar RNA, C/D box 37 9047385 pseudo LOC102010103 ubiquitin-conjugating enzyme E2 J1 pseudogene NW_004955444 6424523 6426955 - 102010103 AGCD01038865 MODEL 8810772 protein-coding Ift81 intraflagellar transport 81 ENCODES a protein that exhibits tubulin binding (ortholog); INVOLVED IN cilium assembly (ortholog); intraciliary transport involved in cilium assembly (ortholog); regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); ciliopathy (ortholog); Dwarfism (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955482 7114639 7182378 + 102020121 AGCD01057438;AGCD01057439;AGCD01057440;AGCD01057441;AGCD01057442;AGCD01057443;GBDF01125793;XM_005403140;XM_013503735 XP_005403197;XP_013359189 MODEL 8827762 pseudo LOC102029424 coiled-coil domain-containing protein 152-like NW_004955510 945163 946018 + 102029424 AGCD01066174 MODEL 8880003 pseudo LOC102025621 centrosomal protein of 76 kDa pseudogene NW_004955543 2321390 2322564 + 102025621 AGCD01071650 MODEL 8938702 protein-coding Tnfaip8l1 TNF alpha induced protein 8 like 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of TOR signaling (ortholog); FOUND IN cytoplasm (ortholog) NW_004955495 4334443 4344283 - 102006588 AGCD01061914;GBDK01194751;XM_005405789 XP_005405846 MODEL 8720484 protein-coding Spdl1 spindle apparatus coiled-coil protein 1 ENCODES a protein that exhibits enzyme binding (ortholog); kinetochore binding (ortholog); INVOLVED IN cell migration (ortholog); establishment of mitotic spindle orientation (ortholog); mitotic metaphase chromosome alignment (ortholog); ASSOCIATED WITH Perinatal Death (ortholog); FOUND IN nucleus (ortholog); outer kinetochore (ortholog); spindle pole (ortholog) NW_004955408 22590474 22619168 + 102013477 AGCD01008578;GBDF01223309;XM_005376306;XM_005376307;XM_005376308 XP_005376363;XP_005376364;XP_005376365 MODEL 8854603 protein-coding LOC102015462 ankyrin repeat domain-containing protein 18A-like NW_004955556 26547 41723 + 102015462 AGCD01073156;AGCD01073157;AGCD01073158;XM_005412617 XP_005412674 MODEL 8857232 ncrna LOC102025278 uncharacterized LOC102025278 NW_004955513 3497931 3501438 - 102025278 AGCD01066906;GBDF01195803;XR_264468 MODEL 8760097 protein-coding Bmerb1 bMERB domain containing 1 INVOLVED IN negative regulation of cell motility involved in cerebral cortex radial glia guided migration (ortholog); negative regulation of microtubule depolymerization (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Familial Thoracic Aortic Aneurysm 4 (ortholog); FOUND IN microtubule cytoskeleton (ortholog) NW_004955442 317334 442514 + 102022429 AGCD01037419;AGCD01037420;AGCD01037421;AGCD01037422;AGCD01037423;AGCD01037424;AGCD01037425;GBDF01078842;XM_005391062;XM_005391063 XP_005391119;XP_005391120 MODEL 8887810 protein-coding Trrap transformation/transcription domain associated protein ENCODES a protein that exhibits chromatin binding (ortholog); transcription coactivator activity (ortholog); transcription coregulator activity (ortholog); INVOLVED IN positive regulation of double-strand break repair via homologous recombination (ortholog); regulation of cell cycle (ortholog); regulation of DNA-templated transcription (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autosomal dominant nonsyndromic deafness 75 (ortholog); Developmental Delay with or without Dysmorphic Facies and Autism (ortholog); Developmental Disabilities (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nucleoplasm (ortholog); nucleosome (ortholog) NW_004955460 14641891 14761641 + 102003739 AGCD01048757;AGCD01048758;AGCD01048759;AGCD01048760;GBDF01050549;XM_005397925;XM_005397926;XM_005397928;XM_005397930;XM_013521171;XM_013521172;XM_013521173;XM_013521174;XM_013521175;XM_013521176;XM_013521177 XP_005397982;XP_005397983;XP_005397985;XP_005397987;XP_013376625;XP_013376626;XP_013376627;XP_013376628;XP_013376629;XP_013376630;XP_013376631 MODEL 8925172 protein-coding Ndufb4 NADH:ubiquinone oxidoreductase subunit B4 FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955427 20117550 20124114 + 102024708 AGCD01027394;GBDJ01025734;XM_005386467 XP_005386524 MODEL 8918912 protein-coding Slc32a1 solute carrier family 32 member 1 ENCODES a protein that exhibits gamma-aminobutyric acid transmembrane transporter activity (ortholog); gamma-aminobutyric acid:proton antiporter activity (ortholog); glycine transmembrane transporter activity (ortholog); INVOLVED IN beta-alanine transport (ortholog); gamma-aminobutyric acid import (ortholog); gamma-aminobutyric acid transport (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); Developmental and Epileptic Encephalopathy 114 (ortholog); epilepsy (ortholog); FOUND IN cell surface (ortholog); cell tip (ortholog); cone cell pedicle (ortholog) NW_004955445 18033128 18038002 - 102009772 AGCD01039898;XM_005392531 XP_005392588 MODEL 8707533 protein-coding LOC102027026 putative olfactory receptor 14L1 NW_004955581 860614 863806 + 102027026 AGCD01075699;XM_005414272 XP_005414329 MODEL 10346809 protein-coding LOC106150110 uncharacterized LOC106150110 NW_004955465 10014897 10017658 - 106150110 AGCD01050498;AGCD01050499;XM_013521776 XP_013377230 MODEL 8949894 protein-coding LOC102006328 zinc finger protein 792-like NW_004955468 4283745 4310889 + 102006328 AGCD01051904;AGCD01051905;GBDK01043079;XM_005400008;XM_005400009;XM_005400010;XM_005400011;XM_013522364;XM_013522365 XP_005400065;XP_005400066;XP_005400067;XP_005400068;XP_013377818;XP_013377819 MODEL 8887105 protein-coding LOC102012060 cytochrome c oxidase subunit 6A1, mitochondrial ASSOCIATED WITH Charcot-Marie-Tooth disease recessive intermediate D (ortholog); neuropathy (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955455 11201031 11203644 - 102012060 AGCD01045986;GBCQ01009037;XM_005396510 XP_005396567 MODEL 8771752 protein-coding LOC102009306 olfactory receptor 10AG1-like NW_004955511 845267 846223 - 102009306 AGCD01066345;XM_005408213 XP_005408270 MODEL 10273526 protein-coding LOC106146331 uncharacterized LOC106146331 NW_004955443 7745262 7765929 - 106146331 AGCD01038297;GBDF01084551;XM_013518034 XP_013373488 MODEL 9035096 pseudo LOC102003520 60S ribosomal protein L39 pseudogene NW_004955459 14326789 14327010 - 102003520 AGCD01048297 MODEL 8987458 protein-coding LOC102005965 cytochrome b-c1 complex subunit 1, mitochondrial ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN mitochondrial electron transport, ubiquinol to cytochrome c (ortholog); response to activity (ortholog); response to alkaloid (ortholog); PARTICIPATES IN electron transport chain pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); hypertrophic cardiomyopathy (ortholog); PARKINSONISM WITH POLYNEUROPATHY (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex III (ortholog) NW_004955532 685315 691286 - 102005965 AGCD01070144;GBDF01007354;XM_013507657 XP_013363111 MODEL 10371133 ncrna LOC106146449 uncharacterized LOC106146449 NW_004955479 5081537 5082857 - 106146449 AGCD01056340;GBDF01278126;XR_001230884 MODEL 10165605 protein-coding LOC106149288 octapeptide-repeat protein T2-like NW_004955442 14334342 14336703 + 106149288 AGCD01037810;AGCD01037811;GBBH01187411;XM_013517651 XP_013373105 MODEL 8932235 protein-coding Kpna5 karyopherin subunit alpha 5 FOUND IN cytosol (ortholog) NW_004955436 48880 102447 + 102006606 AGCD01033530;AGCD01033531;GBDF01100155;XM_005389117;XM_013516686 XP_005389174;XP_013372140 MODEL 9025653 pseudo LOC102007430 protein archease pseudogene NW_004955481 2490488 2495172 - 102007430 AGCD01056876 MODEL 8755541 protein-coding Pisd phosphatidylserine decarboxylase ENCODES a protein that exhibits phosphatidylserine decarboxylase activity (ortholog); INVOLVED IN lipid droplet formation (ortholog); mitochondrial protein catabolic process (ortholog); phosphatidylethanolamine biosynthetic process (ortholog); PARTICIPATES IN forkhead class A signaling pathway; glycerophospholipid metabolic pathway; ASSOCIATED WITH Childhood Schizophrenia (ortholog); genetic disease (ortholog); Liberfarb Syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lipid droplet (ortholog) NW_004955455 5744816 5789408 - 102011278 AGCD01045751;AGCD01045752;GBDI01217037;XM_005396318;XM_005396319;XM_005396321;XM_005396322;XM_013520418;XM_013520419;XM_013520420 XP_005396375;XP_005396376;XP_005396378;XP_005396379;XP_013375872;XP_013375873;XP_013375874 MODEL 8788668 ncrna LOC102019687 uncharacterized LOC102019687 NW_004955470 7596316 7606300 + 102019687 AGCD01052800;GBDF01150010;XR_001237033 MODEL 8700998 protein-coding Tex44 testis expressed 44 FOUND IN cytoplasm (ortholog) NW_004955453 4108596 4110610 - 102007083 AGCD01044678;GBDF01007868;XM_005395707 XP_005395764 MODEL 10273783 ncrna LOC106146573 uncharacterized LOC106146573 NW_004955485 9116394 9118708 - 106146573 AGCD01058746;GBDF01246238;XR_001231066 MODEL 9031441 protein-coding Sidt2 SID1 transmembrane family member 2 ENCODES a protein that exhibits AP-1 adaptor complex binding (ortholog); AP-2 adaptor complex binding (ortholog); double-stranded RNA binding (ortholog); INVOLVED IN cell morphogenesis (ortholog); glucose homeostasis (ortholog); regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); ASSOCIATED WITH Lung Neoplasms (ortholog); metabolic dysfunction-associated steatotic liver disease (ortholog); FOUND IN lysosomal membrane (ortholog); lysosome (ortholog); plasma membrane (ortholog) NW_004955412 18505453 18521667 + 102024322 AGCD01012944;GBDJ01139640;XM_005378196;XM_005378197 XP_005378253;XP_005378254 MODEL 10065690 ncrna LOC106146450 uncharacterized LOC106146450 NW_004955479 10276908 10283823 - 106146450 AGCD01056532;AGCD01056533;GBDF01023724;XR_001230887 MODEL 8935529 ncrna LOC102029425 uncharacterized LOC102029425 NW_004955429 18914703 18927219 - 102029425 AGCD01028928;GBDF01248960;XR_001234470;XR_261361 MODEL 8865325 protein-coding Lcn12 lipocalin 12 ENCODES a protein that exhibits retinoic acid binding (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog) NW_004955513 4997015 5003691 + 102027218 AGCD01066949;GBDF01113483;XM_005408566;XM_013506642;XM_013506643 XP_005408623;XP_013362096;XP_013362097 MODEL 626189168 snorna SCARNA18B small Cajal body-specific RNA 18B 8991392 protein-coding Esf1 ESF1 nucleolar pre-rRNA processing protein NW_004955415 23156521 23221027 - 102003229 AGCD01016551;AGCD01016552;GBCQ01150807;XM_005380886 XP_005380943 MODEL 8860498 ncrna LOC102030139 uncharacterized LOC102030139 NW_004955449 13875725 13885735 + 102030139 AGCD01042146;AGCD01042147;GBDF01158341;XR_262499 MODEL 9048275 protein-coding LOC102027701 vegetative cell wall protein gp1-like NW_004955402 34131415 34131735 - 102027701 AGCD01000851;XM_005373168 XP_005373225 MODEL 8940206 protein-coding Ndufb5 NADH:ubiquinone oxidoreductase subunit B5 ASSOCIATED WITH acute myocardial infarction (ortholog); COVID-19 (ortholog); Diastolic Dysfunction (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955420 8778271 8793634 + 102013175 AGCD01020732;AGCD01020733;GBBH01033131;GBDF01009190;XM_013513573 XP_013369027 MODEL 8745286 pseudo LOC102003213 chromobox protein homolog 3 pseudogene NW_004955408 30983925 30997950 + 102003213 AGCD01008818;AGCD01008819 MODEL 8965047 pseudo LOC102028357 olfactory receptor 2G3-like NW_004955581 1011972 1012935 + 102028357 AGCD01075706 MODEL 9043280 ncrna LOC102018526 uncharacterized LOC102018526 NW_004955527 465817 467792 + 102018526 AGCD01069385;GBDF01190302;XR_264664 MODEL 10334394 protein-coding LOC106147002 uncharacterized LOC106147002 NW_004955511 5846173 5865432 + 106147002 AGCD01066587;AGCD01066588;AGCD01066589;AGCD01066590;GBDJ01148743;XM_013506433 XP_013361887 MODEL 10243464 ncrna LOC106148094 uncharacterized LOC106148094 NW_004955415 22705712 22722453 - 106148094 AGCD01016541;GBDK01226888;XR_001233230;XR_001233231;XR_001233232 MODEL 8724654 protein-coding LOC102008964 zinc finger CCHC-type and RNA-binding motif-containing protein 1 NW_004955426 18643581 18647670 - 102008964 AGCD01026526;AGCD01026527;GBCC01039405;XM_005386263 XP_005386320 MODEL 8938419 protein-coding LOC102020686 olfactory receptor 18-like NW_004955495 371183 377463 + 102020686 AGCD01061625;XM_013505042 XP_013360496 MODEL 8820691 protein-coding Poli DNA polymerase iota ENCODES a protein that exhibits DNA polymerase activity (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN cellular response to UV-C (ortholog); translesion synthesis (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog) NW_004955402 38866528 38891235 + 102024741 AGCD01000971;GBDI01226624;XM_013510810;XM_013510820 XP_013366264;XP_013366274 MODEL 8933465 protein-coding Pheta2 PH domain containing endocytic trafficking adaptor 2 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN endosome organization (ortholog); receptor recycling (ortholog); retrograde transport, endosome to Golgi (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN clathrin-coated vesicle (ortholog); early endosome (ortholog); recycling endosome (ortholog) NW_004955413 27475658 27480879 + 102005791 AGCD01014508;AGCD01014509;GBDF01082922;XM_005379400;XM_005379401;XM_005379402;XM_005379403;XM_013511581;XM_013511582 XP_005379457;XP_005379458;XP_005379459;XP_005379460;XP_013367035;XP_013367036 MODEL 8876927 pseudo LOC102004569 60S ribosomal protein L30-like NW_004955409 9047353 9047699 - 102004569 AGCD01009428 MODEL 8816666 protein-coding Xrn1 5'-3' exoribonuclease 1 ENCODES a protein that exhibits 5'-3' RNA exonuclease activity (ortholog); G-quadruplex DNA binding (ortholog); G-quadruplex RNA binding (ortholog); INVOLVED IN cellular response to cycloheximide (ortholog); cellular response to puromycin (ortholog); histone mRNA catabolic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Neurodevelopmental Disorders (ortholog); Staphylococcal Infections (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); dendrite (ortholog) NW_004955508 3441540 3561896 + 102014073 AGCD01065811;AGCD01065812;AGCD01065813;AGCD01065814;AGCD01065815;AGCD01065816;GBBH01016162;XM_005407742;XM_013506250;XM_013506251;XM_013506252 XP_005407799;XP_013361704;XP_013361705;XP_013361706 MODEL 9023420 protein-coding Paics phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase ENCODES a protein that exhibits identical protein binding (ortholog); phosphoribosylaminoimidazole carboxylase activity (ortholog); phosphoribosylaminoimidazolesuccinocarboxamide synthase activity (ortholog); INVOLVED IN 'de novo' AMP biosynthetic process (ortholog); 'de novo' IMP biosynthetic process (ortholog); 'de novo' XMP biosynthetic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE DEFICIENCY (ortholog); schizophrenia (ortholog); FOUND IN cytoplasm (ortholog) NW_004955447 14558468 14571081 - 102007482 AGCD01041014;AGCD01041015;GBDF01119964;GBDJ01005364;XM_013518500 XP_013373954 MODEL 8720440 protein-coding LOC102012491 kinesin-like protein KIF13B NW_004955802 3103 18233 - 102012491 AGCD01078376;GBDK01191507;GBDK01191509;XM_005415115 XP_005415172 MODEL 8978856 ncrna LOC102024185 uncharacterized LOC102024185 NW_004955453 16940401 16952753 - 102024185 AGCD01044916;GBDJ01248425;XR_001236187 MODEL 39133086 snrna U4 U4 spliceosomal RNA 8718061 protein-coding LOC102021471 secretoglobin family 1D member-like NW_004955511 6342089 6346015 + 102021471 AGCD01066602;GBCB01129881;XM_013506417 XP_013361871 MODEL 8756614 pseudo LOC102026694 60S ribosomal protein L11-like NW_004955402 31552734 31553917 + 102026694 AGCD01000792 MODEL 10292071 protein-coding LOC106146332 butyrophilin subfamily 3 member A3-like NW_004955581 1167931 1192796 + 106146332 AGCD01075717;AGCD01075718;GBBH01227570;XM_013509763;XM_013509764;XM_013509765;XR_001232490 XP_013365217;XP_013365218;XP_013365219 MODEL 8845720 protein-coding Ift88 intraflagellar transport 88 ENCODES a protein that exhibits kinesin binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); brain development (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); autosomal recessive polycystic kidney disease (ortholog); basal cell carcinoma (ortholog); FOUND IN acrosomal membrane (ortholog); axonemal basal plate (ortholog); axoneme (ortholog) NW_004955497 1338959 1454788 + 102011216 AGCD01062457;AGCD01062458;AGCD01062459;AGCD01062460;GBCE01023354;XM_005406308;XM_005406309;XM_005406310;XM_013505482;XM_013505483;XM_013505484;XM_013505486;XR_264192 XP_005406365;XP_005406366;XP_005406367;XP_013360936;XP_013360937;XP_013360938;XP_013360940 MODEL 8919803 protein-coding Kpna6 karyopherin subunit alpha 6 ENCODES a protein that exhibits nuclear import signal receptor activity (ortholog); INVOLVED IN entry of viral genome into host nucleus through nuclear pore complex via importin (ortholog); maternal process involved in female pregnancy (ortholog); positive regulation of cytokine production involved in inflammatory response (ortholog); FOUND IN NLS-dependent protein nuclear import complex (ortholog) NW_004955452 10493025 10542898 + 102015171 AGCD01044277;AGCD01044278;AGCD01044279;GBBH01203191;XM_005395041;XM_005395042 XP_005395098;XP_005395099 MODEL 8780167 ncrna LOC102018125 uncharacterized LOC102018125 NW_004955523 895086 911354 - 102018125 AGCD01068485;GBCE01011399;XR_264635 MODEL 8708132 protein-coding Tnfaip8l2 TNF alpha induced protein 8 like 2 INVOLVED IN negative regulation of inflammatory response (ortholog); negative regulation of T cell activation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); lysosome (ortholog); nucleus (ortholog) NW_004955588 514567 517314 + 102026059 AGCD01076115;GBDF01159306;XM_005414498 XP_005414555 MODEL 8756906 pseudo LOC102015465 E3 ubiquitin-protein ligase RLIM pseudogene NW_004955443 15375124 15377155 - 102015465 AGCD01038538;XM_005392026 MODEL 8779419 protein-coding LOC102020687 apomucin-like NW_004955500 582 31342 + 102020687 AGCD01063628;AGCD01063629;GBBH01061730;XM_005406705 XP_005406762 MODEL 9060053 protein-coding Tex46 testis expressed 46 INVOLVED IN single fertilization (ortholog) NW_004955452 3038467 3041193 - 102011394 AGCD01043910;GBDF01000402;XM_013519471 XP_013374925 MODEL 8767738 protein-coding Spdya speedy/RINGO cell cycle regulator family member A ENCODES a protein that exhibits protein kinase activator activity (ortholog); protein kinase binding (ortholog); INVOLVED IN DNA damage response (ortholog); establishment of protein localization to telomere (ortholog); G1/S transition of mitotic cell cycle (ortholog); FOUND IN chromosome, telomeric region (ortholog); endoplasmic reticulum exit site (ortholog); nuclear envelope (ortholog) NW_004955469 10687519 10744808 + 102014767 AGCD01052545;AGCD01052546;AGCD01052547;AGCD01052548;AGCD01052549;GBDF01279718;XM_005400534;XM_005400535;XM_013522619 XP_005400591;XP_005400592;XP_013378073 MODEL 9046039 protein-coding Bmf Bcl2 modifying factor INVOLVED IN anoikis (ortholog); negative regulation of apoptotic signaling pathway (ortholog); negative regulation of autophagy (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; ASSOCIATED WITH B-Cell Chronic Lymphocytic Leukemia (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN acrosomal vesicle (ortholog); actin cytoskeleton (ortholog); cytoplasm (ortholog) NW_004955416 7048654 7068917 - 102014243 AGCD01016961;GBBH01186132;XM_005381214;XM_005381215 XP_005381271;XP_005381272 MODEL 8777371 ncrna LOC102029426 uncharacterized LOC102029426 NW_004955430 789340 791752 - 102029426 AGCD01029106;XR_261405 MODEL 10160279 protein-coding LOC106146452 uncharacterized LOC106146452 NW_004955479 5232412 5252168 - 106146452 AGCD01056340;AGCD01056341;XM_013503304 XP_013358758 MODEL 10325963 protein-coding LOC106150111 tubulin beta-4B chain-like NW_004955465 10070773 10076073 + 106150111 AGCD01050500;XM_013521777 XP_013377231 MODEL 8958279 protein-coding Srgn serglycin ENCODES a protein that exhibits collagen binding (ortholog); INVOLVED IN granzyme-mediated programmed cell death signaling pathway (ortholog); maintenance of granzyme B location in T cell secretory granule (ortholog); maintenance of protease location in mast cell secretory granule (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytolytic granule (ortholog); extracellular region (ortholog); Golgi apparatus (ortholog) NW_004955437 21954837 21966552 - 102026156 AGCD01034925;GBDI01004036;XM_005390096 XP_005390153 MODEL 8824114 protein-coding LOC102012063 NEDD4-binding protein 2-like 2 NW_004955407 28220425 28222169 + 102012063 AGCD01007577;XM_013505975 XP_013361429 MODEL 8909570 ncrna LOC102009308 uncharacterized LOC102009308 NW_004955431 13033825 13037782 - 102009308 AGCD01030276;GBDF01225489;XR_001234590 MODEL 8711922 protein-coding LOC102010104 olfactory receptor 7G2-like NW_004955563 273849 274787 + 102010104 AGCD01074059;XM_005413199 XP_005413256 MODEL 10110069 ncrna LOC106146719 uncharacterized LOC106146719 NW_004955493 149339 151202 + 106146719 AGCD01060839;GBCQ01058304;XR_001231281 MODEL 8982458 pseudo LOC102012495 quinone oxidoreductase pseudogene NW_004955405 19872 21878 + 102012495 AGCD01004551 MODEL 8721617 pseudo LOC102003523 dimethylaniline monooxygenase [N-oxide-forming] 5-like NW_004955462 10251055 10272845 - 102003523 AGCD01049359;AGCD01049360 MODEL 10369657 protein-coding LOC106149290 translation initiation factor IF-2-like NW_004955442 18319360 18320575 + 106149290 AGCD01038002;AGCD01038003;XM_013517655 XP_013373109 MODEL 8791554 protein-coding LOC102028358 atherin-like NW_004955449 14010872 14011554 + 102028358 AGCD01042156;XM_005393433 XP_005393490 MODEL 9029747 pseudo LOC102003214 graves disease carrier protein pseudogene NW_004955459 10102037 10104221 + 102003214 AGCD01048180 MODEL 10154739 ncrna LOC106150112 uncharacterized LOC106150112 NW_004955406 25324493 25342379 - 106150112 AGCD01006229;XR_001236731 MODEL 9046931 protein-coding Pithd1 PITH domain containing 1 INVOLVED IN penetration of cumulus oophorus (ortholog); penetration of zona pellucida (ortholog); positive regulation of DNA-templated transcription (ortholog); FOUND IN cytoplasm (ortholog); sperm cytoplasmic droplet (ortholog) NW_004955452 3696632 3708166 + 102021078 AGCD01043935;AGCD01043936;GBCE01152531;XM_005394782 XP_005394839 MODEL 10334692 protein-coding LOC106148095 uncharacterized LOC106148095 NW_004955415 27475155 27478461 - 106148095 AGCD01016631;AGCD01016632;XM_013512360 XP_013367814 MODEL 8966875 protein-coding LOC102019690 zinc finger protein 239-like NW_004955472 7099528 7311751 - 102019690 AGCD01053616;AGCD01053617;AGCD01053618;AGCD01053619;GBCQ01110878;XM_005401140;XM_005401141;XM_005401142;XM_005401143;XM_013522998;XM_013522999;XM_013523000;XM_013523001;XM_013523002;XM_013523003;XM_013523004;XM_013523005;XM_013523006;XM_013523007;XM_013523008;XM_013523009;XM_013523010;XM_013523011;XR_001237089;XR_001237090;XR_001237091;XR_001237092;XR_001237093;XR_001237094;XR_001237095 XP_005401197;XP_005401198;XP_005401199;XP_005401200;XP_013378452;XP_013378453;XP_013378454;XP_013378455;XP_013378456;XP_013378457;XP_013378458;XP_013378459;XP_013378460;XP_013378461;XP_013378462;XP_013378463;XP_013378464;XP_013378465 MODEL 10325905 ncrna LOC106146574 uncharacterized LOC106146574 NW_004955485 3473033 3475862 - 106146574 AGCD01058537;GBDF01207539;XR_001231067 MODEL 8965633 pseudo LOC102023882 peroxisomal membrane protein 4 pseudogene NW_004955464 3326144 3336507 + 102023882 AGCD01049973 MODEL 8761807 protein-coding Trub1 TruB pseudouridine synthase family member 1 ENCODES a protein that exhibits pre-miRNA binding (ortholog); pseudouridine synthase activity (ortholog); tRNA pseudouridine synthase activity (ortholog); INVOLVED IN mRNA pseudouridine synthesis (ortholog); positive regulation of pre-miRNA processing (ortholog); tRNA modification (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955431 19840827 19877930 + 102020477 AGCD01030455;AGCD01030456;GBDF01225347;XM_005387841 XP_005387898 MODEL 8994608 pseudo LOC102027030 zinc finger CCCH domain-containing protein 11A pseudogene NW_004955402 39450405 39453112 - 102027030 AGCD01000981;XM_005372954;XM_005372955 MODEL 126903058 scarna SCARNA2 small Cajal body-specific RNA 2 8968029 pseudo LOC102004571 PEST proteolytic signal-containing nuclear protein-like NW_004955409 13992640 13993276 - 102004571 AGCD01009631 MODEL 8755049 protein-coding Lcn6 lipocalin 6 INVOLVED IN acrosome reaction (ortholog); calcium ion homeostasis (ortholog); cell maturation (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog) NW_004955513 4860420 4863716 - 102022729 AGCD01066943;GBBH01173461;XM_013506588 XP_013362042 MODEL 9014614 protein-coding LOC102006333 olfactory receptor 52D1 NW_004955414 21395818 21396783 + 102006333 AGCD01015418;XM_005380089 XP_005380146 MODEL 9001101 protein-coding Esm1 endothelial cell specific molecule 1 ENCODES a protein that exhibits hepatocyte growth factor receptor binding (ortholog); integrin binding (ortholog); INVOLVED IN angiogenesis (ortholog); positive regulation of cell population proliferation (ortholog); positive regulation of hepatocyte growth factor receptor signaling pathway (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Liver Neoplasms (ortholog) NW_004955446 12644220 12665351 + 102021812 AGCD01040239;GBBH01086228;XM_005392712 XP_005392769 MODEL 9039371 pseudo LOC102030143 40S ribosomal protein S19 pseudogene NW_004955749 26772 27209 + 102030143 AGCD01078262 MODEL 8846315 pseudo LOC102005969 protein FAM204A pseudogene NW_004955438 15499120 15499834 + 102005969 AGCD01035370 MODEL 8937325 protein-coding Paip1 poly(A) binding protein interacting protein 1 ENCODES a protein that exhibits translation activator activity (ortholog); INVOLVED IN CRD-mediated mRNA stabilization (ortholog); negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (ortholog); positive regulation of cytoplasmic translation (ortholog); FOUND IN cytosol (ortholog); mCRD-mediated mRNA stability complex (ortholog); plasma membrane (ortholog) NW_004955446 18801971 18830816 + 102030360 AGCD01040415;GBDF01043745;XM_005392735 XP_005392792 MODEL 8980956 protein-coding Ndufb6 NADH:ubiquinone oxidoreductase subunit B6 INVOLVED IN mitochondrial ATP synthesis coupled electron transport (ortholog); ASSOCIATED WITH Hypertriglyceridemia (ortholog); obesity (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955472 3054026 3064530 + 102014446 AGCD01053499;AGCD01053500;GBBH01004455;GBCQ01007644;XM_013523044 XP_013378498 MODEL 10106586 ncrna LOC106147003 uncharacterized LOC106147003 NW_004955407 2924370 2960558 - 106147003 AGCD01006844;AGCD01006845;GBDF01064437;XR_001231699 MODEL 8937104 protein-coding LOC102018529 putative olfactory receptor 2B3 NW_004955537 2603825 2604915 - 102018529 AGCD01070933;GBDF01030354;XM_005410626 XP_005410683 MODEL 8893359 pseudo LOC102025284 NAD-dependent malic enzyme, mitochondrial pseudogene NW_004955525 4345346 4349829 + 102025284 AGCD01069189 MODEL 8922785 ncrna LOC102008965 uncharacterized LOC102008965 NW_004955508 2550384 2643799 + 102008965 AGCD01065788;AGCD01065789;AGCD01065790;AGCD01065791;GBDF01249960;XR_264386 MODEL 8754407 protein-coding Sigirr single Ig and TIR domain containing INVOLVED IN acute-phase response (ortholog); negative regulation of chemokine production (ortholog); negative regulation of cytokine-mediated signaling pathway (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN membrane (ortholog) NW_004955476 11603375 11610606 + 102023587 AGCD01055466;GBCE01074106;XM_005401866;XM_013502933;XM_013502934;XM_013502935 XP_005401923;XP_013358387;XP_013358388;XP_013358389 MODEL 8974164 protein-coding Sri sorcin ENCODES a protein that exhibits calcium ion binding (ortholog); DNA-binding transcription factor binding (ortholog); identical protein binding (ortholog); INVOLVED IN calcium ion transport (ortholog); heart development (ortholog); negative regulation of cardiac muscle contraction (ortholog); ASSOCIATED WITH Cardiomegaly (ortholog); congestive heart failure (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); chromaffin granule membrane (ortholog) NW_004955432 5541311 5559781 - 102017906 AGCD01030786;GBCQ01042054;XM_005387978;XM_005387979;XM_013516016 XP_005388035;XP_005388036;XP_013371470 MODEL 9042750 protein-coding Polk DNA polymerase kappa ENCODES a protein that exhibits DNA polymerase activity (ortholog); DNA-directed DNA polymerase activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN cellular response to UV (ortholog); DNA biosynthetic process (ortholog); DNA damage response (ortholog); PARTICIPATES IN nucleotide excision repair pathway; ASSOCIATED WITH epilepsy (ortholog); glioblastoma (ortholog); Micronuclei, Chromosome-Defective (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); site of DNA damage (ortholog) NW_004955425 25164749 25228064 - 102025704 AGCD01025910;AGCD01025911;GBDK01191546;XM_005386051;XM_013514789;XM_013514790;XM_013514791;XM_013514792;XM_013514793;XM_013514794 XP_005386108;XP_013370243;XP_013370244;XP_013370245;XP_013370246;XP_013370247;XP_013370248 MODEL 10136577 protein-coding LOC106150113 vomeronasal type-1 receptor 4-like NW_004955465 12873080 12873832 - 106150113 AGCD01050566;AGCD01050567;XM_013521781 XP_013377235 MODEL 8700689 protein-coding Slc33a1 solute carrier family 33 member 1 ENCODES a protein that exhibits acetyl-CoA transmembrane transporter activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN acetyl-CoA transmembrane transport (ortholog); ASSOCIATED WITH cataract (ortholog); Congenital Cataracts, Hearing Loss, and Neurodegeneration (ortholog); Developmental Disabilities (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955448 6885153 6905641 - 102016652 AGCD01041396;GBDI01172474;XM_005393070;XM_005393071 XP_005393127;XP_005393128 MODEL 8729757 protein-coding LOC102018133 keratin, type II microfibrillar, component 7C-like NW_004955547 2600470 2610128 - 102018133 AGCD01072286;AGCD01072287;XM_013508445 XP_013363899 MODEL 8858940 ncrna LOC102025622 uncharacterized LOC102025622 NW_004955545 1578903 1584883 - 102025622 AGCD01071861;GBDJ01093185;XR_001232199;XR_001232200;XR_001232201 MODEL 8916014 protein-coding Spdye1 speedy/RINGO cell cycle regulator family member E1 NW_004955460 10914 53605 - 102009694 AGCD01048326;AGCD01048327;AGCD01048328;AGCD01048329;AGCD01048330;AGCD01048331;GBDF01051973;XM_005397708;XM_013521294;XM_013521295 XP_005397765;XP_013376748;XP_013376749 MODEL 39133667 snrna U4 U4 spliceosomal RNA 8748044 ncrna LOC102027702 uncharacterized LOC102027702 NW_004955403 8147712 8150447 - 102027702 AGCD01001869;GBDK01306094;XR_259162 MODEL 8803800 protein-coding LOC102024186 cytochrome P450 11B2, mitochondrial-like NW_004955454 1627309 1662347 + 102024186 AGCD01044977;XM_013520011 XP_013375465 MODEL 9057820 ncrna LOC102007431 uncharacterized LOC102007431 NW_004955482 3993841 3998952 + 102007431 AGCD01057278;GBDI01245685;XR_001231001 MODEL 8978016 ncrna LOC102026696 uncharacterized LOC102026696 NW_004955450 8866786 8871190 + 102026696 AGCD01042579;GBDF01279601;XR_001235833 MODEL 10273533 protein-coding LOC106146333 translation initiation factor IF-2-like NW_004955415 17048030 17048458 + 106146333 AGCD01016408;GBCE01186327;XM_013512099 XP_013367553 MODEL 8750528 protein-coding Phex phosphate regulating endopeptidase X-linked INVOLVED IN bone development (ortholog); bone mineralization (ortholog); cellular response to parathyroid hormone stimulus (ortholog); ASSOCIATED WITH Craniofacial Abnormalities (ortholog); Experimental Colitis (ortholog); Familial Hypophosphatemic Rickets (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955509 2357263 2546802 + 102012111 AGCD01065997;AGCD01065998;AGCD01065999;AGCD01066000;AGCD01066001;AGCD01066002;AGCD01066003;AGCD01066004;GBCE01124064;XM_005407827 XP_005407884 MODEL 8774363 protein-coding Iftap intraflagellar transport associated protein ENCODES a protein that exhibits intraciliary transport particle A binding (ortholog); INVOLVED IN acrosome reaction (ortholog); fertilization (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); cytosol (ortholog) NW_004955422 9804012 9867580 - 102003882 AGCD01022721;AGCD01022722;AGCD01022723;GBCE01133930;XM_005384101;XM_005384102 XP_005384158;XP_005384159 MODEL 39131492 protein-coding TNFAIP8L3 TNF alpha induced protein 8 like 3 8796282 pseudo LOC102015470 60S ribosomal protein L7-like NW_004955450 16063028 16064451 + 102015470 AGCD01042829 MODEL 8711622 pseudo LOC102020690 L-lactate dehydrogenase A chain pseudogene NW_004955428 23400275 23400773 - 102020690 AGCD01028222 MODEL 8959545 protein-coding Xrn2 5'-3' exoribonuclease 2 ENCODES a protein that exhibits 5'-3' exonuclease activity (ortholog); 5'-3' RNA exonuclease activity (ortholog); identical protein binding (ortholog); INVOLVED IN hippocampus development (ortholog); neuron differentiation (ortholog); retina development in camera-type eye (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; ribosome biogenesis pathway; RNA polymerase II transcription termination pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); leiomyosarcoma (ortholog); lung cancer (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955415 29107060 29175374 + 102023586 AGCD01016647;AGCD01016648;AGCD01016649;GBDF01082246;XM_005380952 XP_005381009 MODEL 8847560 protein-coding Tex47 testis expressed 47 NW_004955432 6143294 6144841 - 102019307 AGCD01030810;GBDF01195736;XM_005387981 XP_005388038 MODEL 10390677 pseudo LOC106146575 60S ribosomal protein L17 pseudogene NW_004955485 7787150 7787828 - 106146575 AGCD01058677 MODEL 9017815 ncrna LOC102023885 uncharacterized LOC102023885 NW_004955412 8627116 8640467 - 102023885 AGCD01012720;GBDF01177731;XR_259982 MODEL 10150957 ncrna LOC106146453 uncharacterized LOC106146453 NW_004955480 6545087 6547201 - 106146453 AGCD01056686;XR_001230888 MODEL 8868043 protein-coding Bmi1 BMI1 proto-oncogene, polycomb ring finger ENCODES a protein that exhibits chromatin binding (ortholog); promoter-specific chromatin binding (ortholog); RING-like zinc finger domain binding (ortholog); INVOLVED IN brain development (ortholog); cellular response to dexamethasone stimulus (ortholog); cellular response to interleukin-1 (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); acute pancreatitis (ortholog); chronic pancreatitis (ortholog); FOUND IN cytoplasm (ortholog); heterochromatin (ortholog); nuclear body (ortholog) NW_004955429 6548586 6553730 - 102017361 AGCD01028551;GBDK01001879;GBDK01001881;XM_013515495 XP_013370949 MODEL 8755290 protein-coding LOC102027033 uncharacterized LOC102027033 NW_004955613 127297 201939 + 102027033 AGCD01077198;AGCD01077199;AGCD01077200;AGCD01077201;AGCD01077202;GBDK01107488;XM_013510133 XP_013365587 MODEL 8889748 pseudo LOC102009309 ubiquitin-40S ribosomal protein S27a pseudogene NW_004955514 3732965 3733577 - 102009309 AGCD01067111 MODEL 8774884 protein-coding Lcn8 lipocalin 8 INVOLVED IN response to hormone (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog) NW_004955513 4877845 4879978 - 102028452 AGCD01066943;XM_013506582 XP_013362036 MODEL 8853259 protein-coding LOC102004573 protein-glutamine gamma-glutamyltransferase K NW_004955409 36071919 36100923 + 102004573 AGCD01010441;AGCD01010442;AGCD01010443;GBDI01026416;GBDK01309878;XM_005377020 XP_005377077 MODEL 10389651 ncrna LOC106146720 uncharacterized LOC106146720 NW_004955493 706318 709598 - 106146720 AGCD01060860;GBCQ01104172;XR_001231283 MODEL 9002998 protein-coding LOC102010105 leukocyte immunoglobulin-like receptor subfamily B member 4 NW_004955567 1451186 1471664 - 102010105 AGCD01074476;GBCE01047626;XM_013509228 XP_013364682 MODEL 8758696 protein-coding LOC102030144 cytoplasmic tRNA 2-thiolation protein 2-like NW_004955964 4303 11035 - 102030144 AGCD01078759;GBBH01185361;XM_005415155;XM_013510211 XP_005415212;XP_013365665 MODEL 10168797 ncrna LOC106149291 uncharacterized LOC106149291 NW_004955442 15171354 15173401 - 106149291 AGCD01037860;GBDK01200942;XR_001235359 MODEL 8794510 ncrna LOC102003217 uncharacterized LOC102003217 NW_004955410 22917245 22920183 + 102003217 AGCD01011087;GBDF01124788;XR_259857 MODEL 39133747 snorna SNORD39 Small nucleolar RNA SNORD55/SNORD39 8971397 protein-coding LOC102028359 cyclin-dependent kinase 14-like NW_004955402 63201070 63202627 - 102028359 AGCD01001664;XM_005373123;XM_013511670 XP_005373180;XP_013367124 MODEL 8993256 protein-coding Kpna7 karyopherin subunit alpha 7 INVOLVED IN blastocyst development (ortholog); epigenetic regulation of gene expression (ortholog); negative regulation of gene expression (ortholog); ASSOCIATED WITH intellectual disability (ortholog); Oocyte/Zygote/Embryo Maturation Arrest 17 (ortholog); FOUND IN NLS-dependent protein nuclear import complex (ortholog); nucleus (ortholog); spindle (ortholog) NW_004955460 14901350 14931209 - 102006431 AGCD01048764;AGCD01048765;GBDI01140623;XM_005397932 XP_005397989 MODEL 8725810 protein-coding LOC102025288 A-kinase anchor protein 5-like NW_004955543 2222873 2226189 + 102025288 AGCD01071648;AGCD01071649;XM_013508141 XP_013363595 MODEL 8917607 protein-coding Pitpna phosphatidylinositol transfer protein alpha ENCODES a protein that exhibits fatty-acyl-CoA binding (ortholog); lipid binding (ortholog); phosphatidylcholine binding (ortholog); INVOLVED IN axonogenesis (ortholog); phospholipid transport (ortholog); ASSOCIATED WITH chylomicron retention disease (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955481 1611579 1649481 + 102020115 AGCD01056838;AGCD01056839;AGCD01056840;GBDF01118413;XM_005402620 XP_005402677 MODEL 8895869 protein-coding LOC102019692 phospholipid scramblase 1-like NW_004955474 11087013 11105735 + 102019692 AGCD01054609;AGCD01054610;GBDK01263372;XM_005401437 XP_005401494 MODEL 8926611 protein-coding LOC102008966 olfactory receptor 1030-like NW_004955511 1700555 1701493 - 102008966 AGCD01066377;XM_005407972 XP_005408029 MODEL 8864278 protein-coding LOC102021473 lipocalin NW_004955513 4813800 4818133 - 102021473 AGCD01066940;GBBH01225941;XM_005408547 XP_005408604 MODEL 626189144 scarna SCARNA21 small Cajal body-specific RNA 21 10315077 ncrna LOC106150114 uncharacterized LOC106150114 NW_004955465 13362975 13367552 + 106150114 AGCD01050604;GBDF01226308;XR_001236733 MODEL 8872871 protein-coding LOC102012064 olfactory receptor 10C1-like NW_004955458 2337356 2338318 - 102012064 AGCD01047225;XM_005397239 XP_005397296 MODEL 39133668 snrna U4 U4 spliceosomal RNA 8920872 ncrna LOC102012499 uncharacterized LOC102012499 NW_004955407 30651094 30671049 - 102012499 AGCD01007639;GBDJ01066236;XR_001231688;XR_259595 MODEL 8939353 pseudo LOC102003534 stAR-related lipid transfer protein 4 pseudogene NW_004955474 6726759 6727385 + 102003534 AGCD01054486;XM_005401390 MODEL 9051425 protein-coding Espl1 extra spindle pole bodies like 1, separase ENCODES a protein that exhibits cysteine-type peptidase activity (ortholog); peptidase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); homologous chromosome segregation (ortholog); meiosis I (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); breast cancer (ortholog); COVID-19 (ortholog); FOUND IN centrosome (ortholog); nucleoplasm (ortholog); separase-securin complex (ortholog) NW_004955458 530269 553919 + 102017308 AGCD01047132;AGCD01047133;GBDF01082490;XM_005397164;XM_005397165;XM_005397166;XM_005397167 XP_005397221;XP_005397222;XP_005397223;XP_005397224 MODEL 8872891 protein-coding Slc33a2 solute carrier family 33 member 2 FOUND IN plasma membrane (ortholog) NW_004955454 3132761 3139501 + 102013248 AGCD01045057;GBDI01264546;XM_005395914;XM_005395915;XM_005395916;XM_005395917;XM_013520084 XP_005395971;XP_005395972;XP_005395973;XP_005395974;XP_013375538 MODEL 8935934 protein-coding Ndufb7 NADH:ubiquinone oxidoreductase subunit B7 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); ASSOCIATED WITH depressive disorder (ortholog); mitochondrial metabolism disease (ortholog); Nuclear Type Mitochondrial Complex I Deficiency 39 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955415 33138888 33142663 - 102018088 AGCD01016752;GBDI01373385;XM_005381108 XP_005381165 MODEL 8849395 pseudo LOC102024188 biogenesis of lysosome-related organelles complex 1 subunit 1 pseudogene NW_004955454 2557743 2558120 + 102024188 AGCD01045023;XM_005396109 MODEL 8779096 pseudo LOC102007433 olfactory receptor 2T10-like NW_004955418 29702702 29708070 - 102007433 AGCD01019480 MODEL 8792629 protein-coding Paip2 poly(A) binding protein interacting protein 2 ENCODES a protein that exhibits mRNA binding (ortholog); translation repressor activity (ortholog); INVOLVED IN memory (ortholog); negative regulation of translation (ortholog); negative regulation of translational initiation (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); FOUND IN cytoplasm (ortholog) NW_004955418 1189822 1208559 - 102021556 AGCD01018712;GBDF01005070;XM_005382081 XP_005382138 MODEL 10341565 ncrna LOC106148096 uncharacterized LOC106148096 NW_004955415 27649375 27663691 - 106148096 AGCD01016633;GBCC01009918;XR_001233241;XR_001233242;XR_001233243;XR_001233244 MODEL 8743905 pseudo LOC102029428 eukaryotic translation initiation factor 3 subunit E-like NW_004955430 17631489 17633829 - 102029428 AGCD01029669;AGCD01029670 MODEL 9011515 protein-coding Siglec1 sialic acid binding Ig like lectin 1 ENCODES a protein that exhibits virion binding (ortholog); INVOLVED IN clathrin-dependent endocytosis (ortholog); clathrin-dependent endocytosis of virus by host cell (ortholog); negative regulation of phagocytosis (ortholog); ASSOCIATED WITH Human Influenza (ortholog); FOUND IN early endosome (ortholog); endocytic vesicle (ortholog); late endosome (ortholog) NW_004955415 14539284 14560614 - 102028630 AGCD01016300;GBBH01214194;XM_005380797;XR_001233251 XP_005380854 MODEL 8949683 protein-coding Poll DNA polymerase lambda ENCODES a protein that exhibits 5'-deoxyribose-5-phosphate lyase activity (ortholog); DNA polymerase activity (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN base-excision repair, gap-filling (ortholog); DNA biosynthetic process (ortholog); double-strand break repair via homologous recombination (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; FOUND IN chromosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955485 8691886 8700681 + 102025467 AGCD01058724;GBDJ01225502;XM_005403869;XM_005403870;XM_013504091 XP_005403926;XP_005403927;XP_013359545 MODEL 8861722 protein-coding LOC102018136 myeloid cell surface antigen CD33-like NW_004955559 971745 982328 - 102018136 AGCD01073623;AGCD01073624;AGCD01073625;GBDJ01063533;XM_013508946 XP_013364400 MODEL 8952633 pseudo LOC102006337 peptidyl-prolyl cis-trans isomerase G pseudogene NW_004955414 2350960 2358590 - 102006337 AGCD01014790;AGCD01014791;AGCD01014792 MODEL 8966320 protein-coding LOC102025623 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like NW_004955439 11894749 11918648 + 102025623 AGCD01035925;AGCD01035926;AGCD01035927;XM_013517303 XP_013372757 MODEL 10380323 protein-coding Tex48 testis expressed 48 NW_004955419 12969338 12982474 + 106148269 AGCD01019989;AGCD01019990;GBDF01003927;XM_013513086;XM_013513087;XM_013513088;XM_013513089;XM_013513090 XP_013368540;XP_013368541;XP_013368542;XP_013368543;XP_013368544 MODEL 8907953 protein-coding LOC102023888 histone H2A type 2-A NW_004955413 864605 865008 - 102023888 AGCD01013492;GBDF01004921;GBDJ01004178;XM_005378714 XP_005378771 MODEL 8935616 protein-coding LOC102005976 sialic acid-binding Ig-like lectin 10 NW_004955558 999418 1002833 + 102005976 AGCD01073409;AGCD01073410;GBDI01356195;GBDJ01063531;XM_013508839 XP_013364293 MODEL 8801985 protein-coding Xrra1 X-ray radiation resistance associated 1 INVOLVED IN response to X-ray (ortholog); FOUND IN cytoplasm (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955414 16825118 16893518 + 102004057 AGCD01015225;AGCD01015226;AGCD01015227;GBDF01005769;XM_005379906;XM_005379907;XM_005379909;XM_013511844 XP_005379963;XP_005379964;XP_005379966;XP_013367298 MODEL 10270168 ncrna LOC106147004 uncharacterized LOC106147004 NW_004955511 5899074 5904168 - 106147004 AGCD01066591;GBBH01113046;XR_001231700 MODEL 8731100 pseudo LOC102018531 thioredoxin pseudogene NW_004955547 1523626 1523939 + 102018531 AGCD01072227 MODEL 10222003 pseudo LOC106146334 programmed cell death protein 5 pseudogene NW_004955474 12007935 12009631 - 106146334 AGCD01054644 MODEL 8814827 ncrna LOC102003538 uncharacterized LOC102003538 NW_004955476 203227 208111 + 102003538 AGCD01055192;GBDI01270308;XR_263615 MODEL 10390381 protein-coding LOC106149292 uncharacterized LOC106149292 NW_004955442 14213751 14217945 - 106149292 AGCD01037806;GBDJ01368243;XM_013517698 XP_013373152 MODEL 8768717 protein-coding Trub2 TruB pseudouridine synthase family member 2 ENCODES a protein that exhibits pseudouridine synthase activity (ortholog); tRNA pseudouridine(55) synthase activity (ortholog); INVOLVED IN mitochondrial tRNA pseudouridine synthesis (ortholog); mRNA pseudouridine synthesis (ortholog); positive regulation of mitochondrial translation (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); ribonucleoprotein granule (ortholog) NW_004955570 826776 837116 - 102024393 AGCD01074769;GBDI01220800;XM_005413537 XP_005413594 MODEL 8748109 protein-coding LOC102003218 dimethylaniline monooxygenase [N-oxide-forming] 5-like NW_004955462 10184547 10214181 - 102003218 AGCD01049355;AGCD01049356;AGCD01049357;XM_005398324 XP_005398381 MODEL 8876955 protein-coding Phf1 PHD finger protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); histone H3K36me3 reader activity (ortholog); histone H3K4me3 reader activity (ortholog); INVOLVED IN DNA repair-dependent chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN centrosome (ortholog); ESC/E(Z) complex (ortholog); nucleoplasm (ortholog) NW_004955437 1943049 1947027 + 102005174 AGCD01034245;GBCE01032712;GBDF01089862;XM_013517021 XP_013372475 MODEL 8838552 pseudo LOC102020692 olfactory receptor 1052-like NW_004955511 15838 16740 - 102020692 AGCD01066308 MODEL 8912018 pseudo LOC102015471 deoxynucleotidyltransferase terminal-interacting protein 2 pseudogene NW_004955450 17764164 17765669 - 102015471 AGCD01042884 MODEL 9008032 protein-coding Igbp1 immunoglobulin binding protein 1 ENCODES a protein that exhibits enzyme binding (ortholog); mitogen-activated protein kinase kinase binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN intracellular signal transduction (ortholog); negative regulation of apoptotic signaling pathway (ortholog); negative regulation of stress-activated MAPK cascade (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); corpus callosum agenesis-intellectual disability-coloboma-micrognathia syndrome (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); microtubule (ortholog) NW_004955475 9671162 9694926 + 102020332 AGCD01055069;GBDK01196227;XM_005401610;XM_005401612;XM_005401613;XM_013502864;XM_013502865 XP_005401667;XP_005401669;XP_005401670;XP_013358318;XP_013358319 MODEL 10123566 ncrna LOC106146576 uncharacterized LOC106146576 NW_004955485 7789270 7796245 - 106146576 AGCD01058677;GBCE01062018;XR_001231074 MODEL 10118218 pseudo LOC106146455 pre-mRNA-splicing regulator WTAP-like NW_004955480 8291076 8292530 - 106146455 AGCD01056718 MODEL 9058337 protein-coding LOC102027704 endogenous retrovirus group K member 25 Env polyprotein-like NW_004955613 302866 315575 - 102027704 AGCD01077215;AGCD01077216;AGCD01077217;GBDJ01390175;GBDJ01390177;XM_013510130 XP_013365584 MODEL 8997740 protein-coding Specc1l sperm antigen with calponin homology and coiled-coil domains 1 like ENCODES a protein that exhibits beta-catenin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); adherens junction organization (ortholog); anterior neural tube closure (ortholog); ASSOCIATED WITH cleft palate (ortholog); oblique facial clefting 1 (ortholog); prostate cancer (ortholog); FOUND IN actin cytoskeleton (ortholog); cell-cell junction (ortholog); cytoplasm (ortholog) NW_004955455 7739105 7879489 + 102027269 AGCD01045862;AGCD01045863;AGCD01045864;AGCD01045865;AGCD01045866;GBDF01010265;XM_005396373;XM_005396374;XM_005396375;XM_005396376;XM_013520321 XP_005396430;XP_005396431;XP_005396432;XP_005396433;XP_013375775 MODEL 8872090 protein-coding LOC102008968 olfactory receptor-like protein OLF2 NW_004955511 826804 827742 + 102008968 AGCD01066344;XM_005408212 XP_005408269 MODEL 8853147 protein-coding LOC102027035 olfactory receptor 2M3-like NW_004955630 54635 55582 + 102027035 AGCD01077520;XM_005415033 XP_005415090 MODEL 8771072 pseudo LOC102009311 mitochondrial fission factor pseudogene NW_004955516 2393052 2393940 - 102009311 AGCD01067455 MODEL 9007885 protein-coding Bmp1 bone morphogenetic protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); metalloendopeptidase activity (ortholog); peptidase activity (ortholog); INVOLVED IN positive regulation of cartilage development (ortholog); proteolysis (ortholog); ASSOCIATED WITH Acute Otitis Media (ortholog); genetic disease (ortholog); osteogenesis imperfecta (ortholog); FOUND IN extracellular region (ortholog); vesicle (ortholog) NW_004955403 45660591 45693724 + 102015913 AGCD01002826;GBBH01142618;GBCE01002413;XM_013513783 XP_013369237 MODEL 8823529 protein-coding Lcn9 lipocalin 9 ASSOCIATED WITH Ehlers-Danlos syndrome classic type 1 (ortholog) NW_004955513 4786615 4788768 - 102021159 AGCD01066939;GBDF01055414;XM_005408546 XP_005408603 MODEL 8840774 protein-coding LOC102012500 uncharacterized LOC102012500 NW_004955456 6824286 6831920 + 102012500 AGCD01046378;GBDF01048469;XM_013520512;XR_001236319;XR_001236320 XP_013375966 MODEL 8786960 protein-coding Tex50 testis expressed 50 NW_004955406 13859967 13864308 + 102006539 AGCD01005954;GBDF01003776;XM_005374869;XM_005374870;XM_013520800 XP_005374926;XP_005374927;XP_013376254 MODEL 9039372 protein-coding LOC102030145 DNA dC->dU-editing enzyme APOBEC-3F-like NW_004956932 74 2019 + 102030145 AGCD01080328;GBDK01430000;XM_013510239 XP_013365693 MODEL 616940634 snorna SNORD41 small nucleolar RNA, C/D box 41 8838941 protein-coding LOC102010107 protein bunched, class 1/class 3/D/E isoforms-like NW_004955573 470280 471584 + 102010107 AGCD01074980;AGCD01074981;GBDF01228221;XM_005413775 XP_005413832 MODEL 8803685 protein-coding Srl sarcalumenin INVOLVED IN response to muscle activity involved in regulation of muscle adaptation (ortholog); store-operated calcium entry (ortholog); ASSOCIATED WITH Rubinstein-Taybi syndrome (ortholog) NW_004955442 13200237 13242816 + 102016642 AGCD01037765;AGCD01037766;GBCB01003803;XM_005391314;XM_005391315 XP_005391371;XP_005391372 MODEL 9011500 protein-coding LOC102028361 glycine cleavage system H protein, mitochondrial-like NW_004955402 34577722 34580130 - 102028361 AGCD01000866;XM_005373169 XP_005373226 MODEL 8775681 protein-coding Ndufb8 NADH:ubiquinone oxidoreductase subunit B8 ASSOCIATED WITH acute kidney failure (ortholog); Alzheimer's disease (ortholog); Arsenic Poisoning (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955485 9607781 9613123 + 102008538 AGCD01058774;GBDF01007822;XM_005403905 XP_005403962 MODEL 8771179 ncrna LOC102018535 uncharacterized LOC102018535 NW_004955443 7145804 7158741 + 102018535 AGCD01038273;GBDJ01214408;XR_001235482;XR_001235483 MODEL 8755692 protein-coding Kpnb1 karyopherin subunit beta 1 ENCODES a protein that exhibits enzyme binding (ortholog); Hsp90 protein binding (ortholog); importin-alpha family protein binding (ortholog); INVOLVED IN astral microtubule organization (ortholog); establishment of mitotic spindle localization (ortholog); mitotic chromosome movement towards spindle pole (ortholog); ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); ovarian carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955451 13365881 13398491 - 102016121 AGCD01043472;AGCD01043473;AGCD01043474;GBCB01004358;XM_005394271 XP_005394328 MODEL 9003282 ncrna LOC102019693 uncharacterized LOC102019693 NW_004955416 7298910 7308048 + 102019693 AGCD01016971;AGCD01016972;GBDF01144819;XR_260364 MODEL 8959027 pseudo LOC102029431 ataxin-3-like NW_004955517 2164175 2169623 - 102029431 AGCD01067619;XR_264559 MODEL 8922411 pseudo LOC102003219 calcyclin-binding protein pseudogene NW_004955411 30807769 30808487 + 102003219 AGCD01012264 MODEL 9067189 protein-coding Polm DNA polymerase mu ENCODES a protein that exhibits DNA-directed DNA polymerase activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN B cell differentiation (ortholog); somatic hypermutation of immunoglobulin genes (ortholog); PARTICIPATES IN non-homologous end joining pathway of double-strand break repair; FOUND IN nucleoplasm (ortholog) NW_004955456 7886182 7893800 + 102022672 AGCD01046435;GBDI01125354;XM_005396675;XM_005396676;XM_005396677;XM_005396678;XM_005396679 XP_005396732;XP_005396733;XP_005396734;XP_005396735;XP_005396736 MODEL 8772615 pseudo LOC102012067 high mobility group protein B1 pseudogene NW_004955409 17116938 17117921 - 102012067 AGCD01009766;XR_259785 MODEL 10307972 pseudo LOC106146721 40S ribosomal protein S27-like pseudogene NW_004955493 2180707 2180961 + 106146721 AGCD01060933 MODEL 8888469 protein-coding Espn espin ENCODES a protein that exhibits actin filament binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); locomotory behavior (ortholog); microvillar actin bundle assembly (ortholog); PARTICIPATES IN auditory mechanotransduction pathway; ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 36 (ortholog); Deafness (ortholog); FOUND IN actin cytoskeleton (ortholog); apical ectoplasmic specialization (ortholog); brush border (ortholog) NW_004955486 6130190 6156859 - 102025585 AGCD01059108;AGCD01059109;GBDF01000176;GBDF01000177;XM_013504283 XP_013359737 MODEL 8725146 protein-coding Spef1 sperm flagellar and cilia associated 1 ENCODES a protein that exhibits actin binding (ortholog); microtubule binding (ortholog); INVOLVED IN axonemal central apparatus assembly (ortholog); cilium movement (ortholog); filopodium assembly (ortholog); FOUND IN 9+2 motile cilium (ortholog); apical plasma membrane (ortholog); axonemal central apparatus (ortholog) NW_004955415 14620593 14626049 - 102030067 AGCD01016301;GBDI01001315;XM_005380802;XM_013512284 XP_005380859;XP_013367738 MODEL 8892796 protein-coding Tnfaip8l3 TNF alpha induced protein 8 like 3 ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); phosphatidylinositol transfer activity (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate metabolic process (ortholog); phospholipid transport (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955409 3427332 3451809 + 102025659 AGCD01009241;GBDK01355472;XM_005376653;XM_005376654;XM_005376655;XM_013510325;XR_001232642;XR_001232643;XR_001232644 XP_005376710;XP_005376711;XP_005376712;XP_013365779 MODEL 10348897 ncrna LOC106148097 uncharacterized LOC106148097 NW_004955415 27477968 27478699 + 106148097 AGCD01016632;GBDK01308869;XR_001233245 MODEL 8973541 protein-coding LOC102024194 chymase NW_004955409 35831686 35834710 + 102024194 AGCD01010434;GBCE01119297;XM_005376994;XM_005376995 XP_005377051;XP_005377052 MODEL 8909865 protein-coding Pitpnb phosphatidylinositol transfer protein beta ENCODES a protein that exhibits phosphatidylcholine binding (ortholog); phosphatidylcholine intramembrane carrier activity (ortholog); phosphatidylcholine transfer activity (ortholog); INVOLVED IN in utero embryonic development (ortholog); phospholipid transport (ortholog); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955455 2210019 2275206 - 102021092 AGCD01045590;AGCD01045591;GBCE01075253;XM_005396160;XM_005396161;XM_013520442 XP_005396217;XP_005396218;XP_013375896 MODEL 8826401 protein-coding LOC102003539 protocadherin beta-10 NW_004955415 12555720 12609335 - 102003539 AGCD01016200;AGCD01016201;AGCD01016202;AGCD01016203;AGCD01016204;AGCD01016205;AGCD01016206;GBCE01115691;GBDF01153200;XM_013512254 XP_013367708 MODEL 8894089 protein-coding Siglec15 sialic acid binding Ig like lectin 15 INVOLVED IN regulation of actin cytoskeleton organization (ortholog); regulation of bone resorption (ortholog); regulation of osteoclast development (ortholog); FOUND IN plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955402 31403765 31418954 + 102025196 AGCD01000788;GBCE01055940;XM_013510392 XP_013365846 MODEL 9023434 protein-coding Tsbp1 testis expressed basic protein 1 NW_004955437 830178 915199 - 102007696 AGCD01034169;AGCD01034170;AGCD01034171;AGCD01034172;AGCD01034173;AGCD01034174;GBDF01082664;XM_013516714;XM_013516715;XM_013516716;XM_013516717 XP_013372168;XP_013372169;XP_013372170;XP_013372171 MODEL 39133669 snrna U4 U4 spliceosomal RNA 8770000 protein-coding LOC102026698 butyrophilin subfamily 1 member A1-like NW_004955613 81298 117862 + 102026698 AGCD01077195;AGCD01077196;AGCD01077197;GBDJ01117233;XM_013510132 XP_013365586 MODEL 8802791 ncrna LOC102006338 uncharacterized LOC102006338 NW_004955472 12747044 12750245 - 102006338 AGCD01053814;GBDJ01152684;XR_263575 MODEL 9004443 pseudo LOC102004574 tetratricopeptide repeat protein 37 pseudogene NW_004955409 17034095 17039090 + 102004574 AGCD01009758 MODEL 10086768 ncrna LOC106146577 uncharacterized LOC106146577 NW_004955485 7783812 7788267 + 106146577 AGCD01058676;AGCD01058677;GBCQ01083580;XR_001231075 MODEL 10153349 ncrna LOC106146456 uncharacterized LOC106146456 NW_004955480 9771734 9804734 + 106146456 AGCD01056745;AGCD01056746;GBBH01027348;XR_001230889 MODEL 8716983 pseudo LOC102023895 cytochrome c oxidase subunit 6C-like NW_004955469 7454142 7456205 + 102023895 AGCD01052416 MODEL 9044251 protein-coding LOC102005977 interleukin-6-like NW_004955443 14546872 14547379 + 102005977 AGCD01038517;XM_005392049 XP_005392106 MODEL 8992267 pseudo LOC102003541 60S acidic ribosomal protein P1 pseudogene NW_004955416 7907212 7907681 + 102003541 AGCD01017018;XM_005381274 MODEL 8767658 pseudo LOC102007434 eukaryotic translation initiation factor 1 pseudogene NW_004955419 15211183 15211577 - 102007434 AGCD01020066 MODEL 8910046 protein-coding LOC102027705 olfactory receptor 2T29-like NW_004955630 116435 117382 - 102027705 AGCD01077522;XM_005415035 XP_005415092 MODEL 9054560 protein-coding Slc34a1 solute carrier family 34 member 1 ENCODES a protein that exhibits identical protein binding (ortholog); PDZ domain binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN arsenate ion transmembrane transport (ortholog); bone remodeling (ortholog); calcium ion homeostasis (ortholog); PARTICIPATES IN phosphate transport pathway; ASSOCIATED WITH Acidoses (ortholog); acute kidney failure (ortholog); anti-basement membrane glomerulonephritis (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); brush border membrane (ortholog) NW_004955408 29626775 29640811 + 102024651 AGCD01008765;GBCQ01005308;XM_005376430;XM_005376431;XM_005376432;XM_005376433 XP_005376487;XP_005376488;XP_005376489;XP_005376490 MODEL 8708121 pseudo LOC102025302 zinc finger protein 791 pseudogene NW_004955448 14214649 14216042 - 102025302 AGCD01041628 MODEL 8785537 protein-coding Paip2b poly(A) binding protein interacting protein 2B ENCODES a protein that exhibits mRNA regulatory element binding translation repressor activity (ortholog); INVOLVED IN negative regulation of translational initiation (ortholog) NW_004955424 14157358 14190865 + 102028555 AGCD01024646;AGCD01024647;GBDF01220413;XM_005385602;XM_013514637 XP_005385659;XP_013370091 MODEL 39131509 protein-coding TEX52 testis expressed 52 10293582 pseudo LOC106146335 telomerase protein component 1-like NW_004955474 12418901 12425633 - 106146335 AGCD01054662 MODEL 8762369 ncrna LOC102021474 uncharacterized LOC102021474 NW_004955433 10006841 10023375 + 102021474 AGCD01031621;GBDF01126170;XR_001234700;XR_261577;XR_261578 MODEL 8850449 pseudo LOC102030151 thioredoxin-like protein 4A pseudogene NW_004955406 22884161 22884528 + 102030151 AGCD01006161 MODEL 10098307 ncrna LOC106150116 uncharacterized LOC106150116 NW_004955465 9553523 9567406 + 106150116 AGCD01050492;GBDF01152782;XR_001236734 MODEL 8994665 protein-coding LOC102028362 ribonuclease K3-like NW_004955614 3552 4363 - 102028362 AGCD01077221;XM_005414973 XP_005415030 MODEL 8751534 protein-coding Espnl espin like ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN sensory perception of sound (ortholog); FOUND IN stereocilium tip (ortholog) NW_004955542 2430610 2453738 - 102028235 AGCD01071522;GBBH01227849;XM_005411198 XP_005411255 MODEL 8798793 protein-coding Srm spermidine synthase ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); spermidine synthase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); response to testosterone (ortholog); spermidine biosynthetic process (ortholog); PARTICIPATES IN glycine N-methyltransferase deficiency pathway; homocystinuria pathway; hypermethioninemia pathway; ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); FOUND IN cytosol (ortholog) NW_004955486 2631579 2634779 + 102020015 AGCD01059001;GBDF01048561;GBDJ01081417;XM_005404304 XP_005404361 MODEL 8981930 protein-coding Phf10 PHD finger protein 10 INVOLVED IN embryonic brain development (ortholog); nervous system development (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; FOUND IN npBAF complex (ortholog); nucleoplasm (ortholog) NW_004955411 3911966 3926995 + 102020540 AGCD01011562;GBCB01002453;GBCB01043927;XM_005377636 XP_005377693 MODEL 8808644 pseudo LOC102025626 syntenin-1-like NW_004955442 6781274 6782481 + 102025626 AGCD01037596 MODEL 9067386 protein-coding Ndufb9 NADH:ubiquinone oxidoreductase subunit B9 ASSOCIATED WITH mitochondrial complex I deficiency (ortholog); nuclear type mitochondrial complex I deficiency 24 (ortholog); Weight Gain (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955540 3198140 3203470 + 102009218 AGCD01071336;GBBH01031574;XM_005410945;XM_005410946 XP_005411002;XP_005411003 MODEL 8701743 protein-coding LOC102015473 ATP-dependent zinc metalloprotease YME1L1 NW_004955826 3824 15193 - 102015473 AGCD01078430;AGCD01078431;GBDF01051276;XM_005415123;XM_005415125;XM_013510198 XP_005415180;XP_005415182;XP_013365652 MODEL 8940122 protein-coding LOC102008972 uncharacterized LOC102008972 NW_004955515 4155520 4227819 - 102008972 AGCD01067316;AGCD01067317;GBCE01099088;XM_013506861 XP_013362315 MODEL 10156518 protein-coding LOC106147005 translation initiation factor IF-2-like NW_004955511 2658127 2658431 + 106147005 AGCD01066424;GBDF01210847;XM_013506442 XP_013361896 MODEL 9000818 pseudo LOC102009312 60S ribosomal protein L17 pseudogene NW_004955434 13427369 13427899 + 102009312 AGCD01032402 MODEL 8922317 protein-coding Bmp10 bone morphogenetic protein 10 ENCODES a protein that exhibits growth factor activity (ortholog); hormone activity (ortholog); receptor serine/threonine kinase binding (ortholog); INVOLVED IN activin receptor signaling pathway (ortholog); adult heart development (ortholog); atrial cardiac muscle tissue morphogenesis (ortholog); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); Fibrosis (ortholog); Left Ventricular Hypertrophy (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955424 16124526 16130723 + 102018743 AGCD01024738;XM_005385656 XP_005385713 MODEL 39133381 scarna SCARNA3 small Cajal body-specific RNA 3 8978359 protein-coding LOC102010109 olfactory receptor 1D2-like NW_004955580 1150676 1151682 - 102010109 AGCD01075649;XM_005414224 XP_005414281 MODEL 39131598 snorna SNORD42 Small nucleolar RNA SNORD42 10148732 protein-coding LOC106149293 uncharacterized LOC106149293 NW_004955442 3106485 3125009 + 106149293 AGCD01037496;XM_013517704 XP_013373158 MODEL 8879080 protein-coding LOC102024196 phosphoglycerate mutase 1-like NW_004955462 9673636 9674936 + 102024196 AGCD01049341;XM_013521425 XP_013376879 MODEL 9017765 protein-coding LOC102019695 coatomer subunit gamma-2-like NW_004955479 11135050 11137352 - 102019695 AGCD01056574;GBCC01046014;XM_005402449 XP_005402506 MODEL 8964180 protein-coding Kprp keratinocyte proline rich protein INVOLVED IN desmosome organization (ortholog); epidermis development (ortholog); establishment of skin barrier (ortholog); ASSOCIATED WITH prostate cancer (ortholog) NW_004955592 642559 647030 - 102014099 AGCD01076320;GBCC01008189;XM_005414622 XP_005414679 MODEL 8845116 protein-coding LOC102018539 zinc finger protein 33B-like NW_004955445 10896408 10911266 + 102018539 AGCD01039680;GBDF01291239;XM_005392376 XP_005392433 MODEL 8972534 protein-coding Xtbd1 XRN2 binding domain containing 1 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955408 5581512 5587473 - 102016023 AGCD01008142;AGCD01008143;GBCQ01006641;XM_005376150 XP_005376207 MODEL 8991542 protein-coding Pitpnc1 phosphatidylinositol transfer protein cytoplasmic 1 ENCODES a protein that exhibits phosphatidic acid binding (ortholog); phosphatidic acid transfer activity (ortholog); phosphatidylcholine intramembrane carrier activity (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process (ortholog); phospholipid transport (ortholog); signal transduction (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955478 6607686 6847716 + 102010900 AGCD01055908;AGCD01055909;AGCD01055910;AGCD01055911;AGCD01055912;AGCD01055913;AGCD01055914;AGCD01055915;AGCD01055916;AGCD01055917;GBCE01153754;XM_005402155;XM_013503184 XP_005402212;XP_013358638 MODEL 8931408 ncrna LOC102003223 uncharacterized LOC102003223 NW_004955467 6583158 6595059 - 102003223 AGCD01051417;GBDI01181558;XR_001236858;XR_263342;XR_263343;XR_263344 MODEL 8839720 protein-coding Igdcc3 immunoglobulin superfamily DCC subclass member 3 INVOLVED IN neuromuscular process controlling balance (ortholog) NW_004955450 10087900 10121671 + 102007720 AGCD01042606;AGCD01042607;GBCE01023302;XM_013519046 XP_013374500 MODEL 8827726 protein-coding LOC102027036 selenoprotein K-like NW_004955451 10839662 10840425 + 102027036 AGCD01043333;AY462141;XM_013519284 AAR26540;Q6S9C4;XP_013374738 MODEL 39133670 snrna U4 U4 spliceosomal RNA 8901114 pseudo LOC102026700 uncharacterized LOC102026700 NW_004955629 100524 140494 + 102026700 AGCD01077508;AGCD01077509;AGCD01077510;AGCD01077511 MODEL 10372004 protein-coding LOC106146722 uncharacterized LOC106146722 NW_004955493 3363795 3365539 - 106146722 AGCD01060990;AGCD01060991;GBBH01048985;GBDK01132974;XM_013504871 XP_013360325 MODEL 10353058 ncrna LOC106146457 uncharacterized LOC106146457 NW_004955480 9995580 10013863 + 106146457 AGCD01056752;AGCD01056753;GBDF01116491;XR_001230891 MODEL 8754720 pseudo LOC102003544 arfaptin-1 pseudogene NW_004955416 645573 646813 - 102003544 AGCD01016816 MODEL 8831598 protein-coding Poln DNA polymerase nu ENCODES a protein that exhibits cyclin binding (ortholog); DNA polymerase activity (ortholog); DNA-directed DNA polymerase activity (ortholog); INVOLVED IN double-strand break repair via homologous recombination (ortholog); interstrand cross-link repair (ortholog); translesion synthesis (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955514 1214867 1342172 - 102022319 AGCD01067041;AGCD01067042;AGCD01067043;AGCD01067044;AGCD01067045;AGCD01067046;AGCD01067047;GBDJ01030074;XM_013506823;XM_013506824;XM_013506825;XM_013506826;XM_013506827;XM_013506829 XP_013362277;XP_013362278;XP_013362279;XP_013362280;XP_013362281;XP_013362283 MODEL 8986967 ncrna LOC102012502 uncharacterized LOC102012502 NW_004955456 10052149 10054952 + 102012502 AGCD01046517;GBDF01261841;XR_262892 MODEL 9008640 ncrna LOC102005978 uncharacterized LOC102005978 NW_004955445 8848190 8852122 - 102005978 AGCD01039616;GBBH01088001;XR_001235594 MODEL 8793634 protein-coding Tsc1 TSC complex subunit 1 ENCODES a protein that exhibits ATPase inhibitor activity (ortholog); Hsp70 protein binding (ortholog); Hsp90 protein binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); adaptive immune response (ortholog); adult locomotory behavior (ortholog); PARTICIPATES IN adenosine monophosphate-activated protein kinase (AMPK) signaling pathway; mTOR signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); anterior segment dysgenesis (ortholog); autism spectrum disorder (ortholog); FOUND IN actin filament (ortholog); cell cortex (ortholog); cell projection (ortholog) NW_004955513 2197037 2244992 - 102030108 AGCD01066870;AGCD01066871;GBCE01045723;XM_005408396;XM_005408397;XM_005408399;XM_013506599;XM_013506600;XM_013506601;XM_013506602;XM_013506603 XP_005408453;XP_005408454;XP_005408456;XP_013362053;XP_013362054;XP_013362055;XP_013362056;XP_013362057 MODEL 8828575 protein-coding Phf11 PHD finger protein 11 ASSOCIATED WITH allergic disease (ortholog); asthma (ortholog); atopic dermatitis (ortholog); FOUND IN nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955431 2945119 2974767 + 102025491 AGCD01029942;AGCD01029943;AGCD01029944;GBDJ01072576;XM_005387593 XP_005387650 MODEL 9031390 protein-coding LOC102020693 uncharacterized LOC102020693 NW_004955513 1040402 1043596 + 102020693 AGCD01066838;GBDK01224462;XM_005408359 XP_005408416 MODEL 10294468 ncrna LOC106148098 uncharacterized LOC106148098 NW_004955415 6188799 6251562 - 106148098 AGCD01016012;XR_001233246 MODEL 8810987 pseudo LOC102029433 SH3 domain-binding glutamic acid-rich-like protein pseudogene NW_004955520 66166 72767 - 102029433 AGCD01068003;AGCD01068004 MODEL 8969263 protein-coding Spef2 sperm flagellar and cilia associated 2 INVOLVED IN brain morphogenesis (ortholog); cerebrospinal fluid circulation (ortholog); epithelial cilium movement involved in extracellular fluid movement (ortholog); ASSOCIATED WITH genetic disease (ortholog); primary ciliary dyskinesia (ortholog); schizophrenia (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); Golgi apparatus (ortholog) NW_004955426 20587312 20747034 + 102008012 AGCD01026571;AGCD01026572;AGCD01026573;AGCD01026574;GBDF01125859;XM_005386196;XM_005386198;XM_005386199;XM_013515000;XM_013515001;XR_261209 XP_005386253;XP_005386255;XP_005386256;XP_013370454;XP_013370455 MODEL 8963113 pseudo LOC102030152 tubulin alpha chain-like NW_004955406 38861678 38871206 - 102030152 AGCD01006611 MODEL 10085178 ncrna LOC106146458 uncharacterized LOC106146458 NW_004955480 294071 295789 + 106146458 AGCD01056581;XR_001230892 MODEL 8977620 protein-coding Pak1 p21 (RAC1) activated kinase 1 ENCODES a protein that exhibits collagen binding (ortholog); gamma-tubulin binding (ortholog); identical protein binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); amygdala development (ortholog); branching morphogenesis of an epithelial tube (ortholog); PARTICIPATES IN adenosine signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); Alzheimer's disease (ortholog); brain ischemia (ortholog); FOUND IN actin filament (ortholog); axon (ortholog); cell-cell junction (ortholog) NW_004955414 14365325 14447470 + 102009932 AGCD01015150;GBDF01277307;XM_005379836;XM_005379837;XM_013512033 XP_005379893;XP_005379894;XP_013367487 MODEL 8759518 protein-coding LOC102028365 sodium-dependent glucose transporter 1-like NW_004955744 31261 35561 - 102028365 AGCD01078249;GBCQ01051716;GBDF01111964;XM_013510186 XP_013365640 MODEL 8823307 pseudo LOC102012068 ribose-phosphate pyrophosphokinase 1-like NW_004955409 26469788 26470881 - 102012068 AGCD01010186 MODEL 8751625 pseudo LOC102004575 F-box only protein 9 pseudogene NW_004955461 14590359 14591743 + 102004575 AGCD01049056 MODEL 8855819 protein-coding Lcnl1 lipocalin like 1 ASSOCIATED WITH COVID-19 (ortholog) NW_004955513 5012879 5015482 + 102028323 AGCD01066950;GBDI01208694;XM_005415259 XP_005415316 MODEL 8858926 pseudo LOC102023898 olfactory receptor 52J3-like NW_004955414 20772695 20773601 + 102023898 AGCD01015389 MODEL 8942728 pseudo LOC102025627 solute carrier family 35 member E3 pseudogene NW_004955550 1230170 1235376 + 102025627 AGCD01072557 MODEL 8708504 protein-coding LOC102015474 CSC1-like protein 1 NW_004956265 355 5982 - 102015474 AGCD01079347;GBBH01033680;GBDK01145453;XM_005415187 XP_005415244 MODEL 8737995 pseudo LOC102007436 eukaryotic peptide chain release factor subunit 1 pseudogene NW_004955484 8653605 8660088 + 102007436 AGCD01058393 MODEL 8896866 pseudo LOC102027706 ataxin-3-like NW_004955738 517 24651 + 102027706 AGCD01078240 MODEL 8711088 protein-coding LOC102009319 HLA class II histocompatibility antigen, DRB1-1 beta chain-like NW_004955437 1228243 1262090 - 102009319 AGCD01034197;AGCD01034198;GBDK01061271;XM_013517040;XM_013517041 XP_013372494;XP_013372495 MODEL 39133671 snrna U4 U4 spliceosomal RNA 8974596 pseudo LOC102005982 DCN1-like protein 1 pseudogene NW_004955582 422159 422898 - 102005982 AGCD01075756 MODEL 8887943 protein-coding Tnfrsf11a TNF receptor superfamily member 11a ENCODES a protein that exhibits cytokine binding (ortholog); transmembrane signaling receptor activity (ortholog); tumor necrosis factor receptor activity (ortholog); INVOLVED IN adaptive immune response (ortholog); cellular response to zinc ion starvation (ortholog); circadian temperature homeostasis (ortholog); ASSOCIATED WITH Alveolar Bone Loss (ortholog); autosomal recessive osteopetrosis 7 (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); membrane raft (ortholog) NW_004955402 46242329 46298157 + 102008484 AGCD01001155;GBDK01284418;XM_005373177 XP_005373234 MODEL 8949656 protein-coding Tex52 testis expressed 52 NW_004955429 18376196 18391717 - 102022314 AGCD01028900;GBBH01116653;XM_005387117;XM_005387118;XM_013515472 XP_005387174;XP_005387175;XP_013370926 MODEL 10310682 ncrna LOC106149294 uncharacterized LOC106149294 NW_004955442 3517903 3535767 - 106149294 AGCD01037507;XR_001235365 MODEL 8968169 protein-coding LOC102010112 small proline-rich protein 2F-like NW_004955592 331537 332801 + 102010112 AGCD01076304;GBDI01097716;XM_005414612 XP_005414669 MODEL 10159597 pseudo LOC106150117 talin-2 pseudogene NW_004955406 29598329 29599442 + 106150117 AGCD01006335 MODEL 8704246 protein-coding Siglec5 sialic acid binding Ig like lectin 5 ENCODES a protein that exhibits sialic acid binding (ortholog); INVOLVED IN regulation of endocytosis (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN lysosome (ortholog) NW_004955558 932981 945623 + 102005310 AGCD01073406;AGCD01073407;GBBH01003474;GBDF01009380;XM_013508882 XP_013364336 MODEL 8803754 protein-coding LOC102021482 sperm acrosome membrane-associated protein 4-like NW_004955437 249864 253964 - 102021482 AGCD01034115;GBCE01030987;XM_013516852;XM_013516853;XR_001235059;XR_001235060 XP_013372306;XP_013372307 MODEL 10078636 ncrna LOC106146578 uncharacterized LOC106146578 NW_004955485 7818340 7823762 + 106146578 AGCD01058678;GBDK01380162;XR_001231076;XR_001231077 MODEL 8814673 pseudo LOC102024197 60 kDa heat shock protein, mitochondrial pseudogene NW_004955410 27911219 27913074 + 102024197 AGCD01011228 MODEL 8827158 ncrna LOC102006342 uncharacterized LOC102006342 NW_004955415 25402361 25405667 + 102006342 AGCD01016581;GBDF01097468;XR_260314 MODEL 8939668 pseudo LOC102018140 PDZ and LIM domain protein 1-like NW_004955448 372904 378142 + 102018140 AGCD01041230 MODEL 8957251 protein-coding LOC102010114 vomeronasal type-1 receptor 4-like NW_004955603 478161 479087 + 102010114 AGCD01076848;XM_005414845 XP_005414902 MODEL 8846729 pseudo LOC102025304 high mobility group protein B1 pseudogene NW_004955402 47542016 47542603 + 102025304 AGCD01001190 MODEL 8852190 pseudo LOC102030153 uncharacterized LOC102030153 NW_004955454 9570774 9697422 + 102030153 AGCD01045346;AGCD01045347;AGCD01045348;AGCD01045349 MODEL 8841602 ncrna LOC102018544 uncharacterized LOC102018544 NW_004955577 464682 467971 + 102018544 AGCD01075396;GBCQ01030476;XR_265080 MODEL 10389231 ncrna LOC106146336 uncharacterized LOC106146336 NW_004955474 207984 219478 - 106146336 AGCD01054207;AGCD01054208;XR_001230721 MODEL 8853520 pseudo LOC102012508 ADP-ribosylation factor-like protein 2-binding protein pseudogene NW_004955459 6804477 6804982 + 102012508 AGCD01048085;XR_263017 MODEL 39132027 scarna SCARNA7 small Cajal body-specific RNA 7 8873020 protein-coding Bmp15 bone morphogenetic protein 15 INVOLVED IN ovarian cumulus expansion (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amenorrhea (ortholog); genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytoplasm (ortholog) NW_004955543 2304112 2345376 + 102018029 AGCD01071649;AGCD01071650;GBCE01042542;XM_005411357;XM_005411359;XM_005411360;XM_013508137;XM_013508138;XM_013508139;XM_013508140 XP_005411414;XP_005411416;XP_005411417;XP_013363591;XP_013363592;XP_013363593;XP_013363594 MODEL 10251142 protein-coding Ndufc1 NADH:ubiquinone oxidoreductase subunit C1 FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955428 4343702 4347001 + 106148745 AGCD01027680;GBDF01052293;XM_013515244 XP_013370698 MODEL 9044335 protein-coding Srms src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites ENCODES a protein that exhibits protein tyrosine kinase activity (ortholog); INVOLVED IN peptidyl-tyrosine autophosphorylation (ortholog); peptidyl-tyrosine phosphorylation (ortholog); positive regulation of TORC1 signaling (ortholog); ASSOCIATED WITH Liver Neoplasms (ortholog); neuronal ceroid lipofuscinosis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955528 677332 685903 + 102009417 AGCD01069541;AGCD01069542;GBCE01020325;GBDF01290895;XM_013507512 XP_013362966 MODEL 8804250 protein-coding Pitpnm1 phosphatidylinositol transfer protein membrane associated 1 ENCODES a protein that exhibits calcium ion binding (ortholog); phosphatidic acid binding (ortholog); phosphatidylcholine binding (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate metabolic process (ortholog); phospholipid transport (ortholog); positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cell body (ortholog); cleavage furrow (ortholog); cytosol (ortholog) NW_004955422 17985698 17997204 + 102015532 AGCD01022934;GBDF01046509;GBDI01075310;XM_005384318;XM_005384319;XM_005384320 XP_005384375;XP_005384376;XP_005384377 MODEL 8882025 protein-coding Kptn kaptin, actin binding protein ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to glucose starvation (ortholog); negative regulation of TORC1 signaling (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 41 (ortholog); COVID-19 (ortholog); genetic disease (ortholog); FOUND IN filamentous actin (ortholog); glutamatergic synapse (ortholog); KICSTOR complex (ortholog) NW_004955574 1321356 1329132 - 102012482 AGCD01075174;GBDI01217052;XM_005413878 XP_005413935 MODEL 9023794 protein-coding Xxylt1 xyloside xylosyltransferase 1 ENCODES a protein that exhibits magnesium ion binding (ortholog); manganese ion binding (ortholog); UDP-xylosyltransferase activity (ortholog); INVOLVED IN protein O-linked glycosylation via glucose (ortholog); protein O-linked glycosylation via N-acetyl-galactosamine (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); COVID-19 (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955420 13781391 13921711 + 102025129 AGCD01020930;GBBH01063336;GBCB01101112;XM_013513577 XP_013369031 MODEL 8942995 ncrna LOC102012069 uncharacterized LOC102012069 NW_004955410 7679839 7699275 + 102012069 AGCD01010721;AGCD01010722;GBCE01185810;XR_259825 MODEL 10100046 ncrna LOC106146723 uncharacterized LOC106146723 NW_004955493 5510632 5511237 - 106146723 AGCD01061069;XR_001231288 MODEL 39131599 snorna SNORD42 Small nucleolar RNA SNORD42 9043208 ncrna LOC102015483 uncharacterized LOC102015483 NW_004955409 5938745 5953096 + 102015483 AGCD01009328;AGCD01009329;GBDK01220228;XR_001232610 MODEL 8970017 protein-coding Igdcc4 immunoglobulin superfamily DCC subclass member 4 NW_004955450 10057064 10083484 + 102007393 AGCD01042604;AGCD01042605;GBCB01074217;GBDJ01043120;XM_013518877 XP_013374331 MODEL 8960959 ncrna LOC102023900 uncharacterized LOC102023900 NW_004955414 33247134 33250913 + 102023900 AGCD01015800;GBDF01006488;XR_260228;XR_260229 MODEL 8806369 ncrna LOC102003546 uncharacterized LOC102003546 NW_004955417 24120365 24129898 + 102003546 AGCD01018453;GBDJ01104441;XR_260489 MODEL 8897458 ncrna LOC102020697 uncharacterized LOC102020697 NW_004955432 13281054 13321889 + 102020697 AGCD01031009;AGCD01031010;GBDF01146222;XR_001234643;XR_261526 MODEL 8912778 pseudo LOC102010116 oxysterol-binding protein-related protein 8-like NW_004955648 80516 86972 - 102010116 AGCD01077770 MODEL 8851553 pseudo LOC102009321 MORC family CW-type zinc finger protein 2A pseudogene NW_004955438 6361423 6366279 + 102009321 AGCD01035101 MODEL 8759203 protein-coding Phf12 PHD finger protein 12 ENCODES a protein that exhibits phosphatidylinositol binding (ortholog); transcription corepressor activity (ortholog); transcription corepressor binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); Sin3-type complex (ortholog) NW_004955481 4223803 4268640 + 102016708 AGCD01056932;GBDF01191922;XM_005402698;XM_013503419 XP_005402755;XP_013358873 MODEL 8926086 protein-coding Tsc2 TSC complex subunit 2 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); GTPase activator activity (ortholog); Hsp90 protein binding (ortholog); INVOLVED IN anoikis (ortholog); cellular response to insulin stimulus (ortholog); cellular response to starvation (ortholog); PARTICIPATES IN mitogen activated protein kinase signaling pathway; mTOR signaling pathway; the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH Acute Hepatitis (ortholog); acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); FOUND IN caveola (ortholog); cell projection (ortholog); cytoplasm (ortholog) NW_004955442 15178356 15216978 - 102006398 AGCD01037860;GBDI01113122;XM_005391468;XM_005391470;XM_013517657;XM_013517658;XM_013517660;XM_013517661;XM_013517662 XP_005391525;XP_005391527;XP_013373111;XP_013373112;XP_013373114;XP_013373115;XP_013373116 MODEL 8910677 ncrna LOC102019697 uncharacterized LOC102019697 NW_004955481 6570579 6592910 + 102019697 AGCD01057031;AGCD01057032;GBDK01219721;XR_001230949 MODEL 626189130 scarna SCARNA8 small Cajal body-specific RNA 8 8758056 protein-coding Tnfrsf11b TNF receptor superfamily member 11b ENCODES a protein that exhibits heparan sulfate binding (ortholog); INVOLVED IN extracellular matrix organization (ortholog); negative regulation of bone resorption (ortholog); negative regulation of odontogenesis of dentin-containing tooth (ortholog); ASSOCIATED WITH Alveolar Bone Loss (ortholog); aortic valve stenosis (ortholog); bipolar disorder (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog); signaling receptor complex (ortholog) NW_004955417 24804708 24831338 - 102005255 AGCD01018467;GBDJ01116459;XM_005381906 XP_005381963 MODEL 9000083 pseudo LOC102008973 translationally-controlled tumor protein pseudogene NW_004955516 2157659 2158275 + 102008973 AGCD01067449 MODEL 10261082 protein-coding LOC106147006 uncharacterized LOC106147006 NW_004955511 5643139 5652966 - 106147006 AGCD01066573;GBCE01154526;XM_013506457;XM_013506458;XM_013506459 XP_013361911;XP_013361912;XP_013361913 MODEL 8766398 protein-coding Tex55 testis expressed 55 FOUND IN nucleus (ortholog); sperm flagellum (ortholog) NW_004955427 18905578 18929842 + 102014588 AGCD01027354;AGCD01027355;AGCD01027356;GBDF01049904;XM_005386429;XM_005386430;XM_005386431;XM_005386432;XM_005386433 XP_005386486;XP_005386487;XP_005386488;XP_005386489;XP_005386490 MODEL 8894866 protein-coding Slc34a2 solute carrier family 34 member 2 ENCODES a protein that exhibits phosphate ion binding (ortholog); protein domain specific binding (ortholog); sodium ion binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); intracellular phosphate ion homeostasis (ortholog); phosphate ion transport (ortholog); PARTICIPATES IN phosphate transport pathway; ASSOCIATED WITH Drug-Related Side Effects and Adverse Reactions (ortholog); genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog) NW_004955443 19452373 19467129 - 102019967 AGCD01038626;GBBH01022814;GBDF01193795;XM_013518107 XP_013373561 MODEL 8960366 pseudo LOC102004578 insulin-like peptide INSL6 NW_004955463 1887844 1902130 + 102004578 AGCD01049528 MODEL 8792196 pseudo LOC102026701 ras-related protein Rab-2B pseudogene NW_004955451 10883921 10884975 + 102026701 AGCD01043334 MODEL 40834587 protein-coding LCORL ligand dependent nuclear receptor corepressor like 8708921 protein-coding Polq DNA polymerase theta ENCODES a protein that exhibits 5'-deoxyribose-5-phosphate lyase activity (ortholog); ATP hydrolysis activity (ortholog); chromatin binding (ortholog); INVOLVED IN base-excision repair (ortholog); DNA damage response (ortholog); DNA repair (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hereditary breast ovarian cancer syndrome (ortholog); teratoma (ortholog); FOUND IN chromosome (ortholog); mitochondrial nucleoid (ortholog); nucleoplasm (ortholog) NW_004955427 20779332 20895094 - 102029881 AGCD01027416;AGCD01027417;AGCD01027418;AGCD01027419;AGCD01027420;AGCD01027421;AGCD01027422;AGCD01027423;GBDJ01300677;XM_005386484;XM_013515227;XM_013515228 XP_005386541;XP_013370681;XP_013370682 MODEL 8719979 protein-coding Srp14 signal recognition particle 14 INVOLVED IN protein targeting to ER (ortholog); FOUND IN nucleus (ortholog); signal recognition particle, endoplasmic reticulum targeting (ortholog) NW_004955416 7006240 7009569 - 102013931 AGCD01016961;GBDJ01001152;XM_005381213 XP_005381270 MODEL 9032619 protein-coding LOC102021483 HLA class II histocompatibility antigen, DQ beta 1 chain-like NW_004955437 1393285 1399648 - 102021483 AGCD01034205;GBBH01003753;XM_005389455 XP_005389512 MODEL 8733915 pseudo LOC102025306 zinc finger and BTB domain-containing protein 44 pseudogene NW_004955600 457007 459128 + 102025306 AGCD01076723 MODEL 8942609 ncrna LOC102012071 uncharacterized LOC102012071 NW_004955463 1330958 1377220 - 102012071 AGCD01049509;AGCD01049510;AGCD01049511;AGCD01049512;GBDF01208723;XR_263140 MODEL 8706312 protein-coding LOC102027707 keratin, type I cuticular Ha3-I-like NW_004955451 15735490 15740410 - 102027707 AGCD01043635;AGCD01043636;GBCB01128392;XM_005394396 XP_005394453 MODEL 8939669 pseudo LOC102018549 14-3-3 protein sigma-like NW_004955451 4012131 4013628 + 102018549 AGCD01043087 MODEL 39133672 snrna U4 U4 spliceosomal RNA 9007688 protein-coding LOC102006343 cystatin-C-like NW_004955415 30580664 30583924 - 102006343 AGCD01016666;GBDF01051588;XM_005380974;XR_001233254 XP_005381031 MODEL 8731272 ncrna LOC102029434 uncharacterized LOC102029434 NW_004955434 22374769 22431753 - 102029434 AGCD01032676;AGCD01032677;GBCE01091580;XR_001234820;XR_001234821;XR_001234822;XR_001234823 MODEL 9034222 protein-coding Esr1 estrogen receptor 1 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); ATPase binding (ortholog); beta-catenin binding (ortholog); INVOLVED IN androgen metabolic process (ortholog); antral ovarian follicle growth (ortholog); baculum development (ortholog); PARTICIPATES IN bisphenol A response pathway; estrogen signaling pathway; follicle-stimulating hormone signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Alzheimer's disease (ortholog); Animal Disease Models (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); euchromatin (ortholog) NW_004955439 9588631 9953606 - 102028019 AGCD01035840;AGCD01035841;AGCD01035842;AGCD01035843;AGCD01035844;AGCD01035845;AGCD01035846;GBCB01061195;XM_005390573;XM_005390574;XM_013517315 XP_005390630;XP_005390631;XP_013372769 MODEL 9049061 protein-coding LOC102005985 uncharacterized LOC102005985 NW_004955450 13197296 13199813 + 102005985 AGCD01042729;XM_005393815 XP_005393872 MODEL 10118219 ncrna LOC106146459 uncharacterized LOC106146459 NW_004955480 8335330 8337864 - 106146459 AGCD01056718;XR_001230893 MODEL 10210357 ncrna LOC106150118 uncharacterized LOC106150118 NW_004955465 1221181 1227027 + 106150118 AGCD01050338;XR_001236735;XR_001236736 MODEL 8725882 protein-coding LOC102028369 alanyl-tRNA editing protein Aarsd1 NW_004955451 16692134 16695234 - 102028369 AGCD01043697;AGCD01043698;GBDF01047117;GBDF01047120;XM_013519131 XP_013374585 MODEL 8934841 protein-coding Pak1ip1 PAK1 interacting protein 1 INVOLVED IN cell population proliferation (ortholog); regulation of signal transduction by p53 class mediator (ortholog); ribosomal large subunit biogenesis (ortholog); FOUND IN nucleolus (ortholog) NW_004955465 3635004 3644638 - 102020779 AGCD01050385;GBCB01059756;XM_005398836 XP_005398893 MODEL 8922399 protein-coding LOC102027038 keratin-associated protein 16-1 NW_004955451 15717621 15720354 - 102027038 AGCD01043634;AGCD01043635;GBBH01191461;XM_013519183 XP_013374637 MODEL 8752149 protein-coding LOC102003224 olfactory receptor 151-like NW_004955412 25576967 25577911 + 102003224 AGCD01013160;XM_005378654 XP_005378711 MODEL 8739191 pseudo LOC102024199 eukaryotic translation initiation factor 2 subunit 2 pseudogene NW_004955464 4129161 4130292 + 102024199 AGCD01049984 MODEL 8994890 ncrna LOC102007447 uncharacterized LOC102007447 NW_004955496 3205929 3212240 - 102007447 AGCD01062284;GBCQ01088384;XR_264174 MODEL 9017427 pseudo LOC102030155 collagen alpha-2(I) chain-like NW_004955457 10647871 10684381 + 102030155 AGCD01046956 MODEL 8899453 protein-coding Pitpnm2 phosphatidylinositol transfer protein membrane associated 2 ENCODES a protein that exhibits calcium ion binding (ortholog); lipid carrier activity (ortholog); phosphatidylinositol transfer activity (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process (ortholog); positive regulation of 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate biosynthetic process (ortholog); positive regulation of phospholipid transport (ortholog); FOUND IN cell body (ortholog); cytoplasmic side of plasma membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog) NW_004955482 5670827 5804037 + 102022702 AGCD01057345;AGCD01057346;AGCD01057347;AGCD01057348;GBDF01155373;XM_005403054;XM_005403055;XM_013503659;XM_013503660;XM_013503661 XP_005403111;XP_005403112;XP_013359113;XP_013359114;XP_013359115 MODEL 9002482 protein-coding Krabd1 KRAB domain containing 1 NW_004955420 27971780 27976123 - 102019279 AGCD01021465;GBDF01007889;XM_005383507;XM_013513535;XM_013513536 XP_005383564;XP_013368989;XP_013368990 MODEL 10114075 ncrna LOC106148099 uncharacterized LOC106148099 NW_004955415 21576655 21588599 - 106148099 AGCD01016513;GBDF01114982;XR_001233248 MODEL 8894087 pseudo LOC102023902 40S ribosomal protein S6 pseudogene NW_004955473 3056827 3058745 + 102023902 AGCD01053913 MODEL 8865912 protein-coding LOC102018145 cytochrome P450 4V2 INVOLVED IN fatty acid omega-oxidation (ortholog); ASSOCIATED WITH Bietti crystalline corneoretinal dystrophy (ortholog); Choroideremia (ortholog); corneal dystrophy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955403 22870299 22912221 - 102018145 AGCD01002231;AGCD01002232;AGCD01002233;GBCE01187980;GBDK01126781;XM_005373433 XP_005373490 MODEL 8720449 pseudo LOC102012517 60S ribosomal protein L38 pseudogene NW_004955412 19711838 19712048 + 102012517 AGCD01012971 MODEL 10306315 ncrna LOC106149295 uncharacterized LOC106149295 NW_004955442 3395186 3400246 - 106149295 AGCD01037506;GBDF01164953;XR_001235366 MODEL 8825405 protein-coding Speg striated muscle enriched protein kinase INVOLVED IN cardiac muscle cell development (ortholog); circulatory system development (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH autosomal recessive centronuclear myopathy (ortholog); centronuclear myopathy 5 (ortholog); cerebrotendinous xanthomatosis (ortholog) NW_004955453 13979080 14033718 - 102006206 AGCD01044855;AGCD01044856;AGCD01044857;GBCB01004610;XM_013519790;XM_013519791 XP_013375244;XP_013375245 MODEL 9033470 pseudo LOC102025308 zinc finger CCHC-type and RNA-binding motif-containing protein 1 pseudogene NW_004955451 681864 682532 - 102025308 AGCD01042950 MODEL 8848229 protein-coding Siglecl1 SIGLEC family like 1 NW_004955558 1101532 1116578 - 102014502 AGCD01073415;AGCD01073416;GBDF01190924;GBDF01190934;XM_013508840 XP_013364294 MODEL 9062877 protein-coding Ndufc2 NADH:ubiquinone oxidoreductase subunit C2 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); negative regulation of cellular process (ortholog); negative regulation of non-canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH intellectual disability (ortholog); Nuclear Type Mitochondrial Complex I Deficiency 36 (ortholog); stroke (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955414 13867880 13878040 + 102006118 AGCD01015123;GBDF01236739;XM_005379822 XP_005379879 MODEL 9061886 pseudo LOC102025637 transforming growth factor beta regulator 1 pseudogene NW_004955448 14216099 14216643 - 102025637 AGCD01041628 MODEL 8777023 protein-coding Tsc22d1 TSC22 domain family member 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); negative regulation of hematopoietic stem cell proliferation (ortholog); negative regulation of programmed cell death (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955518 2322566 2451519 - 102010937 AGCD01067775;AGCD01067776;AGCD01067777;AGCD01067778;GBDF01010659;GBDF01010660;XM_005409075 XP_005409132 MODEL 8984092 protein-coding LOC102019700 carbohydrate sulfotransferase 6 NW_004955484 2028332 2038105 + 102019700 AGCD01058079;AGCD01058080;AGCD01058081;GBDF01189982;XM_005403442;XM_005403443;XM_005403444;XM_005403445;XM_013503855;XM_013503856 XP_005403499;XP_005403500;XP_005403501;XP_005403502;XP_013359309;XP_013359310 MODEL 8790459 protein-coding Tnfrsf12a TNF receptor superfamily member 12A INVOLVED IN cell adhesion (ortholog); extrinsic apoptotic signaling pathway (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); Experimental Liver Cirrhosis (ortholog); myocardial infarction (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog); ruffle (ortholog) NW_004955442 14320159 14322146 - 102007817 AGCD01037810;GBCE01031231;XM_005391378 XP_005391435 MODEL 8738558 protein-coding Tex9 testis expressed 9 FOUND IN centriolar satellite (ortholog) NW_004955450 17885148 17942136 - 102015795 AGCD01042891;AGCD01042892;AGCD01042893;AGCD01042894;AGCD01042895;AGCD01042896;GBBH01211747;GBDI01295788;XM_005393900 XP_005393957 MODEL 9058978 pseudo LOC102028370 solute carrier family 25 member 36-like NW_004955403 14440040 14454234 - 102028370 AGCD01081636 MODEL 10141891 ncrna LOC106146724 uncharacterized LOC106146724 NW_004955493 5515369 5526464 + 106146724 AGCD01061069;XR_001231289 MODEL 8831190 protein-coding Lcorl ligand dependent nuclear receptor corepressor like ENCODES a protein that exhibits histone methyltransferase binding (ortholog); INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Birth Weight (ortholog) NW_004955480 6241460 6398022 + 102004706 AGCD01056683;AGCD01056684;GBDF01159377;XM_005402490;XM_005402491;XM_013503311;XM_013503312;XM_013503313;XM_013503314;XM_013503315;XM_013503316;XM_013503317;XM_013503318 XP_005402547;XP_005402548;XP_013358765;XP_013358766;XP_013358767;XP_013358768;XP_013358769;XP_013358770;XP_013358771;XP_013358772 MODEL 8958460 protein-coding Srp19 signal recognition particle 19 ENCODES a protein that exhibits 7S RNA binding (ortholog); ribosome binding (ortholog); RNA binding (ortholog); ASSOCIATED WITH Shwachman-Diamond syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955418 2551533 2558252 - 102010161 AGCD01018773;GBDF01196819;XM_005382144;XM_013512933;XM_013512935 XP_005382201;XP_013368387;XP_013368389 MODEL 8849818 ncrna LOC102009325 uncharacterized LOC102009325 NW_004955442 15855701 15859607 - 102009325 AGCD01037883;GBDF01303907;XR_262159 MODEL 39133673 snrna U4 U4 spliceosomal RNA 8924655 protein-coding Bmp2 bone morphogenetic protein 2 ENCODES a protein that exhibits BMP receptor binding (ortholog); co-receptor binding (ortholog); cytokine activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); aortic valve development (ortholog); atrioventricular canal morphogenesis (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH atrial heart septal defect 1 (ortholog); bone disease (ortholog); Bone Fractures (ortholog); FOUND IN BMP receptor complex (ortholog); cell surface (ortholog); extracellular region (ortholog) NW_004955415 17048374 17058172 + 102018921 AGCD01016408;XM_005380857 XP_005380914 MODEL 8852371 protein-coding Pitpnm3 PITPNM family member 3 ENCODES a protein that exhibits calcium ion binding (ortholog); receptor tyrosine kinase binding (ortholog); ASSOCIATED WITH arteriovenous malformations of the brain (ortholog); cone dystrophy (ortholog); cone-rod dystrophy (ortholog); FOUND IN cell body (ortholog) NW_004955467 11973181 12051388 - 102005789 AGCD01051621;AGCD01051622;AGCD01051623;AGCD01051624;GBDI01024423;XM_005399663;XM_013522224 XP_005399720;XP_013377678 MODEL 10126998 ncrna LOC106146460 uncharacterized LOC106146460 NW_004955406 5005690 5009955 + 106146460 AGCD01005709;GBCQ01130581;XR_001230894;XR_001230898 MODEL 8830370 protein-coding LOC102029440 heat shock 70 kDa protein 1-like ENCODES a protein that exhibits heat shock protein binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN binding of sperm to zona pellucida (ortholog); positive regulation of protein localization to mitochondrion (ortholog); protein refolding (ortholog); ASSOCIATED WITH chronic obstructive pulmonary disease (ortholog); Crohn's disease (ortholog); drug allergy (ortholog); FOUND IN cell body (ortholog); COP9 signalosome (ortholog); cytosol (ortholog) NW_004955437 328193 335852 - 102029440 AGCD01034120;AGCD01034121;GBDF01001114;GBDF01007591;XM_005389389 XP_005389446 MODEL 10184990 ncrna LOC106149296 uncharacterized LOC106149296 NW_004955442 3478744 3492015 - 106149296 AGCD01037507;GBCB01130707;XR_001235367 MODEL 10092721 protein-coding LOC106147007 putative uncharacterized protein WWC2-AS2 NW_004955511 4122090 4122864 - 106147007 AGCD01066493;GBCQ01013517;XM_013506461 XP_013361915 MODEL 8881799 ncrna LOC102004579 uncharacterized LOC102004579 NW_004955411 7502512 7517533 - 102004579 AGCD01011707;GBDF01254531;XR_001232795;XR_259925 MODEL 39132149 snorna SNORD45A small nucleolar RNA, C/D box 45A 9039797 protein-coding Pak2 p21 (RAC1) activated kinase 2 ENCODES a protein that exhibits identical protein binding (ortholog); protein kinase activity (ortholog); protein kinase binding (ortholog); INVOLVED IN adherens junction assembly (ortholog); bicellular tight junction assembly (ortholog); cardiac muscle hypertrophy (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autism spectrum disorder (ortholog); Breast Neoplasms (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955420 12893760 12930955 + 102015204 AGCD01020904;AGCD01020905;GBDF01053291;XM_005383142 XP_005383199 MODEL 8728411 ncrna LOC102015488 uncharacterized LOC102015488 NW_004955464 912810 999951 - 102015488 AGCD01049942;AGCD01049943;GBCB01042127;XR_001236695;XR_001236696;XR_263184;XR_263185 MODEL 8827695 protein-coding LOC102026702 homeobox protein Hox-D3 NW_004955918 6545 12522 - 102026702 AGCD01078665;XM_005415147;XR_265198;XR_265199 XP_005415204 MODEL 8746222 protein-coding Slc34a3 solute carrier family 34 member 3 ENCODES a protein that exhibits sodium:phosphate symporter activity (ortholog); INVOLVED IN intracellular phosphate ion homeostasis (ortholog); phosphate ion transport (ortholog); response to magnesium ion (ortholog); PARTICIPATES IN phosphate transport pathway; ASSOCIATED WITH familial hypocalciuric hypercalcemia (ortholog); genetic disease (ortholog); hereditary hypophosphatemic rickets with hypercalciuria (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); brush border membrane (ortholog) NW_004955513 5228575 5233501 + 102010720 AGCD01066963;GBCQ01002877;XM_005408605;XM_005408606 XP_005408662;XP_005408663 MODEL 10229330 ncrna LOC106146337 uncharacterized LOC106146337 NW_004955474 2179550 2183105 - 106146337 AGCD01054281;GBDF01160295;XR_001230722 MODEL 8819227 pseudo LOC102030156 heterogeneous nuclear ribonucleoprotein H2-like NW_004955408 26051190 26054249 - 102030156 AGCD01008662 MODEL 8931707 ncrna LOC102021485 uncharacterized LOC102021485 NW_004955437 18547542 18548483 - 102021485 AGCD01034802;GBDJ01307924;XR_261893 MODEL 8743973 protein-coding LOC102003547 C-C motif chemokine 2 NW_004955481 8954125 8956004 + 102003547 AGCD01057090;GBCE01054732;XM_005402837 XP_005402894 MODEL 8949575 protein-coding Polr1a RNA polymerase I subunit A ENCODES a protein that exhibits 5'-3' RNA polymerase activity (ortholog); chromatin binding (ortholog); DNA-directed RNA polymerase activity (ortholog); INVOLVED IN negative regulation of protein localization to nucleolus (ortholog); rRNA transcription (ortholog); transcription by RNA polymerase I (ortholog); PARTICIPATES IN nucleotide excision repair pathway; RNA polymerase I transcription pathway; ASSOCIATED WITH acrofacial dysostosis Cincinnati type (ortholog); genetic disease (ortholog); Hypomyelinating Leukodystrophy 27 (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); fibrillar center (ortholog) NW_004955424 1507935 1595068 + 102021143 AGCD01024237;AGCD01024238;AGCD01024239;AGCD01024240;GBDK01177247;XM_005385408;XM_005385411 XP_005385465;XP_005385468 MODEL 9017773 ncrna LOC102020698 uncharacterized LOC102020698 NW_004955433 9297942 9300316 + 102020698 AGCD01031611;GBDF01015799;XR_261572;XR_261573 MODEL 8738804 protein-coding Igf1 insulin like growth factor 1 ENCODES a protein that exhibits growth factor activity (ortholog); hormone activity (ortholog); insulin receptor binding (ortholog); INVOLVED IN activation of protein kinase B activity (ortholog); blood vessel remodeling (ortholog); bone development (ortholog); PARTICIPATES IN altered insulin-like growth factor signaling pathway; cardiovascular system disease pathway; ceramide signaling pathway; ASSOCIATED WITH acoustic neuroma (ortholog); acromegaly (ortholog); acute kidney failure (ortholog); FOUND IN alphav-beta3 integrin-IGF-1-IGF1R complex (ortholog); exocytic vesicle (ortholog); extracellular region (ortholog) NW_004955405 37505830 37582152 - 102004234 AGCD01005457;GBDJ01018907;XM_005374571;XM_013518800;XM_013518804;XM_013518808;XM_013518811;XM_013518813;XM_013518816;XM_013518821 XP_005374628;XP_013374254;XP_013374258;XP_013374262;XP_013374265;XP_013374267;XP_013374270;XP_013374275 MODEL 8951508 protein-coding Krabd3 KRAB domain containing 3 NW_004955491 4784536 4805976 + 102014680 AGCD01060463;AGCD01060464;GBBH01030291;XM_005404754;XM_013504642;XM_013504643;XM_013504644;XM_013504645;XM_013504646;XM_013504647;XM_013504648;XM_013504649;XM_013504650 XP_005404811;XP_013360096;XP_013360097;XP_013360098;XP_013360099;XP_013360100;XP_013360101;XP_013360102;XP_013360103;XP_013360104 MODEL 9031341 ncrna LOC102018551 uncharacterized LOC102018551 NW_004955451 11692981 11705179 - 102018551 AGCD01043363;GBDF01220707;XR_001235941;XR_001235942;XR_262593 MODEL 9045840 protein-coding LOC102005986 cytochrome P450 2B6-like NW_004955642 41045 46562 - 102005986 AGCD01077714;AGCD01077715;GBBH01208704;XM_005415047 XP_005415104 MODEL 8888068 protein-coding Sccpdh saccharopine dehydrogenase (putative) FOUND IN lipid droplet (ortholog); midbody (ortholog); mitochondrion (ortholog) NW_004955406 9582429 9617936 + 102011502 AGCD01005828;AGCD01005829;GBCQ01062688;GBDF01007898;XM_005374793 XP_005374850 MODEL 8974572 protein-coding Esr2 estrogen receptor 2 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); enzyme binding (ortholog); INVOLVED IN amygdala development (ortholog); behavioral fear response (ortholog); brain development (ortholog); PARTICIPATES IN bisphenol A response pathway; estrogen signaling pathway; tamoxifen pharmacodynamics pathway; ASSOCIATED WITH adenocarcinoma (ortholog); adenoma (ortholog); Alzheimer's disease (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); neuronal cell body (ortholog) NW_004955466 5587003 5644765 + 102004260 AGCD01050885;GBDF01079691;XM_005399136;XM_013521918 XP_005399193;XP_013377372 MODEL 10137270 ncrna LOC106146579 uncharacterized LOC106146579 NW_004955485 7811974 7817762 + 106146579 AGCD01058678;GBDK01161343;XR_001231078 MODEL 8972080 protein-coding Xylb xylulokinase ENCODES a protein that exhibits D-xylulokinase activity (ortholog); INVOLVED IN xylulose metabolic process (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog) NW_004955427 25492505 25528674 - 102026893 AGCD01027543;AGCD01027544;GBBH01016241;GBCQ01008840;XM_013515188 XP_013370642 MODEL 8993926 pseudo LOC102003226 ubiquitin-conjugating enzyme E2 G1 pseudogene NW_004955413 33482340 33483687 - 102003226 AGCD01014672 MODEL 8874028 pseudo LOC102024200 phosphoglycerate kinase 1-like NW_004955411 34665490 34723313 - 102024200 AGCD01012414;AGCD01012415 MODEL 8706237 protein-coding Tsc22d2 TSC22 domain family member 2 INVOLVED IN negative regulation of cell cycle (ortholog); response to osmotic stress (ortholog); ASSOCIATED WITH keratoconus (ortholog) NW_004955448 1639463 1678279 + 102024397 AGCD01041265;GBCE01089585;GBDI01261302;XM_013518634 XP_013374088 MODEL 9026929 protein-coding Ndufs1 NADH:ubiquinone oxidoreductase core subunit S1 ENCODES a protein that exhibits electron transfer activity (ortholog); NADH dehydrogenase (ubiquinone) activity (ortholog); INVOLVED IN cellular respiration (ortholog); mitochondrial electron transport, NADH to ubiquinone (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH cystic fibrosis (ortholog); Disease Progression (ortholog); genetic disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog); mitochondrion (ortholog) NW_004955457 8838216 8879059 + 102017100 AGCD01046919;GBDF01051033;XM_005396998 XP_005397055 MODEL 9037542 protein-coding LOC102010123 uncharacterized LOC102010123 NW_004955406 1259242 1295310 - 102010123 AGCD01005629;AGCD01005630;GBCQ01057585;XM_013503029 XP_013358483 MODEL 9004347 pseudo LOC102028371 ubiquitin-conjugating enzyme E2 D3 pseudogene NW_004955451 1524224 1525444 - 102028371 AGCD01042973 MODEL 8924950 ncrna LOC102012073 uncharacterized LOC102012073 NW_004955464 5894847 5895631 - 102012073 AGCD01050015;GBDF01046163;XR_001236693;XR_263202;XR_263203 MODEL 8902238 protein-coding LOC102006347 syncytin-1-like NW_004955417 31573854 31588270 + 102006347 AGCD01018657;GBDF01112288;GBDK01015773;XM_005381976;XM_013512777 XP_005382033;XP_013368231 MODEL 8837727 ncrna LOC102023906 uncharacterized LOC102023906 NW_004955477 1104231 1106691 + 102023906 AGCD01055502;GBDI01036993;XR_001230815;XR_263650 MODEL 8994674 pseudo LOC102030162 keratin, type II cytoskeletal 8-like NW_004955464 5039089 5044349 + 102030162 AGCD01049998 MODEL 8717808 pseudo LOC102008974 DNA primase small subunit pseudogene NW_004955434 12000624 12001975 + 102008974 AGCD01032382 MODEL 9029471 pseudo LOC102012518 mortality factor 4-like protein 2 NW_004955466 3112875 3113758 - 102012518 AGCD01050786 MODEL 9058739 protein-coding LOC102018147 ectonucleoside triphosphate diphosphohydrolase 6-like NW_004955847 889 15804 - 102018147 AGCD01078483;GBCE01185994;GBCE01186006;XM_005415131;XM_005415132;XM_005415133;XM_005415134;XM_013510199 XP_005415188;XP_005415189;XP_005415190;XP_005415191;XP_013365653 MODEL 8937212 ncrna LOC102025311 uncharacterized LOC102025311 NW_004955731 721 6575 - 102025311 AGCD01078225;GBDJ01142499;XR_001232594 MODEL 8892287 protein-coding Lcp1 lymphocyte cytosolic protein 1 ENCODES a protein that exhibits actin filament binding (ortholog); GTPase binding (ortholog); identical protein binding (ortholog); INVOLVED IN actin filament bundle assembly (ortholog); animal organ regeneration (ortholog); cell migration (ortholog); ASSOCIATED WITH Acute Otitis Media; Experimental Liver Cirrhosis (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN actin cytoskeleton (ortholog); actin filament (ortholog); actin filament bundle (ortholog) NW_004955518 3815181 3863440 - 102019425 AGCD01067810;AGCD01067811;GBCE01054671;XM_005409099 XP_005409156 MODEL 8816087 ncrna LOC102027039 uncharacterized LOC102027039 NW_004955404 14974247 14980727 + 102027039 AGCD01003526;AGCD01003527;GBBH01152457;XR_259311 MODEL 8728120 ncrna LOC102007448 uncharacterized LOC102007448 NW_004955426 3095664 3103993 - 102007448 AGCD01026065;GBDI01311716;XR_261183 MODEL 9039962 protein-coding LOC102019702 uncharacterized LOC102019702 NW_004955486 2317123 2335680 + 102019702 AGCD01058995;GBDF01249891;XM_005404303 XP_005404360 MODEL 9018562 protein-coding Bmp2k BMP2 inducible kinase ENCODES a protein that exhibits phosphatase regulator activity (ortholog); protein kinase activity (ortholog); protein serine kinase activity (ortholog); INVOLVED IN regulation of bone mineralization (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog) NW_004955433 3207512 3327688 + 102007147 AGCD01031417;AGCD01031418;AGCD01031419;AGCD01031420;GBDF01286250;XM_013516102 XP_013371556 MODEL 10103896 protein-coding LOC106147008 translation initiation factor IF-2-like NW_004955511 6167882 6177497 - 106147008 AGCD01066598;XM_013506471 XP_013361925 MODEL 8725075 ncrna LOC102027709 uncharacterized LOC102027709 NW_004955404 7575132 7581168 + 102027709 AGCD01003341;GBDF01145467;XR_259300 MODEL 8973596 protein-coding Tnfrsf13b TNF receptor superfamily member 13B INVOLVED IN B cell homeostasis (ortholog); hematopoietic progenitor cell differentiation (ortholog); negative regulation of B cell proliferation (ortholog); PARTICIPATES IN syndecan signaling pathway; ASSOCIATED WITH Brain Injuries (ortholog); common variable immunodeficiency (ortholog); common variable immunodeficiency 1 (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955577 930612 971698 + 102025957 AGCD01075420;AGCD01075421;AGCD01075422;AGCD01075423;AGCD01075424;AGCD01075425;GBBH01208630;GBDJ01195577;XM_013509632;XM_013509634 XP_013365086;XP_013365088 MODEL 8710522 protein-coding Tfam transcription factor A, mitochondrial ENCODES a protein that exhibits chromatin binding (ortholog); heat shock protein binding (ortholog); mitochondrial promoter sequence-specific DNA binding (ortholog); INVOLVED IN mitochondrial respiratory chain complex assembly (ortholog); mitochondrial transcription (ortholog); response to hypoxia (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); Animal Disease Models (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955425 12106506 12121625 + 102009855 AGCD01025499;GBDF01004784;XM_005385914 XP_005385971 MODEL 10091702 protein-coding LOC106146725 RNA-binding protein FUS-like NW_004955493 8017977 8025488 + 106146725 AGCD01061256;GBBH01003802;GBBH01003803;XM_013504882 XP_013360336 MODEL 9051794 protein-coding Phf13 PHD finger protein 13 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin-protein adaptor activity (ortholog); histone H3K9me2/3 reader activity (ortholog); INVOLVED IN chromosome segregation (ortholog); DNA damage response (ortholog); mitotic cell cycle (ortholog); FOUND IN nucleus (ortholog) NW_004955486 6018614 6025473 - 102006668 AGCD01059102;AGCD01059103;GBDF01049621;XM_005404074 XP_005404131 MODEL 10343555 ncrna LOC106150119 uncharacterized LOC106150119 NW_004955465 43436 122875 + 106150119 AGCD01050303;AGCD01050304;XR_001236737 MODEL 10358223 ncrna LOC106146338 uncharacterized LOC106146338 NW_004955474 2345304 2351050 - 106146338 AGCD01054289;GBDF01096615;XR_001230723;XR_001230724 MODEL 8781641 pseudo LOC102020700 eukaryotic peptide chain release factor subunit 1-like NW_004955521 621318 636011 - 102020700 AGCD01068140 MODEL 8706442 protein-coding Ndufs2 NADH:ubiquinone oxidoreductase core subunit S2 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); NADH dehydrogenase activity (ortholog); oxygen sensor activity (ortholog); INVOLVED IN cellular response to oxygen levels (ortholog); gliogenesis (ortholog); mitochondrial ATP synthesis coupled electron transport (ortholog); PARTICIPATES IN doxorubicin pharmacokinetics pathway; ASSOCIATED WITH cardiomyopathy (ortholog); Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955468 12961873 12971278 + 102007000 AGCD01052194;GBCB01088834;XM_005400268 XP_005400325 MODEL 10301230 protein-coding Spegnb SPEG neighbor NW_004955453 13974409 13976490 - 106149770 AGCD01044855;GBCQ01102701;XM_013519765 XP_013375219 MODEL 9060732 ncrna LOC102009328 uncharacterized LOC102009328 NW_004955558 871030 888543 + 102009328 AGCD01073396;AGCD01073397;AGCD01073398;AGCD01073399;GBDF01225099;XR_001232328;XR_001232329 MODEL 39133697 snrna U4 U4 spliceosomal RNA 8765317 protein-coding Polr1b RNA polymerase I subunit B ENCODES a protein that exhibits 5'-3' RNA polymerase activity (ortholog); DNA-directed RNA polymerase activity (ortholog); DNA/RNA hybrid binding (ortholog); INVOLVED IN embryo implantation (ortholog); nucleologenesis (ortholog); rRNA transcription (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH Mandibulofacial Dysostosis (ortholog); Treacher Collins syndrome (ortholog); Treacher Collins syndrome 4 (ortholog); FOUND IN chromosome (ortholog); fibrillar center (ortholog); nucleolus (ortholog) NW_004955470 1714156 1737749 - 102026311 AGCD01052653;AGCD01052654;GBDI01296356;XM_005400601;XM_005400604 XP_005400658;XP_005400661 MODEL 8776852 pseudo LOC102030168 thioredoxin pseudogene NW_004955466 1180009 1215238 - 102030168 AGCD01050694;AGCD01050695;XR_263274 MODEL 8705710 protein-coding LOC102005997 keratin-associated protein 20-2-like NW_004955407 30123405 30123560 + 102005997 AGCD01007628;XM_005375637 XP_005375694 MODEL 8851188 ncrna LOC102029447 uncharacterized LOC102029447 NW_004955544 341408 342169 - 102029447 AGCD01071701;XR_264864 MODEL 8915277 protein-coding LOC102004582 vomeronasal type-1 receptor 4-like NW_004955465 12768775 12769713 + 102004582 AGCD01050559;XM_005398944 XP_005399001 MODEL 626189176 snorna SNORD45B small nucleolar RNA, C/D box 45B 9027486 pseudo LOC102019705 citrate synthase, mitochondrial pseudogene NW_004955489 236675 239818 - 102019705 AGCD01059787 MODEL 8820774 protein-coding Slc35a1 solute carrier family 35 member A1 ENCODES a protein that exhibits antiporter activity (ortholog); CMP-N-acetylneuraminate transmembrane transporter activity (ortholog); INVOLVED IN CMP-N-acetylneuraminate transmembrane transport (ortholog); N-acetylneuraminate metabolic process (ortholog); ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIf (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); membrane (ortholog) NW_004955411 14443957 14469590 + 102027388 AGCD01011918;AGCD01011919;AGCD01011920;GBDF01017200;XM_005377728;XM_005377729;XM_013510792 XP_005377785;XP_005377786;XP_013366246 MODEL 8729807 protein-coding LOC102021486 uncharacterized LOC102021486 NW_004955538 2766334 2771809 - 102021486 AGCD01071138;AGCD01071139;GBBH01020607;XM_005410822;XM_005410823;XM_013507898 XP_005410879;XP_005410880;XP_013363352 MODEL 9005173 pseudo LOC102027712 zinc finger protein 711-like NW_004955406 38511970 38519130 + 102027712 AGCD01006603 MODEL 8976744 protein-coding Pak3 p21 (RAC1) activated kinase 3 ENCODES a protein that exhibits GTPase binding (ortholog); MAP kinase kinase activity (ortholog); protein kinase activity (ortholog); INVOLVED IN axonogenesis (ortholog); dendrite development (ortholog); dendritic spine development (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); microcephaly (ortholog); FOUND IN endosome (ortholog); glutamatergic synapse (ortholog); postsynaptic density (ortholog) NW_004955490 4538933 4833851 - 102006037 AGCD01060188;AGCD01060189;AGCD01060190;AGCD01060191;GBCE01183154;XM_013504544;XM_013504545;XM_013504546;XM_013504547;XM_013504548;XM_013504549 XP_013359998;XP_013359999;XP_013360000;XP_013360001;XP_013360002;XP_013360003 MODEL 8735435 ncrna LOC102028373 uncharacterized LOC102028373 NW_004955452 8570248 8577109 - 102028373 AGCD01044217;GBDJ01379448;XR_262663 MODEL 8944025 ncrna LOC102012074 uncharacterized LOC102012074 NW_004955411 18978377 19015927 - 102012074 AGCD01012029;AGCD01012030;GBDF01115149;XR_259938 MODEL 8865229 protein-coding Sigmar1 sigma non-opioid intracellular receptor 1 ENCODES a protein that exhibits G protein-coupled opioid receptor activity (ortholog); identical protein binding (ortholog); mu-type opioid receptor binding (ortholog); INVOLVED IN conditioned place preference (ortholog); cyclooxygenase pathway (ortholog); negative regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); amnestic disorder (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955472 1493896 1496377 + 102021872 AGCD01053395;GBDI01070822;XM_005401048 XP_005401105 MODEL 10277531 ncrna LOC106146461 uncharacterized LOC106146461 NW_004955480 8482735 8485124 + 106146461 AGCD01056725;GBDF01077191;XR_001230900 MODEL 8847499 pseudo LOC102018555 mesoderm induction early response protein 1-like NW_004955403 3675122 3683686 + 102018555 AGCD01001771 MODEL 8790732 pseudo LOC102018148 fructose-bisphosphate aldolase A pseudogene NW_004955403 51024231 51025067 - 102018148 AGCD01002985 MODEL 10113423 ncrna LOC106149297 uncharacterized LOC106149297 NW_004955442 12914884 12920681 + 106149297 AGCD01037748;GBDK01017474;XR_001235368 MODEL 8754338 protein-coding Pitrm1 pitrilysin metallopeptidase 1 ENCODES a protein that exhibits metalloendopeptidase activity (ortholog); metallopeptidase activity (ortholog); zinc ion binding (ortholog); INVOLVED IN proteolysis (ortholog); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 30 (ortholog); cerebellar ataxia (ortholog); nicotine dependence (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955421 28010756 28041336 + 102020925 AGCD01022304;AGCD01022305;AGCD01022306;GBCE01076483;GBDF01157422;XM_013513654 XP_013369108 MODEL 10132727 ncrna LOC106148100 uncharacterized LOC106148100 NW_004955415 29100068 29107081 - 106148100 AGCD01016647;GBDF01176715;XR_001233250 MODEL 9002026 protein-coding LOC102025314 keratin-associated protein 4-7-like NW_004955451 15520664 15521510 - 102025314 AGCD01043612;AGCD01043613;XM_013519127 XP_013374581 MODEL 9037052 protein-coding Spem1 spermatid maturation 1 INVOLVED IN flagellated sperm motility (ortholog); sperm individualization (ortholog); spermatogenesis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955467 9503229 9504535 - 102015494 AGCD01051513;GBDJ01195970;XM_005399499;XM_013522043 XP_005399556;XP_013377497 MODEL 8780571 ncrna LOC102003227 uncharacterized LOC102003227 NW_004955469 7027260 7028336 + 102003227 AGCD01052404;GBBH01203178;XR_263433 MODEL 10078118 protein-coding LOC106146580 translation initiation factor IF-2-like NW_004955485 7959959 7961187 + 106146580 AGCD01058681;AGCD01058682;GBDI01216755;GBDJ01028944;XM_013504047 XP_013359501 MODEL 8975176 protein-coding Xylt1 xylosyltransferase 1 ENCODES a protein that exhibits protein xylosyltransferase activity (ortholog); INVOLVED IN cellular response to heat (ortholog); chondroitin sulfate proteoglycan biosynthetic process (ortholog); embryonic skeletal system development (ortholog); ASSOCIATED WITH Desbuquois dysplasia (ortholog); Desbuquois Dysplasia 1 (ortholog); Desbuquois Dysplasia 2 (ortholog); FOUND IN extracellular region (ortholog); Golgi apparatus (ortholog); Golgi cis cisterna (ortholog) NW_004955442 1787338 2042523 + 102030008 AGCD01037453;GBDI01292471;XM_013517878 XP_013373332 MODEL 8824837 protein-coding LOC102015491 tubulin beta-2A chain NW_004955465 10042089 10045394 + 102015491 AGCD01050500;GBDF01189379;XM_005398897 XP_005398954 MODEL 8953714 protein-coding Lcp2 lymphocyte cytosolic protein 2 INVOLVED IN mast cell activation (ortholog); positive regulation of protein kinase activity (ortholog); T cell receptor signaling pathway (ortholog); PARTICIPATES IN Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); immunodeficiency 81 (ortholog); FOUND IN cell-cell junction (ortholog); cytosol (ortholog); plasma membrane raft (ortholog) NW_004955408 23200137 23246032 - 102016238 AGCD01008585;AGCD01008586;GBDI01176434;XM_005376313;XM_013509200;XM_013509206 XP_005376370;XP_013364654;XP_013364660 MODEL 9011433 protein-coding LOC102024203 histone H2A type 2-B FOUND IN nucleoplasm (ortholog) NW_004955413 863965 864451 + 102024203 AGCD01013492;GBBH01014684;XM_005378715 XP_005378772 MODEL 9001346 protein-coding LOC102003548 olfactory receptor 1P1-like NW_004955481 207227 208174 - 102003548 AGCD01056784;XM_005402914 XP_005402971 MODEL 626189160 snorna SNORD46 small nucleolar RNA, C/D box 46 8819676 protein-coding Tsc22d3 TSC22 domain family member 3 ENCODES a protein that exhibits MRF binding (ortholog); INVOLVED IN body fluid secretion (ortholog); negative regulation of activation-induced cell death of T cells (ortholog); negative regulation of skeletal muscle tissue development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hyperinsulinism (ortholog); male infertility (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955490 8177356 8238373 + 102017672 AGCD01060277;GBCE01115007;GBDF01157293;XM_005404695 XP_005404752 MODEL 9036382 protein-coding LOC102025641 olfactory receptor 7G2-like NW_004955600 463207 464166 + 102025641 AGCD01076723;XM_005414812 XP_005414869 MODEL 8789286 pseudo LOC102012529 nicotinamide phosphoribosyltransferase-like NW_004955414 15004805 15007553 + 102012529 AGCD01015167 MODEL 8848668 protein-coding LOC102028375 uncharacterized protein C3orf20-like NW_004955405 31873655 31921161 - 102028375 AGCD01005310;AGCD01005311;AGCD01005312;AGCD01005313;GBDJ01189705;XM_013519489 XP_013374943 MODEL 9033385 pseudo LOC102021495 vacuole membrane protein 1 pseudogene NW_004955446 12582761 12583969 - 102021495 AGCD01040238 MODEL 39133699 snrna U4 U4 spliceosomal RNA 10306993 ncrna LOC106146462 uncharacterized LOC106146462 NW_004955480 8601982 8605940 + 106146462 AGCD01056730;GBCE01177803;XR_001230901 MODEL 8841202 pseudo LOC102029453 sodium/hydrogen exchanger 7 pseudogene NW_004955558 530354 533153 - 102029453 AGCD01073376 MODEL 8839605 protein-coding Srp54 signal recognition particle 54 ENCODES a protein that exhibits 7S RNA binding (ortholog); endoplasmic reticulum signal peptide binding (ortholog); GDP binding (ortholog); INVOLVED IN granulocyte differentiation (ortholog); protein targeting to ER (ortholog); SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition (ortholog); ASSOCIATED WITH genetic disease (ortholog); severe congenital neutropenia 8 (ortholog); Shwachman-Diamond syndrome (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); nuclear speck (ortholog) NW_004955409 25977226 26016351 - 102004905 AGCD01010144;AGCD01010145;AGCD01010146;AGCD01010147;AGCD01010148;GBDK01188091;XM_005376933;XM_005376934 XP_005376990;XP_005376991 MODEL 8936900 pseudo LOC102006348 transcription factor 4 pseudogene NW_004955418 11676381 11678020 + 102006348 AGCD01019007 MODEL 9035035 protein-coding Tnfrsf13c TNF receptor superfamily member 13C INVOLVED IN B cell costimulation (ortholog); B cell homeostasis (ortholog); positive regulation of B cell proliferation (ortholog); ASSOCIATED WITH Brain Injuries (ortholog); common variable immunodeficiency (ortholog); common variable immunodeficiency 2 (ortholog); FOUND IN external side of plasma membrane (ortholog) NW_004955413 27341977 27344009 - 102026848 AGCD01014503;GBBH01166323;XM_005379376;XM_005379377;XM_013511363 XP_005379433;XP_005379434;XP_013366817 MODEL 10077650 protein-coding LOC106146728 translation initiation factor IF-2-like NW_004955493 6372678 6379175 + 106146728 AGCD01061100;GBDI01054341;GBDK01289301;XM_013504894 XP_013360348 MODEL 9038628 pseudo LOC102023907 coatomer subunit delta pseudogene NW_004955478 318751 320471 + 102023907 AGCD01055736;XR_263727 MODEL 8757510 pseudo LOC102015492 guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 pseudogene NW_004955412 25888206 25888471 - 102015492 AGCD01013177 MODEL 8870957 protein-coding Krabd4 KRAB domain containing 4 NW_004955516 1506348 1522765 + 102027329 AGCD01067432;GBCB01109387;XM_005408980;XM_005408981;XM_005408983;XM_013506928;XM_013506929;XM_013506930 XP_005409037;XP_005409038;XP_005409040;XP_013362382;XP_013362383;XP_013362384 MODEL 10331577 protein-coding LOC106146339 protein FAM13A-like NW_004955474 11529541 11592569 + 106146339 AGCD01054625;AGCD01054626;AGCD01054627;AGCD01054628;AGCD01054629;XM_013502722 XP_013358176 MODEL 8728550 pseudo LOC102019707 translationally-controlled tumor protein pseudogene NW_004955492 4311101 4313699 + 102019707 AGCD01060715 MODEL 10381714 ncrna LOC106150120 uncharacterized LOC106150120 NW_004955465 6956471 6961793 + 106150120 AGCD01050449;XR_001236738;XR_001236739 MODEL 9038141 protein-coding Scd5 stearoyl-CoA desaturase 5 ENCODES a protein that exhibits oxidoreductase activity (ortholog); palmitoyl-CoA 9-desaturase activity (ortholog); stearoyl-CoA 9-desaturase activity (ortholog); INVOLVED IN monounsaturated fatty acid biosynthetic process (ortholog); unsaturated fatty acid biosynthetic process (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 79 (ortholog); pneumoconiosis (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955433 6700616 6819782 - 102008137 AGCD01031546;AGCD01031547;AGCD01031548;GBCE01104546;XM_005388247 XP_005388304 MODEL 8941257 pseudo LOC102027714 putative monooxygenase p33MONOX pseudogene NW_004955406 28930291 28930698 + 102027714 AGCD01006315 MODEL 8847126 ncrna LOC102009338 uncharacterized LOC102009338 NW_004955403 20129167 20220568 - 102009338 AGCD01002154;XR_259187 MODEL 8967112 pseudo LOC102027043 protein FAM161A-like NW_004955406 26735159 26736307 + 102027043 AGCD01006263 MODEL 8726453 pseudo LOC102025642 lanC-like protein 1 pseudogene NW_004955450 3209756 3227293 - 102025642 AGCD01042426 MODEL 8949714 protein-coding Esrp1 epithelial splicing regulatory protein 1 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); branching involved in salivary gland morphogenesis (ortholog); epithelial tube branching involved in lung morphogenesis (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 109 (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955417 10813831 10881238 + 102027070 AGCD01018096;AGCD01018097;AGCD01018098;AGCD01018099;AGCD01018100;AGCD01018101;AGCD01018102;AGCD01018103;AGCD01018104;AGCD01018105;GBCE01186588;GBDI01133147;XM_005381812;XM_005381813;XM_005381816;XM_005381817 XP_005381869;XP_005381870;XP_005381873;XP_005381874 MODEL 9014526 pseudo LOC102026704 14-3-3 protein eta pseudogene NW_004956730 1260 3329 - 102026704 AGCD01080083;XM_005415210 MODEL 8730101 ncrna LOC102007453 uncharacterized LOC102007453 NW_004955510 4663031 4720789 - 102007453 AGCD01066268;AGCD01066269;AGCD01066270;GBDF01122818;XR_001231663;XR_001231664;XR_264408 MODEL 8860507 pseudo LOC102030169 5-azacytidine-induced protein 2 pseudogene NW_004955466 5467998 5469634 - 102030169 AGCD01050881 MODEL 8848985 ncrna LOC102010124 uncharacterized LOC102010124 NW_004955406 8915324 8930814 + 102010124 AGCD01005810;GBDF01157210;XR_259486 MODEL 10119407 ncrna LOC106149298 uncharacterized LOC106149298 NW_004955442 7173141 7175860 + 106149298 AGCD01037620;GBBH01216532;XR_001235369;XR_001235370 MODEL 10266419 ncrna LOC106147009 uncharacterized LOC106147009 NW_004955511 6160146 6163938 - 106147009 AGCD01066598;GBBH01213649;XR_001231704 MODEL 10305032 ncrna LOC106148101 uncharacterized LOC106148101 NW_004955415 5402220 5410132 - 106148101 AGCD01015995;GBBH01083177;XR_001233253 MODEL 8755348 protein-coding Igf1r insulin like growth factor 1 receptor ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); identical protein binding (ortholog); insulin binding (ortholog); INVOLVED IN adrenal gland development (ortholog); amyloid-beta clearance (ortholog); animal organ morphogenesis (ortholog); PARTICIPATES IN E-cadherin signaling pathway; insulin-like growth factor signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); adrenocortical carcinoma (ortholog); alcoholic neuropathy (ortholog); FOUND IN alphav-beta3 integrin-IGF-1-IGF1R complex (ortholog); axon (ortholog); caveola (ortholog) NW_004955416 26101090 26382660 - 102029077 AGCD01017594;AGCD01017595;GBDJ01230004;XM_005381615;XM_013512515 XP_005381672;XP_013367969 MODEL 9035015 pseudo LOC102025316 cyclic AMP-dependent transcription factor ATF-2 pseudogene NW_004955404 32070084 32076574 + 102025316 AGCD01004032 MODEL 8969219 ncrna LOC102004585 uncharacterized LOC102004585 NW_004955466 1410513 1420772 - 102004585 AGCD01050705;GBDF01121150;XR_263275 MODEL 8742857 protein-coding Bmp3 bone morphogenetic protein 3 ENCODES a protein that exhibits BMP receptor binding (ortholog); growth factor activity (ortholog); INVOLVED IN negative regulation of ossification (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Tibial Fractures (ortholog); FOUND IN extracellular region (ortholog); vesicle (ortholog) NW_004955433 5194312 5246125 + 102007805 AGCD01031492;AGCD01031493;GBCE01008766;XM_005388497 XP_005388554 MODEL 8881072 protein-coding LOC102003231 protocadherin beta-12 NW_004955415 12598599 12600263 - 102003231 AGCD01016205;GBDF01191900;XM_005381127 XP_005381184 MODEL 8947207 protein-coding Tfap2a transcription factor AP-2 alpha ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN anterior neuropore closure (ortholog); basement membrane organization (ortholog); bone morphogenesis (ortholog); ASSOCIATED WITH amblyopia (ortholog); branchiooculofacial syndrome (ortholog); branchiootorenal syndrome (ortholog); FOUND IN clathrin-coated pit (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955465 3877896 3900259 + 102019254 AGCD01050394;AGCD01050395;AGCD01050396;AGCD01050397;GBBH01228649;GBCQ01030706;XM_013521865;XM_013521866 XP_013377319;XP_013377320 MODEL 8913787 protein-coding Phf14 PHD finger protein 14 ENCODES a protein that exhibits histone binding (ortholog); INVOLVED IN germinal center B cell differentiation (ortholog); lung alveolus development (ortholog); negative regulation of cell population proliferation (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955432 17535222 17807106 + 102030462 AGCD01031127;AGCD01031128;AGCD01031129;GBCQ01064031;XM_013515963;XM_013515964;XM_013515965;XM_013515966;XM_013515967;XM_013515968;XM_013515969;XM_013515970;XM_013515971;XM_013515972;XM_013515973;XM_013515974;XM_013515975;XM_013515976;XM_013515977;XM_013515978;XM_013515979;XM_013515980;XR_001234651 XP_013371417;XP_013371418;XP_013371419;XP_013371420;XP_013371421;XP_013371422;XP_013371423;XP_013371424;XP_013371425;XP_013371426;XP_013371427;XP_013371428;XP_013371429;XP_013371430;XP_013371431;XP_013371432;XP_013371433;XP_013371434 MODEL 8856077 protein-coding LOC102008978 putative HLA class I histocompatibility antigen, alpha chain H NW_004955437 59805 63404 - 102008978 AGCD01034100;GBBH01004597;XM_013516921;XM_013516922;XM_013516923;XM_013516924;XR_001235068;XR_001235069 XP_013372375;XP_013372376;XP_013372377;XP_013372378 MODEL 8909860 ncrna LOC102020706 uncharacterized LOC102020706 NW_004955436 12393166 12395586 - 102020706 AGCD01033840;GBDF01251978;XR_001234971 MODEL 9057280 protein-coding Ndufs3 NADH:ubiquinone oxidoreductase core subunit S3 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); NADH dehydrogenase activity (ortholog); INVOLVED IN mitochondrial electron transport, NADH to ubiquinone (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); reactive oxygen species metabolic process (ortholog); PARTICIPATES IN doxorubicin pharmacokinetics pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); Breast Neoplasms (ortholog); Cardiomegaly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955422 713370 717926 - 102018838 AGCD01022432;GBCE01030985;XM_005383959 XP_005384016 MODEL 8859739 ncrna LOC102023908 uncharacterized LOC102023908 NW_004955416 31588348 31600034 + 102023908 AGCD01017765;GBDF01126921;XR_260445;XR_260446;XR_260447 MODEL 8842804 protein-coding Slc35a2 solute carrier family 35 member A2 ENCODES a protein that exhibits UDP-galactose transmembrane transporter activity (ortholog); INVOLVED IN UDP-galactose transmembrane transport (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIm (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955543 434265 443460 - 102027678 AGCD01071585;GBBH01185436;XM_005411289;XM_013508172;XM_013508173 XP_005411346;XP_013363626;XP_013363627 MODEL 8849679 ncrna LOC102006000 uncharacterized LOC102006000 NW_004955408 27481149 27486049 + 102006000 AGCD01008679;GBDF01076903;XR_259721 MODEL 9021605 protein-coding Pak4 p21 (RAC1) activated kinase 4 ENCODES a protein that exhibits protein kinase activity (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN dendritic spine development (ortholog); negative regulation of endothelial cell apoptotic process (ortholog); negative regulation of triglyceride catabolic process (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH clear cell renal cell carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cell junction (ortholog); cytoplasm (ortholog); plasma membrane (ortholog) NW_004955468 368721 417614 - 102027058 AGCD01051693;AGCD01051694;AGCD01051695;AGCD01051696;GBDK01015461;XM_005399791;XM_005399792 XP_005399848;XP_005399849 MODEL 8833772 protein-coding LOC102012075 cytochrome P450 4A6-like NW_004955464 11526301 11537560 + 102012075 AGCD01050155;GBBH01214054;XM_005398648;XM_013521715 XP_005398705;XP_013377169 MODEL 8863270 protein-coding Polr1c RNA polymerase I and III subunit C INVOLVED IN termination of RNA polymerase III transcription (ortholog); transcription by RNA polymerase III (ortholog); transcription elongation by RNA polymerase I (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH genetic disease (ortholog); Hearing Loss (ortholog); hypomyelinating leukodystrophy 11 (ortholog); FOUND IN cytoplasm (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955437 9346397 9350591 + 102011146 AGCD01034527;GBDJ01006305;XM_005389779 XP_005389836 MODEL 9058979 protein-coding LOC102028379 uncharacterized LOC102028379 NW_004955406 30468619 30470060 + 102028379 AGCD01006368;AGCD01006369;XM_005375469 XP_005375526 MODEL 39133627 snrna U4 U4 spliceosomal RNA 8795640 protein-coding Spem2 SPEM family member 2 NW_004955467 9493708 9500466 - 102014760 AGCD01051513;GBDF01002193;XM_005399496;XM_005399497;XM_013522025 XP_005399553;XP_005399554;XP_013377479 MODEL 8791169 protein-coding Scel sciellin INVOLVED IN embryo development ending in birth or egg hatching (ortholog); epidermis development (ortholog); keratinocyte differentiation (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955404 29619710 29727873 - 102016555 AGCD01003980;AGCD01003981;AGCD01003982;AGCD01003983;AGCD01003984;GBDK01116262;XM_005374153;XM_005374155;XM_005374156;XM_005374157;XM_013516400;XM_013516404;XM_013516405;XM_013516410 XP_005374210;XP_005374212;XP_005374213;XP_005374214;XP_013371854;XP_013371858;XP_013371859;XP_013371864 MODEL 10306998 ncrna LOC106146581 uncharacterized LOC106146581 NW_004955485 4593017 4601047 + 106146581 AGCD01058571;AGCD01058572;XR_001231079 MODEL 9000005 pseudo LOC102003550 lysine--tRNA ligase-like NW_004955418 23372260 23375258 + 102003550 AGCD01019301 MODEL 9047152 protein-coding LOC102029455 uncharacterized LOC102029455 NW_004955443 6555179 6566926 + 102029455 AGCD01038261;XM_013518033 XP_013373487 MODEL 10312542 ncrna LOC106147010 uncharacterized LOC106147010 NW_004955407 29440595 29451767 - 106147010 AGCD01007609;GBDF01266779;XR_001231705 MODEL 8987338 pseudo LOC102024206 serine/Arginine-related protein 53 pseudogene NW_004955468 1620295 1621668 + 102024206 AGCD01051778 MODEL 39133268 snorna SNORD48 small nucleolar RNA, C/D box 48 39131564 protein-coding TNFRSF13C TNF receptor superfamily member 13C 10088543 pseudo LOC106146729 acyl carrier protein, mitochondrial pseudogene NW_004955493 2135112 2144150 - 106146729 AGCD01060927;AGCD01060928 MODEL 8800798 ncrna LOC102018152 uncharacterized LOC102018152 NW_004955452 7664103 7667411 - 102018152 AGCD01044180;GBDI01004050;XR_262660 MODEL 10340643 ncrna LOC106150121 uncharacterized LOC106150121 NW_004955465 3863104 3865488 + 106150121 AGCD01050394;GBDF01158466;XR_001236740 MODEL 8987121 ncrna LOC102018557 uncharacterized LOC102018557 NW_004955405 28168327 28173766 - 102018557 AGCD01005232;GBDF01303388;XR_259405 MODEL 8892476 protein-coding LOC102021499 zinc finger protein 39-like NW_004955581 3067 74785 - 102021499 AGCD01075654;AGCD01075655;AGCD01075656;GBDI01011076;XM_013509735 XP_013365189 MODEL 8979601 pseudo LOC102027046 mimitin, mitochondrial pseudogene NW_004955407 38191290 38193986 - 102027046 AGCD01007799 MODEL 9005175 protein-coding Pitx1 paired like homeodomain 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN branchiomeric skeletal muscle development (ortholog); cartilage development (ortholog); embryonic hindlimb morphogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Carpal Synostosis with Dysplastic Elbow Joints and Brachydactyly (ortholog); clubfoot (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleus (ortholog) NW_004955408 30197374 30202887 - 102029268 AGCD01008801;GBBH01032244;GBDJ01050164;XM_013507081 XP_013362535 MODEL 8843561 ncrna LOC102026705 uncharacterized LOC102026705 NW_004955403 49027732 49030841 + 102026705 AGCD01002934;GBDF01145706;XR_259249 MODEL 8958472 protein-coding Xylt2 xylosyltransferase 2 ENCODES a protein that exhibits magnesium ion binding (ortholog); manganese ion binding (ortholog); protein xylosyltransferase activity (ortholog); INVOLVED IN chondroitin sulfate proteoglycan biosynthetic process (ortholog); glycosaminoglycan biosynthetic process (ortholog); heparan sulfate proteoglycan biosynthetic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); osteogenesis imperfecta (ortholog); polycystic kidney disease (ortholog); FOUND IN extracellular region (ortholog); Golgi apparatus (ortholog) NW_004955451 11347254 11354489 - 102011075 AGCD01043349;GBBH01051841;GBDF01249355;XM_013519097;XM_013519098 XP_013374551;XP_013374552 MODEL 8829884 protein-coding Esrp2 epithelial splicing regulatory protein 2 ENCODES a protein that exhibits mRNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); branching involved in salivary gland morphogenesis (ortholog); epithelial tube branching involved in lung morphogenesis (ortholog); ASSOCIATED WITH cleft lip (ortholog); COVID-19 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955484 8426453 8433902 + 102012434 AGCD01058383;GBCQ01177080;XM_005403591 XP_005403648 MODEL 9065919 ncrna LOC102010129 uncharacterized LOC102010129 NW_004955457 12742119 12748992 + 102010129 AGCD01047026;GBCB01083718;XR_262945 MODEL 8911149 protein-coding LOC102006353 sodium- and chloride-dependent transporter XTRP3A NW_004955420 26159281 26191883 + 102006353 AGCD01021392;GBCE01175467;XM_005383468 XP_005383525 MODEL 8933480 protein-coding Srp68 signal recognition particle 68 ENCODES a protein that exhibits 7S RNA binding (ortholog); protein domain specific binding (ortholog); ribosome binding (ortholog); INVOLVED IN response to xenobiotic stimulus (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); Craniofacial Abnormalities (ortholog); Severe Congenital Neutropenia 10 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955506 6178184 6220255 + 102005824 AGCD01065402;AGCD01065403;GBDF01047361;XM_005407458 XP_005407515 MODEL 10385155 ncrna LOC106146340 uncharacterized LOC106146340 NW_004955474 6999813 7007670 + 106146340 AGCD01054512;GBBH01221611;XR_001230732 MODEL 9025248 pseudo LOC102012538 peroxiredoxin-6-like NW_004955482 9359566 9361203 + 102012538 AGCD01057566 MODEL 9025542 ncrna LOC102027715 uncharacterized LOC102027715 NW_004955407 8189145 8190054 + 102027715 AGCD01006993;GBDF01084180;XR_259559 MODEL 8772045 protein-coding Tsc22d4 TSC22 domain family member 4 INVOLVED IN glucose homeostasis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); neuron cellular homeostasis (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); nucleus (ortholog) NW_004955573 414984 425480 + 102023089 AGCD01074976;AGCD01074977;GBDK01081440;XM_005413727;XM_013509480 XP_005413784;XP_013364934 MODEL 9050733 protein-coding Phf19 PHD finger protein 19 ENCODES a protein that exhibits histone H3K36me3 reader activity (ortholog); histone H3K4me3 reader activity (ortholog); INVOLVED IN epigenetic regulation of gene expression (ortholog); negative regulation of gene expression, epigenetic (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN ESC/E(Z) complex (ortholog); nucleus (ortholog) NW_004955419 7160249 7179323 + 102024678 AGCD01019875;GBCB01002322;GBDI01260665;XM_005382592 XP_005382649 MODEL 8719141 protein-coding LOC102009339 netrin receptor UNC5D-like NW_004955775 2794 4739 - 102009339 AGCD01078325;GBBH01098166;XM_005415109 XP_005415166 MODEL 8815650 pseudo LOC102007454 60 kDa heat shock protein, mitochondrial pseudogene NW_004955429 3122832 3124566 - 102007454 AGCD01028458 MODEL 8990685 ncrna LOC102006003 uncharacterized LOC102006003 NW_004955409 4395307 4403847 + 102006003 AGCD01009288;XR_259753 MODEL 9031116 protein-coding Lct lactase ENCODES a protein that exhibits beta-glucosidase activity (ortholog); cellobiose glucosidase activity (ortholog); galactosylceramidase activity (ortholog); INVOLVED IN cellobiose catabolic process (ortholog); glycosylceramide catabolic process (ortholog); lactose catabolic process (ortholog); PARTICIPATES IN galactose metabolic pathway; galactosemia pathway; lactose degradation pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); colitis (ortholog); congenital lactase deficiency (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); external side of apical plasma membrane (ortholog) NW_004955440 3148730 3197110 - 102009883 AGCD01036236;AGCD01036237;GBDJ01374567;XM_005390764 XP_005390821 MODEL 8720862 protein-coding Tnfrsf14 TNF receptor superfamily member 14 ENCODES a protein that exhibits cytokine binding (ortholog); receptor ligand activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN defense response to Gram-negative bacterium (ortholog); defense response to Gram-positive bacterium (ortholog); negative regulation of adaptive immune memory response (ortholog); ASSOCIATED WITH arteriosclerosis (ortholog); Brain Injuries (ortholog); celiac disease (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog); plasma membrane protein complex (ortholog) NW_004955486 8670182 8684677 - 102005150 AGCD01059153;GBCE01053037;XM_005404162;XM_005404163;XM_013504242;XM_013504243;XM_013504244;XM_013504245;XM_013504246 XP_005404219;XP_005404220;XP_013359696;XP_013359697;XP_013359698;XP_013359699;XP_013359700 MODEL 8723172 protein-coding LOC102030170 putative olfactory receptor 10D4 NW_004955412 24795106 24796044 + 102030170 AGCD01013126;XM_005378407 XP_005378464 MODEL 10203548 ncrna LOC106149299 uncharacterized LOC106149299 NW_004955442 9937513 9942584 + 106149299 AGCD01037694;GBDF01133229;XR_001235371 MODEL 8825183 protein-coding LOC102028381 pollen-specific leucine-rich repeat extensin-like protein 1 NW_004955407 41649265 41650828 + 102028381 AGCD01007875;XM_005375957 XP_005376014 MODEL 8735335 ncrna LOC102025323 uncharacterized LOC102025323 NW_004955456 3093732 3094240 + 102025323 AGCD01046263;XR_262875 MODEL 8833422 ncrna LOC102026710 uncharacterized LOC102026710 NW_004955405 40962834 40990283 + 102026710 AGCD01005539;XR_259456 MODEL 9041182 protein-coding Scfd1 sec1 family domain containing 1 ENCODES a protein that exhibits protein-containing complex binding (ortholog); syntaxin binding (ortholog); INVOLVED IN negative regulation of autophagosome assembly (ortholog); post-Golgi vesicle-mediated transport (ortholog); regulation of ER to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Reperfusion Injury (ortholog); FOUND IN cis-Golgi network (ortholog); Golgi-associated vesicle (ortholog) NW_004955409 29805909 29903208 - 102015293 AGCD01010282;AGCD01010283;GBDJ01181170;XM_005376970;XM_005376971;XM_013510387 XP_005377027;XP_005377028;XP_013365841 MODEL 8914228 protein-coding LOC102015496 neuferricin ENCODES a protein that exhibits heme binding (ortholog); INVOLVED IN positive regulation of neuron differentiation (ortholog); FOUND IN extracellular region (ortholog) NW_004955467 12738072 12760212 - 102015496 AGCD01051658;GBDF01148203;XM_005399697;XM_005399698;XM_013522067;XM_013522069 XP_005399754;XP_005399755;XP_013377521;XP_013377523 MODEL 8846268 protein-coding Sik1 salt inducible kinase 1 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); ATP binding (ortholog); cAMP response element binding protein binding (ortholog); INVOLVED IN anoikis (ortholog); cardiac muscle cell differentiation (ortholog); entrainment of circadian clock by photoperiod (ortholog); ASSOCIATED WITH Cold Injury (ortholog); developmental and epileptic encephalopathy 30 (ortholog); Developmental Disabilities (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955407 38739062 38749293 + 102004242 AGCD01007812;GBBH01061904;GBDK01073494;XM_005375790 XP_005375847 MODEL 9021443 protein-coding LOC102019709 uncharacterized LOC102019709 NW_004955422 29357621 29359088 - 102019709 AGCD01023392;GBBH01220834;XM_005384906;XM_013513878;XM_013513879 XP_005384963;XP_013369332;XP_013369333 MODEL 9045788 protein-coding Bmp4 bone morphogenetic protein 4 ENCODES a protein that exhibits BMP receptor binding (ortholog); chemoattractant activity (ortholog); co-receptor binding (ortholog); INVOLVED IN anatomical structure formation involved in morphogenesis (ortholog); anatomical structure regression (ortholog); angiogenesis (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; glypican signaling pathway; ASSOCIATED WITH ACTH-secreting pituitary adenoma (ortholog); Acute Otitis Media (ortholog); Alzheimer's disease (ortholog); FOUND IN extracellular region (ortholog); vesicle (ortholog) NW_004955409 9432835 9439680 + 102005114 AGCD01009440;AGCD01009441;GBCQ01040326;XM_005376769;XM_005376770 XP_005376826;XP_005376827 MODEL 10267428 ncrna LOC106147011 uncharacterized LOC106147011 NW_004955407 21518852 21525489 + 106147011 AGCD01007366;GBDF01234785;XR_001231706;XR_001231707 MODEL 626189162 snorna SNORD49B small nucleolar RNA, C/D box 49B 9002103 protein-coding Kras KRAS proto-oncogene, GTPase ENCODES a protein that exhibits GDP binding (ortholog); GMP binding (ortholog); GTPase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); canonical NF-kappaB signal transduction (ortholog); cardiac muscle cell proliferation (ortholog); PARTICIPATES IN altered extracellular signal-regulated Raf/Mek/Erk signaling pathway; colorectal cancer pathway; endometrial cancer pathway; ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog) NW_004955413 20298852 20328756 - 102029608 AGCD01014212;GBDF01221210;GBDJ01230660;XM_005379100 XP_005379157 MODEL 8777976 protein-coding LOC102025644 protein Daple-like NW_004955913 809 9862 - 102025644 AGCD01078657;XM_005415145 XP_005415202 MODEL 9001126 ncrna LOC102023911 uncharacterized LOC102023911 NW_004955418 18816750 18823659 - 102023911 AGCD01019182;GBDF01196195;XR_001233491 MODEL 10228827 ncrna LOC106146730 uncharacterized LOC106146730 NW_004955493 4690416 4720083 + 106146730 AGCD01061041;AGCD01061042;GBBH01219210;XR_001231290;XR_001231291 MODEL 10303071 ncrna LOC106146463 uncharacterized LOC106146463 NW_004955480 8542750 8546119 + 106146463 AGCD01056729;XR_001230902 MODEL 8856906 ncrna LOC102012076 uncharacterized LOC102012076 NW_004955412 13025707 13029033 - 102012076 AGCD01012827;GBDF01049222;XR_259987 MODEL 9016022 protein-coding Pak5 p21 (RAC1) activated kinase 5 ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN learning (ortholog); locomotory behavior (ortholog); memory (ortholog); ASSOCIATED WITH congenital myasthenic syndrome 18 (ortholog); developmental and epileptic encephalopathy 12 (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog); nuclear membrane (ortholog) NW_004955415 19509727 19826087 - 102008092 AGCD01016470;AGCD01016471;AGCD01016472;AGCD01016473;AGCD01016474;AGCD01016475;AGCD01016476;AGCD01016477;AGCD01016478;AGCD01016479;AGCD01016480;AGCD01016481;AGCD01016482;GBBH01180023;GBCE01066610;XM_013512104 XP_013367558 MODEL 8962066 protein-coding Polr1d RNA polymerase I and III subunit D INVOLVED IN termination of RNA polymerase III transcription (ortholog); transcription by RNA polymerase III (ortholog); transcription elongation by RNA polymerase I (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH Animal Disease Models (ortholog); genetic disease (ortholog); Hearing Loss (ortholog); FOUND IN nucleus (ortholog); RNA polymerase I complex (ortholog); RNA polymerase III complex (ortholog) NW_004955497 7029556 7030128 + 102015417 AGCD01062655;GBCE01074470;GBDK01141758;XM_005406376 XP_005406433 MODEL 9055522 protein-coding LOC102004594 olfactory receptor 51E1-like NW_004955414 21006945 21009431 + 102004594 AGCD01015401;AGCD01015402;XM_005380490 XP_005380547 MODEL 8723900 ncrna LOC102003232 uncharacterized LOC102003232 NW_004955416 2924029 2929842 + 102003232 AGCD01016863;GBDF01042362;XR_260349;XR_260350;XR_260351 MODEL 10142584 ncrna LOC106146582 uncharacterized LOC106146582 NW_004955485 9310983 9312223 + 106146582 AGCD01058755;GBDF01075398;XR_001231081 MODEL 8777895 protein-coding Pitx2 paired like homeodomain 2 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN anatomical structure morphogenesis (ortholog); animal organ morphogenesis (ortholog); atrial cardiac muscle tissue morphogenesis (ortholog); ASSOCIATED WITH anterior segment dysgenesis (ortholog); anterior segment dysgenesis 1 (ortholog); anterior segment dysgenesis 4 (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955457 15803493 15823193 + 102022050 AGCD01047099;GBCB01023937;XM_005397106;XM_005397107 XP_005397163;XP_005397164 MODEL 8814118 pseudo LOC102003551 CD63 antigen pseudogene NW_004955484 4514735 4515444 - 102003551 AGCD01058216 MODEL 8797466 protein-coding Igf2 insulin like growth factor 2 ENCODES a protein that exhibits growth factor activity (ortholog); insulin receptor binding (ortholog); insulin-like growth factor receptor binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); cellular response to mechanical stimulus (ortholog); embryonic placenta development (ortholog); PARTICIPATES IN insulin-like growth factor signaling pathway; ASSOCIATED WITH acquired immunodeficiency syndrome (ortholog); adrenocortical carcinoma (ortholog); alcohol use disorder (ortholog); FOUND IN extracellular region (ortholog) NW_004955422 13880525 13907963 - 102005482 AGCD01022840;AGCD01022841;GBDK01090861;XM_005384193;XM_013514303;XM_013514304;XM_013514305 XP_005384250;XP_013369757;XP_013369758;XP_013369759 MODEL 8882591 protein-coding Tfap2b transcription factor AP-2 beta ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN aorta morphogenesis (ortholog); collecting duct development (ortholog); distal tubule development (ortholog); ASSOCIATED WITH angle-closure glaucoma (ortholog); Body Weight (ortholog); Char syndrome (ortholog); FOUND IN nucleus (ortholog) NW_004955411 7143095 7171285 - 102003421 AGCD01011697;AGCD01011698;GBCQ01004319;XM_005377662;XM_005377663;XM_013510933;XR_259924 XP_005377719;XP_005377720;XP_013366387 MODEL 8823727 pseudo LOC102029456 LYR motif-containing protein 2 pseudogene NW_004955445 1721874 1722704 - 102029456 AGCD01039345 MODEL 9041720 protein-coding Esrra estrogen related receptor alpha ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN cartilage development (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of cellular response to insulin stimulus (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Breast Neoplasms (ortholog); congestive heart failure (ortholog); FOUND IN cytoplasm (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955422 20768450 20775205 - 102011328 AGCD01023086;GBCB01005642;GBDF01188656;XM_005384600 XP_005384657 MODEL 8730163 pseudo LOC102010130 olfactory receptor 1361-like NW_004955408 1554851 1556907 + 102010130 AGCD01007965 MODEL 9012894 protein-coding Ndufs4 NADH:ubiquinone oxidoreductase subunit S4 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); INVOLVED IN adult behavior (ortholog); adult walking behavior (ortholog); brain development (ortholog); ASSOCIATED WITH brain disease (ortholog); COVID-19 (ortholog); developmental coordination disorder (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955446 13764907 13864824 - 102024733 AGCD01040256;AGCD01040257;AGCD01040258;AGCD01040259;GBDF01053717;XM_005392719 XP_005392776 MODEL 8943317 protein-coding Pak6 p21 (RAC1) activated kinase 6 INVOLVED IN learning (ortholog); locomotory behavior (ortholog); memory (ortholog); ASSOCIATED WITH clear cell renal cell carcinoma (ortholog); Prostatic Neoplasms (ortholog); FOUND IN fibrillar center (ortholog); nucleoplasm (ortholog); postsynaptic density (ortholog) NW_004955416 7190584 7211705 + 102015950 AGCD01016969;AGCD01016970;GBDI01263427;XM_013512644 XP_013368098 MODEL 8956377 protein-coding Slc35a3 solute carrier family 35 member A3 ENCODES a protein that exhibits UDP-galactose transmembrane transporter activity (ortholog); INVOLVED IN UDP-N-acetylglucosamine transmembrane transport (ortholog); ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); Arthrogryposis, Impaired Intellectual Development, and Seizures (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955435 4747981 4774250 + 102003058 AGCD01032850;AGCD01032851;GBDF01225369;XM_013516439 XP_013371893 MODEL 10370781 ncrna LOC106146341 uncharacterized LOC106146341 NW_004955406 42350368 42370050 + 106146341 AGCD01006701;AGCD01006702;AGCD01006703;AGCD01006704;GBCE01031519;XR_001230735 MODEL 8822821 ncrna LOC102021500 uncharacterized LOC102021500 NW_004955449 3631986 3636241 + 102021500 AGCD01041858;GBDF01211884;XR_262486 MODEL 8818807 ncrna LOC102018561 uncharacterized LOC102018561 NW_004955406 37905165 37930172 - 102018561 AGCD01006580;GBDF01063968;XR_001236867 MODEL 8840481 ncrna LOC102027047 uncharacterized LOC102027047 NW_004955408 25619951 25622228 - 102027047 AGCD01008647;GBDF01111119;XR_259717 MODEL 39133628 snrna U4 U4 spliceosomal RNA 8853081 protein-coding Phf2 PHD finger protein 2 ENCODES a protein that exhibits histone H3K4me3 reader activity (ortholog); histone H3K9 demethylase activity (ortholog); histone H4K20 demethylase activity (ortholog); INVOLVED IN negative regulation of rDNA heterochromatin formation (ortholog); protein demethylation (ortholog); transcription initiation-coupled chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Neurodevelopmental Disorders (ortholog); prostate cancer (ortholog); FOUND IN catalytic complex (ortholog); kinetochore (ortholog); nucleolus (ortholog) NW_004955515 4428068 4471642 - 102023288 AGCD01067320;AGCD01067321;GBCB01056324;XM_005408895 XP_005408952 MODEL 10315030 ncrna LOC106148102 uncharacterized LOC106148102 NW_004955415 31589546 31590228 + 106148102 AGCD01016684;GBDF01059426;XR_001233259 MODEL 8835262 ncrna LOC102007455 uncharacterized LOC102007455 NW_004955512 5582577 5590157 - 102007455 AGCD01066771;GBDF01177427;XR_264450 MODEL 8896691 protein-coding LOC102020708 uncharacterized LOC102020708 NW_004955531 2787208 2825362 - 102020708 AGCD01070055;GBDF01261180;XM_005410140 XP_005410197 MODEL 8843617 protein-coding LOC102028386 uncharacterized LOC102028386 NW_004955409 10772499 10801066 + 102028386 AGCD01009482;AGCD01009483;AGCD01009484;AGCD01009485;GBDK01014397;XM_013510076 XP_013365530 MODEL 8856723 protein-coding LOC102006354 small ubiquitin-related modifier 2-like NW_004955491 597140 597413 + 102006354 AGCD01060341;XM_005404728;XM_005404729 XP_005404785;XP_005404786 MODEL 8753776 pseudo LOC102026712 testican-1 pseudogene NW_004955405 30313376 30314432 - 102026712 AGCD01005272 MODEL 8726863 pseudo LOC102018153 protein phosphatase 1A pseudogene NW_004955405 7689040 7690265 - 102018153 AGCD01004721 MODEL 8744261 pseudo LOC102012540 ubiquitin carboxyl-terminal hydrolase 28 pseudogene NW_004955485 2178951 2183590 - 102012540 AGCD01058507;XM_005403918 MODEL 8923697 protein-coding LOC102027718 keratin-associated protein 10-8-like NW_004955407 41587198 41588013 + 102027718 AGCD01007871;XM_013505855 XP_013361309 MODEL 8850125 protein-coding LOC102019713 olfactory receptor 24 NW_004955495 157242 158152 + 102019713 AGCD01061604;AGCD01061605;XM_013505041 XP_013360495 MODEL 8731939 protein-coding Srp72 signal recognition particle 72 ENCODES a protein that exhibits 7S RNA binding (ortholog); ribosome binding (ortholog); signal recognition particle binding (ortholog); ASSOCIATED WITH Bone Marrow Failure Syndrome 1 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); signal recognition particle (ortholog) NW_004955447 14519978 14552758 - 102028144 AGCD01041011;AGCD01041012;AGCD01041013;AGCD01041014;GBDF01007031;XM_005392872 XP_005392929 MODEL 8838914 protein-coding LOC102009342 translation initiation factor IF-2-like NW_004955404 10719070 10720405 + 102009342 AGCD01003391;GBDF01220559;XM_005374052 XP_005374109 MODEL 8830130 protein-coding Ndufs5 NADH:ubiquinone oxidoreductase subunit S5 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955452 16634537 16641344 + 102021835 AGCD01044521;GBDF01303828;XM_005395239;XM_005395240;XM_005395241;XM_005395242 XP_005395296;XP_005395297;XP_005395298;XP_005395299 MODEL 8710766 protein-coding LOC102023912 uncharacterized LOC102023912 NW_004955482 5728073 5735532 - 102023912 AGCD01057346;GBDF01111631;XM_005403059;XR_001230978;XR_001230979 XP_005403116 MODEL 8735666 ncrna LOC102006004 uncharacterized LOC102006004 NW_004955461 3891790 3962423 - 102006004 AGCD01048855;AGCD01048856;AGCD01048857;GBDK01220667;XR_263078 MODEL 9057405 protein-coding Spen spen family transcriptional repressor ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); single-stranded DNA binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); brain disease (ortholog); breast ductal carcinoma (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); transcription repressor complex (ortholog) NW_004955527 2279438 2343263 - 102020046 AGCD01069427;AGCD01069428;AGCD01069429;AGCD01069430;AGCD01069431;GBCB01056802;GBCQ01068573;XM_013507394 XP_013362848 MODEL 9024007 pseudo LOC102008985 60S ribosomal protein L32 pseudogene NW_004955437 1108077 1108584 + 102008985 AGCD01034190 MODEL 10313112 ncrna LOC106146464 uncharacterized LOC106146464 NW_004955480 10182145 10199983 - 106146464 AGCD01056757;GBDF01113864;XR_001230903;XR_001230904;XR_001230905 MODEL 8737051 ncrna LOC102030171 uncharacterized LOC102030171 NW_004955413 2230551 2233298 + 102030171 AGCD01013544;GBDF01251847;XR_260050 MODEL 8966311 pseudo LOC102024211 tetraspanin-12-like NW_004955469 7511965 7512635 - 102024211 AGCD01052417 MODEL 10391227 ncrna LOC106149300 uncharacterized LOC106149300 NW_004955442 14986826 14995339 - 106149300 AGCD01037853;GBDI01024352;XR_001235373;XR_001235374 MODEL 39133629 snrna U4 U4 spliceosomal RNA 8879133 protein-coding LOC102027051 uncharacterized LOC102027051 NW_004955409 8394539 8397962 + 102027051 AGCD01009406;GBDF01189268;GBDF01189269;XM_013510072 XP_013365526 MODEL 8931053 protein-coding Polr1e RNA polymerase I subunit E ENCODES a protein that exhibits RNA polymerase I general transcription initiation factor binding (ortholog); INVOLVED IN nucleolar large rRNA transcription by RNA polymerase I (ortholog); RNA polymerase I preinitiation complex assembly (ortholog); transcription elongation by RNA polymerase I (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; FOUND IN fibrillar center (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955419 28970982 28983862 - 102006779 AGCD01020481;GBDF01224045;XM_005382878 XP_005382935 MODEL 9026371 protein-coding LOC102003238 C-C motif chemokine 2-like NW_004955481 8924855 8926701 - 102003238 AGCD01057090;GBDK01146257;XM_005402836 XP_005402893 MODEL 10163433 ncrna LOC106150122 uncharacterized LOC106150122 NW_004955465 2995380 3037445 + 106150122 AGCD01050366;AGCD01050367;XR_001236741;XR_001236742 MODEL 10317795 ncrna LOC106147012 uncharacterized LOC106147012 NW_004955511 3535929 3538074 - 106147012 AGCD01066466;GBCQ01102170;XR_001231708 MODEL 8981739 protein-coding Scfd2 sec1 family domain containing 2 ASSOCIATED WITH autism spectrum disorder (ortholog) NW_004955447 17341990 17748735 + 102013984 AGCD01041118;AGCD01041119;AGCD01041120;AGCD01041121;AGCD01041122;AGCD01041123;AGCD01041124;AGCD01041125;AGCD01041126;AGCD01041127;AGCD01041128;AGCD01041129;AGCD01041130;AGCD01041131;AGCD01041132;AGCD01041133;AGCD01041134;GBDF01278277;XM_005392914;XM_013518524;XM_013518525;XR_001235725 XP_005392971;XP_013373978;XP_013373979 MODEL 8792407 protein-coding LOC102010135 potassium channel subfamily U member 1 NW_004955463 12558868 12692079 + 102010135 AGCD01049855;AGCD01049856;GBDF01257773;XM_005398473 XP_005398530 MODEL 8789620 protein-coding Tsen15 tRNA splicing endonuclease subunit 15 INVOLVED IN tRNA-type intron splice site recognition and cleavage (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH Developmental Disabilities (ortholog); genetic disease (ortholog); pontocerebellar hypoplasia type 2F (ortholog); FOUND IN tRNA-intron endonuclease complex (ortholog) NW_004955406 22787090 22806231 + 102029824 AGCD01006161;GBDK01323609;XM_005375050 XP_005375107 MODEL 8954942 ncrna LOC102025646 uncharacterized LOC102025646 NW_004955404 4243949 4264198 - 102025646 AGCD01003291;GBDF01221070;XR_001234629;XR_259297 MODEL 8730539 protein-coding Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); mRNA binding (ortholog); INVOLVED IN CRD-mediated mRNA stabilization (ortholog); dendrite arborization (ortholog); gene expression (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); colon adenoma (ortholog); Experimental Neoplasms (ortholog); FOUND IN axon (ortholog); CRD-mediated mRNA stability complex (ortholog); cytoplasm (ortholog) NW_004955451 12312715 12348663 - 102028366 AGCD01043385;AGCD01043386;GBDF01076205;XM_005394222;XM_005394223 XP_005394279;XP_005394280 MODEL 39132955 misc_rna Y_RNA Y RNA 8866145 protein-coding Esrrb estrogen related receptor beta ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cell dedifferentiation (ortholog); cell population proliferation (ortholog); embryonic placenta development (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 35 (ortholog); dilated cardiomyopathy (ortholog); FOUND IN condensed chromosome (ortholog); cytoplasm (ortholog); integrator complex (ortholog) NW_004955438 365375 534086 + 102029663 AGCD01034946;AGCD01034947;AGCD01034948;AGCD01034949;AGCD01034950;AGCD01034951;GBCQ01188054;XM_005390154;XM_013517291;XM_013517292 XP_005390211;XP_013372745;XP_013372746 MODEL 8875293 protein-coding Bmp5 bone morphogenetic protein 5 ENCODES a protein that exhibits BMP receptor binding (ortholog); INVOLVED IN allantois development (ortholog); anterior head development (ortholog); BMP signaling pathway (ortholog); ASSOCIATED WITH Congenital Microtia (ortholog); Meier-Gorlin syndrome (ortholog); FOUND IN extracellular region (ortholog); vesicle (ortholog) NW_004955411 450674 557213 + 102003741 AGCD01011458;AGCD01011459;AGCD01011460;AGCD01011461;GBCE01076623;XM_005377586;XM_013510909 XP_005377643;XP_013366363 MODEL 10330602 ncrna LOC106146731 uncharacterized LOC106146731 NW_004955493 6395542 6397964 + 106146731 AGCD01061101;GBDI01292117;XR_001231292 MODEL 8766946 pseudo LOC102012078 ETS translocation variant 5 pseudogene NW_004955412 6032104 6035073 + 102012078 AGCD01012664 MODEL 8832611 protein-coding Tnfrsf17 TNF receptor superfamily member 17 INVOLVED IN lymphocyte homeostasis (ortholog); ASSOCIATED WITH colon carcinoma (ortholog); COVID-19 (ortholog); multiple myeloma (ortholog) NW_004955442 6626434 6651193 - 102023531 AGCD01037591;AGCD01037592;GBDK01160382;XM_005391151 XP_005391208 MODEL 8771617 pseudo LOC102025325 centrosomal protein of 57 kDa-like NW_004955408 25270112 25367598 + 102025325 AGCD01008636;AGCD01008637;AGCD01008638;AGCD01008639 MODEL 8924647 pseudo LOC102018563 tubulin alpha-1 chain-like NW_004955406 11720895 11730389 + 102018563 AGCD01005894;XM_005375458 MODEL 8985332 ncrna LOC102004595 uncharacterized LOC102004595 NW_004955415 837754 877703 - 102004595 AGCD01015854;AGCD01015855;GBBH01145410;XR_001233209 MODEL 8769007 ncrna LOC102015497 uncharacterized LOC102015497 NW_004955413 9351520 9367102 - 102015497 AGCD01013903;XR_260073 MODEL 10199351 ncrna LOC106146465 uncharacterized LOC106146465 NW_004955480 8228784 8254752 - 106146465 AGCD01056716;GBDJ01174363;XR_001230906;XR_001230907;XR_001230908 MODEL 9012759 ncrna LOC102020709 uncharacterized LOC102020709 NW_004955533 1106138 1115387 - 102020709 AGCD01070343;GBCQ01075651;XR_001232034;XR_264745 MODEL 8832133 protein-coding Tfap2c transcription factor AP-2 gamma ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cell differentiation (ortholog); cerebral cortex development (ortholog); dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis (ortholog); ASSOCIATED WITH microcephaly (ortholog); Stomach Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955445 2626896 2636607 - 102007378 AGCD01039359;AGCD01039360;GBDJ01030904;XM_005392262 XP_005392319 MODEL 8975480 protein-coding Krcc1 lysine rich coiled-coil 1 NW_004955424 812242 825122 + 102013945 AGCD01024209;AGCD01024210;GBCE01101268;XM_005385384;XM_005385385 XP_005385441;XP_005385442 MODEL 9009966 protein-coding Palb2 partner and localizer of BRCA2 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); double-strand break repair via homologous recombination (ortholog); embryonic organ development (ortholog); PARTICIPATES IN nuclear factor, erythroid 2 like 2 signaling pathway; ASSOCIATED WITH anaplastic ependymoma (ortholog); autosomal recessive spinocerebellar ataxia 8 (ortholog); B-lymphoblastic leukemia/lymphoma with ETV6-RUNX1 (ortholog); FOUND IN DNA repair complex (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955493 2149053 2175482 - 102022825 AGCD01060929;AGCD01060930;AGCD01060931;AGCD01060932;GBDF01281087;XM_013504896;XM_013504897 XP_013360350;XP_013360351 MODEL 8769525 protein-coding LOC102006357 cytochrome c oxidase subunit 6A2, mitochondrial ASSOCIATED WITH mitochondrial complex IV deficiency nuclear type 18 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex IV (ortholog) NW_004955493 8261297 8261961 - 102006357 AGCD01061282;GBCB01005316;XM_005405318 XP_005405375 MODEL 8876119 pseudo LOC102027726 coiled-coil domain-containing protein 181 pseudogene NW_004955409 10273583 10278049 + 102027726 AGCD01009464 MODEL 9002802 protein-coding Slc35a4 solute carrier family 35 member A4 INVOLVED IN positive regulation of cellular respiration (ortholog); positive regulation of translation in response to stress (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); mitochondrial inner membrane (ortholog) NW_004955418 114916 116878 - 102030308 AGCD01018668;GBDK01127414;XM_005382020 XP_005382077 MODEL 8891083 protein-coding Lctl lactase like INVOLVED IN lens morphogenesis in camera-type eye (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); FOUND IN brush border (ortholog); endoplasmic reticulum (ortholog) NW_004955450 9127151 9139836 + 102028042 AGCD01042585;GBBH01100376;XM_005393699 XP_005393756 MODEL 10347534 ncrna LOC106148103 uncharacterized LOC106148103 NW_004955415 386912 393271 - 106148103 AGCD01015844;XR_001233260 MODEL 9024008 pseudo LOC102009346 ribosome biogenesis protein BRX1 homolog pseudogene NW_004955453 6480308 6481349 + 102009346 AGCD01044720 MODEL 8999078 ncrna LOC102023913 uncharacterized LOC102023913 NW_004955485 6363515 6367468 + 102023913 AGCD01058616;GBBH01057707;XR_263909 MODEL 8810425 protein-coding Ndufs6 NADH:ubiquinone oxidoreductase subunit S6 INVOLVED IN cellular senescence (ortholog); circulatory system development (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); ASSOCIATED WITH cervical cancer (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955504 893112 903282 + 102009082 AGCD01064831;GBCQ01003517;XM_005407059 XP_005407116 MODEL 8714543 pseudo LOC102007462 vesicle-associated membrane protein 8 pseudogene NW_004955434 10962508 10964570 + 102007462 AGCD01032368 MODEL 9041799 protein-coding LOC102012087 interferon-induced very large GTPase 1-like NW_004955414 22472329 22477687 - 102012087 AGCD01015457;XM_005380508 XP_005380565 MODEL 8943551 protein-coding LOC102003553 somatomedin-B and thrombospondin type-1 domain-containing protein-like NW_004955420 12198618 12206853 + 102003553 AGCD01020857;GBDF01251527;XM_005383099 XP_005383156 MODEL 8943897 ncrna LOC102029458 uncharacterized LOC102029458 NW_004955402 10722533 10725634 + 102029458 AGCD01000288;GBDJ01170483;XR_259048 MODEL 10293609 ncrna LOC106149301 uncharacterized LOC106149301 NW_004955442 16120598 16128072 + 106149301 AGCD01037891;GBDF01013789;XR_001235375 MODEL 8765904 protein-coding Sik2 salt inducible kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN insulin receptor signaling pathway (ortholog); intracellular signal transduction (ortholog); negative regulation of transcription from RNA polymerase II promoter by glucose (ortholog); ASSOCIATED WITH Disease Progression (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog); nucleus (ortholog) NW_004955412 13342032 13458076 + 102017966 AGCD01012833;AGCD01012834;AGCD01012835;AGCD01012836;GBCB01023497;GBDK01238669;XM_005378076 XP_005378133 MODEL 8852152 pseudo LOC102027056 vomeronasal type-1 receptor 4-like NW_004955465 12806541 12807313 + 102027056 AGCD01050563;XM_005398996 MODEL 8890791 pseudo LOC102018158 nascent polypeptide-associated complex subunit alpha-like NW_004955455 10593876 10627433 + 102018158 AGCD01045958;AGCD01045959 MODEL 8818132 pseudo LOC102018568 tripartite motif-containing protein 44 pseudogene NW_004955407 42667907 42670883 + 102018568 AGCD01007895 MODEL 10153344 ncrna LOC106146342 uncharacterized LOC106146342 NW_004955474 6838633 6840304 - 106146342 AGCD01054496;XR_001230736 MODEL 10225361 ncrna LOC106147013 uncharacterized LOC106147013 NW_004955511 3568568 3608770 + 106147013 AGCD01066468;GBDF01278819;XR_001231709 MODEL 8717837 ncrna LOC102010136 uncharacterized LOC102010136 NW_004955411 9963098 9981570 - 102010136 AGCD01011768;GBDF01305717;XR_259928 MODEL 8830119 protein-coding Scg2 secretogranin II ENCODES a protein that exhibits chemoattractant activity (ortholog); cytokine activity (ortholog); INVOLVED IN angiogenesis (ortholog); eosinophil chemotaxis (ortholog); induction of positive chemotaxis (ortholog); FOUND IN dense core granule (ortholog); extracellular region (ortholog); neuronal dense core vesicle (ortholog) NW_004955453 10361440 10366956 + 102021517 AGCD01044784;GBDI01218940;XM_005395488;XM_005395489 XP_005395545;XP_005395546 MODEL 8963159 protein-coding Srp9 signal recognition particle 9 PARTICIPATES IN interleukin-3 signaling pathway NW_004955520 163713 168507 - 102004745 AGCD01068009;GBCE01002526;XM_005409214 XP_005409271 MODEL 10325910 ncrna LOC106146583 uncharacterized LOC106146583 NW_004955485 7013784 7017269 + 106146583 AGCD01058631;GBDK01145459;XR_001231084 MODEL 8881119 ncrna LOC102006005 uncharacterized LOC102006005 NW_004955462 6714177 6722753 - 102006005 AGCD01049288;GBDI01311251;XR_263100;XR_263101 MODEL 9038514 protein-coding Tsen2 tRNA splicing endonuclease subunit 2 INVOLVED IN tRNA splicing, via endonucleolytic cleavage and ligation (ortholog); tRNA-type intron splice site recognition and cleavage (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH Deglutition Disorders (ortholog); genetic disease (ortholog); hemolytic-uremic syndrome (ortholog); FOUND IN nucleoplasm (ortholog); tRNA-intron endonuclease complex (ortholog) NW_004955429 14970105 14997459 + 102018956 AGCD01028787;AGCD01028788;GBDK01001142;XM_005387020;XM_005387021;XM_013515519;XR_001234537;XR_261333 XP_005387077;XP_005387078;XP_013370973 MODEL 9046561 ncrna LOC102006358 uncharacterized LOC102006358 NW_004955494 958163 966632 + 102006358 AGCD01061389;GBDI01027847;XR_264101 MODEL 8778490 protein-coding Pitx3 paired like homeodomain 3 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to glial cell derived neurotrophic factor (ortholog); dopaminergic neuron differentiation (ortholog); lens development in camera-type eye (ortholog); ASSOCIATED WITH anterior segment dysgenesis (ortholog); anterior segment dysgenesis 1 (ortholog); Aphakia (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955485 8130244 8140292 + 102016057 AGCD01058690;AGCD01058691;GBCB01061028;GBDF01098688;XM_013504101 XP_013359555 MODEL 9065738 protein-coding Spesp1 sperm equatorial segment protein 1 INVOLVED IN acrosome reaction (ortholog); fertilization (ortholog); fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955450 7355144 7370413 - 102018245 AGCD01042536;GBDF01006111;XM_005393668;XM_005393669 XP_005393725;XP_005393726 MODEL 9055836 protein-coding Bmp6 bone morphogenetic protein 6 ENCODES a protein that exhibits BMP receptor binding (ortholog); cytokine activity (ortholog); growth factor activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); bone development (ortholog); cell differentiation (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH Acute Otitis Media (ortholog); adult T-cell leukemia/lymphoma (ortholog); allergic contact dermatitis (ortholog); FOUND IN extracellular region (ortholog); protein-containing complex (ortholog); vesicle (ortholog) NW_004955465 6053600 6201254 - 102020895 AGCD01050437;AGCD01050438;GBCE01031404;GBCQ01095928;XM_013521839 XP_013377293 MODEL 39133630 snrna U4 U4 spliceosomal RNA 8922348 pseudo LOC102024212 ubiquitin-fold modifier 1 pseudogene NW_004955470 1453839 1454161 + 102024212 AGCD01052641;XM_005400594 MODEL 9059031 protein-coding Tnfrsf18 TNF receptor superfamily member 18 INVOLVED IN positive regulation of cell adhesion (ortholog); positive regulation of leukocyte migration (ortholog); positive regulation of tyrosine phosphorylation of STAT protein (ortholog); ASSOCIATED WITH anogenital venereal wart (ortholog); HTLV-1-associated myelopathy/tropical spastic paraparesis (ortholog); leishmaniasis (ortholog); FOUND IN external side of plasma membrane (ortholog) NW_004955486 9571527 9573733 + 102029751 AGCD01059191;GBDI01221225;XM_005404252;XM_005404253;XM_013504221 XP_005404309;XP_005404310;XP_013359675 MODEL 9008334 ncrna LOC102026713 uncharacterized LOC102026713 NW_004955406 5777841 5780843 - 102026713 AGCD01005739;GBDF01088517;XR_001230911 MODEL 8710847 pseudo LOC102028388 zinc finger protein 263 pseudogene NW_004955461 1215351 1218656 + 102028388 AGCD01048804 MODEL 8810362 protein-coding Ldaf1 lipid droplet assembly factor 1 INVOLVED IN lipid droplet formation (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); lipid droplet (ortholog) NW_004955493 368399 386651 + 102006040 AGCD01060848;AGCD01060849;AGCD01060850;GBDF01001588;XM_005405049 XP_005405106 MODEL 9000648 pseudo LOC102003239 coiled-coil domain-containing protein 90B, mitochondrial pseudogene NW_004955481 173004 173995 - 102003239 AGCD01056783 MODEL 9057948 ncrna LOC102012541 uncharacterized LOC102012541 NW_004955420 22215125 22224734 - 102012541 AGCD01021189;GBDJ01422894;XR_260735 MODEL 8828709 ncrna LOC102004597 uncharacterized LOC102004597 NW_004955415 12081312 12097999 + 102004597 AGCD01016184;GBCE01084010;XR_001233219;XR_001233220 MODEL 8870623 protein-coding LOC102020713 melanoma-associated antigen B4-like NW_004955539 2864527 2870091 - 102020713 AGCD01071236;AGCD01071237;GBDF01280495;XM_005410905 XP_005410962 MODEL 9062464 ncrna LOC102019714 uncharacterized LOC102019714 NW_004955497 4488636 4491965 - 102019714 AGCD01062577;GBDF01076815;XR_264204 MODEL 8841639 pseudo LOC102021503 synaptobrevin homolog YKT6 pseudogene NW_004955402 16757606 16758112 - 102021503 AGCD01000488 MODEL 8816956 protein-coding LOC102024213 olfactory receptor 52A5-like NW_004955414 20781739 20782683 - 102024213 AGCD01015389;XM_005380067 XP_005380124 MODEL 8793632 pseudo LOC102025648 monocyte to macrophage differentiation factor pseudogene NW_004955404 32277959 32294635 - 102025648 AGCD01004036 MODEL 10243301 ncrna LOC106146732 uncharacterized LOC106146732 NW_004955493 4180009 4213949 + 106146732 AGCD01061026;GBDF01191949;XR_001231293 MODEL 8777601 pseudo LOC102008986 transcription elongation factor A N-terminal and central domain-containing protein-like NW_004955438 5285314 5286378 - 102008986 AGCD01035064 MODEL 8720991 protein-coding Igf2bp2 insulin like growth factor 2 mRNA binding protein 2 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); N6-methyladenosine-containing RNA reader activity (ortholog); INVOLVED IN cold-induced thermogenesis (ortholog); CRD-mediated mRNA stabilization (ortholog); energy homeostasis (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); autosomal dominant tubulointerstitial kidney disease 1 (ortholog); basal cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytoskeleton (ortholog) NW_004955420 21818970 21957295 + 102009390 AGCD01021171;AGCD01021172;AGCD01021173;AGCD01021174;AGCD01021175;GBBH01160648;GBDJ01356061;XM_013513485 XP_013368939 MODEL 8967210 protein-coding Phf20 PHD finger protein 20 ASSOCIATED WITH Dwarfism (ortholog); FOUND IN histone acetyltransferase complex (ortholog); MLL1 complex (ortholog); NSL complex (ortholog) NW_004955422 25563511 25688546 - 102004175 AGCD01023253;AGCD01023254;AGCD01023255;AGCD01023256;AGCD01023257;AGCD01023258;AGCD01023259;AGCD01023260;GBDK01185246;XM_005384764;XM_005384766;XM_005384767;XM_013514071;XM_013514072;XM_013514073 XP_005384821;XP_005384823;XP_005384824;XP_013369525;XP_013369526;XP_013369527 MODEL 626189192 snorna SNORD4A small nucleolar RNA, C/D box 4A 9003502 ncrna LOC102025326 uncharacterized LOC102025326 NW_004955409 8371307 8391398 + 102025326 AGCD01009402;AGCD01009403;AGCD01009404;AGCD01009405;AGCD01009406;GBDF01190789;XR_001232688;XR_259758 MODEL 10148782 ncrna LOC106146584 uncharacterized LOC106146584 NW_004955485 8326719 8327426 + 106146584 AGCD01058710;GBBH01149648;XR_001231086 MODEL 10107276 ncrna LOC106146466 uncharacterized LOC106146466 NW_004955481 9430194 9617468 - 106146466 AGCD01057100;AGCD01057101;AGCD01057102;AGCD01057103;AGCD01057104;GBDK01373097;XR_001230914;XR_001230915 MODEL 8769497 ncrna LOC102003554 uncharacterized LOC102003554 NW_004955420 23737531 23739070 - 102003554 AGCD01021255;GBBH01155304;XR_001233760;XR_260743 MODEL 10079123 ncrna LOC106149302 uncharacterized LOC106149302 NW_004955442 260678 269198 - 106149302 AGCD01037417;AGCD01037418;AGCD01037419;GBCQ01087818;XR_001235379 MODEL 8817241 protein-coding Ndufs7 NADH:ubiquinone oxidoreductase core subunit S7 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); NADH dehydrogenase activity (ortholog); protease binding (ortholog); INVOLVED IN mitochondrial electron transport, NADH to ubiquinone (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); PARTICIPATES IN doxorubicin pharmacokinetics pathway; ASSOCIATED WITH bipolar disorder (ortholog); COVID-19 (ortholog); developmental disorder of mental health (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); neuronal cell body (ortholog) NW_004955495 6540360 6548072 - 102006930 AGCD01062085;GBCB01003829;XM_005405978 XP_005406035 MODEL 8781765 ncrna LOC102026716 uncharacterized LOC102026716 NW_004955455 3469637 3477794 + 102026716 AGCD01045628;GBDF01179860;XR_001236268;XR_001236269;XR_001236270;XR_262821;XR_262822;XR_262823 MODEL 8959132 protein-coding Tfap2d transcription factor AP-2 delta ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN inferior colliculus development (ortholog); negative regulation of neuron apoptotic process (ortholog); positive regulation of DNA-templated transcription (ortholog); FOUND IN transcription regulator complex (ortholog) NW_004955411 7219474 7276350 - 102004257 AGCD01011699;AGCD01011700;XM_005377665 XP_005377722 MODEL 39132932 misc_rna Y_RNA Y RNA 8854140 protein-coding LOC102028389 coiled-coil domain-containing protein 7-like NW_004955462 4691767 4764891 - 102028389 AGCD01049239;AGCD01049240;GBDK01026168;XM_005398153;XM_005398154;XR_263097 XP_005398210;XP_005398211 MODEL 8847500 ncrna LOC102018570 uncharacterized LOC102018570 NW_004955456 15338642 15344744 + 102018570 AGCD01046668;GBDF01041403;XR_001236341;XR_001236342 MODEL 8729355 pseudo LOC102030172 F-box only protein 9 pseudogene NW_004955467 2018448 2027290 - 102030172 AGCD01051299 MODEL 8909252 protein-coding LOC102027731 vomeronasal type-1 receptor 4-like NW_004955465 12844992 12845900 - 102027731 AGCD01050565;XM_005398998 XP_005399055 MODEL 8740345 protein-coding Esrrg estrogen related receptor gamma ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); estrogen response element binding (ortholog); identical protein binding (ortholog); INVOLVED IN positive regulation of cold-induced thermogenesis (ortholog); positive regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Fetal Growth Retardation (ortholog); primary ovarian insufficiency (ortholog) NW_004955406 1260240 1784652 + 102009797 AGCD01005630;AGCD01005631;AGCD01005632;AGCD01005633;AGCD01005634;AGCD01005635;AGCD01005636;GBCB01100801;XM_005374714;XM_013519877;XM_013519883;XM_013519891;XM_013519896;XM_013519901;XM_013519909;XM_013519919;XM_013519926 XP_005374771;XP_013375331;XP_013375337;XP_013375345;XP_013375350;XP_013375355;XP_013375363;XP_013375373;XP_013375380 MODEL 10075818 ncrna LOC106148104 uncharacterized LOC106148104 NW_004955415 2594713 2630017 - 106148104 AGCD01015906;AGCD01015907;XR_001233264 MODEL 8820683 ncrna LOC102023914 uncharacterized LOC102023914 NW_004955420 11098004 11102066 - 102023914 AGCD01020796;GBDF01084297;XR_260701 MODEL 8753417 protein-coding LOC102009347 translation initiation factor IF-2-like NW_004955406 23881198 23887173 - 102009347 AGCD01006186;GBCQ01162563;XM_005375074;XM_013521722 XP_005375131;XP_013377176 MODEL 8788375 pseudo LOC102007463 60S ribosomal protein L21 pseudogene NW_004955434 3733419 3736535 - 102007463 AGCD01032143 MODEL 8972871 protein-coding Polr1f RNA polymerase I subunit F INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); transcription elongation by RNA polymerase I (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; FOUND IN fibrillar center (ortholog); nucleoplasm (ortholog); RNA polymerase I complex (ortholog) NW_004955410 22435136 22442839 - 102028505 AGCD01011074;GBCB01041940;XM_005377356 XP_005377413 MODEL 39132264 snorna SNORD4B small nucleolar RNA, C/D box 4B 8978995 ncrna LOC102029461 uncharacterized LOC102029461 NW_004955402 50410905 50429194 - 102029461 AGCD01001260;GBDF01149982;XR_259103 MODEL 8797830 protein-coding Tnfrsf19 TNF receptor superfamily member 19 INVOLVED IN hair follicle development (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH melanoma (ortholog); Nasopharyngeal Neoplasms (ortholog) NW_004955497 3945119 4022478 + 102018509 AGCD01062561;AGCD01062562;AGCD01062563;GBCE01052470;GBCE01052471;XM_013505499 XP_013360953 MODEL 8723910 pseudo LOC102003240 bridging integrator 2-like NW_004955418 22080594 22081909 - 102003240 AGCD01019279 MODEL 8751981 protein-coding Kremen1 kringle containing transmembrane protein 1 INVOLVED IN apoptotic process (ortholog); limb development (ortholog); negative regulation of axon regeneration (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH ectodermal dysplasia 13 (ortholog); genetic disease (ortholog); FOUND IN neuronal cell body (ortholog) NW_004955455 3308740 3368690 + 102025320 AGCD01045621;AGCD01045622;GBBH01091049;XM_005396174;XM_005396175 XP_005396231;XP_005396232 MODEL 9029890 protein-coding Pald1 phosphatase domain containing paladin 1 FOUND IN cytosol (ortholog) NW_004955437 20721328 20799090 - 102012242 AGCD01034880;AGCD01034881;AGCD01034882;AGCD01034883;AGCD01034884;GBCE01155170;XM_005390053;XM_005390054;XM_005390055;XM_005390056 XP_005390110;XP_005390111;XP_005390112;XP_005390113 MODEL 8840915 protein-coding Ldah lipid droplet associated hydrolase ENCODES a protein that exhibits sterol ester esterase activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); intracellular triglyceride homeostasis (ortholog); lipid droplet fusion (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN endoplasmic reticulum (ortholog); lipid droplet (ortholog) NW_004955469 3161691 3277018 - 102017861 AGCD01052292;AGCD01052293;AGCD01052294;AGCD01052295;AGCD01052296;GBBH01115224;XM_005400355;XM_005400356;XM_005400357;XM_013522654 XP_005400412;XP_005400413;XP_005400414;XP_013378108 MODEL 8917671 protein-coding Scg3 secretogranin III INVOLVED IN protein localization to secretory granule (ortholog); ASSOCIATED WITH Metabolic Syndrome (ortholog); schizophrenia (ortholog); FOUND IN extracellular region (ortholog); secretory granule membrane (ortholog) NW_004955409 2876355 2907363 - 102022052 AGCD01009225;GBBH01142861;GBCE01123365;XM_005376640 XP_005376697 MODEL 8940567 protein-coding Slc35a5 solute carrier family 35 member A5 ENCODES a protein that exhibits pyrimidine nucleotide-sugar transmembrane transporter activity (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Monoclonal B-Cell Lymphocytosis (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955427 12906650 12940419 + 102026997 AGCD01027230;GBDF01126546;XM_005386388;XM_005386389;XM_013515192;XR_261261;XR_261262;XR_261263;XR_261265;XR_261266 XP_005386445;XP_005386446;XP_013370646 MODEL 8890509 pseudo LOC102012089 serine racemase pseudogene NW_004955475 6283187 6284059 - 102012089 AGCD01054958 MODEL 8949909 pseudo LOC102006363 eukaryotic translation initiation factor 1 pseudogene NW_004955423 9833774 9834101 - 102006363 AGCD01023668 MODEL 8929502 protein-coding LOC102015506 amyloid protein A-like NW_004955414 32956958 32961540 - 102015506 AGCD01015791;GBDI01019735;XM_005380400;XM_005380401;XM_013511904 XP_005380457;XP_005380458;XP_013367358 MODEL 9000121 protein-coding Kremen2 kringle containing transmembrane protein 2 INVOLVED IN limb development (ortholog); negative regulation of ossification (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Ependymomas (ortholog) NW_004955442 14376466 14381106 - 102011482 AGCD01037815;GBDJ01113919;XM_005391388;XM_005391389;XM_013517862 XP_005391445;XP_005391446;XP_013373316 MODEL 8739864 protein-coding Srpk1 SRSF protein kinase 1 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); intracellular signal transduction (ortholog); negative regulation of viral genome replication (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955437 3664290 3729832 - 102003801 AGCD01034331;AGCD01034332;AGCD01034333;GBDF01002110;GBDI01120434;XM_005389568 XP_005389625 MODEL 39133631 snrna U4 U4 spliceosomal RNA 9032679 ncrna LOC102025329 uncharacterized LOC102025329 NW_004955461 14190918 14214161 + 102025329 AGCD01049048;GBDI01306582;XR_001236562 MODEL 8794785 protein-coding Spg11 SPG11 vesicle trafficking associated, spatacsin ENCODES a protein that exhibits identical protein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN autophagosome organization (ortholog); axo-dendritic transport (ortholog); axon extension (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 5 (ortholog); autism spectrum disorder (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955416 11084448 11168478 - 102016589 AGCD01017174;AGCD01017175;AGCD01017176;AGCD01017177;AGCD01017178;GBCQ01152753;XM_005381419;XM_005381422;XM_013512469 XP_005381476;XP_005381479;XP_013367923 MODEL 10253452 ncrna LOC106148105 uncharacterized LOC106148105 NW_004955415 28743227 28769292 + 106148105 AGCD01016645;GBCB01082120;XR_001233265;XR_001233266;XR_001233267;XR_001233268;XR_001233269;XR_001233270 MODEL 8773276 protein-coding LOC102018160 olfactory receptor 6C70-like NW_004955458 3167363 3168304 + 102018160 AGCD01047276;XM_013520812 XP_013376266 MODEL 10250026 protein-coding LOC106146585 RNA demethylase ALKBH5-like NW_004955485 1273312 1353161 - 106146585 AGCD01058475;AGCD01058476;GBDI01280385;GBDJ01074741;XM_013504105 XP_013359559 MODEL 8849354 protein-coding Sik3 SIK family kinase 3 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN cartilage development involved in endochondral bone morphogenesis (ortholog); endochondral ossification (ortholog); limb morphogenesis (ortholog); ASSOCIATED WITH Spondyloepimetaphyseal Dysplasia, Krakow Type (ortholog); FOUND IN cytoplasm (ortholog) NW_004955412 18177175 18280687 - 102023676 AGCD01012927;AGCD01012928;AGCD01012929;GBDK01233303;XM_005378194;XM_013511104;XM_013511105;XM_013511106;XM_013511107;XM_013511108 XP_005378251;XP_013366558;XP_013366559;XP_013366560;XP_013366561;XP_013366562 MODEL 9010567 pseudo LOC102020718 putative 60S ribosomal protein L37a NW_004955439 3641729 3642057 + 102020718 AGCD01035683 MODEL 10078103 ncrna LOC106146343 uncharacterized LOC106146343 NW_004955474 6658720 6669612 - 106146343 AGCD01054483;AGCD01054484;GBDF01009639;XR_001230739;XR_001230740;XR_001230741 MODEL 8870438 protein-coding Polr1g RNA polymerase I subunit G INVOLVED IN rRNA transcription (ortholog); transcription elongation by RNA polymerase I (ortholog); transcription initiation at RNA polymerase I promoter (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH multiple myeloma (ortholog); FOUND IN fibrillar center (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955555 2389569 2393410 + 102013014 AGCD01073149;GBDF01040878;XM_005412525;XM_013508708 XP_005412582;XP_013364162 MODEL 8721742 protein-coding Ndufs8 NADH:ubiquinone oxidoreductase core subunit S8 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); NADH dehydrogenase activity (ortholog); INVOLVED IN mitochondrial electron transport, NADH to ubiquinone (ortholog); mitochondrial respiratory chain complex I assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); Leigh disease (ortholog); mitochondrial complex I deficiency (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955422 17781374 17785395 - 102007780 AGCD01022932;GBDK01002250;XM_005384289;XM_013514041 XP_005384346;XP_013369495 MODEL 8735282 protein-coding LOC102021507 zinc finger protein 883-like NW_004955624 87138 106468 - 102021507 AGCD01077434;AGCD01077435;AGCD01077436;XM_013510159 XP_013365613 MODEL 10283083 protein-coding LOC106150123 basic proline-rich protein-like NW_004955465 12513964 12515837 + 106150123 AGCD01050550;XM_013521810 XP_013377264 MODEL 8764680 protein-coding LOC102024218 olfactory receptor 1468-like NW_004955473 3518681 3519637 - 102024218 AGCD01053934;XM_005401293 XP_005401350 MODEL 8723248 ncrna LOC102006006 uncharacterized LOC102006006 NW_004955462 11471552 11476166 - 102006006 AGCD01049391;GBDF01209715;XR_001236585 MODEL 10178217 ncrna LOC106146733 uncharacterized LOC106146733 NW_004955494 6579858 6629916 - 106146733 AGCD01061540;AGCD01061541;AGCD01061542;GBCE01036904;XR_001231294 MODEL 8716128 ncrna LOC102008990 uncharacterized LOC102008990 NW_004955549 117973 173721 + 102008990 AGCD01072419;GBDF01076042;XR_001232252;XR_264912 MODEL 8733954 protein-coding LOC102028395 multidrug and toxin extrusion protein 2-like NW_004955467 177210 239747 - 102028395 AGCD01051211;AGCD01051212;AGCD01051213;AGCD01051214;AGCD01051215;GBBH01002294;GBDK01265593;XM_013522185 XP_013377639 MODEL 9006267 protein-coding Tsen34 tRNA splicing endonuclease subunit 34 INVOLVED IN tRNA-type intron splice site recognition and cleavage (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH Deglutition Disorders (ortholog); intellectual disability (ortholog); microcephaly (ortholog); FOUND IN nucleoplasm (ortholog); tRNA-intron endonuclease complex (ortholog) NW_004955604 84072 89419 - 102011716 AGCD01076861;GBCE01054099;XM_005414852;XM_005414853;XM_005414854;XM_005414855;XM_013510089 XP_005414909;XP_005414910;XP_005414911;XP_005414912;XP_013365543 MODEL 8997621 protein-coding Piwil1 piwi like RNA-mediated gene silencing 1 ENCODES a protein that exhibits mRNA binding (ortholog); mRNA cap binding complex binding (ortholog); piRNA binding (ortholog); INVOLVED IN piRNA-mediated gene silencing by mRNA destabilization (ortholog); primary piRNA processing (ortholog); sperm DNA condensation (ortholog); ASSOCIATED WITH male infertility (ortholog); substance-related disorder (ortholog); FOUND IN chromatoid body (ortholog); cytoplasm (ortholog); dense body (ortholog) NW_004955482 1435925 1451067 - 102024230 AGCD01057214;GBDF01008267;XM_013503748 XP_013359202 MODEL 8977832 protein-coding LOC102018571 olfactory receptor 6C6-like NW_004955458 2623103 2624062 - 102018571 AGCD01047240;XM_005397496 XP_005397553 MODEL 8896148 protein-coding LOC102030177 interferon-inducible protein AIM2 NW_004955468 10836141 10910712 - 102030177 AGCD01052105;AGCD01052106;AGCD01052107;AGCD01052108;GBBH01143282;XM_013522458;XM_013522459;XM_013522460;XM_013522461;XM_013522462;XR_001236916;XR_001236917;XR_001236918;XR_001236919;XR_001236920 XP_013377912;XP_013377913;XP_013377914;XP_013377915;XP_013377916 MODEL 8813518 protein-coding Ess2 ess-2 spliceosome associated protein INVOLVED IN mRNA splicing, via spliceosome (ortholog); nervous system development (ortholog); ASSOCIATED WITH DiGeorge syndrome (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nucleus (ortholog) NW_004955442 18829037 18840542 + 102012369 AGCD01038021;AGCD01038022;GBDF01125719;XM_005391788 XP_005391845 MODEL 8833098 protein-coding Phf20l1 PHD finger protein 20 like 1 ENCODES a protein that exhibits methylation-dependent protein binding (ortholog); INVOLVED IN negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); negative regulation of protein catabolic process (ortholog); FOUND IN nucleus (ortholog) NW_004955461 7391175 7465012 + 102013260 AGCD01048918;AGCD01048919;GBCE01104746;XM_013521336;XM_013521337;XM_013521338 XP_013376790;XP_013376791;XP_013376792 MODEL 9040720 protein-coding LOC102027057 multidrug and toxin extrusion protein 1 NW_004955467 238300 282495 - 102027057 AGCD01051215;GBCC01032974;XM_005399261;XM_005399262;XM_005399264;XM_013522186;XM_013522188 XP_005399318;XP_005399319;XP_005399321;XP_013377640;XP_013377642 MODEL 8916617 ncrna LOC102012543 uncharacterized LOC102012543 NW_004955421 4876441 4882855 + 102012543 AGCD01021704;GBCQ01090963;XR_001233851 MODEL 8835142 ncrna LOC102004598 uncharacterized LOC102004598 NW_004955415 14680227 14691868 - 102004598 AGCD01016306;AGCD01016307;GBDJ01204578;XR_260294 MODEL 10144608 ncrna LOC106147014 uncharacterized LOC106147014 NW_004955407 31189453 31193415 + 106147014 AGCD01007642;XR_001231712 MODEL 9032823 ncrna LOC102003556 uncharacterized LOC102003556 NW_004955420 28596394 28604005 + 102003556 AGCD01021480;AGCD01021481;GBBH01098605;XR_001233725;XR_001233726;XR_001233727;XR_001233728;XR_001233729;XR_001233730;XR_260767;XR_260768 MODEL 10239067 ncrna LOC106149303 uncharacterized LOC106149303 NW_004955442 16835629 16843299 + 106149303 AGCD01037917;GBDF01210798;XR_001235380 MODEL 8791816 ncrna LOC102010145 uncharacterized LOC102010145 NW_004955414 6341018 6344268 - 102010145 AGCD01014918;GBDK01371346;XR_001233178;XR_260156 MODEL 8810950 pseudo LOC102026717 eukaryotic initiation factor 4A-I-like NW_004955406 26533416 26553241 - 102026717 AGCD01006253 MODEL 8789428 protein-coding Tfap2e transcription factor AP-2 epsilon ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); identical protein binding (ortholog); INVOLVED IN positive regulation of transcription by RNA polymerase II (ortholog) NW_004955452 13666712 13682063 + 102021204 AGCD01044431;GBDF01136960;XM_005395152 XP_005395209 MODEL 8760878 protein-coding LOC102025663 glutathione S-transferase A-like NW_004955411 5147531 5163079 + 102025663 AGCD01011600;AGCD01011601;AGCD01011602;GBDF01021143;XM_005377649 XP_005377706 MODEL 8809888 protein-coding Igf2bp3 insulin like growth factor 2 mRNA binding protein 3 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); N6-methyladenosine-containing RNA reader activity (ortholog); INVOLVED IN CRD-mediated mRNA stabilization (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); hepatocellular carcinoma (ortholog); malignant mesothelioma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); cytosol (ortholog) NW_004955410 25605323 25734845 - 102014023 AGCD01011162;AGCD01011163;AGCD01011164;AGCD01011165;AGCD01011166;AGCD01011167;AGCD01011168;AGCD01011169;AGCD01011170;AGCD01011171;GBCE01008969;XM_005377396;XM_013510584;XM_013510585 XP_005377453;XP_013366038;XP_013366039 MODEL 8954407 protein-coding Tnfrsf1a TNF receptor superfamily member 1A ENCODES a protein that exhibits protease binding (ortholog); protein-containing complex binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN aortic valve development (ortholog); apoptotic process (ortholog); astrocyte activation (ortholog); PARTICIPATES IN ceramide signaling pathway; nuclear factor kappa B signaling pathway; tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH acne (ortholog); acquired immunodeficiency syndrome (ortholog); Acute Experimental Pancreatitis (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); extracellular region (ortholog) NW_004955413 3982670 3996320 - 102012749 AGCD01013591;GBDK01007941;XM_005378759;XM_013511327;XM_013511328 XP_005378816;XP_013366781;XP_013366782 MODEL 9023862 protein-coding Scg5 secretogranin V ENCODES a protein that exhibits enzyme inhibitor activity (ortholog); INVOLVED IN intracellular protein transport (ortholog); peptide hormone processing (ortholog); regulation of hormone secretion (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); Colorectal Neoplasms (ortholog); medulloblastoma (ortholog); FOUND IN extracellular region (ortholog); nucleus (ortholog); secretory granule (ortholog) NW_004955416 1867848 1914505 - 102027844 AGCD01016841;GBDI01262713;XM_005381176;XM_005381177 XP_005381233;XP_005381234 MODEL 8744069 ncrna LOC102009348 uncharacterized LOC102009348 NW_004955455 11123017 11124542 - 102009348 AGCD01045984;GBDF01074169;XR_262855;XR_262856 MODEL 9029342 protein-coding Bmp7 bone morphogenetic protein 7 ENCODES a protein that exhibits BMP receptor binding (ortholog); growth factor activity (ortholog); heparin binding (ortholog); INVOLVED IN allantois development (ortholog); anatomical structure formation involved in morphogenesis (ortholog); animal organ morphogenesis (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH acute kidney tubular necrosis (ortholog); Acute Otitis Media (ortholog); atrial heart septal defect 8 (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog); vesicle (ortholog) NW_004955445 2154057 2235594 + 102006504 AGCD01039351;GBDK01182189;XM_005392260 XP_005392317 MODEL 8796836 pseudo LOC102012095 heterogeneous nuclear ribonucleoprotein M pseudogene NW_004955417 9967960 9969097 + 102012095 AGCD01018063 MODEL 8992036 protein-coding Slc35b1 solute carrier family 35 member B1 ENCODES a protein that exhibits ATP:ADP antiporter activity (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955451 11870771 11877149 + 102023424 AGCD01043367;GBDF01050591;XM_005394207 XP_005394264 MODEL 8776952 pseudo LOC102006370 non-histone chromosomal protein HMG-17 pseudogene NW_004955427 21180390 21189979 - 102006370 AGCD01027432;AGCD01027433;XR_261284 MODEL 8847419 protein-coding LOC102015510 collagen alpha-1(II) chain-like NW_004955415 32621242 32628550 - 102015510 AGCD01016728;GBDJ01008308;XM_005381144 XP_005381201 MODEL 8995981 pseudo LOC102019715 translationally-controlled tumor protein pseudogene NW_004955500 3829536 3830051 - 102019715 AGCD01063758 MODEL 8774824 ncrna LOC102025330 uncharacterized LOC102025330 NW_004955410 21642542 21670562 - 102025330 AGCD01011064;GBDF01276812;XR_001232740;XR_259855 MODEL 8836618 protein-coding LOC102029464 basigin-like NW_004955748 5193 6172 + 102029464 AGCD01078259;GBDF01007782;XM_005415090 XP_005415147 MODEL 8886162 protein-coding Spg21 SPG21 abhydrolase domain containing, maspardin ENCODES a protein that exhibits CD4 receptor binding (ortholog); INVOLVED IN collateral sprouting (ortholog); epidermal growth factor receptor signaling pathway (ortholog); gene expression (ortholog); ASSOCIATED WITH hereditary spastic paraplegia (ortholog); MAST syndrome (ortholog); Spinocerebellar Ataxia 50 (ortholog); FOUND IN cytosol (ortholog); trans-Golgi network transport vesicle (ortholog) NW_004955450 10424394 10455680 + 102012044 AGCD01042620;AGCD01042621;AGCD01042622;GBDF01127748;XM_005393738;XM_013518963 XP_005393795;XP_013374417 MODEL 8989798 protein-coding LOC102003241 MARVEL domain-containing protein 3-like NW_004955484 4331566 4346570 + 102003241 AGCD01058209;AGCD01058210;GBCQ01038738;XM_013503949 XP_013359403 MODEL 9044736 protein-coding LOC102020721 olfactory receptor 4K15 NW_004955550 403729 404676 - 102020721 AGCD01072499;XM_005412130 XP_005412187 MODEL 8700722 protein-coding Sike1 suppressor of IKBKE 1 ENCODES a protein that exhibits protein kinase binding (ortholog); protein-macromolecule adaptor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN negative regulation of hippo signaling (ortholog); FOUND IN cytoplasm (ortholog); FAR/SIN/STRIPAK complex (ortholog) NW_004955435 18066428 18076422 - 102022534 AGCD01033383;AGCD01033384;GBCQ01129412;XM_005389015;XM_013516466 XP_005389072;XP_013371920 MODEL 10210364 ncrna LOC106150124 uncharacterized LOC106150124 NW_004955465 10713576 10715667 - 106150124 AGCD01050512;XR_001236743 MODEL 8930772 ncrna LOC102023915 uncharacterized LOC102023915 NW_004955420 25461108 25462326 + 102023915 AGCD01021359;GBDF01188263;XR_001233742 MODEL 8924495 pseudo LOC102007465 GPALPP motifs-containing protein 1 pseudogene NW_004955436 21483145 21488677 - 102007465 AGCD01034055 MODEL 39133632 snrna U4 U4 spliceosomal RNA 10331897 ncrna LOC106146467 uncharacterized LOC106146467 NW_004955481 5753481 5757547 - 106146467 AGCD01057002;XR_001230916 MODEL 9013165 protein-coding Piwil2 piwi like RNA-mediated gene silencing 2 ENCODES a protein that exhibits mRNA binding (ortholog); piRNA binding (ortholog); RNA endonuclease activity (ortholog); INVOLVED IN germ-line stem cell population maintenance (ortholog); negative regulation of circadian rhythm (ortholog); oogenesis (ortholog); ASSOCIATED WITH celiac disease (ortholog); male infertility (ortholog); FOUND IN chromatoid body (ortholog); cytoplasm (ortholog); dense body (ortholog) NW_004955403 45737674 45819478 + 102005988 AGCD01002826;AGCD01002827;AGCD01002828;AGCD01002829;AGCD01002830;AGCD01002831;AGCD01002832;AGCD01002833;AGCD01002834;AGCD01002835;AGCD01002836;GBDK01179013;XM_005373656;XM_013513815 XP_005373713;XP_013369269 MODEL 39132941 misc_rna Y_RNA Y RNA 10349375 ncrna LOC106148106 uncharacterized LOC106148106 NW_004955415 5010018 5025220 - 106148106 AGCD01015989;GBDI01024206;XR_001233272;XR_001233273;XR_001233274;XR_001233275;XR_001233276 MODEL 8731435 protein-coding Phf21a PHD finger protein 21A ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); suckling behavior (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); Intellectual Developmental Disorder with Behavioral Abnormalities and Craniofacial Dysmorphism with or without Seizures (ortholog); FOUND IN DNA repair complex (ortholog); histone deacetylase complex (ortholog); nucleoplasm (ortholog) NW_004955422 1857335 2045816 + 102012545 AGCD01022475;AGCD01022476;GBDF01089530;XM_005384052;XM_005384053;XM_005384054;XM_013514025;XM_013514026;XM_013514027;XM_013514028;XM_013514029;XM_013514030;XM_013514031;XM_013514032;XM_013514033;XM_013514034;XM_013514035;XM_013514036 XP_005384109;XP_005384110;XP_005384111;XP_013369479;XP_013369480;XP_013369481;XP_013369482;XP_013369483;XP_013369484;XP_013369485;XP_013369486;XP_013369487;XP_013369488;XP_013369489;XP_013369490 MODEL 10065695 ncrna LOC106146586 uncharacterized LOC106146586 NW_004955485 8933976 8937738 - 106146586 AGCD01058732;GBCB01111295;XR_001231090 MODEL 10267272 ncrna LOC106147015 uncharacterized LOC106147015 NW_004955511 5730280 5731245 + 106147015 AGCD01066578;GBDF01260283;XR_001231713 MODEL 39131520 protein-coding PALLD palladin, cytoskeletal associated protein 9020952 protein-coding Slc35b2 solute carrier family 35 member B2 ENCODES a protein that exhibits 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity (ortholog); INVOLVED IN 3'-phosphoadenosine 5'-phosphosulfate transport (ortholog); 5'-adenylyl sulfate transmembrane transport (ortholog); chondroitin sulfate proteoglycan biosynthetic process (ortholog); ASSOCIATED WITH hypomyelinating leukodystrophy 26 (ortholog); spondyloepimetaphyseal dysplasia with joint laxity (ortholog); Treacher Collins syndrome 3 (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); membrane (ortholog) NW_004955437 9878592 9882431 - 102020711 AGCD01034548;GBDI01256888;XM_005389810 XP_005389867 MODEL 10393518 ncrna LOC106149304 uncharacterized LOC106149304 NW_004955442 16523649 16524803 + 106149304 AGCD01037901;GBDF01057613;XR_001235381 MODEL 9001975 protein-coding Ldb1 LIM domain binding 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN anterior/posterior axis specification (ortholog); cerebellar Purkinje cell differentiation (ortholog); cerebellum development (ortholog); ASSOCIATED WITH nail-patella syndrome (ortholog); FOUND IN beta-catenin-TCF complex (ortholog); cell leading edge (ortholog); chromatin (ortholog) NW_004955485 8229517 8242003 + 102022605 AGCD01058701;AGCD01058702;GBBH01031347;XM_005403862;XM_005403863;XM_005403865;XM_005403866 XP_005403919;XP_005403920;XP_005403922;XP_005403923 MODEL 8962937 ncrna LOC102024219 uncharacterized LOC102024219 NW_004955415 11233747 11246572 - 102024219 AGCD01016154;GBDK01311887;XR_001233240 MODEL 8703055 protein-coding Polr1h RNA polymerase I subunit H INVOLVED IN transcription elongation by RNA polymerase I (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH Experimental Neoplasms (ortholog); Stomach Neoplasms (ortholog); FOUND IN fibrillar center (ortholog); RNA polymerase I complex (ortholog) NW_004955583 191252 195563 + 102010006 AGCD01075801;AGCD01075802;GBDF01080016;XM_005414292;XM_005414293 XP_005414349;XP_005414350 MODEL 8855373 protein-coding Ndufv1 NADH:ubiquinone oxidoreductase core subunit V1 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); INVOLVED IN mitochondrial ATP synthesis coupled electron transport (ortholog); mitochondrial electron transport, NADH to ubiquinone (ortholog); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 8 (ortholog); Disease Progression (ortholog); genetic disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955422 17876496 17881773 - 102012442 AGCD01022932;GBDJ01074830;XM_005384306 XP_005384363 MODEL 9044197 pseudo LOC102028404 interferon-inducible double-stranded RNA-dependent protein kinase activator A pseudogene NW_004955413 9245363 9246787 + 102028404 AGCD01013901 MODEL 39133366 snorna SNORD5 small nucleolar RNA, C/D box 5 8844673 protein-coding LOC102006008 cysteine-rich secretory protein 2 NW_004955411 8242364 8257545 + 102006008 AGCD01011720;GBDF01010088;XM_005377669;XM_005377670;XM_005377671;XM_013510701;XM_013510702 XP_005377726;XP_005377727;XP_005377728;XP_013366155;XP_013366156 MODEL 9039941 protein-coding LOC102018572 uncharacterized protein C2orf78-like NW_004955409 22962231 22969880 + 102018572 AGCD01010049;GBDF01047261;XM_005376894;XM_013510259;XR_001232609 XP_005376951;XP_013365713 MODEL 8822221 protein-coding Tnfrsf1b TNF receptor superfamily member 1B ENCODES a protein that exhibits tumor necrosis factor binding (ortholog); tumor necrosis factor receptor activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN aortic valve development (ortholog); cell surface receptor signaling pathway (ortholog); cellular response to growth factor stimulus (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH acne (ortholog); acquired immunodeficiency syndrome (ortholog); Acute Experimental Pancreatitis (ortholog); FOUND IN axon (ortholog); membrane (ortholog); membrane raft (ortholog) NW_004955486 1790531 1817986 - 102026430 AGCD01058964;GBDJ01141681;XM_005403956 XP_005404013 MODEL 8742817 protein-coding Kri1 KRI1 homolog FOUND IN nucleolus (ortholog) NW_004955495 1746060 1754883 - 102007348 AGCD01061722;AGCD01061723;GBDK01139509;XM_005405604;XM_013505133;XM_013505134 XP_005405661;XP_013360587;XP_013360588 MODEL 9037096 protein-coding Scgb1a1 secretoglobin family 1A member 1 ENCODES a protein that exhibits polychlorinated biphenyl binding (ortholog); INVOLVED IN negative regulation of interleukin-13 production (ortholog); negative regulation of interleukin-4 production (ortholog); negative regulation of interleukin-5 production (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Lung Injury (ortholog); allergic rhinitis (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); nuclear envelope (ortholog) NW_004955599 688414 690644 - 102017937 AGCD01076666;GBDK01226803;XM_005414799;XM_005414800;XM_013510070 XP_005414856;XP_005414857;XP_013365524 MODEL 8894783 ncrna LOC102018165 uncharacterized LOC102018165 NW_004955409 31850420 31855944 - 102018165 AGCD01010341;AGCD01010342;GBDF01146276;XR_259800 MODEL 8944231 pseudo LOC102023917 CCAAT/enhancer-binding protein gamma-like NW_004955489 9110734 9151937 - 102023917 AGCD01060026;AGCD01060027;AGCD01060028 MODEL 8750792 protein-coding LOC102027060 taste receptor type 2 member 125-like NW_004955413 8315428 8322938 - 102027060 AGCD01013859;XM_005379637 XP_005379694 MODEL 9009767 pseudo LOC102012546 ribosome biogenesis protein NSA2 homolog pseudogene NW_004955492 272333 273124 + 102012546 AGCD01060632 MODEL 9058343 ncrna LOC102027732 uncharacterized LOC102027732 NW_004955466 11528543 11562963 + 102027732 AGCD01051096;GBDF01306465;XR_001236770;XR_263308 MODEL 10238118 ncrna LOC106146344 uncharacterized LOC106146344 NW_004955474 264430 282153 - 106146344 AGCD01054211;AGCD01054212;XR_001230744 MODEL 9022670 protein-coding LOC102003559 HRAS-like suppressor 2 NW_004955422 21458082 21474996 + 102003559 AGCD01023119;AGCD01023120;AGCD01023121;GBBH01000367;XM_005384675;XM_013514294;XM_013514295;XM_013514296 XP_005384732;XP_013369748;XP_013369749;XP_013369750 MODEL 8823269 protein-coding Bmpr1a bone morphogenetic protein receptor type 1A ENCODES a protein that exhibits ATP binding (ortholog); BMP binding (ortholog); BMP receptor activity (ortholog); INVOLVED IN angiogenesis (ortholog); anterior/posterior pattern specification (ortholog); anti-Mullerian hormone receptor signaling pathway (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH B-lymphoblastic leukemia/lymphoma with ETV6-RUNX1 (ortholog); breast cancer (ortholog); chromosome 10q23 deletion syndrome (ortholog); FOUND IN caveola (ortholog); cell surface (ortholog); dendrite (ortholog) NW_004955510 5812571 5936312 + 102011346 AGCD01066293;AGCD01066294;AGCD01066295;AGCD01066296;AGCD01066297;GBBH01207322;GBBH01207324;XM_005407907 XP_005407964 MODEL 8881247 protein-coding LOC102010146 uncharacterized LOC102010146 NW_004955471 567077 785143 + 102010146 AGCD01052962;AGCD01052963;AGCD01052964;AGCD01052965;XM_013522863 XP_013378317 MODEL 8856312 protein-coding LOC102019719 OX-2 membrane glycoprotein-like NW_004955427 12648153 12658811 + 102019719 AGCD01027222;GBDK01037625;XM_005386612 XP_005386669 MODEL 8970529 protein-coding LOC102025331 cleavage stimulation factor subunit 2 tau variant-like NW_004955462 1290389 1314225 - 102025331 AGCD01049111;AGCD01049112;XM_005398315 XP_005398372 MODEL 8976850 ncrna LOC102008991 uncharacterized LOC102008991 NW_004955551 215613 228844 - 102008991 AGCD01072651;GBDF01122997;XR_001232270;XR_001232271;XR_001232272;XR_001232273 MODEL 8861256 ncrna LOC102030178 uncharacterized LOC102030178 NW_004955414 2808970 2817386 + 102030178 AGCD01014807;GBDF01210845;XR_260149 MODEL 8823997 protein-coding Spg7 SPG7 matrix AAA peptidase subunit, paraplegin INVOLVED IN anterograde axonal transport (ortholog); mitochondrial outer membrane permeabilization involved in programmed cell death (ortholog); mitochondrion organization (ortholog); ASSOCIATED WITH hereditary spastic paraplegia 7 (ortholog); FOUND IN m-AAA complex (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955541 3092968 3141157 + 102009320 AGCD01071435;AGCD01071436;AGCD01071437;AGCD01071438;GBDF01194852;XM_005411035;XM_005411036 XP_005411092;XP_005411093 MODEL 8777207 ncrna LOC102020722 uncharacterized LOC102020722 NW_004955442 10157723 10165966 - 102020722 AGCD01037700;GBDI01368636;XR_262134 MODEL 9050946 protein-coding Esx1 ESX homeobox 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN blood vessel development (ortholog); labyrinthine layer blood vessel development (ortholog); labyrinthine layer morphogenesis (ortholog); ASSOCIATED WITH spermatogenic failure 57 (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955548 1087441 1095070 - 102004647 AGCD01072356;AGCD01072357;AGCD01072358;GBDF01189839;XM_005412009 XP_005412066 MODEL 10307036 ncrna LOC106150125 uncharacterized LOC106150125 NW_004955465 9142088 9143139 + 106150125 AGCD01050485;GBDF01235627;XR_001236744 MODEL 8701672 protein-coding LOC102009351 olfactory receptor 1361-like NW_004955408 1568710 1569651 + 102009351 AGCD01007965;XM_005376033 XP_005376090 MODEL 8796210 protein-coding Igf2r insulin like growth factor 2 receptor ENCODES a protein that exhibits cargo receptor activity (ortholog); D-mannose binding (ortholog); enzyme binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); G protein-coupled receptor signaling pathway (ortholog); Golgi to lysosome transport (ortholog); PARTICIPATES IN renin-angiotensin cascade pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); Beckwith-Wiedemann syndrome (ortholog); FOUND IN cell surface (ortholog); clathrin coat (ortholog); early endosome (ortholog) NW_004955439 20754915 20874759 - 102013547 AGCD01036128;AGCD01036129;GBCE01004858;GBCE01004865;XM_013517350 XP_013372804 MODEL 9007994 protein-coding Srpk2 SRSF protein kinase 2 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); ATP binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN angiogenesis (ortholog); intracellular signal transduction (ortholog); negative regulation of viral genome replication (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955410 9807936 10034760 - 102020224 AGCD01010776;AGCD01010777;AGCD01010778;AGCD01010779;AGCD01010780;AGCD01010781;AGCD01010782;AGCD01010783;GBDF01187645;XM_005377241;XM_005377243;XM_013510522;XM_013510524;XM_013510525;XM_013510526 XP_005377298;XP_005377300;XP_013365976;XP_013365978;XP_013365979;XP_013365980 MODEL 8711176 pseudo LOC102012100 target of rapamycin complex 2 subunit MAPKAP1-like NW_004955421 30163102 30165459 + 102012100 AGCD01022382 MODEL 8912587 protein-coding LOC102006372 olfactory receptor 13G1-like NW_004955507 6393509 6394453 + 102006372 AGCD01065713;XM_005407722 XP_005407779 MODEL 9065152 pseudo LOC102015512 vesicle-associated membrane protein 3-like NW_004955416 10951825 10952960 + 102015512 AGCD01017166 MODEL 8778797 pseudo LOC102026719 ferritin heavy chain pseudogene NW_004955407 33507353 33511021 - 102026719 AGCD01007701 MODEL 10285537 protein-coding LOC106146735 uncharacterized LOC106146735 NW_004955494 3612149 3641892 + 106146735 AGCD01061477;XM_013504922 XP_013360376 MODEL 9014440 protein-coding LOC102021508 rhox homeobox family member 1-like NW_004955711 3374 5839 - 102021508 AGCD01078141;GBDF01163219;XM_013510180 XP_013365634 MODEL 9000571 protein-coding LOC102029467 lysophospholipid acyltransferase 7-like NW_004956905 9 2515 + 102029467 AGCD01080300;GBCQ01040107;XM_005415215 XP_005415272 MODEL 39132943 misc_rna Y_RNA Y RNA 10312552 ncrna LOC106148107 uncharacterized LOC106148107 NW_004955415 30695241 30697400 + 106148107 AGCD01016666;GBCE01017306;XR_001233277 MODEL 8806181 pseudo LOC102025664 ubiquitin-like protein FUBI pseudogene NW_004955464 12489491 12489886 + 102025664 AGCD01050198 MODEL 8847927 ncrna LOC102003244 uncharacterized LOC102003244 NW_004955486 8568818 8579925 + 102003244 AGCD01059151;GBDF01224300;XR_001231117;XR_001231118;XR_001231119;XR_263964 MODEL 8864964 protein-coding Tfap4 transcription factor AP-4 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); DNA damage response, signal transduction by p53 class mediator (ortholog); negative regulation of cell population proliferation (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); transcription repressor complex (ortholog) NW_004955442 13160467 13174288 + 102014088 AGCD01037763;AGCD01037764;GBDF01250040;GBDJ01175819;XM_005391306 XP_005391363 MODEL 8978965 protein-coding Tsen54 tRNA splicing endonuclease subunit 54 INVOLVED IN tRNA splicing, via endonucleolytic cleavage and ligation (ortholog); tRNA-type intron splice site recognition and cleavage (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH amblyopia (ortholog); cerebellar hypoplasia (ortholog); Deglutition Disorders (ortholog); FOUND IN tRNA-intron endonuclease complex (ortholog) NW_004955553 2367476 2376704 + 102027464 AGCD01072935;GBDF01083927;XM_005412297;XM_013508627;XM_013508628 XP_005412354;XP_013364081;XP_013364082 MODEL 10118799 ncrna LOC106149305 uncharacterized LOC106149305 NW_004955405 16137388 16147394 + 106149305 AGCD01004962;AGCD01004963;GBCQ01159090;XR_001235383 MODEL 8979061 protein-coding LOC102003561 BPI fold-containing family A member 2-like NW_004955422 27993083 28136036 + 102003561 AGCD01023340;AGCD01023341;AGCD01023342;AGCD01023343;GBBH01222071;XM_005384852;XM_013514264;XM_013514265;XM_013514266;XM_013514267;XM_013514268;XM_013514269;XM_013514270;XM_013514271;XM_013514273;XM_013514274;XM_013514275 XP_005384909;XP_013369718;XP_013369719;XP_013369720;XP_013369721;XP_013369722;XP_013369723;XP_013369724;XP_013369725;XP_013369727;XP_013369728;XP_013369729 MODEL 8840237 protein-coding Sil1 SIL1 nucleotide exchange factor ENCODES a protein that exhibits adenyl-nucleotide exchange factor activity (ortholog); identical protein binding (ortholog); ASSOCIATED WITH cataract (ortholog); COVID-19 (ortholog); Developmental Disabilities (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955418 1322644 1583352 + 102022083 AGCD01018715;AGCD01018716;AGCD01018717;AGCD01018718;AGCD01018719;AGCD01018720;AGCD01018721;AGCD01018722;AGCD01018723;GBDF01053304;XM_005382084;XM_005382085;XM_005382087;XM_013512922;XM_013512923 XP_005382141;XP_005382142;XP_005382144;XP_013368376;XP_013368377 MODEL 626189205 snorna SNORD50B small nucleolar RNA, C/D box 50B 8958388 ncrna LOC102004599 uncharacterized LOC102004599 NW_004955415 30427848 30429710 + 102004599 AGCD01016664;GBDF01085687;XR_260328 MODEL 39133633 snrna U4 U4 spliceosomal RNA 10310911 pseudo LOC106146468 40S ribosomal protein S2 pseudogene NW_004955481 8081679 8082791 - 106146468 AGCD01057080 MODEL 10286459 ncrna LOC106150126 uncharacterized LOC106150126 NW_004955406 30062744 30261679 - 106150126 AGCD01006357;AGCD01006358;AGCD01006359;AGCD01006360;AGCD01006361;AGCD01006362;AGCD01006363;GBDI01202678;XR_001236748 MODEL 8737753 protein-coding Piwil4 piwi like RNA-mediated gene silencing 4 ENCODES a protein that exhibits molecular adaptor activity (ortholog); piRNA binding (ortholog); RNA endonuclease activity (ortholog); INVOLVED IN epithelial structure maintenance (ortholog); piRNA processing (ortholog); piRNA-mediated gene silencing by mRNA destabilization (ortholog); ASSOCIATED WITH oligospermia (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955605 331633 398528 - 102025862 AGCD01076941;AGCD01076942;AGCD01076943;AGCD01076944;GBCB01100222;GBCQ01059446;XM_013510100 XP_013365554 MODEL 8894907 protein-coding Tnfrsf21 TNF receptor superfamily member 21 INVOLVED IN adaptive immune response (ortholog); apoptotic process (ortholog); axonal fasciculation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Gliosis (ortholog); Prostatic Neoplasms (ortholog); FOUND IN plasma membrane (ortholog) NW_004955437 11877051 11915220 - 102021278 AGCD01034587;GBCE01169389;GBDK01322050;XM_013517103 XP_013372557 MODEL 10393508 ncrna LOC106147016 uncharacterized LOC106147016 NW_004955511 5528055 5530500 + 106147016 AGCD01066566;GBBH01103658;XR_001231716 MODEL 10086760 ncrna LOC106146345 uncharacterized LOC106146345 NW_004955474 2127668 2129522 + 106146345 AGCD01054277;XR_001230745 MODEL 8755196 protein-coding Phf21b PHD finger protein 21B NW_004955413 29442357 29507060 - 102026849 AGCD01014584;AGCD01014585;AGCD01014586;GBDJ01390489;XM_005379472;XM_005379473;XM_005379474 XP_005379529;XP_005379530;XP_005379531 MODEL 8940695 ncrna LOC102007466 uncharacterized LOC102007466 NW_004955532 2166348 2168036 + 102007466 AGCD01070222;GBDF01088883;XR_264727 MODEL 9030185 protein-coding Slc35b3 solute carrier family 35 member B3 ENCODES a protein that exhibits 3'-phosphoadenosine 5'-phosphosulfate transmembrane transporter activity (ortholog); INVOLVED IN 5'-adenylyl sulfate transmembrane transport (ortholog); peptidyl-tyrosine sulfation (ortholog); FOUND IN Golgi membrane (ortholog); trans-Golgi network (ortholog) NW_004955465 5599728 5621031 + 102023884 AGCD01050431;GBDF01010803;XM_005398841;XM_005398842;XM_005398843 XP_005398898;XP_005398899;XP_005398900 MODEL 9037897 pseudo LOC102024225 zinc finger protein 181-like NW_004955478 7295033 7296935 + 102024225 AGCD01055956 MODEL 8761319 protein-coding Ldb2 LIM domain binding 2 ENCODES a protein that exhibits enzyme binding (ortholog); LIM domain binding (ortholog); INVOLVED IN epithelial structure maintenance (ortholog); hair follicle development (ortholog); positive regulation of cellular component biogenesis (ortholog); FOUND IN cell leading edge (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955480 7200111 7568567 + 102009718 AGCD01056699;AGCD01056700;AGCD01056701;AGCD01056702;AGCD01056703;AGCD01056704;AGCD01056705;AGCD01056706;GBDK01093518;XM_005402501;XM_005402502;XM_005402503;XM_005402504;XM_005402505;XM_005402506;XM_005402507;XM_005402508;XM_005402509 XP_005402558;XP_005402559;XP_005402560;XP_005402561;XP_005402562;XP_005402563;XP_005402564;XP_005402565;XP_005402566 MODEL 9001480 protein-coding LOC102008992 collagen alpha-1(III) chain-like NW_004955442 14342214 14354918 - 102008992 AGCD01037812;AGCD01037813;GBDJ01377609;XM_013517858;XM_013517859;XM_013517860 XP_013373312;XP_013373313;XP_013373314 MODEL 8770789 protein-coding LOC102028406 calcyclin-binding protein-like NW_004955414 25089120 25089974 - 102028406 AGCD01015572;XM_005380259 XP_005380316 MODEL 8861987 pseudo LOC102003248 60S ribosomal protein L17 pseudogene NW_004955422 7684598 7685166 + 102003248 AGCD01022643;XM_005384099 MODEL 8852310 pseudo LOC102003562 olfactory receptor 140-like NW_004955422 257720 265363 - 102003562 AGCD01022401 MODEL 8872806 pseudo LOC102009352 DCN1-like protein 5 pseudogene NW_004955456 8139806 8140820 + 102009352 AGCD01046454 MODEL 9057637 pseudo LOC102027065 olfactory receptor 52E2-like NW_004955414 20652135 20653116 + 102027065 AGCD01015385 MODEL 8872496 protein-coding Esyt1 extended synaptotagmin 1 ENCODES a protein that exhibits identical protein binding (ortholog); phospholipid transfer activity (ortholog); INVOLVED IN intermembrane lipid transfer (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955458 3732968 3746856 + 102026723 AGCD01047340;AGCD01047341;AGCD01047342;GBCQ01033561;GBDK01346750;XM_013520965 XP_013376419 MODEL 8762871 pseudo LOC102012105 39S ribosomal protein L33, mitochondrial pseudogene NW_004955425 1338173 1339060 + 102012105 AGCD01025221;XM_005386083 MODEL 39133634 snrna U4 U4 spliceosomal RNA 8875157 protein-coding Krit1 KRIT1 ankyrin repeat containing ENCODES a protein that exhibits microtubule binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN cell redox homeostasis (ortholog); integrin activation (ortholog); negative regulation of angiogenesis (ortholog); PARTICIPATES IN integrin mediated signaling pathway; ASSOCIATED WITH Angiokeratoma Corporis Diffusum with Arteriovenous Fistulas (ortholog); cavernous hemangioma (ortholog); Cavernous Malformations of CNS and Retina (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); plasma membrane (ortholog) NW_004955432 9168678 9219947 - 102029319 AGCD01030898;GBDJ01354840;XM_005388010;XM_005388011 XP_005388067;XP_005388068 MODEL 8805685 protein-coding LOC102006374 olfactory receptor 5AL1-like NW_004955511 1550026 1550967 + 102006374 AGCD01066371;XM_005407965 XP_005408022 MODEL 8833190 protein-coding Igfals insulin like growth factor binding protein acid labile subunit ENCODES a protein that exhibits insulin-like growth factor binding (ortholog); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); cellular response to epidermal growth factor stimulus (ortholog); cellular response to growth hormone stimulus (ortholog); PARTICIPATES IN insulin-like growth factor signaling pathway; ASSOCIATED WITH Acid-Labile Subunit Deficiency (ortholog); anorexia nervosa (ortholog); Burns (ortholog); FOUND IN insulin-like growth factor ternary complex (ortholog) NW_004955442 15469602 15482115 + 102018033 AGCD01037874;AGCD01037875;GBCQ01030842;XM_005391510;XM_005391511;XM_013517676 XP_005391567;XP_005391568;XP_013373130 MODEL 8892160 protein-coding LOC102010149 olfactory receptor 52K2-like NW_004955414 21881188 21882150 - 102010149 AGCD01015436;XM_013511736 XP_013367190 MODEL 8800053 protein-coding Palm paralemmin ENCODES a protein that exhibits D3 dopamine receptor binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); cellular response to electrical stimulus (ortholog); cytoskeleton organization (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN apicolateral plasma membrane (ortholog); axon (ortholog); basolateral plasma membrane (ortholog) NW_004955495 7044942 7060022 - 102020685 AGCD01062115;GBDF01188329;XM_005406025;XM_005406026;XM_013505345;XM_013505346;XM_013505347 XP_005406082;XP_005406083;XP_013360799;XP_013360800;XP_013360801 MODEL 9053317 ncrna LOC102029470 uncharacterized LOC102029470 NW_004955404 39453013 39467616 - 102029470 AGCD01004274;XR_001234988 MODEL 8890043 protein-coding LOC102021509 keratin-associated protein 3-3 NW_004955451 15419155 15419938 - 102021509 AGCD01043607;GBDJ01056995;XM_005394379 XP_005394436 MODEL 8703813 protein-coding Bmpr1b bone morphogenetic protein receptor type 1B ENCODES a protein that exhibits ATP binding (ortholog); BMP binding (ortholog); BMP receptor activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); bone development (ortholog); camera-type eye development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH acromesomelic dysplasia 3 (ortholog); acromesomelic dysplasia, Hunter-Thompson type (ortholog); asthma (ortholog); FOUND IN dendrite (ortholog); neuronal cell body (ortholog); plasma membrane (ortholog) NW_004955405 5408171 5784930 + 102013791 AGCD01004682;AGCD01004683;AGCD01004684;AGCD01004685;AGCD01004686;AGCD01004687;GBDI01326385;XM_013517414;XM_013517415;XM_013517416;XM_013517418;XM_013517428;XM_013517431;XM_013517434;XM_013517436;XM_013517437 XP_013372868;XP_013372869;XP_013372870;XP_013372872;XP_013372882;XP_013372885;XP_013372888;XP_013372890;XP_013372891 MODEL 8716185 protein-coding Polr2a RNA polymerase II subunit A ENCODES a protein that exhibits 5'-3' RNA polymerase activity (ortholog); core promoter sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN cellular response to oxygen levels (ortholog); DNA-templated transcription termination (ortholog); positive regulation of RNA splicing (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH chronic obstructive pulmonary disease (ortholog); Developmental Disease (ortholog); genetic disease (ortholog); FOUND IN chromosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955467 9423540 9447530 - 102011523 AGCD01051511;GBCQ01005514;XM_005399484 XP_005399541 MODEL 8718195 pseudo LOC102030179 zinc finger BED domain-containing protein 1-like NW_004955469 8357587 8369632 - 102030179 AGCD01052465 MODEL 8878242 protein-coding Tfb1m transcription factor B1, mitochondrial ENCODES a protein that exhibits rRNA (adenine-N6,N6-)-dimethyltransferase activity (ortholog); S-adenosyl-L-methionine binding (ortholog); INVOLVED IN mitochondrial small ribosomal subunit assembly (ortholog); rRNA methylation (ortholog); FOUND IN mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955439 6889432 6943152 + 102021047 AGCD01035762;GBDF01155564;XM_005390549;XM_005390550 XP_005390606;XP_005390607 MODEL 8884892 pseudo LOC102018574 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-like NW_004955409 28949729 28974461 - 102018574 AGCD01010248;AGCD01010249 MODEL 8843411 protein-coding LOC102020725 proline dehydrogenase 1, mitochondrial NW_004955442 17816581 17835636 - 102020725 AGCD01037986;GBDF01118904;XM_005391721;XM_013517945 XP_005391778;XP_013373399 MODEL 8840430 protein-coding Sphk1 sphingosine kinase 1 ENCODES a protein that exhibits acetyltransferase activity (ortholog); ATP binding (ortholog); calmodulin binding (ortholog); INVOLVED IN blood vessel development (ortholog); brain development (ortholog); calcium-mediated signaling (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Fibrosis (ortholog); high grade glioma (ortholog); FOUND IN axon (ortholog); clathrin-coated pit (ortholog); cytoplasm (ortholog) NW_004955506 5902079 5906639 - 102025488 AGCD01065391;GBCE01068400;XM_013506023 XP_013361477 MODEL 8816061 pseudo LOC102024226 peptidyl-prolyl cis-trans isomerase A pseudogene NW_004955479 9843625 9844159 + 102024226 AGCD01056499 MODEL 8806112 ncrna LOC102023918 uncharacterized LOC102023918 NW_004955422 3341196 3344154 - 102023918 AGCD01022507;GBDF01113585;XR_260850 MODEL 8756228 ncrna LOC102012550 uncharacterized LOC102012550 NW_004955422 29069963 29074568 + 102012550 AGCD01023378;GBDJ01405387;XR_260929 MODEL 10210957 ncrna LOC106146587 uncharacterized LOC106146587 NW_004955485 8891754 8921397 + 106146587 AGCD01058731;AGCD01058732;GBDF01084840;XR_001231091 MODEL 8763934 protein-coding Srpk3 SRSF protein kinase 3 ENCODES a protein that exhibits protein serine/threonine kinase activity (ortholog); INVOLVED IN muscle tissue development (ortholog); protein phosphorylation (ortholog); skeletal muscle tissue development (ortholog); ASSOCIATED WITH congenital myopathy (ortholog); congenital myopathy 1B (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955580 496447 500709 + 102018243 AGCD01075607;GBCB01002736;XM_005414149;XM_005414150 XP_005414206;XP_005414207 MODEL 8764498 pseudo LOC102019720 60S acidic ribosomal protein P0 pseudogene NW_004955428 20054037 20055072 - 102019720 AGCD01028100 MODEL 8872523 protein-coding LOC102026726 glutathione S-transferase A NW_004955411 5330056 5351489 + 102026726 AGCD01011630;AGCD01011631;AGCD01011632;AGCD01011633;XM_005377652 XP_005377709 MODEL 9012408 protein-coding Tnfrsf25 TNF receptor superfamily member 25 FOUND IN plasma membrane (ortholog) NW_004955486 6121906 6127060 + 102008322 AGCD01059108;GBDK01323168;XM_005404080;XM_005404081;XM_005404082;XM_005404083;XM_005404084;XM_013504289;XM_013504290 XP_005404137;XP_005404138;XP_005404139;XP_005404140;XP_005404141;XP_013359743;XP_013359744 MODEL 10352662 ncrna LOC106146346 uncharacterized LOC106146346 NW_004955474 220923 245683 - 106146346 AGCD01054208;AGCD01054209;XR_001230746 MODEL 9059192 protein-coding LOC102006012 C-type lectin domain family 10 member A NW_004955467 9788155 9791911 + 102006012 AGCD01051525;GBDK01397253;XM_005399570 XP_005399627 MODEL 9030817 protein-coding Phf23 PHD finger protein 23 INVOLVED IN negative regulation of autophagosome assembly (ortholog); negative regulation of autophagosome maturation (ortholog); positive regulation of protein ubiquitination (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955467 9671133 9675434 + 102026514 AGCD01051521;GBDJ01230131;XM_005399540;XM_005399541 XP_005399597;XP_005399598 MODEL 8834817 pseudo LOC102018166 serine-threonine kinase receptor-associated protein-like NW_004955409 35958599 35960059 + 102018166 AGCD01010437 MODEL 9017592 ncrna LOC102008997 uncharacterized LOC102008997 NW_004955402 56853757 56893100 + 102008997 AGCD01001479;GBDF01111279;XR_001230748;XR_259106 MODEL 8984354 protein-coding Scgb1c1 secretoglobin family 1C member 1 NW_004955476 11841962 11843325 - 102003864 AGCD01055475;GBBH01206760;XM_005401893 XP_005401950 MODEL 8804625 protein-coding Sim1 SIM bHLH transcription factor 1 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); INVOLVED IN regulation of DNA-templated transcription (ortholog); ureteric bud development (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); diabetes mellitus (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog) NW_004955411 26173009 26256545 - 102025885 AGCD01012174;AGCD01012175;GBDK01307262;XM_005377811 XP_005377868 MODEL 8988138 ncrna LOC102004602 uncharacterized LOC102004602 NW_004955418 11360846 11376911 + 102004602 AGCD01019002;GBDF01041709;XR_260555 MODEL 10394539 ncrna LOC106150127 uncharacterized LOC106150127 NW_004955406 30305947 30325557 - 106150127 AGCD01006363;XR_001236749 MODEL 10364986 pseudo LOC106146736 uncharacterized LOC106146736 NW_004955494 8339244 8349607 - 106146736 AGCD01061583 MODEL 9052463 protein-coding LOC102003250 transient receptor potential cation channel subfamily V member 5 NW_004955494 693654 721271 + 102003250 AGCD01061383;GBDF01039033;XM_005405380;XM_013504911 XP_005405437;XP_013360365 MODEL 39132945 misc_rna Y_RNA Y RNA 9053788 ncrna LOC102025333 uncharacterized LOC102025333 NW_004955411 5078610 5095696 - 102025333 AGCD01011593;AGCD01011594;GBDF01153961;XR_259919 MODEL 8974723 ncrna LOC102009353 uncharacterized LOC102009353 NW_004955408 30404465 30505925 + 102009353 AGCD01008807;AGCD01008808;AGCD01008809;GBDI01286730;XR_001231749;XR_001231750;XR_259727 MODEL 8848333 protein-coding Pja1 praja ring finger ubiquitin ligase 1 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN protein catabolic process (ortholog); ASSOCIATED WITH craniofrontonasal syndrome (ortholog); FOUND IN cytoplasm (ortholog) NW_004955475 8688467 8693010 - 102016154 AGCD01055047;GBDI01173670;XM_005401595;XM_005401596 XP_005401652;XP_005401653 MODEL 10342551 ncrna LOC106148108 uncharacterized LOC106148108 NW_004955415 27211344 27215949 - 106148108 AGCD01016623;GBDF01192888;XR_001233278 MODEL 8702353 ncrna LOC102012107 uncharacterized LOC102012107 NW_004955504 1489501 1499030 + 102012107 AGCD01064841;GBDI01349444;XR_264287 MODEL 9006095 protein-coding Esyt2 extended synaptotagmin 2 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); identical protein binding (ortholog); INVOLVED IN fibroblast migration (ortholog); response to oxidative stress (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog) NW_004955579 971556 1052575 - 102006404 AGCD01075561;AGCD01075562;AGCD01075563;AGCD01075564;GBDJ01073043;XM_013509669 XP_013365123 MODEL 8854969 protein-coding Scgb3a1 secretoglobin family 3A member 1 INVOLVED IN positive regulation of myoblast fusion (ortholog); ASSOCIATED WITH endometriosis (ortholog); FOUND IN extracellular region (ortholog) NW_004955408 147777 149227 + 102026395 AGCD01007909;GBDF01053406;XM_005376000 XP_005376057 MODEL 9055678 protein-coding Tsfm Ts translation elongation factor, mitochondrial INVOLVED IN mitochondrial translational elongation (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency (ortholog); combined oxidative phosphorylation deficiency 3 (ortholog); dilated cardiomyopathy (ortholog); FOUND IN mitochondrion (ortholog) NW_004955458 5489551 5498572 + 102012162 AGCD01047494;AGCD01047495;GBDI01117542;XM_005397417;XM_005397418 XP_005397474;XP_005397475 MODEL 8956478 pseudo LOC102007468 UMP-CMP kinase pseudogene NW_004955540 3132229 3136955 - 102007468 AGCD01071335 MODEL 8859125 protein-coding LOC102006375 olfactory receptor 5B3-like NW_004955511 3661944 3662882 - 102006375 AGCD01066472;XM_005408047 XP_005408104 MODEL 39131486 protein-coding PALM2AKAP2 PALM2 and AKAP2 fusion 8748436 pseudo LOC102021510 60S ribosomal protein L36 pseudogene NW_004955403 57896896 57898033 + 102021510 AGCD01003167;XM_005373867 MODEL 616940618 snorna SNORD51 small nucleolar RNA, C/D box 51 8749281 protein-coding Ldb3 LIM domain binding 3 ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); enzyme binding (ortholog); muscle alpha-actinin binding (ortholog); INVOLVED IN sarcomere organization (ortholog); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); cardiomyopathy (ortholog); congenital myopathy (ortholog); FOUND IN cytoskeleton (ortholog); Z disc (ortholog) NW_004955510 5738254 5793643 + 102021785 AGCD01066292;AGCD01066293;GBCB01005255;XM_013506311 XP_013361765 MODEL 8700292 protein-coding Bmpr2 bone morphogenetic protein receptor type 2 ENCODES a protein that exhibits activin receptor activity, type II (ortholog); BMP binding (ortholog); BMP receptor activity (ortholog); INVOLVED IN angiogenesis (ortholog); anterior/posterior pattern specification (ortholog); aortic valve development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH asthma (ortholog); Brain Injuries (ortholog); Breast Neoplasms (ortholog); FOUND IN adherens junction (ortholog); apical plasma membrane (ortholog); axon (ortholog) NW_004955457 12235780 12315680 - 102004042 AGCD01047005;AGCD01047006;GBCB01060551;GBDF01280157;XM_013520738 XP_013376192 MODEL 8902760 pseudo LOC102003569 40S ribosomal protein S20 pseudogene NW_004955429 19247140 19249410 + 102003569 AGCD01028938 MODEL 8962982 protein-coding Ndufv2 NADH:ubiquinone oxidoreductase core subunit V2 ENCODES a protein that exhibits NADH dehydrogenase (ubiquinone) activity (ortholog); INVOLVED IN cardiac muscle tissue development (ortholog); mitochondrial electron transport, NADH to ubiquinone (ortholog); nervous system development (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); cardiomyopathy (ortholog); genetic disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955402 2802366 2818049 - 102026370 AGCD01000091;GBDF01008260;GBDI01016025;XM_013516007 XP_013371461 MODEL 8965656 protein-coding LOC102024232 small ubiquitin-related modifier 2-like NW_004955419 19430532 19431458 + 102024232 AGCD01020211;XM_013513265 XP_013368719 MODEL 8732618 ncrna LOC102027066 uncharacterized LOC102027066 NW_004955415 21060741 21086458 - 102027066 AGCD01016500;GBDF01196268;XR_260308 MODEL 10222004 ncrna LOC106146588 uncharacterized LOC106146588 NW_004955485 1149095 1149502 - 106146588 AGCD01058471;XR_001231093 MODEL 39133635 snrna U4 U4 spliceosomal RNA 10217465 ncrna LOC106149306 uncharacterized LOC106149306 NW_004955442 13048379 13055964 - 106149306 AGCD01037757;XR_001235385 MODEL 8766488 protein-coding Sim2 SIM bHLH transcription factor 2 ENCODES a protein that exhibits DNA binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN embryonic pattern specification (ortholog); lung development (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH cleft palate (ortholog); Craniofacial Abnormalities (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955407 35828250 35869067 + 102018159 AGCD01007752;AGCD01007753;GBCE01094132;GBCQ01175819;XM_013504633 XP_013360087 MODEL 10257132 ncrna LOC106147017 uncharacterized LOC106147017 NW_004955511 5518717 5521325 - 106147017 AGCD01066566;XR_001231717 MODEL 8846616 protein-coding Ldha lactate dehydrogenase A ENCODES a protein that exhibits identical protein binding (ortholog); kinase binding (ortholog); L-lactate dehydrogenase (NAD+) activity (ortholog); INVOLVED IN cellular response to phorbol 13-acetate 12-myristate (ortholog); lactate metabolic process (ortholog); liver development (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH Acute Liver Failure (ortholog); Animal Disease Models (ortholog); cardiomyopathy (ortholog); FOUND IN cytosol (ortholog); oxidoreductase complex (ortholog); sperm fibrous sheath (ortholog) NW_004955414 33087745 33100846 + 102019795 AGCD01015797;GBDF01008607;GBDJ01006869;XM_005380414 XP_005380471 MODEL 8712636 protein-coding Krr1 KRR1 small subunit processome component INVOLVED IN ribosomal small subunit biogenesis (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955405 14851602 14864838 - 102009909 AGCD01004933;GBDK01195874;XM_005374336 XP_005374393 MODEL 8716376 ncrna LOC102019721 uncharacterized LOC102019721 NW_004955429 21904557 21908894 - 102019721 AGCD01029013;GBDF01264646;XR_261379 MODEL 9045550 ncrna LOC102026728 uncharacterized LOC102026728 NW_004955411 35743718 35758196 - 102026728 AGCD01012456;GBDF01177968;XR_259956 MODEL 8876913 protein-coding Slc35b4 solute carrier family 35 member B4 ENCODES a protein that exhibits UDP-N-acetylglucosamine transmembrane transporter activity (ortholog); UDP-xylose transmembrane transporter activity (ortholog); INVOLVED IN regulation of gluconeogenesis (ortholog); UDP-N-acetylglucosamine transmembrane transport (ortholog); UDP-xylose transmembrane transport (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955410 33695985 33728749 + 102004149 AGCD01011380;AGCD01011381;AGCD01011382;AGCD01011383;AGCD01011384;GBDF01160017;XM_005377537 XP_005377594 MODEL 9014866 protein-coding Polr2b RNA polymerase II subunit B ENCODES a protein that exhibits 5'-3' RNA polymerase activity (ortholog); chromatin binding (ortholog); DNA-directed RNA polymerase activity (ortholog); INVOLVED IN transcription by RNA polymerase II (ortholog); transcription elongation by RNA polymerase II (ortholog); transcription initiation at RNA polymerase II promoter (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH esophageal atresia/tracheoesophageal fistula (ortholog); FOUND IN chromosome, telomeric region (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955447 14110182 14150556 - 102023209 AGCD01040979;AGCD01040980;AGCD01040981;AGCD01040982;AGCD01040983;AGCD01040984;AGCD01040985;GBBH01062307;XM_005392864;XM_013518517 XP_005392921;XP_013373971 MODEL 9022578 protein-coding LOC102027736 proline-rich proteoglycan 2-like NW_004955413 8506886 8698296 - 102027736 AGCD01013874;AGCD01013875;AGCD01013876;AGCD01013877;AGCD01013878;AGCD01013879;AGCD01013880;AGCD01013881;AGCD01013882;AGCD01013883;AGCD01013884;AGCD01013885;GBBH01151884;XM_013511283 XP_013366737 MODEL 8830717 ncrna LOC102015514 uncharacterized LOC102015514 NW_004955478 7571236 7583201 - 102015514 AGCD01055980;AGCD01055981;GBCE01131674;XR_001230846;XR_001230847;XR_263704 MODEL 10310677 pseudo LOC106146347 60S ribosomal protein L21 pseudogene NW_004955475 9608216 9608685 + 106146347 AGCD01055068 MODEL 8883487 protein-coding LOC102030181 transmembrane O-methyltransferase NW_004955414 19222225 19230336 - 102030181 AGCD01015308;GBDK01125604;XM_005380007;XM_013511819 XP_005380064;XP_013367273 MODEL 8856874 protein-coding Tfb2m transcription factor B2, mitochondrial ENCODES a protein that exhibits mitochondrial transcription factor activity (ortholog); INVOLVED IN mitochondrial transcription (ortholog); transcription initiation at mitochondrial promoter (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955406 9424329 9441212 - 102011173 AGCD01005819;AGCD01005820;GBCB01073815;XM_005374792 XP_005374849 MODEL 8817519 protein-coding LOC102023919 olfactory receptor-like protein OLF3 NW_004955491 303421 304356 + 102023919 AGCD01060329;XM_005404879 XP_005404936 MODEL 9021302 pseudo LOC102012551 leucine-rich repeat-containing protein 58 pseudogene NW_004955494 8245217 8247491 + 102012551 AGCD01061581 MODEL 9027686 protein-coding Sphk2 sphingosine kinase 2 ENCODES a protein that exhibits histone binding (ortholog); sphingosine kinase activity (ortholog); sphingosine-1-phosphate receptor activity (ortholog); INVOLVED IN blood vessel development (ortholog); brain development (ortholog); cellular response to phorbol 13-acetate 12-myristate (ortholog); PARTICIPATES IN ceramide signaling pathway; Fabry disease pathway; Gaucher's disease pathway; ASSOCIATED WITH Memory Disorders (ortholog); middle cerebral artery infarction (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955559 1921479 1929450 - 102007376 AGCD01073682;GBDI01222339;XM_005412942;XM_005412943;XM_005412944;XM_005412946;XM_013508996 XP_005412999;XP_005413000;XP_005413001;XP_005413003;XP_013364450 MODEL 8782074 pseudo LOC102010150 high mobility group protein B1 pseudogene NW_004955415 3445227 3445862 + 102010150 AGCD01015938 MODEL 9041449 ncrna LOC102025336 uncharacterized LOC102025336 NW_004955467 5045268 5051230 + 102025336 AGCD01051380;GBDF01145414;XR_263335;XR_263336 MODEL 39132947 misc_rna Y_RNA Y RNA 8856558 pseudo LOC102027067 60S ribosomal protein L23a pseudogene NW_004955475 9000632 9001755 + 102027067 AGCD01055054 MODEL 8730602 protein-coding LOC102003251 olfactory receptor 4C3-like NW_004955422 242830 243737 - 102003251 AGCD01022401;XM_013513877 XP_013369331 MODEL 10127638 pseudo LOC106146469 acid-sensing ion channel 2 pseudogene NW_004955481 8870712 8872015 - 106146469 AGCD01057090 MODEL 8860006 ncrna LOC102007469 uncharacterized LOC102007469 NW_004955439 19369735 19412284 - 102007469 AGCD01036083;GBDF01112984;XR_001235205;XR_261997 MODEL 9031527 protein-coding Tnfrsf4 TNF receptor superfamily member 4 ENCODES a protein that exhibits tumor necrosis factor receptor activity (ortholog); INVOLVED IN cellular defense response (ortholog); inflammatory response (ortholog); negative regulation of activation-induced cell death of T cells (ortholog); ASSOCIATED WITH autoimmune disease (ortholog); cervical squamous cell carcinoma (ortholog); dilated cardiomyopathy (ortholog); FOUND IN cell surface (ortholog); external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955486 9565424 9569836 + 102028422 AGCD01059191;GBCQ01013911;XM_005404247;XM_005404248 XP_005404304;XP_005404305 MODEL 9020056 protein-coding Esyt3 extended synaptotagmin 3 INVOLVED IN fibroblast migration (ortholog); response to oxidative stress (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-plasma membrane contact site (ortholog) NW_004955501 537195 585640 - 102016293 AGCD01064032;AGCD01064033;AGCD01064034;GBDJ01208218;GBDK01433210;XM_005406863 XP_005406920 MODEL 8954285 pseudo LOC102006015 cysteine-rich PDZ-binding protein pseudogene NW_004955469 267316 267629 + 102006015 AGCD01052216;XR_263422 MODEL 8895896 ncrna LOC102020727 uncharacterized LOC102020727 NW_004955443 19528075 19529643 - 102020727 AGCD01038628;GBDF01014155;XR_262217 MODEL 8949646 ncrna LOC102021515 uncharacterized LOC102021515 NW_004955405 40307846 40312195 - 102021515 AGCD01005512;GBDF01157665;XR_001235929;XR_259451;XR_259452 MODEL 9005788 protein-coding Tsg101 tumor susceptibility 101 ENCODES a protein that exhibits calcium-dependent protein binding (ortholog); protein homodimerization activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell differentiation (ortholog); endosome to lysosome transport (ortholog); exosomal secretion (ortholog); PARTICIPATES IN autophagy pathway; ASSOCIATED WITH breast cancer (ortholog); Breast Cancer, Familial (ortholog); breast carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); early endosome (ortholog) NW_004955414 33154812 33193769 - 102023023 AGCD01015799;AGCD01015800;GBCE01077499;XM_005380422;XM_005380423 XP_005380479;XP_005380480 MODEL 8738998 protein-coding Palm3 paralemmin 3 INVOLVED IN negative regulation of cytokine-mediated signaling pathway (ortholog); response to lipopolysaccharide (ortholog); Toll signaling pathway (ortholog) NW_004955415 32762631 32772809 - 102016155 AGCD01016732;GBDJ01276901;XM_005381146 XP_005381203 MODEL 8810062 ncrna LOC102018169 uncharacterized LOC102018169 NW_004955411 3795767 3797434 - 102018169 AGCD01011556;XR_259914 MODEL 8762248 protein-coding Phf24 PHD finger protein 24 INVOLVED IN detection of mechanical stimulus involved in sensory perception of pain (ortholog); gamma-aminobutyric acid signaling pathway (ortholog); regulation of G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); invasive ductal carcinoma (ortholog); FOUND IN glutamatergic synapse (ortholog); synaptic vesicle membrane (ortholog) NW_004955472 1186021 1204018 - 102017226 AGCD01053379;GBDF01285827;XM_005401035;XM_013523027 XP_005401092;XP_013378481 MODEL 8929960 protein-coding LOC102009002 KN motif and ankyrin repeat domain-containing protein 2-like NW_004955774 14744 24159 - 102009002 AGCD01078322;AGCD01078323;AGCD01078324;GBCQ01009072;GBDJ01022892;XM_013510190 XP_013365644 MODEL 9011618 protein-coding LOC102004603 disintegrin and metalloproteinase domain-containing protein 1a-like NW_004955482 8437339 8442885 + 102004603 AGCD01057520;GBDK01219783;XM_005403177 XP_005403234 MODEL 9042263 protein-coding Polr2c RNA polymerase II subunit C INVOLVED IN transcription by RNA polymerase II (ortholog); transcription elongation by RNA polymerase II (ortholog); transcription initiation at RNA polymerase II promoter (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH Deafness (ortholog); hereditary breast ovarian cancer syndrome (ortholog); infertility (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955433 15096324 15104435 + 102028888 AGCD01031745;GBCE01074461;XM_005388397 XP_005388454 MODEL 8859908 ncrna LOC102003575 uncharacterized LOC102003575 NW_004955433 12281187 12287342 + 102003575 AGCD01031661;XR_001234717;XR_261586 MODEL 10301205 ncrna LOC106148109 uncharacterized LOC106148109 NW_004955416 30013241 30019761 - 106148109 AGCD01017675;GBCQ01089668;XR_001233279 MODEL 8909655 protein-coding Igfbp1 insulin like growth factor binding protein 1 ENCODES a protein that exhibits insulin-like growth factor binding (ortholog); insulin-like growth factor I binding (ortholog); insulin-like growth factor II binding (ortholog); INVOLVED IN insulin receptor signaling pathway (ortholog); positive regulation of cell growth (ortholog); response to insulin (ortholog); PARTICIPATES IN forkhead class A signaling pathway; hypoxia inducible factor pathway; insulin-like growth factor signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); breast cancer (ortholog); Burns (ortholog); FOUND IN extracellular region (ortholog) NW_004955456 6810461 6814944 - 102011954 AGCD01046378;GBCQ01013594;XM_005396640 XP_005396697 MODEL 9008684 protein-coding Ndufv3 NADH:ubiquinone oxidoreductase subunit V3 INVOLVED IN mitochondrial ATP synthesis coupled electron transport (ortholog); PARTICIPATES IN forkhead class A signaling pathway; FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex I (ortholog) NW_004955407 39029943 39039425 - 102007972 AGCD01007821;GBCQ01008885;XM_005375804;XM_005375805;XM_005375806;XM_013505043 XP_005375861;XP_005375862;XP_005375863;XP_013360497 MODEL 8832805 protein-coding Bms1 BMS1 ribosome biogenesis factor INVOLVED IN ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH ectodermal dysplasia (ortholog); nonsyndromic aplasia cutis congenita (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955546 1054208 1089048 + 102004325 AGCD01072039;AGCD01072040;GBDF01089574;XM_005411758;XM_005411759;XM_005411761 XP_005411815;XP_005411816;XP_005411818 MODEL 8936487 protein-coding Pja2 praja ring finger ubiquitin ligase 2 ENCODES a protein that exhibits cAMP-dependent protein kinase inhibitor activity (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN inflammatory response (ortholog); innate immune response (ortholog); long-term memory (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955418 5429038 5493393 + 102020120 AGCD01018843;AGCD01018844;GBCQ01002274;XM_005382175 XP_005382232 MODEL 8930574 protein-coding LOC102012115 retinal dehydrogenase 1-like NW_004955512 5973700 6028923 - 102012115 AGCD01066790;AGCD01066791;AGCD01066792;AGCD01066793;AGCD01066794;AGCD01066795;AGCD01066796;AGCD01066797;AGCD01066798;AGCD01066799;AGCD01066800;AGCD01066801;GBCQ01010585;GBDK01002218;XM_013506549 XP_013362003 MODEL 10377272 ncrna LOC106149307 uncharacterized LOC106149307 NW_004955442 6998914 7007770 - 106149307 AGCD01037609;GBDI01089295;XR_001235386;XR_001235387 MODEL 8778310 protein-coding Scgb3a2 secretoglobin family 3A member 2 ASSOCIATED WITH allergic rhinitis (ortholog); asthma (ortholog); Lung Neoplasms (ortholog); FOUND IN extracellular region (ortholog) NW_004955415 6332121 6335474 - 102010993 AGCD01016014;GBDK01002570;XM_005380654;XM_013512103 XP_005380711;XP_013367557 MODEL 8779862 protein-coding LOC102006376 olfactory receptor 5L1-like NW_004955511 671617 672567 + 102006376 AGCD01066337;XM_005408205 XP_005408262 MODEL 8882146 protein-coding LOC102018575 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955460 9790084 9814789 - 102018575 AGCD01048552;AGCD01048553;AGCD01048554;AGCD01048555;GBBH01072462;GBDJ01273101;XM_013521140 XP_013376594 MODEL 8968484 protein-coding LOC102025337 olfactory receptor 150-like NW_004955412 24941616 24942575 + 102025337 AGCD01013131;XM_005378642 XP_005378699 MODEL 8774186 protein-coding LOC102026729 putative vomeronasal receptor-like protein 4 NW_004955465 12788822 12794446 + 102026729 AGCD01050560;AGCD01050561;XM_005398995 XP_005399052 MODEL 8790878 ncrna LOC102025665 uncharacterized LOC102025665 NW_004955411 35579738 35590349 - 102025665 AGCD01012441;AGCD01012442;AGCD01012443;XR_259955 MODEL 10192167 pseudo LOC106146348 centromere protein H-like NW_004955475 1159410 1160189 + 106146348 AGCD01054736 MODEL 9001219 protein-coding Pjvk pejvakin INVOLVED IN detection of mechanical stimulus involved in sensory perception of sound (ortholog); pexophagy (ortholog); programmed cell death in response to reactive oxygen species (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 59 (ortholog); beta thalassemia (ortholog); FOUND IN ciliary rootlet (ortholog); cortical actin cytoskeleton (ortholog); cytoplasm (ortholog) NW_004955403 18386705 18393771 - 102027256 AGCD01002098;GBDJ01222619;XM_005373379 XP_005373436 MODEL 10381721 ncrna LOC106150128 uncharacterized LOC106150128 NW_004955465 9790977 9794654 + 106150128 AGCD01050495;XR_001236753 MODEL 10092319 ncrna LOC106146737 uncharacterized LOC106146737 NW_004955494 2456690 2463487 - 106146737 AGCD01061438;GBDF01261720;XR_001231295 MODEL 8789612 ncrna LOC102029471 uncharacterized LOC102029471 NW_004955452 8783424 8806723 - 102029471 AGCD01044227;AGCD01044228;GBDF01144022;XR_262667;XR_262668 MODEL 39133636 snrna U4 U4 spliceosomal RNA 10152481 protein-coding LOC106146589 skin secretory protein xP2-like NW_004955485 7227665 7228918 + 106146589 AGCD01058648;GBDF01044599;XM_013504122 XP_013359576 MODEL 8913058 protein-coding LOC102028407 olfactory receptor 52J3-like NW_004955414 20738333 20739274 + 102028407 AGCD01015388;XM_005380479 XP_005380536 MODEL 9012150 protein-coding LOC102024233 glutathione S-transferase omega-2 NW_004955485 6370505 6390718 - 102024233 AGCD01058616;AGCD01058617;AGCD01058618;GBDF01002229;XM_005403780 XP_005403837 MODEL 8884648 protein-coding Simc1 SUMO interacting motifs containing 1 ENCODES a protein that exhibits peptidase inhibitor activity (ortholog); SUMO polymer binding (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); PML body (ortholog) NW_004955408 28562372 28630420 + 102009467 AGCD01008716;AGCD01008717;AGCD01008718;AGCD01008719;AGCD01008720;AGCD01008721;GBDF01002279;XM_005376371;XM_005376372 XP_005376428;XP_005376429 MODEL 10315924 ncrna LOC106147018 uncharacterized LOC106147018 NW_004955511 6378645 6379891 + 106147018 AGCD01066606;GBDF01010791;XR_001231718 MODEL 8802097 protein-coding Krt1 keratin 1 ENCODES a protein that exhibits carbohydrate binding (ortholog); protein heterodimerization activity (ortholog); structural constituent of skin epidermis (ortholog); INVOLVED IN complement activation, lectin pathway (ortholog); cornification (ortholog); establishment of skin barrier (ortholog); ASSOCIATED WITH Annular Epidermolytic Ichthyosis (ortholog); Annular Epidermolytic Ichthyosis 1 (ortholog); Annular Epidermolytic Ichthyosis 2 (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); keratin filament (ortholog) NW_004955458 25193 29282 - 102011843 AGCD01047104;AGCD01047105;GBCB01074334;XM_013521011 XP_013376465 MODEL 8933691 protein-coding Slc35c1 solute carrier family 35 member C1 ENCODES a protein that exhibits GDP-fucose transmembrane transporter activity (ortholog); INVOLVED IN 'de novo' GDP-L-fucose biosynthetic process (ortholog); GDP-fucose import into Golgi lumen (ortholog); GDP-L-fucose salvage (ortholog); ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIc (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955422 2130561 2139145 - 102019508 AGCD01022480;AGCD01022481;GBDK01090342;XM_005384067;XM_005384068;XM_005384069;XM_005384070 XP_005384124;XP_005384125;XP_005384126;XP_005384127 MODEL 9008869 protein-coding LOC102015516 prothymosin alpha-like NW_004955416 16038061 16038444 - 102015516 AGCD01017348;XM_005381702 XP_005381759 MODEL 8791414 pseudo LOC102021516 chromodomain Y-like protein pseudogene NW_004955405 15378726 15379619 + 102021516 AGCD01004944 MODEL 9036914 pseudo LOC102009355 transcription elongation factor B polypeptide 1 pseudogene NW_004955459 15151409 15153569 + 102009355 AGCD01048312 MODEL 8744266 ncrna LOC102012556 uncharacterized LOC102012556 NW_004955500 5638086 5640274 - 102012556 AGCD01063847;GBDF01250373;XR_264229 MODEL 8700755 ncrna LOC102023920 uncharacterized LOC102023920 NW_004955422 16265263 16269498 + 102023920 AGCD01022894;GBDF01193207;XR_260890 MODEL 8707995 protein-coding LOC102018173 protein SPT2 homolog NW_004955412 18553976 18555107 + 102018173 AGCD01012944;AGCD01012945;GBDF01021744;XM_013510975 XP_013366429 MODEL 8740892 protein-coding LOC102009003 glutamate receptor ionotropic, NMDA 2C NW_004956136 343 7674 - 102009003 AGCD01079116;GBCQ01125682;XM_005415170 XP_005415227 MODEL 8783294 protein-coding Palmd palmdelphin ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955435 4464969 4519683 + 102029550 AGCD01032832;GBDF01280632;XM_005388787 XP_005388844 MODEL 8759634 protein-coding Sphkap SPHK1 interactor, AKAP domain containing ENCODES a protein that exhibits protein kinase A binding (ortholog); ASSOCIATED WITH congestive heart failure (ortholog); FOUND IN mitochondrion (ortholog); Z disc (ortholog) NW_004955453 6530796 6701189 + 102005335 AGCD01044722;AGCD01044723;AGCD01044724;AGCD01044725;AGCD01044726;AGCD01044727;GBDK01147355;XM_005395434;XM_013519982;XM_013519983;XM_013519984;XM_013519985 XP_005395491;XP_013375436;XP_013375437;XP_013375438;XP_013375439 MODEL 9057401 protein-coding LOC102019722 vomeronasal type-1 receptor 90-like NW_004955429 12528002 12528931 + 102019722 AGCD01028725;XM_005387253 XP_005387310 MODEL 10362250 ncrna LOC106146738 uncharacterized LOC106146738 NW_004955407 37768503 37777935 + 106146738 AGCD01007785;XR_001231300 MODEL 8968574 protein-coding LOC102003578 telomerase protein component 1-like NW_004955433 39594 81672 + 102003578 AGCD01031301;XM_013516101 XP_013371555 MODEL 8886070 ncrna LOC102027076 uncharacterized LOC102027076 NW_004955489 3991209 4000973 - 102027076 AGCD01059896;GBCB01110160;XR_001231185;XR_264018 MODEL 9050824 ncrna LOC102003254 uncharacterized LOC102003254 NW_004955423 19319841 19322762 - 102003254 AGCD01023889;GBDF01056704;XR_260982 MODEL 8828644 pseudo LOC102027737 WW domain-binding protein 4 pseudogene NW_004955414 1197051 1198236 - 102027737 AGCD01014759 MODEL 9013757 protein-coding LOC102028408 chromosome unknown open reading frame, human C5orf63 ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); substance-related disorder (ortholog); FOUND IN mitochondrion (ortholog) NW_004955415 144503 163777 - 102028408 AGCD01015832;GBDK01341602;XM_005380540;XM_005380541;XM_013512356;XM_013512357;XM_013512358 XP_005380597;XP_005380598;XP_013367810;XP_013367811;XP_013367812 MODEL 8849571 protein-coding LOC102030182 olfactory receptor 51B2-like NW_004955414 21239175 21240121 - 102030182 AGCD01015411;XM_005380079 XP_005380136 MODEL 8970010 protein-coding Tnfrsf6b TNF receptor superfamily member 6b ENCODES a protein that exhibits receptor decoy activity (ortholog); ASSOCIATED WITH neuronal ceroid lipofuscinosis (ortholog); FOUND IN decoy receptor complex (ortholog) NW_004955528 529817 531577 - 102007051 AGCD01069537;GBCE01057126;XM_005409952 XP_005410009 MODEL 8811103 ncrna LOC102006378 uncharacterized LOC102006378 NW_004955431 11018368 11079905 + 102006378 AGCD01030216;AGCD01030217;AGCD01030218;AGCD01030219;AGCD01030220;AGCD01030221;AGCD01030222;AGCD01030223;GBDF01303264;XR_001234572;XR_261463 MODEL 8736249 protein-coding Neb nebulin ASSOCIATED WITH Actin-Accumulation Myopathy (ortholog); arthrogryposis multiplex congenita-6 (ortholog); congenital muscular dystrophy (ortholog); FOUND IN myofibril (ortholog); protein-containing complex (ortholog); Z disc (ortholog) NW_004955440 17060303 17259558 - 102005512 AGCD01036558;AGCD01036559;AGCD01036560;AGCD01036561;AGCD01036562;AGCD01036563;GBDF01053409;XM_013517490 XP_013372944 MODEL 8746012 protein-coding Srpra SRP receptor subunit alpha ASSOCIATED WITH Shwachman-Diamond syndrome (ortholog); FOUND IN membrane (ortholog); signal recognition particle receptor complex (ortholog) NW_004955412 27287359 27293362 - 102003852 AGCD01013233;GBDF01049869;XM_005378499 XP_005378556 MODEL 8872307 pseudo LOC102018577 cold shock domain-containing protein E1-like NW_004955411 12520079 12522603 + 102018577 AGCD01011850 MODEL 8924879 protein-coding Tsga10 testis specific 10 ENCODES a protein that exhibits structural molecule activity (ortholog); ASSOCIATED WITH spermatogenic failure 26 (ortholog); FOUND IN centriole (ortholog); cytoplasm (ortholog); motile cilium (ortholog) NW_004955470 5376749 5471904 - 102008086 AGCD01052749;AGCD01052750;AGCD01052751;GBDI01255512;XM_005400731;XM_005400734;XM_013522795;XM_013522796;XM_013522797;XM_013522799;XM_013522800 XP_005400788;XP_005400791;XP_013378249;XP_013378250;XP_013378251;XP_013378253;XP_013378254 MODEL 8974264 protein-coding Krt10 keratin 10 ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); protein heterodimerization activity (ortholog); structural constituent of skin epidermis (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); cornification (ortholog); epidermis development (ortholog); ASSOCIATED WITH Annular Epidermolytic Ichthyosis (ortholog); Annular Epidermolytic Ichthyosis 1 (ortholog); Arsenic Poisoning (ortholog); FOUND IN cell surface (ortholog); cornified envelope (ortholog); cytoplasm (ortholog) NW_004955451 15269861 15274351 - 102019233 AGCD01043604;GBCC01000847;XM_005394374;XM_013519176 XP_005394431;XP_013374630 MODEL 8714317 protein-coding Tfcp2 transcription factor CP2 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN mRNA transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of transcription by RNA polymerase II (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955547 1608631 1675331 - 102021920 AGCD01072234;AGCD01072235;AGCD01072236;AGCD01072237;AGCD01072238;AGCD01072239;GBDI01324425;GBDJ01132761;XM_005411895 XP_005411952 MODEL 8732465 protein-coding Phf3 PHD finger protein 3 ASSOCIATED WITH autism spectrum disorder (ortholog); intellectual disability (ortholog); Neurodevelopmental Disorders (ortholog) NW_004955502 195332 271749 - 102021992 AGCD01064232;GBCQ01101060;GBDF01122588;XM_013505825;XM_013505826 XP_013361279;XP_013361280 MODEL 8836535 pseudo LOC102025666 ADP-ribosylation factor 1 pseudogene NW_004955465 10536065 10536848 - 102025666 AGCD01050510;XR_263267 MODEL 39132948 misc_rna Y_RNA Y RNA 8800117 protein-coding Polr2d RNA polymerase II subunit D INVOLVED IN transcription by RNA polymerase II (ortholog); transcription elongation by RNA polymerase II (ortholog); transcription initiation at RNA polymerase II promoter (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955459 2687005 2696388 + 102022472 AGCD01047996;GBCE01096350;XM_005397575 XP_005397632 MODEL 10375197 ncrna LOC106146590 uncharacterized LOC106146590 NW_004955486 8483638 8484334 + 106146590 AGCD01059151;GBDF01114112;XR_001231095 MODEL 39133637 snrna U4 U4 spliceosomal RNA 10247316 ncrna LOC106146470 uncharacterized LOC106146470 NW_004955406 42526322 42531688 - 106146470 AGCD01006711;GBDK01402644;XR_001230917 MODEL 9044936 protein-coding Bmt2 base methyltransferase of 25S rRNA 2 homolog ENCODES a protein that exhibits protein-containing complex binding (ortholog); S-adenosyl-L-methionine binding (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); cellular response to methionine (ortholog); positive regulation of TORC1 signaling (ortholog) NW_004955432 19046121 19107178 - 102003997 AGCD01031165;AGCD01031166;AGCD01031167;GBDF01192648;GBDJ01278833;XM_013516035 XP_013371489 MODEL 10315073 ncrna LOC106149308 uncharacterized LOC106149308 NW_004955442 9387419 9390552 - 106149308 AGCD01037679;GBDI01380847;XR_001235394 MODEL 8773662 protein-coding Igfbp2 insulin like growth factor binding protein 2 ENCODES a protein that exhibits insulin-like growth factor binding (ortholog); insulin-like growth factor I binding (ortholog); insulin-like growth factor II binding (ortholog); INVOLVED IN cellular response to hormone stimulus (ortholog); female pregnancy (ortholog); osteoblast differentiation (ortholog); PARTICIPATES IN insulin-like growth factor signaling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Alzheimer's disease (ortholog); contact dermatitis (ortholog); FOUND IN apical plasma membrane (ortholog); extracellular region (ortholog) NW_004955453 16556873 16584737 - 102022252 AGCD01044905;AGCD01044906;AGCD01044907;GBCQ01008031;GBDI01223674;XM_013519997 XP_013375451 MODEL 8940553 protein-coding LOC102025342 olfactory receptor 10T2 NW_004955468 10264851 10265798 - 102025342 AGCD01052075;XM_005400149 XP_005400206 MODEL 8924299 protein-coding Sin3a SIN3 transcription regulator family member A ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN activation of innate immune response (ortholog); cellular response to dopamine (ortholog); cellular response to glucose stimulus (ortholog); PARTICIPATES IN DNA modification pathway; Hedgehog signaling pathway; ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN chromatin (ortholog); histone deacetylase complex (ortholog); kinetochore (ortholog) NW_004955450 2804551 2870450 + 102027592 AGCD01042407;AGCD01042408;AGCD01042409;AGCD01042410;GBDI01010558;XM_005393507;XM_013518961 XP_005393564;XP_013374415 MODEL 10271807 ncrna LOC106146591 uncharacterized LOC106146591 NW_004955486 6581646 6583023 + 106146591 AGCD01059120;GBDF01114257;XR_001231096 MODEL 8987272 protein-coding Spi1 Spi-1 proto-oncogene ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN anatomical structure regression (ortholog); apoptotic process involved in blood vessel morphogenesis (ortholog); cellular response to ethanol (ortholog); PARTICIPATES IN DNA modification pathway; interleukin-4 signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); agammaglobulinemia (ortholog); agammaglobulinemia 10 (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955422 873735 886560 + 102022823 AGCD01022440;AGCD01022441;AGCD01022442;GBDK01006523;XM_005383976 XP_005384033 MODEL 8886949 protein-coding Etaa1 ETAA1 activator of ATR kinase ENCODES a protein that exhibits protein serine/threonine kinase activator activity (ortholog); INVOLVED IN DNA damage response (ortholog); mitotic G2/M transition checkpoint (ortholog); positive regulation of protein serine/threonine kinase activity (ortholog); ASSOCIATED WITH pancreatic cancer (ortholog); FOUND IN nuclear replication fork (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955424 17271690 17321276 - 102025480 AGCD01024759;GBDF01261344;XM_005385677;XM_005385678;XR_001234226;XR_001234227;XR_001234228;XR_001234229;XR_001234230;XR_001234231;XR_001234232;XR_001234233;XR_001234234;XR_001234235;XR_001234236;XR_001234237;XR_261075 XP_005385734;XP_005385735 MODEL 8704236 protein-coding LOC102004604 olfactory receptor 1N1-like NW_004955419 5180021 5180950 - 102004604 AGCD01019787;XM_013513100 XP_013368554 MODEL 8816755 pseudo LOC102015517 60S ribosomal protein L17 pseudogene NW_004955417 26639628 26640154 - 102015517 AGCD01018514 MODEL 10075817 pseudo LOC106146349 uncharacterized LOC106146349 NW_004955475 7943808 7950579 + 106146349 AGCD01055024 MODEL 8756365 protein-coding Ldhal6b lactate dehydrogenase A like 6B INVOLVED IN lactate metabolic process (ortholog); PARTICIPATES IN malonic aciduria pathway; methylmalonic aciduria, cobalamin-related pathway; propanoate metabolic pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog) NW_004955439 4954208 4956660 + 102017061 AGCD01035722;GBDF01048272;XM_005390536 XP_005390593 MODEL 8799074 ncrna LOC102009360 uncharacterized LOC102009360 NW_004955410 29294602 29317106 + 102009360 AGCD01011281;AGCD01011282;GBCQ01057489;XR_001232714 MODEL 151707875 snorna SNORD52 small nucleolar RNA, C/D box 52 8865674 pseudo LOC102012558 non-histone chromosomal protein HMG-17 pseudogene NW_004955426 25793912 25801578 + 102012558 AGCD01026728 MODEL 8939684 protein-coding Nebl nebulette ENCODES a protein that exhibits actin filament binding (ortholog); cytoskeletal protein binding (ortholog); filamin binding (ortholog); INVOLVED IN cardiac muscle thin filament assembly (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); cardiomyopathy (ortholog); Digeorge Syndrome/Velocardiofacial Syndrome Complex 2 (ortholog); FOUND IN cytoplasm (ortholog); stress fiber (ortholog); Z disc (ortholog) NW_004955429 7559994 7730683 + 102020691 AGCD01028597;AGCD01028598;AGCD01028599;AGCD01028600;AGCD01028601;GBDJ01400345;XM_013515481;XM_013515482;XM_013515483;XM_013515484 XP_013370935;XP_013370936;XP_013370937;XP_013370938 MODEL 8720621 ncrna LOC102020731 uncharacterized LOC102020731 NW_004955447 18643804 18688153 + 102020731 AGCD01041182;AGCD01041183;AGCD01041184;GBCE01132641;XR_001235746;XR_001235747;XR_001235748 MODEL 8841804 pseudo LOC102025669 egl nine homolog 2 pseudogene NW_004955467 5248847 5250740 + 102025669 AGCD01051382 MODEL 9001139 ncrna LOC102024234 uncharacterized LOC102024234 NW_004955420 11214960 11288694 - 102024234 AGCD01020801;GBBH01078303;XR_260703 MODEL 8959937 ncrna LOC102012121 uncharacterized LOC102012121 NW_004955435 13285870 13323570 + 102012121 AGCD01033200;GBDF01292749;XR_001234893;XR_001234894;XR_261685 MODEL 10299374 protein-coding LOC106147019 isoaspartyl peptidase/L-asparaginase-like NW_004955511 6383577 6392535 + 106147019 AGCD01066606;AGCD01066607;AGCD01066608;AGCD01066609;GBDI01176415;XM_013506512 XP_013361966 MODEL 9065567 protein-coding Scgn secretagogin, EF-hand calcium binding protein FOUND IN cytosol (ortholog) NW_004955483 1392772 1429563 - 102003448 AGCD01057645;AGCD01057646;GBDI01027898;XM_005403346 XP_005403403 MODEL 9026633 pseudo LOC102026733 60S ribosomal protein L5-like NW_004955467 241187 242264 + 102026733 AGCD01051215 MODEL 8723578 pseudo LOC102019723 40S ribosomal protein S2 pseudogene NW_004955430 2621172 2623152 + 102019723 AGCD01029168;XR_261413 MODEL 8900518 ncrna LOC102027739 uncharacterized LOC102027739 NW_004955414 33778690 33781911 - 102027739 AGCD01015827;GBDF01080101;XR_001233078;XR_001233079;XR_001233080 MODEL 8837191 protein-coding Tnfrsf8 TNF receptor superfamily member 8 ENCODES a protein that exhibits protease binding (ortholog); INVOLVED IN canonical NF-kappaB signal transduction (ortholog); cellular response to mechanical stimulus (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH AIDS-Related Opportunistic Infections (ortholog); anaplastic large cell lymphoma (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog) NW_004955486 1839642 1910080 - 102026750 AGCD01058964;AGCD01058965;AGCD01058966;AGCD01058967;AGCD01058968;AGCD01058969;AGCD01058970;AGCD01058971;AGCD01058972;GBDF01016443;GBDK01097531;XM_013504324;XM_013504325;XM_013504326 XP_013359778;XP_013359779;XP_013359780 MODEL 8740934 ncrna LOC102010158 uncharacterized LOC102010158 NW_004955417 26308543 26333124 + 102010158 AGCD01018505;GBBH01097094;XR_001233384;XR_001233385 MODEL 10211833 protein-coding LOC106148110 uncharacterized LOC106148110 NW_004955416 26816075 26821364 + 106148110 AGCD01017606;GBDF01266389;XM_013512408;XR_001233283 XP_013367862 MODEL 8968612 protein-coding Pkd1 polycystin 1, transient receptor potential channel interacting ENCODES a protein that exhibits calcium channel activity (ortholog); monoatomic cation channel activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN blood vessel development (ortholog); branching morphogenesis of an epithelial tube (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH 46, XY Disorders of Sex Development (ortholog); Abnormal Cortical Gyration (ortholog); Animal Disease Models (ortholog); FOUND IN basolateral plasma membrane (ortholog); calcium channel complex (ortholog); cation channel complex (ortholog) NW_004955442 15132555 15178377 + 102007374 AGCD01037860;GBBH01090152;GBBH01090234;XM_013517656 XP_013373110 MODEL 8900413 protein-coding LOC102023921 uncharacterized LOC102023921 NW_004955492 4798372 4799798 + 102023921 AGCD01060732;GBDF01021543;XM_005405018 XP_005405075 MODEL 8753054 protein-coding Tfcp2l1 transcription factor CP2 like 1 ENCODES a protein that exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell morphogenesis (ortholog); cytoplasm organization (ortholog); determination of adult lifespan (ortholog); ASSOCIATED WITH chronic kidney disease (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); nucleus (ortholog) NW_004955459 8657188 8716878 + 102015292 AGCD01048145;GBCQ01006055;XM_005397647;XM_005397648 XP_005397704;XP_005397705 MODEL 8736405 protein-coding LOC102006019 olfactory receptor 51I2-like NW_004955414 21379795 21380742 - 102006019 AGCD01015417;XM_005380088 XP_005380145 MODEL 8926827 protein-coding Pals1 protein associated with LIN7 1, MAGUK p55 family member ENCODES a protein that exhibits identical protein binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN central nervous system neuron development (ortholog); cerebral cortex development (ortholog); gene expression (ortholog); ASSOCIATED WITH Leber congenital amaurosis (ortholog); FOUND IN adherens junction (ortholog); apical part of cell (ortholog); apical plasma membrane (ortholog) NW_004955466 2871445 2937296 - 102016363 AGCD01050769;AGCD01050770;AGCD01050771;AGCD01050772;GBCC01005065;GBCQ01041221;XM_013522001 XP_013377455 MODEL 8996263 ncrna LOC102003579 uncharacterized LOC102003579 NW_004955522 3869752 3871054 + 102003579 AGCD01068402;GBDI01286574;XR_264629 MODEL 8934652 protein-coding Polr2e RNA polymerase II, I and III subunit E INVOLVED IN termination of RNA polymerase III transcription (ortholog); transcription by RNA polymerase II (ortholog); transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH Dwarfism (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase I complex (ortholog) NW_004955495 6779557 6788241 + 102012554 AGCD01062093;AGCD01062094;GBDJ01005001;XM_005405996 XP_005406053 MODEL 8924396 pseudo LOC102030185 60S ribosomal protein L27a pseudogene NW_004955414 16039108 16039928 - 102030185 AGCD01015197;XR_260238 MODEL 10329527 ncrna LOC106150129 uncharacterized LOC106150129 NW_004955465 12602957 12617239 + 106150129 AGCD01050550;AGCD01050551;GBCQ01183964;XR_001236754 MODEL 8991492 pseudo LOC102006382 non-histone chromosomal protein HMG-14 pseudogene NW_004955515 1139391 1139869 - 102006382 AGCD01067220 MODEL 8812304 protein-coding LOC102021518 dimethylaniline monooxygenase [N-oxide-forming] 3 NW_004955406 11764264 11781996 + 102021518 AGCD01005895;AGCD01005896;GBBH01063317;XM_005374830 XP_005374887 MODEL 10097573 protein-coding LOC106146592 PRAME family member 12-like NW_004955486 205124 207742 + 106146592 AGCD01058822;XM_013504135 XP_013359589 MODEL 8976319 ncrna LOC102018579 uncharacterized LOC102018579 NW_004955412 17854861 17864100 - 102018579 AGCD01012919;GBDF01209681;XR_259997 MODEL 8952536 pseudo LOC102025343 40S ribosomal protein S7 pseudogene NW_004955469 6328707 6329270 + 102025343 AGCD01052380 MODEL 8731632 protein-coding LOC102018178 olfactory receptor 10T2-like NW_004955414 23717094 23718032 + 102018178 AGCD01015518;XM_005380522 XP_005380579 MODEL 8846731 protein-coding Srprb SRP receptor subunit beta ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic microtubule (ortholog); membrane (ortholog) NW_004955501 4784266 4796587 - 102026890 AGCD01064145;GBDF01046594;XM_005406808 XP_005406865 MODEL 9066198 ncrna LOC102009007 uncharacterized LOC102009007 NW_004955404 50480603 50488989 + 102009007 AGCD01004531;GBDF01057260;XR_259345 MODEL 8876699 protein-coding Spib Spi-B transcription factor ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN immature B cell differentiation (ortholog); macrophage differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Mycoplasma pneumoniae pneumonia (ortholog); primary biliary cholangitis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955559 705809 711407 - 102019209 AGCD01073609;GBBH01186641;XM_005412785;XM_005412786;XM_013509028;XM_013509029;XM_013509030 XP_005412842;XP_005412843;XP_013364482;XP_013364483;XP_013364484 MODEL 8811067 protein-coding Krt17 keratin 17 INVOLVED IN hair follicle morphogenesis (ortholog); intermediate filament organization (ortholog); keratinization (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); Chloracne (ortholog); ectodermal dysplasia (ortholog); FOUND IN cell periphery (ortholog); cornified envelope (ortholog); cytoplasm (ortholog) NW_004955451 15940137 15944392 - 102005549 AGCD01043641;GBCQ01154543;XM_005394413 XP_005394470 MODEL 39132949 misc_rna Y_RNA Y RNA 8896374 protein-coding LOC102007471 very-long-chain 3-oxoacyl-CoA reductase-B-like NW_004955555 2234031 2248419 + 102007471 AGCD01073138;AGCD01073139;AGCD01073140;GBDF01155567;XM_005412503 XP_005412560 MODEL 10163394 protein-coding LOC106146350 uncharacterized protein CXorf49-like NW_004955475 11208280 11208743 - 106146350 AGCD01055145;GBDF01039805;XM_013502810 XP_013358264 MODEL 151707879 snorna SNORD53 small nucleolar RNA, C/D box 53 8930918 ncrna LOC102027086 uncharacterized LOC102027086 NW_004955425 17089911 17100979 + 102027086 AGCD01025630;GBDF01208572;XR_001234267;XR_261154 MODEL 9028095 ncrna LOC102003258 uncharacterized LOC102003258 NW_004955424 19212442 19216315 - 102003258 AGCD01024810;GBDF01079876;XR_261081 MODEL 8853523 ncrna LOC102012559 uncharacterized LOC102012559 NW_004955427 8687167 8694960 + 102012559 AGCD01027076;GBDF01110884;XR_001234415;XR_261242 MODEL 10385963 ncrna LOC106146471 uncharacterized LOC106146471 NW_004955481 4677673 4706527 + 106146471 AGCD01056949;XR_001230918 MODEL 8873427 pseudo LOC102028414 PC4 and SFRS1-interacting protein pseudogene NW_004955417 2951728 2952986 + 102028414 AGCD01017897 MODEL 9004493 protein-coding Pkd1l1 polycystin 1 like 1, transient receptor potential channel interacting INVOLVED IN detection of nodal flow (ortholog); determination of left/right symmetry (ortholog); heart development (ortholog); ASSOCIATED WITH autistic disorder (ortholog); congenital chylothorax (ortholog); genetic disease (ortholog); FOUND IN calcium channel complex (ortholog); ciliary membrane (ortholog); cilium (ortholog) NW_004955456 5497126 5582342 + 102007085 AGCD01046333;AGCD01046334;AGCD01046335;AGCD01046336;AGCD01046337;AGCD01046338;GBCE01121174;XM_013520637 XP_013376091 MODEL 10082238 ncrna LOC106149309 uncharacterized LOC106149309 NW_004955442 530303 542943 + 106149309 AGCD01037426;GBDI01328496;XR_001235395 MODEL 8922706 ncrna LOC102026738 uncharacterized LOC102026738 NW_004955468 12862925 12866411 - 102026738 AGCD01052190;GBDF01249165;XR_001236891;XR_001236892;XR_263419 MODEL 8794937 protein-coding Slc35c2 solute carrier family 35 member C2 INVOLVED IN negative regulation of gene expression (ortholog); positive regulation of Notch signaling pathway (ortholog); protein O-linked glycosylation via fucose (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog); endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog) NW_004955445 10984675 10996707 + 102019861 AGCD01039680;GBDF01155404;XM_005392381;XM_005392383;XM_013518297;XM_013518298;XM_013518299;XM_013518300;XM_013518301;XM_013518302 XP_005392438;XP_005392440;XP_013373751;XP_013373752;XP_013373753;XP_013373754;XP_013373755;XP_013373756 MODEL 8738192 protein-coding Pals2 protein associated with LIN7 2, MAGUK p55 family member PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955410 26593123 26697553 + 102020988 AGCD01011196;AGCD01011197;AGCD01011198;AGCD01011199;GBCE01045240;XM_005377421;XM_013510594;XM_013510595;XM_013510596;XM_013510597;XM_013510598 XP_005377478;XP_013366048;XP_013366049;XP_013366050;XP_013366051;XP_013366052 MODEL 8830520 protein-coding LOC102004605 histone H2A type 1 NW_004955483 970650 971254 - 102004605 AGCD01057638;GBDF01049962;XM_013503794 XP_013359248 MODEL 8872552 protein-coding LOC102027740 olfactory receptor 52D1-like NW_004955414 20710842 20717930 - 102027740 AGCD01015387;XM_013511723 XP_013367177 MODEL 8912261 protein-coding Tsga10ip testis specific 10 interacting protein NW_004955422 19372072 19389144 - 102022710 AGCD01023002;AGCD01023003;AGCD01023004;AGCD01023005;GBDF01008093;XM_005384439 XP_005384496 MODEL 8919885 protein-coding Phf5a PHD finger protein 5A ENCODES a protein that exhibits RNA binding (ortholog); zinc ion binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); positive regulation of DNA-templated transcription (ortholog); stem cell differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN nuclear matrix (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955413 27018730 27026937 - 102019682 AGCD01014491;GBDI01060064;XM_005379353 XP_005379410 MODEL 10163402 ncrna LOC106146739 uncharacterized LOC106146739 NW_004955494 6151624 6160914 + 106146739 AGCD01061530;GBDF01050631;XR_001231297 MODEL 9014295 protein-coding LOC102009370 protein FAM69A NW_004955469 9920282 9922602 + 102009370 AGCD01052521;GBCB01040907;GBDJ01083890;XM_005400517 XP_005400574 MODEL 9044391 pseudo LOC102010159 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4-like NW_004955417 3869752 3882123 - 102010159 AGCD01017930;AGCD01017931 MODEL 39133638 snrna U4 U4 spliceosomal RNA 10350248 ncrna LOC106148111 uncharacterized LOC106148111 NW_004955416 11816782 11820769 + 106148111 AGCD01017192;GBBH01048264;XR_001233285 MODEL 8906697 protein-coding LOC102023925 spermatogenesis-associated protein 31E1-like NW_004955494 118777 122555 - 102023925 AGCD01061355;XM_013504912 XP_013360366 MODEL 9024314 pseudo LOC102020733 upstream-binding factor 1-like protein 1 NW_004955448 7802383 7803407 - 102020733 AGCD01041425 MODEL 10212715 ncrna LOC106147020 uncharacterized LOC106147020 NW_004955511 4950780 4965081 - 106147020 AGCD01066539;AGCD01066540;GBCQ01166532;XR_001231719 MODEL 9005830 protein-coding LOC102024236 uncharacterized LOC102024236 NW_004955486 4140771 4144719 - 102024236 AGCD01059055;GBDI01207893;GBDK01042435;XM_013504281 XP_013359735 MODEL 8933829 ncrna LOC102029475 uncharacterized LOC102029475 NW_004955454 12143046 12145224 + 102029475 AGCD01045404;GBDF01118913;XR_262788 MODEL 8765725 protein-coding LOC102012123 uncharacterized LOC102012123 NW_004955436 1773036 1779567 - 102012123 AGCD01033588;AGCD01033589;GBDF01021603;XM_013516581 XP_013372035 MODEL 8909393 protein-coding Tfdp1 transcription factor Dp-1 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN anoikis (ortholog); epidermis development (ortholog); negative regulation of fat cell proliferation (ortholog); ASSOCIATED WITH mismatch repair cancer syndrome (ortholog); systemic juvenile rheumatoid arthritis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); Rb-E2F complex (ortholog) NW_004955404 371905 408441 - 102030377 AGCD01003199;GBDJ01355231;XM_005373938;XM_013515501 XP_005373995;XP_013370955 MODEL 8959113 ncrna LOC102003582 uncharacterized LOC102003582 NW_004955526 1543834 1552568 + 102003582 AGCD01069274;GBDF01182742;XR_264657 MODEL 8817050 protein-coding Sin3b SIN3 transcription regulator family member B ENCODES a protein that exhibits chromatin binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN cardiac muscle tissue development (ortholog); negative regulation of DNA-templated transcription (ortholog); skeletal muscle tissue development (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN autosome (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955524 1049828 1067637 - 102029111 AGCD01068733;AGCD01068734;GBBH01118323;XM_013507309 XP_013362763 MODEL 10364981 ncrna LOC106146472 uncharacterized LOC106146472 NW_004955481 5984381 5992137 - 106146472 AGCD01057006;GBDF01211302;XR_001230919 MODEL 8982705 protein-coding Etf1 eukaryotic translation termination factor 1 ENCODES a protein that exhibits peptidyl-tRNA hydrolase activity (ortholog); sequence-specific mRNA binding (ortholog); translation release factor activity (ortholog); INVOLVED IN protein methylation (ortholog); regulation of translational termination (ortholog); translational termination (ortholog); PARTICIPATES IN translation termination pathway; FOUND IN cytoplasm (ortholog); cytosolic ribosome (ortholog); nucleus (ortholog) NW_004955418 1943233 1974241 + 102025793 AGCD01018735;GBDF01005274;XM_005382097;XM_005382099;XM_013512964 XP_005382154;XP_005382156;XP_013368418 MODEL 8805134 protein-coding LOC102015519 olfactory receptor 2T8-like NW_004955418 30549727 30550668 + 102015519 AGCD01019528;XM_005382378 XP_005382435 MODEL 10258658 protein-coding LOC106150130 N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase NW_004955465 3740444 3791391 - 106150130 AGCD01050389;AGCD01050390;AGCD01050391;AGCD01050392;GBDI01010900;XM_013521854;XM_013521855 XP_013377308;XP_013377309 MODEL 9013854 protein-coding Pkd1l2 polycystin-1-like protein 2 ASSOCIATED WITH long QT syndrome (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); otosclerosis 4 (ortholog) NW_004955522 3877806 3963197 - 102004194 AGCD01068403;AGCD01068404;AGCD01068405;AGCD01068406;AGCD01068407;AGCD01068408;AGCD01068409;AGCD01068410;GBDI01369777;XM_005409357;XM_013507110 XP_005409414;XP_013362564 MODEL 8907204 pseudo LOC102018581 14-3-3 protein zeta/delta pseudogene NW_004955466 5972796 5973429 + 102018581 AGCD01050899;XM_005399250 MODEL 8823122 protein-coding Tnfrsf9 TNF receptor superfamily member 9 ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN regulation of cell population proliferation (ortholog); ASSOCIATED WITH celiac disease (ortholog); Colonic Neoplasms (ortholog); dilated cardiomyopathy (ortholog); FOUND IN external side of plasma membrane (ortholog); plasma membrane (ortholog) NW_004955486 4986245 5009437 + 102004168 AGCD01059074;GBDF01144267;XM_005404066;XM_013504319;XM_013504320;XM_013504321 XP_005404123;XP_013359773;XP_013359774;XP_013359775 MODEL 8742730 pseudo LOC102003583 zinc transporter ZIP2 pseudogene NW_004955436 12539750 12540990 + 102003583 AGCD01033843 MODEL 8742095 ncrna LOC102009009 uncharacterized LOC102009009 NW_004955452 14645767 14677079 + 102009009 AGCD01044474;AGCD01044475;AGCD01044476;GBDF01115467;XR_001236027 MODEL 8792186 protein-coding Spic Spi-C transcription factor ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN blastocyst development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog) NW_004955405 36946481 36956472 + 102026598 AGCD01005431;GBDI01243516;XM_005374550 XP_005374607 MODEL 10090451 ncrna LOC106146351 uncharacterized LOC106146351 NW_004955475 4503319 4509383 + 106146351 AGCD01054880;XR_001230749 MODEL 8938040 ncrna LOC102006020 uncharacterized LOC102006020 NW_004955414 22872844 22875573 - 102006020 AGCD01015483;GBCQ01017796;XR_260188 MODEL 8781096 pseudo LOC102025670 olfactory receptor 8G1-like NW_004955412 24950519 24954617 + 102025670 AGCD01013131;AGCD01013132 MODEL 8855665 protein-coding LOC102019724 olfactory receptor 1052-like NW_004955511 1381697 1382632 - 102019724 AGCD01066366;XM_005408171 XP_005408228 MODEL 8924496 protein-coding LOC102007472 hemoglobin subunit zeta NW_004955442 17015120 17016686 - 102007472 AGCD01037931;XM_005391674 XP_005391731 MODEL 8710924 protein-coding Schip1 schwannomin interacting protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN estrogen metabolic process (ortholog); face morphogenesis (ortholog); female gonad development (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955448 10364261 10502799 + 102029245 AGCD01041490;AGCD01041491;AGCD01041492;AGCD01041493;GBDK01070603;XM_005393115;XM_005393116;XM_005393117 XP_005393172;XP_005393173;XP_005393174 MODEL 8770945 pseudo LOC102003261 40S ribosomal protein S20 pseudogene NW_004955501 30940 31292 + 102003261 AGCD01063987 MODEL 8713106 pseudo LOC102030187 tyrosine-protein kinase Fer-like NW_004955473 11140402 11146666 - 102030187 AGCD01054130 MODEL 8817191 pseudo LOC102006386 muskelin-like NW_004955526 3588762 3591143 - 102006386 AGCD01069337 MODEL 8830860 pseudo LOC102021519 purine nucleoside phosphorylase pseudogene NW_004955406 14154246 14154836 - 102021519 AGCD01005958 MODEL 8832709 protein-coding LOC102026739 taste receptor type 2 member 14-like NW_004955413 8284910 8285836 + 102026739 AGCD01013859;XM_005379636 XP_005379693 MODEL 8862508 ncrna LOC102018180 uncharacterized LOC102018180 NW_004955416 11264103 11270327 - 102018180 AGCD01017181;GBDF01051838;XR_001233298 MODEL 8732617 pseudo LOC102025344 osteoclast-stimulating factor 1 pseudogene NW_004955414 9310670 9311289 - 102025344 AGCD01015017 MODEL 10387346 ncrna LOC106146473 uncharacterized LOC106146473 NW_004955481 7229455 7232602 + 106146473 AGCD01057057;XR_001230920 MODEL 8878747 protein-coding Necab1 N-terminal EF-hand calcium binding protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955417 7573861 7737920 + 102012647 AGCD01018008;AGCD01018009;AGCD01018010;AGCD01018011;AGCD01018012;AGCD01018013;AGCD01018014;GBDJ01360857;XM_005381766 XP_005381823 MODEL 8713287 protein-coding Krt18 keratin 18 ENCODES a protein that exhibits scaffold protein binding (ortholog); INVOLVED IN cholangiocyte apoptotic process (ortholog); extrinsic apoptotic signaling pathway (ortholog); Golgi to plasma membrane protein transport (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); Breast Neoplasms (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cell periphery (ortholog); centriolar satellite (ortholog); cytoplasm (ortholog) NW_004955458 227017 230752 + 102008919 AGCD01047113;GBCE01028708;XM_005397132;XM_005397133 XP_005397189;XP_005397190 MODEL 153211032 snorna SNORD53B small nucleolar RNA, C/D box 53B 8773422 protein-coding Igfbp3 insulin like growth factor binding protein 3 ENCODES a protein that exhibits fibronectin binding (ortholog); insulin-like growth factor binding (ortholog); insulin-like growth factor I binding (ortholog); INVOLVED IN cellular response to estradiol stimulus (ortholog); cellular response to Thyroglobulin triiodothyronine (ortholog); female pregnancy (ortholog); PARTICIPATES IN insulin-like growth factor signaling pathway; ASSOCIATED WITH acoustic neuroma (ortholog); Acute-Phase Reaction (ortholog); Alzheimer's disease (ortholog); FOUND IN extracellular region (ortholog); heterochromatin (ortholog); insulin-like growth factor binary complex (ortholog) NW_004955456 6795560 6802147 + 102007408 AGCD01046378;GBCE01001939;GBDF01052670;XM_013520639 XP_013376093 MODEL 10157392 pseudo LOC106148112 heterogeneous nuclear ribonucleoprotein A3-like NW_004955416 9031102 9031750 - 106148112 AGCD01017072 MODEL 8955768 protein-coding Bmx BMX non-receptor tyrosine kinase ENCODES a protein that exhibits non-membrane spanning protein tyrosine kinase activity (ortholog); INVOLVED IN signal transduction (ortholog); FOUND IN plasma membrane (ortholog); ruffle membrane (ortholog) NW_004955519 2638081 2689601 - 102015230 AGCD01067937;GBDI01107256;XM_005409162;XM_005409163;XM_013507003;XM_013507004 XP_005409219;XP_005409220;XP_013362457;XP_013362458 MODEL 8727901 protein-coding LOC102023926 zinc finger protein 426-like NW_004955495 1172958 1195064 + 102023926 AGCD01061675;GBDF01047470;XM_013505073 XP_013360527 MODEL 10146769 ncrna LOC106149310 uncharacterized LOC106149310 NW_004955442 7414126 7423665 + 106149310 AGCD01037624;GBCE01113848;XR_001235397;XR_001235398 MODEL 10063024 protein-coding LOC106146593 uncharacterized LOC106146593 NW_004955486 6025613 6027464 + 106146593 AGCD01059103;GBDJ01262633;XM_013504144 XP_013359598 MODEL 8769496 pseudo LOC102029476 CUGBP Elav-like family member 1 pseudogene NW_004955454 7933132 7934717 - 102029476 AGCD01045312 MODEL 9019370 protein-coding Polr2f RNA polymerase II, I and III subunit F INVOLVED IN termination of RNA polymerase III transcription (ortholog); transcription by RNA polymerase II (ortholog); transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription pathway; RNA polymerase III transcription pathway; ASSOCIATED WITH intellectual disability (ortholog); FOUND IN fibrillar center (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955413 24300340 24309798 + 102013404 AGCD01014360;GBDF01005505;XM_005379236 XP_005379293 MODEL 8791491 ncrna LOC102027741 uncharacterized LOC102027741 NW_004955475 3253946 3257590 - 102027741 AGCD01054833;GBCB01044661;XR_263607 MODEL 8881807 pseudo LOC102004607 phosphatidylserine synthase 1 pseudogene NW_004955419 18515166 18516459 - 102004607 AGCD01020175 MODEL 39132950 misc_rna Y_RNA Y RNA 8980969 protein-coding Slc35d1 solute carrier family 35 member D1 ENCODES a protein that exhibits antiporter activity (ortholog); pyrimidine nucleotide-sugar transmembrane transporter activity (ortholog); INVOLVED IN chondroitin sulfate proteoglycan biosynthetic process (ortholog); embryonic skeletal system development (ortholog); pyrimidine nucleotide-sugar transmembrane transport (ortholog); ASSOCIATED WITH connective tissue disease (ortholog); Craniofacial Abnormalities (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955423 23945729 23969929 + 102016614 AGCD01024026;AGCD01024027;GBBH01050955;GBCE01009175;XM_005385278;XM_013514495 XP_005385335;XP_013369949 MODEL 8961424 protein-coding Etfa electron transfer flavoprotein subunit alpha ENCODES a protein that exhibits electron transfer activity (ortholog); flavin adenine dinucleotide binding (ortholog); INVOLVED IN amino acid catabolic process (ortholog); fatty acid beta-oxidation using acyl-CoA dehydrogenase (ortholog); respiratory electron transport chain (ortholog); PARTICIPATES IN fatty acid beta degradation pathway; ASSOCIATED WITH genetic disease (ortholog); glutaric acidemia type 3 (ortholog); Glutaric Aciduria 2 (ortholog); FOUND IN electron transfer flavoprotein complex (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955450 1392526 1451591 - 102017080 AGCD01042364;GBDF01121130;XM_005393471 XP_005393528 MODEL 8913683 protein-coding Phf6 PHD finger protein 6 ENCODES a protein that exhibits enzyme binding (ortholog); histone binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Borjeson-Forssman-Lehmann syndrome (ortholog); colorectal carcinoma (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955473 527005 586589 - 102024217 AGCD01053844;AGCD01053845;AGCD01053846;AGCD01053847;GBDK01432847;XM_005401199;XM_013523061 XP_005401256;XP_013378515 MODEL 10210971 protein-coding LOC106146740 spermatogenesis-associated protein 31E1-like NW_004955494 193526 195354 - 106146740 AGCD01061370;XM_013504927;XM_013504928;XR_001231298;XR_001231299 XP_013360381;XP_013360382 MODEL 8905424 pseudo LOC102027089 39S ribosomal protein L1, mitochondrial pseudogene NW_004955504 6974131 6975006 + 102027089 AGCD01064933 MODEL 8958452 ncrna LOC102010160 uncharacterized LOC102010160 NW_004955481 5183643 5195662 + 102010160 AGCD01056965;GBDF01117312;XR_263780;XR_263781 MODEL 8844985 pseudo LOC102012564 zinc finger CCHC domain-containing protein 9-like NW_004955506 4557255 4572734 + 102012564 AGCD01065339;AGCD01065340 MODEL 10392024 ncrna LOC106146474 uncharacterized LOC106146474 NW_004955481 7227856 7232633 - 106146474 AGCD01057057;GBCQ01092246;XR_001230921 MODEL 9067232 pseudo LOC102028418 ras GTPase-activating protein-binding protein 1 pseudogene NW_004955483 1922525 1923752 - 102028418 AGCD01057663 MODEL 9014845 pseudo LOC102020737 transmembrane protein 59-like NW_004955450 7714611 7725226 + 102020737 AGCD01042545;AGCD01042546 MODEL 8961466 protein-coding LOC102018584 C-type lectin domain family 12 member A-like NW_004955413 5408723 5416010 - 102018584 AGCD01013670;GBDK01238521;XM_005378879;XM_005378881;XR_001232931 XP_005378936;XP_005378938 MODEL 8830376 protein-coding Tnfsf10 TNF superfamily member 10 ENCODES a protein that exhibits cytokine activity (ortholog); identical protein binding (ortholog); TRAIL binding (ortholog); INVOLVED IN male gonad development (ortholog); positive regulation of apoptotic process (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN Trail mediated signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); arteriosclerosis (ortholog); Brain Injuries (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog) NW_004955420 2550392 2566448 - 102029748 AGCD01020602;GBBH01065699;XM_005383009 XP_005383066 MODEL 10127639 protein-coding LOC106147021 uncharacterized LOC106147021 NW_004955511 4563294 4570763 - 106147021 AGCD01066515;GBBH01102995;XM_013506520;XM_013506521;XM_013506522;XM_013506523 XP_013361974;XP_013361975;XP_013361976;XP_013361977 MODEL 8995948 protein-coding Ldhb lactate dehydrogenase B ENCODES a protein that exhibits identical protein binding (ortholog); kinase binding (ortholog); L-lactate dehydrogenase (NAD+) activity (ortholog); INVOLVED IN lactate metabolic process (ortholog); NAD+ metabolic process (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Breast Neoplasms (ortholog); ductal carcinoma in situ (ortholog); FOUND IN cytosol (ortholog); membrane raft (ortholog); mitochondrial inner membrane (ortholog) NW_004955413 17264337 17283530 - 102018706 AGCD01014141;GBCB01007481;GBDJ01002173;XM_005379063 XP_005379120 MODEL 8859400 protein-coding LOC102012132 keratin, type II cytoskeletal 72 NW_004955547 2991156 3005189 - 102012132 AGCD01072303;XM_005411950 XP_005412007 MODEL 9051659 protein-coding LOC102025672 olfactory receptor 10K2 NW_004955468 10283503 10284623 - 102025672 AGCD01052075;GBBH01129767;XM_005400150 XP_005400207 MODEL 9041547 protein-coding LOC102030191 protein Wnt-3b NW_004955478 10735751 10742234 - 102030191 AGCD01056146;GBDF01089201;GBDI01190276;XM_013503128 XP_013358582 MODEL 9028747 protein-coding LOC102007473 N-formyl peptide receptor 2-like NW_004955558 724982 760617 - 102007473 AGCD01073387;AGCD01073388;AGCD01073389;GBDK01358972;XM_005412669;XM_013508868;XM_013508869 XP_005412726;XP_013364322;XP_013364323 MODEL 8928663 protein-coding Sinhcaf SIN3-HDAC complex associated factor INVOLVED IN negative regulation of cell differentiation (ortholog); negative regulation of cell migration (ortholog); positive regulation of cell population proliferation (ortholog); ASSOCIATED WITH pancreatic cancer (ortholog); FOUND IN Sin3-type complex (ortholog) NW_004955505 4344465 4377463 + 102012560 AGCD01065104;AGCD01065105;AGCD01065106;AGCD01065107;GBBH01186638;XM_005407132 XP_005407189 MODEL 8797280 protein-coding Pam peptidylglycine alpha-amidating monooxygenase ENCODES a protein that exhibits calcium ion binding (ortholog); chromatin binding (ortholog); copper ion binding (ortholog); INVOLVED IN fatty acid primary amide biosynthetic process (ortholog); heart development (ortholog); limb development (ortholog); PARTICIPATES IN melanocortin system pathway; ASSOCIATED WITH anxiety disorder (ortholog); Brain Hypoxia (ortholog); Experimental Arthritis (ortholog); FOUND IN cell surface (ortholog); chromatin (ortholog); condensed chromosome (ortholog) NW_004955418 10953044 11107668 - 102030078 AGCD01018992;AGCD01018993;AGCD01018994;AY533221;GBCB01022629;GBDF01085228;XM_013512971 XP_013368425 MODEL 8799544 protein-coding Srpx sushi repeat containing protein X-linked INVOLVED IN autophagy (ortholog); negative regulation of cell proliferation involved in contact inhibition (ortholog); phagolysosome assembly (ortholog); ASSOCIATED WITH Dwarfism (ortholog); hepatocellular carcinoma (ortholog); FOUND IN autophagosome (ortholog); endoplasmic reticulum (ortholog) NW_004955601 286092 364235 - 102027254 AGCD01076751;AGCD01076752;AGCD01076753;AGCD01076754;GBCE01028505;XM_005414816;XM_005414817 XP_005414873;XP_005414874 MODEL 8700369 protein-coding Tsga13 testis specific 13 NW_004955410 36964398 36982042 + 102009259 AGCD01011441;AGCD01011442;GBDF01010268;XM_005377551;XM_005377552;XM_005377553;XM_013510641 XP_005377608;XP_005377609;XP_005377610;XP_013366095 MODEL 8952705 ncrna LOC102009372 uncharacterized LOC102009372 NW_004955470 3387443 3399619 - 102009372 AGCD01052700;GBDF01014209;XR_263462 MODEL 39133639 snrna U4 U4 spliceosomal RNA 8753865 pseudo LOC102003588 60S ribosomal protein L37 pseudogene NW_004955440 16839141 16839617 + 102003588 AGCD01036533 MODEL 8777115 protein-coding Pkd2 polycystin 2, transient receptor potential cation channel ENCODES a protein that exhibits actinin binding (ortholog); alpha-actinin binding (ortholog); ATPase binding (ortholog); INVOLVED IN aorta development (ortholog); branching involved in ureteric bud morphogenesis (ortholog); calcium ion transmembrane transport (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); autosomal dominant polycystic kidney disease (ortholog); autosomal recessive polycystic kidney disease (ortholog); FOUND IN basal cortex (ortholog); basal plasma membrane (ortholog); basolateral plasma membrane (ortholog) NW_004955474 1831221 1868170 - 102012637 AGCD01054268;GBBH01000984;GBCE01095892;XM_013502757 XP_013358211 MODEL 9035732 ncrna LOC102024238 uncharacterized LOC102024238 NW_004955420 25457014 25461027 - 102024238 AGCD01021358;AGCD01021359;GBDF01226054;XR_260755 MODEL 8734447 protein-coding LOC102019732 transmembrane protein 217 NW_004955437 5919268 5920806 + 102019732 AGCD01034405;GBDF01011016;XM_013517044 XP_013372498 MODEL 8745539 protein-coding Krt2 keratin 2 ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); structural constituent of skin epidermis (ortholog); INVOLVED IN cornification (ortholog); epidermis development (ortholog); intermediate filament organization (ortholog); ASSOCIATED WITH bullous congenital ichthyosiform erythroderma (ortholog); contact dermatitis (ortholog); genetic disease (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); keratin filament (ortholog) NW_004955547 3027767 3035244 - 102013452 AGCD01072303;GBCC01000255;XM_005411955 XP_005412012 MODEL 8878040 protein-coding Tfdp2 transcription factor Dp-2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); protein domain specific binding (ortholog); INVOLVED IN heart development (ortholog); negative regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH COVID-19 (ortholog); malignant mesothelioma (ortholog); FOUND IN nucleoplasm (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955508 3722412 3844340 + 102015031 AGCD01065832;AGCD01065833;AGCD01065834;AGCD01065835;AGCD01065836;AGCD01065837;AGCD01065838;AGCD01065839;GBBH01207991;XM_005407749;XM_005407752;XM_013506253;XM_013506254;XM_013506255;XM_013506256;XM_013506257 XP_005407806;XP_005407809;XP_013361707;XP_013361708;XP_013361709;XP_013361710;XP_013361711 MODEL 8774134 protein-coding LOC102020743 ubiquitin carboxyl-terminal hydrolase 17 NW_004955403 53540579 53541734 - 102020743 AGCD01003060;XM_013514944 XP_013370398 MODEL 8995178 pseudo LOC102023927 nuclear pore complex protein Nup153 pseudogene NW_004955422 23256961 23260039 - 102023927 AGCD01023186 MODEL 8834627 ncrna LOC102012565 uncharacterized LOC102012565 NW_004955507 4294100 4350414 + 102012565 AGCD01065647;AGCD01065648;GBDF01133790;XR_001231617;XR_264382 MODEL 9030355 ncrna LOC102006393 uncharacterized LOC102006393 NW_004955439 11260396 11262507 + 102006393 AGCD01035896;GBBH01057642;XR_261980 MODEL 8708515 protein-coding LOC102015521 histone H3.1 NW_004955483 786482 786943 + 102015521 AGCD01057630;XM_005403292 XP_005403349 MODEL 10372010 protein-coding LOC106147022 translation initiation factor IF-2-like NW_004955512 3889328 3891040 - 106147022 AGCD01066713;GBDK01225034;XM_013506524 XP_013361978 MODEL 9030272 ncrna LOC102029478 uncharacterized LOC102029478 NW_004955456 3653807 3662695 + 102029478 AGCD01046278;GBDF01040432;XR_262880 MODEL 8793967 ncrna LOC102009015 uncharacterized LOC102009015 NW_004955407 17180370 17193372 + 102009015 AGCD01007241;XR_259563 MODEL 8700916 ncrna LOC102004612 uncharacterized LOC102004612 NW_004955422 13845624 13851380 - 102004612 AGCD01022839;GBCE01145779;XR_001233893;XR_260876 MODEL 8745813 protein-coding LOC102025345 uncharacterized LOC102025345 NW_004955470 4335967 4370486 + 102025345 AGCD01052729;AGCD01052730;GBCB01120642;XM_005400690;XM_005400691;XM_005400692;XM_005400693 XP_005400747;XP_005400748;XP_005400749;XP_005400750 MODEL 39132952 misc_rna Y_RNA Y RNA 9050885 protein-coding Spice1 spindle and centriole associated protein 1 INVOLVED IN metaphase chromosome alignment (ortholog); mitotic spindle assembly (ortholog); regulation of centriole replication (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955427 13584841 13626656 - 102003893 AGCD01027253;GBDK01324651;XM_005386399;XM_013515113;XM_013515114 XP_005386456;XP_013370567;XP_013370568 MODEL 8868620 protein-coding LOC102007476 putative methyl-CpG-binding domain protein 3-like 5 NW_004955563 661965 676066 + 102007476 AGCD01074073;AGCD01074074;AGCD01074075;GBDF01166412;XM_005413108 XP_005413165 MODEL 10354866 ncrna LOC106146352 uncharacterized LOC106146352 NW_004955475 11720560 11884118 + 106146352 AGCD01055166;AGCD01055167;AGCD01055168;AGCD01055169;AGCD01055170;AGCD01055171;AGCD01055172;AGCD01055173;AGCD01055174;AGCD01055175;GBDF01149493;XR_001230753 MODEL 10319754 ncrna LOC106146741 uncharacterized LOC106146741 NW_004955494 7513560 7530927 + 106146741 AGCD01061553;GBDK01098115;XR_001231301;XR_001231302;XR_001231303 MODEL 405822144 snorna SNORD56 small nucleolar RNA, C/D box 56 8781413 protein-coding Etfb electron transfer flavoprotein subunit beta ENCODES a protein that exhibits electron transfer activity (ortholog); INVOLVED IN amino acid catabolic process (ortholog); fatty acid beta-oxidation using acyl-CoA dehydrogenase (ortholog); respiratory electron transport chain (ortholog); PARTICIPATES IN fatty acid beta degradation pathway; ASSOCIATED WITH chronic kidney disease (ortholog); genetic disease (ortholog); multiple acyl-CoA dehydrogenase deficiency (ortholog); FOUND IN electron transfer flavoprotein complex (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955558 1032743 1046300 + 102013655 AGCD01073411;AGCD01073412;GBCQ01010793;XM_005412686 XP_005412743 MODEL 8737569 pseudo LOC102010171 40S ribosomal protein SA pseudogene NW_004955421 22931886 22933055 - 102010171 AGCD01022164 MODEL 10207239 pseudo LOC106148113 transmembrane 9 superfamily member 3 pseudogene NW_004955416 11954248 11956358 - 106148113 AGCD01017196 MODEL 8701106 protein-coding Scimp SLP adaptor and CSK interacting membrane protein ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN cellular response to molecule of fungal origin (ortholog); positive regulation of cytokine production involved in immune response (ortholog); positive regulation of dendritic cell cytokine production (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN filopodium (ortholog); immunological synapse (ortholog); leading edge membrane (ortholog) NW_004955467 10547706 10578355 - 102012180 AGCD01051575;AGCD01051576;AGCD01051577;GBDI01384955;XM_013522267;XM_013522268 XP_013377721;XP_013377722 MODEL 10215756 ncrna LOC106150131 uncharacterized LOC106150131 NW_004955465 13887825 13890392 + 106150131 AGCD01050633;GBDF01144915;XR_001236755 MODEL 10193123 ncrna LOC106146475 uncharacterized LOC106146475 NW_004955406 16123332 16132859 + 106146475 AGCD01005994;XR_001230922 MODEL 8893271 pseudo LOC102021527 olfactory receptor 6C65-like NW_004955458 2783468 2787627 + 102021527 AGCD01047243 MODEL 10255381 protein-coding LOC106146594 uncharacterized LOC106146594 NW_004955486 9025213 9035450 + 106146594 AGCD01059159;AGCD01059160;GBDK01096823;XM_013504146 XP_013359600 MODEL 8835888 protein-coding LOC102027743 uncharacterized LOC102027743 NW_004955476 10428575 10438391 + 102027743 AGCD01055421;GBDF01222931;XM_005401781;XR_263639 XP_005401838 MODEL 8925462 protein-coding Polr2g RNA polymerase II subunit G INVOLVED IN transcription by RNA polymerase II (ortholog); transcription elongation by RNA polymerase II (ortholog); transcription initiation at RNA polymerase II promoter (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase II, core complex (ortholog) NW_004955599 469233 471761 - 102008278 AGCD01076651;GBDI01120679;XM_005414767 XP_005414824 MODEL 9031716 pseudo LOC102006021 calcyclin-binding protein pseudogene NW_004955470 12066013 12067427 + 102006021 AGCD01052919 MODEL 8999961 protein-coding LOC102025674 protein FAM228B NW_004955469 6306802 6357458 + 102025674 AGCD01052380;AGCD01052381;AGCD01052382;AGCD01052383;AGCD01052384;AGCD01052385;AGCD01052386;GBBH01096394;XM_005400377;XM_005400378;XM_005400379;XM_005400380;XM_005400381;XM_013522613;XM_013522614;XM_013522615 XP_005400434;XP_005400435;XP_005400436;XP_005400437;XP_005400438;XP_013378067;XP_013378068;XP_013378069 MODEL 10173052 ncrna LOC106147023 uncharacterized LOC106147023 NW_004955512 3859179 3881929 - 106147023 AGCD01066712;AGCD01066713;XR_001231720 MODEL 8941952 protein-coding Necab2 N-terminal EF-hand calcium binding protein 2 ENCODES a protein that exhibits A2A adenosine receptor binding (ortholog); identical protein binding (ortholog); type 5 metabotropic glutamate receptor binding (ortholog); INVOLVED IN negative regulation of G protein-coupled receptor internalization (ortholog); positive regulation of adenosine receptor signaling pathway (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog); postsynapse (ortholog) NW_004955564 257781 279937 - 102026362 AGCD01074193;AGCD01074194;GBCE01037934;GBDK01095160;XM_013509207;XR_001232384 XP_013364661 MODEL 39131541 protein-coding IGFBP4 insulin like growth factor binding protein 4 8746266 protein-coding Slc35d2 solute carrier family 35 member D2 ENCODES a protein that exhibits nucleotide-sugar transmembrane transporter activity (ortholog); INVOLVED IN heparan sulfate proteoglycan biosynthetic process (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955422 23544376 23582585 + 102011129 AGCD01023195;AGCD01023196;AGCD01023197;GBBH01107187;GBCB01051625;XM_013514308 XP_013369762 MODEL 8985996 pseudo LOC102003264 PHD finger protein 7-like NW_004955429 11735749 11737540 - 102003264 AGCD01028693 MODEL 8844466 ncrna LOC102028424 uncharacterized LOC102028424 NW_004955421 3367557 3421029 - 102028424 AGCD01021653;AGCD01021654;GBDJ01395461;XR_260785 MODEL 8823749 protein-coding Bnc1 basonuclin zinc finger protein 1 ENCODES a protein that exhibits DNA-binding transcription activator activity (ortholog); rDNA binding (ortholog); INVOLVED IN chromosome organization (ortholog); positive regulation of epithelial cell proliferation (ortholog); positive regulation of oocyte maturation (ortholog); ASSOCIATED WITH 46 XX gonadal dysgenesis (ortholog); primary ovarian insufficiency (ortholog); primary ovarian insufficiency 16 (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955416 13428760 13440837 + 102003125 AGCD01017223;GBBH01128516;XM_005381464 XP_005381521 MODEL 10177558 ncrna LOC106146353 uncharacterized LOC106146353 NW_004955475 11888755 11958163 + 106146353 AGCD01055175;AGCD01055176;GBDF01149496;XR_001230754 MODEL 10067508 protein-coding LOC106149311 uncharacterized LOC106149311 NW_004955442 14383218 14387882 + 106149311 AGCD01037815;GBDI01215533;XM_013517863;XM_013517864;XR_001235399;XR_001235400;XR_001235401 XP_013373317;XP_013373318 MODEL 8864170 ncrna LOC102018592 uncharacterized LOC102018592 NW_004955414 33004937 33019763 + 102018592 AGCD01015794;AGCD01015795;GBCQ01142945;XR_001233135;XR_001233136 MODEL 9049353 protein-coding Pkd2l1 polycystin 2 like 1, transient receptor potential cation channel ENCODES a protein that exhibits alpha-actinin binding (ortholog); calcium channel activity (ortholog); calcium ion binding (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); cellular response to pH (ortholog); detection of chemical stimulus involved in sensory perception of sour taste (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN calcium channel complex (ortholog); cation channel complex (ortholog); cell surface (ortholog) NW_004955507 6145981 6167152 - 102022313 AGCD01065697;GBDI01264560;XM_005407691;XM_005407692;XM_005407693;XM_005407694;XM_005407695;XM_005407696 XP_005407748;XP_005407749;XP_005407750;XP_005407751;XP_005407752;XP_005407753 MODEL 8794251 ncrna LOC102019733 uncharacterized LOC102019733 NW_004955437 13881006 13883816 + 102019733 AGCD01034665;GBDF01112877;XR_261880 MODEL 8850916 ncrna LOC102018185 uncharacterized LOC102018185 NW_004955481 6299681 6301761 - 102018185 AGCD01057023;GBCE01032788;XR_263784 MODEL 8795867 pseudo LOC102020747 IST1 homolog pseudogene NW_004955404 18325439 18332599 + 102020747 AGCD01003612 MODEL 8844144 protein-coding Krt222 keratin 222 NW_004955451 15156315 15164607 - 102016874 AGCD01043598;GBDF01016890;XM_005394366;XM_013519399 XP_005394423;XP_013374853 MODEL 9023768 protein-coding Ldhd lactate dehydrogenase D ENCODES a protein that exhibits (2R)-2-hydroxycarboxylate dehydrogenase activity (ortholog); D-lactate dehydrogenase (FAD) activity (ortholog); lactate dehydrogenase activity (ortholog); INVOLVED IN lactate catabolic process (ortholog); PARTICIPATES IN glyoxalase metabolic pathway; Leigh disease pathway; primary hyperoxaluria type 2 pathway; ASSOCIATED WITH Lactic Aciduria due to D-Lactic Acid (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955484 2461545 2466702 + 102023475 AGCD01058116;GBCE01153230;XM_005403452 XP_005403509 MODEL 10379623 protein-coding LOC106146476 uncharacterized LOC106146476 NW_004955481 1178126 1178914 - 106146476 AGCD01056826;GBBH01065733;GBDJ01089320;XM_013503375 XP_013358829 MODEL 8834227 ncrna LOC102030195 uncharacterized LOC102030195 NW_004955482 1239461 1240592 - 102030195 AGCD01057208;GBDF01076060;XR_263816 MODEL 8825299 protein-coding Sipa1 signal-induced proliferation-associated 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN cellular response to water deprivation (ortholog); regulation of cell cycle (ortholog); PARTICIPATES IN platelet-derived growth factor signaling pathway; vasopressin signaling pathway; vasopressin signaling pathway via receptor type 2; ASSOCIATED WITH chronic myeloid leukemia (ortholog); esophageal atresia (ortholog); melanoma (ortholog); FOUND IN nucleus (ortholog); protein-containing complex (ortholog) NW_004955422 19615440 19627195 - 102003459 AGCD01023024;GBDJ01018460;XM_005384470;XM_013513855;XM_013513856;XM_013513857;XM_013513858 XP_005384527;XP_013369309;XP_013369310;XP_013369311;XP_013369312 MODEL 8852622 ncrna LOC102009373 uncharacterized LOC102009373 NW_004955471 267562 303293 + 102009373 AGCD01052952;AGCD01052953;AGCD01052954;GBDK01102526;XR_001237060;XR_263510 MODEL 8929756 pseudo LOC102027091 cell growth-regulating nucleolar protein pseudogene NW_004955506 4924244 4925672 - 102027091 AGCD01065350 MODEL 8739011 protein-coding Phf7 PHD finger protein 7 ENCODES a protein that exhibits histone H3K14 ubiquitin ligase activity (ortholog); INVOLVED IN negative regulation of osteoclast proliferation (ortholog); ASSOCIATED WITH sensorineural hearing loss (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955430 2400866 2413188 + 102016833 AGCD01029165;GBDF01008480;XM_005415258 XP_005415315 MODEL 8938501 protein-coding Tshb thyroid stimulating hormone subunit beta INVOLVED IN response to calcium ion (ortholog); response to estrogen (ortholog); response to vitamin A (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); Coma (ortholog); congenital hypothyroidism (ortholog); FOUND IN cytoplasm (ortholog) NW_004955435 18316585 18339935 + 102023390 AGCD01033400;AGCD01033401;AGCD01033402;AGCD01033403;GBDF01010175;XM_005389018;XM_005389019;XM_013516550 XP_005389075;XP_005389076;XP_013372004 MODEL 9048452 ncrna LOC102004619 uncharacterized LOC102004619 NW_004955497 162494 196973 - 102004619 AGCD01062402;GBCC01014237;XR_264187 MODEL 8895042 protein-coding LOC102025347 calcitonin FOUND IN neuronal cell body NW_004955414 30038416 30041811 - 102025347 AGCD01015726;GBDI01013654;XM_005380336;XM_005380337 XP_005380393;XP_005380394 MODEL 8969757 protein-coding LOC102026742 mitochondrial import inner membrane translocase subunit Tim8 A NW_004955414 24930542 24931179 - 102026742 AGCD01015562;GBBH01102742;XM_005380254 XP_005380311 MODEL 8742517 protein-coding LOC102024243 olfactory receptor 2F1-like NW_004955491 318142 319272 + 102024243 AGCD01060329;GBDF01212144;XM_005404880 XP_005404937 MODEL 10068087 ncrna LOC106147024 uncharacterized LOC106147024 NW_004955512 3700766 3783966 - 106147024 AGCD01066706;AGCD01066707;AGCD01066708;AGCD01066709;GBDI01142976;XR_001231721 MODEL 8787602 protein-coding Tnfsf11 TNF superfamily member 11 ENCODES a protein that exhibits cytokine activity (ortholog); identical protein binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); bone development (ortholog); bone resorption (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; ASSOCIATED WITH Alveolar Bone Loss (ortholog); autosomal recessive osteopetrosis 2 (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog) NW_004955518 431401 462063 + 102003574 AGCD01067735;GBCE01044414;XM_005409050;XM_005409053;XM_005409054;XM_005409055;XM_013506972 XP_005409107;XP_005409110;XP_005409111;XP_005409112;XP_013362426 MODEL 10240833 pseudo LOC106148114 sphingosine-1-phosphate phosphatase 1 pseudogene NW_004955416 15847381 15848298 - 106148114 AGCD01017344 MODEL 8925843 protein-coding LOC102023929 olfactory receptor 18-like NW_004955495 692210 700229 + 102023929 AGCD01061650;XM_013505045 XP_013360499 MODEL 10346791 ncrna LOC106149312 uncharacterized LOC106149312 NW_004955405 18567091 18571178 - 106149312 AGCD01005021;AGCD01005022;XR_001235402;XR_001235405 MODEL 8911095 protein-coding Tfe3 transcription factor binding to IGHM enhancer 3 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN humoral immune response (ortholog); lysosome organization (ortholog); negative regulation of cold-induced thermogenesis (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); INTELLECTUAL DEVELOPMENTAL DISORDER, X-LINKED, SYNDROMIC, WITH PIGMENTARY MOSAICISM AND COARSE FACIES (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lysosomal membrane (ortholog) NW_004955543 547037 561073 - 102004521 AGCD01071591;GBDK01017184;XM_005411307;XM_005411309;XM_005411310 XP_005411364;XP_005411366;XP_005411367 MODEL 8881814 ncrna LOC102006395 uncharacterized LOC102006395 NW_004955440 17375532 17384121 + 102006395 AGCD01036569;GBDF01080603;XR_262034 MODEL 8856089 pseudo LOC102009017 60S ribosomal protein L14 pseudogene NW_004955408 1564719 1565405 - 102009017 AGCD01007965 MODEL 8908726 pseudo LOC102029479 general transcription factor IIF subunit 2 pseudogene NW_004955457 8700364 8704656 + 102029479 AGCD01046915 MODEL 39133640 snrna U4 U4 spliceosomal RNA 8864242 protein-coding Srpx2 sushi repeat containing protein X-linked 2 ENCODES a protein that exhibits hepatocyte growth factor binding (ortholog); identical protein binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN cell motility (ortholog); cell-cell adhesion (ortholog); positive regulation of cell migration involved in sprouting angiogenesis (ortholog); ASSOCIATED WITH epilepsy (ortholog); ROLANDIC EPILEPSY, INTELLECTUAL DISABILITY, AND SPEECH DYSPRAXIA, X-LINKED (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); excitatory synapse (ortholog) NW_004955503 6795793 6817779 + 102020822 AGCD01064770;GBCQ01123552;XM_005406933;XM_005406934;XM_013505861 XP_005406990;XP_005406991;XP_013361315 MODEL 8950227 protein-coding Polr2h RNA polymerase II, I and III subunit H ENCODES a protein that exhibits single-stranded DNA binding (ortholog); INVOLVED IN termination of RNA polymerase III transcription (ortholog); transcription by RNA polymerase II (ortholog); transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription pathway; RNA polymerase III transcription pathway; FOUND IN nucleus (ortholog); protein-DNA complex (ortholog); RNA polymerase I complex (ortholog) NW_004955420 23132053 23136954 - 102017989 AGCD01021228;GBCQ01122427;XM_005383311 XP_005383368 MODEL 8770726 pseudo LOC102025682 protein Spindly-like NW_004955416 7505924 7508779 + 102025682 AGCD01016984 MODEL 39133454 snorna SNORD58 Small nucleolar RNA SNORD58 8743577 protein-coding LOC102010175 sulfotransferase 1A1-like NW_004955493 6792319 6795493 - 102010175 AGCD01061139;AGCD01061140;GBCQ01097961;GBCQ01097964;XM_013504817 XP_013360271 MODEL 8995118 protein-coding Slc35d3 solute carrier family 35 member D3 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); UDP-glucose transmembrane transporter activity (ortholog); INVOLVED IN energy homeostasis (ortholog); platelet dense granule organization (ortholog); positive regulation of autophagy (ortholog); FOUND IN early endosome (ortholog); early endosome membrane (ortholog); endoplasmic reticulum (ortholog) NW_004955439 60689 63968 - 102019203 AGCD01035579;XM_005390458 XP_005390515 MODEL 8777636 protein-coding LOC102012139 gonadotropin-releasing hormone receptor NW_004955447 5179231 5190335 + 102012139 AGCD01040748;XM_005392835;XM_005392836 XP_005392892;XP_005392893 MODEL 8850790 protein-coding LOC102012566 fatty acid desaturase 2-like protein FADS2P1 NW_004955511 1986298 2020040 + 102012566 AGCD01066386;AGCD01066387;GBCE01044968;XM_005407981 XP_005408038 MODEL 8850047 protein-coding Scin scinderin INVOLVED IN actin filament capping (ortholog); actin filament severing (ortholog); negative regulation of cell population proliferation (ortholog); FOUND IN brush border (ortholog); protein-containing complex (ortholog) NW_004955410 16286131 16358286 + 102016989 AGCD01010956;AGCD01010957;AGCD01010958;GBBH01031222;GBDJ01084886;XM_005377322 XP_005377379 MODEL 9035741 protein-coding Tshr thyroid stimulating hormone receptor ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); protein-containing complex binding (ortholog); signaling receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adult locomotory behavior (ortholog); B cell differentiation (ortholog); ASSOCIATED WITH adenoma (ortholog); Adrenal Gland Neoplasms (ortholog); autoimmune thyroiditis (ortholog); FOUND IN basolateral plasma membrane (ortholog); plasma membrane (ortholog); signaling receptor complex (ortholog) NW_004955438 4601765 4758922 + 102024276 AGCD01035046;AGCD01035047;AGCD01035048;GBDF01190268;XM_005390231;XM_005390232;XM_005390233;XM_013517232;XM_013517233 XP_005390288;XP_005390289;XP_005390290;XP_013372686;XP_013372687 MODEL 8920424 protein-coding Pam16 presequence translocase associated motor 16 INVOLVED IN DNA biosynthetic process (ortholog); negative regulation of apoptotic DNA fragmentation (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN presequence pathway of mitochondrial protein import; ASSOCIATED WITH Rubinstein-Taybi syndrome (ortholog); spondylometaphyseal dysplasia Megarbane-Dagher-Melike type (ortholog); FOUND IN cytoplasm (ortholog); matrix side of mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog) NW_004955442 13087082 13097048 + 102012808 AGCD01037757;GBDF01010977;XM_005391299;XM_005391300;XM_005391301 XP_005391356;XP_005391357;XP_005391358 MODEL 10184160 ncrna LOC106146595 uncharacterized LOC106146595 NW_004955486 9052370 9056089 - 106146595 AGCD01059161;GBDF01056627;XR_001231097 MODEL 8879679 protein-coding LOC102018593 short transient receptor potential channel 2-like NW_004955414 19424090 19460149 + 102018593 AGCD01015315;AGCD01015316;AGCD01015317;AGCD01081640;GBDF01086082;XM_013511714 XP_013367168 MODEL 9006037 protein-coding LOC102003590 olfactory receptor 1361-like NW_004955442 14147658 14149906 - 102003590 AGCD01037802;XM_013517700 XP_013373154 MODEL 39132953 misc_rna Y_RNA Y RNA 10114796 ncrna LOC106149313 uncharacterized LOC106149313 NW_004955442 16390890 16405692 - 106149313 AGCD01037899;AGCD01037900;GBDF01111065;XR_001235403;XR_001235404 MODEL 8865960 protein-coding Krt23 keratin 23 NW_004955451 15346925 15360127 - 102020873 AGCD01043605;GBCE01032364;XM_005394377 XP_005394434 MODEL 8893524 protein-coding LOC102006024 ovomucoid-like NW_004955415 5904647 5909835 - 102006024 AGCD01016002;GBDF01085593;XM_005380639 XP_005380696 MODEL 8980437 pseudo LOC102027095 solute carrier family 35 member E3 pseudogene NW_004955508 56361 88674 - 102027095 AGCD01065728;AGCD01065729 MODEL 9051537 protein-coding Igfbp4 insulin like growth factor binding protein 4 ENCODES a protein that exhibits insulin-like growth factor binding (ortholog); INVOLVED IN positive regulation of insulin-like growth factor receptor signaling pathway (ortholog); positive regulation of MAPK cascade (ortholog); regulation of cell growth (ortholog); PARTICIPATES IN insulin-like growth factor signaling pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); FOUND IN extracellular region (ortholog) NW_004955451 15027184 15029830 + 102022350 AGCD01043593;GBBH01003732;GBDJ01017128;XM_013519360 XP_013374814 MODEL 8908494 protein-coding Phf8 PHD finger protein 8 ENCODES a protein that exhibits chromatin binding (ortholog); histone demethylase activity (ortholog); histone H3K27me2/H3K27me3 demethylase activity (ortholog); INVOLVED IN G1/S transition of mitotic cell cycle (ortholog); negative regulation of rDNA heterochromatin formation (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); prostate cancer (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955475 1105619 1230758 - 102019908 AGCD01054733;AGCD01054734;AGCD01054735;AGCD01054736;AGCD01054737;AGCD01054738;GBCB01086765;XM_005401514;XM_005401515;XM_005401516 XP_005401571;XP_005401572;XP_005401573 MODEL 9039898 ncrna LOC102015525 uncharacterized LOC102015525 NW_004955485 770228 773226 + 102015525 AGCD01058458;GBDF01201799;XR_263901 MODEL 8926533 ncrna LOC102028427 uncharacterized LOC102028427 NW_004955422 13406988 13411453 - 102028427 AGCD01022823;XR_260870 MODEL 8899365 protein-coding LOC102021528 probable C-mannosyltransferase DPY19L2 NW_004955460 5077043 5137707 + 102021528 AGCD01048446;AGCD01048447;AGCD01048448;GBDF01005800;XM_013521261;XM_013521262;XM_013521263 XP_013376715;XP_013376716;XP_013376717 MODEL 8834957 protein-coding Bnc2 basonuclin zinc finger protein 2 ENCODES a protein that exhibits DNA binding (ortholog); rDNA binding (ortholog); INVOLVED IN endochondral bone growth (ortholog); mesenchyme development (ortholog); roof of mouth development (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); cleft palate (ortholog); Congenital Lower Urinary Tract Obstruction (ortholog); FOUND IN chromatin (ortholog); fibrillar center (ortholog); nuclear body (ortholog) NW_004955434 19156746 19568983 - 102021793 AGCD01032583;AGCD01032584;AGCD01032585;AGCD01032586;AGCD01032587;AGCD01032588;AGCD01032589;GBDJ01273240;XM_005388715;XM_005388716;XM_005388717;XM_005388718;XM_005388719;XM_013516364;XM_013516365 XP_005388772;XP_005388773;XP_005388774;XP_005388775;XP_005388776;XP_013371818;XP_013371819 MODEL 8718165 ncrna LOC102027745 uncharacterized LOC102027745 NW_004955477 10389637 10391254 + 102027745 AGCD01055695;GBDK01035566;XR_263669;XR_263670 MODEL 10219514 ncrna LOC106146477 uncharacterized LOC106146477 NW_004955481 1127922 1133398 - 106146477 AGCD01056825;GBBH01200464;XR_001230923 MODEL 8897533 ncrna LOC102023931 uncharacterized LOC102023931 NW_004955424 13408061 13417300 + 102023931 AGCD01024633;GBDF01238765;XR_261062 MODEL 8808177 protein-coding LOC102012140 olfactory receptor 2G3-like NW_004955576 1369561 1370502 - 102012140 AGCD01075374;XM_005413955 XP_005414012 MODEL 9005771 ncrna LOC102020748 uncharacterized LOC102020748 NW_004955405 18807578 18812159 + 102020748 AGCD01005027;GBCB01057815;XR_259389 MODEL 9067374 pseudo LOC102007478 ferritin light chain pseudogene NW_004955566 8758 10353 - 102007478 AGCD01074343;XM_005413274 MODEL 8872663 protein-coding LOC102030196 uncharacterized LOC102030196 NW_004955482 8346822 8348888 + 102030196 AGCD01057517;GBDJ01104313;XM_013503629 XP_013359083 MODEL 10251891 ncrna LOC106146742 uncharacterized LOC106146742 NW_004955494 7481207 7513550 + 106146742 AGCD01061553;GBBH01096829;XR_001231304;XR_001231305;XR_001231306;XR_001231307;XR_001231308 MODEL 39133641 snrna U4 U4 spliceosomal RNA 9019231 protein-coding LOC102003265 ankyrin repeat domain-containing protein 26-like NW_004955510 3513464 3597054 + 102003265 AGCD01066239;AGCD01066240;AGCD01066241;AGCD01066242;GBDF01123488;XM_005407878 XP_005407935 MODEL 10193128 ncrna LOC106146597 uncharacterized LOC106146597 NW_004955486 4868603 4870911 - 106146597 AGCD01059070;AGCD01059071;GBDF01144573;XR_001231098 MODEL 8740920 protein-coding LOC102009376 olfactory receptor 13J1 NW_004955472 452846 454056 + 102009376 AGCD01053339;XM_005401175 XP_005401232 MODEL 8976513 ncrna LOC102025348 uncharacterized LOC102025348 NW_004955471 8707226 8728861 + 102025348 AGCD01053191;AGCD01053192;GBDK01310632;XR_001237062 MODEL 10267307 ncrna LOC106150132 uncharacterized LOC106150132 NW_004955465 11268986 11272735 - 106150132 AGCD01050522;XR_001236756 MODEL 8986037 ncrna LOC102004620 uncharacterized LOC102004620 NW_004955497 6989452 7027099 - 102004620 AGCD01062651;AGCD01062652;AGCD01062653;AGCD01062654;GBBH01127272;XR_001231442;XR_001231443;XR_001231444 MODEL 10190566 ncrna LOC106146354 uncharacterized LOC106146354 NW_004955475 1778655 1792161 - 106146354 AGCD01054758;GBBH01086774;XR_001230755 MODEL 8713714 ncrna LOC102026743 uncharacterized LOC102026743 NW_004955414 33712969 33718861 + 102026743 AGCD01015821;GBDF01045373;XR_260234 MODEL 9010991 protein-coding Srr serine racemase ENCODES a protein that exhibits ATP binding (ortholog); calcium ion binding (ortholog); D-serine ammonia-lyase activity (ortholog); INVOLVED IN D-serine biosynthetic process (ortholog); L-serine metabolic process (ortholog); pyruvate biosynthetic process (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH Animal Disease Models (ortholog); Experimental Liver Cirrhosis (ortholog); lung adenocarcinoma (ortholog); FOUND IN apical part of cell (ortholog); cytoplasm (ortholog); neuronal cell body (ortholog) NW_004955481 919692 940066 - 102009835 AGCD01056816;AGCD01056817;AGCD01056818;GBDK01341785;XM_005402588;XM_013503364;XM_013503365;XM_013503366;XM_013503367;XM_013503368;XM_013503369;XM_013503370;XM_013503371;XM_013503372;XM_013503373;XM_013503374 XP_005402645;XP_013358818;XP_013358819;XP_013358820;XP_013358821;XP_013358822;XP_013358823;XP_013358824;XP_013358825;XP_013358826;XP_013358827;XP_013358828 MODEL 10256809 ncrna LOC106147025 uncharacterized LOC106147025 NW_004955512 2736398 2750929 - 106147025 AGCD01066684;XR_001231722 MODEL 8761523 pseudo LOC102018191 elongation factor 1-alpha 1-like NW_004955487 4175137 4176506 - 102018191 AGCD01059300 MODEL 8746147 protein-coding Pkd2l2 polycystin 2 like 2, transient receptor potential cation channel NW_004955418 2443557 2488860 - 102007768 AGCD01018770;GBDF01088316;XM_013512989;XM_013512990;XM_013512991;XM_013512992;XR_001233530 XP_013368443;XP_013368444;XP_013368445;XP_013368446 MODEL 8730423 protein-coding Tnfsf13b TNF superfamily member 13b INVOLVED IN B cell activation (ortholog); B cell costimulation (ortholog); B cell differentiation (ortholog); ASSOCIATED WITH Chronic Hepatitis B (ortholog); COVID-19 (ortholog); IgA glomerulonephritis (ortholog); FOUND IN cytoplasm (ortholog); perinuclear region of cytoplasm (ortholog); plasma membrane (ortholog) NW_004955404 3536041 3573242 - 102023549 AGCD01003277;AGCD01003278;GBCQ01094161;GBDI01254603;XM_005374008 XP_005374065 MODEL 8846730 pseudo LOC102025350 mas-related G-protein coupled receptor member X1-like NW_004955414 33638100 33644821 - 102025350 AGCD01015816;AGCD01015817 MODEL 9065587 protein-coding LOC102006400 galactoside 2-alpha-L-fucosyltransferase 2-like NW_004955559 1877285 1894905 - 102006400 AGCD01073677;AGCD01073678;GBDF01145381;XM_005412939 XP_005412996 MODEL 9061273 protein-coding Slc35d4 solute carrier family 35 member D4 ENCODES a protein that exhibits UDP-N-acetylglucosamine transmembrane transporter activity (ortholog); INVOLVED IN UDP-N-acetylglucosamine transmembrane transport (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955402 11514232 11641494 - 102003502 AGCD01000301;AGCD01000302;AGCD01000303;AGCD01000304;GBDJ01391258;XM_005372695;XM_005372698;XM_013503380;XM_013503447;XM_013503471;XM_013503525;XM_013503621;XM_013503657;XM_013503693;XM_013503737;XM_013503805;XR_001230957;XR_001230962;XR_001230968;XR_001231032 XP_005372752;XP_005372755;XP_013358834;XP_013358901;XP_013358925;XP_013358979;XP_013359075;XP_013359111;XP_013359147;XP_013359191;XP_013359259 MODEL 8792209 protein-coding Ldlr low density lipoprotein receptor ENCODES a protein that exhibits amyloid-beta binding (ortholog); identical protein binding (ortholog); low-density lipoprotein particle binding (ortholog); INVOLVED IN amyloid-beta clearance (ortholog); amyloid-beta clearance by cellular catabolic process (ortholog); artery development (ortholog); PARTICIPATES IN atherosclerosis pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); Animal Toxoplasmosis (ortholog); FOUND IN apical part of cell (ortholog); basolateral plasma membrane (ortholog); caveola (ortholog) NW_004955495 2114702 2135584 + 102029196 AGCD01061748;GBCE01114790;XM_013505178 XP_013360632 MODEL 9051909 protein-coding Pamr1 peptidase domain containing associated with muscle regeneration 1 ASSOCIATED WITH congestive heart failure (ortholog); Experimental Liver Cirrhosis (ortholog); hepatocellular carcinoma (ortholog) NW_004955422 10734673 10913258 + 102009067 AGCD01022744;AGCD01022745;AGCD01022746;AGCD01022747;GBDI01291219;XM_005384122;XM_005384123;XM_013514345;XM_013514346;XM_013514347 XP_005384179;XP_005384180;XP_013369799;XP_013369800;XP_013369801 MODEL 9044863 ncrna LOC102029483 uncharacterized LOC102029483 NW_004955409 3905675 3907273 + 102029483 AGCD01009266;GBDF01193359;XR_001232634 MODEL 9006712 ncrna LOC102027746 uncharacterized LOC102027746 NW_004955416 25657991 25660189 + 102027746 AGCD01017590;GBDF01303756;XR_001233297;XR_260423 MODEL 10102462 pseudo LOC106146478 calmodulin pseudogene NW_004955406 38065949 38066443 + 106146478 AGCD01006587 MODEL 8985349 protein-coding Sipa1l1 signal induced proliferation associated 1 like 1 ENCODES a protein that exhibits actin filament binding (ortholog); ephrin receptor binding (ortholog); protein kinase binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); activation of GTPase activity (ortholog); ephrin receptor signaling pathway (ortholog); ASSOCIATED WITH diastolic heart failure (ortholog); systemic juvenile rheumatoid arthritis (ortholog); Weight Gain (ortholog); FOUND IN actin cytoskeleton (ortholog); dendritic spine (ortholog); glutamatergic synapse (ortholog) NW_004955523 3545807 3908329 - 102005837 AGCD01068616;AGCD01068617;AGCD01068618;AGCD01068619;AGCD01068620;AGCD01068621;AGCD01068622;GBDF01128061;XM_005409444;XM_005409446;XM_005409448;XM_005409449;XM_005409450;XM_013507169;XR_264641 XP_005409501;XP_005409503;XP_005409505;XP_005409506;XP_005409507;XP_013362623 MODEL 8761020 protein-coding Necab3 N-terminal EF-hand calcium binding protein 3 INVOLVED IN regulation of amyloid precursor protein biosynthetic process (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955422 27644913 27660538 + 102003462 AGCD01023331;GBCB01085847;GBDJ01171994;XM_013514323;XM_013514324 XP_013369777;XP_013369778 MODEL 10182225 ncrna LOC106149314 uncharacterized LOC106149314 NW_004955442 6846517 6848091 - 106149314 AGCD01037602;GBDK01148611;XR_001235408 MODEL 9049329 ncrna LOC102019734 uncharacterized LOC102019734 NW_004955541 878508 883934 - 102019734 AGCD01071363;GBDF01003819;XR_264831 MODEL 8989480 protein-coding Krt24 keratin 24 NW_004955451 15187535 15191685 - 102017416 AGCD01043600;GBCE01081116;XM_005394368 XP_005394425 MODEL 8872080 protein-coding LOC102007481 UDP-glucuronosyltransferase 2A3-like NW_004955447 3273792 3279756 + 102007481 AGCD01040590;GBDF01017429;GBDF01017432;XM_013518565 XP_013374019 MODEL 9017316 ncrna LOC102024251 uncharacterized LOC102024251 NW_004955423 17070325 17072112 - 102024251 AGCD01023845;GBDF01112738;XR_001234037;XR_260979 MODEL 8791806 protein-coding Polr2i RNA polymerase II subunit I INVOLVED IN transcription by RNA polymerase II (ortholog); transcription elongation by RNA polymerase II (ortholog); transcription initiation at RNA polymerase II promoter (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase II, core complex (ortholog) NW_004955468 2494120 2495578 + 102009928 AGCD01051823;GBDI01059799;XM_005399922 XP_005399979 MODEL 8946223 ncrna LOC102003268 uncharacterized LOC102003268 NW_004955431 22677734 22698546 + 102003268 AGCD01030517;AGCD01030518;GBDF01235025;XR_001234627;XR_261493 MODEL 10198734 protein-coding LOC106148115 uncharacterized LOC106148115 NW_004955416 7190348 7194939 + 106148115 AGCD01016969;GBCQ01154219;XM_013512413 XP_013367867 MODEL 8750554 pseudo LOC102012567 transcription initiation factor TFIID subunit 2 pseudogene NW_004955511 981095 984836 - 102012567 AGCD01066350 MODEL 8786056 protein-coding Sclt1 sodium channel and clathrin linker 1 ENCODES a protein that exhibits clathrin binding (ortholog); sodium channel regulator activity (ortholog); INVOLVED IN cilium assembly (ortholog); clustering of voltage-gated sodium channels (ortholog); ASSOCIATED WITH astigmatism (ortholog); autosomal recessive polycystic kidney disease (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955428 12583203 12753577 + 102027432 AGCD01027931;AGCD01027932;AGCD01027933;GBDF01159365;XM_005386718;XM_013515272;XM_013515273;XM_013515274 XP_005386775;XP_013370726;XP_013370727;XP_013370728 MODEL 9002445 protein-coding Tshz1 teashirt zinc finger homeobox 1 INVOLVED IN anterior/posterior pattern specification (ortholog); middle ear morphogenesis (ortholog); soft palate development (ortholog); ASSOCIATED WITH Congenital Aural Atresia (ortholog); Familial Prostate Cancer (ortholog); intellectual disability (ortholog) NW_004955402 58695150 58717926 + 102015164 AGCD01001539;GBDK01397330;XM_013511962 XP_013367416 MODEL 8889169 protein-coding Spidr scaffold protein involved in DNA repair INVOLVED IN cellular response to camptothecin (ortholog); cellular response to hydroxyurea (ortholog); cellular response to ionizing radiation (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); ovarian dysgenesis 9 (ortholog); primary ovarian insufficiency 16 (ortholog); FOUND IN nuclear chromosome (ortholog); nucleoplasm (ortholog); Shu complex (ortholog) NW_004955454 7360144 7710077 + 102021091 AGCD01045298;AGCD01045299;AGCD01045300;AGCD01045301;AGCD01045302;GBDF01249752;XM_005396031;XM_005396032;XM_013520203;XM_013520205 XP_005396088;XP_005396089;XP_013375657;XP_013375659 MODEL 8939945 protein-coding Etfbkmt electron transfer flavoprotein subunit beta lysine methyltransferase ENCODES a protein that exhibits heat shock protein binding (ortholog); protein-lysine N-methyltransferase activity (ortholog); INVOLVED IN negative regulation of fatty acid beta-oxidation using acyl-CoA dehydrogenase (ortholog); peptidyl-lysine trimethylation (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955411 35999583 36025805 + 102028280 AGCD01012462;AGCD01012463;GBBH01053291;XM_005377897;XM_005377898;XM_005377899;XM_005377900;XR_001232832 XP_005377954;XP_005377955;XP_005377956;XP_005377957 MODEL 8881468 protein-coding LOC102018604 neutrophil gelatinase-associated lipocalin-like NW_004955419 330399 334636 - 102018604 AGCD01019576;XM_013513093 XP_013368547 MODEL 8891245 protein-coding Tnfsf14 TNF superfamily member 14 ENCODES a protein that exhibits cysteine-type endopeptidase inhibitor activity involved in apoptotic process (ortholog); identical protein binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); positive regulation of myoblast differentiation (ortholog); positive regulation of myoblast fusion (ortholog); ASSOCIATED WITH IgA glomerulonephritis (ortholog); multiple sclerosis (ortholog); rheumatoid arthritis (ortholog); FOUND IN decoy receptor complex (ortholog); plasma membrane (ortholog); tumor necrosis factor receptor superfamily complex (ortholog) NW_004955495 2829314 2834826 + 102007031 AGCD01061803;GBDI01207122;XM_005405702 XP_005405759 MODEL 39132954 misc_rna Y_RNA Y RNA 8793096 protein-coding LOC102009018 up-regulator of cell proliferation NW_004955456 7974915 7999963 + 102009018 AGCD01046440;AGCD01046441;AGCD01046442;AGCD01046443;GBBH01208050;GBCE01137430;XM_013520521 XP_013375975 MODEL 39133453 snorna SNORD58 Small nucleolar RNA SNORD58 8823245 pseudo LOC102010184 olfactory receptor 5A1-like NW_004955511 3897218 3898125 - 102010184 AGCD01066481 MODEL 8941172 protein-coding LOC102025684 protein SMG5-like NW_004955417 17042988 17151009 + 102025684 AGCD01018281;AGCD01018282;AGCD01018283;AGCD01018284;XM_013512692;XM_013512693;XM_013512694;XM_013512695 XP_013368146;XP_013368147;XP_013368148;XP_013368149 MODEL 10184217 ncrna LOC106150133 uncharacterized LOC106150133 NW_004955465 2976003 2977065 + 106150133 AGCD01050365;GBDI01346536;XR_001236761 MODEL 8720354 protein-coding LOC102028430 prolactin-inducible protein homolog NW_004955494 506278 511778 - 102028430 AGCD01061380;GBDF01274186;XM_013504916 XP_013360370 MODEL 8926991 protein-coding LOC102021530 uncharacterized LOC102021530 NW_004955409 2232328 2240671 + 102021530 AGCD01009192;AGCD01009193;GBDI01039009;XM_013510034 XP_013365488 MODEL 8805867 ncrna LOC102018192 uncharacterized LOC102018192 NW_004955491 8497950 8499449 - 102018192 AGCD01060616;GBDF01057299;XR_264041;XR_264042 MODEL 9029641 ncrna LOC102025352 uncharacterized LOC102025352 NW_004955415 29717377 29729552 + 102025352 AGCD01016654;GBBH01180208;XR_260323 MODEL 8802265 protein-coding Krt25 keratin 25 ENCODES a protein that exhibits protein heterodimerization activity (ortholog); INVOLVED IN cytoskeleton organization (ortholog); hair cycle (ortholog); hair follicle morphogenesis (ortholog); ASSOCIATED WITH Autosomal Recessive Woolly Hair (ortholog); autosomal recessive woolly hair 3 (ortholog); hypotrichosis 8 (ortholog); FOUND IN keratin filament (ortholog) NW_004955451 15216868 15223383 - 102018554 AGCD01043602;GBDF01132093;XM_005394372 XP_005394429 MODEL 8787493 protein-coding Bnip1 BCL2 interacting protein 1 ENCODES a protein that exhibits calcium-induced calcium release activity (ortholog); SNAP receptor activity (ortholog); INVOLVED IN apoptotic process (ortholog); apoptotic process in response to mitochondrial fragmentation (ortholog); endoplasmic reticulum membrane fusion (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; ASSOCIATED WITH Down syndrome (ortholog); spondyloepiphyseal dysplasia congenita (ortholog); Spondylopeiphyseal dysplasia, Holling type (ortholog); FOUND IN COPI-coated vesicle (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955408 25774305 25788802 + 102029267 AGCD01008652;GBDF01126859;XM_005376349 XP_005376406 MODEL 8765969 pseudo LOC102020759 translationally-controlled tumor protein pseudogene NW_004955455 13068051 13113202 + 102020759 AGCD01046057 MODEL 8921635 pseudo LOC102030201 calcyclin-binding protein pseudogene NW_004955420 25976425 25977192 + 102030201 AGCD01021383 MODEL 8887927 pseudo LOC102006025 copine-8 pseudogene NW_004955474 8226314 8227620 + 102006025 AGCD01054546 MODEL 39133647 snrna U4 U4 spliceosomal RNA 10322394 ncrna LOC106146598 uncharacterized LOC106146598 NW_004955486 4124722 4132760 - 106146598 AGCD01059055;XR_001231099 MODEL 8850434 protein-coding LOC102027748 E3 ubiquitin-protein ligase TRIM38-like NW_004955483 1023452 1034854 - 102027748 AGCD01057638;AGCD01057639;GBCB01009534;GBDF01184878;XM_013503784 XP_013359238 MODEL 8811919 ncrna LOC102009377 uncharacterized LOC102009377 NW_004955474 7388629 7400816 + 102009377 AGCD01054519;GBDF01303398;XR_001230720;XR_263601 MODEL 9015824 protein-coding Etfdh electron transfer flavoprotein dehydrogenase ENCODES a protein that exhibits 4 iron, 4 sulfur cluster binding (ortholog); electron transfer activity (ortholog); electron-transferring-flavoprotein dehydrogenase activity (ortholog); INVOLVED IN electron transport chain (ortholog); fatty acid beta-oxidation using acyl-CoA dehydrogenase (ortholog); response to oxidative stress (ortholog); PARTICIPATES IN fatty acid beta degradation pathway; ASSOCIATED WITH disease of metabolism (ortholog); genetic disease (ortholog); hypertrophic cardiomyopathy (ortholog); FOUND IN membrane (ortholog); mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog) NW_004955471 12282601 12308792 + 102018591 AGCD01053282;AGCD01053283;AGCD01053284;AGCD01053285;GBBH01142163;GBDF01124988;XM_005400964 XP_005401021 MODEL 8961721 ncrna LOC102004621 uncharacterized LOC102004621 NW_004955505 1555708 1583604 - 102004621 AGCD01064974;AGCD01064975;GBDF01014944;XR_001231574;XR_264301 MODEL 8803378 protein-coding Sipa1l2 signal induced proliferation associated 1 like 2 INVOLVED IN presynaptic signal transduction (ortholog); ASSOCIATED WITH High Myopia (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density, intracellular component (ortholog); presynapse (ortholog) NW_004955492 6611430 6709016 + 102004492 AGCD01060770;AGCD01060771;GBDF01252947;XM_013504726;XM_013504727;XM_013504728;XM_013504729 XP_013360180;XP_013360181;XP_013360182;XP_013360183 MODEL 8790749 ncrna LOC102019735 uncharacterized LOC102019735 NW_004955438 17701064 17708297 - 102019735 AGCD01035450;GBDF01079005;XR_261945 MODEL 10286401 protein-coding LOC106147026 cytochrome c oxidase assembly protein COX16 homolog, mitochondrial-like NW_004955512 1727629 1783079 + 106147026 AGCD01066649;AGCD01066650;AGCD01066651;AGCD01066652;XM_013506525 XP_013361979 MODEL 9042814 pseudo LOC102026744 protein-L-isoaspartate O-methyltransferase domain-containing protein 1 pseudogene NW_004955414 20641934 20642478 - 102026744 AGCD01015385 MODEL 8774020 protein-coding Tfeb transcription factor EB ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN antibacterial innate immune response (ortholog); cellular response to amino acid starvation (ortholog); cellular response to starvation (ortholog); ASSOCIATED WITH Nerve Degeneration (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); lysosomal membrane (ortholog) NW_004955437 8102241 8141001 - 102013864 AGCD01034478;AGCD01034479;GBDF01156776;XM_005389689;XM_005389690 XP_005389746;XP_005389747 MODEL 8745653 protein-coding Phgdh phosphoglycerate dehydrogenase ENCODES a protein that exhibits phosphoglycerate dehydrogenase activity (ortholog); INVOLVED IN G1 to G0 transition (ortholog); glial cell development (ortholog); glycine metabolic process (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); Breast Neoplasms (ortholog); epilepsy (ortholog); FOUND IN cytosol (ortholog) NW_004955435 22757473 22803123 + 102018019 AGCD01033520;GBDK01323915;XM_005389088 XP_005389145 MODEL 9017910 pseudo LOC102003591 etoposide-induced protein 2.4 homolog pseudogene NW_004955442 5873690 5874760 - 102003591 AGCD01037571 MODEL 8815011 pseudo LOC102009380 40S ribosomal protein S8 pseudogene NW_004955415 27385133 27385744 + 102009380 AGCD01016630 MODEL 9042862 ncrna LOC102003269 uncharacterized LOC102003269 NW_004955515 5580629 5582659 - 102003269 AGCD01067363;AGCD01067364;GBDJ01129228;XR_264529 MODEL 8962038 pseudo LOC102012571 peptidyl-prolyl cis-trans isomerase A pseudogene NW_004955434 15042346 15042821 - 102012571 AGCD01032459 MODEL 8701894 ncrna LOC102023932 uncharacterized LOC102023932 NW_004955497 4837987 4866672 + 102023932 AGCD01062586;GBDF01305446;XR_264206 MODEL 8889468 protein-coding LOC102006403 cytochrome P450 3A9-like NW_004955573 1105990 1253925 - 102006403 AGCD01075020;AGCD01075021;AGCD01075022;AGCD01075023;AGCD01075024;AGCD01075025;AGCD01075026;AGCD01075027;AGCD01075028;AGCD01075029;AGCD01075030;AGCD01075031;AGCD01075032;AGCD01075033;AGCD01075034;GBDJ01045815;XM_005413765;XM_005413766;XM_005413767;XM_005413768 XP_005413822;XP_005413823;XP_005413824;XP_005413825 MODEL 10260246 ncrna LOC106146743 uncharacterized LOC106146743 NW_004955494 7477230 7479948 + 106146743 AGCD01061553;GBDJ01194486;XR_001231309 MODEL 8916569 protein-coding Ldlrad1 low density lipoprotein receptor class A domain containing 1 NW_004955464 5233134 5243730 + 102006435 AGCD01050001;GBDJ01227901;XM_005398540 XP_005398597 MODEL 8972862 protein-coding Slc35e1 solute carrier family 35 member E1 FOUND IN Golgi apparatus (ortholog) NW_004955524 1204227 1212833 + 102027333 AGCD01068739;GBCE01118450;GBDK01092588;XM_005409500 XP_005409557 MODEL 8817967 protein-coding LOC102009019 glycosylation-dependent cell adhesion molecule 1-like NW_004955458 1841699 1848240 - 102009019 AGCD01047206;GBCB01051309;XM_005397231 XP_005397288 MODEL 8829035 protein-coding LOC102018607 probable ATP-dependent RNA helicase DDX5 NW_004955420 170507 219822 - 102018607 AGCD01020535;AGCD01020536;AGCD01020537;AGCD01020538;GBBH01074208;XM_013513565;XR_001233769;XR_001233770;XR_001233771;XR_001233772;XR_001233773 XP_013369019 MODEL 8807142 protein-coding Necap1 NECAP endocytosis associated 1 INVOLVED IN endocytosis (ortholog); presynaptic endocytosis (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 21 (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN clathrin vesicle coat (ortholog); clathrin-coated pit (ortholog); presynapse (ortholog) NW_004955413 6737785 6751672 + 102029166 AGCD01013773;GBDF01015578;XM_005378916 XP_005378973 MODEL 9039139 pseudo LOC102015530 40S ribosomal protein S12 pseudogene NW_004955492 1654556 1654953 - 102015530 AGCD01060664 MODEL 8843695 protein-coding Tnfsf15 TNF superfamily member 15 INVOLVED IN activation of NF-kappaB-inducing kinase activity (ortholog); ASSOCIATED WITH Crohn's disease (ortholog); Enteritis (ortholog); Inflammation (ortholog); FOUND IN plasma membrane (ortholog) NW_004955419 12863617 12884498 + 102006778 AGCD01019987;GBCQ01154220;XM_005382621 XP_005382678 MODEL 8937825 protein-coding LOC102024255 melanoma-associated antigen 8-like NW_004955498 3964985 3967659 - 102024255 AGCD01062955;GBDF01220827;XM_005406404 XP_005406461 MODEL 9027148 pseudo LOC102007484 arylacetamide deacetylase-like 2 pseudogene NW_004955448 3318723 3319795 - 102007484 AGCD01041327 MODEL 8940300 protein-coding Srrd SRR1 domain containing INVOLVED IN regulation of circadian rhythm (ortholog); regulation of heme biosynthetic process (ortholog); FOUND IN cytoplasm (ortholog) NW_004955455 1076113 1090346 + 102015806 AGCD01045568;GBDF01188676;XM_005396149;XM_005396150;XM_005396151;XM_005396152 XP_005396206;XP_005396207;XP_005396208;XP_005396209 MODEL 8979095 protein-coding LOC102006026 cystatin-13-like NW_004955415 30473505 30482358 + 102006026 AGCD01016664;GBDF01008193;XM_005380973 XP_005381030 MODEL 8886486 protein-coding Polr2j RNA polymerase II subunit J ENCODES a protein that exhibits LRR domain binding (ortholog); INVOLVED IN transcription by RNA polymerase II (ortholog); transcription elongation by RNA polymerase II (ortholog); transcription initiation at RNA polymerase II promoter (ortholog); PARTICIPATES IN RNA polymerase II transcription pathway; FOUND IN nucleus (ortholog); RNA polymerase II, core complex (ortholog) NW_004955456 15146713 15151320 + 102014745 AGCD01046662;GBDI01007145;XM_005396834 XP_005396891 MODEL 8836577 protein-coding Scly selenocysteine lyase ENCODES a protein that exhibits amino acid binding (ortholog); protein homodimerization activity (ortholog); selenocysteine lyase activity (ortholog); INVOLVED IN lipid metabolic process (ortholog); negative regulation of cellular response to oxidative stress (ortholog); response to insulin (ortholog); PARTICIPATES IN selenoamino acid metabolic pathway; FOUND IN catalytic complex (ortholog); Golgi apparatus (ortholog) NW_004955542 2453826 2472951 - 102027902 AGCD01071522;AGCD01071523;GBBH01065161;XM_005411197;XM_013508017 XP_005411254;XP_013363471 MODEL 39131575 protein-coding TSHZ1 teashirt zinc finger homeobox 1 8816920 pseudo LOC102021531 zinc finger CCHC-type and RNA-binding motif-containing protein 1-like NW_004955460 10685107 10694650 + 102021531 AGCD01048600 MODEL 8965657 pseudo LOC102025357 caspase-3-like NW_004955417 10514744 10515995 + 102025357 AGCD01018075;AGCD01018076 MODEL 9050760 protein-coding LOC102027096 uncharacterized LOC102027096 NW_004955429 22854202 22855215 - 102027096 AGCD01029042;GBCE01059856;XM_005387210 XP_005387267 MODEL 8994669 ncrna LOC102029484 uncharacterized LOC102029484 NW_004955462 10475034 10597102 - 102029484 AGCD01049366;AGCD01049367;AGCD01049368;AGCD01049369;GBCQ01099086;XR_263121 MODEL 8960203 protein-coding Igfbp5 insulin like growth factor binding protein 5 ENCODES a protein that exhibits fibronectin binding (ortholog); insulin-like growth factor binding (ortholog); insulin-like growth factor I binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to cAMP (ortholog); female pregnancy (ortholog); PARTICIPATES IN insulin-like growth factor signaling pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); congenital diaphragmatic hernia (ortholog); Coronary Disease (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); insulin-like growth factor ternary complex (ortholog) NW_004955453 16530110 16550733 + 102021941 AGCD01044905;GBCE01051975;XM_005395681 XP_005395738 MODEL 9025959 protein-coding Spin1 spindlin 1 ENCODES a protein that exhibits histone H3K4me3 reader activity (ortholog); histone reader activity (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); positive regulation of Wnt signaling pathway (ortholog); protein localization to chromatin (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN chromatin (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955515 3470956 3518909 - 102019522 AGCD01067287;AGCD01067288;GBCQ01098007;GBDJ01091296;XM_005408884;XM_013506879 XP_005408941;XP_013362333 MODEL 10139300 ncrna LOC106146355 uncharacterized LOC106146355 NW_004955475 1478263 1479496 + 106146355 AGCD01054753;GBCB01053515;XR_001230758 MODEL 8884023 protein-coding Krt26 keratin 26 NW_004955451 15230834 15236699 - 102018051 AGCD01043602;GBCQ01057548;XM_005394370 XP_005394427 MODEL 8856413 ncrna LOC102020760 uncharacterized LOC102020760 NW_004955407 39791493 39800659 - 102020760 AGCD01007837;GBBH01210358;XR_001231360 MODEL 8792067 protein-coding Yae1 YAE1 maturation factor of ABCE1 INVOLVED IN protein maturation (ortholog) NW_004955460 3900245 3904430 - 102018809 AGCD01048422;GBDF01046538;XM_005397731;XM_005397732;XM_013521094 XP_005397788;XP_005397789;XP_013376548 MODEL 10099496 ncrna LOC106149315 uncharacterized LOC106149315 NW_004955442 7089006 7093438 + 106149315 AGCD01037613;GBDK01386667;XR_001235409 MODEL 39133648 snrna U4 U4 spliceosomal RNA 8733588 protein-coding LOC102010185 olfactory receptor 4D10-like NW_004955511 4000616 4001551 + 102010185 AGCD01066486;XM_005408269 XP_005408326 MODEL 8720362 protein-coding Etfrf1 electron transfer flavoprotein regulatory factor 1 ENCODES a protein that exhibits enzyme inhibitor activity (ortholog); INVOLVED IN negative regulation of oxidative phosphorylation (ortholog); FOUND IN mitochondrion (ortholog) NW_004955413 20287287 20294430 + 102029279 AGCD01014212;GBDF01080150;XM_005379098;XM_013511449 XP_005379155;XP_013366903 MODEL 9038031 protein-coding LOC102004626 olfactory receptor 5B2-like NW_004955511 3096845 3097774 - 102004626 AGCD01066442;XM_013506380 XP_013361834 MODEL 8712674 protein-coding LOC102012144 cytochrome b5 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN response to cadmium ion (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Congenital Methemoglobinemia (ortholog); endometriosis (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955402 57701931 57739163 - 102012144 AGCD01001508;AGCD01001509;GBDK01022341;XM_005373076 XP_005373133 MODEL 8943034 pseudo LOC102019738 60S ribosomal protein L6-like NW_004955439 671623 673110 - 102019738 AGCD01035592 MODEL 8788816 pseudo LOC102026745 cyclin-G1 pseudogene NW_004955475 6552291 6575740 + 102026745 AGCD01054977 MODEL 8994435 protein-coding Sipa1l3 signal induced proliferation associated 1 like 3 INVOLVED IN cytoskeleton organization (ortholog); epithelial cell morphogenesis (ortholog); establishment of epithelial cell polarity (ortholog); ASSOCIATED WITH cataract 45 (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); glutamatergic synapse (ortholog) NW_004955468 1212102 1438527 - 102023344 AGCD01051762;AGCD01051763;AGCD01051764;AGCD01051765;AGCD01051766;AGCD01051767;AGCD01051768;GBDF01067550;XM_005399879;XM_013522426 XP_005399936;XP_013377880 MODEL 10361279 ncrna LOC106146479 uncharacterized LOC106146479 NW_004955406 41043163 41045894 - 106146479 AGCD01006669;XR_001230924 MODEL 8893952 ncrna LOC102018193 uncharacterized LOC102018193 NW_004955492 8662680 8668236 + 102018193 AGCD01060823;GBCB01028339;XR_264060 MODEL 8868273 pseudo LOC102023933 DNA repair protein complementing XP-A cells-like NW_004955424 22539704 22540854 - 102023933 AGCD01024975 MODEL 39133452 snorna SNORD58 Small nucleolar RNA SNORD58 8914360 protein-coding Pkdcc protein kinase domain containing, cytoplasmic ENCODES a protein that exhibits non-membrane spanning protein tyrosine kinase activity (ortholog); protein kinase activity (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN bone mineralization (ortholog); embryonic digestive tract development (ortholog); limb morphogenesis (ortholog); ASSOCIATED WITH genetic disease (ortholog); intrinsic asthma (ortholog); RHIZOMELIC LIMB SHORTENING WITH DYSMORPHIC FEATURES (ortholog); FOUND IN extracellular region (ortholog); Golgi apparatus (ortholog) NW_004955441 9462530 9471446 + 102020720 AGCD01037022;GBCB01022196;GBDJ01006435;XM_005390915 XP_005390972 MODEL 8786088 protein-coding LOC102027750 major urinary protein 5-like NW_004955419 14442366 14447385 + 102027750 AGCD01020021;GBDF01002442;XM_013513295 XP_013368749 MODEL 8877928 protein-coding Bnip2 BCL2 interacting protein 2 INVOLVED IN blastocyst development (ortholog); centrosome cycle (ortholog); positive regulation of MAPK cascade (ortholog); PARTICIPATES IN p38 MAPK signaling pathway; FOUND IN centriole (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955450 15157411 15180069 + 102011383 AGCD01042782;AGCD01042783;GBDF01002691;XM_005393826;XM_005393827 XP_005393883;XP_005393884 MODEL 8824239 protein-coding Tshz2 teashirt zinc finger homeobox 2 INVOLVED IN regulation of gene expression (ortholog); ASSOCIATED WITH COVID-19 (ortholog); syndromic microphthalmia 5 (ortholog) NW_004955445 5571587 5830728 - 102016322 AGCD01039472;AGCD01039473;AGCD01039474;AGCD01039475;GBDF01222748;XM_005392287 XP_005392344 MODEL 10294439 protein-coding LOC106146599 uncharacterized LOC106146599 NW_004955486 4860550 4862170 - 106146599 AGCD01059070;XM_013504150 XP_013359604 MODEL 8801649 pseudo LOC102025686 heat shock cognate 71 kDa protein-like NW_004955481 780643 782784 - 102025686 AGCD01056810;XR_263812 MODEL 10213290 pseudo LOC106148116 proteasome subunit alpha type-6-like NW_004955416 9538628 9541978 + 106148116 AGCD01017089 MODEL 8965225 protein-coding LOC102009024 pentatricopeptide repeat-containing protein 1, mitochondrial NW_004955460 15091557 15111456 - 102009024 AGCD01048768;GBDI01065355;XM_005397942;XM_005397943 XP_005397999;XP_005398000 MODEL 9042278 protein-coding Yaf2 YY1 associated factor 2 ENCODES a protein that exhibits transcription coactivator activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of DNA-templated transcription (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955500 1531884 1626335 - 102029985 AGCD01063657;AGCD01063658;AGCD01063659;AGCD01063660;AGCD01063661;AGCD01063662;AGCD01063663;AGCD01063664;AGCD01063665;AGCD01063666;AGCD01063667;GBBH01107030;XM_005406575;XR_001231508;XR_001231509;XR_001231510;XR_001231511 XP_005406632 MODEL 9021534 protein-coding LOC102024257 olfactory receptor 10AD1-like NW_004955500 7121240 7122420 - 102024257 AGCD01063901;XM_013505634 XP_013361088 MODEL 8992249 ncrna LOC102003275 uncharacterized LOC102003275 NW_004955435 19660196 19672146 - 102003275 AGCD01033436;GBBH01155403;XR_001234913;XR_001234914;XR_001234915 MODEL 8829708 protein-coding Pan2 poly(A) specific ribonuclease subunit PAN2 ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); poly(A)-specific ribonuclease activity (ortholog); INVOLVED IN nuclear-transcribed mRNA poly(A) tail shortening (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); P-body (ortholog) NW_004955458 3925356 3946879 - 102006637 AGCD01047354;AGCD01047355;GBDI01291830;XM_005397303;XM_005397306;XM_013520832;XM_013520833;XM_013520834;XM_013520835;XM_013520836;XM_013520837;XM_013520838;XM_013520839 XP_005397360;XP_005397363;XP_013376286;XP_013376287;XP_013376288;XP_013376289;XP_013376290;XP_013376291;XP_013376292;XP_013376293 MODEL 8707093 ncrna LOC102003597 uncharacterized LOC102003597 NW_004955447 15301309 15312329 + 102003597 AGCD01041045;GBDF01277712;XR_262434 MODEL 9039046 pseudo LOC102012573 40S ribosomal protein S11-like NW_004955526 2916961 2917447 + 102012573 AGCD01069324 MODEL 9000101 protein-coding Tfec transcription factor EC ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to heat (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955432 21751697 21813199 - 102009642 AGCD01031233;AGCD01031234;GBCQ01150400;XM_005388113;XM_005388115;XM_013516081;XM_013516082 XP_005388170;XP_005388172;XP_013371535;XP_013371536 MODEL 8961186 pseudo LOC102006405 lupus La protein homolog pseudogene NW_004955449 5976871 5978023 + 102006405 AGCD01041946 MODEL 8773381 pseudo LOC102030202 serine/threonine-protein kinase Sgk3 pseudogene NW_004955486 9718391 9723635 - 102030202 AGCD01059198 MODEL 8721530 protein-coding LOC102027097 olfactory receptor 5G3-like NW_004955511 1927117 1927701 - 102027097 AGCD01066385;XM_005408249 XP_005408306 MODEL 8908962 protein-coding Ldlrad2 low density lipoprotein receptor class A domain containing 2 NW_004955452 2031868 2057264 + 102011622 AGCD01043873;AGCD01043874;AGCD01043875;AGCD01043876;GBDF01174896;XM_013519453 XP_013374907 MODEL 8981399 pseudo LOC102029485 heterogeneous nuclear ribonucleoprotein A1-like NW_004955410 33929699 33930813 - 102029485 AGCD01011392 MODEL 10094508 ncrna LOC106150134 uncharacterized LOC106150134 NW_004955465 11602487 11607340 + 106150134 AGCD01050530;GBBH01075159;XR_001236762 MODEL 8921275 protein-coding Scmh1 Scm polycomb group protein homolog 1 INVOLVED IN anterior/posterior pattern specification (ortholog); chromatin remodeling (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN chromocenter (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955537 819209 971297 - 102006390 AGCD01070875;AGCD01070876;AGCD01070877;AGCD01070878;AGCD01070879;AGCD01070880;AGCD01070881;XM_005410586;XM_013507788;XM_013507789;XM_013507790;XM_013507791;XM_013507792 XP_005410643;XP_013363242;XP_013363243;XP_013363244;XP_013363245;XP_013363246 MODEL 8860117 protein-coding Slc35e3 solute carrier family 35 member E3 NW_004955458 15216365 15231584 + 102011090 AGCD01047877;AGCD01047878;AGCD01047879;AGCD01047880;GBDF01225604;GBDK01319316;XM_013520900 XP_013376354 MODEL 8860479 pseudo LOC102028434 Bardet-Biedl syndrome 2 protein pseudogene NW_004955423 9747597 9762575 + 102028434 AGCD01023665;AGCD01023666;AGCD01023667 MODEL 8792024 ncrna LOC102015536 uncharacterized LOC102015536 NW_004955494 2042184 2070282 + 102015536 AGCD01061434;GBDF01220369;XR_264105 MODEL 8838849 protein-coding Tnfsf18 TNF superfamily member 18 ENCODES a protein that exhibits identical protein binding (ortholog); tumor necrosis factor receptor superfamily binding (ortholog); INVOLVED IN activated CD4-positive, alpha-beta T cell proliferation (ortholog); negative regulation of T-helper 17 cell lineage commitment (ortholog); positive regulation of cell adhesion (ortholog); FOUND IN cell surface (ortholog) NW_004955406 13391162 13402479 - 102004670 AGCD01005937;XM_005374865 XP_005374922 MODEL 39133650 snrna U4 U4 spliceosomal RNA 10281189 pseudo LOC106147027 PHD finger protein 3 pseudogene NW_004955512 1301287 1303305 - 106147027 AGCD01066638 MODEL 10347018 protein-coding Phgr1 proline, histidine and glycine rich 1 NW_004955416 7277637 7280676 + 106148164 AGCD01016971;GBCQ01018450;XM_013512620 XP_013368074 MODEL 8831292 pseudo LOC102007485 BTB/POZ domain-containing protein 7 pseudogene NW_004955588 764940 776028 - 102007485 AGCD01076122 MODEL 8820372 pseudo LOC102010186 disks large-associated protein 5 pseudogene NW_004955430 21698565 21699103 + 102010186 AGCD01029774 MODEL 9050556 protein-coding Ethe1 ETHE1 persulfide dioxygenase ENCODES a protein that exhibits identical protein binding (ortholog); iron ion binding (ortholog); sulfur dioxygenase activity (ortholog); INVOLVED IN glutathione metabolic process (ortholog); sulfide oxidation (ortholog); ASSOCIATED WITH ethylmalonic encephalopathy (ortholog); genetic disease (ortholog); Nervous System Malformations (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955555 1262860 1279714 - 102016105 AGCD01073068;AGCD01073069;GBDJ01127270;XM_005412440 XP_005412497 MODEL 8722765 pseudo LOC102015537 polyadenylate-binding protein 4 pseudogene NW_004955422 14754359 14755652 + 102015537 AGCD01022864 MODEL 8794771 protein-coding Polr2k RNA polymerase II, I and III subunit K INVOLVED IN termination of RNA polymerase III transcription (ortholog); transcription by RNA polymerase II (ortholog); transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription pathway; RNA polymerase III transcription pathway; FOUND IN fibrillar center (ortholog); nucleus (ortholog); RNA polymerase I complex (ortholog) NW_004955417 15412527 15416090 + 102015404 AGCD01018232;GBDF01122589;XM_005381864 XP_005381921 MODEL 8897814 protein-coding Srrm1 serine and arginine repetitive matrix 1 PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH gestational diabetes (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); nuclear matrix (ortholog); nuclear speck (ortholog) NW_004955452 4401089 4433986 + 102003721 AGCD01043981;GBDF01081884;XM_005394812;XM_005394813;XM_005394815;XM_005394816;XM_013519673 XP_005394869;XP_005394870;XP_005394872;XP_005394873;XP_013375127 MODEL 8954792 ncrna LOC102021532 uncharacterized LOC102021532 NW_004955410 9692203 9701655 + 102021532 AGCD01010773;GBDF01305484;XR_259828 MODEL 10307973 ncrna LOC106146744 uncharacterized LOC106146744 NW_004955494 7357826 7367668 - 106146744 AGCD01061551;GBBH01126967;XR_001231310 MODEL 8700555 protein-coding LOC102012146 3-alpha-hydroxysteroid sulfotransferase-like NW_004955609 372015 408109 - 102012146 AGCD01077059;AGCD01077060;GBDI01156067;XM_005414932 XP_005414989 MODEL 8809497 protein-coding LOC102025359 C-C motif chemokine 3 NW_004955481 10400276 10402146 - 102025359 AGCD01057146;GBDK01021644;XM_005402905 XP_005402962 MODEL 8971322 protein-coding Necap2 NECAP endocytosis associated 2 ASSOCIATED WITH prostate cancer (ortholog); FOUND IN clathrin vesicle coat (ortholog) NW_004955527 1885708 1900424 - 102026668 AGCD01069419;AGCD01069420;GBDI01176012;XM_005409827 XP_005409884 MODEL 8737255 protein-coding Igfbp6 insulin like growth factor binding protein 6 ENCODES a protein that exhibits identical protein binding (ortholog); insulin-like growth factor I binding (ortholog); insulin-like growth factor II binding (ortholog); INVOLVED IN cell migration (ortholog); positive regulation of MAPK cascade (ortholog); positive regulation of stress-activated MAPK cascade (ortholog); PARTICIPATES IN insulin-like growth factor signaling pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); contact dermatitis (ortholog); endometriosis (ortholog); FOUND IN extracellular region (ortholog); insulin-like growth factor binary complex (ortholog) NW_004955458 377929 382109 + 102011740 AGCD01047122;GBDJ01023220;XM_005397143 XP_005397200 MODEL 8957456 pseudo LOC102018614 olfactory receptor 7E24-like NW_004955495 629283 630229 - 102018614 AGCD01061645 MODEL 10376196 ncrna LOC106149316 uncharacterized LOC106149316 NW_004955442 10982954 10985899 - 106149316 AGCD01037714;GBDF01089387;XR_001235412 MODEL 8886932 protein-coding Krt27 keratin 27 INVOLVED IN hair follicle morphogenesis (ortholog) NW_004955451 15242355 15246979 - 102017733 AGCD01043602;GBCB01120207;XM_005394369 XP_005394426 MODEL 10285575 ncrna LOC106150135 uncharacterized LOC106150135 NW_004955465 7201865 7211516 - 106150135 AGCD01050457;GBDF01262745;XR_001236764 MODEL 8794617 protein-coding LOC102006031 zinc finger protein 14-like NW_004955417 31556784 31573000 - 102006031 AGCD01018655;AGCD01018656;GBDJ01003802;XM_013512775 XP_013368229 MODEL 9023503 protein-coding Pkdrej polycystin family receptor for egg jelly INVOLVED IN regulation of acrosome reaction (ortholog); FOUND IN nucleus (ortholog); plasma membrane (ortholog) NW_004955413 30377627 30384749 - 102009824 AGCD01014608;GBDF01003380;XM_005379503;XM_005379505;XM_005379506 XP_005379560;XP_005379562;XP_005379563 MODEL 9059933 protein-coding Tshz3 teashirt zinc finger homeobox 3 ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN in utero embryonic development (ortholog); kidney morphogenesis (ortholog); kidney smooth muscle cell differentiation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); congenital anomalies of kidney and urinary tract (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN growth cone (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955468 6448167 6669706 + 102006647 AGCD01051985;AGCD01051986;AGCD01051987;AGCD01051988;GBDJ01311365;XM_005400095;XR_263394 XP_005400152 MODEL 10176929 protein-coding LOC106148117 uncharacterized LOC106148117 NW_004955416 14464827 14471521 - 106148117 AGCD01017270;GBDI01236886;XM_013512421 XP_013367875 MODEL 9040719 pseudo LOC102026753 centrin-2-like NW_004955420 17245627 17271574 - 102026753 AGCD01021020;AGCD01021021 MODEL 9058986 protein-coding Siral1 SIR2 antiphage like 1 ENCODES a protein that exhibits identical protein binding (ortholog) NW_004955412 27239420 27287097 + 102029063 AGCD01013232;AGCD01013233;GBDK01318709;XM_005378495;XM_013511028;XM_013511029 XP_005378552;XP_013366482;XP_013366483 MODEL 9019508 pseudo LOC102018199 cyclin-G1 pseudogene NW_004955425 7631390 7649613 + 102018199 AGCD01025391 MODEL 8827324 protein-coding Tff1 trefoil factor 1 INVOLVED IN cell differentiation (ortholog); maintenance of gastrointestinal epithelium (ortholog); negative regulation of cell population proliferation (ortholog); PARTICIPATES IN forkhead class A signaling pathway; ASSOCIATED WITH Achlorhydria (ortholog); Acute Lung Injury (ortholog); Breast Neoplasms (ortholog); FOUND IN extracellular region (ortholog) NW_004955407 39363693 39365724 + 102014322 AGCD01007824;XM_005375829;XM_013506349 XP_005375886;XP_013361803 MODEL 8896051 protein-coding Etnk1 ethanolamine kinase 1 ENCODES a protein that exhibits ethanolamine kinase activity (ortholog); INVOLVED IN phosphatidylethanolamine biosynthetic process (ortholog); ASSOCIATED WITH systemic juvenile rheumatoid arthritis (ortholog); teratoma (ortholog); FOUND IN cytoplasm (ortholog) NW_004955413 18036646 18094875 + 102024781 AGCD01014167;GBDF01044052;XM_005379081 XP_005379138 MODEL 8916232 protein-coding Pan3 poly(A) specific ribonuclease subunit PAN3 ENCODES a protein that exhibits poly(A)-specific ribonuclease activity (ortholog); INVOLVED IN deadenylation-dependent decapping of nuclear-transcribed mRNA (ortholog); nuclear-transcribed mRNA poly(A) tail shortening (ortholog); positive regulation of cytoplasmic mRNA processing body assembly (ortholog); PARTICIPATES IN microRNA pathway; FOUND IN cytoplasm (ortholog); nucleus (ortholog); P-body (ortholog) NW_004955497 7500478 7646541 + 102017035 AGCD01062678;AGCD01062679;AGCD01062680;AGCD01062681;GBDF01007425;GBDI01016760;XM_013505498 XP_013360952 MODEL 8967142 protein-coding Spin4 spindlin family member 4 ENCODES a protein that exhibits histone H3K4me3 reader activity (ortholog); INVOLVED IN negative regulation of cell population proliferation (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH Lui-Jee-Baron syndrome (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955475 3967813 3971725 - 102030189 AGCD01054863;XM_005401549 XP_005401606 MODEL 9013605 ncrna LOC102021533 uncharacterized LOC102021533 NW_004955410 19329312 19334964 - 102021533 AGCD01011019;GBDK01421036;XR_259850 MODEL 8858677 ncrna LOC102012147 uncharacterized LOC102012147 NW_004955652 44834 52840 - 102012147 AGCD01077823;AGCD01077824;GBBH01127077;XR_265180 MODEL 8970578 pseudo LOC102027751 spindle and kinetochore-associated protein 2-like NW_004955420 18870598 18871038 + 102027751 AGCD01021051 MODEL 10156513 ncrna LOC106146600 uncharacterized LOC106146600 NW_004955486 9286409 9289487 + 106146600 AGCD01059173;GBCE01062372;XR_001231102 MODEL 8731175 protein-coding Bnip3 BCL2 interacting protein 3 ENCODES a protein that exhibits endoplasmic reticulum-autophagosome adaptor activity (ortholog); GTPase binding (ortholog); identical protein binding (ortholog); INVOLVED IN autophagic cell death (ortholog); brown fat cell differentiation (ortholog); cardiac muscle cell apoptotic process (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; intrinsic apoptotic pathway; mitochondrial autophagy pathway; ASSOCIATED WITH Chronic Intermittent Hypoxia (ortholog); chronic obstructive pulmonary disease (ortholog); congestive heart failure (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955477 9621812 9630406 - 102022813 AGCD01055677;GBCQ01005103;GBDI01001865;XM_005402035 XP_005402092 MODEL 39133651 snrna U4 U4 spliceosomal RNA 8903197 pseudo LOC102025689 protein boule-like pseudogene NW_004955484 9305830 9306743 - 102025689 AGCD01058414 MODEL 9032245 protein-coding LOC102009028 uncharacterized LOC102009028 NW_004955411 2334442 2389596 - 102009028 AGCD01011505;AGCD01011506;XM_013510712 XP_013366166 MODEL 8993656 ncrna LOC102019739 uncharacterized LOC102019739 NW_004955545 2273149 2281175 - 102019739 AGCD01071893;AGCD01071894;GBDK01416812;XR_264874 MODEL 8809574 protein-coding LOC102028436 melanoma-associated antigen 10-like NW_004955498 7586736 7588248 - 102028436 AGCD01063151;GBDF01113056;XM_005406495 XP_005406552 MODEL 8840724 protein-coding Yap1 Yes1 associated transcriptional regulator ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); proline-rich region binding (ortholog); INVOLVED IN bud elongation involved in lung branching (ortholog); cardiac muscle tissue regeneration (ortholog); cell morphogenesis (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Brain Neoplasms (ortholog); Breast Neoplasms (ortholog); coloboma (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955412 5423866 5533728 + 102010882 AGCD01012633;AGCD01012634;GBBH01090880;GBDF01046541;XM_013511126 XP_013366580 MODEL 10305245 ncrna LOC106146480 uncharacterized LOC106146480 NW_004955406 7333563 7335201 + 106146480 AGCD01005769;XR_001230925 MODEL 9054941 pseudo LOC102007487 uncharacterized LOC102007487 NW_004955402 44529952 44533463 + 102007487 AGCD01001118 MODEL 8741846 ncrna LOC102023935 uncharacterized LOC102023935 NW_004955502 469240 476212 + 102023935 AGCD01064242;GBDK01349222;XR_001231529 MODEL 8914578 protein-coding Phip pleckstrin homology domain interacting protein ENCODES a protein that exhibits histone reader activity (ortholog); INVOLVED IN insulin receptor signaling pathway (ortholog); negative regulation of apoptotic process (ortholog); negative regulation of extrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); DEVELOPMENTAL DELAY, INTELLECTUAL DISABILITY, OBESITY, AND DYSMORPHIC FEATURES (ortholog); Developmental Disease (ortholog); FOUND IN nucleus (ortholog) NW_004955502 6842149 6951791 - 102005615 AGCD01064422;AGCD01064423;AGCD01064424;AGCD01064425;AGCD01064426;GBDK01145970;XM_013505816 XP_013361270 MODEL 10256792 protein-coding Polr2l RNA polymerase II, I and III subunit L ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN termination of RNA polymerase III transcription (ortholog); transcription by RNA polymerase II (ortholog); transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription pathway; RNA polymerase III transcription pathway; FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase I complex (ortholog) NW_004955476 11291215 11293536 + 106146378 AGCD01055447;AY533215;GBDI01017433;XM_013502959 AAS59418;Q6QN04;XP_013358413 MODEL 39133451 snorna SNORD58 Small nucleolar RNA SNORD58 8811003 protein-coding Siral2 SIR2 antiphage like 2 ENCODES a protein that exhibits identical protein binding (ortholog) NW_004955413 29685697 29707860 + 102003643 AGCD01014592;GBDF01193282;GBDJ01075980;XM_013511625;XM_013511626 XP_013367079;XP_013367080 MODEL 9063062 protein-coding Srrm2 serine/arginine repetitive matrix 2 ENCODES a protein that exhibits C2H2 zinc finger domain binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autosomal dominant intellectual developmental disorder 72 (ortholog); genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN Cajal body (ortholog); catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog) NW_004955442 14478350 14498152 + 102014293 AGCD01037821;GBBH01000548;XM_005391396;XM_005391398;XM_013517820;XM_013517821;XM_013517822 XP_005391453;XP_005391455;XP_013373274;XP_013373275;XP_013373276 MODEL 8708823 pseudo LOC102025361 coiled-coil domain-containing protein 152 pseudogene NW_004955418 6274363 6275849 + 102025361 AGCD01018870;AGCD01018871 MODEL 8796694 protein-coding LOC102009384 galectin-5-like NW_004955481 5414837 5422402 - 102009384 AGCD01056977;GBBH01036969;XM_013503347 XP_013358801 MODEL 8918902 protein-coding Ldlrad3 low density lipoprotein receptor class A domain containing 3 ENCODES a protein that exhibits amyloid-beta binding (ortholog); INVOLVED IN receptor-mediated endocytosis (ortholog); regulation of protein processing (ortholog); ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog) NW_004955422 10206498 10382573 - 102009729 AGCD01022733;AGCD01022734;AGCD01022735;GBDJ01214063;XM_013513831 XP_013369285 MODEL 8922294 protein-coding Tff2 trefoil factor 2 ENCODES a protein that exhibits CXCR4 chemokine receptor binding (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); chemokine-mediated signaling pathway (ortholog); negative regulation of gastric acid secretion (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); Helicobacter Infections (ortholog); Hookworm Infections (ortholog); FOUND IN extracellular region (ortholog) NW_004955407 39379669 39382367 + 102014980 AGCD01007825;GBDI01010717;XM_005375830 XP_005375887 MODEL 10145272 ncrna LOC106149317 uncharacterized LOC106149317 NW_004955442 18223086 18223967 - 106149317 AGCD01038001;GBDF01042119;XR_001235413 MODEL 9061438 protein-coding Nectin1 nectin cell adhesion molecule 1 ENCODES a protein that exhibits carbohydrate binding (ortholog); cell adhesion mediator activity (ortholog); cell adhesion molecule binding (ortholog); INVOLVED IN axon guidance (ortholog); camera-type eye morphogenesis (ortholog); cell-cell adhesion (ortholog); ASSOCIATED WITH cleft lip (ortholog); cleft lip-palate-ectodermal dysplasia syndrome (ortholog); cleft palate (ortholog); FOUND IN adherens junction (ortholog); apical junction complex (ortholog); axon (ortholog) NW_004955412 20683007 20745069 - 102009814 AGCD01013012;GBDI01327713;XM_005378343 XP_005378400 MODEL 10188288 ncrna LOC106147028 uncharacterized LOC106147028 NW_004955512 2019604 2023079 - 106147028 AGCD01066665;GBCE01041324;XR_001231726 MODEL 8971229 protein-coding LOC102024261 olfactory receptor 1052-like NW_004955511 2737665 2739242 - 102024261 AGCD01066427;GBDF01076871;XM_005408019 XP_005408076 MODEL 10292752 ncrna LOC106150136 uncharacterized LOC106150136 NW_004955465 7001538 7077795 + 106150136 AGCD01050449;AGCD01050450;AGCD01050451;AGCD01050452;XR_001236765 MODEL 8940666 pseudo LOC102003598 SRSF protein kinase 1 pseudogene NW_004955447 5510865 5512873 + 102003598 AGCD01040759 MODEL 10332466 pseudo LOC106148118 60S ribosomal protein L39 pseudogene NW_004955416 20551216 20551421 - 106148118 AGCD01017456 MODEL 8792457 ncrna LOC102012575 uncharacterized LOC102012575 NW_004955437 2310695 2312191 + 102012575 AGCD01034263;XR_261833 MODEL 8994863 pseudo LOC102006407 28S ribosomal protein S36, mitochondrial pseudogene NW_004955402 32490863 32492527 - 102006407 AGCD01000824 MODEL 8802539 pseudo LOC102027098 histone RNA hairpin-binding protein-like NW_004955430 1229571 1244381 + 102027098 AGCD01029118 MODEL 8864798 protein-coding LOC102009030 olfactory receptor 8B12-like NW_004955412 25540272 25542114 - 102009030 AGCD01013160;GBDI01315433;XM_005378423 XP_005378480 MODEL 8983562 protein-coding LOC102029490 olfactory receptor 10G6 NW_004955412 24633743 24634705 - 102029490 AGCD01013118;XM_005378406 XP_005378463 MODEL 8969200 protein-coding Scml1 Scm polycomb group protein like 1 FOUND IN nucleus (ortholog) NW_004955519 578343 591299 - 102003576 AGCD01067878;GBDJ01403258;XM_013507015 XP_013362469 MODEL 8715297 pseudo LOC102004631 quinone oxidoreductase-like protein 2 NW_004955432 19214738 19226859 - 102004631 AGCD01031171;AGCD01031172;AGCD01031173;AGCD01031174 MODEL 8880676 protein-coding Pank1 pantothenate kinase 1 ENCODES a protein that exhibits acetyl-CoA binding (ortholog); pantothenate kinase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN coenzyme A biosynthetic process (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH Nerve Degeneration (ortholog); FOUND IN catalytic complex (ortholog); cell periphery (ortholog); clathrin coat (ortholog) NW_004955425 3384023 3433808 + 102015421 AGCD01025289;GBBH01193123;XM_005385848 XP_005385905 MODEL 8968487 protein-coding Slc35e4 solute carrier family 35 member E4 NW_004955455 4853632 4863617 + 102025539 AGCD01045696;GBCQ01129341;XM_005396278 XP_005396335 MODEL 8994314 pseudo LOC102018615 BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 pseudogene NW_004955423 116522 118457 + 102018615 AGCD01023410 MODEL 9017060 protein-coding Tnfsf4 TNF superfamily member 4 ENCODES a protein that exhibits receptor ligand activity (ortholog); tumor necrosis factor receptor binding (ortholog); tumor necrosis factor receptor superfamily binding (ortholog); INVOLVED IN acute inflammatory response (ortholog); CD4-positive, alpha-beta T cell costimulation (ortholog); cellular response to lipopolysaccharide (ortholog); ASSOCIATED WITH cervical squamous cell carcinoma (ortholog); dilated cardiomyopathy (ortholog); leishmaniasis (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog) NW_004955406 13477077 13493309 - 102005005 AGCD01005938;XM_005374866 XP_005374923 MODEL 8916034 pseudo LOC102010187 glycerol-3-phosphate acyltransferase 3 pseudogene NW_004955512 1355820 1356600 + 102010187 AGCD01066640 MODEL 8872212 protein-coding LOC102015541 olfactory receptor 7C2-like NW_004955495 8384024 8384983 - 102015541 AGCD01062204;XM_005406106 XP_005406163 MODEL 39133652 snrna U4 U4 spliceosomal RNA 8985207 protein-coding Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin INVOLVED IN branching morphogenesis of an epithelial tube (ortholog); cell-cell junction organization (ortholog); cilium assembly (ortholog); ASSOCIATED WITH autosomal dominant polycystic kidney disease (ortholog); autosomal recessive polycystic kidney disease (ortholog); Caroli disease (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); apical plasma membrane (ortholog); centrosome (ortholog) NW_004955411 5988100 6434369 + 102003100 AGCD01011668;AGCD01011669;AGCD01011670;AGCD01011671;AGCD01011672;AGCD01011673;AGCD01011674;AGCD01011675;AGCD01011676;AGCD01011677;AGCD01011678;AGCD01011679;AGCD01011680;AGCD01011681;GBCQ01098601;GBCQ01098620;XM_013510899 XP_013366353 MODEL 9058243 ncrna LOC102026757 uncharacterized LOC102026757 NW_004955492 5116831 5128742 + 102026757 AGCD01060739;GBCB01086445;XR_264051 MODEL 8785512 protein-coding Bnip3l BCL2 interacting protein 3 like ENCODES a protein that exhibits identical protein binding (ortholog); lamin binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); defense response to virus (ortholog); mitochondrial protein catabolic process (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; mitochondrial autophagy pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Cerebral Hemorrhage (ortholog); Chronic Cerebral Hypoperfusion (ortholog); FOUND IN endoplasmic reticulum (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955403 49122408 49144162 + 102027479 AGCD01002935;GBDF01047886;XM_005373726 XP_005373783 MODEL 9060578 ncrna LOC102030210 uncharacterized LOC102030210 NW_004955423 26089173 26105965 + 102030210 AGCD01024091;GBDJ01065090;XR_001234077;XR_260999 MODEL 9031877 pseudo LOC102018200 60S ribosomal protein L9-like NW_004955501 4266517 4318674 - 102018200 AGCD01064120;AGCD01064121;AGCD01064122;AGCD01064123;AGCD01064124 MODEL 10300365 protein-coding LOC106148119 uncharacterized LOC106148119 NW_004955416 23133541 23168478 - 106148119 AGCD01017544;GBDK01253652;XM_013512425 XP_013367879 MODEL 10225351 ncrna LOC106146356 uncharacterized LOC106146356 NW_004955475 11635372 11643437 - 106146356 AGCD01055162;GBDI01167819;XR_001230759 MODEL 8762028 protein-coding LOC102007488 vomeronasal type-1 receptor 2-like NW_004955603 278326 279225 + 102007488 AGCD01076825;XM_005414837 XP_005414894 MODEL 8975644 pseudo LOC102021534 protein archease pseudogene NW_004955463 5982003 5982507 - 102021534 AGCD01049652 MODEL 39133450 snorna SNORD58 Small nucleolar RNA SNORD58 8810315 protein-coding Yars1 tyrosyl-tRNA synthetase 1 ENCODES a protein that exhibits small molecule binding (ortholog); tyrosine-tRNA ligase activity (ortholog); INVOLVED IN response to starvation (ortholog); tyrosyl-tRNA aminoacylation (ortholog); PARTICIPATES IN phenylketonuria pathway; tyrosinemia type II pathway; tyrosinemia type III pathway; ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease dominant intermediate C (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955452 11046047 11078016 - 102029820 AGCD01044322;AGCD01044323;GBDF01118229;XM_005395094 XP_005395151 MODEL 8990220 protein-coding Polr2m RNA polymerase II subunit M ENCODES a protein that exhibits RNA polymerase II complex binding (ortholog); INVOLVED IN maintenance of ER location (ortholog); transcription elongation by RNA polymerase II (ortholog); transcription initiation at RNA polymerase II promoter (ortholog); FOUND IN neuronal cell body (ortholog); nuclear envelope (ortholog); nucleus (ortholog) NW_004955450 16633975 16642085 - 102018875 AGCD01042847;AGCD01042848;GBDI01062092;XM_005393846 XP_005393903 MODEL 8928438 protein-coding Igfbp7 insulin like growth factor binding protein 7 ENCODES a protein that exhibits receptor ligand activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell adhesion (ortholog); cellular response to hormone stimulus (ortholog); ASSOCIATED WITH breast cancer (ortholog); Breast Neoplasms (ortholog); Burns (ortholog); FOUND IN extracellular region (ortholog) NW_004955447 14048834 14110264 + 102005194 AGCD01040979;GBCB01003373;GBDK01007633;XM_013518518 XP_013373972 MODEL 8790446 protein-coding Krt3 keratin 3 INVOLVED IN intermediate filament cytoskeleton organization (ortholog); ASSOCIATED WITH Meesmann corneal dystrophy 2 (ortholog); polycystic ovary syndrome (ortholog) NW_004955458 92436 98334 - 102007632 AGCD01047106;GBDK01391325;XM_005397128 XP_005397185 MODEL 8804781 ncrna LOC102003276 uncharacterized LOC102003276 NW_004955528 1806550 1808282 + 102003276 AGCD01069571;AGCD01069572;XR_001231991 MODEL 8988756 pseudo LOC102027754 oxysterol-binding protein-related protein 9 pseudogene NW_004955421 3266537 3267717 + 102027754 AGCD01021650 MODEL 10328894 ncrna LOC106146601 uncharacterized LOC106146601 NW_004955486 3720971 3725440 + 106146601 AGCD01059036;XR_001231103 MODEL 9039089 protein-coding Srrm3 serine/arginine repetitive matrix 3 INVOLVED IN negative regulation of glucagon secretion (ortholog); negative regulation of insulin secretion (ortholog); RNA splicing (ortholog) NW_004955456 14855387 14914315 + 102014214 AGCD01046654;AGCD01046655;AGCD01046656;GBDF01195367;XM_005396897 XP_005396954 MODEL 8906025 ncrna LOC102020761 uncharacterized LOC102020761 NW_004955456 13807823 13809621 + 102020761 AGCD01046623;GBBH01012197;XR_262897 MODEL 9004868 protein-coding Tff3 trefoil factor 3 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN regulation of glucose metabolic process (ortholog); response to peptide hormone (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; interleukin-4 signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Animal Hepatitis (ortholog); colon cancer (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); secretory granule (ortholog) NW_004955407 39398534 39401085 + 102015285 AGCD01007825;GBDF01114936;XM_005375831 XP_005375888 MODEL 8933342 pseudo LOC102019740 mediator of RNA polymerase II transcription subunit 28 pseudogene NW_004955547 1567815 1568355 - 102019740 AGCD01072233 MODEL 8834295 protein-coding LOC102006032 ankyrin repeat and KH domain-containing protein 1 NW_004955418 134451 259259 - 102006032 AGCD01018668;AGCD01018669;AGCD01018670;GBDI01137461;XM_005382032;XM_005382034;XM_005382037;XM_013512890;XM_013512892;XM_013512893;XM_013512894;XM_013512895;XM_013512896;XM_013512897 XP_005382089;XP_005382091;XP_005382094;XP_013368344;XP_013368346;XP_013368347;XP_013368348;XP_013368349;XP_013368350;XP_013368351 MODEL 9067233 pseudo LOC102028438 transmembrane emp24 domain-containing protein 10 pseudogene NW_004955425 5274928 5275671 - 102028438 AGCD01025338;XR_261126 MODEL 9050102 pseudo LOC102025694 39S ribosomal protein L39, mitochondrial pseudogene NW_004955490 4166410 4167649 - 102025694 AGCD01060183 MODEL 8797986 protein-coding LOC102024264 olfactory receptor 4C15-like NW_004955511 221759 222697 + 102024264 AGCD01066325;XM_013506519 XP_013361973 MODEL 8972021 pseudo LOC102023937 melanoma inhibitory activity protein 3-like NW_004955427 21263088 21265995 - 102023937 AGCD01027439 MODEL 8757427 ncrna LOC102012577 uncharacterized LOC102012577 NW_004955437 7996387 8008061 - 102012577 AGCD01034476;GBDF01158367;XR_261866 MODEL 8734398 protein-coding Etnk2 ethanolamine kinase 2 ENCODES a protein that exhibits choline kinase activity (ortholog); ethanolamine kinase activity (ortholog); INVOLVED IN in utero embryonic development (ortholog); multicellular organism growth (ortholog); phosphatidylethanolamine biosynthetic process (ortholog) NW_004955406 39996850 40013753 - 102017842 AGCD01006650;GBDK01051887;XM_005375285 XP_005375342 MODEL 8920015 protein-coding Pkhd1l1 PKHD1 like 1 INVOLVED IN sensory perception of sound (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 124 (ortholog); FOUND IN stereocilium coat (ortholog); stereocilium tip (ortholog) NW_004955417 16776674 16923058 + 102023805 AGCD01018273;AGCD01018274;AGCD01018275;AGCD01018276;AGCD01018277;GBCE01024956;XM_005381882;XM_013512746 XP_005381939;XP_013368200 MODEL 8861227 pseudo LOC102025363 uracil-DNA glycosylase pseudogene NW_004955484 7703130 7704292 - 102025363 AGCD01058343;AGCD01058344 MODEL 39133455 snorna SNORD58 Small nucleolar RNA SNORD58 9000576 protein-coding LOC102029493 C-type lectin domain family 4 member A-like NW_004955413 6805880 6831806 + 102029493 AGCD01013779;AGCD01013780;GBDK01280778;XM_005378917 XP_005378974 MODEL 8744440 pseudo LOC102018617 phylloquinone omega-hydroxylase CYP4F2-like NW_004955495 7595180 7606574 - 102018617 AGCD01062154 MODEL 8971448 protein-coding Tsks testis specific serine kinase substrate ENCODES a protein that exhibits protein kinase binding (ortholog); ASSOCIATED WITH myoepithelioma (ortholog); FOUND IN centriole (ortholog) NW_004955559 1151247 1162856 + 102004756 AGCD01073632;GBCE01108010;XM_005412834;XM_005412835;XM_005412836;XM_005412837;XM_005412838;XM_005412839;XM_005412840;XM_005412841;XM_005412843;XM_005412845 XP_005412891;XP_005412892;XP_005412893;XP_005412894;XP_005412895;XP_005412896;XP_005412897;XP_005412898;XP_005412900;XP_005412902 MODEL 10274396 ncrna LOC106147029 uncharacterized LOC106147029 NW_004955512 1991642 2019576 - 106147029 AGCD01066662;AGCD01066663;AGCD01066664;AGCD01066665;GBDK01251512;XR_001231727 MODEL 10113387 protein-coding LOC106146745 ubinuclein-2-like NW_004955494 3834755 3836337 - 106146745 AGCD01061485;GBCE01154368;GBDF01073986;XM_013504950 XP_013360404 MODEL 8966528 ncrna LOC102010190 uncharacterized LOC102010190 NW_004955520 1134654 1136351 + 102010190 AGCD01068044;GBCQ01105007;XR_001231874;XR_264583 MODEL 8861275 pseudo LOC102003599 ubiquitin-like protein ATG12 pseudogene NW_004955448 10940263 10942006 + 102003599 AGCD01041506 MODEL 10376594 ncrna LOC106146481 uncharacterized LOC106146481 NW_004955481 1678524 1681221 - 106146481 AGCD01056841;GBDF01288445;XR_001230926 MODEL 10337110 ncrna LOC106150137 uncharacterized LOC106150137 NW_004955465 3881818 3882578 - 106150137 AGCD01050394;GBDJ01384243;XR_001236766 MODEL 9014082 protein-coding Spindoc spindlin interactor and repressor of chromatin binding INVOLVED IN DNA damage response (ortholog); negative regulation of DNA-templated transcription (ortholog); FOUND IN chromosome (ortholog); nucleus (ortholog); site of DNA damage (ortholog) NW_004955422 21190135 21198182 - 102022614 AGCD01023104;GBCQ01124597;GBDI01176756;XM_013514066;XM_013514067;XM_013514068 XP_013369520;XP_013369521;XP_013369522 MODEL 8843694 pseudo LOC102006412 uncharacterized LOC102006412 NW_004955450 9656148 9662906 + 102006412 AGCD01042594 MODEL 8825850 protein-coding Phka1 phosphorylase kinase regulatory subunit alpha 1 INVOLVED IN glycogen catabolic process (ortholog); positive regulation of glycogen catabolic process (ortholog); protein autophosphorylation (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); glycogen storage disease (ortholog); FOUND IN phosphorylase kinase complex (ortholog) NW_004955475 12020278 12172427 - 102014774 AGCD01055177;AGCD01055178;AGCD01055179;AGCD01055180;AGCD01055181;AGCD01055182;AGCD01055183;GBCB01004235;XM_005401691;XM_005401692;XM_005401695;XM_005401696;XM_013502821 XP_005401748;XP_005401749;XP_005401752;XP_005401753;XP_013358275 MODEL 9012459 protein-coding Bnip5 BCL2 interacting protein 5 ASSOCIATED WITH prostate cancer (ortholog) NW_004955437 4049113 4067150 - 102009216 AGCD01034359;GBCQ01139589;XM_005389589;XM_005389590;XM_005389591 XP_005389646;XP_005389647;XP_005389648 MODEL 8972326 pseudo LOC102012149 high mobility group protein B1-like NW_004958114 9 505 + 102012149 AGCD01081510 MODEL 8713993 protein-coding LOC102009385 olfactory receptor 2T27-like NW_004955418 29991095 30001887 - 102009385 AGCD01019496;XM_005382363 XP_005382420 MODEL 9031301 pseudo LOC102018201 heat shock factor-binding protein 1 pseudogene NW_004955426 14759883 14760171 + 102018201 AGCD01026402;XM_005386144 MODEL 10320705 pseudo LOC106148120 uncharacterized LOC106148120 NW_004955416 25176570 25180836 + 106148120 AGCD01017584 MODEL 8816187 protein-coding Scml2 Scm polycomb group protein like 2 INVOLVED IN anatomical structure morphogenesis (ortholog); apoptotic process (ortholog); intracellular protein localization (ortholog); ASSOCIATED WITH medulloblastoma (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog); PcG protein complex (ortholog) NW_004955519 16839 84226 + 102029780 AGCD01067854;GBDF01157400;XM_005409124;XM_005409125 XP_005409181;XP_005409182 MODEL 8861575 pseudo LOC102012580 SPRY domain-containing protein 4 pseudogene NW_004955538 3531985 3536331 - 102012580 AGCD01071169 MODEL 10251160 ncrna LOC106149318 uncharacterized LOC106149318 NW_004955442 7314346 7319407 + 106149318 AGCD01037623;XR_001235415 MODEL 8957038 protein-coding Pank2 pantothenate kinase 2 ENCODES a protein that exhibits pantothenate kinase activity (ortholog); INVOLVED IN aerobic respiration (ortholog); angiogenesis (ortholog); coenzyme A biosynthetic process (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); dystonia (ortholog); fundus dystrophy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial intermembrane space (ortholog) NW_004955415 14722951 14752493 + 102003018 AGCD01016308;AGCD01016309;GBDF01118901;XM_005380804;XM_013512190 XP_005380861;XP_013367644 MODEL 8720369 ncrna LOC102003284 uncharacterized LOC102003284 NW_004955438 10342037 10345901 + 102003284 AGCD01035203;GBDF01305498;XR_261924 MODEL 8869393 protein-coding Tnfsf8 TNF superfamily member 8 INVOLVED IN CD8-positive, alpha-beta T cell differentiation (ortholog); defense response to Gram-positive bacterium (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adult T-cell leukemia/lymphoma (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog) NW_004955419 12763343 12790044 + 102006461 AGCD01019984;GBDF01227732;XM_005382620 XP_005382677 MODEL 8914727 protein-coding Slc35f1 solute carrier family 35 member F1 ASSOCIATED WITH atrial fibrillation (ortholog); intellectual disability (ortholog); nephrotic syndrome (ortholog); FOUND IN synaptic vesicle membrane (ortholog) NW_004955436 1096156 1312183 + 102008885 AGCD01033569;AGCD01033570;AGCD01033571;AGCD01033572;AGCD01033573;AGCD01033574;AGCD01033575;GBDF01183323;XM_005389123 XP_005389180 MODEL 39133653 snrna U4 U4 spliceosomal RNA 8849982 ncrna LOC102015542 uncharacterized LOC102015542 NW_004955497 2576338 2582975 - 102015542 AGCD01062511;GBDF01160791;XR_001231429 MODEL 8768005 pseudo LOC102020762 polyadenylate-binding protein-interacting protein 1-like NW_004955407 39022901 39024014 - 102020762 AGCD01007820 MODEL 8809531 protein-coding LOC102026758 uncharacterized LOC102026758 NW_004955493 3127180 3133901 - 102026758 AGCD01060979;GBDF01308386;XM_005405112;XM_005405113;XR_001231273;XR_264078;XR_264079 XP_005405169;XP_005405170 MODEL 8938044 ncrna LOC102006033 uncharacterized LOC102006033 NW_004955481 9531180 9539647 + 102006033 AGCD01057102;GBDF01031476;XR_263796 MODEL 8819136 ncrna LOC102027099 uncharacterized LOC102027099 NW_004955431 3082267 3095252 - 102027099 AGCD01029946;GBDF01014351;XR_001234578 MODEL 8772130 protein-coding LOC102030214 uncharacterized LOC102030214 NW_004955498 6523298 6526394 - 102030214 AGCD01063114;XM_005406420 XP_005406477 MODEL 8962776 protein-coding Srrm4 serine/arginine repetitive matrix 4 ENCODES a protein that exhibits identical protein binding (ortholog); mRNA binding (ortholog); INVOLVED IN cell differentiation (ortholog); mRNA processing (ortholog); nervous system development (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Hearing Disorders (ortholog); vestibular disease (ortholog); FOUND IN nucleus (ortholog) NW_004955455 12318529 12473420 - 102018157 AGCD01046033;AGCD01046034;AGCD01046035;AGCD01046036;AGCD01046037;AGCD01046038;GBDI01308207;XM_013520452;XM_013520453 XP_013375906;XP_013375907 MODEL 8767685 protein-coding Sirpa signal regulatory protein alpha ENCODES a protein that exhibits cell-cell adhesion mediator activity (ortholog); GTPase regulator activity (ortholog); protein antigen binding (ortholog); INVOLVED IN actin filament organization (ortholog); cell migration (ortholog); cell motility (ortholog); ASSOCIATED WITH pre-malignant neoplasm (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955415 13030752 13072735 + 102011533 AGCD01016239;AGCD01016240;AGCD01016241;AGCD01016242;GBBH01061866;XM_005380740;XM_005380741;XM_005380742;XM_013512244;XM_013512245 XP_005380797;XP_005380798;XP_005380799;XP_013367698;XP_013367699 MODEL 9008276 ncrna LOC102024265 uncharacterized LOC102024265 NW_004955512 989850 1004243 - 102024265 AGCD01066628;XR_264441 MODEL 8837445 protein-coding LOC102007489 melanoma antigen preferentially expressed in tumors-like NW_004955608 370665 408600 - 102007489 AGCD01077038;AGCD01077039;AGCD01077040;XM_013510119 XP_013365573 MODEL 8845882 protein-coding LOC102021537 heterogeneous nuclear ribonucleoprotein M-like NW_004955465 3678561 3680629 - 102021537 AGCD01050388;XM_013521806 XP_013377260 MODEL 8827916 protein-coding Yars2 tyrosyl-tRNA synthetase 2 ENCODES a protein that exhibits L-tyrosine binding (ortholog); protein homodimerization activity (ortholog); tRNA binding (ortholog); INVOLVED IN mitochondrial tyrosyl-tRNA aminoacylation (ortholog); tRNA aminoacylation (ortholog); ASSOCIATED WITH genetic disease (ortholog); mitochondrial metabolism disease (ortholog); myopathy, lactic acidosis, and sideroblastic anemia (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955505 3004084 3011003 + 102006369 AGCD01065010;GBCB01061117;GBDF01222575;XM_005407111 XP_005407168 MODEL 8838553 protein-coding Polr3a RNA polymerase III subunit A ENCODES a protein that exhibits 5'-3' RNA polymerase activity (ortholog); chromatin binding (ortholog); DNA-directed RNA polymerase activity (ortholog); INVOLVED IN innate immune response (ortholog); positive regulation of interferon-beta production (ortholog); termination of RNA polymerase III transcription (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH genetic disease (ortholog); hypomyelinating leukodystrophy 4 (ortholog); hypomyelinating leukodystrophy 7 (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955437 14446059 14483336 + 102021175 AGCD01034672;AGCD01034673;GBDI01264392;XM_005389899 XP_005389956 MODEL 8892690 protein-coding Nectin2 nectin cell adhesion molecule 2 ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN acrosome assembly (ortholog); cellular anatomical entity morphogenesis (ortholog); cilium organization (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); atherosclerosis (ortholog); FOUND IN apical junction complex (ortholog); cell surface (ortholog); cell-cell contact zone (ortholog) NW_004955555 1959702 1985679 + 102027465 AGCD01073118;GBDF01009102;XM_005412475;XM_005412476 XP_005412532;XP_005412533 MODEL 10132708 ncrna LOC106146602 uncharacterized LOC106146602 NW_004955486 3728040 3729740 + 106146602 AGCD01059036;GBDJ01095107;XR_001231104 MODEL 9035780 ncrna LOC102025365 uncharacterized LOC102025365 NW_004955488 5333649 5334649 + 102025365 AGCD01059618;GBDF01159254;XR_263999 MODEL 8812454 pseudo LOC102027755 zinc finger protein Pegasus pseudogene NW_004955422 4163295 4164891 - 102027755 AGCD01022534;XM_005384092 MODEL 8776021 pseudo LOC102029495 olfactory receptor 6N2-like NW_004955468 10719304 10720241 - 102029495 AGCD01052098 MODEL 8954698 ncrna LOC102018618 uncharacterized LOC102018618 NW_004955496 6005138 6016243 + 102018618 AGCD01062360;GBDF01112432;XR_001231412;XR_001231413;XR_001231414;XR_001231415;XR_001231416;XR_001231417;XR_001231418;XR_001231419;XR_001231420;XR_001231421;XR_264181 MODEL 10088582 ncrna LOC106149319 uncharacterized LOC106149319 NW_004955442 18474251 18509325 + 106149319 AGCD01038007;AGCD01038008;AGCD01038009;GBDK01308117;XR_001235418;XR_001235419 MODEL 8859754 protein-coding Tfg trafficking from ER to golgi regulator ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 2 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955427 2328676 2362050 + 102023936 AGCD01026895;AGCD01026896;AGCD01026897;GBBH01060487;GBDF01082468;XM_005386305 XP_005386362 MODEL 9031652 pseudo LOC102004632 protein DBF4 homolog A pseudogene NW_004955520 4533977 4536441 + 102004632 AGCD01068120 MODEL 10236546 ncrna LOC106146357 uncharacterized LOC106146357 NW_004955406 42559076 42559645 + 106146357 AGCD01006712;GBDK01095616;XR_001230762 MODEL 10323363 ncrna LOC106150138 uncharacterized LOC106150138 NW_004955465 2850426 2855300 + 106150138 AGCD01050363;GBBH01182784;XR_001236767 MODEL 9050723 pseudo LOC102023940 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1 pseudogene NW_004955511 2720046 2722099 - 102023940 AGCD01066427 MODEL 8706796 protein-coding LOC102018620 melanoma-associated antigen 8-like NW_004955498 2322033 2323007 - 102018620 AGCD01062784;XM_013505524 XP_013360978 MODEL 8917191 pseudo LOC102027103 DNA endonuclease RBBP8 pseudogene NW_004955432 5725983 5726747 - 102027103 AGCD01030796 MODEL 8705978 protein-coding Pkia cAMP-dependent protein kinase inhibitor alpha ENCODES a protein that exhibits cAMP-dependent protein kinase inhibitor activity (ortholog); protein kinase A catalytic subunit binding (ortholog); INVOLVED IN negative regulation of cAMP-dependent protein kinase activity (ortholog); negative regulation of cAMP/PKA signal transduction (ortholog); negative regulation of catalytic activity (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955444 2498785 2532881 - 102013561 AGCD01038768;GBDK01234704;XM_005392066;XM_005392067;XM_013518200 XP_005392123;XP_005392124;XP_013373654 MODEL 8952069 protein-coding LOC102006413 60S ribosomal protein L31-like NW_004955403 19401656 19402305 + 102006413 AGCD01002125;XM_005373402 XP_005373459 MODEL 8913725 protein-coding Krt35 keratin 35 NW_004955451 15820687 15824284 - 102029144 AGCD01043637;GBDI01352709;XM_005394401 XP_005394458 MODEL 8926409 protein-coding Bnipl BCL2 interacting protein like ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN apoptotic process (ortholog); negative regulation of cell population proliferation (ortholog); regulation of growth rate (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955588 409509 417825 + 102021295 AGCD01076109;GBCC01012774;XM_005414480;XM_005414481;XM_005414482;XR_001232525 XP_005414537;XP_005414538;XP_005414539 MODEL 9049939 protein-coding LOC102018205 carbonyl reductase [NADPH] 2 NW_004955506 1131548 1133857 + 102018205 AGCD01065246;GBDF01237291;XM_005407225 XP_005407282 MODEL 10201630 ncrna LOC106147030 uncharacterized LOC106147030 NW_004955512 1986326 1991619 - 106147030 AGCD01066662;GBDF01249707;XR_001231728 MODEL 8791764 ncrna LOC102009031 uncharacterized LOC102009031 NW_004955413 3100551 3144356 - 102009031 AGCD01013567;AGCD01013568;GBBH01229827;XR_001233023;XR_001233024;XR_001233025;XR_001233026;XR_001233027 MODEL 10349363 ncrna LOC106146746 uncharacterized LOC106146746 NW_004955494 280043 282018 - 106146746 AGCD01061373;GBCE01130710;XR_001231314 MODEL 9068074 ncrna LOC102010191 uncharacterized LOC102010191 NW_004955521 1508637 1515821 + 102010191 AGCD01068187;GBDF01220340;XR_264600;XR_264602 MODEL 9043088 protein-coding Ldlrad4 low density lipoprotein receptor class A domain containing 4 ENCODES a protein that exhibits R-SMAD binding (ortholog); INVOLVED IN negative regulation of cell migration (ortholog); negative regulation of epithelial to mesenchymal transition (ortholog); negative regulation of SMAD protein signal transduction (ortholog); FOUND IN early endosome membrane (ortholog) NW_004955402 384177 508876 - 102010216 AGCD01000017;AGCD01000018;AGCD01000019;AGCD01000020;AGCD01000021;AGCD01000022;AGCD01000023;AGCD01000024;AGCD01000025;AGCD01000026;AGCD01000027;GBBH01041473;GBDI01368625;XM_013512658 XP_013368112 MODEL 8883495 pseudo LOC102015546 heterogeneous nuclear ribonucleoprotein A3-like NW_004955502 7680400 7683778 - 102015546 AGCD01064457 MODEL 8716520 protein-coding LOC102003601 EKC/KEOPS complex subunit LAGE3-like NW_004955585 4764 6040 + 102003601 AGCD01075987;XM_005414426 XP_005414483 MODEL 9019716 protein-coding Slc35f2 solute carrier family 35 member F2 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog); tRNA queuosine(34) biosynthetic process from salvaged queuine (ortholog); FOUND IN Golgi membrane (ortholog); plasma membrane (ortholog) NW_004955412 10111134 10156575 - 102003744 AGCD01012757;AGCD01012758;GBCQ01037767;XM_013511242 XP_013366696 MODEL 8905427 pseudo LOC102029497 60S ribosomal protein L17 pseudogene NW_004955414 1418340 1418909 + 102029497 AGCD01014768 MODEL 9007454 protein-coding Etnppl ethanolamine-phosphate phospho-lyase ENCODES a protein that exhibits ethanolamine-phosphate phospho-lyase activity (ortholog); INVOLVED IN cellular response to glucocorticoid stimulus (ortholog); ceramide phosphoethanolamine catabolic process (ortholog); gene expression (ortholog) NW_004955496 1274929 1292802 + 102028103 AGCD01062252;GBDF01054944;XM_005406194 XP_005406251 MODEL 8859249 protein-coding Spink1 serine peptidase inhibitor Kazal type 1 ENCODES a protein that exhibits peptidase inhibitor activity (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN cellular response to peptide hormone stimulus (ortholog); negative regulation of calcium ion import (ortholog); negative regulation of peptidase activity (ortholog); ASSOCIATED WITH Acute Experimental Pancreatitis (ortholog); cervical adenocarcinoma (ortholog); Chronic Experimental Pancreatitis (ortholog); FOUND IN extracellular region (ortholog) NW_004955415 6328672 6378611 + 102010474 AGCD01016014;GBDF01155364;XM_005380652;XM_005380653 XP_005380709;XP_005380710 MODEL 8757403 protein-coding Igfbpl1 insulin like growth factor binding protein like 1 INVOLVED IN cellular response to tumor cell (ortholog); FOUND IN extracellular region (ortholog) NW_004955419 28133512 28148462 + 102010489 AGCD01020459;AGCD01020460;GBBH01048948;XM_013513091 XP_013368545 MODEL 9035736 ncrna LOC102024275 uncharacterized LOC102024275 NW_004955540 1652575 1655151 - 102024275 AGCD01071306;GBDF01189067;XR_264819 MODEL 8982303 pseudo LOC102007492 serine/threonine-protein kinase pim-2 pseudogene NW_004955769 5 841 - 102007492 AGCD01078313;XM_005415103 MODEL 8766123 protein-coding Sirt1 sirtuin 1 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); caspase binding (ortholog); deacetylase activity (ortholog); INVOLVED IN angiogenesis (ortholog); behavioral response to starvation (ortholog); cardiac muscle cell apoptotic process (ortholog); PARTICIPATES IN histone modification pathway; hypoxia inducible factor pathway; p53 signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN axon (ortholog); chromatin (ortholog); chromatin silencing complex (ortholog) NW_004955425 20280725 20307663 + 102003783 AGCD01025726;AGCD01025727;AGCD01025728;GBCE01123136;GBDF01081323;XM_013514840 XP_013370294 MODEL 8775130 protein-coding LOC102012581 uncharacterized LOC102012581 NW_004955437 3361650 3366877 + 102012581 AGCD01034309;GBDF01223138;XM_013516728 XP_013372182 MODEL 9003288 pseudo LOC102019742 U6 snRNA-associated Sm-like protein LSm5 pseudogene NW_004955442 5390882 5391207 + 102019742 AGCD01037557 MODEL 8912273 protein-coding Pank3 pantothenate kinase 3 ENCODES a protein that exhibits acetyl-CoA binding (ortholog); ATP binding (ortholog); pantothenate kinase activity (ortholog); INVOLVED IN coenzyme A biosynthetic process (ortholog); phosphorylation (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955408 21630849 21643432 - 102023007 AGCD01008557;GBDK01239308;XM_013509138 XP_013364592 MODEL 8852172 ncrna LOC102028439 uncharacterized LOC102028439 NW_004955500 7063944 7106508 + 102028439 AGCD01063899;AGCD01063900;AGCD01063901;GBCQ01131901;XR_264242 MODEL 8939295 pseudo LOC102003287 60S ribosomal protein L23a pseudogene NW_004955442 14142494 14143509 + 102003287 AGCD01037802 MODEL 10262044 protein-coding LOC106146603 uncharacterized LOC106146603 NW_004955402 10276817 10282803 + 106146603 AGCD01000255;AGCD01000256;XM_013504339 XP_013359793 MODEL 8866356 protein-coding Tnfsf9 TNF superfamily member 9 ENCODES a protein that exhibits signaling receptor binding (ortholog); tumor necrosis factor receptor superfamily binding (ortholog); INVOLVED IN myeloid dendritic cell differentiation (ortholog); positive regulation of activated T cell proliferation (ortholog); positive regulation of cytotoxic T cell differentiation (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); B-cell lymphoma (ortholog); colorectal cancer (ortholog); FOUND IN plasma membrane (ortholog) NW_004955495 3101965 3107552 - 102009959 AGCD01061823;AGCD01061824;GBBH01023646;GBDF01260918;XM_013505037 XP_013360491 MODEL 8837834 protein-coding LOC102025695 GTPase IMAP family member 3-like NW_004955491 5170006 5175947 - 102025695 AGCD01060472;GBDK01145875;XM_005404795;XM_013504612 XP_005404852;XP_013360066 MODEL 10147431 ncrna LOC106146482 uncharacterized LOC106146482 NW_004955481 1555640 1559181 - 106146482 AGCD01056836;GBDF01066549;XR_001230928 MODEL 9042013 ncrna LOC102020765 uncharacterized LOC102020765 NW_004955457 10726401 10733207 + 102020765 AGCD01046956;GBDF01222869;XR_262931 MODEL 10214240 ncrna LOC106149320 uncharacterized LOC106149320 NW_004955405 19574401 19578412 + 106149320 AGCD01005038;GBDK01206733;XR_001235421 MODEL 9041803 ncrna LOC102012150 uncharacterized LOC102012150 NW_004955403 54885558 54890045 - 102012150 AGCD01003107;GBDF01110602;XR_259275 MODEL 9018123 protein-coding Srrm5 serine/arginine repetitive matrix 5 NW_004955555 1347060 1349370 + 102013882 AGCD01073074;GBDF01002869;XM_005412528 XP_005412585 MODEL 9053426 ncrna LOC102009386 uncharacterized LOC102009386 NW_004955483 2296014 2317875 + 102009386 AGCD01057673;GBDF01118867;XR_001231019 MODEL 39133449 snorna SNORD58 Small nucleolar RNA SNORD58 10146075 protein-coding LOC106148121 uncharacterized LOC106148121 NW_004955416 27688636 27744893 + 106148121 AGCD01017619;AGCD01017620;GBDF01096205;XM_013512427 XP_013367881 MODEL 9048353 protein-coding LOC102003603 polyadenylate-binding protein 1-like 2 NW_004955591 918513 919451 - 102003603 AGCD01076286;XM_005414600 XP_005414657 MODEL 8818567 protein-coding Scml4 Scm polycomb group protein like 4 NW_004955411 32940367 33036779 - 102009810 AGCD01012340;AGCD01012341;AGCD01012342;GBDK01071981;XM_005377840;XM_013510901;XM_013510902 XP_005377897;XP_013366355;XP_013366356 MODEL 9029086 protein-coding LOC102024281 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4-like NW_004955439 14974380 14974592 + 102024281 AGCD01035995;XM_005390647 XP_005390704 MODEL 8832040 protein-coding Krt36 keratin 36 ENCODES a protein that exhibits structural constituent of skin epidermis (ortholog); INVOLVED IN regulation of keratinocyte differentiation (ortholog); FOUND IN intermediate filament cytoskeleton (ortholog); keratin filament (ortholog) NW_004955451 15828596 15837892 - 102029469 AGCD01043637;GBDF01112881;XM_005394402 XP_005394459 MODEL 8991169 protein-coding Polr3b RNA polymerase III subunit B ENCODES a protein that exhibits 5'-3' RNA polymerase activity (ortholog); DNA-directed RNA polymerase activity (ortholog); DNA/RNA hybrid binding (ortholog); INVOLVED IN positive regulation of innate immune response (ortholog); positive regulation of interferon-beta production (ortholog); snRNA transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH amenorrhea (ortholog); Charcot-Marie-Tooth Disease Type 1I (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); RNA polymerase III complex (ortholog) NW_004955405 40353289 40451445 + 102021939 AGCD01005515;AGCD01005516;AGCD01005517;GBDF01078628;XM_005374620;XM_013519054 XP_005374677;XP_013374508 MODEL 39133655 snrna U4 U4 spliceosomal RNA 8928240 protein-coding LOC102026759 translation initiation factor IF-2-like NW_004955422 20302555 20303570 + 102026759 AGCD01023074;GBBH01005076;XM_005384551 XP_005384608 MODEL 8818527 ncrna LOC102006036 uncharacterized LOC102006036 NW_004955421 23412284 23447843 + 102006036 AGCD01022183;GBCQ01089850;XR_001233831;XR_260822 MODEL 8814875 protein-coding Phka2 phosphorylase kinase regulatory subunit alpha 2 INVOLVED IN protein phosphorylation (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH genetic disease (ortholog); glycogen storage disease (ortholog); glycogen storage disease IXa1 (ortholog); FOUND IN phosphorylase kinase complex (ortholog) NW_004955586 482353 549512 + 102006844 AGCD01076031;GBDJ01314660;XM_005414436;XM_005414437;XM_005414438 XP_005414493;XP_005414494;XP_005414495 MODEL 8742718 pseudo LOC102030216 methionine aminopeptidase 2-like NW_004955426 4084449 4093408 + 102030216 AGCD01026088 MODEL 9016485 protein-coding LOC102004635 uncharacterized LOC102004635 NW_004955524 2023272 2031552 + 102004635 AGCD01068792;GBDF01249148;XM_013507193 XP_013362647 MODEL 10272550 protein-coding LOC106146483 TBC1 domain family member 1-like NW_004955481 9974667 9975132 - 106146483 AGCD01057130;GBDK01214068;XM_013503417 XP_013358871 MODEL 8736580 pseudo LOC102020766 60S ribosomal protein L30-like NW_004955408 13245352 13245694 + 102020766 AGCD01008351 MODEL 8792174 protein-coding Spink2 serine peptidase inhibitor Kazal type 2 INVOLVED IN acrosome assembly (ortholog); fertilization (ortholog); male germ cell proliferation (ortholog); ASSOCIATED WITH spermatogenic failure 29 (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); neuron projection (ortholog) NW_004955447 14285248 14291835 + 102024175 AGCD01040998;GBDF01007420;XM_005392865 XP_005392922 MODEL 9011473 pseudo LOC102025367 polyprenol reductase-like NW_004955490 2653858 2656890 + 102025367 AGCD01060146 MODEL 8852638 protein-coding Ets1 ETS proto-oncogene 1, transcription factor ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN angiogenesis involved in wound healing (ortholog); cell motility (ortholog); cellular response to hydrogen peroxide (ortholog); PARTICIPATES IN altered p53 signaling pathway; hypoxia inducible factor pathway; interleukin-4 signaling pathway; ASSOCIATED WITH celiac disease (ortholog); Experimental Diabetes Mellitus (ortholog); Mouth Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955412 29433730 29602389 - 102010567 AGCD01013279;AGCD01013280;AGCD01013281;AGCD01013282;AGCD01013283;GBCC01027243;XM_005378524;XM_005378525;XM_005378526;XM_005378527;XM_005378529;XM_013511111;XM_013511112;XM_013511113 XP_005378581;XP_005378582;XP_005378583;XP_005378584;XP_005378586;XP_013366565;XP_013366566;XP_013366567 MODEL 151707881 snorna SNORD6 small nucleolar RNA, C/D box 6 8972611 pseudo LOC102018206 protein slowmo homolog 2 pseudogene NW_004955428 4184563 4185357 + 102018206 AGCD01027669 MODEL 8941258 ncrna LOC102027756 uncharacterized LOC102027756 NW_004955423 25971060 25978028 + 102027756 AGCD01024089;GBDF01130787;XR_001234075;XR_001234076 MODEL 8833984 protein-coding Nectin3 nectin cell adhesion molecule 3 ENCODES a protein that exhibits cell adhesion mediator activity (ortholog); cell adhesion molecule binding (ortholog); identical protein binding (ortholog); INVOLVED IN cell adhesion (ortholog); cell-cell adhesion (ortholog); cochlea morphogenesis (ortholog); ASSOCIATED WITH cataract (ortholog); Teratozoospermia (ortholog); FOUND IN adherens junction (ortholog); apical junction complex (ortholog); axon (ortholog) NW_004955427 11639942 11731910 + 102019088 AGCD01027192;AGCD01027193;AGCD01027194;GBDF01003170;XM_005386610 XP_005386667 MODEL 8935190 pseudo LOC102007494 glycoprotein endo-alpha-1,2-mannosidase pseudogene NW_004955403 21715243 21717598 - 102007494 AGCD01002203;XM_005373891 MODEL 8864018 protein-coding LOC102012583 putative alpha-1-antitrypsin-related protein NW_004955438 14225509 14229594 + 102012583 AGCD01035332;XM_005390440 XP_005390497 MODEL 8963181 protein-coding Sirt2 sirtuin 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); histone acetyltransferase binding (ortholog); INVOLVED IN cellular response to caloric restriction (ortholog); cellular response to epinephrine stimulus (ortholog); cellular response to hypoxia (ortholog); PARTICIPATES IN histone modification pathway; Sirtuin mediated pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); cocaine dependence (ortholog); high grade glioma (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); chromosome (ortholog) NW_004955468 626365 644441 + 102005244 AGCD01051719;GBDF01006521;XM_005399813;XM_005399815;XM_005399816;XM_005399817;XM_005399818;XM_005399819;XM_005399820 XP_005399870;XP_005399872;XP_005399873;XP_005399874;XP_005399875;XP_005399876;XP_005399877 MODEL 8806919 protein-coding LOC102019743 olfactory receptor 4K13-like NW_004955550 225493 226434 - 102019743 AGCD01072488;XM_005412128 XP_005412185 MODEL 10237261 ncrna LOC106146747 uncharacterized LOC106146747 NW_004955494 344473 345409 + 106146747 AGCD01061376;GBBH01052790;XR_001231315 MODEL 8919427 ncrna LOC102028443 uncharacterized LOC102028443 NW_004955506 3711821 3714401 - 102028443 AGCD01065319;GBDF01040063;XR_264345 MODEL 10227145 protein-coding LOC106146604 uncharacterized LOC106146604 NW_004955486 9692978 9695081 + 106146604 AGCD01059195;XM_013504202 XP_013359656 MODEL 8755376 protein-coding LOC102003292 E3 ubiquitin-protein ligase RNF114 NW_004955445 8256029 8268349 - 102003292 AGCD01039569;AGCD01039570;GBBH01035032;GBCB01026100;XM_005392324 XP_005392381 MODEL 8705148 pseudo LOC102015547 26S proteasome non-ATPase regulatory subunit 10-like NW_004955503 7733146 7733943 - 102015547 AGCD01064799 MODEL 8742137 protein-coding LOC102010200 protein S100-A6-like NW_004955545 34876 36059 - 102010200 AGCD01071760;GBDI01224351;XM_005411403 XP_005411460 MODEL 10211062 ncrna LOC106150139 uncharacterized LOC106150139 NW_004955466 11341205 11348620 + 106150139 AGCD01051087;XR_001236771 MODEL 8917654 ncrna LOC102021541 uncharacterized LOC102021541 NW_004955412 24094867 24096661 + 102021541 AGCD01013110;GBDF01192647;XR_260020 MODEL 10259529 ncrna LOC106146358 uncharacterized LOC106146358 NW_004955475 9837593 9840052 - 106146358 AGCD01055075;GBDJ01262678;XR_001230763;XR_001230764 MODEL 8827310 protein-coding Tsku tsukushi, small leucine rich proteoglycan ENCODES a protein that exhibits transforming growth factor beta binding (ortholog); INVOLVED IN anterior commissure morphogenesis (ortholog); camera-type eye development (ortholog); cholesterol efflux (ortholog); FOUND IN extracellular region (ortholog) NW_004955414 15166349 15178284 - 102013919 AGCD01015181;GBBH01001334;XM_005379848;XM_005379849 XP_005379905;XP_005379906 MODEL 8850899 protein-coding Ybey ybeY metalloendoribonuclease ENCODES a protein that exhibits RNA endonuclease activity (ortholog); FOUND IN mitochondrion (ortholog); nucleus (ortholog) NW_004955407 42706407 42710962 + 102017954 AGCD01007895;GBCE01160007;XM_005375930;XR_001231523;XR_259644;XR_259645 XP_005375987 MODEL 8741438 protein-coding LOC102006414 uncharacterized LOC102006414 NW_004956036 9 5036 + 102006414 AGCD01078919;XM_005415164 XP_005415221 MODEL 8840223 protein-coding Igflr1 IGF like family receptor 1 FOUND IN plasma membrane (ortholog) NW_004955468 2806612 2812751 + 102018710 AGCD01051838;GBCE01043528;XM_013522291 XP_013377745 MODEL 10325396 ncrna LOC106146484 uncharacterized LOC106146484 NW_004955481 7628543 7631985 + 106146484 AGCD01057070;XR_001230932 MODEL 8737858 protein-coding Slc35f3 solute carrier family 35 member F3 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog); thiamine transport (ortholog) NW_004955492 5349445 5661186 - 102028980 AGCD01060744;AGCD01060745;AGCD01060746;AGCD01060747;AGCD01060748;AGCD01060749;AGCD01060750;GBBH01193275;XM_005404959;XM_005404960 XP_005405016;XP_005405017 MODEL 8961898 protein-coding Srrt serrate, RNA effector molecule ENCODES a protein that exhibits DNA binding (ortholog); mRNA cap binding complex binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN neuronal stem cell population maintenance (ortholog); positive regulation of neurogenesis (ortholog); primary miRNA processing (ortholog); ASSOCIATED WITH glioblastoma (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); protein-containing complex (ortholog) NW_004955573 86975 101538 - 102010646 AGCD01074961;GBBH01060953;XM_005413680;XM_005413681;XM_013509452 XP_005413737;XP_005413738;XP_013364906 MODEL 8858107 protein-coding Pkib cAMP-dependent protein kinase inhibitor beta ENCODES a protein that exhibits cAMP-dependent protein kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of cAMP-dependent protein kinase activity (ortholog); positive regulation of telomere maintenance (ortholog) NW_004955436 4433065 4600967 + 102022958 AGCD01033664;AGCD01033665;AGCD01033666;AGCD01033667;AGCD01033668;AGCD01033669;GBBH01005987;XM_005389139;XM_005389141;XM_005389142;XM_005389143;XM_005389144;XM_005389147;XM_013516610;XM_013516611;XM_013516612;XM_013516613 XP_005389196;XP_005389198;XP_005389199;XP_005389200;XP_005389201;XP_005389204;XP_013372064;XP_013372065;XP_013372066;XP_013372067 MODEL 8984553 protein-coding LOC102009387 bile acid-CoA:amino acid N-acyltransferase-like NW_004955419 24443222 24466306 + 102009387 AGCD01020347;GBDJ01035584;XM_005382801;XM_013513082 XP_005382858;XP_013368536 MODEL 8798102 protein-coding LOC102003605 protein FAM127A NW_004955602 144599 145888 + 102003605 AGCD01076763;AGCD01076764;GBBH01002232;GBCQ01009918;XM_005414828 XP_005414885 MODEL 8748199 protein-coding LOC102009035 uncharacterized LOC102009035 NW_004955413 33713020 33714649 + 102009035 AGCD01014688;GBDI01173861;XM_013511547;XM_013511548 XP_013367001;XP_013367002 MODEL 8872807 protein-coding Spink4 serine peptidase inhibitor Kazal type 4 INVOLVED IN response to xenobiotic stimulus (ortholog) NW_004955472 2406279 2415668 - 102010471 AGCD01053459;AGCD01053460;GBDI01140848;XM_005401107;XM_013522954 XP_005401164;XP_013378408 MODEL 8699603 protein-coding Pank4 pantothenate kinase 4 (inactive) ENCODES a protein that exhibits pantothenate kinase activity (ortholog); phosphatase activity (ortholog); ASSOCIATED WITH cataract (ortholog); Cataract 49 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955486 8703236 8716017 + 102006465 AGCD01059154;AGCD01059155;GBBH01065796;XM_005404165;XM_005404166 XP_005404222;XP_005404223 MODEL 8760026 protein-coding Krt39 keratin 39 NW_004955451 15383334 15391573 - 102021200 AGCD01043606;GBDF01058346;XM_005394378 XP_005394435 MODEL 9008457 protein-coding LOC102029499 hemoglobin subunit epsilon-1 NW_004955414 21201659 21208072 - 102029499 AGCD01015410;GBCE01126989;XM_005380077;XM_013511749 XP_005380134;XP_013367203 MODEL 8760906 pseudo LOC102027105 gametocyte-specific factor 1 pseudogene NW_004955519 4514234 4529682 + 102027105 AGCD01067985 MODEL 8765735 pseudo LOC102012585 cytochrome c oxidase protein 20 homolog pseudogene NW_004955441 6084988 6089834 + 102012585 AGCD01036899;XM_005391041 MODEL 8763331 protein-coding Sirt3 sirtuin 3 ENCODES a protein that exhibits enzyme binding (ortholog); histone H3K14 deacetylase activity, NAD-dependent (ortholog); NAD-dependent protein lysine deacetylase activity (ortholog); INVOLVED IN aerobic respiration (ortholog); mitochondrial fusion (ortholog); negative regulation of ERK1 and ERK2 cascade (ortholog); PARTICIPATES IN histone modification pathway; Sirtuin mediated pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); Alzheimer's disease (ortholog); congestive heart failure (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); mitochondrial inner membrane (ortholog) NW_004955476 11794951 11826244 + 102028186 AGCD01055474;AGCD01055475;GBBH01140166;XM_005401880;XM_005401881;XM_005401882;XM_005401884;XM_005401885;XM_013502916 XP_005401937;XP_005401938;XP_005401939;XP_005401941;XP_005401942;XP_013358370 MODEL 8829036 protein-coding LOC102018625 leucine-rich repeat-containing protein 37A2-like NW_004955506 6704785 6744679 + 102018625 AGCD01065442;AGCD01065443;AGCD01065444;AGCD01065445;AGCD01065446;AGCD01065447;AGCD01065448;AGCD01065449;AGCD01065450;AGCD01065451;GBBH01032482;GBCE01006258;XM_005407497 XP_005407554 MODEL 8908135 pseudo LOC102030220 protein SET-like NW_004955507 2330547 2351198 - 102030220 AGCD01065585;AGCD01065586 MODEL 9026084 pseudo LOC102004637 TBC1 domain family member 12 pseudogene NW_004955435 21292150 21303948 - 102004637 AGCD01033474;AGCD01033475 MODEL 8832315 ncrna LOC102012151 uncharacterized LOC102012151 NW_004955452 12802984 12851810 - 102012151 AGCD01044366;AGCD01044367;GBDF01073900;XR_001236023;XR_001236024 MODEL 8837597 protein-coding Panx1 pannexin 1 ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); ATP transmembrane transporter activity (ortholog); INVOLVED IN ATP transport (ortholog); calcium ion transport (ortholog); cell-cell signaling (ortholog); PARTICIPATES IN neuron-to-neuron signaling pathway via the electrical synapse; ASSOCIATED WITH Acute Liver Failure (ortholog); autosomal recessive polycystic kidney disease (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN bleb (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955414 405483 448470 - 102018914 AGCD01014726;GBCB01075360;GBDJ01421893;XM_005379682 XP_005379739 MODEL 10233288 protein-coding LOC106148122 uncharacterized LOC106148122 NW_004955416 30187701 30200897 + 106148122 AGCD01017681;AGCD01017682;GBCE01173132;XM_013512429 XP_013367883 MODEL 10267276 ncrna LOC106147031 uncharacterized LOC106147031 NW_004955512 2830728 2857157 + 106147031 AGCD01066690;XR_001231730 MODEL 8969156 protein-coding Scn10a sodium voltage-gated channel alpha subunit 10 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN AV node cell action potential (ortholog); behavioral response to pain (ortholog); bundle of His cell action potential (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); Brugada syndrome (ortholog); FOUND IN axon (ortholog); C-fiber (ortholog); clathrin complex (ortholog) NW_004955427 25157179 25244020 + 102029206 AGCD01027535;AGCD01027536;AGCD01027537;GBDF01255242;XM_005386574;XM_005386575;XM_005386576;XM_005386577;XM_013515027 XP_005386631;XP_005386632;XP_005386633;XP_005386634;XP_013370481 MODEL 8924399 protein-coding Boc BOC cell adhesion associated, oncogene regulated ENCODES a protein that exhibits protein carrier activity (ortholog); INVOLVED IN axon guidance (ortholog); positive regulation of myoblast differentiation (ortholog); positive regulation of smoothened signaling pathway (ortholog); PARTICIPATES IN altered Hedgehog signaling pathway; Hedgehog signaling pathway; pancreatic cancer pathway; ASSOCIATED WITH Colorectal Neoplasms (ortholog); gastrointestinal stromal tumor (ortholog); holoprosencephaly (ortholog); FOUND IN axon (ortholog); axonal growth cone (ortholog); growth cone (ortholog) NW_004955427 13424478 13492527 + 102003160 AGCD01027249;AGCD01027250;AGCD01027251;GBDJ01189062;XM_005386397;XM_005386398;XM_013515110;XM_013515111;XM_013515112 XP_005386454;XP_005386455;XP_013370564;XP_013370565;XP_013370566 MODEL 8907411 pseudo LOC102025373 meteorin pseudogene NW_004955422 20231565 20233265 + 102025373 AGCD01023070 MODEL 8866487 protein-coding Tfip11 tuftelin interacting protein 11 INVOLVED IN negative regulation of protein-containing complex assembly (ortholog); spliceosomal complex disassembly (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); chromosome, telomeric region (ortholog); extracellular matrix (ortholog) NW_004955455 1083816 1097233 - 102015479 AGCD01045568;GBDK01232399;XM_005396148 XP_005396205 MODEL 39133656 snrna U4 U4 spliceosomal RNA 8742067 ncrna LOC102007499 uncharacterized LOC102007499 NW_004955404 47564519 47595536 - 102007499 AGCD01004483;GBDF01290414;XR_001235118;XR_259342 MODEL 8919161 protein-coding Polr3c RNA polymerase III subunit C ENCODES a protein that exhibits single-stranded DNA binding (ortholog); INVOLVED IN positive regulation of innate immune response (ortholog); positive regulation of interferon-beta production (ortholog); termination of RNA polymerase III transcription (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH lymphopenia (ortholog); neutropenia (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase III complex (ortholog) NW_004955568 242834 263053 - 102021492 AGCD01074506;AGCD01074507;AGCD01074508;AGCD01074509;GBCB01109428;GBDJ01127774;XM_013509335 XP_013364789 MODEL 8977075 protein-coding Ets2 ETS proto-oncogene 2, transcription factor ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); nuclear glucocorticoid receptor binding (ortholog); INVOLVED IN ectodermal cell fate commitment (ortholog); mesoderm development (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); Breast Neoplasms (ortholog); Craniofacial Abnormalities (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955407 37747152 37764170 + 102020309 AGCD01007785;GBDF01304491;XM_005375762 XP_005375819 MODEL 8863518 pseudo LOC102023941 TBC1 domain family member 13 pseudogene NW_004955429 18891038 18896873 - 102023941 AGCD01028927;AGCD01028928 MODEL 10364018 ncrna LOC106146748 uncharacterized LOC106146748 NW_004955407 38680167 38686179 - 106146748 AGCD01007810;AGCD01007811;XR_001231319 MODEL 8926576 protein-coding LOC102006039 uncharacterized LOC102006039 NW_004955491 8353014 8354199 + 102006039 AGCD01060614;GBCB01010474;XM_013504570 XP_013360024 MODEL 10307004 ncrna LOC106146605 uncharacterized LOC106146605 NW_004955407 32388427 32429805 - 106146605 AGCD01007674;AGCD01007675;GBDF01242157;XR_001231113 MODEL 8870333 ncrna LOC102010203 uncharacterized LOC102010203 NW_004955551 286892 305957 - 102010203 AGCD01072653;AGCD01072654;GBDK01406556;XR_001232275;XR_264923 MODEL 8715938 pseudo LOC102003293 exportin-6 pseudogene NW_004955445 11816035 11825133 + 102003293 AGCD01039717 MODEL 8991146 protein-coding LOC102020772 granzyme B-like NW_004955409 35665966 35675256 + 102020772 AGCD01010428;GBDF01186080;XM_005376983 XP_005377040 MODEL 8845544 protein-coding Krt4 keratin 4 INVOLVED IN cytoskeleton organization (ortholog); epithelial cell differentiation (ortholog); negative regulation of epithelial cell proliferation (ortholog); ASSOCIATED WITH contact dermatitis (ortholog); genetic disease (ortholog); Genetic Skin Diseases (ortholog); FOUND IN cell surface (ortholog); intermediate filament cytoskeleton (ortholog); keratin filament (ortholog) NW_004955458 108803 115755 - 102007973 AGCD01047106;GBDI01010821;XM_005397129 XP_005397186 MODEL 8996811 pseudo LOC102024282 protein slowmo homolog 2 pseudogene NW_004955439 11396392 11398794 + 102024282 AGCD01035905;AGCD01035906 MODEL 626189195 snorna SNORD60 small nucleolar RNA, C/D box 60 8817636 pseudo LOC102027757 DDB1- and CUL4-associated factor 17-like NW_004955423 9411978 9438414 + 102027757 AGCD01023658;AGCD01023659 MODEL 8991751 ncrna LOC102018626 uncharacterized LOC102018626 NW_004955507 2802458 2809081 + 102018626 AGCD01065594;GBDF01153258;XR_264374 MODEL 8841591 protein-coding Ldlrap1 low density lipoprotein receptor adaptor protein 1 ENCODES a protein that exhibits amyloid-beta binding (ortholog); AP-1 adaptor complex binding (ortholog); AP-2 adaptor complex binding (ortholog); INVOLVED IN amyloid precursor protein metabolic process (ortholog); cellular response to cytokine stimulus (ortholog); cholesterol homeostasis (ortholog); ASSOCIATED WITH autosomal recessive hypercholesterolemia (ortholog); familial hypercholesterolemia (ortholog); Hypercholesterolemia (ortholog); FOUND IN axon (ortholog); basal plasma membrane (ortholog); cytoplasm (ortholog) NW_004955452 5081919 5102349 + 102016443 AGCD01044010;AGCD01044011;GBCE01032145;GBDI01002270;XM_013519648 XP_013375102 MODEL 8728284 protein-coding Igfn1 immunoglobulin like and fibronectin type III domain containing 1 INVOLVED IN myoblast differentiation (ortholog); myoblast fusion (ortholog); myotube differentiation (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); FOUND IN nucleus (ortholog); Z disc (ortholog) NW_004955406 37332936 37363694 + 102010865 AGCD01006574;AGCD01006575;GBCE01003380;XM_005375163;XM_013522126;XM_013522134;XM_013522139;XM_013522143 XP_005375220;XP_013377580;XP_013377588;XP_013377593;XP_013377597 MODEL 8731686 protein-coding Tnik TRAF2 and NCK interacting kinase ENCODES a protein that exhibits protein kinase activity (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cytoskeleton organization (ortholog); intracellular signal transduction (ortholog); PARTICIPATES IN tumor necrosis factor mediated signaling pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); autosomal recessive intellectual developmental disorder 54 (ortholog); colorectal cancer (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); cytoskeleton (ortholog) NW_004955420 1166340 1542712 - 102022926 AGCD01020569;AGCD01020570;AGCD01020571;AGCD01020572;AGCD01020573;AGCD01020574;GBDI01026985;XM_005382987;XM_005382988;XM_005382989;XM_005382990 XP_005383044;XP_005383045;XP_005383046;XP_005383047 MODEL 8846396 pseudo LOC102009388 liver carboxylesterase 2-like NW_004955484 9699400 9714908 - 102009388 AGCD01058425 MODEL 10103907 ncrna LOC106149321 uncharacterized LOC106149321 NW_004955442 13287669 13305700 + 106149321 AGCD01037768;AGCD01037769;GBDF01041833;XR_001235424 MODEL 8724114 protein-coding LOC102019745 beta-crystallin B2 NW_004955442 19887415 19891508 - 102019745 AGCD01038080;GBDK01038850;XM_013517684 XP_013373138 MODEL 8925183 pseudo LOC102026762 protein FAM45A pseudogene NW_004955423 8750524 8751368 - 102026762 AGCD01023635 MODEL 8716588 protein-coding LOC102009036 60S ribosomal protein L5 NW_004955469 9922760 9923788 - 102009036 AGCD01052521;XM_005400516 XP_005400573 MODEL 9042343 pseudo LOC102003606 probable ATP-dependent RNA helicase DDX6 pseudogene NW_004955607 367321 368195 + 102003606 AGCD01076984 MODEL 8930645 ncrna LOC102015548 uncharacterized LOC102015548 NW_004955506 1094592 1095488 + 102015548 AGCD01065244;GBDF01181732;XR_264319 MODEL 10287367 ncrna LOC106150140 uncharacterized LOC106150140 NW_004955466 9755322 9774557 + 106150140 AGCD01051053;AGCD01051054;AGCD01051055;GBDF01146329;XR_001236772 MODEL 8989733 pseudo LOC102027107 phosphatase and actin regulator 4-like NW_004955435 14348496 14352309 - 102027107 AGCD01033228 MODEL 10281384 ncrna LOC106146359 uncharacterized LOC106146359 NW_004955475 10639923 10641115 - 106146359 AGCD01055105;GBCQ01077949;XR_001230765 MODEL 8766958 ncrna LOC102012592 uncharacterized LOC102012592 NW_004955583 223012 224427 - 102012592 AGCD01075806;GBDF01221589;XR_001232492 MODEL 8884861 ncrna LOC102018207 uncharacterized LOC102018207 NW_004955508 4313935 4333410 - 102018207 AGCD01065865;AGCD01065866;GBDJ01266761;XR_001231653 MODEL 10158184 ncrna LOC106146485 uncharacterized LOC106146485 NW_004955406 7901161 7902865 + 106146485 AGCD01005779;GBDF01115521;XR_001230933 MODEL 9054797 protein-coding LOC102003607 PRAME family member 12-like NW_004955615 28450 30897 - 102003607 AGCD01077247;XM_005414978 XP_005415035 MODEL 8800240 protein-coding Srsf1 serine and arginine rich splicing factor 1 ENCODES a protein that exhibits DNA topoisomerase binding (ortholog); mRNA binding (ortholog); protein kinase B binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); cardiac muscle contraction (ortholog); cellular response to interleukin-17 (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Cardiomegaly (ortholog); cervix uteri carcinoma in situ (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955451 4992634 4996619 + 102004545 AGCD01043157;GBDI01001036;XM_005394041;XR_262578 XP_005394098 MODEL 9063202 protein-coding Pkig cAMP-dependent protein kinase inhibitor gamma ENCODES a protein that exhibits cAMP-dependent protein kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of protein import into nucleus (ortholog); negative regulation of protein kinase activity (ortholog); negative regulation of transcription by RNA polymerase II (ortholog) NW_004955445 12717962 12818734 - 102017284 AGCD01039761;AGCD01039762;GBDJ01085855;XM_005392468;XM_005392470 XP_005392525;XP_005392527 MODEL 39131440 protein-coding SPINK5 serine peptidase inhibitor, Kazal type 5 9067236 ncrna LOC102028445 uncharacterized LOC102028445 NW_004955430 569893 572942 - 102028445 AGCD01029095;GBDF01304768;XR_261399 MODEL 8990427 protein-coding Nectin4 nectin cell adhesion molecule 4 ENCODES a protein that exhibits identical protein binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN negative regulation of natural killer cell mediated cytotoxicity (ortholog); ASSOCIATED WITH Ectodermal Dysplasia-Syndactyly Syndrome 1 (ortholog); genetic disease (ortholog); FOUND IN adherens junction (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955468 12841369 12858331 - 102025897 AGCD01052189;GBCQ01123131;XM_005400235;XM_005400236;XM_013522348;XM_013522349 XP_005400292;XP_005400293;XP_013377802;XP_013377803 MODEL 8832261 protein-coding Phkb phosphorylase kinase regulatory subunit beta INVOLVED IN glucose homeostasis (ortholog); glycogen catabolic process (ortholog); positive regulation of glycogen catabolic process (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH genetic disease (ortholog); glycogen storage disease IXB (ortholog); FOUND IN phosphorylase kinase complex (ortholog) NW_004955474 7599657 7801083 - 102010476 AGCD01054526;AGCD01054527;AGCD01054528;AGCD01054529;AGCD01054530;GBCB01007397;XM_005401407;XM_005401408;XM_013502733;XM_013502734;XM_013502735 XP_005401464;XP_005401465;XP_013358187;XP_013358188;XP_013358189 MODEL 8842745 pseudo LOC102025378 pre-mRNA-splicing factor SPF27 pseudogene NW_004955425 25170569 25172343 - 102025378 AGCD01025910 MODEL 9040095 protein-coding Scn11a sodium voltage-gated channel alpha subunit 11 ENCODES a protein that exhibits fibroblast growth factor binding (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN action potential (ortholog); action potential initiation (ortholog); acute inflammatory response (ortholog); ASSOCIATED WITH autosomal dominant distal hereditary motor neuronopathy 14 (ortholog); Charcot-Marie-Tooth disease (ortholog); Congenital Pain Insensitivity (ortholog); FOUND IN axon (ortholog); axonal growth cone (ortholog); C-fiber (ortholog) NW_004955427 24917709 25109499 + 102028878 AGCD01027525;AGCD01027526;AGCD01027527;AGCD01027528;AGCD01027529;AGCD01027530;AGCD01027531;AGCD01027532;GBDF01016590;XM_013515078;XM_013515079 XP_013370532;XP_013370533 MODEL 9042277 pseudo LOC102029502 voltage-dependent anion-selective channel protein 2 pseudogene NW_004955414 13972802 13974188 - 102029502 AGCD01015132 MODEL 8912965 protein-coding Tslp thymic stromal lymphopoietin ENCODES a protein that exhibits cytokine activity (ortholog); interleukin-7 receptor binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); cell surface receptor signaling pathway via JAK-STAT (ortholog); cytokine-mediated signaling pathway (ortholog); ASSOCIATED WITH Albuminuria (ortholog); allergic contact dermatitis (ortholog); allergic disease (ortholog); FOUND IN extracellular region (ortholog) NW_004955418 4041529 4045534 - 102025006 AGCD01018807;XM_005382342 XP_005382399 MODEL 9026248 protein-coding LOC102021543 sulfotransferase 6B1-like NW_004955413 17616399 17636221 - 102021543 AGCD01014159;AGCD01014160;GBDK01289164;XM_005379072 XP_005379129 MODEL 8916565 ncrna LOC102006417 uncharacterized LOC102006417 NW_004955404 45816780 45821911 + 102006417 AGCD01004453;GBDF01094431;XR_259341 MODEL 8809961 pseudo LOC102015549 ras-related protein Rab-5A pseudogene NW_004955427 3406284 3411397 - 102015549 AGCD01026938 MODEL 8830245 ncrna LOC102025696 uncharacterized LOC102025696 NW_004955492 5066754 5070824 + 102025696 AGCD01060739;GBDF01155966;XR_264049 MODEL 8731318 ncrna LOC102030221 uncharacterized LOC102030221 NW_004955510 2102089 2110252 - 102030221 AGCD01066207;GBDF01187128;XR_264404 MODEL 10353883 protein-coding LOC106146606 uncharacterized LOC106146606 NW_004955486 8611755 8620045 + 106146606 AGCD01059151;GBDK01185961;XM_013504239 XP_013359693 MODEL 8994049 protein-coding Sirt4 sirtuin 4 ENCODES a protein that exhibits lipoamidase activity (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein-cysteine ADP-ribosyltransferase activity (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); DNA damage response (ortholog); L-glutamine metabolic process (ortholog); PARTICIPATES IN histone modification pathway; Sirtuin mediated pathway; ASSOCIATED WITH Cardiomegaly (ortholog); endomyocardial fibrosis (ortholog); Insulin Resistance (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955455 11322812 11334786 - 102013381 AGCD01045997;GBCB01086523;XM_005396513;XM_005396514 XP_005396570;XP_005396571 MODEL 9008420 protein-coding Slc35f4 solute carrier family 35 member F4 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog) NW_004955466 11436970 11465593 - 102028516 AGCD01051093;AGCD01051094;GBDF01105346;XM_013521882 XP_013377336 MODEL 10353063 ncrna LOC106147032 uncharacterized LOC106147032 NW_004955512 4391386 4403239 + 106147032 AGCD01066741;GBDI01232213;XR_001231731 MODEL 39132023 snorna SNORD61 small nucleolar RNA, C/D box 61 39131463 protein-coding IGHM immunoglobulin heavy constant mu 8884705 protein-coding Tfpi tissue factor pathway inhibitor INVOLVED IN cellular response to interleukin-1 (ortholog); cellular response to lipopolysaccharide (ortholog); cellular response to steroid hormone stimulus (ortholog); PARTICIPATES IN coagulation cascade pathway; syndecan signaling pathway; ASSOCIATED WITH Airway Obstruction (ortholog); atrial fibrillation (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); FOUND IN caveola (ortholog); cell surface (ortholog); extracellular region (ortholog) NW_004955403 10925155 11004229 + 102011608 AGCD01001942;AGCD01001943;AGCD01001944;AGCD01001945;GBCQ01095047;XM_005373329 XP_005373386 MODEL 8870995 ncrna LOC102028446 uncharacterized LOC102028446 NW_004955430 8757310 8761127 + 102028446 AGCD01029392;GBDF01013688;XR_261424 MODEL 9009390 protein-coding Polr3d RNA polymerase III subunit D ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN positive regulation of innate immune response (ortholog); positive regulation of interferon-beta production (ortholog); termination of RNA polymerase III transcription (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase III complex (ortholog) NW_004955403 45721266 45727214 + 102005657 AGCD01002826;GBDK01187148;XM_005373655 XP_005373712 MODEL 10342567 ncrna LOC106149322 uncharacterized LOC106149322 NW_004955442 5882190 5898129 - 106149322 AGCD01037572;AGCD01037573;GBDF01236702;XR_001235425 MODEL 9067035 protein-coding Etv1 ETS variant transcription factor 1 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN axon guidance (ortholog); mechanosensory behavior (ortholog); muscle organ development (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); Neoplastic Processes (ortholog); Prostatic Neoplasms (ortholog) NW_004955410 17445496 17535856 - 102018368 AGCD01010989;GBDF01182370;XM_013510658;XM_013510659;XM_013510660;XM_013510662;XM_013510663 XP_013366112;XP_013366113;XP_013366114;XP_013366116;XP_013366117 MODEL 8959850 protein-coding LOC102009041 natural cytotoxicity triggering receptor 3 ligand 1-like NW_004955414 32155049 32171552 + 102009041 AGCD01015774;AGCD01015775;AGCD01015776;GBDF01277682;XM_005380380;XM_005380381;XM_013512029 XP_005380437;XP_005380438;XP_013367483 MODEL 8995680 pseudo LOC102010208 protein kinase C iota type pseudogene NW_004955446 317633 321748 - 102010208 AGCD01039938;XM_005392595 MODEL 9017015 pseudo LOC102004640 coiled-coil domain-containing protein 94 pseudogene NW_004955532 391528 392376 + 102004640 AGCD01070116 MODEL 9009383 pseudo LOC102003295 gonadotropin-releasing hormone receptor pseudogene NW_004955447 5170735 5171274 + 102003295 AGCD01040747;XM_005392953 MODEL 10077059 pseudo LOC106148123 nucleolar and spindle-associated protein 1 pseudogene NW_004955416 31324089 31339628 - 106148123 AGCD01017730;AGCD01017731;AGCD01017732 MODEL 10346105 protein-coding LOC106150141 uncharacterized LOC106150141 NW_004955466 6261519 6264900 - 106150141 AGCD01050922;AGCD01050923;GBBH01165353;XM_013521880 XP_013377334 MODEL 9008465 ncrna LOC102029503 uncharacterized LOC102029503 NW_004955472 10148347 10217610 - 102029503 AGCD01053706;AGCD01053707;AGCD01053708;AGCD01053709;AGCD01053710;GBDF01123542;XR_001237066;XR_001237067;XR_263564 MODEL 8886398 pseudo LOC102009045 60S ribosomal protein L12-like NW_004955475 11058006 11058745 + 102009045 AGCD01055139 MODEL 8839333 ncrna LOC102024285 uncharacterized LOC102024285 NW_004955441 15676243 15697570 + 102024285 AGCD01037251;GBCB01089296;XR_001235297;XR_262085;XR_262086;XR_262087 MODEL 39133663 snrna U4 U4 spliceosomal RNA 9066078 protein-coding Bod1 biorientation of chromosomes in cell division 1 ENCODES a protein that exhibits protein phosphatase 2A binding (ortholog); protein phosphatase inhibitor activity (ortholog); INVOLVED IN mitotic metaphase chromosome alignment (ortholog); mitotic sister chromatid biorientation (ortholog); mitotic sister chromatid cohesion, centromeric (ortholog); FOUND IN centrosome (ortholog); outer kinetochore (ortholog); Set1C/COMPASS complex (ortholog) NW_004955408 26235229 26242576 - 102025658 AGCD01008665;GBDF01008932;XM_005376586 XP_005376643 MODEL 8875978 protein-coding Krt40 keratin 40 NW_004955451 15401606 15406390 - 102022995 AGCD01043606;XM_005394618 XP_005394675 MODEL 9065594 ncrna LOC102007503 uncharacterized LOC102007503 NW_004955453 6872218 6875092 - 102007503 AGCD01044732;GBDF01261600;XR_001236134 MODEL 8845125 protein-coding LOC102018628 olfactory receptor 8K3-like NW_004955511 1357599 1358540 + 102018628 AGCD01066365;XM_013506373 XP_013361827 MODEL 9022679 protein-coding LOC102003608 RNA-binding protein 45 NW_004955403 18755127 18773060 - 102003608 AGCD01002110;AGCD01002111;AGCD01002112;GBCQ01097237;GBDJ01233290;XM_005373393;XM_005373395 XP_005373450;XP_005373452 MODEL 10286694 ncrna LOC106146749 uncharacterized LOC106146749 NW_004955494 2042272 2053000 - 106146749 AGCD01061434;GBDF01285582;XR_001231316;XR_001231317;XR_001231318 MODEL 8856282 protein-coding Tnip1 TNFAIP3 interacting protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); mitogen-activated protein kinase binding (ortholog); polyubiquitin modification-dependent protein binding (ortholog); INVOLVED IN glycoprotein biosynthetic process (ortholog); leukocyte cell-cell adhesion (ortholog); MyD88-dependent toll-like receptor signaling pathway (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); asthma (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955408 2575324 2621845 + 102018060 AGCD01008014;AGCD01008015;GBCE01023304;XM_005376061;XM_013508185;XM_013508186;XM_013508187;XM_013508191;XM_013508195 XP_005376118;XP_013363639;XP_013363640;XP_013363641;XP_013363645;XP_013363649 MODEL 8738868 protein-coding LOC102006044 uncharacterized LOC102006044 NW_004955423 26874436 26882443 - 102006044 AGCD01024108;GBDJ01373506;XM_013514385 XP_013369839 MODEL 8906559 protein-coding LOC102019754 disintegrin and metalloproteinase domain-containing protein 21-like NW_004955402 1994589 1997255 - 102019754 AGCD01000065;GBDF01010897;XM_005372587 XP_005372644 MODEL 8914094 protein-coding Sirt5 sirtuin 5 ENCODES a protein that exhibits NAD+ binding (ortholog); protein-glutaryllysine deglutarylase activity (ortholog); protein-malonyllysine demalonylase activity (ortholog); INVOLVED IN negative regulation of cardiac muscle cell apoptotic process (ortholog); negative regulation of reactive oxygen species metabolic process (ortholog); peptidyl-lysine demalonylation (ortholog); PARTICIPATES IN histone modification pathway; Sirtuin mediated pathway; FOUND IN cytosol (ortholog); mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog) NW_004955465 1129217 1167604 - 102011419 AGCD01050331;AGCD01050332;AGCD01050333;AGCD01050334;AGCD01050335;AGCD01050336;GBDJ01185808;XM_005398799 XP_005398856 MODEL 8869181 pseudo LOC102026766 condensin-2 complex subunit H2 pseudogene NW_004955425 25551663 25553604 - 102026766 AGCD01025922 MODEL 8757371 protein-coding Spink5 serine peptidase inhibitor Kazal type 5 ENCODES a protein that exhibits peptidase inhibitor activity (ortholog); serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN epidermal cell differentiation (ortholog); negative regulation of antibacterial peptide biosynthetic process (ortholog); negative regulation of antibacterial peptide production (ortholog); ASSOCIATED WITH aspirin-induced respiratory disease (ortholog); asthma (ortholog); atopic dermatitis (ortholog); FOUND IN cell cortex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955415 6118616 6186632 - 102009598 AGCD01016012;GBCC01001605;XM_013512362;XM_013512363;XM_013512364 XP_013367816;XP_013367817;XP_013367818 MODEL 8782956 protein-coding Ybx1 Y-box binding protein 1 ENCODES a protein that exhibits C5-methylcytidine-containing RNA reader activity (ortholog); chromatin binding (ortholog); GTPase binding (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); CRD-mediated mRNA stabilization (ortholog); epidermis development (ortholog); PARTICIPATES IN cisplatin drug pathway; p53 signaling pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); Colonic Neoplasms (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN CRD-mediated mRNA stability complex (ortholog); cytoplasm (ortholog); cytoplasmic stress granule (ortholog) NW_004955537 2234052 2254528 + 102016420 AGCD01070920;AGCD01070921;GBBH01004351;GBCQ01008012;XM_005410716 XP_005410773 MODEL 9015405 protein-coding Panx2 pannexin 2 ENCODES a protein that exhibits gap junction channel activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cell-cell signaling (ortholog); response to ischemia (ortholog); PARTICIPATES IN neuron-to-neuron signaling pathway via the electrical synapse; ASSOCIATED WITH cholangiocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog) NW_004955413 33220145 33224241 + 102022806 AGCD01014657;GBCE01072622;GBCE01072623;XM_005379546 XP_005379603 MODEL 9057667 protein-coding Phkg1 phosphorylase kinase catalytic subunit gamma 1 ENCODES a protein that exhibits ATP binding (ortholog); enzyme binding (ortholog); phosphorylase kinase activity (ortholog); INVOLVED IN glycogen catabolic process (ortholog); glycogen metabolic process (ortholog); protein phosphorylation (ortholog); PARTICIPATES IN glycogen degradation pathway; FOUND IN phosphorylase kinase complex (ortholog) NW_004955456 8251789 8259205 - 102003092 AGCD01046465;GBCB01003996;XM_005396702 XP_005396759 MODEL 8857900 ncrna LOC102020776 uncharacterized LOC102020776 NW_004955410 18783758 18811216 + 102020776 AGCD01011012;AGCD01011013;GBDF01145426;XR_259848 MODEL 10079107 ncrna LOC106146360 uncharacterized LOC106146360 NW_004955475 5454422 5459285 + 106146360 AGCD01054919;GBBH01119079;XR_001230766 MODEL 8796089 protein-coding Scn1a sodium voltage-gated channel alpha subunit 1 ENCODES a protein that exhibits voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN action potential (ortholog); adult walking behavior (ortholog); cardiac muscle cell action potential involved in contraction (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal dominant nocturnal frontal lobe epilepsy (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); intercalated disc (ortholog) NW_004955449 8072910 8220763 + 102009237 AGCD01042008;XM_005393285;XM_005393286;XM_005393287;XM_013518812 XP_005393342;XP_005393343;XP_005393344;XP_013374266 MODEL 8703977 pseudo LOC102015560 RNA-binding protein 7 pseudogene NW_004955434 16063246 16064603 - 102015560 AGCD01032511 MODEL 8889145 ncrna LOC102020777 uncharacterized LOC102020777 NW_004955410 26452943 26471154 + 102020777 AGCD01011193;GBDF01235780;XR_259868 MODEL 8885974 pseudo LOC102023942 olfactory receptor 4C15-like NW_004955511 210327 211363 + 102023942 AGCD01066323 MODEL 10143408 ncrna LOC106147033 uncharacterized LOC106147033 NW_004955512 2805902 2815137 + 106147033 AGCD01066690;GBDK01124197;XR_001231732 MODEL 8923840 protein-coding Pklr pyruvate kinase L/R ENCODES a protein that exhibits monosaccharide binding (ortholog); pyruvate kinase activity (ortholog); INVOLVED IN cellular response to epinephrine stimulus (ortholog); cellular response to insulin stimulus (ortholog); glycolytic process (ortholog); PARTICIPATES IN Fanconi syndrome pathway; forkhead class A signaling pathway; glycogen storage disease type VII pathway; ASSOCIATED WITH Burns (ortholog); congenital nonspherocytic hemolytic anemia (ortholog); congenital nonspherocytic hemolytic anemia 2 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955545 1742432 1749632 - 102004859 AGCD01071869;GBCQ01174475;XM_005411597;XM_005411598;XM_013508344;XM_013508345;XM_013508346;XM_013508347 XP_005411654;XP_005411655;XP_013363798;XP_013363799;XP_013363800;XP_013363801 MODEL 8828038 protein-coding LOC102009392 60S ribosomal protein L10-like NW_004955491 5944474 5944994 - 102009392 AGCD01060510;XM_005404834 XP_005404891 MODEL 8998849 pseudo LOC102012152 UMP-CMP kinase-like NW_004955405 25714441 25715377 + 102012152 AGCD01005179 MODEL 9052787 protein-coding Nedd1 NEDD1 gamma-tubulin ring complex targeting factor FOUND IN apical part of cell (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955405 33066734 33109750 + 102012153 AGCD01005352;AGCD01005353;GBDF01005946;XM_005374503 XP_005374560 MODEL 8802540 pseudo LOC102027111 actin-binding LIM protein 3 pseudogene NW_004955535 179466 181094 - 102027111 AGCD01070612 MODEL 9033867 protein-coding Tsn translin ENCODES a protein that exhibits identical protein binding (ortholog); mRNA binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN siRNA processing (ortholog); FOUND IN cytoplasm (ortholog); endoribonuclease complex (ortholog); nucleoplasm (ortholog) NW_004955459 8285442 8299329 - 102012835 AGCD01048139;GBDJ01275284;XM_005397637 XP_005397694 MODEL 8813534 protein-coding Polr3e RNA polymerase III subunit E INVOLVED IN termination of RNA polymerase III transcription (ortholog); transcription by RNA polymerase III (ortholog); transcription initiation at RNA polymerase III promoter (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; FOUND IN nucleoplasm (ortholog); nucleus (ortholog); RNA polymerase III complex (ortholog) NW_004955493 933381 962314 + 102012547 AGCD01060873;GBDF01119676;XM_005405071;XM_005405076;XM_005405077;XM_013504853 XP_005405128;XP_005405133;XP_005405134;XP_013360307 MODEL 8805467 protein-coding LOC102027761 melanoma-associated antigen 11-like NW_004955498 5418816 5419664 - 102027761 AGCD01063077;XM_013505529 XP_013360983 MODEL 10151680 ncrna LOC106146486 uncharacterized LOC106146486 NW_004955481 4546894 4558682 - 106146486 AGCD01056943;AGCD01056944;GBDF01280681;XR_001230934;XR_001230935 MODEL 8743582 pseudo LOC102010209 zinc finger CCCH domain-containing protein 15 pseudogene NW_004955446 1347899 1403306 + 102010209 AGCD01039963;AGCD01039964;AGCD01039965 MODEL 8920226 pseudo LOC102003297 MICOS complex subunit MIC27 pseudogene NW_004955449 412796 415575 + 102003297 AGCD01041765 MODEL 8744412 protein-coding LOC102018211 WD repeat-containing protein 49-like NW_004955431 14732986 14816717 - 102018211 AGCD01030338;AGCD01030339;AGCD01030340;AGCD01030341;GBDF01022038;XM_013515901 XP_013371355 MODEL 8743108 protein-coding Ldoc1 LDOC1 regulator of NFKB signaling INVOLVED IN cellular response to lipopolysaccharide (ortholog); cellular response to muramyl dipeptide (ortholog); maternal placenta development (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955539 127705 129147 + 102018980 AGCD01071181;GBDF01086281;XM_005410901 XP_005410958 MODEL 9038025 protein-coding LOC102030223 olfactory receptor 5D13-like NW_004955511 525260 526273 + 102030223 AGCD01066333;XM_005408197 XP_005408254 MODEL 8873541 protein-coding LOC102004641 cytochrome b-245 light chain ENCODES a protein that exhibits electron transfer activity (ortholog); protein heterodimerization activity (ortholog); SH3 domain binding (ortholog); INVOLVED IN cellular response to angiotensin (ortholog); cellular response to gamma radiation (ortholog); cellular response to glucose stimulus (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); asthma (ortholog); atherosclerosis (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955541 2570843 2573822 - 102004641 AGCD01071416;GBCQ01010127;GBDI01016531;XM_013507989 XP_013363443 MODEL 8765316 pseudo LOC102025697 60S ribosomal protein L18-like NW_004955422 18221681 18222454 - 102025697 AGCD01022941 MODEL 10333681 ncrna LOC106146361 uncharacterized LOC106146361 NW_004955476 9147994 9170745 + 106146361 AGCD01055379;GBBH01012233;XR_001230769;XR_001230770;XR_001230771;XR_001230772;XR_001230773 MODEL 8947282 protein-coding Srsf10 serine and arginine rich splicing factor 10 ENCODES a protein that exhibits RNA binding (ortholog); INVOLVED IN cytosolic transport (ortholog); mRNA splice site recognition (ortholog); mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Endometrial Neoplasms (ortholog); macular degeneration (ortholog); Ovarian Neoplasms (ortholog); FOUND IN axon terminus (ortholog); dendrite (ortholog); neuronal cell body (ortholog) NW_004955452 3831545 3846292 - 102024418 AGCD01043949;AGCD01043950;GBCE01032956;XM_005394789;XM_005394790;XM_005394791;XM_005394792;XM_005394794;XM_013519618 XP_005394846;XP_005394847;XP_005394848;XP_005394849;XP_005394851;XP_013375072 MODEL 8847713 ncrna LOC102025380 uncharacterized LOC102025380 NW_004955426 18639518 18643536 + 102025380 AGCD01026526;GBDF01114609;XR_261204 MODEL 8982355 protein-coding LOC102009047 protein FAM122A-like NW_004955415 23111023 23111850 + 102009047 AGCD01016551;XM_013512167 XP_013367621 MODEL 8705466 pseudo LOC102024286 olfactory receptor 11G2-like NW_004955550 750775 751537 + 102024286 AGCD01072520 MODEL 8709668 protein-coding Ighmbp2 immunoglobulin mu DNA binding protein 2 ENCODES a protein that exhibits 5'-3' DNA helicase activity (ortholog); 5'-3' RNA helicase activity (ortholog); ATP binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); neuromuscular process (ortholog); spinal cord motor neuron differentiation (ortholog); ASSOCIATED WITH Abnormal Reflexes (ortholog); autosomal dominant distal hereditary motor neuronopathy (ortholog); autosomal dominant distal hereditary motor neuronopathy 1 (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955422 17017855 17047724 - 102028646 AGCD01022906;AGCD01022907;AGCD01022908;GBDF01154386;XM_005384263 XP_005384320 MODEL 8714257 protein-coding LOC102020778 low affinity immunoglobulin gamma Fc region receptor III-B-like NW_004955462 14705877 14711037 + 102020778 AGCD01049456;GBDF01001028;XM_005398304;XM_013521431 XP_005398361;XP_013376885 MODEL 8989729 protein-coding LOC102026769 taste receptor type 2 member 1-like NW_004955504 6934844 6935728 - 102026769 AGCD01064931;XM_013505870 XP_013361324 MODEL 9043841 ncrna LOC102012598 uncharacterized LOC102012598 NW_004955403 57139269 57141788 + 102012598 AGCD01003149;GBBH01126380;XR_001234448;XR_259277;XR_259278 MODEL 8874082 protein-coding Etv2 ETS variant transcription factor 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN blastocyst development (ortholog); blood vessel morphogenesis (ortholog); BMP signaling pathway (ortholog); ASSOCIATED WITH Aortic Remodeling (ortholog); limb ischemia (ortholog); polydactyly (ortholog) NW_004955468 4857023 4859926 + 102026095 AGCD01051923;GBDF01048409;XM_013522386 XP_013377840 MODEL 8760333 protein-coding Pkm pyruvate kinase M1/2 ENCODES a protein that exhibits ADP binding (ortholog); histone H3T11 kinase activity (ortholog); identical protein binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); canonical glycolysis (ortholog); glucose metabolic process (ortholog); PARTICIPATES IN glycolysis pathway; hypoxia inducible factor pathway; pyruvate metabolic pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); COVID-19 (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955450 4907962 4935179 + 102004440 AGCD01042486;GBCQ01008781;XM_005393620;XM_005393621;XM_005393622;XM_005393623 XP_005393677;XP_005393678;XP_005393679;XP_005393680 MODEL 8964265 protein-coding LOC102019755 arylacetamide deacetylase NW_004955448 2918412 3246858 + 102019755 AGCD01041293;AGCD01041294;AGCD01041295;AGCD01041296;AGCD01041297;AGCD01041298;AGCD01041299;AGCD01041300;AGCD01041301;AGCD01041302;AGCD01041303;AGCD01041304;AGCD01041305;AGCD01041306;AGCD01041307;AGCD01041308;AGCD01041309;AGCD01041310;AGCD01041311;AGCD01041312;AGCD01041313;AGCD01041314;AGCD01041315;AGCD01041316;AGCD01041317;AGCD01041318;AGCD01041319;GBDF01135740;XM_013518616 XP_013374070 MODEL 10284101 protein-coding LOC106150142 translation initiation factor IF-2-like NW_004955466 8952717 8958082 - 106150142 AGCD01051009;AGCD01051010;GBBH01137518;GBCB01040872;XM_013521881 XP_013377335 MODEL 8803287 pseudo LOC102027118 olfactory receptor 6C4-like NW_004955546 2448181 2449134 + 102027118 AGCD01072092 MODEL 9035323 protein-coding Sirt6 sirtuin 6 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); damaged DNA binding (ortholog); INVOLVED IN base-excision repair (ortholog); cardiac muscle cell differentiation (ortholog); cellular response to angiotensin (ortholog); PARTICIPATES IN histone modification pathway; Sirtuin mediated pathway; ASSOCIATED WITH Cardiomegaly (ortholog); Cardiotoxicity (ortholog); endomyocardial fibrosis (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); chromosome, subtelomeric region (ortholog) NW_004955495 4641883 4650518 + 102011999 AGCD01061938;GBDI01262314;XM_013505251;XM_013505252 XP_013360705;XP_013360706 MODEL 10294445 pseudo LOC106146607 protein LSM14 homolog A pseudogene NW_004955486 5812663 5813661 + 106146607 AGCD01059092 MODEL 39132792 snorna SNORD62 Small nucleolar RNA SNORD62 8864151 protein-coding Phkg2 phosphorylase kinase catalytic subunit gamma 2 ENCODES a protein that exhibits ATP binding (ortholog); calmodulin binding (ortholog); enzyme binding (ortholog); INVOLVED IN glycogen catabolic process (ortholog); glycogen metabolic process (ortholog); positive regulation of glycogen catabolic process (ortholog); PARTICIPATES IN glycogen degradation pathway; ASSOCIATED WITH familial lipoprotein lipase deficiency (ortholog); Fibrosis (ortholog); genetic disease (ortholog); FOUND IN cytosol (ortholog); phosphorylase kinase complex (ortholog) NW_004955493 7612251 7622486 + 102017783 AGCD01061205;AGCD01061206;GBDI01084312;XM_005405269;XM_013504763;XM_013504764 XP_005405326;XP_013360217;XP_013360218 MODEL 9063553 ncrna LOC102029506 uncharacterized LOC102029506 NW_004955474 6368831 6371116 + 102029506 AGCD01054475;GBDF01154165;XR_263597 MODEL 9064575 ncrna LOC102015565 uncharacterized LOC102015565 NW_004955533 708206 712745 - 102015565 AGCD01070326;GBCQ01050607;XR_264739 MODEL 8896102 protein-coding LOC102027120 vomeronasal type-1 receptor 3-like NW_004955558 294452 304796 + 102027120 AGCD01073361;AGCD01073362;AGCD01073363;XM_005412731 XP_005412788 MODEL 8860735 protein-coding Tfpi2 tissue factor pathway inhibitor 2 INVOLVED IN cellular response to fluid shear stress (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Breast Neoplasms (ortholog); Carotid Artery Injuries (ortholog) NW_004955432 10635626 10641345 - 102010188 AGCD01030936;GBDK01006832;XM_005415328;XM_013516032 XP_005415385;XP_013371486 MODEL 8856615 protein-coding LOC102030226 epididymal-specific lipocalin-6-like NW_004955513 4058796 4062014 + 102030226 AGCD01066914;GBDI01104232;XM_005408480 XP_005408537 MODEL 8824520 pseudo LOC102003610 DCN1-like protein 1 pseudogene NW_004955757 39 601 + 102003610 AGCD01078282 MODEL 10178327 protein-coding LOC106146751 uncharacterized LOC106146751 NW_004955407 38831467 38869005 - 106146751 AGCD01007812;AGCD01007813;GBCQ01174369;XM_013505003 XP_013360457 MODEL 8997804 protein-coding LOC102028447 olfactory receptor 5AK2-like NW_004955511 2128446 2129381 + 102028447 AGCD01066393;XM_005408251 XP_005408308 MODEL 8709250 ncrna LOC102009395 uncharacterized LOC102009395 NW_004955422 28736276 28739914 + 102009395 AGCD01023368;GBDF01220110;XR_260928 MODEL 10311536 ncrna LOC106149323 uncharacterized LOC106149323 NW_004955442 9449875 9456050 + 106149323 AGCD01037681;AGCD01037682;GBDK01331591;XR_001235426 MODEL 8783419 protein-coding Tnip2 TNFAIP3 interacting protein 2 ENCODES a protein that exhibits polyubiquitin modification-dependent protein binding (ortholog); protein kinase binding (ortholog); INVOLVED IN CD40 signaling pathway (ortholog); cellular response to lipopolysaccharide (ortholog); interleukin-1-mediated signaling pathway (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955514 1682641 1687881 - 102005741 AGCD01067059;GBCE01032325;GBCQ01006867;XM_013506803 XP_013362257 MODEL 8729416 pseudo LOC102006418 biorientation of chromosomes in cell division protein 1 pseudogene NW_004955452 7619927 7620452 - 102006418 AGCD01044178 MODEL 8990732 protein-coding Nedd4 NEDD4 E3 ubiquitin protein ligase ENCODES a protein that exhibits beta-2 adrenergic receptor binding (ortholog); channel inhibitor activity (ortholog); enzyme binding (ortholog); INVOLVED IN adaptive immune response (ortholog); blood vessel morphogenesis (ortholog); cellular response to UV (ortholog); PARTICIPATES IN vascular endothelial growth factor signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Keloid (ortholog); muscular atrophy (ortholog); FOUND IN cell cortex (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955409 183645 281252 + 102008191 AGCD01009139;AGCD01009140;AGCD01009141;GBDI01291128;XM_005376602;XM_005376604;XM_005376605;XM_005376606;XM_013510263 XP_005376659;XP_005376661;XP_005376662;XP_005376663;XP_013365717 MODEL 8987533 protein-coding Ybx2 Y-box binding protein 2 ENCODES a protein that exhibits chromatin binding (ortholog); lipid binding (ortholog); mRNA 3'-UTR binding (ortholog); INVOLVED IN mRNA stabilization (ortholog); negative regulation of translation (ortholog); oocyte development (ortholog); FOUND IN cytoplasm (ortholog); ribonucleoprotein complex (ortholog) NW_004955467 9624506 9629904 + 102008613 AGCD01051520;GBDF01004444;XM_013522114;XM_013522115;XM_013522116;XM_013522117;XM_013522118 XP_013377568;XP_013377569;XP_013377570;XP_013377571;XP_013377572 MODEL 9065816 protein-coding Slc35f5 solute carrier family 35 member F5 ENCODES a protein that exhibits choline transmembrane transporter activity (ortholog); INVOLVED IN choline transport (ortholog) NW_004955459 15407686 15440536 + 102030285 AGCD01048322;GBBH01117606;GBCC01033256;XM_013521078 XP_013376532 MODEL 8705090 protein-coding Scn1b sodium voltage-gated channel beta subunit 1 ENCODES a protein that exhibits sodium channel inhibitor activity (ortholog); sodium channel regulator activity (ortholog); INVOLVED IN axon guidance (ortholog); cardiac conduction (ortholog); cardiac muscle cell action potential involved in contraction (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; ASSOCIATED WITH asphyxiating thoracic dystrophy 3 (ortholog); benign epilepsy with centrotemporal spikes (ortholog); Brugada syndrome (ortholog); FOUND IN extracellular region (ortholog); intercalated disc (ortholog); node of Ranvier (ortholog) NW_004955468 4375517 4383383 + 102009704 AGCD01051908;GBDI01008492;GBDJ01353495;XM_013522375 XP_013377829 MODEL 9001004 ncrna LOC102018213 uncharacterized LOC102018213 NW_004955433 14380516 14385234 + 102018213 AGCD01031721;GBDF01051190;XR_261596 MODEL 9035274 protein-coding Krt5 keratin 5 ENCODES a protein that exhibits scaffold protein binding (ortholog); INVOLVED IN intermediate filament polymerization (ortholog); regulation of cell migration (ortholog); regulation of protein localization (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Animal Mammary Neoplasms (ortholog); basal cell carcinoma (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); intermediate filament (ortholog) NW_004955547 2926154 2931954 - 102010738 AGCD01072302;GBCE01076577;XM_005411945 XP_005412002 MODEL 8879498 protein-coding LOC102010210 transmembrane protease serine 11A NW_004955447 4915932 4966492 + 102010210 AGCD01040736;GBDI01055640;XM_005392828 XP_005392885 MODEL 10370792 protein-coding LOC106147034 transcription initiation factor TFIID subunit 4-like NW_004955513 5295814 5296856 + 106147034 AGCD01066967;GBDF01100307;GBDF01185808;XM_013506553 XP_013362007 MODEL 9011370 protein-coding LOC102021545 neuroblastoma breakpoint family member 4-like NW_004955468 10000866 10052333 + 102021545 AGCD01052065;AGCD01052066;GBDK01417179;XM_005400141;XM_013522485;XM_013522486 XP_005400198;XP_013377939;XP_013377940 MODEL 10219506 protein-coding LOC106146362 uncharacterized LOC106146362 NW_004955476 6482992 6488434 - 106146362 AGCD01055332;XM_013502898;XR_001230774 XP_013358352 MODEL 8773680 ncrna LOC102025381 uncharacterized LOC102025381 NW_004955506 3658763 3660305 + 102025381 AGCD01065318;GBDF01155637;XR_001231606;XR_264341;XR_264342 MODEL 8889659 protein-coding Spink6 serine peptidase inhibitor Kazal type 6 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN negative regulation of serine-type endopeptidase activity (ortholog); FOUND IN extracellular region (ortholog) NW_004955415 6041712 6053963 - 102007221 AGCD01016009;GBDJ01248322;XM_005380642 XP_005380699 MODEL 8911267 protein-coding Panx3 pannexin 3 ENCODES a protein that exhibits calcium channel activity (ortholog); gap junction hemi-channel activity (ortholog); INVOLVED IN cell-cell signaling (ortholog); osteoblast differentiation (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); gap junction (ortholog); plasma membrane (ortholog) NW_004955412 25676286 25684841 + 102010885 AGCD01013170;XM_005378429 XP_005378486 MODEL 8892349 protein-coding Tsnare1 t-SNARE domain containing 1 NW_004955454 743022 1203483 - 102020635 AGCD01044960;AGCD01044961;AGCD01044962;AGCD01044963;AGCD01044964;AGCD01044965;GBDF01179211;XM_013520010 XP_013375464 MODEL 9067021 protein-coding Polr3f RNA polymerase III subunit F ENCODES a protein that exhibits 4 iron, 4 sulfur cluster binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN positive regulation of innate immune response (ortholog); positive regulation of interferon-beta production (ortholog); termination of RNA polymerase III transcription (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH immunodeficiency 101 (ortholog); FOUND IN nucleus (ortholog); RNA polymerase III complex (ortholog) NW_004955415 27022081 27036475 + 102016803 AGCD01016621;AGCD01016622;GBDF01221498;XM_013512230;XM_013512231 XP_013367684;XP_013367685 MODEL 10157368 ncrna LOC106146487 uncharacterized LOC106146487 NW_004955481 1412888 1440980 + 106146487 AGCD01056832;GBDF01084245;XR_001230936 MODEL 8788818 protein-coding LOC102027764 taste receptor type 2 member 1-like NW_004955504 7359955 7360851 + 102027764 AGCD01064944;XM_005407098 XP_005407155 MODEL 8741657 protein-coding Etv3l ETS variant transcription factor 3 like NW_004955545 3121363 3132748 - 102017507 AGCD01071933;GBDI01354928;XM_005411734;XM_013508351;XM_013508352;XM_013508353;XM_013508354;XM_013508355;XM_013508356;XM_013508357;XR_001232196 XP_005411791;XP_013363805;XP_013363806;XP_013363807;XP_013363808;XP_013363809;XP_013363810;XP_013363811 MODEL 8772217 ncrna LOC102007508 uncharacterized LOC102007508 NW_004955406 43082611 43102023 - 102007508 AGCD01006724;XR_001230800 MODEL 8789774 protein-coding Leap2 liver enriched antimicrobial peptide 2 INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog) NW_004955408 4245574 4247117 + 102007086 AGCD01008099;GBDI01279296;XM_005376120 XP_005376177 MODEL 8840439 pseudo LOC102025705 ras-related protein Rab-5A-like NW_004955425 22284378 22297545 - 102025705 AGCD01025818 MODEL 39132796 snorna SNORD62 Small nucleolar RNA SNORD62 9001131 ncrna LOC102023943 uncharacterized LOC102023943 NW_004955512 697363 707004 + 102023943 AGCD01066620;GBDF01041142;XR_264439 MODEL 8717564 protein-coding Sirt7 sirtuin 7 ENCODES a protein that exhibits chromatin binding (ortholog); histone H3K18 deacetylase activity, NAD-dependent (ortholog); NAD-dependent protein lysine deacetylase activity (ortholog); INVOLVED IN DNA damage response (ortholog); DNA repair-dependent chromatin remodeling (ortholog); homologous chromosome pairing at meiosis (ortholog); PARTICIPATES IN histone modification pathway; RNA polymerase I transcription pathway; Sirtuin mediated pathway; ASSOCIATED WITH Reperfusion Injury (ortholog); steatotic liver disease (ortholog); systemic scleroderma (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955506 1252271 1258728 + 102021374 AGCD01065252;GBDF01192905;XM_005407236;XM_005407237;XM_005407238;XM_005407239;XM_005407240;XM_013506059;XM_013506060 XP_005407293;XP_005407294;XP_005407295;XP_005407296;XP_005407297;XP_013361513;XP_013361514 MODEL 8915486 pseudo LOC102012157 signal peptidase complex catalytic subunit SEC11A pseudogene NW_004955406 365288 365823 - 102012157 AGCD01005615 MODEL 8819076 ncrna LOC102024291 uncharacterized LOC102024291 NW_004955564 1497990 1500048 - 102024291 AGCD01074225;GBDF01014269;XR_265022 MODEL 8871258 protein-coding Scn2a sodium voltage-gated channel alpha subunit 2 ENCODES a protein that exhibits calmodulin binding (ortholog); leucine zipper domain binding (ortholog); voltage-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (ortholog); INVOLVED IN axon development (ortholog); cellular response to hypoxia (ortholog); cerebral cortex development (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); autosomal dominant intellectual developmental disorder (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); glutamatergic synapse (ortholog) NW_004955449 8722043 8846165 - 102012382 AGCD01042020;AGCD01042021;AGCD01042022;AGCD01042023;AGCD01042024;AGCD01042025;AGCD01042026;GBBH01055930;XM_005393295;XM_005393296;XM_005393297;XM_005393298 XP_005393352;XP_005393353;XP_005393354;XP_005393355 MODEL 10154033 ncrna LOC106148124 uncharacterized LOC106148124 NW_004955416 29986569 29987972 - 106148124 AGCD01017673;GBCB01130721;XR_001233288 MODEL 10293583 ncrna LOC106146752 uncharacterized LOC106146752 NW_004955407 38870856 38871962 + 106146752 AGCD01007813;GBCQ01163845;XR_001231322 MODEL 8706262 pseudo LOC102026775 26S protease regulatory subunit 4-like NW_004955508 3435725 3438075 - 102026775 AGCD01065811 MODEL 39133664 snrna U4 U4 spliceosomal RNA 8955436 protein-coding LOC102020781 serpin B9-like NW_004955465 10319656 10329579 - 102020781 AGCD01050507;GBDJ01011006;XM_005398912 XP_005398969 MODEL 9044235 ncrna LOC102003298 uncharacterized LOC102003298 NW_004955449 5422486 5428279 - 102003298 AGCD01041932;AGCD01041933;GBDF01075789;XR_262489 MODEL 8732965 protein-coding Pkmyt1 protein kinase, membrane associated tyrosine/threonine 1 ENCODES a protein that exhibits kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN negative regulation of G2/M transition of mitotic cell cycle (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hepatocellular carcinoma (ortholog); melanoma (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955442 14368110 14372365 + 102009552 AGCD01037815;GBDF01004416;GBDJ01355796;XM_013517861 XP_013373315 MODEL 10356917 ncrna LOC106146608 uncharacterized LOC106146608 NW_004955486 5939880 5951720 + 106146608 AGCD01059095;AGCD01059096;GBDF01016378;XR_001231120 MODEL 8912971 protein-coding Bod1l1 biorientation of chromosomes in cell division 1 like 1 INVOLVED IN DNA damage response (ortholog); replication fork processing (ortholog); FOUND IN Set1C/COMPASS complex (ortholog) NW_004955480 10143053 10189194 + 102025577 AGCD01056757;GBCE01104986;GBDF01162845;XM_013503319 XP_013358773 MODEL 8967288 pseudo LOC102006045 60S ribosomal protein L31 pseudogene NW_004955495 3574458 3577550 + 102006045 AGCD01061862;XM_005406145 MODEL 8869786 pseudo LOC102018632 protein SET-like NW_004955432 3642624 3644695 + 102018632 AGCD01030672 MODEL 8932735 protein-coding Phlda1 pleckstrin homology like domain family A member 1 INVOLVED IN forebrain neuron differentiation (ortholog); glycoprotein biosynthetic process (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH allergic contact dermatitis (ortholog); atrial fibrillation (ortholog); cognitive disorder (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); nucleolus (ortholog) NW_004955405 15318785 15321316 - 102010219 AGCD01004942;AGCD01004943;GBCE01084948;XM_005374337 XP_005374394 MODEL 8735729 pseudo LOC102009049 vascular endothelial zinc finger 1 pseudogene NW_004955476 8879444 8880316 - 102009049 AGCD01055375 MODEL 8990973 ncrna LOC102015566 uncharacterized LOC102015566 NW_004955534 1023182 1115440 - 102015566 AGCD01070483;AGCD01070484;AGCD01070485;AGCD01070486;AGCD01070487;GBBH01146790;XR_001232056 MODEL 8747304 pseudo LOC102027121 nuclease-sensitive element-binding protein 1 pseudogene NW_004955443 1854504 1855448 - 102027121 AGCD01038147 MODEL 8820839 protein-coding LOC102030227 protein lifeguard 1 NW_004955432 9370066 9386144 - 102030227 AGCD01030904;GBDF01043901;XM_005388012;XM_005388013;XM_005388014;XM_005388015;XM_013515934;XM_013515935 XP_005388069;XP_005388070;XP_005388071;XP_005388072;XP_013371388;XP_013371389 MODEL 8974777 protein-coding Igip IgA inducing protein NW_004955418 527380 536136 - 102013172 AGCD01018679;GBDI01291441;XM_013512930 XP_013368384 MODEL 8857548 pseudo LOC102009396 kinesin-associated protein 3 pseudogene NW_004955422 9676287 9678648 + 102009396 AGCD01022717 MODEL 10140549 ncrna LOC106147035 uncharacterized LOC106147035 NW_004955513 4889936 4892772 - 106147035 AGCD01066943;GBDF01102266;XR_001231733 MODEL 9016285 protein-coding LOC102021546 NKG2-A/NKG2-B type II integral membrane protein-like NW_004955413 7564558 7569806 + 102021546 AGCD01013823;GBDK01253184;XM_005379621 XP_005379678 MODEL 8957084 protein-coding LOC102003611 BPI fold-containing family C protein-like NW_004957015 28 1202 - 102003611 AGCD01080411;XM_005415219 XP_005415276 MODEL 8985441 protein-coding LOC102012606 dual specificity protein phosphatase 18-like NW_004955453 12279178 12280813 + 102012606 AGCD01044830;XM_013519757 XP_013375211 MODEL 9066760 pseudo LOC102025386 spindlin-1 pseudogene NW_004955433 5076994 5077704 + 102025386 AGCD01031489 MODEL 8897076 protein-coding LOC102006419 intestinal-type alkaline phosphatase-like NW_004955453 3542300 3545477 - 102006419 AGCD01044663;AGCD01044664;XM_013519762 XP_013375216 MODEL 8909102 pseudo LOC102019756 coilin pseudogene NW_004955402 35710345 35712921 + 102019756 AGCD01000896;XM_005372931 MODEL 8967293 protein-coding Spink7 serine peptidase inhibitor Kazal type 7 INVOLVED IN inflammatory response (ortholog); negative regulation of cytokine production involved in inflammatory response (ortholog); FOUND IN extracellular region (ortholog) NW_004955415 5954880 5958319 + 102006340 AGCD01016004;GBDJ01221132;XM_013512295 XP_013367749 MODEL 8983754 protein-coding Paox polyamine oxidase ENCODES a protein that exhibits N(1)-acetylpolyamine oxidase activity (ortholog); polyamine oxidase activity (ortholog); INVOLVED IN intracellular polyamine homeostasis (ortholog); polyamine catabolic process (ortholog); positive regulation of spermidine biosynthetic process (ortholog); PARTICIPATES IN polyamine metabolic pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); lung non-small cell carcinoma (ortholog); stroke (ortholog); FOUND IN peroxisomal matrix (ortholog) NW_004955477 11028488 11038556 + 102006029 AGCD01055714;GBDI01229659;XM_005402069 XP_005402126 MODEL 8752008 protein-coding LOC102026776 olfactory receptor 5G3-like NW_004955511 1902280 1903224 - 102026776 AGCD01066382;XM_005408248 XP_005408305 MODEL 8999777 protein-coding Ybx3 Y-box binding protein 3 ENCODES a protein that exhibits DNA binding (ortholog); mRNA 3'-UTR binding (ortholog); ribonucleoprotein complex binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); cellular hyperosmotic response (ortholog); cellular response to tumor necrosis factor (ortholog); ASSOCIATED WITH Optic Nerve Injuries (ortholog); FOUND IN bicellular tight junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955413 7090085 7111542 + 102020236 AGCD01013798;AGCD01013799;AGCD01013800;GBBH01032211;GBCE01028229;XM_013511652 XP_013367106 MODEL 8825967 protein-coding Slc35f6 solute carrier family 35 member F6 INVOLVED IN negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway (ortholog); positive regulation of cell population proliferation (ortholog); FOUND IN lysosomal membrane (ortholog); lysosome (ortholog); mitochondrion (ortholog) NW_004955469 8774225 8787549 + 102015500 AGCD01052481;AGCD01052482;GBDF01281490;XM_005400439 XP_005400496 MODEL 8780558 pseudo LOC102029507 spermatid perinuclear RNA-binding protein pseudogene NW_004955474 2456536 2458357 + 102029507 AGCD01054294 MODEL 9066919 protein-coding LOC102007509 uncharacterized LOC102007509 NW_004955406 41604564 41614798 + 102007509 AGCD01006688;GBDI01238964;XM_013523033;XR_001237101;XR_001237102;XR_001237104;XR_001237106;XR_001237107 XP_013378487 MODEL 8840211 pseudo LOC102018214 retinal dehydrogenase 1-like NW_004955434 130312 183170 - 102018214 AGCD01031996;AGCD01031997;AGCD01031998;AGCD01031999;AGCD01032000 MODEL 8804924 protein-coding LOC102010212 olfactory receptor 2B6-like NW_004955576 1169060 1171950 - 102010212 AGCD01075362;XM_005413949 XP_005414006 MODEL 8886306 ncrna LOC102006049 uncharacterized LOC102006049 NW_004955425 7368402 7403190 + 102006049 AGCD01025384;GBDF01196098;XR_001234261;XR_001234262;XR_001234263;XR_001234264 MODEL 8920154 pseudo LOC102028448 protein kinase C iota type pseudogene NW_004955430 13541565 13543447 - 102028448 AGCD01029535 MODEL 8954909 ncrna LOC102023945 uncharacterized LOC102023945 NW_004955515 4861093 4881722 - 102023945 AGCD01067332;GBDI01105897;XR_001231796;XR_001231797;XR_001231798;XR_264526 MODEL 10099500 ncrna LOC106149324 uncharacterized LOC106149324 NW_004955443 8769106 8794029 + 106149324 AGCD01038336;AGCD01038337;XR_001235440;XR_001235441 MODEL 10066158 ncrna LOC106146363 uncharacterized LOC106146363 NW_004955476 6488661 6492214 + 106146363 AGCD01055332;GBDJ01415598;XR_001230775;XR_001230776 MODEL 8780245 protein-coding Tnip3 TNFAIP3 interacting protein 3 ENCODES a protein that exhibits polyubiquitin modification-dependent protein binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); MyD88-independent toll-like receptor signaling pathway (ortholog); negative regulation of canonical NF-kappaB signal transduction (ortholog) NW_004955428 19479633 19511738 + 102020468 AGCD01028092;GBDI01155280;XM_013515238;XM_013515239;XM_013515240;XM_013515241;XM_013515242;XM_013515243 XP_013370692;XP_013370693;XP_013370694;XP_013370695;XP_013370696;XP_013370697 MODEL 8802708 protein-coding LOC102004649 N-formyl peptide receptor 2-like NW_004955558 759900 765019 - 102004649 AGCD01073389;XM_013508846 XP_013364300 MODEL 8915898 ncrna LOC102030229 uncharacterized LOC102030229 NW_004955434 3111155 3136560 - 102030229 AGCD01032124;GBDF01303441;XR_261609 MODEL 10179801 ncrna LOC106150143 uncharacterized LOC106150143 NW_004955466 8152401 8155131 - 106150143 AGCD01050979;XR_001236773;XR_001236774 MODEL 8862851 protein-coding Tsnax translin associated factor X ENCODES a protein that exhibits A2A adenosine receptor binding (ortholog); protein-containing complex binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN siRNA processing (ortholog); FOUND IN cytoplasm (ortholog); endoribonuclease complex (ortholog); nucleoplasm (ortholog) NW_004955492 7304982 7335512 - 102006784 AGCD01060784;AGCD01060785;AGCD01060786;GBDF01124616;XM_005404969;XM_013504735 XP_005405026;XP_013360189 MODEL 10272818 protein-coding LOC106146488 translation initiation factor IF-2-like NW_004955481 851786 852659 - 106146488 AGCD01056814;GBBH01027226;XM_013503462 XP_013358916 MODEL 8933752 protein-coding Polr3g RNA polymerase III subunit G ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN cell population proliferation (ortholog); positive regulation of innate immune response (ortholog); positive regulation of interferon-beta production (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH autistic disorder (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955418 21116812 21149818 - 102027072 AGCD01019257;AGCD01019258;AGCD01019259;AGCD01019260;GBDK01321607;XM_005382276;XM_005382277;XM_005382278;XM_005382279;XM_013512972 XP_005382333;XP_005382334;XP_005382335;XP_005382336;XP_013368426 MODEL 9037414 protein-coding Etv4 ETS variant transcription factor 4 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN branching involved in mammary gland duct morphogenesis (ortholog); motor neuron axon guidance (ortholog); negative regulation of mammary gland epithelial cell proliferation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); hereditary breast ovarian cancer syndrome (ortholog); Neoplasm Metastasis (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955451 16965404 16976503 - 102004880 AGCD01043714;AGCD01043715;GBBH01050865;GBBH01050866;XM_013519235;XM_013519236 XP_013374689;XP_013374690 MODEL 8815848 protein-coding Lect2 leukocyte cell derived chemotaxin 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN negative regulation of Wnt signaling pathway (ortholog); ASSOCIATED WITH Carcinoma, Lewis Lung (ortholog); Experimental Neoplasms (ortholog); hepatocellular carcinoma (ortholog); FOUND IN cytosol (ortholog) NW_004955408 31016955 31068998 - 102014217 AGCD01008819;AGCD01008820;AGCD01008821;GBCB01037968;XM_005376494;XM_013506809 XP_005376551;XP_013362263 MODEL 8966321 protein-coding LOC102025709 small nuclear ribonucleoprotein F-like NW_004955429 15587571 15588157 + 102025709 AGCD01028808;XM_013515465 XP_013370919 MODEL 39132799 snorna SNORD62A Small nucleolar RNA SNORD62 8854830 protein-coding Tfpt TCF3 fusion partner ENCODES a protein that exhibits DNA binding (ortholog); protein kinase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN apoptotic process (ortholog); apoptotic signaling pathway (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; FOUND IN actin filament (ortholog); cytoplasm (ortholog); Ino80 complex (ortholog) NW_004955604 136357 139799 + 102020864 AGCD01076864;AGCD01076865;GBBH01188177;XM_013510092 XP_013365546 MODEL 8974637 protein-coding Bok BCL2 family apoptosis regulator BOK ENCODES a protein that exhibits BH domain binding (ortholog); protein dimerization activity (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN apoptotic process (ortholog); cellular component disassembly involved in execution phase of apoptosis (ortholog); intrinsic apoptotic signaling pathway by p53 class mediator (ortholog); PARTICIPATES IN intrinsic apoptotic pathway; ASSOCIATED WITH hydrocephalus (ortholog); FOUND IN cis-Golgi network membrane (ortholog); cytoplasm (ortholog); early endosome membrane (ortholog) NW_004955542 224471 232401 - 102007278 AGCD01071464;GBCQ01010517;GBDI01072356;XM_005411124 XP_005411181 MODEL 8783559 ncrna LOC102012158 uncharacterized LOC102012158 NW_004955407 18483756 18702374 - 102012158 AGCD01007271;AGCD01007272;AGCD01007273;AGCD01007274;AGCD01007275;GBDF01046486;XR_001231621;XR_001231624;XR_001231625;XR_001231626;XR_001231627;XR_001231628;XR_259571 MODEL 8797992 pseudo LOC102024292 transcription initiation factor TFIID subunit 2-like NW_004955448 12293896 12314391 - 102024292 AGCD01041546 MODEL 8776962 protein-coding Scn2b sodium voltage-gated channel beta subunit 2 ENCODES a protein that exhibits sodium channel regulator activity (ortholog); voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN cardiac conduction (ortholog); cardiac muscle cell action potential involved in contraction (ortholog); cardiac muscle contraction (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); Experimental Seizures (ortholog); Familial Atrial Fibrillation 14 (ortholog); FOUND IN axon initial segment (ortholog); node of Ranvier (ortholog); plasma membrane (ortholog) NW_004955412 19341008 19353563 - 102006439 AGCD01012950;GBCE01076512;XM_005378230;XM_013511243 XP_005378287;XP_013366697 MODEL 8813366 protein-coding Nedd4l NEDD4 like E3 ubiquitin protein ligase ENCODES a protein that exhibits potassium channel inhibitor activity (ortholog); sodium channel inhibitor activity (ortholog); sodium channel regulator activity (ortholog); INVOLVED IN negative regulation of potassium ion export across plasma membrane (ortholog); negative regulation of potassium ion transmembrane transport (ortholog); negative regulation of protein localization to cell surface (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); cleft palate (ortholog); Developmental Disease (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955402 42339380 42688661 + 102007718 AGCD01001040;AGCD01001041;AGCD01001042;AGCD01001043;AGCD01001044;GBDF01258194;XM_005372981;XM_005372983;XM_005372986;XM_005372988;XM_013510994;XM_013510999;XM_013511005;XM_013511013 XP_005373038;XP_005373040;XP_005373043;XP_005373045;XP_013366448;XP_013366453;XP_013366459;XP_013366467 MODEL 10251905 protein-coding LOC106146753 uncharacterized LOC106146753 NW_004955494 802382 804400 + 106146753 AGCD01061384;GBDI01025536;GBDI01197071;XM_013505013 XP_013360467 MODEL 10098865 ncrna LOC106149325 uncharacterized LOC106149325 NW_004955443 8622306 8631752 - 106149325 AGCD01038330;AGCD01038331;GBDF01179629;XR_001235442;XR_001235443 MODEL 8747424 pseudo LOC102003613 centrosomal protein of 57 kDa pseudogene NW_004955403 17238602 17239548 - 102003613 AGCD01002072 MODEL 8838051 ncrna LOC102009397 uncharacterized LOC102009397 NW_004955423 12414062 12469348 + 102009397 AGCD01023718;GBDK01419002;XR_260967 MODEL 10138677 protein-coding LOC106147036 uncharacterized LOC106147036 NW_004955513 2065438 2068896 - 106147036 AGCD01066868;GBBH01165051;XM_013506573 XP_013362027 MODEL 8864237 ncrna LOC102020784 uncharacterized LOC102020784 NW_004955466 3625098 3632861 + 102020784 AGCD01050797;GBDF01179611;XR_263285 MODEL 8805546 pseudo LOC102003299 epidermal growth factor receptor substrate 15 pseudogene NW_004955449 17953369 17956566 + 102003299 AGCD01042278 MODEL 9020774 protein-coding Iglon5 IgLON family member 5 INVOLVED IN motor behavior (ortholog); neuromuscular process controlling balance (ortholog) NW_004955558 1059263 1066616 - 102013976 AGCD01073413;GBCE01131499;GBDK01125776;XM_013508838 XP_013364292 MODEL 8912126 pseudo LOC102019757 calcyclin-binding protein pseudogene NW_004955593 833159 833718 - 102019757 AGCD01076401 MODEL 8891827 protein-coding LOC102027767 chromosome unknown open reading frame, human C4orf33 NW_004955428 12551441 12583102 - 102027767 AGCD01027929;AGCD01027930;AGCD01027931;GBDI01007793;XM_005386719;XM_005386720;XM_005386721 XP_005386776;XP_005386777;XP_005386778 MODEL 10225357 ncrna LOC106146609 uncharacterized LOC106146609 NW_004955486 5226777 5229649 + 106146609 AGCD01059080;XR_001231121 MODEL 8706603 protein-coding Pkn1 protein kinase N1 ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); histone deacetylase binding (ortholog); INVOLVED IN B cell apoptotic process (ortholog); B cell homeostasis (ortholog); epithelial cell migration (ortholog); ASSOCIATED WITH Neointima (ortholog); FOUND IN cleavage furrow (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955415 33040868 33062753 + 102014448 AGCD01016747;AGCD01016748;GBDK01001917;XM_005381094;XM_005381095;XM_005381096;XM_005381097;XM_005381098;XM_013512169 XP_005381151;XP_005381152;XP_005381153;XP_005381154;XP_005381155;XP_013367623 MODEL 8948457 protein-coding LOC102026780 uncharacterized LOC102026780 NW_004955513 4514097 4520775 - 102026780 AGCD01066930;GBDF01067866;XM_013506581 XP_013362035 MODEL 8752335 protein-coding Krt6a keratin 6A INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); defense response to Gram-positive bacterium (ortholog); intermediate filament organization (ortholog); ASSOCIATED WITH genetic disease (ortholog); pachyonychia congenita (ortholog); Pachyonychia Congenita 3 (ortholog); FOUND IN intermediate filament cytoskeleton (ortholog) NW_004955547 2902962 2907670 - 102010416 AGCD01072301;GBDI01262090;XM_005411944 XP_005412001 MODEL 8814360 protein-coding Phlda2 pleckstrin homology like domain family A member 2 INVOLVED IN animal organ morphogenesis (ortholog); carbohydrate storage (ortholog); placenta development (ortholog); ASSOCIATED WITH COVID-19 (ortholog); lung non-small cell carcinoma (ortholog); osteosarcoma (ortholog) NW_004955422 14617794 14619595 - 102011671 AGCD01022861;GBDJ01182328;XM_005384213 XP_005384270 MODEL 39131343 protein-coding SIT1 signaling threshold regulating transmembrane adaptor 1 9037741 protein-coding Ydjc YdjC chitooligosaccharide deacetylase homolog NW_004955442 17481581 17483858 + 102015669 AGCD01037955;GBDF01253063;XM_005391703 XP_005391760 MODEL 8742100 pseudo LOC102009053 ribosome biogenesis protein BRX1 homolog pseudogene NW_004955416 27989601 28018980 - 102009053 AGCD01017623;XM_005381644;XR_260424;XR_260425;XR_260426;XR_260427;XR_260428 MODEL 8762230 pseudo LOC102015568 PHD finger-like domain-containing protein 5A pseudogene NW_004955437 21029054 21029994 - 102015568 AGCD01034895 MODEL 10172425 ncrna LOC106148125 uncharacterized LOC106148125 NW_004955416 20817902 20821685 - 106148125 AGCD01017468;GBDF01234957;XR_001233289 MODEL 8751649 protein-coding Srsf11 serine and arginine rich splicing factor 11 ENCODES a protein that exhibits identical protein binding (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); myelodysplastic syndrome (ortholog); FOUND IN nuclear speck (ortholog) NW_004955423 21669925 21706260 - 102007445 AGCD01023946;AGCD01023947;GBBH01032130;GBCQ01062255;XM_013514400;XM_013514401;XM_013514402 XP_013369854;XP_013369855;XP_013369856 MODEL 39133665 snrna U4 U4 spliceosomal RNA 9045627 protein-coding Lef1 lymphoid enhancer binding factor 1 ENCODES a protein that exhibits armadillo repeat domain binding (ortholog); beta-catenin binding (ortholog); C2H2 zinc finger domain binding (ortholog); INVOLVED IN alpha-beta T cell differentiation (ortholog); anatomical structure regression (ortholog); animal organ regeneration (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH Animal Disease Models (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); basal cell carcinoma (ortholog); FOUND IN beta-catenin-TCF complex (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955496 1728840 1827749 + 102029309 AGCD01062260;GBCE01113238;XM_005406198;XM_005406199;XM_005406200;XM_005406201;XM_005406202;XM_005406203 XP_005406255;XP_005406256;XP_005406257;XP_005406258;XP_005406259;XP_005406260 MODEL 8973471 protein-coding LOC102021547 olfactory receptor 52K1-like NW_004955414 20116732 20117685 + 102021547 AGCD01015358;XM_005380464 XP_005380521 MODEL 8896758 ncrna LOC102023946 uncharacterized LOC102023946 NW_004955517 2233811 2331769 + 102023946 AGCD01067622;AGCD01067623;GBDI01167785;XR_001231827;XR_001231828;XR_001231829;XR_001231830;XR_264551;XR_264552 MODEL 9003445 pseudo LOC102024297 40S ribosomal protein S24 pseudogene NW_004955728 13674 14067 + 102024297 AGCD01078208 MODEL 9001458 protein-coding Spink8 serine peptidase inhibitor Kazal type 8 (putative) NW_004955420 24283223 24298948 + 102007666 AGCD01021288;AGCD01021289;AGCD01021290;GBCB01057695;GBCQ01003584;XM_013513475 XP_013368929 MODEL 8712820 protein-coding Papln papilin, proteoglycan like sulfated glycoprotein FOUND IN basement membrane (ortholog) NW_004955523 2077496 2104826 - 102017377 AGCD01068556;AGCD01068557;GBBH01004337;XM_013507154;XM_013507155;XM_013507156;XM_013507157;XM_013507158 XP_013362608;XP_013362609;XP_013362610;XP_013362611;XP_013362612 MODEL 9050164 pseudo LOC102029509 ubiquitin-conjugating enzyme E2 L3 pseudogene NW_004955477 2271062 2271749 + 102029509 AGCD01055518;XM_005401968;XM_005401969 MODEL 8890332 protein-coding LOC102007511 immunoglobulin omega chain-like NW_004955455 6477568 6478007 + 102007511 AGCD01045797;GBDI01376516;XM_013520310 XP_013375764 MODEL 8760907 ncrna LOC102027123 uncharacterized LOC102027123 NW_004955446 6423181 6434207 - 102027123 AGCD01040097;GBCE01059194;XR_001235694 MODEL 10313121 ncrna LOC106146610 uncharacterized LOC106146610 NW_004955486 5336289 5338297 + 106146610 AGCD01059083;XR_001231122 MODEL 8988961 protein-coding Slc35g1 solute carrier family 35 member G1 ENCODES a protein that exhibits citrate transmembrane transporter activity (ortholog); INVOLVED IN calcium ion export across plasma membrane (ortholog); intestinal absorption (ortholog); regulation of cytosolic calcium ion concentration (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN basolateral plasma membrane (ortholog); endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955507 423354 428051 + 102004094 AGCD01065472;GBBH01041247;XM_013506161 XP_013361615 MODEL 8704724 protein-coding Tsnaxip1 translin associated factor X interacting protein 1 ASSOCIATED WITH prostate cancer (ortholog); FOUND IN cytoplasm (ortholog) NW_004955484 8868022 8889089 - 102024010 AGCD01058398;AGCD01058399;AGCD01058400;GBDK01187927;XM_005403624;XM_005403625;XM_013503887;XM_013503888 XP_005403681;XP_005403682;XP_013359341;XP_013359342 MODEL 8852628 ncrna LOC102010215 uncharacterized LOC102010215 NW_004955449 8016115 8072779 - 102010215 AGCD01042007;AGCD01042008;XR_262494 MODEL 9014271 ncrna LOC102006421 uncharacterized LOC102006421 NW_004955455 10924743 10925491 + 102006421 AGCD01045967;GBDF01002624;XR_262854 MODEL 8922699 ncrna LOC102025389 uncharacterized LOC102025389 NW_004955435 618650 622278 - 102025389 AGCD01032727;GBDF01254184;XR_261650 MODEL 8930811 protein-coding Pkn2 protein kinase N2 ENCODES a protein that exhibits histone deacetylase binding (ortholog); kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN apical junction assembly (ortholog); epithelial cell migration (ortholog); positive regulation of cytokinesis (ortholog); FOUND IN anchoring junction (ortholog); apical junction complex (ortholog); cleavage furrow (ortholog) NW_004955423 5467017 5575435 - 102024815 AGCD01023561;AGCD01023562;AGCD01023563;GBDI01221436;XM_013514513 XP_013369967 MODEL 8833033 protein-coding LOC102012609 ras-related protein Rap-1A NW_004955407 658498 659795 + 102012609 AGCD01006756;XM_005375497 XP_005375554 MODEL 8970669 protein-coding Krt7 keratin 7 ASSOCIATED WITH cholangiocarcinoma (ortholog); Chronic Hepatitis (ortholog); Copper-Overload Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955547 2584425 2598770 + 102006396 AGCD01072285;AGCD01072286;GBCQ01139837;XM_005411933 XP_005411990 MODEL 9041267 protein-coding Tfr2 transferrin receptor 2 ENCODES a protein that exhibits co-receptor binding (ortholog); transferrin receptor activity (ortholog); INVOLVED IN acute-phase response (ortholog); cellular response to iron ion (ortholog); endocytic iron import into cell (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); beta thalassemia (ortholog); genetic disease (ortholog); FOUND IN cytoplasmic vesicle (ortholog); external side of plasma membrane (ortholog); HFE-transferrin receptor complex (ortholog) NW_004955573 272315 289227 + 102017520 AGCD01074972;AGCD01074973;GBDF01155965;XM_005413705;XM_005413706;XM_005413707;XM_005413708 XP_005413762;XP_005413763;XP_005413764;XP_005413765 MODEL 8763885 protein-coding Tnk1 tyrosine kinase non receptor 1 ENCODES a protein that exhibits ATP binding (ortholog); non-membrane spanning protein tyrosine kinase activity (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN negative regulation of cell growth (ortholog); negative regulation of Ras protein signal transduction (ortholog); protein autophosphorylation (ortholog); ASSOCIATED WITH autosomal recessive intellectual developmental disorder 54 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955467 9539693 9547419 - 102016463 AGCD01051516;GBDK01237114;XM_005399502;XM_013522120;XM_013522121 XP_005399559;XP_013377574;XP_013377575 MODEL 8814863 pseudo LOC102004651 protein ELYS-like NW_004955443 9345582 9368751 - 102004651 AGCD01038349;AGCD01038350;AGCD01038351;AGCD01038352 MODEL 10303095 ncrna LOC106150144 uncharacterized LOC106150144 NW_004955466 4588071 4590028 + 106150144 AGCD01050834;XR_001236775;XR_001236776 MODEL 8927430 protein-coding Scn3a sodium voltage-gated channel alpha subunit 3 ENCODES a protein that exhibits calmodulin binding (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN behavioral response to pain (ortholog); cellular response to antibiotic (ortholog); membrane depolarization during action potential (ortholog); ASSOCIATED WITH complex cortical dysplasia with other brain malformations 14B (ortholog); complex partial epilepsy (ortholog); developmental and epileptic encephalopathy (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); membrane (ortholog) NW_004955449 8896454 9009304 + 102013357 AGCD01042030;AGCD01042031;XM_005393300;XM_005393301;XM_013518814 XP_005393357;XP_005393358;XP_013374268 MODEL 10235047 ncrna LOC106146490 uncharacterized LOC106146490 NW_004955481 5848230 5858059 + 106146490 AGCD01057003;XR_001230938 MODEL 9049971 pseudo LOC102019758 alpha-enolase pseudogene NW_004955597 152521 155630 + 102019758 AGCD01076545 MODEL 8705218 pseudo LOC102018215 60S ribosomal protein L7 pseudogene NW_004955521 4288386 4289394 - 102018215 AGCD01068259 MODEL 8971519 pseudo LOC102006050 nicotinamide phosphoribosyltransferase-like NW_004955426 5308768 5326304 - 102006050 AGCD01026121 MODEL 8975102 protein-coding LOC102025713 microtubule-associated tumor suppressor candidate 2 NW_004955431 16318818 16394463 - 102025713 AGCD01030377;GBDF01251344;XM_005387754 XP_005387811 MODEL 8773472 protein-coding Sit1 signaling threshold regulating transmembrane adaptor 1 ENCODES a protein that exhibits kinase binding (ortholog); INVOLVED IN regulation of T cell activation (ortholog); FOUND IN plasma membrane (ortholog) NW_004955472 643923 645802 + 102010991 AGCD01053344;AGCD01053345;GBBH01063625;GBCE01055336;XM_005401179 XP_005401236 MODEL 10095117 ncrna LOC106146364 uncharacterized LOC106146364 NW_004955476 6499969 6504332 - 106146364 AGCD01055332;XR_001230777 MODEL 8793239 protein-coding Phlda3 pleckstrin homology like domain family A member 3 ENCODES a protein that exhibits phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); phosphatidylinositol-3,4-bisphosphate binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH myocardial infarction (ortholog); Myocardial Reperfusion Injury (ortholog); FOUND IN plasma membrane (ortholog) NW_004955406 37579006 37582230 - 102016017 AGCD01006576;GBDI01066919;XM_005375183 XP_005375240 MODEL 9054789 ncrna LOC102030230 uncharacterized LOC102030230 NW_004955434 22876450 22880025 + 102030230 AGCD01032688;GBDF01049336;XR_261641 MODEL 10343511 ncrna LOC106146754 uncharacterized LOC106146754 NW_004955494 846630 847820 - 106146754 AGCD01061386;GBDF01039041;XR_001231323 MODEL 10220377 ncrna LOC106149326 uncharacterized LOC106149326 NW_004955443 15389183 15395512 + 106149326 AGCD01038538;GBDF01289574;XR_001235450 MODEL 39131516 protein-coding SRSF12 serine and arginine rich splicing factor 12 8960397 ncrna LOC102006426 uncharacterized LOC102006426 NW_004955409 9876860 10068894 - 102006426 AGCD01009449;AGCD01009450;AGCD01009451;AGCD01009452;AGCD01009453;AGCD01009454;AGCD01009455;AGCD01009456;GBDF01306880;XR_001232611;XR_001232612;XR_001232613 MODEL 8844786 pseudo LOC102009401 CGG triplet repeat-binding protein 1-like NW_004955503 3186612 3188685 + 102009401 AGCD01064619 MODEL 8752738 pseudo LOC102027768 chondroitin sulfate synthase 1-like NW_004955506 5516083 5518742 + 102027768 AGCD01065369 MODEL 8842062 ncrna LOC102003300 uncharacterized LOC102003300 NW_004955588 694209 720110 + 102003300 AGCD01076118;AGCD01076119;GBDF01073805;XR_001232529;XR_265119 MODEL 39131432 protein-coding IGLV2-33 immunoglobulin lambda variable 2-33 (non-functional) 8788954 protein-coding Polr3gl RNA polymerase III subunit GL ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN transcription by RNA polymerase III (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH Dwarfism (ortholog); hyperostosis (ortholog); SHORT STATURE, OLIGODONTIA, DYSMORPHIC FACIES, AND MOTOR DELAY (ortholog); FOUND IN nucleus (ortholog); RNA polymerase III complex (ortholog) NW_004955568 120475 129990 - 102030133 AGCD01074503;GBDJ01234667;XM_005413422;XM_005413423;XM_013509352;XM_013509353 XP_005413479;XP_005413480;XP_013364806;XP_013364807 MODEL 8772905 ncrna LOC102026781 uncharacterized LOC102026781 NW_004955514 5340045 5342179 + 102026781 AGCD01067151;GBDF01209551;XR_264516 MODEL 8939204 protein-coding LOC102028449 targeting protein for Xklp2-like NW_004955512 1984234 2025783 + 102028449 AGCD01066661;AGCD01066662;AGCD01066663;AGCD01066664;AGCD01066665;GBDF01113712;XM_013506542;XM_013506543;XM_013506544 XP_013361996;XP_013361997;XP_013361998 MODEL 151707882 snorna SNORD65 small nucleolar RNA, C/D box 65 8754620 protein-coding Spint1 serine peptidase inhibitor, Kunitz type 1 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN branching involved in labyrinthine layer morphogenesis (ortholog); cellular response to BMP stimulus (ortholog); embryonic placenta development (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); biliary atresia (ortholog); breast cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); plasma membrane (ortholog) NW_004955416 7715536 7728759 + 102028531 AGCD01017005;AGCD01017006;AGCD01017007;GBDK01070594;XM_005381266;XM_013512623;XM_013512624;XM_013512625 XP_005381323;XP_013368077;XP_013368078;XP_013368079 MODEL 9060726 protein-coding LOC102009054 uncharacterized LOC102009054 NW_004955416 11049189 11057164 - 102009054 AGCD01017171;AGCD01017172;GBDF01186388;XM_005381692 XP_005381749 MODEL 8710956 pseudo LOC102029510 39S ribosomal protein L33, mitochondrial-like NW_004955478 10474275 10474974 + 102029510 AGCD01056134 MODEL 8914868 protein-coding LOC102012159 keratin-associated protein 11-1 NW_004955407 30616573 30617451 - 102012159 AGCD01007639;XM_005375656 XP_005375713 MODEL 9056595 protein-coding LOC102015573 transmembrane protease serine 9-like NW_004955559 316936 347247 + 102015573 AGCD01073574;AGCD01073575;AGCD01073576;AGCD01073577;AGCD01073578;XM_005412968 XP_005413025 MODEL 8975867 pseudo LOC102027126 UMP-CMP kinase pseudogene NW_004955448 1975338 1975960 + 102027126 AGCD01041272;XM_005393014 MODEL 8736602 protein-coding Bola1 bolA family member 1 FOUND IN iron-sulfur cluster assembly complex (ortholog); mitochondrion (ortholog) NW_004955413 850781 851887 - 102022579 AGCD01013491;GBCE01167501;XM_005378710 XP_005378767 MODEL 8861004 ncrna LOC102018635 uncharacterized LOC102018635 NW_004955433 21104127 21129938 + 102018635 AGCD01031916;GBDJ01222197;XR_261603 MODEL 9020574 protein-coding Nedd8 NEDD8 ubiquitin like modifier ENCODES a protein that exhibits ubiquitin protein ligase binding (ortholog); INVOLVED IN cellular response to camptothecin (ortholog); intracellular protein localization (ortholog); protein neddylation (ortholog); PARTICIPATES IN neddylation pathway; p53 signaling pathway; proteasome degradation pathway involving cullin-dependent ubiquitin ligases; ASSOCIATED WITH alcohol-associated liver disease (ortholog); malignant astrocytoma (ortholog); Parkinson's disease (ortholog); FOUND IN glutamatergic synapse (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955409 36173533 36182444 + 102005448 AGCD01010450;GBDF01043770;XM_005377023 XP_005377080 MODEL 8969041 pseudo LOC102025391 synapse-associated protein 1 pseudogene NW_004955529 271045 272081 - 102025391 AGCD01069627 MODEL 39131342 protein-coding LEKR1 leucine, glutamate and lysine rich 1 10092725 protein-coding LOC106147037 skin secretory protein xP2-like NW_004955513 3288308 3311868 - 106147037 AGCD01066900;AGCD01066901;XM_013506576 XP_013362030 MODEL 8811696 ncrna LOC102025714 uncharacterized LOC102025714 NW_004955433 4763853 4765942 - 102025714 AGCD01031478;GBDK01025920;XR_261556 MODEL 8966967 protein-coding LOC102020786 olfactory receptor 10S1-like NW_004955412 24624781 24625770 - 102020786 AGCD01013118;XM_005378632 XP_005378689 MODEL 8969409 protein-coding Krt71 keratin 71 INVOLVED IN hair follicle morphogenesis (ortholog); intermediate filament organization (ortholog); ASSOCIATED WITH alopecia (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN keratin filament (ortholog) NW_004955547 2953853 2962711 - 102011480 AGCD01072302;GBDF01236389;XM_005411948 XP_005412005 MODEL 8768061 ncrna LOC102024299 uncharacterized LOC102024299 NW_004956553 502 2571 + 102024299 AGCD01079788;GBCQ01187473;XR_265210 MODEL 9054134 protein-coding LOC102004653 olfactory receptor 7G2-like NW_004955563 384107 385063 - 102004653 AGCD01074064;XM_005413097 XP_005413154 MODEL 10295355 ncrna LOC106150145 uncharacterized LOC106150145 NW_004955466 8514351 8520517 - 106150145 AGCD01050992;GBDK01408031;XR_001236777 MODEL 8765517 protein-coding Etv5 ETS variant transcription factor 5 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); locomotory behavior (ortholog); male germ-line stem cell asymmetric division (ortholog); ASSOCIATED WITH Neoplastic Processes (ortholog); Prostatic Neoplasms (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955420 21503820 21576539 + 102008001 AGCD01021138;AGCD01021139;AGCD01021140;AGCD01021141;GBDF01249226;XM_013513339 XP_013368793 MODEL 10167883 ncrna LOC106146491 uncharacterized LOC106146491 NW_004955481 6488971 6499233 - 106146491 AGCD01057029;GBDK01213251;XR_001230939;XR_001230940;XR_001230941;XR_001230942;XR_001230943;XR_001230944 MODEL 8709149 protein-coding LOC102007512 keratin-associated protein 10-7-like NW_004955407 41555800 41557892 - 102007512 AGCD01007870;XM_005375893 XP_005375950 MODEL 9022457 protein-coding Papola poly(A) polymerase alpha ENCODES a protein that exhibits poly(A) RNA polymerase activity (ortholog); INVOLVED IN co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway (ortholog); cytosolic mRNA polyadenylation (ortholog); mRNA 3'-end processing (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955438 18267515 18334379 + 102023849 AGCD01035470;AGCD01035471;GBDF01252873;XM_005390400;XM_005390401;XM_005390404;XR_261947 XP_005390457;XP_005390458;XP_005390461 MODEL 10384357 pseudo LOC102010218 Ig heavy chain V-III region 23-like NW_004957635 267 750 + 102010218 AGCD01081031 MODEL 10095141 ncrna LOC106148126 uncharacterized LOC106148126 NW_004955416 2084767 2089472 + 106148126 AGCD01016846;AGCD01016847;GBDF01132562;XR_001233290 MODEL 8849411 protein-coding Tspan1 tetraspanin 1 INVOLVED IN protein stabilization (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2O (ortholog); congenital muscular dystrophy (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955464 12089589 12095000 - 102024321 AGCD01050180;GBBH01003796;XM_005398688 XP_005398745 MODEL 8959622 ncrna LOC102026783 uncharacterized LOC102026783 NW_004955517 4148759 4153236 + 102026783 AGCD01067687;GBDF01122720;XR_264557 MODEL 9061329 ncrna LOC102003614 uncharacterized LOC102003614 NW_004955404 19125609 19150116 - 102003614 AGCD01003639;GBDK01198293;XR_259318 MODEL 8938220 ncrna LOC102012610 uncharacterized LOC102012610 NW_004955407 39310523 39313107 + 102012610 AGCD01007824;GBBH01151673;XR_259626 MODEL 8865984 ncrna LOC102021550 uncharacterized LOC102021550 NW_004955415 14023924 14024705 + 102021550 AGCD01016284;GBDF01000432;XR_260290 MODEL 8884389 protein-coding Siva1 SIVA1 apoptosis inducing factor ENCODES a protein that exhibits CD27 receptor binding (ortholog); tumor necrosis factor receptor binding (ortholog); virus receptor activity (ortholog); INVOLVED IN activation-induced cell death of T cells (ortholog); extrinsic apoptotic signaling pathway (ortholog); intrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH Coxsackievirus Infections (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955538 3197983 3202782 + 102027012 AGCD01071153;GBCB01000476;XM_005410841 XP_005410898 MODEL 8784892 protein-coding LOC102030232 uncharacterized LOC102030232 NW_004955524 2791262 2795308 - 102030232 AGCD01068836;GBDK01226327;XM_005409595;XM_005409596 XP_005409652;XP_005409653 MODEL 8723332 protein-coding Tfrc transferrin receptor ENCODES a protein that exhibits double-stranded RNA binding (ortholog); Hsp70 protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN acute-phase response (ortholog); cell surface receptor signaling pathway (ortholog); cellular response to leukemia inhibitory factor (ortholog); PARTICIPATES IN forkhead class A signaling pathway; hypoxia inducible factor pathway; iron uptake pathway; ASSOCIATED WITH Acute-Phase Reaction (ortholog); Arenaviridae infectious disease (ortholog); autism spectrum disorder (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); clathrin-coated pit (ortholog) NW_004955420 12348392 12372714 - 102008628 AGCD01020861;GBCB01056114;GBCQ01039332;XM_005383119 XP_005383176 MODEL 9040384 protein-coding Phldb1 pleckstrin homology like domain family B member 1 INVOLVED IN basement membrane organization (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); high grade glioma (ortholog); osteogenesis imperfecta type 23 (ortholog); FOUND IN basal cortex (ortholog) NW_004955412 19754997 19800984 + 102013398 AGCD01012977;AGCD01012978;GBCQ01037579;XM_005378253;XM_005378254;XM_005378255;XM_005378256;XM_005378257;XM_005378258;XM_005378259;XM_005378260;XM_005378261;XM_005378262;XM_005378263;XM_005378265;XM_005378268 XP_005378310;XP_005378311;XP_005378312;XP_005378313;XP_005378314;XP_005378315;XP_005378316;XP_005378317;XP_005378318;XP_005378319;XP_005378320;XP_005378322;XP_005378325 MODEL 9031590 protein-coding Tnk2 tyrosine kinase non receptor 2 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); identical protein binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN phosphorylation (ortholog); positive regulation of peptidyl-tyrosine phosphorylation (ortholog); regulation of clathrin-dependent endocytosis (ortholog); ASSOCIATED WITH Autosomal Recessive Infantile Epilepsy (ortholog); developmental and epileptic encephalopathy (ortholog); epilepsy (ortholog); FOUND IN axon (ortholog); clathrin-coated pit (ortholog); clathrin-coated vesicle (ortholog) NW_004955420 12302463 12337976 - 102004391 AGCD01020860;GBDF01285573;XM_005383103;XM_005383108;XM_005383112;XM_005383114;XM_005383118;XM_013513540;XM_013513541;XM_013513542;XM_013513543;XM_013513544;XM_013513545;XM_013513546;XM_013513547;XM_013513548;XM_013513549 XP_005383160;XP_005383165;XP_005383169;XP_005383171;XP_005383175;XP_013368994;XP_013368995;XP_013368996;XP_013368997;XP_013368998;XP_013368999;XP_013369000;XP_013369001;XP_013369002;XP_013369003 MODEL 8844699 ncrna LOC102006427 uncharacterized LOC102006427 NW_004955459 3352170 3356325 - 102006427 AGCD01048013;XR_263014 MODEL 8857878 protein-coding LOC102018217 ubiquitin-conjugating enzyme E2 D2-like NW_004955525 1483494 1484306 + 102018217 AGCD01069039;XM_005409723;XM_005409724;XM_005409725 XP_005409780;XP_005409781;XP_005409782 MODEL 8741113 protein-coding LOC102019760 disintegrin and metalloproteinase domain-containing protein 20-like NW_004955403 32084751 32088414 - 102019760 AGCD01002429;GBDF01008556;XM_005373527 XP_005373584 MODEL 10277536 protein-coding LOC106146611 uncharacterized LOC106146611 NW_004955486 1440259 1455232 + 106146611 AGCD01058955;GBBH01043989;XM_013504247 XP_013359701 MODEL 9058225 protein-coding LOC102024300 keratin-associated protein 4-1-like NW_004955451 15611349 15612053 - 102024300 AGCD01043621;AGCD01043622;XM_013519128 XP_013374582 MODEL 8749852 protein-coding Slc35g2 solute carrier family 35 member G2 ASSOCIATED WITH melanoma (ortholog); FOUND IN Golgi apparatus (ortholog); plasma membrane (ortholog); synaptic vesicle membrane (ortholog) NW_004955501 1974126 1998547 - 102017794 AGCD01064065;AGCD01064066;AGCD01064067;GBCQ01014308;XM_005406778 XP_005406835 MODEL 8804137 protein-coding Krt76 keratin 76 INVOLVED IN epidermis development (ortholog); pigmentation (ortholog); sebaceous gland development (ortholog) NW_004955458 74368 82778 - 102007308 AGCD01047106;XM_005397127;XM_013520810 XP_005397184;XP_013376264 MODEL 8925909 protein-coding LOC102028451 guanylate cyclase 2G-like NW_004955431 17427147 17469419 - 102028451 AGCD01030408;GBDK01092641;XM_013515734 XP_013371188 MODEL 8967097 ncrna LOC102026785 uncharacterized LOC102026785 NW_004955522 3202163 3219905 - 102026785 AGCD01068381;GBDF01253529;XR_001231910;XR_264619 MODEL 9043618 ncrna LOC102003615 uncharacterized LOC102003615 NW_004955405 22571094 22618074 - 102003615 AGCD01005096;AGCD01005097;GBDF01187374;XR_001235464;XR_001235465 MODEL 10381402 pseudo LOC106149327 glyceraldehyde-3-phosphate dehydrogenase pseudogene NW_004955443 18904193 18914798 + 106149327 AGCD01038615 MODEL 8742682 protein-coding Yeats2 YEATS domain containing 2 ENCODES a protein that exhibits histone binding (ortholog); histone reader activity (ortholog); modification-dependent protein binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of cell cycle (ortholog); regulation of cell division (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH breast ductal carcinoma (ortholog); Disease Progression (ortholog); familial adult myoclonic epilepsy (ortholog); FOUND IN ATAC complex (ortholog); mitotic spindle (ortholog); nucleus (ortholog) NW_004955420 23590636 23666689 - 102029974 AGCD01021249;AGCD01021250;AGCD01021251;GBDJ01062988;XM_005383359;XM_005383360;XM_005383361 XP_005383416;XP_005383417;XP_005383418 MODEL 8988002 pseudo LOC102027770 ferritin light chain pseudogene NW_004955508 1835711 1836399 + 102027770 AGCD01065774 MODEL 8991387 ncrna LOC102030235 uncharacterized LOC102030235 NW_004955533 3856642 3867009 - 102030235 AGCD01070430;XR_264753 MODEL 8970537 protein-coding Scn3b sodium voltage-gated channel beta subunit 3 ENCODES a protein that exhibits sodium channel regulator activity (ortholog); transmembrane transporter binding (ortholog); voltage-gated sodium channel activity involved in cardiac muscle cell action potential (ortholog); INVOLVED IN atrial cardiac muscle cell action potential (ortholog); cardiac conduction (ortholog); cardiac muscle cell action potential involved in contraction (ortholog); ASSOCIATED WITH brain edema (ortholog); Brugada syndrome (ortholog); Brugada syndrome 7 (ortholog); FOUND IN plasma membrane (ortholog); voltage-gated sodium channel complex (ortholog); Z disc (ortholog) NW_004955412 24391764 24412912 - 102025668 AGCD01013112;AGCD01013113;GBCB01027943;XM_005378393;XM_005378394;XM_005378395 XP_005378450;XP_005378451;XP_005378452 MODEL 8737908 pseudo LOC102003301 60S ribosomal protein L9 pseudogene NW_004955402 38686017 38686662 + 102003301 AGCD01000966 MODEL 153211027 protein-coding IGLV3-1 immunoglobulin lambda variable 3-1 8986522 protein-coding LOC102020787 uncharacterized LOC102020787 NW_004955467 9583663 9587823 - 102020787 AGCD01051519;GBDK01413799;XM_005399519;XM_013522123;XM_013522124;XM_013522125;XM_013522127 XP_005399576;XP_013377577;XP_013377578;XP_013377579;XP_013377581 MODEL 39133666 snrna U4 U4 spliceosomal RNA 8792405 pseudo LOC102009055 60S ribosomal protein L24 pseudogene NW_004955481 3914939 3917042 - 102009055 AGCD01056922 MODEL 10203571 pseudo LOC106150146 heterogeneous nuclear ribonucleoproteins A2/B1-like NW_004955466 12253833 12254265 + 106150146 AGCD01051116 MODEL 8748192 pseudo LOC102007514 COMM domain-containing protein 1-like NW_004955407 20893031 20899078 - 102007514 AGCD01007345 MODEL 39133772 snorna SNORD67 small nucleolar RNA, C/D box 67 8726389 pseudo LOC102023948 histone acetyltransferase KAT2B pseudogene NW_004955525 2539956 2542715 + 102023948 AGCD01069098 MODEL 10142579 ncrna LOC106146365 uncharacterized LOC106146365 NW_004955476 10547992 10558593 + 106146365 AGCD01055424;GBDJ01408155;XR_001230778 MODEL 8935333 pseudo LOC102015575 ubiquitin-conjugating enzyme E2 N-like NW_004955444 18531130 18531656 - 102015575 AGCD01039242 MODEL 8939722 protein-coding Tnks tankyrase ENCODES a protein that exhibits histone binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN cellular response to nutrient (ortholog); negative regulation of maintenance of mitotic sister chromatid cohesion, telomeric (ortholog); negative regulation of telomere maintenance via telomere lengthening (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; FOUND IN chromosome, telomeric region (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955463 5589194 5770141 + 102020894 AGCD01049641;AGCD01049642;AGCD01049643;AGCD01049644;GBDF01044672;XM_005398362 XP_005398419 MODEL 10233278 ncrna LOC106146755 uncharacterized LOC106146755 NW_004955402 26169966 26177783 - 106146755 AGCD01000675;GBDJ01150334;XR_001231331 MODEL 8824204 protein-coding Papolb poly(A) polymerase beta PARTICIPATES IN 3'-end pre-mRNA processing pathway; FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); nucleus (ortholog) NW_004955460 10941776 10946235 + 102014753 AGCD01048625;AGCD01048626;GBDF01044351;GBDF01051821;XM_013521248 XP_013376702 MODEL 8714229 pseudo LOC102018637 dnaJ homolog subfamily B member 11-like NW_004955524 100914 102457 - 102018637 AGCD01068664 MODEL 8726326 protein-coding Bola2b bolA family member 2B INVOLVED IN [2Fe-2S] cluster assembly (ortholog); cell redox homeostasis (ortholog); intracellular iron ion homeostasis (ortholog); FOUND IN cytoplasm (ortholog); iron-sulfur cluster assembly complex (ortholog); nucleus (ortholog) NW_004955493 6812208 6812932 + 102020575 AGCD01061141;GBDF01002632;XM_005405183 XP_005405240 MODEL 10111423 protein-coding LOC106147038 major allergen Can f 1-like NW_004955513 4079061 4083743 + 106147038 AGCD01066914;AGCD01066915;GBBH01002645;XM_013506578 XP_013362032 MODEL 9061096 pseudo LOC102025392 PDZ domain-containing protein 11 pseudogene NW_004955436 2821151 2821591 + 102025392 AGCD01033614 MODEL 8845470 protein-coding Tspan10 tetraspanin 10 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN establishment of protein localization to organelle (ortholog); protein maturation (ortholog) NW_004955506 1442378 1448726 - 102003161 AGCD01065263;AGCD01065264;GBCE01121011;XM_005407269;XM_005407270 XP_005407326;XP_005407327 MODEL 9061887 pseudo LOC102025716 40S ribosomal protein SA pseudogene NW_004955518 4973369 4974312 + 102025716 AGCD01067846 MODEL 8879662 protein-coding Nedd9 neural precursor cell expressed, developmentally down-regulated 9 ENCODES a protein that exhibits protein tyrosine kinase binding (ortholog); INVOLVED IN activation of GTPase activity (ortholog); cilium disassembly (ortholog); learning or memory (ortholog); ASSOCIATED WITH multiple sclerosis (ortholog); FOUND IN basolateral plasma membrane (ortholog); ciliary basal body (ortholog); cytoplasm (ortholog) NW_004955465 3101409 3281481 + 102017964 AGCD01050367;AGCD01050368;AGCD01050369;AGCD01050370;GBDI01262004;XM_005398827;XM_013521849 XP_005398884;XP_013377303 MODEL 9046865 protein-coding Lekr1 leucine, glutamate and lysine rich 1 NW_004955448 7834824 8030085 + 102020174 AGCD01041426;AGCD01041427;AGCD01041428;AGCD01041429;AGCD01041430;AGCD01041431;AGCD01041432;AGCD01041433;GBBH01145521;XM_005393081;XM_005393082;XM_005393083;XM_005393084;XM_005393085 XP_005393138;XP_005393139;XP_005393140;XP_005393141;XP_005393142 MODEL 8860960 protein-coding Polr3h RNA polymerase III subunit H ENCODES a protein that exhibits DNA-directed RNA polymerase activity (ortholog); INVOLVED IN termination of RNA polymerase III transcription (ortholog); transcription by RNA polymerase III (ortholog); transcription initiation at RNA polymerase III promoter (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH primary ovarian insufficiency (ortholog); FOUND IN centrosome (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955413 27065785 27072432 - 102018585 AGCD01014491;GBDF01289959;XM_005379351;XM_013511356;XM_013511357 XP_005379408;XP_013366810;XP_013366811 MODEL 9022324 protein-coding Phldb2 pleckstrin homology like domain family B member 2 INVOLVED IN basement membrane organization (ortholog); cell migration (ortholog); establishment of cell polarity (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN basal cortex (ortholog); cell cortex (ortholog); cell leading edge (ortholog) NW_004955427 12284100 12385755 + 102022107 AGCD01027207;AGCD01027208;AGCD01027209;AGCD01027210;AGCD01027211;AGCD01027212;GBCQ01064005;XM_005386372;XM_013515158;XM_013515159;XM_013515160;XM_013515161;XM_013515162 XP_005386429;XP_013370612;XP_013370613;XP_013370614;XP_013370615;XP_013370616 MODEL 8965043 protein-coding LOC102027773 putative olfactory receptor 5AK3 NW_004955511 2076510 2077220 + 102027773 AGCD01066388;XM_005408250 XP_005408307 MODEL 8908727 pseudo LOC102029512 coiled-coil domain-containing protein 94 pseudogene NW_004955480 3683840 3684999 - 102029512 AGCD01056631;XM_005402473 MODEL 9056170 protein-coding Pkn3 protein kinase N3 INVOLVED IN epithelial cell migration (ortholog) NW_004955570 1121803 1131296 + 102006720 AGCD01074791;GBDF01093773;GBDI01353130;XM_005413576;XM_005413578 XP_005413633;XP_005413635 MODEL 9036098 ncrna LOC102012163 uncharacterized LOC102012163 NW_004955409 610554 611768 - 102012163 AGCD01009158;GBDF01126147;XR_259741 MODEL 8804869 protein-coding Lelp1 late cornified envelope like proline rich 1 NW_004955592 219771 222770 - 102008483 AGCD01076301;GBDF01008405;XM_005414608 XP_005414665 MODEL 9024250 protein-coding Srsf12 serine and arginine rich splicing factor 12 INVOLVED IN mRNA 5'-splice site recognition (ortholog); regulation of alternative mRNA splicing, via spliceosome (ortholog); PARTICIPATES IN spliceosome pathway NW_004955411 15851482 15918864 - 102017108 AGCD01011954;AGCD01011955;AGCD01011956;AGCD01011957;AGCD01011958;AGCD01011959;GBDF01042758;XM_013510715 XP_013366169 MODEL 8733908 ncrna LOC102024306 uncharacterized LOC102024306 NW_004955456 2252901 2273331 - 102024306 AGCD01046252;GBDK01060500;XR_262869 MODEL 8745693 protein-coding LOC102019761 tubulin gamma-1 chain NW_004955451 16487052 16494867 + 102019761 AGCD01043680;AGCD01043681;GBDJ01004622;XM_005394465 XP_005394522 MODEL 8996395 pseudo LOC102009404 sorting nexin-6 pseudogene NW_004955427 21883319 21885923 - 102009404 AGCD01027461 MODEL 8949334 ncrna LOC102009056 uncharacterized LOC102009056 NW_004955418 15612269 15614198 - 102009056 AGCD01019108;GBDF01097946;XR_260557 MODEL 9044095 pseudo LOC102021551 protein FAM156A/FAM156B-like NW_004955475 2559027 2559617 - 102021551 AGCD01054812 MODEL 8756329 protein-coding LOC102015577 vomeronasal type-1 receptor 2-like NW_004955569 946463 947353 - 102015577 AGCD01074628;XM_013509363 XP_013364817 MODEL 8764050 protein-coding LOC102026788 bone marrow stromal antigen 2-like NW_004955524 871493 874536 + 102026788 AGCD01068719;AGCD01068720;GBDF01088011;XM_013507185 XP_013362639 MODEL 8887806 protein-coding LOC102003616 spidroin-1-like NW_004955405 39280354 39282100 - 102003616 AGCD01005498;XM_013519522 XP_013374976 MODEL 8911878 pseudo LOC102006051 cyclin-G1 pseudogene NW_004955427 21210303 21211288 - 102006051 AGCD01027434 MODEL 10080945 ncrna LOC106146492 uncharacterized LOC106146492 NW_004955481 8217811 8223419 + 106146492 AGCD01057082;GBDK01305626;XR_001230947 MODEL 9015579 pseudo LOC102006428 transketolase pseudogene NW_004955459 3131676 3133894 + 102006428 AGCD01048009 MODEL 8884763 protein-coding Etv6 ETS variant transcription factor 6 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN cell differentiation (ortholog); hematopoietic stem cell proliferation (ortholog); mesenchymal cell apoptotic process (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog) NW_004955413 8698412 8912011 + 102012300 AGCD01013886;AGCD01013887;GBDI01290570;GBDJ01030940;XM_013511474 XP_013366928 MODEL 9029170 protein-coding Papolg poly(A) polymerase gamma ENCODES a protein that exhibits metal ion binding (ortholog); poly(A) RNA polymerase activity (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; FOUND IN cytosol (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955424 23005942 23034360 - 102027760 AGCD01024997;AGCD01024998;GBDJ01030473;XM_005385754;XM_005385755;XM_005385756;XM_013514739 XP_005385811;XP_005385812;XP_005385813;XP_013370193 MODEL 8791391 protein-coding Spint2 serine peptidase inhibitor, Kunitz type 2 ENCODES a protein that exhibits serine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN basement membrane organization (ortholog); cellular response to BMP stimulus (ortholog); epithelial cell morphogenesis involved in placental branching (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); biliary atresia (ortholog); carcinoma (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog) NW_004955468 1142718 1181210 - 102020551 AGCD01051757;AGCD01051758;AGCD01051759;AGCD01051760;GBBH01003770;XM_005399867;XM_005399868;XM_013522432 XP_005399924;XP_005399925;XP_013377886 MODEL 9056902 protein-coding LOC102027131 vomeronasal type-1 receptor 1-like NW_004955584 657373 658290 + 102027131 AGCD01075953;XM_005414415 XP_005414472 MODEL 8758141 pseudo LOC102010222 small nuclear ribonucleoprotein Sm D1 pseudogene NW_004955405 4117051 4117475 - 102010222 AGCD01004644;XM_005374670 MODEL 10270923 ncrna LOC106148127 uncharacterized LOC106148127 NW_004955416 15450786 15466521 + 106148127 AGCD01017331;AGCD01017332;XR_001233291 MODEL 8821925 pseudo LOC102012616 phosphatidylinositol N-acetylglucosaminyltransferase subunit Y-like NW_004955410 34241134 34241470 - 102012616 AGCD01011399 MODEL 8708389 protein-coding Slc35g6 solute carrier family 35 member G6 NW_004955467 9447756 9450653 - 102012080 AGCD01051511;GBDF01001619;XM_013522195 XP_013377649 MODEL 616940640 snorna SNORD68 small nucleolar RNA, C/D box 68 10165555 protein-coding LOC106146366 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like NW_004955476 213883 220267 + 106146366 AGCD01055192;GBDF01122041;XM_013502902 XP_013358356 MODEL 8699839 protein-coding Six1 SIX homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN aorta morphogenesis (ortholog); branching involved in ureteric bud morphogenesis (ortholog); cellular response to 3,3',5-triiodo-L-thyronine (ortholog); ASSOCIATED WITH 22q11 Deletion Syndrome (ortholog); autosomal dominant nonsyndromic deafness (ortholog); autosomal dominant nonsyndromic deafness 23 (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955466 8961597 8966069 + 102016994 AGCD01051010;AGCD01051011;GBDI01084435;XM_005399176 XP_005399233 MODEL 9052577 protein-coding Tnks2 tankyrase 2 ENCODES a protein that exhibits enzyme binding (ortholog); NAD+ poly-ADP-ribosyltransferase activity (ortholog); NAD+-protein mono-ADP-ribosyltransferase activity (ortholog); INVOLVED IN multicellular organism growth (ortholog); negative regulation of telomere maintenance via telomere lengthening (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); PARTICIPATES IN ADP-ribosylation pathway, mono and poly-ribosylation; FOUND IN cytoplasm (ortholog); nuclear envelope (ortholog); nucleus (ortholog) NW_004955425 1419013 1492267 - 102007572 AGCD01025230;AGCD01025231;GBCB01057193;XM_005385828;XM_013514874 XP_005385885;XP_013370328 MODEL 9048928 ncrna LOC102025394 uncharacterized LOC102025394 NW_004955533 2066486 2072522 + 102025394 AGCD01070384;XR_264746 MODEL 10086810 protein-coding LOC106149328 SRC kinase signaling inhibitor 1-like NW_004955443 3338227 3341114 - 106149328 AGCD01038191;XM_013518030 XP_013373484 MODEL 8770578 ncrna LOC102021557 uncharacterized LOC102021557 NW_004955482 5627591 5629868 - 102021557 AGCD01057343;XR_263833 MODEL 8843480 protein-coding Yeats4 YEATS domain containing 4 ENCODES a protein that exhibits histone H3K18ac reader activity (ortholog); histone H3K27ac reader activity (ortholog); INVOLVED IN gene expression (ortholog); positive regulation of double-strand break repair via homologous recombination (ortholog); regulation of cell cycle (ortholog); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; ASSOCIATED WITH high grade glioma (ortholog); liposarcoma (ortholog); FOUND IN NuA4 histone acetyltransferase complex (ortholog); nucleoplasm (ortholog); nucleosome (ortholog) NW_004955405 9677701 9706541 + 102024641 AGCD01004787;AGCD01004788;AGCD01004789;AGCD01004790;GBDI01290622;XM_005374299 XP_005374356 MODEL 8823604 ncrna LOC102025718 uncharacterized LOC102025718 NW_004955435 747585 767958 + 102025718 AGCD01032729;GBDF01156086;XR_001234842;XR_001234843;XR_261652 MODEL 8990689 protein-coding Nefh neurofilament heavy chain ENCODES a protein that exhibits protein kinase binding (ortholog); protein-containing complex binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN axon development (ortholog); axon regeneration (ortholog); cellular response to estradiol stimulus (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); Anti-N-Methyl-D-Aspartate Receptor Encephalitis (ortholog); FOUND IN apical dendrite (ortholog); axon (ortholog); basal proximal dendrite (ortholog) NW_004955455 3735330 3744714 + 102007407 AGCD01045648;AGCD01045649;AGCD01045650;GBDK01418511;XM_013520291;XM_013520292;XM_013520293;XM_013520294;XM_013520295 XP_013375745;XP_013375746;XP_013375747;XP_013375748;XP_013375749 MODEL 8871664 ncrna LOC102020795 uncharacterized LOC102020795 NW_004955472 1467889 1468164 - 102020795 AGCD01053394;GBCQ01096208;XR_263544 MODEL 10103955 protein-coding LOC106150147 basic proline-rich protein-like NW_004955466 13485586 13540725 + 106150147 AGCD01051160;AGCD01051161;GBDI01214644;XM_013521885 XP_013377339 MODEL 8930418 ncrna LOC102028453 uncharacterized LOC102028453 NW_004955432 1914320 1940500 + 102028453 AGCD01030611;GBDJ01123117;XR_001234679 MODEL 8720706 ncrna LOC102023949 uncharacterized LOC102023949 NW_004955435 18533431 18550571 + 102023949 AGCD01033406;GBDJ01257305;XR_261721 MODEL 8754871 ncrna LOC102012171 uncharacterized LOC102012171 NW_004955462 1256543 1258197 + 102012171 AGCD01049105;GBDF01021159;XR_263088 MODEL 8993276 protein-coding Pknox1 PBX/knotted 1 homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN angiogenesis (ortholog); camera-type eye development (ortholog); erythrocyte differentiation (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); transcription regulator complex (ortholog) NW_004955407 38949060 38982984 - 102006875 AGCD01007815;AGCD01007816;GBCE01008569;XM_005375800;XM_005375801;XM_005375802 XP_005375857;XP_005375858;XP_005375859 MODEL 8876337 protein-coding Krt77 keratin 77 FOUND IN cornified envelope (ortholog); cytoskeleton (ortholog) NW_004955458 37218 49069 - 102006636 AGCD01047105;GBCC01000798;XM_005397125 XP_005397182 MODEL 8994134 protein-coding Tg thyroglobulin ENCODES a protein that exhibits anion binding (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cellular response to genistein (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); iodide transport (ortholog); PARTICIPATES IN thyroid hormone biosynthetic pathway; ASSOCIATED WITH alcoholic liver cirrhosis (ortholog); Animal Disease Models (ortholog); anxiety disorder (ortholog); FOUND IN extracellular region (ortholog); perinuclear region of cytoplasm (ortholog); protein-containing complex (ortholog) NW_004955461 7487268 7703458 + 102014754 AGCD01048919;AGCD01048920;AGCD01048921;GBDI01018076;XM_005398023 XP_005398080 MODEL 9004551 protein-coding Lemd1 LEM domain containing 1 NW_004955406 41126284 41181007 - 102008696 AGCD01006672;AGCD01006673;GBDJ01221678;XM_005375357;XM_005375358;XM_013522920 XP_005375414;XP_005375415;XP_013378374 MODEL 8975253 protein-coding LOC102004655 zinc finger protein 709-like NW_004955569 1219307 1247738 - 102004655 AGCD01074645;GBDI01176345;XM_005413497 XP_005413554 MODEL 8773270 protein-coding Srsf2 serine and arginine rich splicing factor 2 ENCODES a protein that exhibits pre-mRNA binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN regulation of alternative mRNA splicing, via spliceosome (ortholog); response to vitamin E (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN interchromatin granule (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955506 5569280 5572164 + 102017685 AGCD01065373;AGCD01065374;GBDK01018068;XM_013506028 XP_013361482 MODEL 10118229 protein-coding LOC106147040 uncharacterized LOC106147040 NW_004955513 3677122 3679962 - 106147040 AGCD01066908;GBDK01267496;XM_013506586;XM_013506587 XP_013362040;XP_013362041 MODEL 8897070 protein-coding Bola3 bolA family member 3 INVOLVED IN adaptive thermogenesis (ortholog); energy homeostasis (ortholog); glucose metabolic process (ortholog); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; ASSOCIATED WITH genetic disease (ortholog); multiple mitochondrial dysfunctions syndrome 2 (ortholog); FOUND IN iron-sulfur cluster assembly complex (ortholog); mitochondrion (ortholog) NW_004955424 11583508 11590626 + 102005818 AGCD01024571;GBCB01006087;GBCE01055358;XM_005385527 XP_005385584 MODEL 9032812 pseudo LOC102003302 COMM domain-containing protein 10-like NW_004955602 139591 140263 + 102003302 AGCD01076763 MODEL 8867928 protein-coding LOC102009058 L-amino-acid oxidase-like NW_004955418 29930239 29946380 - 102009058 AGCD01019491;AGCD01019492;XM_005382362 XP_005382419 MODEL 9053578 protein-coding LOC102018220 butyrophilin subfamily 1 member A1-like NW_004955437 999109 1050071 - 102018220 AGCD01034182;AGCD01034183;AGCD01034184;AGCD01034185;AGCD01034186;AGCD01034187;GBCQ01003449;XM_005389445 XP_005389502 MODEL 9036237 protein-coding Scn4a sodium voltage-gated channel alpha subunit 4 ENCODES a protein that exhibits voltage-gated sodium channel activity (ortholog); INVOLVED IN choline transport (ortholog); monoatomic cation transport (ortholog); potassium ion transport (ortholog); ASSOCIATED WITH congenital myasthenic syndrome (ortholog); congenital myasthenic syndrome 16 (ortholog); congenital myopathy (ortholog); FOUND IN plasma membrane (ortholog); voltage-gated sodium channel complex (ortholog) NW_004955478 7861585 7906192 + 102017869 AGCD01055998;GBCB01000298;XM_005402177;XM_013503233 XP_005402234;XP_013358687 MODEL 8940671 protein-coding LOC102006056 olfactory receptor 8J3-like NW_004955511 1507684 1508625 + 102006056 AGCD01066370;XM_005407964 XP_005408021 MODEL 10294434 ncrna LOC106146493 uncharacterized LOC106146493 NW_004955481 8068251 8073812 + 106146493 AGCD01057079;XR_001230948 MODEL 8776955 ncrna LOC102006432 uncharacterized LOC102006432 NW_004955410 5331999 5347043 - 102006432 AGCD01010683;GBBH01023353;XR_001232771;XR_259820 MODEL 8901800 pseudo LOC102007517 swi5-dependent recombination DNA repair protein 1 homolog pseudogene NW_004955408 24197900 24198617 + 102007517 AGCD01008599 MODEL 8721183 protein-coding Phldb3 pleckstrin homology like domain family B member 3 ENCODES a protein that exhibits enzyme binding (ortholog) NW_004955555 1241728 1261531 - 102015777 AGCD01073067;AGCD01073068;GBDI01004272;XM_005412439;XM_013508778;XM_013508779 XP_005412496;XP_013364232;XP_013364233 MODEL 8704959 protein-coding LOC102029518 C-C chemokine receptor type 1 NW_004955420 25759430 25764447 + 102029518 AGCD01021369;GBCQ01017077;XM_005383455 XP_005383512 MODEL 8965658 pseudo LOC102025722 periphilin-1-like NW_004955529 292439 294248 + 102025722 AGCD01069627;AGCD01069628 MODEL 9043935 protein-coding Eva1a eva-1 homolog A, regulator of programmed cell death INVOLVED IN apoptotic process (ortholog); autophagy (ortholog); cardiac left ventricle morphogenesis (ortholog) NW_004955424 10308586 10358477 + 102016071 AGCD01024511;AGCD01024512;GBCE01133628;XM_005385464;XM_005385465;XM_005385466;XM_005385467;XM_005385470;XM_005385471;XM_013514721;XM_013514722 XP_005385521;XP_005385522;XP_005385523;XP_005385524;XP_005385527;XP_005385528;XP_013370175;XP_013370176 MODEL 10339737 ncrna LOC106148128 uncharacterized LOC106148128 NW_004955403 11708358 11725306 + 106148128 AGCD01001958;XR_001233294 MODEL 8876788 ncrna LOC102024316 uncharacterized LOC102024316 NW_004955410 27120738 27127442 + 102024316 AGCD01011209;GBDJ01019626;XR_259870 MODEL 8796350 pseudo LOC102018639 polycomb complex protein BMI-1-like NW_004955529 1100230 1104601 - 102018639 AGCD01069673 MODEL 9037517 protein-coding LOC102009405 suppressor protein SRP40-like NW_004955428 50432 51439 - 102009405 AGCD01027559;XM_005386839 XP_005386896 MODEL 9021303 ncrna LOC102012627 uncharacterized LOC102012627 NW_004955414 6716037 6849197 - 102012627 AGCD01014930;AGCD01014931;AGCD01014932;AGCD01014933;AGCD01014934;AGCD01014935;AGCD01014936;AGCD01014937;AGCD01014938;AGCD01014939;AGCD01014940;GBDK01105428;XR_001233085;XR_001233086;XR_001233087;XR_001233088;XR_001233089;XR_001233090;XR_001233091;XR_001233092;XR_001233093;XR_260159;XR_260161 MODEL 8839479 ncrna LOC102030236 uncharacterized LOC102030236 NW_004955437 17763295 17764533 - 102030236 AGCD01034758;GBDK01353112;XR_001235064;XR_261885 MODEL 39132713 snrna U4 U4 spliceosomal RNA 39131436 protein-coding IGLV9-49 immunoglobulin lambda variable 9-49 8775663 protein-coding Six2 SIX homeobox 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN anterior/posterior axis specification (ortholog); cell migration (ortholog); cell population proliferation (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); chronic kidney disease (ortholog); cleft palate (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955441 12029530 12033214 - 102008033 AGCD01037116;GBBH01030680;GBCB01005025;XM_005390965 XP_005391022 MODEL 9018378 pseudo LOC102026790 mimitin, mitochondrial pseudogene NW_004955435 14181309 14186828 + 102026790 AGCD01033220 MODEL 8757214 protein-coding LOC102027777 uncharacterized LOC102027777 NW_004955513 4839541 4843473 - 102027777 AGCD01066940;GBDJ01292902;XM_013506568;XM_013506569 XP_013362022;XP_013362023 MODEL 9009240 protein-coding Tgds TDP-glucose 4,6-dehydratase ENCODES a protein that exhibits dTDP-glucose 4,6-dehydratase activity (ortholog); UDP-glucose 4,6-dehydratase activity (ortholog); INVOLVED IN glycosaminoglycan biosynthetic process (ortholog); ASSOCIATED WITH Catel Manzke syndrome (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955404 15279956 15298295 + 102027604 AGCD01003541;GBCE01123205;XM_005374111;XM_005374112;XM_005374113;XM_013516287 XP_005374168;XP_005374169;XP_005374170;XP_013371741 MODEL 39131431 protein-coding SPINT4 serine peptidase inhibitor, Kunitz type 4 8729820 ncrna LOC102021559 uncharacterized LOC102021559 NW_004955484 6885587 6902049 + 102021559 AGCD01058297;GBDF01041123;XR_263891;XR_263892 MODEL 8913008 ncrna LOC102027135 uncharacterized LOC102027135 NW_004955737 24525 28671 + 102027135 AGCD01078239;GBDF01052067;XR_265185 MODEL 8948879 protein-coding LOC102019762 zinc finger protein 596-like NW_004955403 53350577 53361660 + 102019762 AGCD01003053;XM_013514941 XP_013370395 MODEL 9064063 protein-coding Nefl neurofilament light chain ENCODES a protein that exhibits identical protein binding (ortholog); molecular condensate scaffold activity (ortholog); phospholipase binding (ortholog); INVOLVED IN anterograde axonal transport (ortholog); axonal transport of mitochondrion (ortholog); cerebral cortex development (ortholog); ASSOCIATED WITH acute disseminated encephalomyelitis (ortholog); AIDS Dementia Complex (ortholog); Alzheimer's disease (ortholog); FOUND IN axon (ortholog); cholinergic synapse (ortholog); cytoplasm (ortholog) NW_004955403 47946413 47951734 - 102021934 AGCD01002904;GBDI01079979;XM_005373709;XM_005373710 XP_005373766;XP_005373767 MODEL 8867514 pseudo LOC102020798 protein tyrosine phosphatase type IVA 1 pseudogene NW_004955415 12226682 12227264 - 102020798 AGCD01016186 MODEL 150537114 snorna SNORD69 small nucleolar RNA, C/D box 69 10112752 pseudo LOC106146367 small nuclear ribonucleoprotein E pseudogene NW_004955476 3881901 3882632 - 106146367 AGCD01055260 MODEL 8763806 protein-coding Slc36a2 solute carrier family 36 member 2 ENCODES a protein that exhibits amino acid:proton symporter activity (ortholog); glycine transmembrane transporter activity (ortholog); L-alanine transmembrane transporter activity (ortholog); INVOLVED IN amino acid export across plasma membrane (ortholog); glycine transport (ortholog); L-alanine transport (ortholog); ASSOCIATED WITH Glycinuria with or without Oxalate Urolithiasis (ortholog); iminoglycinuria (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog); recycling endosome membrane (ortholog) NW_004955408 2363416 2392210 + 102015694 AGCD01008006;GBCB01006475;XM_005376052;XM_005376053;XM_005376054;XM_005376055 XP_005376109;XP_005376110;XP_005376111;XP_005376112 MODEL 8876614 protein-coding LOC102015579 chromosome unknown open reading frame, human C1orf35 NW_004955581 316424 319109 + 102015579 AGCD01075667;GBDK01091133;XM_005414241 XP_005414298 MODEL 10374311 ncrna LOC106148129 uncharacterized LOC106148129 NW_004955416 26851602 26854773 + 106148129 AGCD01017606;GBCB01110067;XR_001233295 MODEL 8907540 protein-coding LOC102004656 UDP-glucuronosyltransferase 2B14-like NW_004955447 4066107 4075826 + 102004656 AGCD01040701;AGCD01040702;GBDJ01380770;XM_005392809;XM_013518529 XP_005392866;XP_013373983 MODEL 8888677 protein-coding LOC102003619 tubulin alpha chain-like NW_004955406 36709889 36828026 + 102003619 AGCD01006562;AGCD01006563;AGCD01006564;AGCD01006565;AGCD01006566;AGCD01006567;GBCQ01012688;XM_005375474 XP_005375531 MODEL 8975436 protein-coding Polr3k RNA polymerase III subunit K ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN termination of RNA polymerase III transcription (ortholog); transcription by RNA polymerase III (ortholog); transcription initiation at RNA polymerase III promoter (ortholog); PARTICIPATES IN RNA polymerase III transcription pathway; ASSOCIATED WITH Disease Progression (ortholog); hypomyelinating leukodystrophy 21 (ortholog); Stomach Neoplasms (ortholog); FOUND IN RNA polymerase III complex (ortholog) NW_004955442 17101585 17106689 + 102010204 AGCD01037937;GBDI01260720;XM_005391684 XP_005391741 MODEL 10257724 pseudo LOC106149329 uncharacterized protein C11orf98 homolog pseudogene NW_004955443 6526035 6537783 - 106149329 AGCD01038261 MODEL 8803570 pseudo LOC102010227 coenzyme Q-binding protein COQ10 homolog B, mitochondrial pseudogene NW_004955406 14637868 14638870 + 102010227 AGCD01005967 MODEL 10212614 ncrna LOC106146757 uncharacterized LOC106146757 NW_004955494 5480093 5484242 - 106146757 AGCD01061521;XR_001231332 MODEL 8715733 protein-coding Yes1 YES proto-oncogene 1, Src family tyrosine kinase ENCODES a protein that exhibits enzyme binding (ortholog); epidermal growth factor receptor binding (ortholog); phosphotyrosine residue binding (ortholog); INVOLVED IN cellular response to platelet-derived growth factor stimulus (ortholog); cellular response to retinoic acid (ortholog); cellular response to transforming growth factor beta stimulus (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; glypican signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); double outlet right ventricle (ortholog); Myocardial Reperfusion Injury (ortholog); FOUND IN actin filament (ortholog); anchoring junction (ortholog); cell junction (ortholog) NW_004955402 9199704 9255183 + 102021819 AGCD01000209;AGCD01000210;AGCD01000211;GBDF01249763;XM_005372669 XP_005372726 MODEL 9042959 protein-coding Pappa pappalysin 1 ENCODES a protein that exhibits endopeptidase activity (ortholog); metalloendopeptidase activity (ortholog); metallopeptidase activity (ortholog); INVOLVED IN female pregnancy (ortholog); protein catabolic process (ortholog); response to dexamethasone (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); arteriosclerosis (ortholog); carotid artery disease (ortholog); FOUND IN extracellular region (ortholog) NW_004955419 11415666 11645994 - 102005262 AGCD01019956;AGCD01019957;AGCD01019958;GBCQ01066659;GBDJ01249278;XM_013513305 XP_013368759 MODEL 8930982 pseudo LOC102028454 40S ribosomal protein S2 pseudogene NW_004955432 11209997 11210780 - 102028454 AGCD01030943 MODEL 8809700 protein-coding Tspan12 tetraspanin 12 ENCODES a protein that exhibits Wnt receptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); maintenance of blood-brain barrier (ortholog); Norrin signaling pathway (ortholog); ASSOCIATED WITH Disease Susceptibility (ortholog); exudative vitreoretinopathy (ortholog); exudative vitreoretinopathy 5 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955479 2570937 2636884 - 102005930 AGCD01056276;AGCD01056277;GBCB01074924;GBCE01134144;XM_013503288 XP_013358742 MODEL 8723956 pseudo LOC102007523 NEDD8-conjugating enzyme Ubc12 pseudogene NW_004955409 21637990 21714722 + 102007523 AGCD01009975;AGCD01009976;AGCD01009977;AGCD01009978;XM_005377162 MODEL 8734318 pseudo LOC102012173 60S ribosomal protein L39 pseudogene NW_004955463 13487897 13488102 + 102012173 AGCD01049868;XM_005398412 MODEL 8771755 protein-coding Spire1 spire type actin nucleation factor 1 INVOLVED IN actin cytoskeleton organization (ortholog); behavioral fear response (ortholog); cleavage furrow formation (ortholog); FOUND IN cell cortex (ortholog); cleavage furrow (ortholog); cytoplasmic vesicle membrane (ortholog) NW_004955402 920730 1011339 + 102010213 AGCD01000038;AGCD01000039;AGCD01000040;AGCD01000041;AGCD01000042;GBCB01058656;XM_005372557;XM_005372558;XM_005372559;XM_005372560 XP_005372614;XP_005372615;XP_005372616;XP_005372617 MODEL 9006180 protein-coding Phlpp1 PH domain and leucine rich repeat protein phosphatase 1 ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN circadian rhythm (ortholog); entrainment of circadian clock (ortholog); hippocampus development (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; protein kinase C (PKC) signaling pathway; ASSOCIATED WITH epilepsy (ortholog); Neoplastic Cell Transformation (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); nuclear membrane (ortholog) NW_004955402 46563918 46773349 + 102008802 AGCD01001160;AGCD01001161;AGCD01001162;AGCD01001163;AGCD01001164;AGCD01001165;AGCD01001166;AGCD01001167;GBCE01044666;GBDF01080387;XM_013511215 XP_013366669 MODEL 9000894 protein-coding Lemd2 LEM domain nuclear envelope protein 2 INVOLVED IN heart formation (ortholog); negative regulation of MAPK cascade (ortholog); negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); cataract (ortholog); cataract 46 juvenile-onset (ortholog); FOUND IN chromatin (ortholog); endoplasmic reticulum (ortholog); nuclear envelope (ortholog) NW_004955437 2163977 2178783 - 102011244 AGCD01034260;AGCD01034261;GBBH01091464;GBCE01152671;XM_013516995 XP_013372449 MODEL 10077044 protein-coding LOC106147041 lipocalin-1-like NW_004955513 2472464 2477658 + 106147041 AGCD01066880;GBBH01072118;XM_013506589 XP_013362043 MODEL 8737693 protein-coding Pknox2 PBX/knotted 1 homeobox 2 ENCODES a protein that exhibits actin filament binding (ortholog); actin monomer binding (ortholog); DNA binding (ortholog); INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); Familial Prostate Cancer (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); microtubule cytoskeleton (ortholog) NW_004955412 26214671 26468737 + 102019898 AGCD01013185;AGCD01013186;AGCD01013187;AGCD01013188;AGCD01013189;AGCD01013190;GBCE01069857;XM_005378457;XM_005378458;XM_013511208;XM_013511209 XP_005378514;XP_005378515;XP_013366662;XP_013366663 MODEL 9020402 protein-coding LOC102025397 SLAM family member 9-like NW_004955545 3193069 3198260 - 102025397 AGCD01071934;GBDF01111729;XM_013508200 XP_013363654 MODEL 8723176 pseudo LOC102030238 SUMO-conjugating enzyme UBC9 pseudogene NW_004955437 9961358 9961837 - 102030238 AGCD01034554 MODEL 8835897 protein-coding Srsf3 serine and arginine rich splicing factor 3 ENCODES a protein that exhibits phospholipase binding (ortholog); pre-mRNA binding (ortholog); primary miRNA binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); mRNA export from nucleus (ortholog); primary miRNA processing (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH bipolar disorder (ortholog); ovary epithelial cancer (ortholog); Wallerian Degeneration (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955437 6306151 6314332 - 102028575 AGCD01034427;AGCD01034428;GBDI01019802;XM_005389649 XP_005389706 MODEL 8964247 pseudo LOC102018222 ribulose-phosphate 3-epimerase-like NW_004955537 2568245 2569307 - 102018222 AGCD01070931 MODEL 8899142 protein-coding Boll boule RNA binding protein ENCODES a protein that exhibits identical protein binding (ortholog); translation activator activity (ortholog); INVOLVED IN meiotic cell cycle (ortholog); positive regulation of translational initiation (ortholog); ASSOCIATED WITH Colorectal Neoplasms (ortholog); FOUND IN cytoplasm (ortholog) NW_004955403 2917694 2963470 + 102012820 AGCD01001740;AGCD01001741;AGCD01001742;GBDF01004912;XM_005373262;XM_013512039;XM_013512041 XP_005373319;XP_013367493;XP_013367495 MODEL 39132716 snrna U4 U4 spliceosomal RNA 8949886 pseudo LOC102004657 UBX domain-containing protein 2B pseudogene NW_004955402 184252 185227 + 102004657 AGCD01000011 MODEL 10270928 protein-coding LOC106150148 translation initiation factor IF-2-like NW_004955466 889203 889874 + 106150148 AGCD01050681;GBBH01210034;XM_013521886 XP_013377340 MODEL 8708315 protein-coding LOC102006058 olfactory receptor 5D16-like NW_004955511 662118 663074 + 102006058 AGCD01066337;XM_005408204 XP_005408261 MODEL 8817192 pseudo LOC102006437 splicing factor 45-like NW_004955411 31564696 31581136 + 102006437 AGCD01012274;AGCD01012275 MODEL 9000469 pseudo LOC102023952 calcyclin-binding protein pseudogene NW_004955438 4183920 4184638 - 102023952 AGCD01035038 MODEL 10382204 ncrna LOC106146612 uncharacterized LOC106146612 NW_004955407 32683277 32687964 - 106146612 AGCD01007680;XR_001231135 MODEL 9021777 protein-coding LOC102029520 uncharacterized LOC102029520 NW_004955421 3695859 3700086 - 102029520 AGCD01021665;GBDF01240145;XM_005383681 XP_005383738 MODEL 8700796 ncrna LOC102027136 uncharacterized LOC102027136 NW_004955403 35908296 35923201 - 102027136 AGCD01002526;GBDF01211604;XR_259227;XR_259228 MODEL 8982326 protein-coding Krt78 keratin 78 FOUND IN cornified envelope (ortholog) NW_004955458 138622 146264 - 102008601 AGCD01047106;GBDI01256250;XM_005397131 XP_005397188 MODEL 8864639 protein-coding Eva1b eva-1 homolog B NW_004955452 14296607 14298331 - 102004667 AGCD01044463;GBDK01020136;XM_013519505 XP_013374959 MODEL 8837606 protein-coding Tnmd tenomodulin INVOLVED IN cellular response to BMP stimulus (ortholog); endothelial cell morphogenesis (ortholog); negative regulation of angiogenesis (ortholog) NW_004955503 6732791 6750693 + 102020142 AGCD01064767;AGCD01064768;GBBH01218483;XM_005406931 XP_005406988 MODEL 8852099 ncrna LOC102024319 uncharacterized LOC102024319 NW_004955411 4969494 4972069 - 102024319 AGCD01011592;XR_259917 MODEL 616940621 snorna SNORD7 small nucleolar RNA, C/D box 7 8890055 protein-coding Nefm neurofilament medium chain ENCODES a protein that exhibits protein-containing complex binding (ortholog); signaling receptor binding (ortholog); toxic substance binding (ortholog); INVOLVED IN axo-dendritic transport (ortholog); axon regeneration (ortholog); cellular response to estradiol stimulus (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); amyotrophic lateral sclerosis (ortholog); congenital hypothyroidism (ortholog); FOUND IN axon (ortholog); cytoskeleton (ortholog); intermediate filament (ortholog) NW_004955403 47920408 47926922 + 102021617 AGCD01002903;XM_005373708 XP_005373765 MODEL 8744987 protein-coding Slc36a3 solute carrier family 36 member 3 NW_004955408 2395045 2423797 + 102016670 AGCD01008006;GBDF01155539;XM_005376056 XP_005376113 MODEL 8824427 protein-coding LOC102026791 uncharacterized LOC102026791 NW_004955528 1519166 1532250 - 102026791 AGCD01069564;GBDF01243565;XM_005410017 XP_005410074 MODEL 9009417 protein-coding Scn4b sodium voltage-gated channel beta subunit 4 ENCODES a protein that exhibits sodium channel regulator activity (ortholog); transmembrane transporter binding (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN AV node cell action potential (ortholog); cardiac muscle cell action potential involved in contraction (ortholog); cardiac muscle contraction (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); Familial Atrial Fibrillation 17 (ortholog); long QT syndrome (ortholog); FOUND IN intercalated disc (ortholog); plasma membrane (ortholog); voltage-gated sodium channel complex (ortholog) NW_004955412 19312697 19330913 - 102006111 AGCD01012950;GBCB01003984;XM_005378229 XP_005378286 MODEL 8936301 protein-coding LOC102015580 myosin regulatory light chain 12B NW_004955402 7237291 7251530 - 102015580 AGCD01000168;AGCD01000169;GBCE01001461;XM_005372655 XP_005372712 MODEL 9013087 pseudo LOC102030239 polyadenylate-binding protein-interacting protein 1 pseudogene NW_004955438 8679384 8680765 - 102030239 AGCD01035162 MODEL 8857340 protein-coding Igsf1 immunoglobulin superfamily member 1 ENCODES a protein that exhibits activin receptor antagonist activity (ortholog); coreceptor activity (ortholog); inhibin binding (ortholog); INVOLVED IN negative regulation of activin receptor signaling pathway (ortholog); regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH congenital hypothyroidism (ortholog); Congenital Nongoitrous Hypothyroidism (ortholog); congenital nongoitrous hypothyroidism 1 (ortholog); FOUND IN membrane (ortholog) NW_004955473 3702471 3715506 + 102030300 AGCD01053935;GBDF01237848;XM_005401222;XM_013523048 XP_005401279;XP_013378502 MODEL 8986534 protein-coding LOC102021560 olfactory receptor 1N2-like NW_004955419 5190554 5191489 - 102021560 AGCD01019788;XM_013513101 XP_013368555 MODEL 8774746 protein-coding Polrmt RNA polymerase mitochondrial ENCODES a protein that exhibits 3'-5'-RNA exonuclease activity (ortholog); DNA-directed RNA polymerase activity (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN mitochondrial transcription (ortholog); transcription initiation at mitochondrial promoter (ortholog); ASSOCIATED WITH Alpers-Huttenlocher syndrome (ortholog); combined oxidative phosphorylation deficiency 55 (ortholog); long QT syndrome (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955495 7111271 7124005 + 102022939 AGCD01062119;GBDJ01389358;XM_005406033 XP_005406090 MODEL 8899570 ncrna LOC102025723 uncharacterized LOC102025723 NW_004955532 509493 513064 + 102025723 AGCD01070127;AGCD01070128;GBDI01019727;XR_264715 MODEL 8923496 protein-coding LOC102018228 olfactory receptor 11G2-like NW_004955550 899553 900582 + 102018228 AGCD01072529;XM_005412040 XP_005412097 MODEL 9017251 pseudo LOC102019765 zinc finger protein Aiolos pseudogene NW_004955404 14412796 14424219 + 102019765 AGCD01003509 MODEL 8906016 protein-coding LOC102018640 melanoma-associated antigen B1-like NW_004955531 724330 725875 + 102018640 AGCD01070007;XM_005410133 XP_005410190 MODEL 8985442 pseudo LOC102012628 ubiquitin-40S ribosomal protein S27a pseudogene NW_004955414 14752641 14753521 - 102012628 AGCD01015156 MODEL 8814818 pseudo LOC102003304 putative zinc finger protein 724 NW_004955607 218870 244872 - 102003304 AGCD01076979;AGCD01076980;AGCD01076981;XM_005414905 MODEL 8747732 protein-coding Pappa2 pappalysin 2 ENCODES a protein that exhibits metalloendopeptidase activity (ortholog); metallopeptidase activity (ortholog); INVOLVED IN bone morphogenesis (ortholog); proteolysis (ortholog); response to salt stress (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); SHORT STATURE, DAUBER-ARGENTE TYPE (ortholog); FOUND IN apical plasma membrane (ortholog) NW_004955406 16167764 16430165 + 102017422 AGCD01005994;AGCD01005995;AGCD01005996;AGCD01005997;GBCQ01032042;XM_005374904;XM_013520972 XP_005374961;XP_013376426 MODEL 8742476 protein-coding Tspan13 tetraspanin 13 ENCODES a protein that exhibits calcium channel regulator activity (ortholog); INVOLVED IN regulation of calcium ion transmembrane transport (ortholog); FOUND IN plasma membrane (ortholog) NW_004955410 19971216 19979923 + 102021637 AGCD01011039;GBBH01095569;XM_013510494 XP_013365948 MODEL 9004565 pseudo LOC102009061 liver carboxylesterase 2-like NW_004955484 9676099 9679287 - 102009061 AGCD01058425 MODEL 10280498 pseudo LOC106148131 small nuclear ribonucleoprotein E pseudogene NW_004955416 30043804 30044126 - 106148131 AGCD01017676 MODEL 8982203 protein-coding LOC102003620 keratin-associated protein 14-like NW_004955407 29792800 29793709 - 102003620 AGCD01007615;XM_005375631 XP_005375688 MODEL 10348884 ncrna LOC106147042 uncharacterized LOC106147042 NW_004955513 3949650 3969240 - 106147042 AGCD01066913;XR_001231735 MODEL 8718667 protein-coding Lenep lens epithelial protein NW_004955545 1495877 1497014 + 102017062 AGCD01071857;GBDF01240724;XM_005411536 XP_005411593 MODEL 8896606 protein-coding Spire2 spire type actin nucleation factor 2 INVOLVED IN actin cytoskeleton organization (ortholog); cleavage furrow formation (ortholog); establishment of meiotic spindle localization (ortholog); FOUND IN cell cortex (ortholog); cleavage furrow (ortholog); cytoplasmic vesicle membrane (ortholog) NW_004955541 3341705 3359646 + 102017814 AGCD01071442;GBDJ01072643;GBDJ01072649;XM_013507994;XM_013507995;XM_013507997 XP_013363448;XP_013363449;XP_013363451 MODEL 39133374 snorna SNORD70 small nucleolar RNA, C/D box 70 8892908 protein-coding Tgfa transforming growth factor alpha ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); growth factor activity (ortholog); receptor ligand activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell surface receptor signaling pathway (ortholog); epidermal growth factor receptor signaling pathway (ortholog); PARTICIPATES IN altered epidermal growth factor/neuregulin signaling pathway; epidermal growth factor/neuregulin signaling pathway; pancreatic cancer pathway; ASSOCIATED WITH acute kidney failure (ortholog); Animal Mammary Neoplasms (ortholog); Experimental Liver Neoplasms (ortholog); FOUND IN basolateral plasma membrane (ortholog); cell surface (ortholog); cytoplasmic vesicle (ortholog) NW_004955424 14616390 14709723 + 102005158 AGCD01024659;GBBH01221968;XM_005385613;XM_005385614 XP_005385670;XP_005385671 MODEL 8703320 protein-coding Srsf4 serine and arginine rich splicing factor 4 ENCODES a protein that exhibits sequence-specific mRNA binding (ortholog); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); negative regulation of mRNA splicing, via spliceosome (ortholog); response to insulin (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); clear cell renal cell carcinoma (ortholog); colon adenocarcinoma (ortholog); FOUND IN nuclear speck (ortholog) NW_004955452 8143850 8174830 - 102023221 AGCD01044211;GBDJ01016011;XM_005394977;XM_013519479;XM_013519480 XP_005395034;XP_013374933;XP_013374934 MODEL 8879513 protein-coding LOC102010229 keratin-associated protein 20-2-like NW_004955407 30229986 30230156 + 102010229 AGCD01007628;XM_005375650 XP_005375707 MODEL 8984106 pseudo LOC102020801 L-lactate dehydrogenase A chain-like NW_004955478 2250857 2252297 + 102020801 AGCD01055787 MODEL 9032292 protein-coding LOC102009408 von Ebner gland protein 1-like NW_004955513 2571693 2576942 + 102009408 AGCD01066882;GBBH01002065;XM_005408419 XP_005408476 MODEL 8704138 pseudo LOC102023954 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 pseudogene NW_004955543 959137 960309 + 102023954 AGCD01071608 MODEL 8777376 pseudo LOC102029521 protein YIF1A pseudogene NW_004955491 5428923 5430022 - 102029521 AGCD01060483 MODEL 8787014 ncrna LOC102007524 uncharacterized LOC102007524 NW_004955462 7283476 7285145 - 102007524 AGCD01049299;GBDF01181580;XR_263102 MODEL 8729827 pseudo LOC102021561 elongation factor 1-beta pseudogene NW_004955420 8719850 8724682 - 102021561 AGCD01020731 MODEL 10361912 protein-coding LOC106147328 endogenous retrovirus group K member 24 Gag polyprotein-like NW_004955543 55855 58418 - 106147328 AGCD01071555;GBDK01060559;XM_013508160 XP_013363614 MODEL 10162621 ncrna LOC106146494 uncharacterized LOC106146494 NW_004955481 5431020 5437551 - 106146494 AGCD01056977;GBDI01000538;XR_001230950 MODEL 8911006 ncrna LOC102027778 uncharacterized LOC102027778 NW_004955432 9343417 9346508 - 102027778 AGCD01030904;GBDF01178751;XR_261517 MODEL 8777594 protein-coding Six3 SIX homeobox 3 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN apoptotic process involved in development (ortholog); brain development (ortholog); camera-type eye development (ortholog); ASSOCIATED WITH genetic disease (ortholog); holoprosencephaly (ortholog); holoprosencephaly 2 (ortholog); FOUND IN nucleus (ortholog) NW_004955441 11966389 11978545 + 102007703 AGCD01037115;AGCD01037116;GBBH01065571;XM_005390963;XM_013517631 XP_005391020;XP_013373085 MODEL 8896589 protein-coding Eva1c eva-1 homolog C ENCODES a protein that exhibits heparin binding (ortholog); FOUND IN extracellular region (ortholog) NW_004955407 31934954 32043827 + 102016021 AGCD01007663;AGCD01007664;AGCD01007665;AGCD01007666;AGCD01007667;AGCD01007668;GBCE01085482;XM_005375667;XM_005375668;XM_005375669;XM_013504147;XM_013504151;XM_013504153 XP_005375724;XP_005375725;XP_005375726;XP_013359601;XP_013359605;XP_013359607 MODEL 10184216 pseudo LOC106149330 bromodomain adjacent to zinc finger domain protein 1A-like NW_004955443 7716726 7720310 - 106149330 AGCD01038296 MODEL 9002664 protein-coding LOC102025400 uncharacterized LOC102025400 NW_004955559 1652096 1655783 + 102025400 AGCD01073657;AGCD01073658;GBCB01053609;XM_005412913;XM_005412914 XP_005412970;XP_005412971 MODEL 8852590 pseudo LOC102009062 kinesin-associated protein 3-like NW_004955420 7992286 7995293 - 102009062 AGCD01020709 MODEL 8727981 protein-coding Tspan14 tetraspanin 14 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN positive regulation of Notch signaling pathway (ortholog); protein localization to plasma membrane (ortholog); protein maturation (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog); tetraspanin-enriched microdomain (ortholog) NW_004955510 463548 490635 + 102028319 AGCD01066149;AGCD01066150;GBDJ01088086;XM_005407874 XP_005407931 MODEL 10354891 ncrna LOC106150149 uncharacterized LOC106150149 NW_004955466 11737194 11739646 - 106150149 AGCD01051100;GBDF01160437;XR_001236779 MODEL 9039470 protein-coding LOC102006440 olfactory receptor 8D2-like NW_004955412 25129549 25130483 - 102006440 AGCD01013136;XM_013510980 XP_013366434 MODEL 8800998 pseudo LOC102028456 prefoldin subunit 1 pseudogene NW_004955519 2549295 2552575 - 102028456 AGCD01067937 MODEL 8780668 ncrna LOC102006062 uncharacterized LOC102006062 NW_004955432 9620240 9642499 + 102006062 AGCD01030909;XR_261520 MODEL 8953172 protein-coding Bop1 BOP1 ribosomal biogenesis factor ENCODES a protein that exhibits ribonucleoprotein complex binding (ortholog); INVOLVED IN cell population proliferation (ortholog); cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (ortholog); maturation of 5.8S rRNA (ortholog); PARTICIPATES IN ribosome biogenesis pathway; ASSOCIATED WITH Disease Progression (ortholog); Stomach Neoplasms (ortholog); FOUND IN chromosome (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955454 2882694 2907177 - 102026942 AGCD01045038;AGCD01045039;GBBH01143564;XM_005395860 XP_005395917 MODEL 10116900 ncrna LOC106146613 uncharacterized LOC106146613 NW_004955486 2064972 2068855 + 106146613 AGCD01058987;XR_001231136 MODEL 8936915 protein-coding Pom121l12 POM121 transmembrane nucleoporin like 12 NW_004955465 8249402 8251149 + 102007750 AGCD01050471;GBDF01221912;XM_005398875 XP_005398932 MODEL 8898401 protein-coding LOC102019776 interferon-inducible GTPase 1-like NW_004955408 5863062 5868671 + 102019776 AGCD01008158;GBDJ01218355;XM_005376159 XP_005376216 MODEL 8710554 protein-coding Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 ENCODES a protein that exhibits protein serine/threonine phosphatase activity (ortholog); INVOLVED IN hippocampus development (ortholog); protein dephosphorylation (ortholog); PARTICIPATES IN phosphatidylinositol 3-kinase-Akt signaling pathway; protein kinase C (PKC) signaling pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); intercellular bridge (ortholog) NW_004955484 4353950 4419891 - 102012539 AGCD01058210;AGCD01058211;AGCD01058212;GBCE01149912;GBDF01195815;XM_013503948 XP_013359402 MODEL 9053255 protein-coding LOC102024325 olfactory receptor 149 NW_004955412 24877990 24878925 + 102024325 AGCD01013130;XM_005378640 XP_005378697 MODEL 8942093 protein-coding LOC102003305 olfactory receptor 4F4-like NW_004955614 319933 320880 - 102003305 AGCD01077239;XM_005414977 XP_005415034 MODEL 10139975 ncrna LOC106146758 uncharacterized LOC106146758 NW_004955494 4499054 4511703 + 106146758 AGCD01061502;AGCD01061503;AGCD01061504;GBBH01155661;XR_001231333 MODEL 8798922 pseudo LOC102026795 uncharacterized LOC102026795 NW_004955534 3261987 3353541 + 102026795 AGCD01070576;AGCD01070577;AGCD01070578;AGCD01070579 MODEL 8897895 protein-coding Papss1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 ENCODES a protein that exhibits adenylylsulfate kinase activity (ortholog); protein homodimerization activity (ortholog); sulfate adenylyltransferase (ATP) activity (ortholog); INVOLVED IN 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process (ortholog); sulfate assimilation (ortholog); PARTICIPATES IN selenoamino acid metabolic pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955496 1993423 2057384 + 102006257 AGCD01062263;GBCQ01037113;XM_005406213;XM_005406214;XM_013505422;XM_013505423;XM_013505424 XP_005406270;XP_005406271;XP_013360876;XP_013360877;XP_013360878 MODEL 39133607 snrna U4 U4 spliceosomal RNA 9021106 ncrna LOC102030241 uncharacterized LOC102030241 NW_004955440 16256558 16258185 - 102030241 AGCD01036513;GBDF01303723;XR_001235253 MODEL 9000038 protein-coding LOC102004660 spermatogenesis-associated protein 31E1-like NW_004955637 27177 28652 - 102004660 AGCD01077641;GBDF01002545;GBDF01006017;XM_013510170 XP_013365624 MODEL 8753560 ncrna LOC102015581 uncharacterized LOC102015581 NW_004955589 627175 631403 - 102015581 AGCD01076179;GBDF01248806;XR_265121 MODEL 39133376 snorna SNORD70B small nucleolar RNA, C/D box 70B 8999009 protein-coding Leng1 leukocyte receptor cluster member 1 NW_004955604 106509 109564 + 102020509 AGCD01076862;AGCD01076863;GBBH01156148;GBCQ01098557;XM_013510091 XP_013365545 MODEL 8770323 protein-coding LOC102012181 G2/mitotic-specific cyclin-B1-like NW_004955413 26407831 26409562 - 102012181 AGCD01014441;XM_013511379 XP_013366833 MODEL 8773525 protein-coding Tgfb1 transforming growth factor beta 1 ENCODES a protein that exhibits cytokine activity (ortholog); enzyme binding (ortholog); growth factor activity (ortholog); INVOLVED IN adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains (ortholog); animal organ regeneration (ortholog); aortic valve morphogenesis (ortholog); PARTICIPATES IN altered transforming growth factor-beta Smad dependent signaling pathway; colorectal cancer pathway; glypican signaling pathway; ASSOCIATED WITH acromicric dysplasia (ortholog); actinic keratosis (ortholog); acute kidney failure (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955555 274405 288441 - 102014951 AGCD01073024;GBDF01304069;XM_005412338 XP_005412395 MODEL 9010191 protein-coding Igsf10 immunoglobulin superfamily member 10 INVOLVED IN ossification (ortholog); regulation of neuron migration (ortholog); tissue regeneration (ortholog); ASSOCIATED WITH Martsolf syndrome 1 (ortholog); Primary Ovarian Failure (ortholog); primary ovarian insufficiency (ortholog); FOUND IN extracellular region (ortholog) NW_004955448 2532973 2557650 - 102004340 AGCD01041283;GBDK01308425;XM_005393032;XM_005393033;XM_013518617 XP_005393089;XP_005393090;XP_013374071 MODEL 8741937 ncrna LOC102027137 uncharacterized LOC102027137 NW_004955452 4042960 4045203 - 102027137 AGCD01043963;GBBH01069461;XR_001236114 MODEL 8806269 protein-coding Srsf5 serine and arginine rich splicing factor 5 ENCODES a protein that exhibits protein kinase B binding (ortholog); RNA binding (ortholog); RS domain binding (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); liver development (ortholog); liver regeneration (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH breast cancer (ortholog); clear cell renal cell carcinoma (ortholog); colon adenocarcinoma (ortholog); FOUND IN nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955466 612221 617087 - 102026619 AGCD01050667;GBDJ01008234;XM_005399030;XM_005399031 XP_005399087;XP_005399088 MODEL 8947196 protein-coding LOC102018232 prostatic spermine-binding protein-like NW_004955442 14575069 14588232 - 102018232 AGCD01037827;AGCD01037828;AGCD01037829;GBDF01305030;XM_005391408;XM_005391409;XM_013517784 XP_005391465;XP_005391466;XP_013373238 MODEL 8964264 pseudo LOC102018643 tubulin alpha-1 chain-like NW_004955534 1689738 1691268 - 102018643 AGCD01070507 MODEL 9018760 protein-coding Pkp1 plakophilin 1 ENCODES a protein that exhibits DNA binding (ortholog); lamin binding (ortholog); INVOLVED IN ameloblast differentiation (ortholog); desmosome assembly (ortholog); desmosome maintenance (ortholog); ASSOCIATED WITH ectodermal dysplasia (ortholog); Ectodermal Dysplasia-Skin Fragility Syndrome (ortholog); genetic disease (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); desmosome (ortholog) NW_004955406 37420019 37465588 + 102012608 AGCD01006576;GBBH01066844;XM_005375169 XP_005375226 MODEL 8866376 protein-coding LOC102012632 olfactory receptor 52L1 NW_004955414 21869937 21870911 - 102012632 AGCD01015436;XM_005380106 XP_005380163 MODEL 8984149 protein-coding LOC102025724 HLA class II histocompatibility antigen, DP alpha 1 chain ENCODES a protein that exhibits peptide antigen binding (ortholog); INVOLVED IN antigen processing and presentation of exogenous peptide antigen via MHC class II (ortholog); cellular response to type II interferon (ortholog); positive regulation of T cell activation (ortholog); ASSOCIATED WITH allergic asthma (ortholog); asthma (ortholog); Chronic Hepatitis B (ortholog); FOUND IN cell surface (ortholog); MHC class II protein complex (ortholog) NW_004955437 1644037 1657094 - 102025724 AGCD01034224;GBCE01007193;XM_005389466;XM_005389467;XM_005389468 XP_005389523;XP_005389524;XP_005389525 MODEL 8981791 protein-coding Tnn tenascin N ENCODES a protein that exhibits identical protein binding (ortholog); integrin binding (ortholog); INVOLVED IN axonogenesis (ortholog); cell-matrix adhesion (ortholog); dendrite self-avoidance (ortholog); FOUND IN CA3 pyramidal cell dendrite (ortholog); cell surface (ortholog); extracellular matrix (ortholog) NW_004955406 14882414 14950572 + 102015073 AGCD01005975;GBDI01261146;XM_005374897;XM_005374898;XM_013520939 XP_005374954;XP_005374955;XP_013376393 MODEL 8998563 protein-coding Negr1 neuronal growth regulator 1 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN brain development (ortholog); cell-cell adhesion (ortholog); cholesterol homeostasis (ortholog); ASSOCIATED WITH obesity (ortholog); scrapie (ortholog); FOUND IN apical dendrite (ortholog); dendrite (ortholog); dendritic shaft (ortholog) NW_004955423 20011488 20816686 + 102004292 AGCD01023915;AGCD01023916;AGCD01023917;AGCD01023918;AGCD01023919;AGCD01023920;AGCD01023921;AGCD01023922;AGCD01023923;AGCD01023924;AGCD01023925;AGCD01023926;AGCD01023927;AGCD01023928;AGCD01023929;AGCD01023930;GBBH01135146;XM_005385243 XP_005385300 MODEL 8887928 pseudo LOC102007526 actin-related protein 10 pseudogene NW_004955463 6222350 6224556 + 102007526 AGCD01049659 MODEL 9028038 pseudo LOC102029527 40S ribosomal protein S19-like NW_004955422 27109967 27110387 + 102029527 AGCD01023312 MODEL 10385160 ncrna LOC106146495 uncharacterized LOC106146495 NW_004955481 5456638 5460681 + 106146495 AGCD01056978;AGCD01056979;XR_001230951 MODEL 8871990 pseudo LOC102003621 chromobox protein homolog 3 pseudogene NW_004955455 2292708 2293259 - 102003621 AGCD01045592;XM_005396565 MODEL 8943343 protein-coding Yif1a Yip1 interacting factor homolog A, membrane trafficking protein ASSOCIATED WITH Liver Neoplasms (ortholog); pre-malignant neoplasm (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog); endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog) NW_004955422 19028871 19032850 + 102016065 AGCD01022972;GBDF01046174;XM_005384420;XM_005384421 XP_005384477;XP_005384478 MODEL 8704761 protein-coding LOC102024327 cytokine receptor common subunit beta-like NW_004955413 23468980 23472461 - 102024327 AGCD01014332;GBDI01259559;XM_005379176;XR_260099 XP_005379233 MODEL 8878228 protein-coding Spmap1 sperm microtubule associated protein 1 NW_004955451 13888362 13891524 - 102020739 AGCD01043512;AGCD01043513;GBDF01000383;XM_005394287 XP_005394344 MODEL 9058367 ncrna LOC102003306 uncharacterized LOC102003306 NW_004955403 49841723 49842763 + 102003306 AGCD01002951;GBDF01153033;XR_259250 MODEL 8753675 protein-coding LOC102020806 olfactory receptor 14I1 NW_004955418 30137608 30139452 - 102020806 AGCD01019506;XM_005382334 XP_005382391 MODEL 8982731 protein-coding Papss2 3'-phosphoadenosine 5'-phosphosulfate synthase 2 ENCODES a protein that exhibits adenylylsulfate kinase activity (ortholog); sulfate adenylyltransferase (ATP) activity (ortholog); INVOLVED IN 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process (ortholog); blood coagulation (ortholog); bone development (ortholog); PARTICIPATES IN sulfite oxidase deficiency pathway; ASSOCIATED WITH brachyolmia (ortholog); genetic disease (ortholog); spondyloepimetaphyseal dysplasia, Pakistani type (ortholog); FOUND IN cytosol (ortholog); nucleus (ortholog) NW_004955425 5186232 5259080 - 102027425 AGCD01025336;GBBH01164256;GBDK01231823;XM_005385890 XP_005385947 MODEL 8810371 pseudo LOC102006441 rRNA-processing protein UTP23 homolog pseudogene NW_004955412 35586005 35587704 - 102006441 AGCD01013412 MODEL 10164178 ncrna LOC106150150 uncharacterized LOC106150150 NW_004955466 2661650 2664696 - 106150150 AGCD01050752;GBCE01030905;XR_001236782 MODEL 8934314 ncrna LOC102023955 uncharacterized LOC102023955 NW_004955545 518387 525432 + 102023955 AGCD01071798;AGCD01071799;GBDF01054218;XR_264866 MODEL 10324220 ncrna LOC106147329 uncharacterized LOC106147329 NW_004955544 224030 229312 - 106147329 AGCD01071698;GBDK01104411;XR_001232172 MODEL 10290015 ncrna LOC106147043 uncharacterized LOC106147043 NW_004955513 1100891 1101980 - 106147043 AGCD01066841;GBDK01313714;XR_001231736 MODEL 10082243 ncrna LOC106150151 uncharacterized LOC106150151 NW_004955466 5399885 5402744 + 106150151 AGCD01050879;GBDF01176513;XR_001236783 MODEL 10294488 pseudo LOC106149331 uncharacterized LOC106149331 NW_004955443 7829542 7850315 + 106149331 AGCD01038298 MODEL 8818755 protein-coding Six4 SIX homeobox 4 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN embryonic cranial skeleton morphogenesis (ortholog); embryonic skeletal system morphogenesis (ortholog); fungiform papilla morphogenesis (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955466 8902728 8915685 + 102014993 AGCD01051004;AGCD01051005;GBDI01052983;XM_005399170;XM_005399171;XM_005399172;XM_013521927 XP_005399227;XP_005399228;XP_005399229;XP_013377381 MODEL 8844732 protein-coding LOC102006443 natural killer cells antigen CD94-like NW_004955413 7595934 7604789 - 102006443 AGCD01013826;AGCD01013827;GBDF01001494;XM_005378931;XR_260067;XR_260068 XP_005378988 MODEL 8753209 protein-coding LOC102025404 leukocyte immunoglobulin-like receptor subfamily A member 6 NW_004955567 1318000 1322175 - 102025404 AGCD01074467;GBDK01305379;XM_013509219 XP_013364673 MODEL 9023803 protein-coding Pkp2 plakophilin 2 ENCODES a protein that exhibits alpha-catenin binding (ortholog); DNA binding (ortholog); intermediate filament binding (ortholog); INVOLVED IN adherens junction maintenance (ortholog); bundle of His cell-Purkinje myocyte adhesion involved in cell communication (ortholog); cardiac muscle cell action potential (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); arrhythmogenic right ventricular dysplasia 1 (ortholog); FOUND IN adherens junction (ortholog); anchoring junction (ortholog); cell junction (ortholog) NW_004955505 2878001 2959299 + 102026770 AGCD01065008;AGCD01065009;GBBH01214867;GBDK01128347;XM_013505957 XP_013361411 MODEL 10262050 ncrna LOC106146759 uncharacterized LOC106146759 NW_004955407 38972842 38974683 - 106146759 AGCD01007816;GBBH01192268;XR_001231334 MODEL 8968174 protein-coding LOC102010231 uncharacterized LOC102010231 NW_004955408 30891040 30894592 + 102010231 AGCD01008817;GBDF01045340;XM_005376478;XR_259728 XP_005376535 MODEL 10355191 ncrna LOC106146496 uncharacterized LOC106146496 NW_004955482 2844756 2848145 - 106146496 AGCD01057256;GBCE01059325;XR_001230952 MODEL 8807874 ncrna LOC102026799 uncharacterized LOC102026799 NW_004955438 19728867 19761378 + 102026799 AGCD01035498;AGCD01035499;GBBH01158271;XR_001235120;XR_261948;XR_261949;XR_261950 MODEL 8821023 protein-coding Krt79 keratin 79 ENCODES a protein that exhibits enzyme binding (ortholog) NW_004955458 121681 132775 - 102008292 AGCD01047106;GBCQ01115306;XM_005397130 XP_005397187 MODEL 8961688 protein-coding LOC102030242 olfactory receptor 4E1 NW_004955550 2359068 2360033 - 102030242 AGCD01072625;XM_005412153 XP_005412210 MODEL 8896414 pseudo LOC102009409 unconventional prefoldin RPB5 interactor 1 pseudogene NW_004955431 245211 246820 + 102009409 AGCD01029861 MODEL 8817903 ncrna LOC102006066 uncharacterized LOC102006066 NW_004955518 1072445 1103749 + 102006066 AGCD01067755;AGCD01067756;GBDF01079167;XR_264564 MODEL 10132129 ncrna LOC106146614 uncharacterized LOC106146614 NW_004955486 4060464 4064386 + 106146614 AGCD01059051;AGCD01059052;GBCB01122109;XR_001231138 MODEL 8890048 ncrna LOC102021564 uncharacterized LOC102021564 NW_004955422 29420063 29427084 + 102021564 AGCD01023393;GBDF01255637;XR_001233889 MODEL 8930364 protein-coding Spmap2 sperm microtubule associated protein 2 INVOLVED IN spermatogenesis (ortholog) NW_004955495 7261378 7269390 + 102025595 AGCD01062128;AGCD01062129;GBDF01007138;XM_005406042;XM_005406043;XM_005406044;XM_005406045 XP_005406099;XP_005406100;XP_005406101;XP_005406102 MODEL 8958384 protein-coding Pom121l2 POM121 transmembrane nucleoporin like 2 NW_004955465 13175383 13178722 - 102003954 AGCD01050591;GBDF01007095;XM_005399007 XP_005399064 MODEL 8818532 protein-coding Tgfb1i1 transforming growth factor beta 1 induced transcript 1 ENCODES a protein that exhibits I-SMAD binding (ortholog); nuclear androgen receptor binding (ortholog); Roundabout binding (ortholog); INVOLVED IN cell fate commitment (ortholog); epithelial cell differentiation (ortholog); morphogenesis of embryonic epithelium (ortholog); FOUND IN focal adhesion (ortholog) NW_004955493 8309480 8315378 + 102007026 AGCD01061290;AGCD01061291;GBDK01133943;XM_005405320;XM_005405322;XM_013504900;XM_013504901;XM_013504902;XM_013504903 XP_005405377;XP_005405379;XP_013360354;XP_013360355;XP_013360356;XP_013360357 MODEL 9052373 protein-coding Slc36a4 solute carrier family 36 member 4 ENCODES a protein that exhibits L-alanine transmembrane transporter activity (ortholog); L-proline transmembrane transporter activity (ortholog); L-tryptophan transmembrane transporter activity (ortholog); INVOLVED IN L-alanine transport (ortholog); proline transport (ortholog); tryptophan transport (ortholog); PARTICIPATES IN nicotinamide adenine dinucleotide metabolic pathway; FOUND IN lysosomal membrane (ortholog) NW_004955414 1236179 1286680 + 102028078 AGCD01014760;GBCE01159453;XM_005379715;XM_005379716;XM_005379717;XM_005379718;XM_005379719;XM_013512056;XM_013512057 XP_005379772;XP_005379773;XP_005379774;XP_005379775;XP_005379776;XP_013367510;XP_013367511 MODEL 8900387 protein-coding LOC102020809 uncharacterized LOC102020809 NW_004955487 9120669 9125892 + 102020809 AGCD01059452;GBDF01190977;XM_013504349;XM_013504350;XM_013504351 XP_013359803;XP_013359804;XP_013359805 MODEL 8999719 protein-coding LOC102019780 uncharacterized LOC102019780 NW_004955409 8008074 8010374 - 102019780 AGCD01009374;XM_005376728 XP_005376785 MODEL 8840932 ncrna LOC102018644 uncharacterized LOC102018644 NW_004955536 3109313 3110744 + 102018644 AGCD01070809;GBDF01306563;XR_001232063;XR_001232064 MODEL 8964443 protein-coding Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 ENCODES a protein that exhibits phosphocholine phosphatase activity (ortholog); phosphoethanolamine phosphatase activity (ortholog); pyrophosphatase activity (ortholog); INVOLVED IN bone mineralization (ortholog); bone mineralization involved in bone maturation (ortholog); endochondral ossification (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; ASSOCIATED WITH Metabolic Bone Diseases (ortholog); FOUND IN extracellular matrix (ortholog); extracellular membrane-bounded organelle (ortholog) NW_004955451 12232465 12240864 + 102026280 AGCD01043379;GBDK01415172;XM_005394214;XM_005394215;XM_005394216;XM_005394217;XM_005394218;XM_013519112 XP_005394271;XP_005394272;XP_005394273;XP_005394274;XP_005394275;XP_013374566 MODEL 9007447 pseudo LOC102027781 nucleophosmin-like NW_004955435 2343618 2345126 + 102027781 AGCD01032759 MODEL 9010431 protein-coding LOC102012634 olfactory receptor 481 NW_004955414 23630286 23633450 + 102012634 AGCD01015508;AGCD01015509;XM_005380206 XP_005380263 MODEL 8766280 pseudo LOC102009073 uncharacterized LOC102009073 NW_004955422 6052412 6078239 - 102009073 AGCD01022588;AGCD01022589 MODEL 8905341 protein-coding Evc EvC ciliary complex subunit 1 INVOLVED IN cartilage development (ortholog); endochondral bone growth (ortholog); positive regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH Ellis-Van Creveld syndrome (ortholog); genetic disease (ortholog); nephronophthisis (ortholog); FOUND IN ciliary basal body (ortholog); ciliary membrane (ortholog); cilium (ortholog) NW_004955514 4279603 4330897 - 102022418 AGCD01067129;AGCD01067130;AGCD01067131;GBCQ01005915;XM_013506839;XM_013506840;XM_013506841;XR_001231780 XP_013362293;XP_013362294;XP_013362295 MODEL 8934411 protein-coding Scn5a sodium voltage-gated channel alpha subunit 5 ENCODES a protein that exhibits ankyrin binding (ortholog); calmodulin binding (ortholog); enzyme binding (ortholog); INVOLVED IN atrial cardiac muscle cell action potential (ortholog); AV node cell action potential (ortholog); AV node cell to bundle of His cell communication (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrial fibrillation (ortholog); atrial standstill 1 (ortholog); FOUND IN anchoring junction (ortholog); caveola (ortholog); cell surface (ortholog) NW_004955427 25295517 25371419 + 102030218 AGCD01027538;GBCE01158045;XM_005386578;XM_005386579;XM_005386580;XM_005386584;XM_005386585;XM_005386587;XM_013515220;XM_013515221 XP_005386635;XP_005386636;XP_005386637;XP_005386641;XP_005386642;XP_005386644;XP_013370674;XP_013370675 MODEL 8713631 protein-coding Tspan15 tetraspanin 15 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN negative regulation of Notch signaling pathway (ortholog); protein localization to plasma membrane (ortholog); protein maturation (ortholog); FOUND IN cell surface (ortholog); late endosome membrane (ortholog); plasma membrane (ortholog) NW_004955437 21643018 21687355 - 102022633 AGCD01034919;GBDI01066539;XM_005390084;XM_013517075;XM_013517076 XP_005390141;XP_013372529;XP_013372530 MODEL 8856998 pseudo LOC102015585 pre-mRNA-splicing factor 38A pseudogene NW_004955402 63168495 63172523 + 102015585 AGCD01001661 MODEL 150537106 snorna SNORD71 small nucleolar RNA, C/D box 71 8715778 ncrna LOC102024328 uncharacterized LOC102024328 NW_004955471 6006346 6008801 - 102024328 AGCD01053116;GBDF01188582;XR_001237053 MODEL 8788569 protein-coding Yif1b Yip1 interacting factor homolog B, membrane trafficking protein INVOLVED IN cilium assembly (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); protein targeting to membrane (ortholog); ASSOCIATED WITH genetic disease (ortholog); Kaya-Barakat-Masson Syndrome (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955468 1123924 1133292 + 102017215 AGCD01051757;GBDF01002958;XM_005399857;XM_005399858;XM_005399859;XM_005399860;XM_005399861;XM_005399862;XM_005399864;XM_005399865 XP_005399914;XP_005399915;XP_005399916;XP_005399917;XP_005399918;XP_005399919;XP_005399921;XP_005399922 MODEL 8849045 protein-coding Leng8 leukocyte receptor cluster member 8 NW_004955567 1539537 1552170 + 102012911 AGCD01074480;AGCD01074481;GBDJ01334723;XM_005413378;XM_005413379;XM_013509248 XP_005413435;XP_005413436;XP_013364702 MODEL 8838226 pseudo LOC102012184 U1 small nuclear ribonucleoprotein A pseudogene NW_004955413 587042 587756 + 102012184 AGCD01013481 MODEL 8955571 protein-coding Bora BORA aurora kinase A activator ENCODES a protein that exhibits protein kinase binding (ortholog); INVOLVED IN regulation of mitotic nuclear division (ortholog); regulation of mitotic spindle organization (ortholog); regulation of protein localization (ortholog); FOUND IN meiotic spindle (ortholog) NW_004955404 33923496 33946113 - 102027935 AGCD01004084;GBBH01137438;XM_005374192;XM_005374193 XP_005374249;XP_005374250 MODEL 10178236 protein-coding LOC106148132 uncharacterized LOC106148132 NW_004955416 10112563 10113322 - 106148132 AGCD01017106;GBDJ01263246;GBDK01061603;XM_013512459 XP_013367913 MODEL 8896804 protein-coding Srsf6 serine and arginine rich splicing factor 6 ENCODES a protein that exhibits pre-mRNA binding (ortholog); RNA binding (ortholog); INVOLVED IN alternative mRNA splicing, via spliceosome (ortholog); mRNA splice site recognition (ortholog); negative regulation of gene expression (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH clear cell renal cell carcinoma (ortholog); colon adenocarcinoma (ortholog); Epidermal Hyperplasia (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog) NW_004955445 13663474 13669102 - 102026583 AGCD01039800;GBCE01012102;XM_005392500 XP_005392557 MODEL 8904366 protein-coding LOC102030243 conserved oligomeric Golgi complex subunit 1-like NW_004955553 220819 231374 + 102030243 AGCD01072847;AGCD01072848;AGCD01072849;GBCE01005501;GBDK01002958;XM_013508620 XP_013364074 MODEL 8764753 protein-coding LOC102025731 poliovirus receptor NW_004955555 1816843 1830188 + 102025731 AGCD01073104;GBCB01024334;GBDI01206765;XM_005412471 XP_005412528 MODEL 9027402 protein-coding Tnnc1 troponin C1, slow skeletal and cardiac type ENCODES a protein that exhibits actin filament binding (ortholog); calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); INVOLVED IN cardiac muscle cell contraction (ortholog); cardiac muscle contraction (ortholog); diaphragm contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH cardiomyopathy (ortholog); dilated cardiomyopathy (ortholog); dilated cardiomyopathy 1S (ortholog); FOUND IN cardiac Troponin complex (ortholog); contractile muscle fiber (ortholog); troponin complex (ortholog) NW_004955430 2438644 2441596 - 102017148 AGCD01029166;GBDJ01349702;XM_005387319 XP_005387376 MODEL 8796021 protein-coding LOC102004662 interleukin-3 receptor subunit alpha-like NW_004956002 9149 9686 - 102004662 AGCD01078846;GBCE01069509;GBDK01099765;XM_005415160 XP_005415217 MODEL 8877656 protein-coding Pomc proopiomelanocortin ENCODES a protein that exhibits G protein-coupled receptor binding (ortholog); hormone activity (ortholog); receptor ligand activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); calcium-mediated signaling (ortholog); cell-cell signaling (ortholog); PARTICIPATES IN alfentanil pharmacodynamics pathway; altered energy homeostasis pathway; altered melanocortin system pathway; ASSOCIATED WITH ACTH Syndrome, Ectopic (ortholog); acute kidney failure (ortholog); acute kidney tubular necrosis (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); neuronal cell body (ortholog) NW_004955469 7217233 7220401 - 102003750 AGCD01052411;GBDF01002960;XM_005400399;XM_013522557 XP_005400456;XP_013378011 MODEL 8988136 pseudo LOC102003307 uncharacterized protein C12orf31 homolog pseudogene NW_004955451 1129592 1137451 - 102003307 AGCD01042960 MODEL 8802796 protein-coding LOC102006450 cytochrome c oxidase assembly factor 5 INVOLVED IN leukocyte differentiation (ortholog); multicellular organism growth (ortholog); spleen development (ortholog); ASSOCIATED WITH mitochondrial complex IV deficiency nuclear type 2 (ortholog); mitochondrial complex IV deficiency nuclear type 9 (ortholog); FOUND IN mitochondrion (ortholog) NW_004955470 5042072 5051007 - 102006450 AGCD01052743;GBCE01159196;XM_005400725 XP_005400782 MODEL 8708380 pseudo LOC102010232 suppressor of cytokine signaling 5-like NW_004955458 3896343 3898873 + 102010232 AGCD01047353 MODEL 8727967 pseudo LOC102027141 dnaJ homolog subfamily A member 1-like NW_004955453 12648342 12650208 + 102027141 AGCD01044835 MODEL 9010083 ncrna LOC102026800 uncharacterized LOC102026800 NW_004955439 1017868 1021208 + 102026800 AGCD01035595;XR_261960 MODEL 8987885 protein-coding Pkp3 plakophilin 3 ENCODES a protein that exhibits alpha-catenin binding (ortholog); cell adhesion molecule binding (ortholog); enzyme binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); desmosome assembly (ortholog); desmosome organization (ortholog); ASSOCIATED WITH lymphopenia (ortholog); neutropenia (ortholog); Prostatic Neoplasms (ortholog); FOUND IN adherens junction (ortholog); cell junction (ortholog); cell-cell junction (ortholog) NW_004955476 11611240 11619210 - 102024793 AGCD01055466;GBCQ01150316;XM_005401870 XP_005401927 MODEL 10098284 pseudo LOC106146497 transmembrane protein 132B-like NW_004955482 3470778 3472398 - 106146497 AGCD01057265 MODEL 9062925 pseudo LOC102009413 protein PBDC1 pseudogene NW_004955433 10564178 10564675 + 102009413 AGCD01031632 MODEL 9062049 ncrna LOC102006068 uncharacterized LOC102006068 NW_004955522 4443395 4446145 - 102006068 AGCD01068417;GBDF01236174;XR_001231902 MODEL 8724134 protein-coding Paqr3 progestin and adipoQ receptor family member 3 ENCODES a protein that exhibits protein-membrane adaptor activity (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN negative regulation of MAP kinase activity (ortholog); negative regulation of neuron projection development (ortholog); negative regulation of peptidyl-serine phosphorylation (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955433 3323426 3350358 - 102022216 AGCD01031420;GBCB01073899;XM_005388211;XM_005388212;XM_005388213;XM_013516174;XR_261551 XP_005388268;XP_005388269;XP_005388270;XP_013371628 MODEL 9008245 pseudo LOC102023956 NKAP-like protein NW_004955439 11386279 11387735 - 102023956 AGCD01035904 MODEL 8925478 protein-coding Yipf1 Yip1 domain family member 1 FOUND IN Golgi apparatus (ortholog); Golgi medial cisterna (ortholog); Golgi trans cisterna (ortholog) NW_004955464 5369690 5408470 + 102009700 AGCD01050006;GBDF01051315;XM_005398553;XM_005398554;XM_005398555 XP_005398610;XP_005398611;XP_005398612 MODEL 8746772 ncrna LOC102029531 uncharacterized LOC102029531 NW_004955424 23869617 23885147 - 102029531 AGCD01025018;GBDF01162288;XR_001234148;XR_261106 MODEL 8881541 protein-coding Txnrd3 thioredoxin reductase 3 ENCODES a protein that exhibits thioredoxin-disulfide reductase (NADPH) activity (ortholog); INVOLVED IN blastocyst formation (ortholog); glutathione metabolic process (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); colorectal adenoma (ortholog); colorectal carcinoma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955429 16845466 16880481 + 102022949 AGCD01028839;GBCE01069985;GBDI01384403;XM_005387260 XP_005387317 MODEL 8845434 pseudo LOC102028457 ATP-dependent RNA helicase DDX50 pseudogene NW_004955520 561441 567800 - 102028457 AGCD01068025 MODEL 10170201 ncrna LOC106147044 uncharacterized LOC106147044 NW_004955408 13798124 13900634 - 106147044 AGCD01008374;AGCD01008375;AGCD01008376;GBDF01293966;XR_001231737;XR_001231738 MODEL 8780679 protein-coding Tgfb2 transforming growth factor beta 2 ENCODES a protein that exhibits amyloid-beta binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN ascending aorta morphogenesis (ortholog); atrial septum morphogenesis (ortholog); atrial septum primum morphogenesis (ortholog); PARTICIPATES IN glypican signaling pathway; Hedgehog signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH Aberrant Crypt Foci (ortholog); aortic aneurysm (ortholog); aortic disease (ortholog); FOUND IN axon (ortholog); basement membrane (ortholog); cell surface (ortholog) NW_004955406 174949 249248 - 102006205 AGCD01005613;AGCD01005614;GBCQ01014446;XM_005374702;XM_005374703 XP_005374759;XP_005374760 MODEL 8893790 pseudo LOC102012636 40S ribosomal protein S2 pseudogene NW_004955472 1057016 1058005 - 102012636 AGCD01053370 MODEL 8902871 ncrna LOC102009080 uncharacterized LOC102009080 NW_004955502 7625008 7627557 + 102009080 AGCD01064452;GBDF01238432;XR_264267 MODEL 8886854 protein-coding Phospho2 phosphatase, orphan 2 ENCODES a protein that exhibits pyridoxal phosphatase activity (ortholog) NW_004955449 4877521 4885927 - 102026056 AGCD01041902;GBDJ01062648;XM_005393250;XM_005393251;XM_013518730;XM_013518731 XP_005393307;XP_005393308;XP_013374184;XP_013374185 MODEL 10354244 pseudo LOC106149332 uncharacterized LOC106149332 NW_004955443 7849831 7851410 + 106149332 AGCD01038298 MODEL 8765195 protein-coding Igsf11 immunoglobulin superfamily member 11 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); INVOLVED IN homophilic cell-cell adhesion (ortholog); maintenance of protein location (ortholog); positive regulation of long-term synaptic potentiation (ortholog); FOUND IN cell-cell junction (ortholog); excitatory synapse (ortholog); glutamatergic synapse (ortholog) NW_004955427 18698774 18716669 - 102021994 AGCD01027348;GBDF01007359;GBDJ01318281;XM_013515231 XP_013370685 MODEL 8814980 ncrna LOC102007527 uncharacterized LOC102007527 NW_004955465 7812882 7828643 - 102007527 AGCD01050469;GBDF01276911;XR_263251 MODEL 10231724 ncrna LOC106147330 uncharacterized LOC106147330 NW_004955544 3147637 3168448 - 106147330 AGCD01071749;GBCE01066292;XR_001232173;XR_001232174 MODEL 8722393 ncrna LOC102003630 uncharacterized LOC102003630 NW_004955461 9207794 9213408 + 102003630 AGCD01048943;GBDF01222087;XR_001236550;XR_001236551;XR_001236552 MODEL 10171679 ncrna LOC106148133 uncharacterized LOC106148133 NW_004955416 2184797 2194271 - 106148133 AGCD01016851;XR_001233296 MODEL 8912663 protein-coding Spmap2l sperm microtubule associated protein 2 like NW_004955447 14454884 14496320 - 102006511 AGCD01041006;GBDF01000151;XM_013518495;XM_013518496 XP_013373949;XP_013373950 MODEL 8729687 protein-coding Borcs5 BLOC-1 related complex subunit 5 INVOLVED IN axon development (ortholog); lysosome localization (ortholog); mitochondrion organization (ortholog); ASSOCIATED WITH Agenesis of Corpus Callosum (ortholog); colorectal adenocarcinoma (ortholog); FOUND IN axon (ortholog); BORC complex (ortholog); cytoplasmic side of lysosomal membrane (ortholog) NW_004955413 9309766 9399378 + 102015707 AGCD01013902;AGCD01013903;GBCE01187874;XM_005378962;XM_005378964;XM_013511430;XM_013511431 XP_005379019;XP_005379021;XP_013366884;XP_013366885 MODEL 8970130 protein-coding Pkp4 plakophilin 4 INVOLVED IN cell-cell junction assembly (ortholog); positive regulation of cytokinesis (ortholog); regulation of Rho protein signal transduction (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN cell junction (ortholog); cell-cell contact zone (ortholog); cell-cell junction (ortholog) NW_004955449 14835423 15050237 - 102009238 AGCD01042179;AGCD01042180;GBCE01076404;GBDJ01140016;XM_005393383;XM_005393387;XM_013518709;XM_013518710;XM_013518711;XM_013518712;XM_013518713;XM_013518714 XP_005393440;XP_005393444;XP_013374163;XP_013374164;XP_013374165;XP_013374166;XP_013374167;XP_013374168 MODEL 8833237 ncrna LOC102020810 uncharacterized LOC102020810 NW_004955422 2499651 2506235 - 102020810 AGCD01022485;GBDF01145109;XR_260848 MODEL 8987360 protein-coding LOC102027782 translation initiation factor IF-2-like NW_004955524 2990573 2993026 - 102027782 AGCD01068846;GBBH01225236;XM_013507287 XP_013362741 MODEL 10066196 ncrna LOC106150152 uncharacterized LOC106150152 NW_004955466 1839722 1842302 + 106150152 AGCD01050718;GBCE01181594;XR_001236792 MODEL 8871834 protein-coding LOC102025405 translation initiation factor IF-2-like NW_004955445 7021605 7022894 - 102025405 AGCD01039531;AGCD01039532;GBDF01047850;XM_005392570 XP_005392627 MODEL 8893441 protein-coding Slc37a1 solute carrier family 37 member 1 ENCODES a protein that exhibits glucose 6-phosphate:phosphate antiporter activity (ortholog); INVOLVED IN glucose-6-phosphate transport (ortholog); phosphate ion transmembrane transport (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955407 39203934 39268273 - 102010551 AGCD01007823;AGCD01007824;GBBH01090368;XM_005375814;XM_005375818;XM_005375819;XM_005375820;XM_005375822;XR_001231341;XR_001231343 XP_005375871;XP_005375875;XP_005375876;XP_005375877;XP_005375879 MODEL 10238123 ncrna LOC106146760 uncharacterized LOC106146760 NW_004955495 3611006 3621316 - 106146760 AGCD01061869;AGCD01061870;GBCE01139502;XR_001231335 MODEL 9034724 protein-coding Six5 SIX homeobox 5 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN lens development in camera-type eye (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH branchiootorenal syndrome (ortholog); branchiootorenal syndrome 2 (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955574 221635 225474 - 102016326 AGCD01075092;AGCD01075093;GBBH01185502;GBCE01137897;XM_013509516 XP_013364970 MODEL 8780315 protein-coding Evc2 EvC ciliary complex subunit 2 INVOLVED IN smoothened signaling pathway (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); Beemer-Langer syndrome (ortholog); FOUND IN ciliary membrane (ortholog); cilium (ortholog); nucleus (ortholog) NW_004955514 4332624 4430844 + 102023182 AGCD01067131;AGCD01067132;AGCD01067133;GBDK01357154;XM_005408823;XM_005408825;XM_005408826;XM_005408827;XM_013506842;XM_013506843;XM_013506844 XP_005408880;XP_005408882;XP_005408883;XP_005408884;XP_013362296;XP_013362297;XP_013362298 MODEL 8919417 protein-coding Tnnc2 troponin C2, fast skeletal type ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN regulation of muscle contraction (ortholog); skeletal muscle contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH congenital myopathy 15 (ortholog); FOUND IN troponin complex (ortholog) NW_004955445 11466579 11469123 + 102028244 AGCD01039695;GBDJ01423779;XM_005392409 XP_005392466 MODEL 8927679 pseudo LOC102018233 heat shock cognate 71 kDa protein pseudogene NW_004955557 808259 809210 + 102018233 AGCD01073262 MODEL 8749760 protein-coding Krt8 keratin 8 ENCODES a protein that exhibits protein-containing complex binding (ortholog); scaffold protein binding (ortholog); INVOLVED IN cell differentiation involved in embryonic placenta development (ortholog); epithelium development (ortholog); extrinsic apoptotic signaling pathway (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); adenocarcinoma (ortholog); Breast Neoplasms (ortholog); FOUND IN apicolateral plasma membrane (ortholog); cell periphery (ortholog); cell-cell junction (ortholog) NW_004955458 178954 190310 - 102012164 AGCD01047108;AGCD01047109;AGCD01047110;GBCE01007276;GBDJ01019216;XM_005397487 XP_005397544 MODEL 8788162 protein-coding LOC102028461 chromosome unknown open reading frame, human C1orf162 ASSOCIATED WITH COVID-19 (ortholog) NW_004955435 14955487 14962007 + 102028461 AGCD01033258;GBCE01011157;XM_013516499;XM_013516500 XP_013371953;XP_013371954 MODEL 150537110 snorna SNORD72 small nucleolar RNA, C/D box 72 10384226 ncrna LOC106146615 uncharacterized LOC106146615 NW_004955486 4899323 4909409 + 106146615 AGCD01059071;AGCD01059072;GBDF01180160;XR_001231142 MODEL 9036177 protein-coding LOC102015587 olfactory receptor 2T8-like NW_004955619 202710 203666 - 102015587 AGCD01077348;XM_005415010 XP_005415067 MODEL 8723546 protein-coding Tspan16 tetraspanin 16 NW_004955495 2234098 2249884 + 102018409 AGCD01061756;AGCD01061757;AGCD01061758;AGCD01061759;GBDF01001019;GBDF01058236;XM_005405647;XM_005405648 XP_005405704;XP_005405705 MODEL 8782289 protein-coding LOC102021565 zinc finger protein 699 NW_004955495 832127 842376 - 102021565 AGCD01061657;GBDJ01173724;XM_005405565 XP_005405622 MODEL 8836724 pseudo LOC102006453 small ubiquitin-related modifier 2-like NW_004955476 1102626 1103054 - 102006453 AGCD01055200 MODEL 8746767 protein-coding Leng9 leukocyte receptor cluster member 9 ASSOCIATED WITH myoepithelioma (ortholog) NW_004955567 1551379 1558261 - 102027020 AGCD01074481;AGCD01074482;GBCE01142248;GBDJ01073632;XM_005413414 XP_005413471 MODEL 8953301 protein-coding Neil1 nei like DNA glycosylase 1 ENCODES a protein that exhibits DNA N-glycosylase activity (ortholog); hydrolase activity, acting on glycosyl bonds (ortholog); lyase activity (ortholog); INVOLVED IN base-excision repair (ortholog); DNA repair (ortholog); ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); Dyslipidemias (ortholog); familial hyperlipidemia (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955450 2883344 2889593 - 102029574 AGCD01042410;GBCE01009131;XM_005393515;XM_005393516;XM_005393517;XM_005393518;XM_005393519 XP_005393572;XP_005393573;XP_005393574;XP_005393575;XP_005393576 MODEL 8980221 protein-coding Igsf21 immunoglobin superfamily member 21 INVOLVED IN synapse maturation (ortholog); trans-synaptic signaling, modulating synaptic transmission (ortholog); ASSOCIATED WITH urinary bladder cancer (ortholog); FOUND IN external side of plasma membrane (ortholog); inhibitory synapse (ortholog); postsynaptic density membrane (ortholog) NW_004955527 773340 994679 - 102020371 AGCD01069387;GBCQ01162091;GBDF01111574;XM_005409806 XP_005409863 MODEL 9004993 protein-coding LOC102019781 solute carrier family 22 member 17 NW_004955409 36988460 36990937 + 102019781 AGCD01010486;XM_013510429 XP_013365883 MODEL 8915228 ncrna LOC102030246 uncharacterized LOC102030246 NW_004955555 2075595 2076187 - 102030246 AGCD01073129;GBDJ01025684;XR_264971 MODEL 10089843 ncrna LOC106147331 uncharacterized LOC106147331 NW_004955544 369012 369739 + 106147331 AGCD01071704;GBDK01042139;XR_001232175 MODEL 8732000 pseudo LOC102003632 60S ribosomal protein L35a pseudogene NW_004955462 10954407 10954736 - 102003632 AGCD01049379;XM_005398243 MODEL 8883751 protein-coding Scn7a sodium voltage-gated channel alpha subunit 7 ENCODES a protein that exhibits osmolarity-sensing monoatomic cation channel activity (ortholog); sodium channel activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN membrane depolarization during action potential (ortholog); neuronal action potential (ortholog); osmosensory signaling pathway (ortholog); ASSOCIATED WITH autistic disorder (ortholog); brain infarction (ortholog); FOUND IN glial cell projection (ortholog); plasma membrane (ortholog); voltage-gated sodium channel complex (ortholog) NW_004955449 7714424 7798383 + 102008907 AGCD01041994;AGCD01041995;AGCD01041996;AGCD01041997;GBBH01046787;XM_005393284 XP_005393341 MODEL 8984941 protein-coding Pomgnt1 protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-) ENCODES a protein that exhibits acetylglucosaminyltransferase activity (ortholog); beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity (ortholog); manganese ion binding (ortholog); INVOLVED IN basement membrane organization (ortholog); brain development (ortholog); dentate gyrus development (ortholog); ASSOCIATED WITH autosomal recessive limb-girdle muscular dystrophy type 2O (ortholog); congenital muscular dystrophy (ortholog); congenital muscular dystrophy-dystroglycanopathy type A3 (ortholog); FOUND IN Golgi membrane (ortholog); membrane (ortholog) NW_004955464 12076815 12086961 + 102022683 AGCD01050179;AGCD01050180;GBBH01142608;GBCC01026286;XM_013521599 XP_013377053 MODEL 8974001 protein-coding LOC102012188 vomeronasal type-1 receptor 90-like NW_004955414 14997711 14998679 - 102012188 AGCD01015167;XM_005380441 XP_005380498 MODEL 10211848 protein-coding LOC106149333 uncharacterized LOC106149333 NW_004955443 7854437 7861584 - 106149333 AGCD01038299;AGCD01038300;GBDJ01281513;XM_013518036 XP_013373490 MODEL 8708144 protein-coding Tgfb3 transforming growth factor beta 3 ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); transforming growth factor beta binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); cell-cell junction organization (ortholog); cellular response to growth factor stimulus (ortholog); PARTICIPATES IN glypican signaling pathway; transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); arrhythmogenic right ventricular dysplasia 1 (ortholog); Brugada syndrome (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955438 33129 55180 - 102026475 AGCD01034940;GBCE01098971;XM_005390146 XP_005390203 MODEL 8826229 pseudo LOC102026802 RNA-binding protein with serine-rich domain 1 pseudogene NW_004955545 2483592 2484530 - 102026802 AGCD01071906 MODEL 10162627 protein-coding LOC106146498 collagen alpha chain-like NW_004955482 6554719 6555196 + 106146498 AGCD01057403;GBDI01035915;XM_013503537 XP_013358991 MODEL 8747588 pseudo LOC102009415 cell division cycle and apoptosis regulator protein 1 pseudogene NW_004955434 8711959 8714535 + 102009415 AGCD01032265 MODEL 8844690 pseudo LOC102006077 non-histone chromosomal protein HMG-14 pseudogene NW_004955547 2571567 2571850 - 102006077 AGCD01072283 MODEL 8981215 ncrna LOC102023957 uncharacterized LOC102023957 NW_004955441 10691744 10696801 + 102023957 AGCD01037094;GBDF01160066;XR_001235304;XR_262067 MODEL 8731893 ncrna LOC102025732 uncharacterized LOC102025732 NW_004955443 7748996 7762769 - 102025732 AGCD01038297;GBDF01084541;XR_001235469;XR_001235470;XR_001235471;XR_001235472;XR_001235473;XR_001235474 MODEL 8935611 pseudo LOC102004666 zinc finger and SCAN domain-containing protein 4-like NW_004955405 11735072 11756169 - 102004666 AGCD01004838;AGCD01004839;AGCD01004840;AGCD01004841 MODEL 8748656 protein-coding LOC102029532 amyloid beta A4 precursor protein-binding family B member 1-interacting protein-like NW_004955425 5387205 5499417 - 102029532 AGCD01025343;AGCD01025344;AGCD01025345;AGCD01025346;AGCD01025347;AGCD01025348;AGCD01025349;GBCQ01190892;XM_005385894;XM_005385895 XP_005385951;XP_005385952 MODEL 8876997 protein-coding Spmip1 sperm microtubule inner protein 1 NW_004955479 9667771 9670258 + 102005375 AGCD01056486;GBDK01149250;XM_005402397;XM_013503275 XP_005402454;XP_013358729 MODEL 10161160 ncrna LOC106148134 uncharacterized LOC106148134 NW_004955416 30184628 30185765 - 106148134 AGCD01017681;GBCE01146722;XR_001233299 MODEL 8823102 protein-coding Neil2 nei like DNA glycosylase 2 ENCODES a protein that exhibits microtubule binding (ortholog); ASSOCIATED WITH High Myopia (ortholog); thoracic aortic aneurysm (ortholog); FOUND IN cytoplasm (ortholog); microtubule cytoskeleton (ortholog); mitotic spindle (ortholog) NW_004955403 53037008 53044996 + 102029692 AGCD01003028;GBCE01081006;GBDF01253257;XM_005373825;XM_005373827;XM_013514559 XP_005373882;XP_005373884;XP_013370013 MODEL 10240828 ncrna LOC106147045 uncharacterized LOC106147045 NW_004955513 4626661 4627653 + 106147045 AGCD01066937;GBCB01009614;XR_001231744 MODEL 8757362 pseudo LOC102009081 transcription factor CP2-like protein 1 pseudogene NW_004955503 2232097 2233831 + 102009081 AGCD01064604 MODEL 8761052 protein-coding Tyk2 tyrosine kinase 2 ENCODES a protein that exhibits growth hormone receptor binding (ortholog); non-membrane spanning protein tyrosine kinase activity (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); cell surface receptor signaling pathway via JAK-STAT (ortholog); interleukin-10-mediated signaling pathway (ortholog); PARTICIPATES IN angiotensin II signaling pathway via AT1 receptor; Interleukin-10 signaling pathway; interleukin-12 signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Cocaine-Related Disorders (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955495 1618099 1637996 - 102004082 AGCD01061706;AGCD01061707;AGCD01061708;GBDJ01227777;XM_005405593;XM_013505151;XM_013505152;XM_013505153;XM_013505154;XM_013505155;XM_013505156;XM_013505157;XM_013505158;XM_013505159 XP_005405650;XP_013360605;XP_013360606;XP_013360607;XP_013360608;XP_013360609;XP_013360610;XP_013360611;XP_013360612;XP_013360613 MODEL 10210369 ncrna LOC106150153 uncharacterized LOC106150153 NW_004955466 1789546 1799359 - 106150153 AGCD01050717;GBBH01146369;XR_001236793 MODEL 8863564 pseudo LOC102027142 tripartite motif-containing protein 44 pseudogene NW_004955454 5514927 5515885 - 102027142 AGCD01045175 MODEL 8875785 protein-coding Slc37a2 solute carrier family 37 member 2 ENCODES a protein that exhibits glucose 6-phosphate:phosphate antiporter activity (ortholog); INVOLVED IN glucose-6-phosphate transport (ortholog); phosphate ion transmembrane transport (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955412 26119121 26143728 + 102018483 AGCD01013185;GBCE01075926;XM_005378455;XM_013511237;XM_013511238 XP_005378512;XP_013366691;XP_013366692 MODEL 8782984 ncrna LOC102018646 uncharacterized LOC102018646 NW_004955538 2638259 2653814 + 102018646 AGCD01071133;AGCD01071134;GBDK01170259;XR_001232095 MODEL 8807813 protein-coding Scn8a sodium voltage-gated channel alpha subunit 8 ENCODES a protein that exhibits sodium ion binding (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN action potential (ortholog); adult walking behavior (ortholog); locomotory behavior (ortholog); ASSOCIATED WITH Ataxia (ortholog); autistic disorder (ortholog); benign familial infantile seizures 5 (ortholog); FOUND IN axon (ortholog); axon initial segment (ortholog); cytoplasmic vesicle (ortholog) NW_004955547 2086215 2201300 + 102026263 AGCD01072256;AGCD01072257;AGCD01072258;AGCD01072259;AGCD01072260;GBDF01162571;XM_005411910;XM_005411911;XM_005411914;XM_005411915;XM_005411916;XM_013508490;XR_001232232;XR_001232233 XP_005411967;XP_005411968;XP_005411971;XP_005411972;XP_005411973;XP_013363944 MODEL 8997275 protein-coding Paqr4 progestin and adipoQ receptor family member 4 ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN protein stabilization (ortholog); regulation of ceramide biosynthetic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Neoplasm Recurrence, Local (ortholog); Prostatic Neoplasms (ortholog); FOUND IN Golgi membrane (ortholog) NW_004955442 14373092 14375862 - 102010313 AGCD01037815;GBCE01008164;XM_005391386 XP_005391443 MODEL 8707173 protein-coding LOC102007528 histone H2B type 1 NW_004955465 13392728 13393418 + 102007528 AGCD01050607;XM_005398952 XP_005399009 MODEL 8730256 protein-coding Yipf2 Yip1 domain family member 2 FOUND IN Golgi medial cisterna (ortholog); Golgi trans cisterna (ortholog); late endosome membrane (ortholog) NW_004955495 2001458 2005880 - 102015214 AGCD01061744;GBCB01059650;XM_005405636;XM_013505171;XM_013505172;XM_013505173 XP_005405693;XP_013360625;XP_013360626;XP_013360627 MODEL 8823405 protein-coding LOC102015588 phosphatidylcholine transfer protein-like NW_004955451 6877991 6908273 - 102015588 AGCD01043213;AGCD01043214;AGCD01043215;AGCD01043216;AGCD01043217;AGCD01043218;GBBH01077365;XM_005394076;XM_005394077;XM_005394078;XM_005394079 XP_005394133;XP_005394134;XP_005394135;XP_005394136 MODEL 8738925 pseudo LOC102009416 60S ribosomal protein L13 pseudogene NW_004955435 16416187 16416933 - 102009416 AGCD01033326;XR_261708 MODEL 9035083 pseudo LOC102027784 integrator complex subunit 3 pseudogene NW_004955435 14659232 14660139 - 102027784 AGCD01033246 MODEL 8943754 pseudo LOC102020814 serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit beta pseudogene NW_004955494 2731664 2733244 - 102020814 AGCD01061448 MODEL 8787307 pseudo LOC102024329 cullin-2-like NW_004955471 7469519 7509567 - 102024329 AGCD01053150;AGCD01053151;AGCD01053152;AGCD01053153 MODEL 8729961 pseudo LOC102025408 ferritin light chain pseudogene NW_004955447 14388461 14403890 + 102025408 AGCD01041003;XM_005392866;XM_005392867;XM_005392868;XM_005392869 MODEL 10263814 protein-coding LOC106146761 olfactory receptor 7D4-like NW_004955495 458915 463885 - 106146761 AGCD01061630;XM_013505044 XP_013360498 MODEL 8803046 protein-coding Phox2a paired like homeobox 2A ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN locus ceruleus development (ortholog); midbrain development (ortholog); noradrenergic neuron differentiation (ortholog); ASSOCIATED WITH congenital fibrosis of the extraocular muscles 2 (ortholog); Fibrosis (ortholog); genetic disease (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955414 19141589 19145486 + 102017975 AGCD01015300;AGCD01015301;XM_005380455 XP_005380512 MODEL 8995857 protein-coding Evi2a ecotropic viral integration site 2A FOUND IN plasma membrane (ortholog) NW_004955481 6346024 6350216 - 102016709 AGCD01057024;GBDF01307664;XM_005402795;XM_013503425 XP_005402852;XP_013358879 MODEL 9006727 ncrna LOC102028462 uncharacterized LOC102028462 NW_004955436 5404224 5406790 - 102028462 AGCD01033678;GBCB01034442;XR_001234929 MODEL 8919529 protein-coding Krt80 keratin 80 FOUND IN cytoplasm (ortholog); desmosome (ortholog); intermediate filament (ortholog) NW_004955547 2511235 2531631 - 102005752 AGCD01072283;GBBH01140251;XM_005411932;XM_013508497 XP_005411989;XP_013363951 MODEL 39132934 snorna SNORD73A Small nucleolar RNA SNORD73 8870401 protein-coding Srsf7 serine and arginine rich splicing factor 7 ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); negative regulation of mRNA splicing, via spliceosome (ortholog); RNA splicing (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH clear cell renal cell carcinoma (ortholog); Glomerular Hyperfiltration (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955441 6416709 6423185 - 102011592 AGCD01036918;AGCD01036919;AGCD01036920;GBCC01000687;XM_005390889;XM_005390891;XR_001235300;XR_001235301 XP_005390946;XP_005390948 MODEL 8974999 protein-coding LOC102021567 leucine-rich repeat-containing protein 37A3-like NW_004955423 16045714 16051514 - 102021567 AGCD01023823;GBDF01009647;XM_013514556 XP_013370010 MODEL 8928626 ncrna LOC102009084 uncharacterized LOC102009084 NW_004955427 14231272 14244398 + 102009084 AGCD01027268;GBBH01218259;XR_261275 MODEL 8917388 pseudo LOC102006459 protein lin-7 homolog A-like NW_004955418 22883973 22884992 - 102006459 AGCD01019293 MODEL 8961635 protein-coding LOC102026803 olfactory receptor 6C74-like NW_004955546 2419782 2420720 + 102026803 AGCD01072091;XM_005411824 XP_005411881 MODEL 8819832 protein-coding Leo1 LEO1 component of Paf1/RNA polymerase II complex INVOLVED IN endodermal cell fate commitment (ortholog); mRNA 3'-end processing (ortholog); negative regulation of myeloid cell differentiation (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; RNA polymerase II transcription elongation pathway; ASSOCIATED WITH spermatogenic failure 57 (ortholog); FOUND IN Cdc73/Paf1 complex (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955409 2711475 2727879 + 102022791 AGCD01009215;AGCD01009216;AGCD01009217;GBBH01139969;GBDI01082426;XM_013510286 XP_013365740 MODEL 8729650 protein-coding Tgfbi transforming growth factor beta induced ENCODES a protein that exhibits collagen binding (ortholog); extracellular matrix binding (ortholog); identical protein binding (ortholog); INVOLVED IN angiogenesis (ortholog); cell adhesion (ortholog); chondrocyte differentiation (ortholog); ASSOCIATED WITH corneal dystrophy (ortholog); Diabetic Nephropathies (ortholog); epithelial basement membrane dystrophy (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955408 31093450 31124715 + 102014537 AGCD01008821;GBBH01034064;XM_005376495 XP_005376552 MODEL 10281941 ncrna LOC106146499 uncharacterized LOC106146499 NW_004955482 5417570 5422557 - 106146499 AGCD01057328;AGCD01057329;GBCB01055436;XR_001230955 MODEL 9018313 protein-coding Borcs6 BLOC-1 related complex subunit 6 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN lysosome localization (ortholog); ASSOCIATED WITH Fraser syndrome 3 (ortholog); FOUND IN BORC complex (ortholog) NW_004955467 8766322 8769169 + 102022801 AGCD01051471;GBBH01198077;XM_005399428 XP_005399485 MODEL 8898874 ncrna LOC102003310 uncharacterized LOC102003310 NW_004955453 2086507 2095184 - 102003310 AGCD01044622;GBDF01223525;XR_001236135;XR_001236136;XR_001236137 MODEL 8936058 protein-coding LOC102023959 olfactory receptor 11G2-like NW_004955550 721097 722059 + 102023959 AGCD01072516;XM_005412137 XP_005412194 MODEL 8769222 protein-coding Pla1a phospholipase A1 member A ENCODES a protein that exhibits glycerophospholipid phospholipase A1 activity (ortholog); phosphatidylserine lysophospholipase A1 activity (ortholog); FOUND IN acrosomal membrane (ortholog); extracellular region (ortholog) NW_004955427 19298004 19334454 + 102020033 AGCD01027365;GBDJ01230379;XM_005386450;XM_005386451 XP_005386507;XP_005386508 MODEL 8745526 ncrna LOC102010234 uncharacterized LOC102010234 NW_004955463 10201295 10205872 - 102010234 AGCD01049806;GBDF01116012;XR_263170 MODEL 9020185 protein-coding Six6 SIX homeobox 6 ENCODES a protein that exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); ASSOCIATED WITH Isolated Microphthalmia with Cataract 2 (ortholog); myopia (ortholog); optic disc anomalies with retinal and/or macular dystrophy (ortholog) NW_004955466 9120227 9122109 - 102020896 AGCD01051028;XM_013521887 XP_013377341 MODEL 10248255 ncrna LOC106148135 uncharacterized LOC106148135 NW_004955416 9072191 9073008 - 106148135 AGCD01017075;AGCD01017076;XR_001233303 MODEL 9057896 protein-coding LOC102009418 uncharacterized LOC102009418 NW_004955528 214625 215535 - 102009418 AGCD01069515;XM_005410049 XP_005410106 MODEL 8702196 ncrna LOC102004673 uncharacterized LOC102004673 NW_004955406 23278454 23287251 - 102004673 AGCD01006169;GBDK01311017;XR_001230927;XR_259505 MODEL 9006042 pseudo LOC102003633 cohesin subunit SA-1 pseudogene NW_004955463 594311 597367 + 102003633 AGCD01049490 MODEL 8866504 protein-coding Tnni1 troponin I1, slow skeletal type INVOLVED IN transition between fast and slow fiber (ortholog); ventricular cardiac muscle tissue morphogenesis (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; FOUND IN troponin complex (ortholog) NW_004955406 37535397 37554868 - 102015690 AGCD01006576;GBCB01024722;XM_013522223;XM_013522227 XP_013377677;XP_013377681 MODEL 8752967 pseudo LOC102012190 heat shock factor-binding protein 1 pseudogene NW_004955415 16038711 16039206 + 102012190 AGCD01016366;XM_005380832 MODEL 8981947 protein-coding LOC102020816 protein FAM161A NW_004955424 22125868 22142713 + 102020816 AGCD01024933;GBDF01050425;XM_005385735;XM_005385737 XP_005385792;XP_005385794 MODEL 8760134 protein-coding LOC102024330 mas-related G-protein coupled receptor member X3-like NW_004955414 33545068 33545694 - 102024330 AGCD01015810;XM_013511746 XP_013367200 MODEL 10256852 ncrna LOC106149334 uncharacterized LOC106149334 NW_004955402 6906641 6916277 - 106149334 AGCD01000162;XR_001235454;XR_001235468 MODEL 8713719 protein-coding LOC102027143 uncharacterized LOC102027143 NW_004955455 4911109 4927967 - 102027143 AGCD01045705;AGCD01045706;AGCD01045707;GBDF01157410;XM_013520308 XP_013375762 MODEL 8807997 pseudo LOC102006081 26S protease regulatory subunit 4 pseudogene NW_004955444 10175071 10176371 - 102006081 AGCD01039007;XR_262256 MODEL 8980382 protein-coding Igsf22 immunoglobulin superfamily member 22 NW_004955414 33364637 33378363 - 102023687 AGCD01015805;GBDF01144543;XM_013511745 XP_013367199 MODEL 8867423 pseudo LOC102019782 heterogeneous nuclear ribonucleoprotein A3 pseudogene NW_004955462 2855640 2858078 - 102019782 AGCD01049188 MODEL 8885648 ncrna LOC102012639 uncharacterized LOC102012639 NW_004955415 32915416 32918889 - 102012639 AGCD01016740;GBBH01160712;XR_260334 MODEL 8981117 protein-coding Slc37a3 solute carrier family 37 member 3 ENCODES a protein that exhibits glucose 6-phosphate:phosphate antiporter activity (ortholog); xenobiotic transmembrane transporter activity (ortholog); INVOLVED IN glucose-6-phosphate transport (ortholog); phosphate ion transmembrane transport (ortholog); xenobiotic transmembrane transport (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); lysosomal membrane (ortholog) NW_004955494 2891415 2933067 + 102022095 AGCD01061455;GBDK01189500;XM_005405423;XM_013504991;XM_013504992 XP_005405480;XP_013360445;XP_013360446 MODEL 8784699 protein-coding LOC102025736 immunoglobulin alpha Fc receptor-like NW_004955567 1332508 1352281 - 102025736 AGCD01074467;AGCD01074468;GBDI01357866;XM_013509281;XM_013509282;XM_013509283 XP_013364735;XP_013364736;XP_013364737 MODEL 8801140 pseudo LOC102007529 pre-mRNA-splicing factor CWC22 homolog NW_004955465 13700490 13703481 - 102007529 AGCD01050618;AGCD01050619 MODEL 9026762 pseudo LOC102029533 high mobility group protein B1 pseudogene NW_004955500 8025847 8035032 + 102029533 AGCD01063971;XR_264247 MODEL 10206393 ncrna LOC106146616 uncharacterized LOC106146616 NW_004955486 1930795 1936730 + 106146616 AGCD01058974;AGCD01058975;GBDF01281263;XR_001231144 MODEL 8771442 pseudo LOC102015595 probable dimethyladenosine transferase pseudogene NW_004955404 2498803 2503708 + 102015595 AGCD01003259 MODEL 8893851 protein-coding Neil3 nei like DNA glycosylase 3 ENCODES a protein that exhibits bubble DNA binding (ortholog); class I DNA-(apurinic or apyrimidinic site) endonuclease activity (ortholog); DNA N-glycosylase activity (ortholog); INVOLVED IN base-excision repair (ortholog); single strand break repair (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955403 30549779 30591757 - 102015268 AGCD01002399;GBDF01110451;XM_005373513;XM_013515218 XP_005373570;XP_013370672 MODEL 8845871 protein-coding Spmip10 sperm microtubule inner protein 10 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN axonemal B tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955521 4444948 4448702 + 102019630 AGCD01068262;GBDF01004269;XM_005409330 XP_005409387 MODEL 9047503 protein-coding Pomgnt2 protein O-linked mannose N-acetylglucosaminyltransferase 2 (beta 1,4-) ENCODES a protein that exhibits acetylglucosaminyltransferase activity (ortholog); protein O-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN neuron migration (ortholog); protein O-linked glycosylation (ortholog); protein O-linked glycosylation via mannose (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A8 (ortholog); exotropia (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955420 27884262 27899293 + 102014572 AGCD01021462;GBCB01098321;XM_005383498;XM_005383499;XM_005383501;XM_013513533;XM_013513534;XR_001233753;XR_001233754;XR_001233755;XR_001233756;XR_001233757;XR_001233758;XR_001233759 XP_005383555;XP_005383556;XP_005383558;XP_013368987;XP_013368988 MODEL 8881396 protein-coding Tspan17 tetraspanin 17 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN establishment of protein localization to organelle (ortholog); protein maturation (ortholog); regulation of membrane protein ectodomain proteolysis (ortholog) NW_004955408 28914392 28924352 + 102016239 AGCD01008734;GBCQ01039281;XM_005376397;XM_013509645;XM_013509648;XM_013509649 XP_005376454;XP_013365099;XP_013365102;XP_013365103 MODEL 9017508 protein-coding Tymp thymidine phosphorylase ENCODES a protein that exhibits protein homodimerization activity (ortholog); thymidine phosphorylase activity (ortholog); INVOLVED IN dTMP catabolic process (ortholog); pyrimidine nucleoside metabolic process (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; capecitabine pharmacodynamics pathway; capecitabine pharmacokinetics pathway; ASSOCIATED WITH 2-aminoadipic 2-oxoadipic aciduria (ortholog); Breast Neoplasms (ortholog); carcinoma (ortholog) NW_004955413 33505424 33509095 - 102005582 AGCD01014673;GBDJ01072364;XM_013511510;XM_013511511 XP_013366964;XP_013366965 MODEL 9033228 protein-coding Evi2b ecotropic viral integration site 2B INVOLVED IN positive regulation of granulocyte differentiation (ortholog) NW_004955481 6332220 6342374 - 102017236 AGCD01057024;GBDK01241136;XM_005402796 XP_005402853 MODEL 8791327 protein-coding LOC102018647 uncharacterized LOC102018647 NW_004955538 3457041 3463322 - 102018647 AGCD01071164;GBDI01201463;XM_013507825 XP_013363279 MODEL 9010766 protein-coding LOC102030247 zinc finger protein 665 NW_004955558 24920 35896 - 102030247 AGCD01073338;GBDK01126549;XM_005412652;XM_005412658;XM_013508863 XP_005412709;XP_005412715;XP_013364317 MODEL 10359863 ncrna LOC106147332 uncharacterized LOC106147332 NW_004955544 2118005 2299712 + 106147332 AGCD01071732;AGCD01071733;AGCD01071734;AGCD01071735;XR_001232176 MODEL 8762500 protein-coding LOC102026806 vomeronasal type-1 receptor 4-like NW_004955558 275402 276472 + 102026806 AGCD01073361;XM_005412730 XP_005412787 MODEL 9028822 protein-coding Scn9a sodium voltage-gated channel alpha subunit 9 ENCODES a protein that exhibits voltage-gated sodium channel activity (ortholog); INVOLVED IN action potential propagation (ortholog); behavioral response to formalin induced pain (ortholog); behavioral response to pain (ortholog); ASSOCIATED WITH autosomal recessive congenital indifference to pain (ortholog); Charcot-Marie-Tooth disease dominant intermediate B (ortholog); Chronic Pain (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); node of Ranvier (ortholog) NW_004955449 7858156 8017569 + 102010648 AGCD01042004;AGCD01042005;AGCD01042006;AGCD01042007;GBBH01096669;XM_005393289 XP_005393346 MODEL 8875561 protein-coding Yipf3 Yip1 domain family member 3 ASSOCIATED WITH renal cell carcinoma (ortholog); FOUND IN Golgi apparatus (ortholog); transport vesicle (ortholog) NW_004955437 9342030 9346315 - 102010835 AGCD01034527;GBCE01029764;XM_005389778 XP_005389835 MODEL 8827360 ncrna LOC102018234 uncharacterized LOC102018234 NW_004955443 19101620 19119702 - 102018234 AGCD01038619;GBDF01262552;XR_262213 MODEL 8850435 ncrna LOC102027789 uncharacterized LOC102027789 NW_004955438 20658927 20661290 - 102027789 AGCD01035519;GBDF01289019;XR_261954 MODEL 8769037 protein-coding Tgfbr1 transforming growth factor beta receptor 1 ENCODES a protein that exhibits ATP binding (ortholog); growth factor binding (ortholog); I-SMAD binding (ortholog); INVOLVED IN angiogenesis (ortholog); angiogenesis involved in coronary vascular morphogenesis (ortholog); animal organ regeneration (ortholog); PARTICIPATES IN altered transforming growth factor-beta Smad dependent signaling pathway; colorectal cancer pathway; glypican signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Animal Disease Models (ortholog); aortic aneurysm (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); bicellular tight junction (ortholog) NW_004955419 26490899 26546349 - 102016055 AGCD01020410;AGCD01020411;AGCD01020412;AGCD01020413;GBDF01223975;XM_005382822;XM_005382823;XM_013513285 XP_005382879;XP_005382880;XP_013368739 MODEL 10255167 protein-coding LOC106147046 cuticle collagen 40-like NW_004955513 4148400 4149677 + 106147046 AGCD01066922;GBCE01085018;XM_013506702 XP_013362156 MODEL 9005211 protein-coding LOC102003313 chromosome unknown open reading frame, human C1orf21 ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955406 23126976 23257616 + 102003313 AGCD01006165;AGCD01006166;AGCD01006167;AGCD01006168;GBCQ01126238;XM_005375052;XM_005375054;XM_013521592 XP_005375109;XP_005375111;XP_013377046 MODEL 9064095 pseudo LOC102025737 cyclin-G1 pseudogene NW_004955445 7463863 7464891 - 102025737 AGCD01039542 MODEL 8816765 protein-coding Ska1 spindle and kinetochore associated complex subunit 1 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); establishment of meiotic spindle orientation (ortholog); metaphase chromosome alignment (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hepatocellular carcinoma (ortholog); FOUND IN centrosome (ortholog); kinetochore (ortholog); meiotic spindle (ortholog) NW_004955402 35382531 35395787 + 102018668 AGCD01000884;GBDF01306695;XM_005372927;XM_005372928 XP_005372984;XP_005372985 MODEL 8774894 protein-coding Phox2b paired like homeobox 2B ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN autonomic nervous system development (ortholog); brainstem development (ortholog); cell development (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); congenital central hypoventilation syndrome (ortholog); Congenital Central Hypoventilation Syndrome 1 (ortholog); FOUND IN chromatin (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955443 5935975 5938747 + 102029129 AGCD01038244;AGCD01038245;XM_013518031 XP_013373485 MODEL 8777398 ncrna LOC102004680 uncharacterized LOC102004680 NW_004955461 2769426 3001729 + 102004680 AGCD01048841;AGCD01048842;AGCD01048843;AGCD01048844;AGCD01048845;GBCE01007435;XR_001236575;XR_001236576;XR_001236577;XR_001236578;XR_001236579;XR_001236580;XR_263075 MODEL 8965719 pseudo LOC102028466 ataxin-3 pseudogene NW_004955437 3492679 3496031 - 102028466 AGCD01034321 MODEL 39132935 snorna SNORD73B Small nucleolar RNA SNORD73 8734127 protein-coding Krt82 keratin 82 ENCODES a protein that exhibits structural molecule activity (ortholog); FOUND IN cytoplasm (ortholog); keratin filament (ortholog) NW_004955547 2744554 2755794 - 102009109 AGCD01072294;GBDJ01171921;XM_005411941 XP_005411998 MODEL 8874034 ncrna LOC102024333 uncharacterized LOC102024333 NW_004955417 10478200 10486529 + 102024333 AGCD01018071;GBDK01414540;XR_001233463;XR_001233464 MODEL 8790510 protein-coding Srsf9 serine and arginine rich splicing factor 9 ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN negative regulation of mRNA splicing, via spliceosome (ortholog); response to alkaloid (ortholog); response to toxic substance (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Experimental Autoimmune Encephalomyelitis (ortholog); human immunodeficiency virus infectious disease (ortholog); urinary bladder cancer (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955455 11175760 11183597 + 102010549 AGCD01045985;AGCD01045986;GBDF01090183;XM_005396505 XP_005396562 MODEL 8783453 pseudo LOC102006463 targeting protein for Xklp2 pseudogene NW_004955484 7904220 7935632 - 102006463 AGCD01058355;AGCD01058356;AGCD01058357;AGCD01058358;AGCD01058359 MODEL 9016915 protein-coding Lep leptin ENCODES a protein that exhibits DNA binding (ortholog); hormone activity (ortholog); leptin receptor binding (ortholog); INVOLVED IN activation of protein kinase C activity (ortholog); adipose tissue development (ortholog); adult feeding behavior (ortholog); PARTICIPATES IN altered energy homeostasis pathway; altered leptin system pathway; energy homeostasis pathway; ASSOCIATED WITH abdominal obesity-metabolic syndrome (ortholog); abdominal obesity-metabolic syndrome 1 (ortholog); acute pancreatitis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955479 9266604 9276568 + 102025002 AGCD01056457;GBCB01004075;XM_005402367 XP_005402424 MODEL 10101736 ncrna LOC106146500 uncharacterized LOC106146500 NW_004955482 5425793 5426888 - 106146500 AGCD01057330;GBCB01052957;XR_001230956 MODEL 8905476 protein-coding Igsf3 immunoglobulin superfamily member 3 INVOLVED IN axonogenesis (ortholog); cell differentiation (ortholog); cell morphogenesis (ortholog); ASSOCIATED WITH esophageal atresia (ortholog); lacrimal duct obstruction (ortholog); Lacrimal Puncta Agenesis (ortholog) NW_004955435 19703952 19796065 - 102003688 AGCD01033436;AGCD01033437;GBCE01077748;GBDJ01317924;XM_005389042 XP_005389099 MODEL 8709873 protein-coding Borcs7 BLOC-1 related complex subunit 7 INVOLVED IN axon development (ortholog); lysosome localization (ortholog); motor behavior (ortholog); ASSOCIATED WITH hereditary spastic paraplegia (ortholog); neuroaxonal dystrophy (ortholog); schizophrenia (ortholog); FOUND IN BORC complex (ortholog); lysosome (ortholog) NW_004955485 7605277 7615924 - 102010267 AGCD01058665;GBCB01024707;XM_005403820 XP_005403877 MODEL 9021029 protein-coding LOC102025409 general transcription factor IIH subunit 2 NW_004955575 216880 249692 + 102025409 AGCD01075208;AGCD01075209;AGCD01075210;GBDK01276729;XM_005413918;XM_005413919 XP_005413975;XP_005413976 MODEL 8912290 protein-coding LOC102023961 beta-microseminoprotein-like NW_004955556 282204 297278 + 102023961 AGCD01073170;GBDF01208784;XM_005412550;XM_005412551 XP_005412607;XP_005412608 MODEL 8730509 pseudo LOC102026809 E3 ubiquitin-protein ligase RNF13 pseudogene NW_004955443 391548 393855 - 102026809 AGCD01038105 MODEL 9050458 protein-coding LOC102010235 cytochrome P450 4X1 ENCODES a protein that exhibits anandamide 14,15 epoxidase activity (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog) NW_004955464 11373217 11415433 - 102010235 AGCD01050149;AGCD01050150;AGCD01050151;AGCD01050152;AGCD01050153;GBDI01243736;XM_013521750;XM_013521751;XM_013521752;XR_001236710 XP_013377204;XP_013377205;XP_013377206 MODEL 9060830 protein-coding Pla2g10 phospholipase A2 group X ENCODES a protein that exhibits 1-alkyl-2-acetylglycerophosphocholine esterase activity (ortholog); A2-type glycerophospholipase activity (ortholog); glycerophospholipase activity (ortholog); INVOLVED IN axon guidance (ortholog); cellular response to leukemia inhibitory factor (ortholog); cholesterol homeostasis (ortholog); FOUND IN acrosomal vesicle (ortholog); extracellular region (ortholog) NW_004955442 4208497 4225893 + 102015776 AGCD01037522;AGCD01037523;AGCD01037524;GBCE01002387;XM_005391132 XP_005391189 MODEL 8960409 pseudo LOC102007532 60S ribosomal protein L6 pseudogene NW_004955412 12501193 12501804 - 102007532 AGCD01012820 MODEL 10314534 ncrna LOC106148136 uncharacterized LOC106148136 NW_004955416 9021286 9027036 - 106148136 AGCD01017072;XR_001233304 MODEL 8707675 ncrna LOC102003635 uncharacterized LOC102003635 NW_004955412 994166 1000278 + 102003635 AGCD01012505;GBDF01113084;XR_259960 MODEL 39131362 protein-coding SPMIP11 sperm microtubule inner protein 11 8981116 pseudo LOC102021570 60S acidic ribosomal protein P0 pseudogene NW_004955423 3215518 3216685 - 102021570 AGCD01023509 MODEL 8921459 ncrna LOC102020819 uncharacterized LOC102020819 NW_004955501 3904899 3906820 + 102020819 AGCD01064106;GBDF01122276;XR_264252 MODEL 8766281 pseudo LOC102009085 beclin 1-associated autophagy-related key regulator pseudogene NW_004955427 20646973 20652239 + 102009085 AGCD01027412 MODEL 8890717 protein-coding Paqr5 progestin and adipoQ receptor family member 5 NW_004955450 7089521 7108981 - 102016333 AGCD01042532;GBDF01048968;XM_005393661;XM_005393662;XM_013519041 XP_005393718;XP_005393719;XP_013374495 MODEL 10078145 ncrna LOC106149335 uncharacterized LOC106149335 NW_004955443 4584569 4615678 + 106149335 AGCD01038218;GBCQ01178352;XR_001235452 MODEL 9012978 pseudo LOC102027149 LYR motif-containing protein 2 pseudogene NW_004955457 8137763 8138031 + 102027149 AGCD01046903 MODEL 8785571 pseudo LOC102004682 U1 small nuclear ribonucleoprotein C pseudogene NW_004955411 31410189 31410670 - 102004682 AGCD01012272 MODEL 8903700 pseudo LOC102028467 mortality factor 4-like protein 1 pseudogene NW_004955533 3541883 3543014 + 102028467 AGCD01070422;XR_264751 MODEL 8757432 protein-coding LOC102012640 cystatin-SA NW_004955415 30607068 30613196 - 102012640 AGCD01016666;XM_005381141 XP_005381198 MODEL 8955614 pseudo LOC102030249 estrogen-related receptor gamma-like NW_004955562 1917168 1977068 - 102030249 AGCD01074004;AGCD01074005;AGCD01074006;AGCD01074007;AGCD01074008 MODEL 10097584 pseudo LOC106146762 olfactory receptor 7D4-like NW_004955495 479120 483369 + 106146762 AGCD01061630 MODEL 8942682 protein-coding Evi5 ecotropic viral integration site 5 ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN positive regulation of GTPase activity (ortholog); regulation of cilium assembly (ortholog); retrograde transport, endosome to Golgi (ortholog); FOUND IN cytosol (ortholog) NW_004955423 1784255 1997561 + 102021566 AGCD01023455;AGCD01023456;AGCD01023457;AGCD01023458;AGCD01023459;AGCD01023460;AGCD01023461;GBDI01158274;XM_005385043;XM_005385044;XM_013514416;XM_013514417;XM_013514418;XM_013514419;XM_013514420;XM_013514421;XM_013514422 XP_005385100;XP_005385101;XP_013369870;XP_013369871;XP_013369872;XP_013369873;XP_013369874;XP_013369875;XP_013369876 MODEL 8968474 protein-coding Scnm1 sodium channel modifier 1 ENCODES a protein that exhibits enzyme binding (ortholog); FOUND IN nuclear speck (ortholog); spliceosomal complex (ortholog); U12-type catalytic step 2 spliceosome (ortholog) NW_004955588 526986 529774 + 102024628 AGCD01076115;GBDF01047456;XM_005414493 XP_005414550 MODEL 8731635 pseudo LOC102018237 high mobility group protein B1-like NW_004955445 10890882 10892048 - 102018237 AGCD01039680 MODEL 8951540 pseudo LOC102015596 60S acidic ribosomal protein P1 pseudogene NW_004955452 7589803 7590997 - 102015596 AGCD01044174;XM_005394950 MODEL 8972400 protein-coding LOC102012646 uncharacterized LOC102012646 NW_004955416 14157382 14202260 + 102012646 AGCD01017243;AGCD01017244;AGCD01017245;AGCD01017246;GBCQ01192362;XM_013512420 XP_013367874 MODEL 8858681 pseudo LOC102012193 proteasome subunit alpha type-6 pseudogene NW_004955416 8425977 8426698 - 102012193 AGCD01017052 MODEL 8843633 protein-coding LOC102029536 cytochrome c oxidase subunit 7A2, mitochondrial FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955502 3753029 3759663 - 102029536 AGCD01064320;AGCD01064321;GBDK01017871;XM_013505844 XP_013361298 MODEL 8999128 pseudo LOC102025410 nucleoporin p54-like NW_004955447 17601112 17610634 - 102025410 AGCD01041131;AGCD01041132 MODEL 10289125 protein-coding Tspan18 tetraspanin 18 ENCODES a protein that exhibits transmembrane transporter binding (ortholog); INVOLVED IN calcium-ion regulated exocytosis (ortholog); calcium-mediated signaling (ortholog); hemostasis (ortholog); ASSOCIATED WITH schizophrenia (ortholog); FOUND IN cell periphery (ortholog) NW_004955422 2833124 2871460 - 106146238 AGCD01022495;XM_013514197;XM_013514198 XP_013369651;XP_013369652 MODEL 10379256 ncrna LOC106148137 uncharacterized LOC106148137 NW_004955416 23651499 23656678 - 106148137 AGCD01017549;XR_001233305 MODEL 8836713 pseudo LOC102006086 diphosphoinositol polyphosphate phosphohydrolase 2 pseudogene NW_004955594 540020 541200 + 102006086 AGCD01076434 MODEL 8943035 ncrna LOC102019786 uncharacterized LOC102019786 NW_004955464 11956438 11958338 + 102019786 AGCD01050169;GBCE01074317;XR_001236679 MODEL 39132861 snorna SNORD79 Small nucleolar RNA SNORD79 8785323 protein-coding Slc37a4 solute carrier family 37 member 4 ENCODES a protein that exhibits glucose 6-phosphate:phosphate antiporter activity (ortholog); glucose-6-phosphate transmembrane transporter activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); gluconeogenesis (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN electron transport chain pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH congenital disorder of glycosylation (ortholog); congenital disorder of glycosylation type IIw (ortholog); Experimental Diabetes Mellitus (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955412 20133652 20140134 - 102022899 AGCD01012994;GBCQ01000749;XM_005378292;XM_013511130;XM_013511131;XM_013511132;XM_013511133;XM_013511134;XM_013511135 XP_005378349;XP_013366584;XP_013366585;XP_013366586;XP_013366587;XP_013366588;XP_013366589 MODEL 8905022 pseudo LOC102009420 proteasome assembly chaperone 2 pseudogene NW_004955536 716838 717352 + 102009420 AGCD01070737 MODEL 8906784 protein-coding Srxn1 sulfiredoxin 1 ENCODES a protein that exhibits oxidoreductase activity, acting on a sulfur group of donors (ortholog); sulfiredoxin activity (ortholog); INVOLVED IN response to oxidative stress (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955597 483358 487555 - 102026821 AGCD01076557;GBCQ01038168;GBDI01255809;XM_013510033 XP_013365487 MODEL 10138621 protein-coding LOC106147047 mediator of RNA polymerase II transcription subunit 27-like NW_004955513 1398627 1414156 - 106147047 AGCD01066856;GBDI01187846;XM_013506711 XP_013362165 MODEL 10140531 protein-coding Tnni2 troponin I2, fast skeletal type ENCODES a protein that exhibits actin binding (ortholog); troponin T binding (ortholog); INVOLVED IN positive regulation of DNA-templated transcription (ortholog); relaxation of skeletal muscle (ortholog); skeletal muscle contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); distal arthrogryposis (ortholog); distal arthrogryposis type 2B (ortholog); FOUND IN nucleus (ortholog); troponin complex (ortholog) NW_004955422 13649827 13652342 + 106146249 AGCD01022837;GBDI01010093;XM_005384181 XP_005384238 MODEL 8890071 protein-coding Tgfbr2 transforming growth factor beta receptor 2 ENCODES a protein that exhibits glycosaminoglycan binding (ortholog); kinase activator activity (ortholog); mitogen-activated protein kinase kinase kinase binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); animal organ regeneration (ortholog); aorta morphogenesis (ortholog); PARTICIPATES IN altered transforming growth factor-beta Smad dependent signaling pathway; colorectal cancer pathway; glypican signaling pathway; ASSOCIATED WITH aortic aneurysm (ortholog); arteriosclerosis (ortholog); bone disease (ortholog); FOUND IN caveola (ortholog); cell surface (ortholog); external side of plasma membrane (ortholog) NW_004955430 21919338 21999688 + 102022415 AGCD01029780;AGCD01029781;GBDI01069771;XM_005387519 XP_005387576 MODEL 8919476 pseudo LOC102003314 40S ribosomal protein S17 pseudogene NW_004955406 36161717 36162486 - 102003314 AGCD01006543 MODEL 9010633 pseudo LOC102023962 ubiquitin-conjugating enzyme E2 C pseudogene NW_004955443 7609576 7669059 + 102023962 AGCD01038289;AGCD01038290;AGCD01038291;AGCD01038292;AGCD01038293 MODEL 8823022 protein-coding LOC102025739 mitochondrial inner membrane protein COX18 ENCODES a protein that exhibits membrane insertase activity (ortholog); INVOLVED IN mitochondrial respiratory chain complex IV assembly (ortholog); protein insertion into mitochondrial inner membrane from matrix (ortholog); protein insertion into mitochondrial membrane (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease, axonal, type 2MM (ortholog); mitochondrial complex IV deficiency nuclear type 1 (ortholog); mitochondrial complex IV deficiency nuclear type 25 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955447 382631 390399 + 102025739 AGCD01040450;AGCD01040451;GBDF01050244;XM_005392942 XP_005392999 MODEL 8918055 protein-coding Borcs8 BLOC-1 related complex subunit 8 INVOLVED IN heart development (ortholog); ASSOCIATED WITH NEURODEGENERATION, INFANTILE-ONSET, WITH OPTIC ATROPHY AND BRAIN ABNORMALITIES (ortholog); FOUND IN BORC complex (ortholog) NW_004955524 2641907 2646275 + 102008656 AGCD01068827;GBDF01046628;XM_005409618;XM_005409619;XM_013507215 XP_005409675;XP_005409676;XP_013362669 MODEL 10317829 protein-coding Ska2 spindle and kinetochore associated complex subunit 2 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); establishment of meiotic spindle orientation (ortholog); mitotic metaphase chromosome alignment (ortholog); FOUND IN kinetochore (ortholog); meiotic spindle (ortholog); outer kinetochore (ortholog) NW_004955451 3839978 3862200 + 106149657 AGCD01043075;AGCD01043076;AGCD01043077;GBDF01087363;XM_013519227 XP_013374681 MODEL 9043028 ncrna LOC102007536 uncharacterized LOC102007536 NW_004955468 11575980 11579208 - 102007536 AGCD01052135;GBDF01249875;XR_263412;XR_263413 MODEL 8964435 protein-coding Pla2g12a phospholipase A2 group XIIA ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955496 557379 568100 + 102025924 AGCD01062235;GBDK01017467;XM_005406188 XP_005406245 MODEL 8745669 pseudo LOC102018653 uncharacterized protein C1orf131 homolog pseudogene NW_004955551 792384 801724 - 102018653 AGCD01072674;AGCD01072675 MODEL 8913195 ncrna LOC102003638 uncharacterized LOC102003638 NW_004955466 11978002 12017214 - 102003638 AGCD01051106;AGCD01051107;GBDI01272836;XR_001236797;XR_001236798;XR_001236799;XR_001236800;XR_001236801;XR_263316;XR_263317 MODEL 8868197 protein-coding Tyms thymidylate synthetase ENCODES a protein that exhibits folic acid binding (ortholog); heterocyclic compound binding (ortholog); mRNA binding (ortholog); INVOLVED IN 'de novo' pyrimidine nucleobase biosynthetic process (ortholog); cartilage development (ortholog); circadian rhythm (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; capecitabine pharmacodynamics pathway; capecitabine pharmacokinetics pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); acute lymphoblastic leukemia (ortholog); acute myeloid leukemia (ortholog); FOUND IN cytoplasm (ortholog); mitochondrial inner membrane (ortholog); mitochondrial matrix (ortholog) NW_004955402 9295862 9304952 - 102022652 AGCD01000212;GBDF01043219;GBDJ01114306;XM_013519582 XP_013375036 MODEL 10126347 ncrna LOC106150154 uncharacterized LOC106150154 NW_004955466 2283413 2331976 + 106150154 AGCD01050733;XR_001236794 MODEL 9019626 ncrna LOC102025413 uncharacterized LOC102025413 NW_004955402 2688645 2701921 - 102025413 AGCD01000087;AGCD01000088;GBDI01267893;XR_001234588 MODEL 9006201 ncrna LOC102009086 uncharacterized LOC102009086 NW_004955428 14583845 14601030 - 102009086 AGCD01027989;AGCD01027990;GBCB01109528;XR_261303 MODEL 8921552 protein-coding LOC102024667 mas-related G-protein coupled receptor member X1-like NW_004955414 33585900 33586814 - 102024667 AGCD01015813;XM_005380536 XP_005380593 MODEL 8708063 protein-coding Paqr6 progestin and adipoQ receptor family member 6 NW_004955545 2382214 2386406 - 102023397 AGCD01071898;GBDJ01188717;XM_005411662;XM_013508270;XM_013508271;XM_013508272;XM_013508273 XP_005411719;XP_013363724;XP_013363725;XP_013363726;XP_013363727 MODEL 10189773 ncrna LOC106146617 uncharacterized LOC106146617 NW_004955486 4747908 4751990 - 106146617 AGCD01059067;XR_001231145 MODEL 10148083 ncrna LOC106146501 uncharacterized LOC106146501 NW_004955482 5504481 5506923 - 106146501 AGCD01057340;GBBH01148057;XR_001230958 MODEL 8776986 protein-coding Yipf4 Yip1 domain family member 4 FOUND IN endoplasmic reticulum (ortholog); Golgi apparatus (ortholog) NW_004955441 622401 655035 + 102009322 AGCD01036718;AGCD01036719;AGCD01036720;AGCD01036721;GBCB01040630;GBCE01055763;XM_013517616 XP_013373070 MODEL 8857312 pseudo LOC102028471 E3 ubiquitin-protein ligase RING2 pseudogene NW_004955546 2784511 2785371 - 102028471 AGCD01072101 MODEL 8855100 protein-coding Nek1 NIMA related kinase 1 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); kinase activity (ortholog); protein kinase activity (ortholog); INVOLVED IN cilium assembly (ortholog); DNA damage response (ortholog); kidney development (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 24 (ortholog); asphyxiating thoracic dystrophy (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955403 36710248 36878901 + 102005546 AGCD01002546;AGCD01002547;AGCD01002548;AGCD01002549;GBDF01162306;GBDF01162307;XM_013513368 XP_013368822 MODEL 8947018 protein-coding Pomk protein O-mannose kinase ENCODES a protein that exhibits carbohydrate kinase activity (ortholog); phosphotransferase activity, alcohol group as acceptor (ortholog); INVOLVED IN brain development (ortholog); carbohydrate phosphorylation (ortholog); learning or memory (ortholog); ASSOCIATED WITH congenital muscular dystrophy-dystroglycanopathy type A12 (ortholog); genetic disease (ortholog); hydrocephalus (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955457 13299176 13318535 + 102014324 AGCD01047040;AGCD01047041;GBDF01222484;XM_005397077;XM_005397078;XM_013520674;XM_013520675 XP_005397134;XP_005397135;XP_013376128;XP_013376129 MODEL 9055647 ncrna LOC102010236 uncharacterized LOC102010236 NW_004955465 1021083 1041695 - 102010236 AGCD01050329;GBDF01287130;XR_263230 MODEL 8971099 protein-coding Evi5l ecotropic viral integration site 5 like ENCODES a protein that exhibits GTPase activator activity (ortholog); small GTPase binding (ortholog); INVOLVED IN negative regulation of cilium assembly (ortholog); positive regulation of GTPase activity (ortholog) NW_004955563 1384694 1401107 - 102021183 AGCD01074145;AGCD01074146;GBDK01234997;XM_013509169;XM_013509170;XM_013509171;XM_013509172;XM_013509173 XP_013364623;XP_013364624;XP_013364625;XP_013364626;XP_013364627 MODEL 9055736 pseudo LOC102015603 prefoldin subunit 6 pseudogene NW_004955407 23888656 23889043 + 102015603 AGCD01007440 MODEL 10222700 protein-coding LOC106146502 translation initiation factor IF-2-like NW_004955482 7098323 7115117 + 106146502 AGCD01057438;GBDF01042697;XM_013503569 XP_013359023 MODEL 10071268 ncrna LOC106147048 uncharacterized LOC106147048 NW_004955408 30736895 30742706 + 106147048 AGCD01008815;XR_001231754 MODEL 8823100 pseudo LOC102029540 destrin pseudogene NW_004955507 1864240 1864693 + 102029540 AGCD01065573 MODEL 8755150 protein-coding LOC102024336 uncharacterized LOC102024336 NW_004955418 10489837 10598897 + 102024336 AGCD01018979;AGCD01018980;AGCD01018981;AGCD01018982;XM_005382184 XP_005382241 MODEL 8702277 protein-coding Krt84 keratin 84 ENCODES a protein that exhibits structural constituent of skin epidermis (ortholog); INVOLVED IN regulation of keratinocyte differentiation (ortholog); FOUND IN intermediate filament cytoskeleton (ortholog); keratin filament (ortholog) NW_004955547 2729046 2737142 - 102008577 AGCD01072294;XM_005411940;XM_013508447 XP_005411997;XP_013363901 MODEL 10070857 ncrna LOC106148138 uncharacterized LOC106148138 NW_004955416 31288408 31294311 + 106148138 AGCD01017730;XR_001233306 MODEL 8889424 protein-coding LOC102027791 olfactory receptor 13A1-like NW_004955546 2484945 2485577 - 102027791 AGCD01072094;XM_005411825 XP_005411882 MODEL 9017245 pseudo LOC102018657 cryptochrome-1-like NW_004955555 1524678 1525436 - 102018657 AGCD01073085 MODEL 8916945 protein-coding Lepr leptin receptor ENCODES a protein that exhibits identical protein binding (ortholog); leptin receptor activity (ortholog); peptide hormone binding (ortholog); INVOLVED IN angiogenesis (ortholog); bone growth (ortholog); cell surface receptor signaling pathway via STAT (ortholog); PARTICIPATES IN altered energy homeostasis pathway; altered leptin system pathway; energy homeostasis pathway; ASSOCIATED WITH Albuminuria (ortholog); Animal Disease Models (ortholog); arteriosclerosis (ortholog); FOUND IN basolateral plasma membrane (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955423 25108897 25185315 - 102022716 AGCD01024052;AGCD01024053;AGCD01024054;AGCD01024055;AGCD01024056;GBCB01086455;XM_005385299;XM_005385300 XP_005385356;XP_005385357 MODEL 8812521 protein-coding Tspan2 tetraspanin 2 INVOLVED IN astrocyte development (ortholog); axon development (ortholog); inflammatory response (ortholog); ASSOCIATED WITH stroke (ortholog); FOUND IN myelin sheath (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955435 18344320 18371248 - 102003689 AGCD01033403;GBCB01057093;XM_013516547;XM_013516548 XP_013372001;XP_013372002 MODEL 8971374 protein-coding Igsf5 immunoglobulin superfamily member 5 ENCODES a protein that exhibits PDZ domain binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); bicellular tight junction (ortholog); cell surface (ortholog) NW_004955407 38468873 38510040 + 102027815 AGCD01007807;AGCD01007808;GBCQ01017451;XM_005375775;XM_005375776;XM_005375777;XM_005375778 XP_005375832;XP_005375833;XP_005375834;XP_005375835 MODEL 10369612 protein-coding LOC106146763 olfactory receptor 18-like NW_004955495 751332 761811 + 106146763 AGCD01061652;AGCD01061653;XM_013505046 XP_013360500 MODEL 8797193 pseudo LOC102024669 cell division control protein 42 homolog pseudogene NW_004955415 3660284 3665216 - 102024669 AGCD01015949;XR_260341 MODEL 8990178 ncrna LOC102018240 uncharacterized LOC102018240 NW_004955447 18427382 18430221 + 102018240 AGCD01041172;GBDF01114538;XR_262446 MODEL 8746309 protein-coding Scnn1a sodium channel epithelial 1 subunit alpha ENCODES a protein that exhibits actin binding (ortholog); sodium channel activity (ortholog); sodium ion transmembrane transporter activity (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); cellular response to aldosterone (ortholog); intracellular sodium ion homeostasis (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); autism spectrum disorder (ortholog); autosomal recessive pseudohypoaldosteronism type 1 (ortholog); FOUND IN acrosomal vesicle (ortholog); apical plasma membrane (ortholog); ciliary membrane (ortholog) NW_004955413 4000083 4023596 - 102014033 AGCD01013591;AGCD01013592;GBCE01000261;XM_005378765;XM_005378766 XP_005378822;XP_005378823 MODEL 8836844 protein-coding LOC102009424 keratin, type II cytoskeletal 5-like NW_004955547 2759440 2771836 - 102009424 AGCD01072294;XM_005411942 XP_005411999 MODEL 10325919 ncrna LOC106147333 uncharacterized LOC106147333 NW_004955544 2686394 2778086 - 106147333 AGCD01071739;GBCE01106175;XR_001232177 MODEL 8911864 protein-coding Tnni3 troponin I3, cardiac type ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); calcium channel inhibitor activity (ortholog); INVOLVED IN cardiac muscle contraction (ortholog); heart contraction (ortholog); heart development (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2L (ortholog); cardiac amyloidosis (ortholog); FOUND IN cardiac myofibril (ortholog); cardiac Troponin complex (ortholog); contractile muscle fiber (ortholog) NW_004955567 1037325 1042102 + 102004865 AGCD01074455;GBDK01181107;XM_005413355 XP_005413412 MODEL 8862552 protein-coding LOC102020821 collagen alpha-5(VI) chain NW_004955501 7816642 7925709 - 102020821 AGCD01064223;AGCD01064224;AGCD01064225;GBDF01147948;XM_013505730 XP_013361184 MODEL 8783454 pseudo LOC102006467 thyroid transcription factor 1-associated protein 26-like NW_004955488 4546212 4563715 + 102006467 AGCD01059598 MODEL 10229373 ncrna LOC106149336 uncharacterized LOC106149336 NW_004955443 9332823 9336098 + 106149336 AGCD01038349;XR_001235453 MODEL 8745970 protein-coding LOC102030252 zinc finger protein 431-like NW_004955569 713951 757870 + 102030252 AGCD01074611;AGCD01074612;AGCD01074613;AGCD01074614;GBCQ01009390;XM_013509360 XP_013364814 MODEL 8852395 protein-coding LOC102006087 vegetative cell wall protein gp1-like NW_004955450 9118960 9126357 + 102006087 AGCD01042585;GBBH01149209;XM_013518830 XP_013374284 MODEL 8720095 protein-coding Bpgm bisphosphoglycerate mutase ENCODES a protein that exhibits bisphosphoglycerate mutase activity (ortholog); INVOLVED IN cellular response to stress (ortholog); defense response to protozoan (ortholog); erythrocyte development (ortholog); PARTICIPATES IN Fanconi syndrome pathway; fructose-1,6-bisphosphatase deficiency pathway; gluconeogenesis pathway; ASSOCIATED WITH familial erythrocytosis 8 (ortholog) NW_004955494 7867295 7889440 - 102019610 AGCD01061558;GBBH01208829;XM_005405507;XM_005405508;XM_013505024 XP_005405564;XP_005405565;XP_013360478 MODEL 8854497 protein-coding Ska3 spindle and kinetochore associated complex subunit 3 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); establishment of meiotic spindle orientation (ortholog); metaphase chromosome alignment (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN centrosome (ortholog); kinetochore (ortholog); meiotic spindle (ortholog) NW_004955497 1874911 1896588 - 102011217 AGCD01062479;GBBH01161825;GBDF01049973;XM_013505507 XP_013360961 MODEL 10200109 ncrna LOC106150155 uncharacterized LOC106150155 NW_004955466 1727792 1773796 + 106150155 AGCD01050717;GBCB01130127;XR_001236795 MODEL 8786886 protein-coding Tyr tyrosinase ENCODES a protein that exhibits copper ion binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cell population proliferation (ortholog); developmental pigmentation (ortholog); eye pigmentation (ortholog); PARTICIPATES IN alkaptonuria pathway; disulfiram pharmacodynamics pathway; dopamine beta-hydroxylase deficiency pathway; ASSOCIATED WITH Albinism (ortholog); basal cell carcinoma (ortholog); breast cancer (ortholog); FOUND IN cytoplasm (ortholog); melanosome (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955414 4244035 4314001 - 102005248 AGCD01014860;GBDF01275950;XM_005379730 XP_005379787 MODEL 8802516 ncrna LOC102026810 uncharacterized LOC102026810 NW_004955445 7904704 7915720 + 102026810 AGCD01039555;AGCD01039556;GBCB01110711;XR_001235546;XR_001235547;XR_262313 MODEL 8825151 protein-coding Phpt1 phosphohistidine phosphatase 1 ENCODES a protein that exhibits actin filament binding (ortholog); calcium channel inhibitor activity (ortholog); enzyme inhibitor activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); lamellipodium organization (ortholog); negative regulation of T cell receptor signaling pathway (ortholog); PARTICIPATES IN fructose and mannose metabolic pathway; fructosuria pathway; hereditary fructose intolerance syndrome pathway; ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); FOUND IN cytosol (ortholog); leading edge of lamellipodium (ortholog) NW_004955513 4930951 4932509 + 102026562 AGCD01066943;AGCD01066944;GBDJ01218548;XM_005408564 XP_005408621 MODEL 10266440 protein-coding Spmip2 sperm microtubule inner protein 2 NW_004955471 12437203 12537997 - 106150313 AGCD01053292;AGCD01053293;AGCD01053294;AGCD01053295;AGCD01053296;GBDF01127768;XM_013522880 XP_013378334 MODEL 8795529 protein-coding Paqr7 progestin and adipoQ receptor family member 7 NW_004955452 5338224 5342793 - 102010661 AGCD01044018;GBCQ01002034;XM_005394835 XP_005394892 MODEL 8932753 protein-coding Ss18 SS18 subunit of BAF chromatin remodeling complex ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN cell morphogenesis (ortholog); cytoskeleton organization (ortholog); ephrin receptor signaling pathway (ortholog); ASSOCIATED WITH synovial sarcoma (ortholog); FOUND IN microtubule cytoskeleton (ortholog); npBAF complex (ortholog); SWI/SNF complex (ortholog) NW_004955402 14140261 14210467 - 102012593 AGCD01000420;AGCD01000421;GBCB01109031;XM_005372726;XM_005372727;XM_005372728 XP_005372783;XP_005372784;XP_005372785 MODEL 8915716 pseudo LOC102021571 40S ribosomal protein SA-like NW_004955424 12719916 12720914 - 102021571 AGCD01024618 MODEL 8793199 pseudo LOC102013371 40S ribosomal protein S3a pseudogene NW_004955451 12173170 12175229 - 102013371 AGCD01043377 MODEL 8963115 protein-coding LOC102003315 keratin-associated protein 13-1-like NW_004955407 29787812 29788369 + 102003315 AGCD01007615;XM_005375630 XP_005375687 MODEL 8850410 protein-coding Tgfbr3 transforming growth factor beta receptor 3 ENCODES a protein that exhibits activin binding (ortholog); BMP binding (ortholog); coreceptor activity (ortholog); INVOLVED IN animal organ regeneration (ortholog); blastocyst development (ortholog); blood vessel development (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH connective tissue disease (ortholog); COVID-19 (ortholog); endometrial adenocarcinoma (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955423 2573851 2765353 + 102027417 AGCD01023482;AGCD01023483;AGCD01023484;AGCD01023485;GBDK01071854;XM_005385062;XM_005385063 XP_005385119;XP_005385120 MODEL 8729275 protein-coding LOC102023967 keratin-associated protein 10-1-like NW_004955728 17159 18126 + 102023967 AGCD01078208;XM_005415078 XP_005415135 MODEL 8885147 protein-coding LOC102025740 putative olfactory receptor 2W6 NW_004955581 754205 755167 + 102025740 AGCD01075693;XM_005414268 XP_005414325 MODEL 8750241 protein-coding LOC102007537 apolipoprotein L3-like NW_004955413 22864060 22868517 - 102007537 AGCD01014318;XM_013511300 XP_013366754 MODEL 8935551 ncrna LOC102003639 uncharacterized LOC102003639 NW_004955467 6581757 6582473 - 102003639 AGCD01051417;GBDF01227082;XR_263345 MODEL 10176081 protein-coding LOC106147049 translation initiation factor IF-2-like NW_004955513 1951902 1953671 + 106147049 AGCD01066865;GBBH01177166;GBCE01027938;XM_013506718 XP_013362172 MODEL 8731550 protein-coding LOC102015607 olfactory receptor 6C65 NW_004955458 2796704 2797642 + 102015607 AGCD01047244;XM_005397245 XP_005397302 MODEL 8884459 protein-coding LOC102029541 olfactory receptor 8K3-like NW_004955511 1148285 1149247 + 102029541 AGCD01066358;XM_005407953 XP_005408010 MODEL 8837782 protein-coding Pla2g12b phospholipase A2 group XIIB INVOLVED IN cholesterol homeostasis (ortholog); low-density lipoprotein particle remodeling (ortholog); triglyceride homeostasis (ortholog) NW_004955437 18694496 18723311 + 102024846 AGCD01034808;AGCD01034809;AGCD01034810;AGCD01034811;GBCE01066878;XM_005390003;XM_013516765;XM_013516766;XM_013516767 XP_005390060;XP_013372219;XP_013372220;XP_013372221 MODEL 150537134 snorna SNORD8 small nucleolar RNA, C/D box 8 8703607 protein-coding LOC102007969 maestro heat-like repeat-containing protein family member 7 NW_004955406 37107660 37135900 + 102007969 AGCD01006571;GBDF01021853;XM_013522084 XP_013377538 MODEL 10071263 ncrna LOC106146618 uncharacterized LOC106146618 NW_004955486 1497494 1503031 - 106146618 AGCD01058956;XR_001231146 MODEL 8722190 protein-coding LOC102027795 vomeronasal type-1 receptor 4-like NW_004955558 429751 430847 + 102027795 AGCD01073369;XM_005412733 XP_005412790 MODEL 9034354 protein-coding Krt9 keratin 9 INVOLVED IN intermediate filament organization (ortholog); skin development (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH Diffuse Palmoplantar Keratoderma (ortholog); epidermolytic palmoplantar keratoderma (ortholog); epidermolytic palmoplantar keratoderma 1 (ortholog); FOUND IN keratin filament (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955451 15890101 15896282 - 102004664 AGCD01043638;AGCD01043639;GBDJ01039244;XM_005394410 XP_005394467 MODEL 8992053 protein-coding Leprot leptin receptor overlapping transcript ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN negative regulation of growth hormone receptor signaling pathway (ortholog); negative regulation of protein localization to cell surface (ortholog); negative regulation of receptor signaling pathway via JAK-STAT (ortholog); FOUND IN endosome (ortholog); Golgi apparatus (ortholog) NW_004955423 25250873 25265437 - 102023490 AGCD01024060;GBCE01004869;XM_005385301;XM_013514521;XM_013514522 XP_005385358;XP_013369975;XP_013369976 MODEL 8849995 protein-coding Nek10 NIMA related kinase 10 ENCODES a protein that exhibits protein kinase activity (ortholog); INVOLVED IN mucociliary clearance (ortholog); positive regulation of MAP kinase activity (ortholog); positive regulation of protein autophosphorylation (ortholog); ASSOCIATED WITH primary ciliary dyskinesia 44 (ortholog); FOUND IN protein kinase complex (ortholog) NW_004955430 18754292 18988716 - 102016299 AGCD01029701;AGCD01029702;AGCD01029703;AGCD01029704;GBBH01140857;XM_005387500;XM_005387501;XM_005387502;XM_013515617;XM_013515618;XM_013515619;XM_013515620;XM_013515621;XM_013515622;XM_013515623;XM_013515624 XP_005387557;XP_005387558;XP_005387559;XP_013371071;XP_013371072;XP_013371073;XP_013371074;XP_013371075;XP_013371076;XP_013371077;XP_013371078 MODEL 8985655 protein-coding Pomp proteasome maturation protein INVOLVED IN proteasome assembly (ortholog); ASSOCIATED WITH COVID-19 (ortholog); exfoliation syndrome (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (ortholog); nuclear speck (ortholog); nucleus (ortholog) NW_004955497 7978434 7996982 + 102017356 AGCD01062689;AGCD01062690;GBDF01005439;XM_013505497 XP_013360951 MODEL 8877490 protein-coding LOC102024670 ATP-binding cassette sub-family A member 8-A-like NW_004955478 3792935 3863366 + 102024670 AGCD01055831;AGCD01055832;AGCD01055833;GBCE01103327;XM_013503212;XM_013503213;XM_013503214;XM_013503215;XM_013503216 XP_013358666;XP_013358667;XP_013358668;XP_013358669;XP_013358670 MODEL 8908823 protein-coding LOC102004683 uncharacterized LOC102004683 NW_004955464 12780991 12785037 + 102004683 AGCD01050228;GBDF01008922;XM_013521579 XP_013377033 MODEL 10132743 ncrna LOC106148819 uncharacterized LOC106148819 NW_004955429 15404247 15410627 - 106148819 AGCD01028806;GBDF01234926;XR_001234518 MODEL 10108889 ncrna LOC106147334 uncharacterized LOC106147334 NW_004955544 2976780 2997142 + 106147334 AGCD01071747;XR_001232178 MODEL 8778730 protein-coding LOC102025414 olfactory receptor 15-like NW_004955581 734996 752949 - 102025414 AGCD01075692;AGCD01075693;XM_005414267 XP_005414324 MODEL 8975640 protein-coding LOC102020826 olfactory receptor 5W2-like NW_004955511 5010843 5011778 + 102020826 AGCD01066542;XM_005408083 XP_005408140 MODEL 8833008 protein-coding Slc38a1 solute carrier family 38 member 1 ENCODES a protein that exhibits alanine:sodium symporter activity (ortholog); amino acid:sodium symporter activity (ortholog); glycine:sodium symporter activity (ortholog); INVOLVED IN amino acid import (ortholog); female pregnancy (ortholog); GABA biosynthetic process (ortholog); ASSOCIATED WITH Experimental Seizures (ortholog); hepatocellular carcinoma (ortholog); FOUND IN axon (ortholog); basolateral plasma membrane (ortholog); external side of apical plasma membrane (ortholog) NW_004955500 5393211 5468827 - 102011887 AGCD01063837;AGCD01063838;AGCD01063839;AGCD01063840;GBCC01020975;XM_005406597;XM_013505700;XR_001231494 XP_005406654;XP_013361154 MODEL 9005955 pseudo LOC102030261 60S ribosomal protein L35a pseudogene NW_004955451 1364407 1365867 + 102030261 AGCD01042967 MODEL 8829132 protein-coding LOC102023971 keratin-associated protein 2-1-like NW_004955451 15488262 15489049 - 102023971 AGCD01043611;XM_005394386 XP_005394443 MODEL 8720662 protein-coding Yipf5 Yip1 domain family member 5 INVOLVED IN Golgi organization (ortholog); insulin processing (ortholog); regulation of ER to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH Microcephaly, Epilepsy, and Diabetes Syndrome 2 (ortholog); FOUND IN COPII-coated ER to Golgi transport vesicle (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955415 9795214 9809871 + 102021548 AGCD01016110;GBDF01085610;XM_005380690 XP_005380747 MODEL 8778888 protein-coding LOC102029542 olfactory receptor 5B2-like NW_004955511 3388097 3389044 - 102029542 AGCD01066460;XM_005408032 XP_005408089 MODEL 8747700 protein-coding LOC102016368 vomeronasal type-2 receptor 26-like NW_004955413 5213370 5228381 - 102016368 AGCD01013656;AGCD01013657;AGCD01013658;XM_013511289 XP_013366743 MODEL 8814003 ncrna LOC102026811 uncharacterized LOC102026811 NW_004955446 6440418 6447980 + 102026811 AGCD01040097;GBDI01077878;XR_001235688;XR_001235689;XR_001235690;XR_001235691;XR_001235692 MODEL 8719435 protein-coding LOC102018242 vomeronasal type-2 receptor 1-like NW_004955448 7059300 7085760 + 102018242 AGCD01041399;AGCD01041400;XM_005393075 XP_005393132 MODEL 8781168 protein-coding Evl Enah/Vasp-like ENCODES a protein that exhibits profilin binding (ortholog); SH3 domain binding (ortholog); INVOLVED IN actin polymerization or depolymerization (ortholog); cellular response to type II interferon (ortholog); negative regulation of epithelial cell migration (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); focal adhesion (ortholog); lamellipodium (ortholog) NW_004955438 21198761 21298657 + 102004644 AGCD01035530;AGCD01035531;AGCD01035532;GBDK01078332;XM_005390426;XM_005390427;XM_005390428 XP_005390483;XP_005390484;XP_005390485 MODEL 8948179 protein-coding Phrf1 PHD and ring finger domains 1 ENCODES a protein that exhibits protein domain specific binding (ortholog); RNA polymerase binding (ortholog); INVOLVED IN mRNA processing (ortholog); transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Hirschsprung's disease (ortholog); systemic lupus erythematosus (ortholog) NW_004955476 11446194 11476892 - 102015313 AGCD01055458;AGCD01055459;GBDI01217169;XM_005401832;XM_005401833 XP_005401889;XP_005401890 MODEL 8889125 protein-coding LOC102019790 ral guanine nucleotide dissociation stimulator-like NW_004955413 5501732 5505766 - 102019790 AGCD01013681;AGCD01013682;GBDF01087005;GBDF01087006;XM_013511378 XP_013366832 MODEL 10355880 ncrna LOC106146504 uncharacterized LOC106146504 NW_004955482 2178914 2180850 + 106146504 AGCD01057229;GBDJ01197631;XR_001230960 MODEL 8969387 ncrna LOC102009425 uncharacterized LOC102009425 NW_004955549 824578 919142 - 102009425 AGCD01072431;GBCE01065742;XR_001232253;XR_001232254;XR_001232255;XR_001232256;XR_001232257;XR_264914 MODEL 8977098 protein-coding Scnn1b sodium channel epithelial 1 subunit beta ENCODES a protein that exhibits ligand-gated sodium channel activity (ortholog); sodium channel activity (ortholog); sodium ion transmembrane transporter activity (ortholog); INVOLVED IN aldosterone metabolic process (ortholog); artery smooth muscle contraction (ortholog); cellular response to acidic pH (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); Adrenal Insufficiency (ortholog); autism spectrum disorder (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); cytoplasmic vesicle membrane (ortholog) NW_004955493 1937507 1956248 + 102020681 AGCD01060915;GBBH01001430;GBCE01031423;XM_013504885 XP_013360339 MODEL 8889622 pseudo LOC102006469 signal recognition particle 14 kDa protein-like NW_004955492 7321458 7321798 + 102006469 AGCD01060786 MODEL 8815252 ncrna LOC102018669 uncharacterized LOC102018669 NW_004955450 1821752 1837551 + 102018669 AGCD01042371;GBDF01222200;XR_001235919;XR_262519 MODEL 10341834 ncrna LOC106148139 uncharacterized LOC106148139 NW_004955416 13602121 13610476 + 106148139 AGCD01017227;AGCD01017228;XR_001233307 MODEL 8726505 ncrna LOC102028472 uncharacterized LOC102028472 NW_004955547 2291235 2304297 - 102028472 AGCD01072266;AGCD01072267;AGCD01072268;GBDF01132937;XR_264906;XR_264907 MODEL 8962710 pseudo LOC102012194 single-stranded DNA-binding protein 2 pseudogene NW_004955477 6506741 6507624 - 102012194 AGCD01055610 MODEL 9017343 pseudo LOC102025743 tetratricopeptide repeat protein 30B-like NW_004955449 9986283 10009932 + 102025743 AGCD01042064 MODEL 10151691 pseudo LOC106147336 60S ribosomal protein L17 pseudogene NW_004955545 2113175 2114714 + 106147336 AGCD01071885 MODEL 9042486 protein-coding Phtf1 putative homeodomain transcription factor 1 FOUND IN cis-Golgi network membrane (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955435 16972120 17025861 - 102011904 AGCD01033343;GBDK01026270;XM_005388977;XM_005388978;XM_005388979;XM_013516424;XR_001234855;XR_001234856 XP_005389034;XP_005389035;XP_005389036;XP_013371878 MODEL 8744019 protein-coding LOC102006090 neutrophil cationic peptide 2-like NW_004955403 53736552 53738672 + 102006090 AGCD01003071;GBDF01020160;XM_005373838 XP_005373895 MODEL 8782965 protein-coding Bphl biphenyl hydrolase like ENCODES a protein that exhibits alpha-amino-acid esterase activity (ortholog); serine hydrolase activity (ortholog); INVOLVED IN homocysteine metabolic process (ortholog); xenobiotic metabolic process (ortholog); FOUND IN mitochondrion (ortholog) NW_004955465 10093342 10120588 - 102017109 AGCD01050501;AGCD01050502;GBCQ01001027;XM_005398902;XM_005398903;XM_013521831 XP_005398959;XP_005398960;XP_013377285 MODEL 8992688 protein-coding Tspan3 tetraspanin 3 ASSOCIATED WITH colorectal cancer (ortholog) NW_004955450 1916067 1937364 - 102020506 AGCD01042371;GBCB01005521;XM_005393482 XP_005393539 MODEL 10340989 protein-coding Gpr25 G protein-coupled receptor 25 ENCODES a protein that exhibits C-X-C chemokine receptor activity (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN chemokine-mediated signaling pathway (ortholog); leukocyte chemotaxis (ortholog); lymphocyte chemotaxis (ortholog); FOUND IN plasma membrane (ortholog) NW_004955406 37065511 37066771 + 106150185 AGCD01006571;GBBH01145319;XM_013522068 XP_013377522 MODEL 8731070 protein-coding Igsf6 immunoglobulin superfamily member 6 ASSOCIATED WITH allergic contact dermatitis (ortholog); Experimental Liver Cirrhosis (ortholog) NW_004955493 1109910 1119806 - 102017349 AGCD01060878;GBDK01072125;XM_005405086 XP_005405143 MODEL 9067063 ncrna LOC102018672 uncharacterized LOC102018672 NW_004955450 16469003 16471165 - 102018672 AGCD01042844;GBDF01179379;XR_001235843 MODEL 8792355 protein-coding Tyro3 TYRO3 protein tyrosine kinase ENCODES a protein that exhibits phosphatidylinositol 3-kinase binding (ortholog); protein tyrosine kinase activity (ortholog); virus receptor activity (ortholog); INVOLVED IN apoptotic cell clearance (ortholog); forebrain cell migration (ortholog); natural killer cell differentiation (ortholog); ASSOCIATED WITH 46, XX Disorders of Sex Development (ortholog); hereditary breast ovarian cancer syndrome (ortholog); thrombosis (ortholog); FOUND IN cell surface (ortholog); endoplasmic reticulum membrane (ortholog); nuclear envelope (ortholog) NW_004955416 8361722 8377629 + 102008407 AGCD01017045;GBCE01008177;GBDI01185356;XM_013512649 XP_013368103 MODEL 10286392 ncrna LOC106146619 uncharacterized LOC106146619 NW_004955486 3959822 3960456 - 106146619 AGCD01059050;GBBH01122357;XR_001231147 MODEL 8943708 ncrna LOC102013376 uncharacterized LOC102013376 NW_004955453 7378233 7386961 + 102013376 AGCD01044743;GBDF01180127;XR_262716 MODEL 8796675 protein-coding Spmip3 sperm microtubule inner protein 3 NW_004955406 7651785 7682027 + 102005664 AGCD01005774;GBDF01049394;XM_005374774;XM_013520358 XP_005374831;XP_013375812 MODEL 9067309 protein-coding Tnnt1 troponin T1, slow skeletal type ENCODES a protein that exhibits tropomyosin binding (ortholog); troponin T binding (ortholog); INVOLVED IN negative regulation of muscle contraction (ortholog); skeletal muscle contraction (ortholog); slow-twitch skeletal muscle fiber contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH dilated cardiomyopathy (ortholog); genetic disease (ortholog); myopathy (ortholog); FOUND IN troponin complex (ortholog) NW_004955567 1039625 1050581 + 102004337 AGCD01074455;AGCD01074456;XM_005413353;XM_005413354;XM_013509279;XM_013509280 XP_005413410;XP_005413411;XP_013364733;XP_013364734 MODEL 8702923 protein-coding Ss18l1 SS18L1 subunit of BAF chromatin remodeling complex INVOLVED IN dendrite development (ortholog); positive regulation of dendrite morphogenesis (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); FOUND IN condensed chromosome, centromeric region (ortholog); cytosol (ortholog); kinetochore (ortholog) NW_004955528 1849457 1881138 - 102004749 AGCD01069574;GBCB01004872;XM_005410035;XM_005410036;XM_005410037;XM_013507508;XM_013507509;XM_013507510;XR_264698 XP_005410092;XP_005410093;XP_005410094;XP_013362962;XP_013362963;XP_013362964 MODEL 9037898 ncrna LOC102024337 uncharacterized LOC102024337 NW_004955418 19468435 19511449 + 102024337 AGCD01019195;GBCQ01141644;XR_260572 MODEL 10086316 pseudo LOC106149337 wee1-like protein kinase 2 NW_004955443 6847682 6849498 - 106149337 AGCD01038264 MODEL 8895235 pseudo LOC102003316 plasma membrane calcium-transporting ATPase 4 pseudogene NW_004955455 2108161 2110677 + 102003316 AGCD01045588 MODEL 8814864 pseudo LOC102004685 death effector domain-containing protein pseudogene NW_004955467 541544 543081 - 102004685 AGCD01051226 MODEL 8775586 protein-coding LOC102007543 tripartite motif-containing protein 5-like NW_004955414 21602756 21610062 - 102007543 AGCD01015424;XM_013511732 XP_013367186 MODEL 8892574 protein-coding LOC102024671 translational activator of cytochrome c oxidase 1 ENCODES a protein that exhibits mitochondrial ribosome binding (ortholog); mRNA binding (ortholog); rRNA binding (ortholog); INVOLVED IN mitochondrial respiratory chain complex IV assembly (ortholog); motor learning (ortholog); positive regulation of mitochondrial translation (ortholog); ASSOCIATED WITH cytochrome-c oxidase deficiency disease (ortholog); genetic disease (ortholog); Leigh disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955478 8198563 8204820 - 102024671 AGCD01056014;GBCE01168605;XM_005402203 XP_005402260 MODEL 10327998 ncrna LOC106147050 uncharacterized LOC106147050 NW_004955513 408434 416094 - 106147050 AGCD01066824;GBDF01181175;XR_001231756;XR_001231757 MODEL 10089250 protein-coding LOC106150156 uncharacterized LOC106150156 NW_004955466 1523167 1538670 - 106150156 AGCD01050710;AGCD01050711;GBCE01153039;GBDK01229592;XM_013521922 XP_013377376 MODEL 8764699 pseudo LOC102025415 transcription initiation factor TFIID subunit 12 pseudogene NW_004955449 9697333 9697775 - 102025415 AGCD01042052 MODEL 8750291 protein-coding Skap1 src kinase associated phosphoprotein 1 ENCODES a protein that exhibits protein kinase binding (ortholog); protein phosphatase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN positive regulation of adaptive immune response (ortholog); positive regulation of cell adhesion (ortholog); positive regulation of cell-cell adhesion mediated by integrin (ortholog); ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955451 12791633 13043249 + 102007962 AGCD01043430;AGCD01043431;AGCD01043432;AGCD01043433;AGCD01043434;AGCD01043435;AGCD01043436;AGCD01043437;AGCD01043438;AGCD01043439;AGCD01043440;AGCD01043441;AGCD01043442;AGCD01043443;AGCD01043444;GBDI01286676;XM_005394244;XM_005394245;XM_005394246;XM_013519393 XP_005394301;XP_005394302;XP_005394303;XP_013374847 MODEL 8739978 protein-coding LOC102007971 keratin-associated protein 20-2-like NW_004955407 30174961 30175134 + 102007971 AGCD01007628;XM_005375643 XP_005375700 MODEL 8797906 pseudo LOC102021572 10 kDa heat shock protein, mitochondrial pseudogene NW_004955424 22163915 22165511 + 102021572 AGCD01024935 MODEL 8998695 protein-coding Slc38a10 solute carrier family 38 member 10 INVOLVED IN bone development (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955506 1724426 1767582 + 102006935 AGCD01065273;GBBH01032038;XM_005407280;XM_005407281;XM_005407282;XM_005407283;XM_005407284;XM_005407285;XM_013506030 XP_005407337;XP_005407338;XP_005407339;XP_005407340;XP_005407341;XP_005407342;XP_013361484 MODEL 8928234 protein-coding Krtap29-1 keratin associated like protein 29-1 NW_004955451 15702932 15712934 - 102026706 AGCD01043634;GBDI01234356;XM_005394393;XM_013519184;XR_001235962 XP_005394450;XP_013374638 MODEL 8979945 protein-coding Yipf6 Yip1 domain family member 6 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN intestinal epithelial cell development (ortholog); FOUND IN cis-Golgi network (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); endoplasmic reticulum (ortholog) NW_004955475 8085017 8101624 + 102013714 AGCD01055030;GBDF01158849;XM_005401586;XM_013502880 XP_005401643;XP_013358334 MODEL 10122848 ncrna LOC106147748 uncharacterized LOC106147748 NW_004955409 31626557 31669985 + 106147748 AGCD01010332;AGCD01010333;AGCD01010334;AGCD01010335;GBDF01192739;XR_001232679;XR_001232680;XR_001232681 MODEL 10182125 protein-coding LOC106146764 uncharacterized LOC106146764 NW_004955495 1518026 1520121 - 106146764 AGCD01061697;GBDK01412074;XM_013505051 XP_013360505 MODEL 10065016 ncrna LOC106146620 uncharacterized LOC106146620 NW_004955486 3960947 3961453 + 106146620 AGCD01059050;GBDK01100079;XR_001231148 MODEL 8915909 protein-coding LOC102003647 olfactory receptor 51G2-like NW_004955414 20928805 20929740 - 102003647 AGCD01015395;XM_005380487 XP_005380544 MODEL 8874949 pseudo LOC102019797 mitochondrial fission factor pseudogene NW_004955414 25120858 25122118 + 102019797 AGCD01015576;XM_005380525 MODEL 8946871 protein-coding Evpl envoplakin INVOLVED IN keratinocyte differentiation (ortholog); peptide cross-linking (ortholog); regulation of antibacterial peptide production (ortholog); FOUND IN cornified envelope (ortholog); cytosol (ortholog); intermediate filament cytoskeleton (ortholog) NW_004955506 6227488 6246339 + 102007355 AGCD01065403;AGCD01065404;GBDK01022181;XM_005407464 XP_005407521 MODEL 8905778 protein-coding Pla2g15 phospholipase A2 group XV ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); acylglycerol O-acyltransferase activity (ortholog); acyltransferase activity, transferring groups other than amino-acyl groups (ortholog); INVOLVED IN ceramide metabolic process (ortholog); diacylglycerol biosynthetic process (ortholog); glycerophospholipid metabolic process (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; ASSOCIATED WITH arteriosclerosis (ortholog); COVID-19 (ortholog); FOUND IN extracellular region (ortholog); lysosome (ortholog); membrane (ortholog) NW_004955484 8386274 8412952 - 102010372 AGCD01058377;AGCD01058378;AGCD01058379;AGCD01058380;GBDF01154221;XM_005403586 XP_005403643 MODEL 10315035 protein-coding LOC106148140 uncharacterized protein KIAA1644 homolog NW_004955416 14995852 14999609 + 106148140 AGCD01017295;GBBH01221190;XM_013512478;XM_013512479 XP_013367932;XP_013367933 MODEL 8964392 protein-coding LOC102024339 E3 ubiquitin-protein ligase TRIM38-like NW_004955483 1042352 1060507 - 102024339 AGCD01057639;GBBH01115170;XM_005403321;XM_005403322;XM_005403323 XP_005403378;XP_005403379;XP_005403380 MODEL 9052452 protein-coding LOC102029545 olfactory receptor 5D13-like NW_004955511 502518 504250 + 102029545 AGCD01066332;XM_013506357 XP_013361811 MODEL 8979103 ncrna LOC102006092 uncharacterized LOC102006092 NW_004955405 12203636 12228952 - 102006092 AGCD01004849;GBDK01148852;XR_001235355;XR_001235356;XR_001235357;XR_001235358 MODEL 8914282 ncrna LOC102018674 uncharacterized LOC102018674 NW_004955451 315679 320230 - 102018674 AGCD01042932;GBDK01028726;XR_262564 MODEL 9040448 protein-coding Tgfbr3l transforming growth factor beta receptor 3 like FOUND IN plasma membrane (ortholog) NW_004955563 1348698 1353748 - 102014621 AGCD01074142;AGCD01074143;GBDI01034405;XM_013509129 XP_013364583 MODEL 8817378 ncrna LOC102013385 uncharacterized LOC102013385 NW_004955456 7020296 7021629 + 102013385 AGCD01046384;GBDF01208136;XR_262885 MODEL 8916098 protein-coding Nek11 NIMA related kinase 11 ENCODES a protein that exhibits ATP binding (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN intracellular signal transduction (ortholog); mitotic intra-S DNA damage checkpoint signaling (ortholog); protein phosphorylation (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955501 7107858 7375079 - 102012557 AGCD01064204;AGCD01064205;AGCD01064206;AGCD01064207;AGCD01064208;AGCD01064209;AGCD01064210;AGCD01064211;AGCD01064212;AGCD01064213;AGCD01064214;GBDK01060055;XM_005406852;XM_005406853;XM_005406856;XM_005406857;XM_013505736 XP_005406909;XP_005406910;XP_005406913;XP_005406914;XP_013361190 MODEL 8941618 protein-coding Bpi bactericidal permeability increasing protein ENCODES a protein that exhibits lipopolysaccharide binding (ortholog); INVOLVED IN defense response to bacterium (ortholog); immune response (ortholog); negative regulation of interleukin-6 production (ortholog); ASSOCIATED WITH Crohn's disease (ortholog); severe acute respiratory syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); extracellular region (ortholog) NW_004955445 18393854 18433948 - 102012913 AGCD01039904;GBCQ01100945;XM_005392537;XM_013518374;XM_013518375;XM_013518376 XP_005392594;XP_013373828;XP_013373829;XP_013373830 MODEL 8979477 protein-coding Pomt1 protein O-mannosyltransferase 1 ENCODES a protein that exhibits dolichyl-phosphate-mannose-protein mannosyltransferase activity (ortholog); mannosyltransferase activity (ortholog); INVOLVED IN extracellular matrix organization (ortholog); positive regulation of protein O-linked glycosylation (ortholog); protein O-linked glycosylation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2K (ortholog); FOUND IN acrosomal vesicle (ortholog); dolichyl-phosphate-mannose-protein mannosyltransferase complex (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955513 1189169 1203933 + 102021696 AGCD01066845;GBDF01007560;XM_005408363;XM_013506609;XM_013506610;XM_013506611;XM_013506612;XM_013506613 XP_005408420;XP_013362063;XP_013362064;XP_013362065;XP_013362066;XP_013362067 MODEL 405822153 mirna MIR539 microRNA 539 9059248 ncrna LOC102009427 uncharacterized LOC102009427 NW_004955442 18649285 18656714 - 102009427 AGCD01038012;GBDF01055895;XR_262168 MODEL 8756539 protein-coding Spmip4 sperm microtubule inner protein 4 FOUND IN centrosome (ortholog) NW_004955410 27105104 27138654 - 102024536 AGCD01011209;GBCQ01155117;XM_005377430;XM_005377431 XP_005377487;XP_005377488 MODEL 8797959 ncrna LOC102022984 uncharacterized LOC102022984 NW_004955583 903467 919107 - 102022984 AGCD01075873;AGCD01075874;GBBH01177276;XR_001232507;XR_001232508;XR_001232509;XR_001232510;XR_265102 MODEL 8933361 ncrna LOC102020831 uncharacterized LOC102020831 NW_004955431 20933956 20943104 + 102020831 AGCD01030485;GBDF01144314;XR_261491 MODEL 8956642 protein-coding Slc38a11 solute carrier family 38 member 11 NW_004955449 9126231 9176698 + 102014098 AGCD01042037;GBDK01335030;XM_005393302;XM_005393303 XP_005393359;XP_005393360 MODEL 8857388 pseudo LOC102003317 mRNA-decapping enzyme 1A pseudogene NW_004955407 3818922 3820235 - 102003317 AGCD01006866 MODEL 8885121 ncrna LOC102024674 uncharacterized LOC102024674 NW_004955417 29322605 29376478 + 102024674 AGCD01018597;GBDF01149810;XR_260515 MODEL 8952713 protein-coding Paqr8 progestin and adipoQ receptor family member 8 FOUND IN plasma membrane (ortholog) NW_004955411 5691228 5743438 - 102012939 AGCD01011656;AGCD01011657;AGCD01011658;AGCD01011659;AGCD01011660;AGCD01011661;GBDF01191918;XM_005377925 XP_005377982 MODEL 10392405 pseudo LOC106147337 FAST kinase domain-containing protein 1-like NW_004955545 302521 305066 + 106147337 AGCD01071783 MODEL 8729990 ncrna LOC102025746 uncharacterized LOC102025746 NW_004955613 212953 216592 + 102025746 AGCD01077204;GBDI01049013;XR_001232581 MODEL 10364380 protein-coding LOC106146765 uncharacterized LOC106146765 NW_004955495 3809710 3811350 + 106146765 AGCD01061882;AGCD01061883;GBDF01277044;XM_013505054 XP_013360508 MODEL 10211067 ncrna LOC106150157 uncharacterized LOC106150157 NW_004955466 3279395 3291731 + 106150157 AGCD01050788;GBDF01048271;XR_001236802 MODEL 8892103 protein-coding Leprotl1 leptin receptor overlapping transcript like 1 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog) NW_004955463 6580294 6585738 + 102007870 AGCD01049685;GBDI01020304;XM_013521532 XP_013376986 MODEL 10309222 pseudo LOC106148820 RNA 3'-terminal phosphate cyclase-like protein pseudogene NW_004955429 22595750 22597017 - 106148820 AGCD01029032 MODEL 8897593 protein-coding Gpr26 G protein-coupled receptor 26 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH prostate cancer (ortholog) NW_004955477 1769585 1789838 + 102027405 AGCD01055509;AGCD01055510;XM_005401962 XP_005402019 MODEL 8768500 protein-coding Tyrobp transmembrane immune signaling adaptor TYROBP ENCODES a protein that exhibits identical protein binding (ortholog); molecular adaptor activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); amyloid-beta clearance (ortholog); apoptotic cell clearance (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); liver disease (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955468 2673657 2677633 + 102015303 AGCD01051831;AGCD01051832;GBDK01012952;XM_005399941;XM_013522542 XP_005399998;XP_013377996 MODEL 8958331 protein-coding Skap2 src kinase associated phosphoprotein 2 INVOLVED IN negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955410 28447073 28618450 - 102028940 AGCD01011250;AGCD01011251;AGCD01011252;AGCD01011253;AGCD01011254;GBDJ01316638;XM_005377444 XP_005377501 MODEL 9048285 protein-coding Scnn1d sodium channel epithelial 1 subunit delta ENCODES a protein that exhibits sodium channel activity (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); intracellular sodium ion homeostasis (ortholog); sodium ion import across plasma membrane (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; FOUND IN actin cytoskeleton (ortholog); apical plasma membrane (ortholog); membrane (ortholog) NW_004955486 9508435 9514107 - 102028865 AGCD01059188;GBDI01243410;XM_005404326 XP_005404383 MODEL 8968508 protein-coding Ss18l2 SS18 like 2 NW_004955420 28203226 28205284 - 102027534 AGCD01021472;GBCE01117079;XM_005383539 XP_005383596 MODEL 8940072 protein-coding Yipf7 Yip1 domain family member 7 INVOLVED IN Golgi organization (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955443 3405515 3427774 + 102006292 AGCD01038192;GBCB01001162;XM_013518067;XM_013518068 XP_013373521;XP_013373522 MODEL 8766792 pseudo LOC102030265 ubiquitin-conjugating enzyme E2 N-like NW_004955451 16728000 16736595 - 102030265 AGCD01043701;AGCD01043702 MODEL 8762503 protein-coding LOC102027798 leucine-twenty homeobox-like NW_004955578 1304640 1306879 + 102027798 AGCD01075519;XM_005414097 XP_005414154 MODEL 8824458 protein-coding LOC102028474 vomeronasal type-1 receptor 2-like NW_004955558 467893 468906 - 102028474 AGCD01073371;XM_005412735 XP_005412792 MODEL 9016990 protein-coding Gata4 GATA binding protein 4 ENCODES a protein that exhibits chromatin binding (ortholog); cis-regulatory region sequence-specific DNA binding (ortholog); co-SMAD binding (ortholog); INVOLVED IN aortic valve morphogenesis (ortholog); atrial septum morphogenesis (ortholog); atrial septum primum morphogenesis (ortholog); ASSOCIATED WITH 46,XY sex reversal 3 (ortholog); alcohol use disorder (ortholog); Animal Disease Models (ortholog); FOUND IN chromatin (ortholog); nuclear body (ortholog); nucleus (ortholog) NW_004955403 52958318 53029267 + 102029354 AGCD01003023;AGCD01003024;AGCD01003025;AGCD01003026;AGCD01003027;GBDF01085885;GBDF01085887;XM_005373824;XM_013514543;XM_013514548;XM_013514552 XP_005373881;XP_013369997;XP_013370002;XP_013370006 MODEL 8719560 protein-coding Tgfbrap1 transforming growth factor beta receptor associated protein 1 ENCODES a protein that exhibits SMAD binding (ortholog); transforming growth factor beta receptor binding (ortholog); INVOLVED IN endosomal vesicle fusion (ortholog); endosome to lysosome transport (ortholog); regulation of DNA-templated transcription (ortholog); PARTICIPATES IN transforming growth factor-beta Smad dependent signaling pathway; ASSOCIATED WITH long QT syndrome (ortholog); FOUND IN CORVET complex (ortholog); early endosome (ortholog); membrane (ortholog) NW_004955470 10178936 10223234 - 102027290 AGCD01052858;AGCD01052859;GBDI01294775;XM_005400783;XM_005400784;XM_005400785;XM_013522763 XP_005400840;XP_005400841;XP_005400842;XP_013378217 MODEL 10252126 protein-coding LOC106147052 janus kinase and microtubule-interacting protein 2-like NW_004955514 4087297 4102789 + 106147052 AGCD01067127;XM_013506748 XP_013362202 MODEL 8918761 ncrna LOC102003654 uncharacterized LOC102003654 NW_004955417 11249264 11260937 - 102003654 AGCD01018126;AGCD01018127;GBBH01160626;XR_260474 MODEL 9008699 ncrna LOC102007974 uncharacterized LOC102007974 NW_004955462 12999013 13022290 + 102007974 AGCD01049421;GBDF01013996;XR_263132 MODEL 8946061 protein-coding Spmip5 sperm microtubule inner protein 5 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH substance-related disorder (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); cytoplasm (ortholog); sperm flagellum (ortholog) NW_004955431 21454858 21463068 - 102024150 AGCD01030496;GBDF01044869;XM_005387855;XM_013515844 XP_005387912;XP_013371298 MODEL 8920238 ncrna LOC102003985 uncharacterized LOC102003985 NW_004955424 19333276 19352042 + 102003985 AGCD01024815;AGCD01024816;GBDF01262654;XR_261082 MODEL 8881765 protein-coding Pla2g1b phospholipase A2 group IB ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); bile acid binding (ortholog); calcium ion binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); arachidonate secretion (ortholog); cellular response to insulin stimulus (ortholog); ASSOCIATED WITH Insulin Resistance (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog); secretory granule (ortholog) NW_004955455 11308848 11316245 + 102013049 AGCD01045994;AGCD01045995;AGCD01045996;GBDK01431833;XM_005396512 XP_005396569 MODEL 8845253 ncrna LOC102022281 uncharacterized LOC102022281 NW_004955476 9313471 9320745 + 102022281 AGCD01055382;GBDF01119901;XR_263628;XR_263629 MODEL 8815284 pseudo LOC102021576 39S ribosomal protein L32, mitochondrial pseudogene NW_004955426 18028126 18029000 + 102021576 AGCD01026510 MODEL 8793702 pseudo LOC102004689 L-lactate dehydrogenase A chain pseudogene NW_004955414 13639147 13640738 - 102004689 AGCD01015115;XR_260167 MODEL 8928672 protein-coding Tnnt2 troponin T2, cardiac type ENCODES a protein that exhibits actin binding (ortholog); identical protein binding (ortholog); microfilament motor activity (ortholog); INVOLVED IN actin crosslink formation (ortholog); atrial cardiac muscle tissue morphogenesis (ortholog); cardiac muscle contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); beta thalassemia (ortholog); Cardiomegaly (ortholog); FOUND IN cardiac myofibril (ortholog); cardiac Troponin complex (ortholog); cytoplasm (ortholog) NW_004955406 37491462 37507360 - 102012924 AGCD01006576;GBDJ01136129;XM_005375170;XM_005375171;XM_005375172;XM_005375175;XM_005375176;XM_005375177;XM_005375179;XM_005375180;XM_013522177;XM_013522187;XM_013522212 XP_005375227;XP_005375228;XP_005375229;XP_005375232;XP_005375233;XP_005375234;XP_005375236;XP_005375237;XP_013377631;XP_013377641;XP_013377666 MODEL 8875411 ncrna LOC102007976 uncharacterized LOC102007976 NW_004955465 144325 179094 + 102007976 AGCD01050304;GBDF01285865;XR_263226 MODEL 8741198 protein-coding LOC102023973 keratin-associated protein 4-11-like NW_004955451 15452600 15453615 - 102023973 AGCD01043608;AGCD01043609;XM_013519125 XP_013374579 MODEL 8968855 ncrna LOC102012196 uncharacterized LOC102012196 NW_004955417 7422583 7435827 - 102012196 AGCD01018004;GBDF01079001;XR_260462 MODEL 8976483 protein-coding Nek2 NIMA related kinase 2 ENCODES a protein that exhibits protein kinase activity (ortholog); protein phosphatase binding (ortholog); INVOLVED IN blastocyst development (ortholog); centrosome separation (ortholog); chromosome segregation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); fundus dystrophy (ortholog); hepatocellular carcinoma (ortholog); FOUND IN centrosome (ortholog); condensed nuclear chromosome (ortholog); kinetochore (ortholog) NW_004955406 5553661 5563648 + 102024976 AGCD01005731;GBDK01356788;XM_005374754 XP_005374811 MODEL 9024014 protein-coding Phtf2 putative homeodomain transcription factor 2 FOUND IN endoplasmic reticulum (ortholog) NW_004955410 7344526 7442802 - 102009585 AGCD01010712;AGCD01010713;AGCD01010714;GBCB01020131;XM_005377206;XM_005377207;XM_005377208;XM_005377209;XM_013510512 XP_005377263;XP_005377264;XP_005377265;XP_005377266;XP_013365966 MODEL 9037759 ncrna LOC102016369 uncharacterized LOC102016369 NW_004955469 3101101 3110447 + 102016369 AGCD01052289;GBBH01172987;XR_263427 MODEL 9067082 protein-coding LOC102019799 proline-rich protein 2-like NW_004955415 13940809 13946248 + 102019799 AGCD01016278;GBCB01033686;XM_005380769 XP_005380826 MODEL 10079112 ncrna LOC106146782 uncharacterized LOC106146782 NW_004955495 7817158 7817865 - 106146782 AGCD01062167;GBBH01055122;XR_001231347 MODEL 8791315 protein-coding LOC102018249 nuclear RNA export factor 2-like NW_004956329 1022 3854 - 102018249 AGCD01079439;GBDK01180906;XM_005415196 XP_005415253 MODEL 8788406 protein-coding Tspan31 tetraspanin 31 ASSOCIATED WITH familial melanoma (ortholog); Hereditary Neoplastic Syndromes (ortholog) NW_004955458 5455012 5457912 + 102010452 AGCD01047493;GBDI01358535;XM_005397412 XP_005397469 MODEL 8716803 protein-coding Slc38a12 solute carrier family 38 member 12 ASSOCIATED WITH basal cell carcinoma (ortholog) NW_004955553 1664464 1726965 + 102014614 AGCD01072893;AGCD01072894;AGCD01072895;AGCD01072896;AGCD01072897;GBDF01039977;XM_005412255;XM_005412256;XM_013508654;XM_013508655 XP_005412312;XP_005412313;XP_013364108;XP_013364109 MODEL 9045575 pseudo LOC102028477 40S ribosomal protein S18 pseudogene NW_004955443 3595140 3596141 - 102028477 AGCD01038195 MODEL 10297807 ncrna LOC106147338 uncharacterized LOC106147338 NW_004955408 2762457 2786387 - 106147338 AGCD01008034;GBDF01143869;XR_001232181;XR_001232182 MODEL 8787308 ncrna LOC102024682 uncharacterized LOC102024682 NW_004955420 11668658 11669730 - 102024682 AGCD01020827;GBDF01224180;XR_001233716 MODEL 39131574 protein-coding PAQR8 progestin and adipoQ receptor family member 8 40834595 protein-coding KRTAP4-3 keratin associated protein 4-3 10347514 protein-coding LOC106146766 translation initiation factor IF-2-like NW_004955495 3915217 3915697 + 106146766 AGCD01061888;GBDJ01051039;XM_013505055 XP_013360509 MODEL 8912026 pseudo LOC102016370 V-type proton ATPase subunit G 1 pseudogene NW_004955469 8848432 8848785 + 102016370 AGCD01052482 MODEL 8945824 protein-coding Letm1 leucine zipper and EF-hand containing transmembrane protein 1 ENCODES a protein that exhibits calcium:proton antiporter activity (ortholog); potassium:proton antiporter activity (ortholog); INVOLVED IN calcium export from the mitochondrion (ortholog); calcium ion transport (ortholog); cristae formation (ortholog); ASSOCIATED WITH Craniofacial Abnormalities (ortholog); Developmental Disabilities (ortholog); Ependymomas (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955514 1040103 1069297 - 102019836 AGCD01067032;AGCD01067033;AGCD01067034;GBBH01092661;GBDF01155938;XM_013506764 XP_013362218 MODEL 10166471 ncrna LOC106147749 uncharacterized LOC106147749 NW_004955409 31632991 31633889 - 106147749 AGCD01010332;GBDF01125116;XR_001232682 MODEL 10151709 ncrna LOC106149338 uncharacterized LOC106149338 NW_004955443 8332569 8357339 + 106149338 AGCD01038322;AGCD01038323;GBDI01311963;XR_001235459;XR_001235460;XR_001235461;XR_001235462;XR_001235463 MODEL 8933148 protein-coding LOC102007544 seminal plasma acrosin inhibitor A1-like NW_004955415 5997416 6041627 + 102007544 AGCD01016005;AGCD01016006;AGCD01016007;AGCD01016008;AGCD01016009;GBDJ01337989;XM_005380645;XM_005380648;XM_005380649;XM_013512381;XM_013512382;XM_013512383;XM_013512384;XM_013512385 XP_005380702;XP_005380705;XP_005380706;XP_013367835;XP_013367836;XP_013367837;XP_013367838;XP_013367839 MODEL 8753509 protein-coding Pomt2 protein O-mannosyltransferase 2 ENCODES a protein that exhibits dolichyl-phosphate-mannose-protein mannosyltransferase activity (ortholog); mannosyltransferase activity (ortholog); INVOLVED IN basement membrane organization (ortholog); dentate gyrus development (ortholog); positive regulation of protein O-linked glycosylation (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2N (ortholog); FOUND IN dolichyl-phosphate-mannose-protein mannosyltransferase complex (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955438 1179064 1218860 - 102013869 AGCD01034976;GBDI01292675;XM_005390192;XM_005390193;XM_005390194 XP_005390249;XP_005390250;XP_005390251 MODEL 8875618 protein-coding Tyrp1 tyrosinase related protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein homodimerization activity (ortholog); tyrosinase activity (ortholog); INVOLVED IN eye development (ortholog); eye pigmentation (ortholog); melanin metabolic process (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); genetic disease (ortholog); Lung Neoplasms (ortholog); FOUND IN clathrin-coated endocytic vesicle membrane (ortholog); cytoplasm (ortholog); endosome membrane (ortholog) NW_004955434 15913208 15932193 + 102012890 AGCD01032499;GBDF01054868;XM_005388689 XP_005388746 MODEL 126903067 mirna MIR542 microRNA 542 8818814 protein-coding Scnn1g sodium channel epithelial 1 subunit gamma ENCODES a protein that exhibits ligand-gated sodium channel activity (ortholog); monoatomic ion channel activity (ortholog); sodium channel activity (ortholog); INVOLVED IN cellular response to acidic pH (ortholog); cellular response to aldosterone (ortholog); intracellular sodium ion homeostasis (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); autism spectrum disorder (ortholog); autosomal recessive pseudohypoaldosteronism type 1 (ortholog); FOUND IN apical plasma membrane (ortholog); cell surface (ortholog); external side of plasma membrane (ortholog) NW_004955493 1787693 1813085 + 102019924 AGCD01060908;AGCD01060909;GBDF01224981;GBDJ01136157;XM_013504874 XP_013360328 MODEL 8743533 protein-coding Evx1 even-skipped homeobox 1 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN embryo development ending in birth or egg hatching (ortholog); interneuron migration (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); FOUND IN axon (ortholog); cell body (ortholog) NW_004955410 28939416 28942751 + 102007748 AGCD01011267;XM_005377464 XP_005377521 MODEL 8803265 protein-coding Ssb small RNA binding exonuclease protection factor La ENCODES a protein that exhibits poly(U) RNA binding (ortholog); RNA binding (ortholog); sequence-specific mRNA binding (ortholog); INVOLVED IN IRES-dependent viral translational initiation (ortholog); nuclear histone mRNA catabolic process (ortholog); protein localization to cytoplasmic stress granule (ortholog); PARTICIPATES IN tRNA maturation pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955449 4806468 4815175 - 102024070 AGCD01041895;AGCD01041896;AGCD01041897;AGCD01041898;GBCQ01004014;XM_013518786 XP_013374240 MODEL 8905923 protein-coding Igsf8 immunoglobulin superfamily member 8 ENCODES a protein that exhibits signaling receptor activity (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); positive regulation of cell migration (ortholog); regulation of cell motility (ortholog); FOUND IN axon (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); membrane (ortholog) NW_004955468 11877369 11883962 - 102013814 AGCD01052139;GBDI01182195;XM_005400193 XP_005400250 MODEL 8832665 protein-coding LOC102025750 guanylate-binding protein 6-like NW_004956635 1144 3658 + 102025750 AGCD01079928;GBBH01171746;XM_005415207 XP_005415264 MODEL 8818011 protein-coding Tgif1 TGFB induced factor homeobox 1 ENCODES a protein that exhibits chromatin binding (ortholog); co-SMAD binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); determination of left/right symmetry (ortholog); dorsal/ventral pattern formation (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); disorder of sexual development (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955402 7130809 7138945 - 102014189 AGCD01000165;AGCD01000166;GBBH01064453;GBDI01173900;XM_005372651 XP_005372708 MODEL 10298477 ncrna LOC106148141 uncharacterized LOC106148141 NW_004955416 24200317 24207101 + 106148141 AGCD01017564;GBDJ01019589;XR_001233314 MODEL 10338850 ncrna LOC106146783 uncharacterized LOC106146783 NW_004955495 7904993 7924804 + 106146783 AGCD01062172;AGCD01062173;GBDI01238210;XR_001231348 MODEL 8730120 protein-coding Nek3 NIMA related kinase 3 INVOLVED IN establishment of cell polarity (ortholog); neuron projection morphogenesis (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog) NW_004955431 5382992 5412206 - 102008339 AGCD01030025;AGCD01030026;AGCD01030027;AGCD01030028;GBBH01101340;GBDJ01007552;XM_005387620;XM_013515774;XM_013515775;XM_013515776;XM_013515777;XM_013515778;XM_013515779 XP_005387677;XP_013371228;XP_013371229;XP_013371230;XP_013371231;XP_013371232;XP_013371233 MODEL 8773245 protein-coding Pon1 paraoxonase 1 ENCODES a protein that exhibits acyl-L-homoserine-lactone lactonohydrolase activity (ortholog); aryldialkylphosphatase activity (ortholog); arylesterase activity (ortholog); INVOLVED IN carboxylic acid catabolic process (ortholog); cholesterol metabolic process (ortholog); lactone catabolic process (ortholog); PARTICIPATES IN clopidogrel pharmacodynamics pathway; clopidogrel pharmacokinetics pathway; organophosphate response pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Acute Coronary Syndrome (ortholog); acute lymphoblastic leukemia (ortholog); FOUND IN extracellular region (ortholog); high-density lipoprotein particle (ortholog); spherical high-density lipoprotein particle (ortholog) NW_004955432 11893473 11923035 - 102016942 AGCD01030957;GBBH01000456;XM_005388060;XM_005388062 XP_005388117;XP_005388119 MODEL 8934636 protein-coding Phyh phytanoyl-CoA 2-hydroxylase ENCODES a protein that exhibits carboxylic acid binding (ortholog); catalytic activity (ortholog); ferrous iron binding (ortholog); INVOLVED IN 2-oxobutyrate catabolic process (ortholog); 2-oxoglutarate metabolic process (ortholog); fatty acid alpha-oxidation (ortholog); PARTICIPATES IN phytanic acid degradation pathway; Refsum disease pathway; ASSOCIATED WITH Adult Refsum Disease, 1 (ortholog); Familial Hypophosphatemic Rickets (ortholog); fundus dystrophy (ortholog); FOUND IN 9+0 non-motile cilium (ortholog); peroxisome (ortholog) NW_004955462 1238622 1250731 - 102011630 AGCD01049103;GBCB01113496;GBDJ01135425;XM_005398098 XP_005398155 MODEL 9000478 protein-coding Lrrc27 leucine rich repeat containing 27 NW_004955477 9970199 10005562 + 102024797 AGCD01055688;GBDF01045980;XM_005402041;XM_013503095;XM_013503096;XM_013503097;XM_013503098;XM_013503099;XM_013503100 XP_005402098;XP_013358549;XP_013358550;XP_013358551;XP_013358552;XP_013358553;XP_013358554 MODEL 10098298 protein-coding Gpr27 G protein-coupled receptor 27 INVOLVED IN positive regulation of insulin secretion involved in cellular response to glucose stimulus (ortholog); positive regulation of phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH malignant mesothelioma (ortholog); FOUND IN plasma membrane (ortholog) NW_004955421 16352643 16353094 - 106148423 AGCD01021998;GBCE01104270;GBDJ01170215;XM_013513673 XP_013369127 MODEL 9065681 protein-coding LOC102013387 olfactory receptor 10A2-like NW_004955458 2450590 2451552 - 102013387 AGCD01047233;XM_005397241 XP_005397298 MODEL 8907599 protein-coding Ski SKI proto-oncogene ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN anterior/posterior axis specification (ortholog); bone morphogenesis (ortholog); camera-type eye development (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH aortic aneurysm (ortholog); ARTERIAL DISSECTION (ortholog); autism spectrum disorder (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nuclear body (ortholog) NW_004955486 8857693 8921821 - 102008948 AGCD01059156;GBCC01038296;GBCE01052647;XM_005404174 XP_005404231 MODEL 10070034 protein-coding LOC106146767 uncharacterized LOC106146767 NW_004955495 5343278 5347546 - 106146767 AGCD01062001;AGCD01062002;GBCB01102569;XM_013505056 XP_013360510 MODEL 9030704 ncrna LOC102022985 uncharacterized LOC102022985 NW_004955402 30355688 30371406 - 102022985 AGCD01000769;GBCQ01030393;XR_259071 MODEL 8820897 pseudo LOC102004690 glucocorticoid modulatory element-binding protein 1 pseudogene NW_004955469 10849261 10850647 + 102004690 AGCD01052551 MODEL 8991833 protein-coding LOC102020832 NUT family member 2G-like NW_004955515 3902660 3910566 - 102020832 AGCD01067307;GBDF01224313;XM_013506862 XP_013362316 MODEL 8772149 protein-coding LOC102003656 zinc finger protein 878-like NW_004955483 540140 571870 + 102003656 AGCD01057622;AGCD01057623;GBDF01054439;XM_013503796;XM_013503797 XP_013359250;XP_013359251 MODEL 9040518 pseudo LOC102019801 KDEL motif-containing protein 2 pseudogene NW_004955415 5789037 5790513 - 102019801 AGCD01016001 MODEL 8828800 protein-coding Gata5 GATA binding protein 5 ENCODES a protein that exhibits cis-regulatory region sequence-specific DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); INVOLVED IN aortic valve morphogenesis (ortholog); cardiac jelly development (ortholog); cellular response to BMP stimulus (ortholog); ASSOCIATED WITH acute myocardial infarction (ortholog); aortic valve disease 1 (ortholog); ARTERIAL DISSECTION (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955528 1595231 1604979 + 102012999 AGCD01069566;GBDJ01420985;XM_005410057 XP_005410114 MODEL 9057953 pseudo LOC102012982 60S ribosomal protein L5 pseudogene NW_004955503 7021624 7022501 - 102012982 AGCD01064776 MODEL 10192355 ncrna LOC106147339 uncharacterized LOC106147339 NW_004955545 1764525 1768672 - 106147339 AGCD01071869;GBCQ01012353;XR_001232184 MODEL 8770267 ncrna LOC102006093 uncharacterized LOC102006093 NW_004955452 11238563 11263569 + 102006093 AGCD01044333;GBBH01084072;XR_001236059;XR_001236060;XR_001236061;XR_001236062;XR_262679 MODEL 8847848 pseudo LOC102028478 60S ribosomal protein L19 pseudogene NW_004955444 8796170 8796758 - 102028478 AGCD01038946 MODEL 8915852 pseudo LOC102025752 oxysterol-binding protein-related protein 9-like NW_004955403 4960076 4962093 + 102025752 AGCD01001801 MODEL 8893738 protein-coding Tspan32 tetraspanin 32 INVOLVED IN blood coagulation (ortholog); cytoskeleton organization (ortholog); defense response to protozoan (ortholog); FOUND IN cell surface (ortholog); integrin alphaIIb-beta3 complex (ortholog) NW_004955422 14101833 14121784 + 102008544 AGCD01022852;GBDK01393243;XM_005384201;XM_005384202 XP_005384258;XP_005384259 MODEL 8768356 protein-coding LOC102009432 olfactory receptor 7G2-like NW_004955563 246588 247514 + 102009432 AGCD01074056;XM_005413197 XP_005413254 MODEL 8834285 protein-coding Yjefn3 YjeF N-terminal domain containing 3 ASSOCIATED WITH urinary bladder cancer (ortholog) NW_004955524 2421350 2426509 - 102005628 AGCD01068817;GBDJ01273409;XM_013507296 XP_013362750 MODEL 8759352 pseudo LOC102023976 uncharacterized protein C12orf31 homolog pseudogene NW_004955405 9670993 9674084 + 102023976 AGCD01004787 MODEL 8723090 protein-coding LOC102027800 uncharacterized LOC102027800 NW_004955584 715563 720377 + 102027800 AGCD01075955;AGCD01075956;GBDF01076200;XM_013509847 XP_013365301 MODEL 8773064 protein-coding Phyhd1 phytanoyl-CoA dioxygenase domain containing 1 ENCODES a protein that exhibits 2-oxoglutarate-dependent dioxygenase activity (ortholog) NW_004955570 1298243 1308230 + 102012377 AGCD01074807;AGCD01074808;GBCB01020010;XM_013509414;XM_013509415 XP_013364868;XP_013364869 MODEL 8842726 protein-coding Letm2 leucine zipper and EF-hand containing transmembrane protein 2 FOUND IN mitochondrion (ortholog) NW_004955463 13990353 14012911 + 102024100 AGCD01049897;GBDF01044235;XM_005398447;XM_005398448;XM_013521513;XM_013521514;XM_013521515 XP_005398504;XP_005398505;XP_013376967;XP_013376968;XP_013376969 MODEL 8951968 protein-coding Tnnt3 troponin T3, fast skeletal type ENCODES a protein that exhibits actin binding (ortholog); calcium-dependent protein binding (ortholog); tropomyosin binding (ortholog); INVOLVED IN positive regulation of calcium-dependent ATPase activity (ortholog); regulation of ATP-dependent activity (ortholog); regulation of striated muscle contraction (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arthrogryposis multiplex congenita (ortholog); congenital myopathy (ortholog); distal arthrogryposis (ortholog); FOUND IN troponin complex (ortholog) NW_004955422 13702015 13718915 + 102029522 AGCD01022838;GBCB01024288;XM_013514170;XM_013514171;XM_013514172;XM_013514173;XM_013514174;XM_013514175;XM_013514176;XM_013514177;XM_013514178;XM_013514179;XM_013514180;XM_013514181;XM_013514182;XM_013514183 XP_013369624;XP_013369625;XP_013369626;XP_013369627;XP_013369628;XP_013369629;XP_013369630;XP_013369631;XP_013369632;XP_013369633;XP_013369634;XP_013369635;XP_013369636;XP_013369637 MODEL 8784974 protein-coding LOC102007547 cystatin-C-like NW_004955415 30648683 30672114 + 102007547 AGCD01016666;GBBH01008067;XM_005380977;XM_005380978;XM_013512401;XM_013512402;XM_013512403 XP_005381034;XP_005381035;XP_013367855;XP_013367856;XP_013367857 MODEL 8865728 protein-coding Ssbp1 single stranded DNA binding protein 1 ENCODES a protein that exhibits chromatin binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN mitochondrial DNA replication (ortholog); mitochondrion organization (ortholog); positive regulation of helicase activity (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); FOUND IN mitochondrial nucleoid (ortholog); mitochondrion (ortholog) NW_004955494 1807885 1826375 - 102013623 AGCD01061424;GBCE01077691;XM_005405404;XM_013505023 XP_005405461;XP_013360477 MODEL 8962793 pseudo LOC102018254 eukaryotic translation initiation factor 1 pseudogene NW_004955452 16336794 16337133 + 102018254 AGCD01044507 MODEL 9051602 ncrna LOC102022986 uncharacterized LOC102022986 NW_004955402 35983014 36086474 - 102022986 AGCD01000910;AGCD01000911;AGCD01000912;GBDF01084664;XR_001232816;XR_001232817;XR_001232818;XR_259079 MODEL 8726572 pseudo LOC102003988 PEST proteolytic signal-containing nuclear protein pseudogene NW_004955505 1483191 1484367 + 102003988 AGCD01064974;XM_005407108 MODEL 39131562 protein-coding BPIFA1 BPI fold containing family A member 1 8903147 pseudo LOC102022286 WW domain-binding protein 11 pseudogene NW_004955479 5664384 5666264 - 102022286 AGCD01056360 MODEL 8934067 protein-coding Slc38a2 solute carrier family 38 member 2 ENCODES a protein that exhibits acidic amino acid transmembrane transporter activity (ortholog); alanine:sodium symporter activity (ortholog); amino acid transmembrane transporter activity (ortholog); INVOLVED IN alanine transport (ortholog); amino acid import (ortholog); amino acid transmembrane transport (ortholog); ASSOCIATED WITH Contusions (ortholog); Experimental Diabetes Mellitus (ortholog); Experimental Seizures (ortholog); FOUND IN axon (ortholog); brush border (ortholog); cytoplasm (ortholog) NW_004955500 5517323 5530055 - 102012220 AGCD01063844;GBBH01063737;GBDI01139981;XM_005406598 XP_005406655 MODEL 8981366 protein-coding Spmip6 sperm microtubule inner protein 6 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); manchette (ortholog) NW_004955472 1718474 1733980 + 102028955 AGCD01053409;AGCD01053410;GBDF01007585;XM_005401076;XM_005401077;XM_005401078;XM_005401079;XM_005401080;XM_013522971 XP_005401133;XP_005401134;XP_005401135;XP_005401136;XP_005401137;XP_013378425 MODEL 9029511 protein-coding Pla2g2c phospholipase A2 group IIC INVOLVED IN phospholipid catabolic process (ortholog) NW_004955452 771031 783323 - 102017836 AGCD01043827;GBDI01034019;XM_005394677;XR_001236118 XP_005394734 MODEL 8862637 ncrna LOC102021581 uncharacterized LOC102021581 NW_004955506 2880718 2891543 + 102021581 AGCD01065304;GBCB01073532;XR_264339 MODEL 8722337 pseudo LOC102029549 E3 ubiquitin-protein ligase RNF13 pseudogene NW_004955434 3032214 3033357 + 102029549 AGCD01032121 MODEL 8818602 protein-coding Paqr9 progestin and adipoQ receptor family member 9 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955508 2971419 2975165 + 102012011 AGCD01065802;AGCD01065803;GBBH01137192;XM_005407735 XP_005407792 MODEL 9002255 protein-coding LOC102007981 translation initiation factor IF-2-like NW_004955413 24038776 24042868 - 102007981 AGCD01014345;GBDI01226162;XM_005379216 XP_005379273 MODEL 8921404 pseudo LOC102016371 ribosome biogenesis protein NSA2 homolog pseudogene NW_004955470 6566274 6569082 + 102016371 AGCD01052773 MODEL 8870091 protein-coding LOC102028481 vomeronasal type-2 receptor 116-like NW_004955584 825900 833182 - 102028481 AGCD01075963;AGCD01075964;GBBH01025360;GBCE01084998;XM_013509848 XP_013365302 MODEL 8999557 pseudo LOC102013388 calcium-transporting ATPase type 2C member 1 pseudogene NW_004955408 2427135 2428006 + 102013388 AGCD01008006 MODEL 8997329 ncrna LOC102012202 uncharacterized LOC102012202 NW_004955420 8650206 8667134 - 102012202 AGCD01020729;AGCD01020730;GBDF01286252;XR_260684 MODEL 8717710 protein-coding Gpr3 G protein-coupled receptor 3 INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway coupled to cGMP nucleotide second messenger (ortholog); negative regulation of cell cycle (ortholog); FOUND IN cytoplasm (ortholog); nuclear membrane (ortholog); plasma membrane (ortholog) NW_004955452 6648470 6651938 + 102004233 AGCD01044118;GBDF01030401;XM_005394907;XM_005394908 XP_005394964;XP_005394965 MODEL 41410900 mirna MIR544A microRNA 544a 10150034 ncrna LOC106150158 uncharacterized LOC106150158 NW_004955466 3550572 3585441 + 106150158 AGCD01050796;GBCQ01032464;XR_001236803 MODEL 10146082 ncrna LOC106148821 uncharacterized LOC106148821 NW_004955429 20833950 20836101 + 106148821 AGCD01028990;GBDJ01021287;XR_001234521 MODEL 8806182 protein-coding Tysnd1 trypsin like peroxisomal matrix peptidase 1 ENCODES a protein that exhibits identical protein binding (ortholog); protease binding (ortholog); serine-type endopeptidase activity (ortholog); INVOLVED IN protein processing (ortholog); proteolysis (ortholog); regulation of fatty acid beta-oxidation (ortholog); FOUND IN peroxisome (ortholog) NW_004955437 21094831 21105495 + 102025842 AGCD01034896;AGCD01034897;GBCE01070028;GBDF01127607;XM_013516961 XP_013372415 MODEL 8710451 protein-coding Skic2 SKI2 subunit of superkiller complex ENCODES a protein that exhibits 3'-5' RNA helicase activity (ortholog); ATP hydrolysis activity (ortholog); INVOLVED IN nuclear-transcribed mRNA catabolic process (ortholog); nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay (ortholog); nuclear-transcribed mRNA catabolic process, non-stop decay (ortholog); ASSOCIATED WITH genetic disease (ortholog); immunodeficiency 57 (ortholog); trichohepatoenteric syndrome (ortholog); FOUND IN nucleus (ortholog); Ski complex (ortholog) NW_004955437 473192 482811 + 102005746 AGCD01034137;GBDF01120948;XM_005389400 XP_005389457 MODEL 8705851 protein-coding Igsf9 immunoglobulin superfamily member 9 ENCODES a protein that exhibits cell-cell adhesion mediator activity (ortholog); INVOLVED IN dendrite development (ortholog); homophilic cell-cell adhesion (ortholog); regulation of synapse maturation (ortholog); FOUND IN axon (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955468 11722716 11741622 - 102011298 AGCD01052137;GBDF01166084;XM_005400184;XM_005400186;XM_005400187 XP_005400241;XP_005400243;XP_005400244 MODEL 8800425 protein-coding Evx2 even-skipped homeobox 2 ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN limb morphogenesis (ortholog); ASSOCIATED WITH Synpolydactyly 1 (ortholog) NW_004955403 20578813 20582409 + 102006198 AGCD01002167;AGCD01002168;XM_005373888 XP_005373945 MODEL 8932075 pseudo LOC102024690 disabled homolog 2 pseudogene NW_004955490 1872306 1876904 + 102024690 AGCD01060120 MODEL 8726496 protein-coding Krtcap2 keratinocyte associated protein 2 ENCODES a protein that exhibits enzyme activator activity (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN protein N-linked glycosylation (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); oligosaccharyltransferase complex (ortholog) NW_004955545 1642578 1645699 - 102027681 AGCD01071864;GBDF01000034;XM_005411578;XM_013508306 XP_005411635;XP_013363760 MODEL 10067473 protein-coding LOC106146621 uncharacterized LOC106146621 NW_004955486 8427301 8431045 + 106146621 AGCD01059150;GBCQ01000848;XM_013504328 XP_013359782 MODEL 10077054 ncrna LOC106147750 uncharacterized LOC106147750 NW_004955409 26509815 26573069 + 106147750 AGCD01010188;AGCD01010189;AGCD01010190;AGCD01010191;AGCD01010192;AGCD01010193;AGCD01010194;AGCD01010195;GBBH01216916;XR_001232683 MODEL 10388062 ncrna LOC106148142 uncharacterized LOC106148142 NW_004955416 14652436 14657988 + 106148142 AGCD01017279;GBDF01179592;XR_001233316 MODEL 10383193 protein-coding LOC106146784 vegetative cell wall protein gp1-like NW_004955495 1651573 1653266 + 106146784 AGCD01061709;XM_013505168 XP_013360622 MODEL 8878969 protein-coding Tmem170a transmembrane protein 170A INVOLVED IN endoplasmic reticulum tubular network organization (ortholog); nuclear envelope organization (ortholog); nuclear pore complex assembly (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); nuclear envelope (ortholog) NW_004955484 2057934 2078157 + 102020671 AGCD01058086;AGCD01058087;GBDF01089643;XM_005403446;XM_005403447 XP_005403503;XP_005403504 MODEL 8894317 protein-coding Lrrc28 leucine rich repeat containing 28 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955416 26668712 26786945 + 102004277 AGCD01017602;AGCD01017603;AGCD01017604;AGCD01017605;GBDF01002081;XM_005381627;XM_005381628;XM_013512542 XP_005381684;XP_005381685;XP_013367996 MODEL 10131593 ncrna LOC106149487 uncharacterized LOC106149487 NW_004955447 13877435 13917157 - 106149487 AGCD01040975;GBBH01108003;XR_001235708;XR_001235709 MODEL 8717200 protein-coding LOC102009434 zinc finger protein 709-like NW_004955569 187430 209724 + 102009434 AGCD01074566;GBDF01011185;XM_013509367 XP_013364821 MODEL 8702109 protein-coding LOC102029554 proline-rich protein 2-like NW_004955437 3579235 3586547 - 102029554 AGCD01034325;AGCD01034326;GBCB01117887;XM_013516730 XP_013372184 MODEL 8786131 protein-coding Sco1 synthesis of cytochrome C oxidase 1 INVOLVED IN copper ion homeostasis (ortholog); cyclooxygenase pathway (ortholog); gene expression (ortholog); ASSOCIATED WITH Acute Liver Failure (ortholog); brain disease (ortholog); cytochrome-c oxidase deficiency disease (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); myofibril (ortholog) NW_004955467 6519873 6535321 + 102030058 AGCD01051416;GBBH01167190;XM_005399357 XP_005399414 MODEL 8794307 ncrna LOC102020833 uncharacterized LOC102020833 NW_004955518 3974555 3992147 - 102020833 AGCD01067816;GBDF01118991;XR_264571 MODEL 8845481 ncrna LOC102003659 uncharacterized LOC102003659 NW_004955420 14434101 14442240 + 102003659 AGCD01020946;GBDF01020272;XR_260715;XR_260716 MODEL 8876732 ncrna LOC102019806 uncharacterized LOC102019806 NW_004955419 693667 706979 - 102019806 AGCD01019604;AGCD01019605;AGCD01019606;GBDI01249903;XR_001233563;XR_260595 MODEL 8932072 protein-coding Gpr31 G protein-coupled receptor 31 ENCODES a protein that exhibits arachidonate binding (ortholog); bioactive lipid receptor activity (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog); negative regulation of inflammatory response (ortholog); positive regulation of immune response (ortholog); FOUND IN plasma membrane (ortholog) NW_004955439 14906304 14907574 + 102022965 AGCD01035993;XM_005390642 XP_005390699 MODEL 8732434 protein-coding Letmd1 LETM1 domain containing 1 ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN ATP biosynthetic process (ortholog); calcium ion homeostasis (ortholog); gene expression (ortholog); ASSOCIATED WITH breast cancer (ortholog); ovarian carcinoma (ortholog); renal carcinoma (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955547 1574210 1586432 + 102020847 AGCD01072233;GBDK01185833;XM_005411892;XM_013508469;XM_013508470;XM_013508471;XR_001232222;XR_001232223 XP_005411949;XP_013363923;XP_013363924;XP_013363925 MODEL 9065350 protein-coding LOC102022989 uncharacterized LOC102022989 NW_004955600 495492 516773 + 102022989 AGCD01076726;AGCD01076727;AGCD01076728;GBDF01249628;GBDF01249630;XM_005414808 XP_005414865 MODEL 10384250 ncrna LOC106149339 uncharacterized LOC106149339 NW_004955443 9073376 9075647 + 106149339 AGCD01038342;XR_001235466;XR_001235467 MODEL 10319765 ncrna LOC106147340 uncharacterized LOC106147340 NW_004955408 3840567 3854229 - 106147340 AGCD01008079;GBDF01178235;XR_001232190 MODEL 8784960 protein-coding LOC102006094 intestinal-type alkaline phosphatase-like NW_004955453 3530091 3533832 + 102006094 AGCD01044662;AGCD01044663;XM_005395706 XP_005395763 MODEL 8788052 pseudo LOC102022288 28S ribosomal protein S36, mitochondrial pseudogene NW_004955480 8492496 8493186 - 102022288 AGCD01056725 MODEL 8993397 protein-coding Tspan33 tetraspanin 33 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN pore complex assembly (ortholog); protein localization to plasma membrane (ortholog); protein maturation (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); plasma membrane (ortholog) NW_004955479 9920192 9941395 + 102007766 AGCD01056508;AGCD01056509;GBCQ01004646;XM_005402406;XM_005402407 XP_005402463;XP_005402464 MODEL 8981493 protein-coding Nek4 NIMA related kinase 4 ENCODES a protein that exhibits manganese ion binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN DNA damage response (ortholog); mitotic cell cycle (ortholog); positive regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH ciliopathy (ortholog); FOUND IN ciliary basal body (ortholog); ciliary plasm (ortholog); ciliary rootlet (ortholog) NW_004955430 2695674 2733204 - 102003046 AGCD01029176;AGCD01029177;AGCD01029178;AGCD01029179;AGCD01029180;GBCQ01129640;XM_013515588;XM_013515589 XP_013371042;XP_013371043 MODEL 10281388 protein-coding LOC106146769 zinc finger protein 266-like NW_004955495 854618 875183 - 106146769 AGCD01061657;GBCQ01177636;XM_013505079 XP_013360533 MODEL 8736686 protein-coding Spmip7 sperm microtubule inner protein 7 INVOLVED IN spermatogenesis (ortholog) NW_004955456 3845875 3885908 - 102005226 AGCD01046285;AGCD01046286;GBDK01163453;XM_005396622;XM_005396623 XP_005396679;XP_005396680 MODEL 10319503 ncrna LOC106147751 uncharacterized LOC106147751 NW_004955409 5541273 5562645 + 106147751 AGCD01009318;AGCD01009319;XR_001232684 MODEL 9013728 ncrna LOC102027801 uncharacterized LOC102027801 NW_004955402 48033011 48037703 + 102027801 AGCD01001196;AGCD01001197;XR_259099 MODEL 9024451 pseudo LOC102023981 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 pseudogene NW_004955408 23761578 23763478 - 102023981 AGCD01008590 MODEL 8917884 protein-coding LOC102028484 zinc finger protein 709-like NW_004955599 89145 126157 - 102028484 AGCD01076620;AGCD01076621;AGCD01076622;GBDF01017649;XM_005414745 XP_005414802 MODEL 8732752 protein-coding LOC102004691 leucine-rich repeat-containing protein 51 NW_004955414 19236475 19252002 - 102004691 AGCD01015308;GBBH01154964;XM_005380016;XM_005380017;XM_005380018;XM_013511820;XM_013511821;XM_013511822;XM_013511823 XP_005380073;XP_005380074;XP_005380075;XP_013367274;XP_013367275;XP_013367276;XP_013367277 MODEL 8844765 protein-coding LOC102007982 cytochrome P450 2D17-like NW_004955413 27521610 27655636 - 102007982 AGCD01014511;AGCD01014512;AGCD01014513;AGCD01014514;AGCD01014515;AGCD01014516;AGCD01014517;AGCD01014518;AGCD01014519;AGCD01014520;AGCD01014521;AGCD01014522;AGCD01014523;AGCD01014524;AGCD01014525;AGCD01014526;AGCD01014527;AGCD01014528;AGCD01014529;GBDI01255784;XM_013511457;XM_013511458;XM_013511459;XR_001232980 XP_013366911;XP_013366912;XP_013366913 MODEL 8982825 protein-coding Gatad1 GATA zinc finger domain containing 1 INVOLVED IN chromatin remodeling (ortholog); ASSOCIATED WITH dilated cardiomyopathy 2B (ortholog); Heimler syndrome 1 (ortholog); hypertrophic cardiomyopathy 2 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955432 9389020 9398791 + 102003477 AGCD01030905;GBCQ01006270;GBDF01053561;XM_013515936 XP_013371390 MODEL 8704248 protein-coding Ssbp2 single stranded DNA binding protein 2 ASSOCIATED WITH bipolar disorder (ortholog); prostate cancer (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955418 28562735 28813541 + 102005473 AGCD01019442;AGCD01019443;AGCD01019444;AGCD01019445;GBDF01111104;XM_013512973 XP_013368427 MODEL 8984664 pseudo LOC102012983 charged multivesicular body protein 3-like NW_004955427 345772 346720 + 102012983 AGCD01026828 MODEL 8780512 protein-coding Igsf9b immunoglobulin superfamily member 9B ENCODES a protein that exhibits kinase binding (ortholog); INVOLVED IN homophilic cell-cell adhesion (ortholog); positive regulation of inhibitory postsynaptic potential (ortholog); synaptic membrane adhesion (ortholog); FOUND IN dendrite (ortholog); GABA-ergic synapse (ortholog); inhibitory synapse (ortholog) NW_004955412 34712556 34828013 - 102027734 AGCD01013391;AGCD01013392;GBBH01149995;XM_005378583;XM_013511161;XM_013511162 XP_005378640;XP_013366615;XP_013366616 MODEL 8770878 protein-coding Bpifa1 BPI fold containing family A member 1 INVOLVED IN killing of cells of another organism; positive regulation of acute inflammatory response; surfactant homeostasis; ASSOCIATED WITH Inflammation; fetal alcohol spectrum disorder (ortholog); otitis media (ortholog); FOUND IN extracellular region; microvillus (ortholog) NW_004955422 28063077 28069939 - 102030434 AGCD01023343;FJ830605;GBBH01004310;NM_001282365;XM_013513811;XM_013513812;XM_013513813 ACZ02414;NP_001269294;XP_013369265;XP_013369266;XP_013369267 PROVISIONAL 8894977 protein-coding LOC102021582 secreted and transmembrane protein 1A-like NW_004955506 832244 843629 - 102021582 AGCD01065237;GBBH01073613;XM_005407502 XP_005407559 MODEL 8899223 protein-coding Lfng LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase ENCODES a protein that exhibits O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN compartment pattern specification (ortholog); marginal zone B cell differentiation (ortholog); negative regulation of Notch signaling pathway (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH genetic disease (ortholog); spondylocostal dysostosis 2 (ortholog); spondylocostal dysostosis 3 (ortholog) NW_004955460 12773975 12784512 - 102014752 AGCD01048664;GBCE01075163;XM_005397874 XP_005397931 MODEL 39131570 protein-coding PAQR9 progestin and adipoQ receptor family member 9 8962602 protein-coding LOC102009437 uncharacterized LOC102009437 NW_004955447 15549581 15578315 + 102009437 AGCD01041059;AGCD01041060;GBBH01122934;XM_013518483 XP_013373937 MODEL 8785575 protein-coding Phyhip phytanoyl-CoA 2-hydroxylase interacting protein ENCODES a protein that exhibits protein tyrosine kinase binding (ortholog); INVOLVED IN intracellular protein localization (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955403 45698936 45710921 - 102005095 AGCD01002826;GBDJ01298008;XM_005373653;XM_005373654;XM_013513793;XM_013513796;XM_013513800;XM_013513803 XP_005373710;XP_005373711;XP_013369247;XP_013369250;XP_013369254;XP_013369257 MODEL 10077028 protein-coding LOC106146770 uncharacterized LOC106146770 NW_004955407 39154810 39159879 + 106146770 AGCD01007822;GBCE01174942;XM_013505084;XM_013505091;XR_001231339;XR_001231340 XP_013360538;XP_013360545 MODEL 8877987 protein-coding LOC102013390 uncharacterized LOC102013390 NW_004955409 845678 869527 + 102013390 AGCD01009168;GBDI01372716;XM_005376615;XM_005376617;XM_005376619;XM_005376621;XM_013510467;XM_013510468;XM_013510469;XM_013510470;XM_013510471;XM_013510472;XR_001232685;XR_001232686;XR_001232687 XP_005376672;XP_005376674;XP_005376676;XP_005376678;XP_013365921;XP_013365922;XP_013365923;XP_013365924;XP_013365925;XP_013365926 MODEL 10360312 protein-coding LOC106150159 coiled-coil domain-containing protein 177-like NW_004955466 816300 819381 + 106150159 AGCD01050677;GBBH01083110;XM_013521968 XP_013377422 MODEL 10154710 protein-coding LOC106148822 translation initiation factor IF-2-like NW_004955429 20847861 20849323 + 106148822 AGCD01028991;GBBH01115719;GBDK01092939;XM_013515487 XP_013370941 MODEL 8768297 protein-coding Tyw2 tRNA wybutosine-synthesizing protein 2 NW_004955540 3121570 3124371 + 102007152 AGCD01071335;GBDJ01260504;XM_005410940 XP_005410997 MODEL 9016186 pseudo LOC102018255 ubiquitin-60S ribosomal protein L40 pseudogene NW_004955405 9748083 9748858 - 102018255 AGCD01004792 MODEL 8925343 ncrna LOC102003990 uncharacterized LOC102003990 NW_004955428 13288412 13293352 + 102003990 AGCD01027947;GBDF01181697;XR_001234443;XR_261302 MODEL 8746579 ncrna LOC102023984 uncharacterized LOC102023984 NW_004955460 5359468 5361667 + 102023984 AGCD01048450;GBDI01207938;XR_263031 MODEL 8956321 protein-coding Ewsr1 EWS RNA binding protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); Ewing sarcoma (ortholog); Neoplastic Processes (ortholog); FOUND IN Cajal body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955455 3571025 3599975 + 102030274 AGCD01045636;GBDF01002227;XM_005396190;XM_005396191;XM_005396193 XP_005396247;XP_005396248;XP_005396250 MODEL 8996562 protein-coding Gpr32 G protein-coupled receptor 32 ASSOCIATED WITH autism spectrum disorder (ortholog) NW_004955559 500852 501880 - 102016206 AGCD01073590;XM_005412970 XP_005413027 MODEL 10304100 protein-coding LOC106146622 uncharacterized LOC106146622 NW_004955407 33015555 33016060 - 106146622 AGCD01007694;GBDF01144186;XM_013504333 XP_013359787 MODEL 8835166 protein-coding Krtcap3 keratinocyte associated protein 3 ASSOCIATED WITH short-rib thoracic dysplasia 10 with or without polydactyly (ortholog) NW_004955469 9416732 9418523 + 102005460 AGCD01052503;GBDF01041820;XM_005400504 XP_005400561 MODEL 9019438 protein-coding Pla2g2d phospholipase A2 group IID ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); heparan sulfate proteoglycan binding (ortholog); heparin binding (ortholog); INVOLVED IN CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation (ortholog); negative regulation of T cell activation (ortholog); negative regulation of T cell proliferation (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; FOUND IN extracellular region (ortholog) NW_004955452 738133 743718 - 102016971 AGCD01043827;GBDI01339544;XM_005394674 XP_005394731 MODEL 8941105 protein-coding LOC102024691 cytochrome c oxidase subunit 8A, mitochondrial INVOLVED IN skeletal muscle tissue regeneration (ortholog); ASSOCIATED WITH mitochondrial complex IV deficiency nuclear type 1 (ortholog); mitochondrial complex IV deficiency nuclear type 15 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955422 21062061 21065655 - 102024691 AGCD01023099;GBCQ01008979;XM_005384654 XP_005384711 MODEL 10328905 protein-coding LOC106148143 translation initiation factor IF-2-like NW_004955416 14382587 14383235 + 106148143 AGCD01017257;GBBH01094426;GBCQ01125153;XM_013512509 XP_013367963 MODEL 10392401 ncrna LOC106146786 uncharacterized LOC106146786 NW_004955495 1641399 1648791 + 106146786 AGCD01061709;GBDF01208664;XR_001231349 MODEL 8702610 ncrna LOC102022290 uncharacterized LOC102022290 NW_004955418 7276604 7378661 + 102022290 AGCD01018886;AGCD01018887;AGCD01018888;AGCD01018889;AGCD01018890;GBDF01261954;XR_260543 MODEL 10137160 ncrna LOC106149340 uncharacterized LOC106149340 NW_004955405 22973700 23004668 - 106149340 AGCD01005115;AGCD01005116;GBDF01237352;XR_001235475 MODEL 8706583 protein-coding LOC102012203 dual specificity protein phosphatase 5-like NW_004955485 904628 909295 - 102012203 AGCD01058465;GBDK01430993;XM_005403917 XP_005403974 MODEL 10071987 ncrna LOC106149488 uncharacterized LOC106149488 NW_004955447 8860953 8878625 + 106149488 AGCD01040846;AGCD01040847;XR_001235710 MODEL 8958421 ncrna LOC102007549 uncharacterized LOC102007549 NW_004955480 6536847 6538193 - 102007549 AGCD01056685;GBDJ01269916;XR_263745 MODEL 8893797 protein-coding Nek5 NIMA related kinase 5 ENCODES a protein that exhibits protein kinase activity (ortholog); INVOLVED IN positive regulation of striated muscle cell differentiation (ortholog); FOUND IN cilium (ortholog); sperm flagellum (ortholog) NW_004955431 5312243 5378998 - 102014273 AGCD01030019;AGCD01030020;AGCD01030021;AGCD01030022;AGCD01030023;AGCD01030024;AGCD01030025;GBCE01094226;XM_013515764;XM_013515765;XM_013515766;XM_013515767;XM_013515768;XM_013515769;XM_013515770;XM_013515771 XP_013371218;XP_013371219;XP_013371220;XP_013371221;XP_013371222;XP_013371223;XP_013371224;XP_013371225 MODEL 9033762 protein-coding Lrrc29 Leucine-rich repeat-containing protein 29 ASSOCIATED WITH pneumoconiosis (ortholog) NW_004955484 9399034 9414493 + 102009060 AGCD01058415;GBDF01053368;XM_005403671;XM_005403674;XM_013503906;XM_013503908;XM_013503909;XM_013503910;XM_013503911;XM_013503912;XM_013503913 XP_005403728;XP_005403731;XP_013359360;XP_013359362;XP_013359363;XP_013359364;XP_013359365;XP_013359366;XP_013359367 MODEL 39131561 protein-coding SCO2 SCO cytochrome c oxidase assembly protein 2 8846747 protein-coding LOC102027803 melanoma-associated antigen B5-like NW_004955598 23956 27462 + 102027803 AGCD01076578;XM_005414741 XP_005414798 MODEL 8710208 ncrna LOC102025756 uncharacterized LOC102025756 NW_004955405 36781488 36788485 - 102025756 AGCD01005428;GBCQ01032855;XR_001235799 MODEL 8899355 protein-coding LOC102020835 zinc finger protein 14-like NW_004955524 1501075 1530183 - 102020835 AGCD01068755;GBDF01157491;XM_013507322;XM_013507323;XM_013507324 XP_013362776;XP_013362777;XP_013362778 MODEL 8941072 ncrna LOC102021946 uncharacterized LOC102021946 NW_004955461 13349769 13385164 - 102021946 AGCD01049036;AGCD01049037;GBDF01261825;XR_263085 MODEL 8945854 protein-coding Pard3 par-3 family cell polarity regulator ENCODES a protein that exhibits identical protein binding (ortholog); phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); phosphatidylinositol-3-phosphate binding (ortholog); INVOLVED IN apical constriction (ortholog); bicellular tight junction assembly (ortholog); centrosome localization (ortholog); PARTICIPATES IN protein kinase C (PKC) signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); neural tube defect (ortholog); primary ovarian insufficiency (ortholog); FOUND IN adherens junction (ortholog); anchoring junction (ortholog); apical junction complex (ortholog) NW_004955462 2930171 3457358 + 102020313 AGCD01049191;AGCD01049192;AGCD01049193;AGCD01049194;AGCD01049195;AGCD01049196;AGCD01049197;AGCD01049198;AGCD01049199;AGCD01049200;AGCD01049201;AGCD01049202;GBDJ01389442;XM_005398126;XM_013521382;XM_013521383;XM_013521384;XM_013521385;XM_013521386;XM_013521388;XM_013521389;XM_013521390;XM_013521391;XM_013521392;XM_013521393;XM_013521394;XM_013521395;XM_013521396;XM_013521397;XM_013521399;XM_013521400;XM_013521401;XM_013521402 XP_005398183;XP_013376836;XP_013376837;XP_013376838;XP_013376839;XP_013376840;XP_013376842;XP_013376843;XP_013376844;XP_013376845;XP_013376846;XP_013376847;XP_013376848;XP_013376849;XP_013376850;XP_013376851;XP_013376853;XP_013376854;XP_013376855;XP_013376856 MODEL 8828615 protein-coding Slc38a3 solute carrier family 38 member 3 ENCODES a protein that exhibits L-alanine transmembrane transporter activity (ortholog); L-asparagine transmembrane transporter activity (ortholog); L-asparagine, sodium:proton antiporter activity (ortholog); INVOLVED IN asparagine transmembrane transport (ortholog); asparagine transport (ortholog); cellular response to potassium ion starvation (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 102 (ortholog); Dwarfism (ortholog); Endotoxemia (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); membrane (ortholog) NW_004955532 2023694 2046556 + 102026468 AGCD01070209;AGCD01070210;AGCD01070211;GBCQ01114446;XM_005410248;XM_005410249 XP_005410305;XP_005410306 MODEL 8867124 protein-coding LOC102007986 tripartite motif-containing protein 5-like NW_004955414 21541749 21555056 - 102007986 AGCD01015423;GBCQ01013376;XM_005380093;XM_013512002;XM_013512004 XP_005380150;XP_013367456;XP_013367458 MODEL 8742145 pseudo LOC102012984 small acidic protein-like NW_004955428 6319241 6325753 + 102012984 AGCD01027734 MODEL 8930688 ncrna LOC102016374 uncharacterized LOC102016374 NW_004955473 5770425 5807446 + 102016374 AGCD01053983;AGCD01053984;XR_263582 MODEL 8997992 protein-coding Yju2 YJU2 splicing factor homolog FOUND IN nucleus (ortholog); spliceosomal complex (ortholog); U2-type catalytic step 1 spliceosome (ortholog) NW_004955495 4591242 4605403 - 102011131 AGCD01061935;AGCD01061936;GBDF01187806;XM_005405805;XM_005405806 XP_005405862;XP_005405863 MODEL 8936219 ncrna LOC102006097 uncharacterized LOC102006097 NW_004955456 4283151 4286706 - 102006097 AGCD01046296;GBDF01251661;XR_262881 MODEL 9034007 protein-coding Tmem170b transmembrane protein 170B INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); FOUND IN plasma membrane (ortholog) NW_004955465 2942165 2974082 - 102017967 AGCD01050364;AGCD01050365;GBBH01204493;GBCB01059818;XM_013521861 XP_013377315 MODEL 39133657 mirna MIR582 microRNA 582 8955205 protein-coding Spmip8 sperm microtubule inner protein 8 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); sperm flagellum (ortholog) NW_004955433 15551435 15558054 + 102009097 AGCD01031758;GBDF01082073;XM_005388429 XP_005388486 MODEL 10261096 ncrna LOC106147752 uncharacterized LOC106147752 NW_004955410 19661866 19691068 + 106147752 AGCD01011027;AGCD01011028;GBBH01219748;XR_001232693;XR_001232694 MODEL 8893694 protein-coding Lgals1 galectin 1 ENCODES a protein that exhibits carbohydrate binding (ortholog); identical protein binding (ortholog); lactose binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); cellular response to glucose stimulus (ortholog); maintenance of protein location (ortholog); ASSOCIATED WITH B-cell lymphoma (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955413 24072086 24075452 + 102008302 AGCD01014347;GBDJ01022968;XM_005379217;XM_005379218;XM_005379219;XM_005379220 XP_005379274;XP_005379275;XP_005379276;XP_005379277 MODEL 9001706 protein-coding Skic3 SKI3 subunit of superkiller complex INVOLVED IN nuclear-transcribed mRNA catabolic process (ortholog); nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay (ortholog); rescue of stalled cytosolic ribosome (ortholog); ASSOCIATED WITH genetic disease (ortholog); primary immunodeficiency disease (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); euchromatin (ortholog) NW_004955418 16989400 17068479 + 102016809 AGCD01019140;AGCD01019141;AGCD01019142;AGCD01019143;GBDF01158587;XM_005382246;XM_005382248 XP_005382303;XP_005382305 MODEL 8721022 pseudo LOC102009438 nucleobindin-2 pseudogene NW_004955580 212934 215509 + 102009438 AGCD01075591 MODEL 8897813 protein-coding LOC102003660 cytochrome P450 2J2-like NW_004955420 23534311 23545670 + 102003660 AGCD01021248;GBDJ01218648;XM_013513341 XP_013368795 MODEL 8735228 protein-coding LOC102019809 histone H2B type 1 NW_004955483 913696 923492 + 102019809 AGCD01057637;GBDF01211373;XM_005403305;XM_005403306 XP_005403362;XP_005403363 MODEL 8713647 pseudo LOC102022991 opioid growth factor receptor-like protein 1 pseudogene NW_004955897 13719 14864 - 102022991 AGCD01078610 MODEL 8920561 pseudo LOC102018266 suppressor of cytokine signaling 2 pseudogene NW_004955409 12562778 12566437 - 102018266 AGCD01009552 MODEL 9004178 ncrna LOC102023988 uncharacterized LOC102023988 NW_004955462 9458709 9460639 + 102023988 AGCD01049339;GBDF01126525;XR_263112 MODEL 8956351 protein-coding Ssbp3 single stranded DNA binding protein 3 ENCODES a protein that exhibits transcription coactivator activity (ortholog); INVOLVED IN head development (ortholog); head morphogenesis (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN protein-containing complex (ortholog); transcription regulator complex (ortholog) NW_004955464 4901150 5049341 + 102030505 AGCD01049997;AGCD01049998;GBCE01117941;GBCQ01040067;XM_005398528;XM_013521664 XP_005398585;XP_013377118 MODEL 8920667 pseudo LOC102021947 peptidyl-prolyl cis-trans isomerase A pseudogene NW_004955410 10055721 10056207 + 102021947 AGCD01010788 MODEL 8709530 protein-coding Tnp1 transition protein 1 ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN chromatin remodeling (ortholog); flagellated sperm motility (ortholog); heterochromatin formation (ortholog); FOUND IN male germ cell nucleus (ortholog); nucleosome (ortholog); nucleus (ortholog) NW_004955453 16387897 16388513 + 102021623 AGCD01044902;GBDF01007631;XM_005395680 XP_005395737 MODEL 8799876 protein-coding Gpr33 G protein-coupled receptor 33 ASSOCIATED WITH Epidermolysis Bullosa Simplex 5D with Nail Dystrophy (ortholog) NW_004955409 29124200 29130823 + 102010876 AGCD01010253;GBBH01175297;XM_005376955 XP_005377012 MODEL 8749377 protein-coding Ihh Indian hedgehog signaling molecule ENCODES a protein that exhibits calcium ion binding (ortholog); morphogen activity (ortholog); patched binding (ortholog); INVOLVED IN bone resorption (ortholog); branching involved in blood vessel morphogenesis (ortholog); camera-type eye development (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH acrocapitofemoral dysplasia (ortholog); annular pancreas (ortholog); autism spectrum disorder (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955453 14376665 14382536 + 102024084 AGCD01044864;GBCQ01087658;XM_005395596 XP_005395653 MODEL 9012274 pseudo LOC102029556 manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like NW_004955437 5260406 5270500 + 102029556 AGCD01034382 MODEL 8891171 protein-coding Bpifa3 BPI fold containing family A member 3 NW_004955422 28076137 28087162 - 102003034 AGCD01023343;GBDF01046147;XM_005384851 XP_005384908 MODEL 8889988 protein-coding Krtdap keratinocyte differentiation associated protein INVOLVED IN epidermis development (ortholog); FOUND IN extracellular region (ortholog); lamellar body (ortholog) NW_004955468 4713332 4716212 - 102019049 AGCD01051919;GBDI01000520;XM_005400053 XP_005400110 MODEL 10238128 ncrna LOC106148144 uncharacterized LOC106148144 NW_004955416 14487661 14489983 - 106148144 AGCD01017271;GBCB01073897;XR_001233317 MODEL 8845261 protein-coding LOC102022294 eukaryotic translation initiation factor 4B-like NW_004955483 1130768 1143285 - 102022294 AGCD01057644;GBDJ01001048;XM_005403314;XM_005403316;XM_013503771 XP_005403371;XP_005403373;XP_013359225 MODEL 8885401 protein-coding LOC102004692 olfactory receptor 51I1 NW_004955414 21341220 21342158 - 102004692 AGCD01015415;XM_005380084 XP_005380141 MODEL 10060522 protein-coding LOC106146771 olfactory receptor 7D4-like NW_004955495 494023 494877 - 106146771 AGCD01061632;XM_013505085 XP_013360539 MODEL 8802130 protein-coding Phyhipl phytanoyl-CoA 2-hydroxylase interacting protein like FOUND IN cytoplasm (ortholog) NW_004955425 12841027 12885260 + 102012777 AGCD01025523;GBDF01003440;XM_005385926 XP_005385983 MODEL 10327032 pseudo LOC106148823 60S ribosomal protein L21 pseudogene NW_004955429 15719483 15721712 + 106148823 AGCD01028817 MODEL 10320425 ncrna LOC106147341 uncharacterized LOC106147341 NW_004955408 3803692 3814521 + 106147341 AGCD01008077;AGCD01008078;AGCD01008079;GBCQ01013053;XR_001232191 MODEL 9031922 protein-coding LOC102020837 ubiquitin-conjugating enzyme E2 D2-like NW_004955525 2253543 2264996 + 102020837 AGCD01069082;AGCD01069083;AGCD01069084;GBDF01048297;XM_005409733;XM_013507345;XM_013507346 XP_005409790;XP_013362799;XP_013362800 MODEL 8897190 protein-coding Gatad2a GATA zinc finger domain containing 2A ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN anterior neuropore closure (ortholog); blood vessel development (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; ASSOCIATED WITH Genetic Predisposition to Disease (ortholog); Neurodevelopmental Disorders (ortholog); Stomach Neoplasms (ortholog); FOUND IN chromosome (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955524 2439594 2506539 - 102012356 AGCD01068818;GBCE01076477;XM_005409631;XM_005409632;XM_005409634;XM_005409636;XM_013507292;XM_013507293;XM_013507294;XM_013507295 XP_005409688;XP_005409689;XP_005409691;XP_005409693;XP_013362746;XP_013362747;XP_013362748;XP_013362749 MODEL 8910135 protein-coding Lgals12 galectin 12 ENCODES a protein that exhibits lactose binding (ortholog); INVOLVED IN intrinsic apoptotic signaling pathway (ortholog); FOUND IN mitochondrion (ortholog); nucleus (ortholog) NW_004955599 248058 261697 + 102029251 AGCD01076636;GBDF01085127;XM_005414746;XM_013510064;XM_013510066;XM_013510067;XM_013510068 XP_005414803;XP_013365518;XP_013365520;XP_013365521;XP_013365522 MODEL 8833633 protein-coding Tspan4 tetraspanin 4 ENCODES a protein that exhibits antigen binding (ortholog); integrin binding (ortholog); INVOLVED IN mitocytosis (ortholog); protein-containing complex assembly (ortholog); regulation of mitochondrial membrane potential (ortholog); FOUND IN migrasome (ortholog); plasma membrane (ortholog); vesicle (ortholog) NW_004955476 11277881 11291008 - 102007656 AGCD01055446;AGCD01055447;GBDK01000814;XM_005401804;XM_005401805;XM_013502958 XP_005401861;XP_005401862;XP_013358412 MODEL 10221254 ncrna LOC106146623 uncharacterized LOC106146623 NW_004955487 2807714 2814899 - 106146623 AGCD01059269;GBDF01111048;XR_001231150 MODEL 8854453 pseudo LOC102007993 28S ribosomal protein S36, mitochondrial pseudogene NW_004955474 11143140 11143451 - 102007993 AGCD01054611;XM_005401469 MODEL 9023745 pseudo LOC102022996 calreticulin pseudogene NW_004955404 25701933 25702878 + 102022996 AGCD01003861 MODEL 8715523 ncrna LOC102012988 uncharacterized LOC102012988 NW_004955429 20903019 20922730 - 102012988 AGCD01028992;GBDF01263063;XR_261369 MODEL 8781257 protein-coding Ssbp4 single stranded DNA binding protein 4 NW_004955524 3101935 3109178 - 102010194 AGCD01068856;AGCD01068857;GBBH01030747;GBDK01006965;XM_005409701 XP_005409758 MODEL 8892923 protein-coding Tnp2 transition protein 2 ENCODES a protein that exhibits zinc ion binding (ortholog); INVOLVED IN acrosome reaction (ortholog); binding of sperm to zona pellucida (ortholog); flagellated sperm motility (ortholog); FOUND IN chromosome (ortholog); nucleosome (ortholog); nucleus (ortholog) NW_004955442 7311826 7314046 + 102005850 AGCD01037623;GBDK01130457;XM_013517647 XP_013373101 MODEL 10388094 ncrna LOC106149489 uncharacterized LOC106149489 NW_004955447 3082109 3105103 + 106149489 AGCD01040574;GBBH01209964;XR_001235712;XR_001235713;XR_001235714;XR_001235715 MODEL 8776268 protein-coding Tmem171 transmembrane protein 171 NW_004955425 27457245 27466484 - 102008644 AGCD01025971;AGCD01025972;GBDI01311032;XM_005386075 XP_005386132 MODEL 8703074 protein-coding Spmip9 sperm microtubule inner protein 9 INVOLVED IN flagellated sperm motility (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955424 296514 305141 - 102011332 AGCD01024170;AGCD01024171;GBDF01007131;XM_005385378;XM_005385379;XM_013514595;XM_013514596 XP_005385435;XP_005385436;XP_013370049;XP_013370050 MODEL 8950406 protein-coding Lrrc3 leucine rich repeat containing 3 NW_004955407 41053671 41056103 - 102025324 AGCD01007854;GBDF01287458;XM_005375859 XP_005375916 MODEL 8905425 pseudo LOC102027804 ankyrin repeat domain-containing protein 49-like NW_004955605 434316 440248 - 102027804 AGCD01076946 MODEL 8868342 protein-coding Nek6 NIMA related kinase 6 ENCODES a protein that exhibits ATP binding (ortholog); DNA-binding transcription factor binding (ortholog); kinesin binding (ortholog); INVOLVED IN chromosome segregation (ortholog); peptidyl-serine phosphorylation (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN centriolar satellite (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955419 3762643 3833000 - 102025246 AGCD01019733;AGCD01019734;AGCD01019735;GBDI01216126;XM_005382497;XM_013513237;XM_013513239 XP_005382554;XP_013368691;XP_013368693 MODEL 8951915 ncrna LOC102025757 uncharacterized LOC102025757 NW_004955453 272764 282506 - 102025757 AGCD01044589;GBDF01286203;XR_001236189 MODEL 8880931 protein-coding Bpifb1 BPI fold containing family B member 1 INVOLVED IN innate immune response in mucosa (ortholog); negative regulation of toll-like receptor 4 signaling pathway (ortholog); FOUND IN extracellular region (ortholog) NW_004955422 27955298 27976051 - 102029304 AGCD01023340;GBDI01017648;XM_005384845;XM_005384846 XP_005384902;XP_005384903 MODEL 10212720 protein-coding Haus8 HAUS augmin like complex subunit 8 INVOLVED IN centrosome cycle (ortholog); spindle assembly (ortholog); FOUND IN centrosome (ortholog); HAUS complex (ortholog); mitotic spindle microtubule (ortholog) NW_004955524 1042643 1042951 + 106147175 AGCD01068733;GBDF01088568;GBDJ01352200;XM_013507279 XP_013362733 MODEL 8864597 protein-coding LOC102003661 starch-binding domain-containing protein 1-like NW_004955421 9799138 9801408 - 102003661 AGCD01021858;XM_013513646 XP_013369100 MODEL 8814490 protein-coding Efcab2 EF-hand calcium binding domain 2 ENCODES a protein that exhibits calcium ion binding (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN sperm principal piece (ortholog) NW_004955406 8115813 8239352 + 102017303 AGCD01005792;AGCD01005793;AGCD01005794;AGCD01005795;AGCD01005796;AGCD01005797;AGCD01005798;AGCD01005799;AGCD01005800;AGCD01005801;GBBH01131572;GBCE01162934;XM_013520411 XP_013375865 MODEL 8977234 pseudo LOC102024693 28S ribosomal protein S7, mitochondrial pseudogene NW_004955422 16149376 16153022 + 102024693 AGCD01022891 MODEL 8856386 protein-coding Pard3b par-3 family cell polarity regulator beta ASSOCIATED WITH autism spectrum disorder (ortholog); Neurodevelopmental Disorders (ortholog); schizophrenia (ortholog); FOUND IN cell junction (ortholog); protein-containing complex (ortholog) NW_004955457 9367942 10232855 - 102020423 AGCD01046935;AGCD01046936;AGCD01046937;AGCD01046938;AGCD01046939;AGCD01046940;AGCD01046941;AGCD01046942;AGCD01046943;AGCD01046944;AGCD01046945;AGCD01046946;AGCD01046947;AGCD01046948;AGCD01046949;AGCD01046950;AGCD01046951;AGCD01046952;GBBH01082356;XM_013520665 XP_013376119 MODEL 8820525 pseudo LOC102017124 histone H3.3-like NW_004955416 21843586 21844067 - 102017124 AGCD01017517 MODEL 10305012 ncrna LOC106146787 uncharacterized LOC106146787 NW_004955495 2109244 2113595 - 106146787 AGCD01061747;XR_001231350 MODEL 9022089 protein-coding Pla2g2e phospholipase A2 group IIE ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); calcium ion binding (ortholog); INVOLVED IN low-density lipoprotein particle remodeling (ortholog); phosphatidylcholine metabolic process (ortholog); phosphatidylglycerol metabolic process (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog) NW_004955452 522314 526095 - 102014971 AGCD01043815;XM_005394667 XP_005394724 MODEL 8832321 pseudo LOC102013392 ribosomal L1 domain-containing protein 1 pseudogene NW_004955409 26666765 26667942 - 102013392 AGCD01010196 MODEL 10178950 ncrna LOC106149341 uncharacterized LOC106149341 NW_004955443 19244257 19253677 - 106149341 AGCD01038622;GBDF01049821;XR_001235477 MODEL 8833028 ncrna LOC102012206 uncharacterized LOC102012206 NW_004955421 24912739 24916609 - 102012206 AGCD01022223;XR_260826 MODEL 10108218 ncrna LOC106150160 uncharacterized LOC106150160 NW_004955466 704973 710166 + 106150160 AGCD01050673;XR_001236807 MODEL 10296618 ncrna LOC106147753 uncharacterized LOC106147753 NW_004955410 21995580 22002060 + 106147753 AGCD01011066;GBCE01147785;XR_001232695 MODEL 8893304 pseudo LOC102022999 U1 small nuclear ribonucleoprotein C pseudogene NW_004955454 3602309 3602766 - 102022999 AGCD01045094 MODEL 8929534 protein-coding LOC102017127 histone H2B type 1 NW_004955483 851209 851809 - 102017127 AGCD01057634;XM_005403297 XP_005403354 MODEL 10379226 protein-coding Sco2 synthesis of cytochrome C oxidase 2 ENCODES a protein that exhibits protein-disulfide reductase activity (ortholog); INVOLVED IN copper ion homeostasis (ortholog); eye development (ortholog); in utero embryonic development (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); cytochrome-c oxidase deficiency disease (ortholog); Human Influenza (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); myofibril (ortholog) NW_004955413 33503882 33505417 - 106146232 AGCD01014673;GBCB01076355;XM_005379585;XM_005379587 XP_005379642;XP_005379644 MODEL 8723078 protein-coding Tyw3 tRNA-yW synthesizing protein 3 homolog NW_004955423 17932008 17952681 - 102027656 AGCD01023865;AGCD01023866;GBCQ01176880;XM_005385234;XM_005385235;XM_013514508 XP_005385291;XP_005385292;XP_013369962 MODEL 8888937 ncrna LOC102013393 uncharacterized LOC102013393 NW_004955410 13697777 13709802 - 102013393 AGCD01010893;GBDF01251247;XR_259838 MODEL 8806460 ncrna LOC102009439 uncharacterized LOC102009439 NW_004955448 13394879 13451616 + 102009439 AGCD01041588;AGCD01041589;AGCD01041590;AGCD01041591;GBDK01000836;XR_262470 MODEL 10326762 protein-coding LOC106146772 olfactory receptor 7G2-like NW_004955495 397197 398163 + 106146772 AGCD01061626;XM_013505089 XP_013360543 MODEL 9001900 protein-coding LOC102021585 olfactory receptor 5AL1-like NW_004955511 1558626 1559570 + 102021585 AGCD01066371;XM_005408236 XP_005408293 MODEL 8918307 protein-coding Ssc4d scavenger receptor cysteine rich family member with 4 domains NW_004955456 14993250 15005664 - 102014535 AGCD01046659;AGCD01046660;AGCD01046661;GBDK01306473;XM_005396898 XP_005396955 MODEL 9031260 pseudo LOC102016375 39S ribosomal protein L20, mitochondrial-like NW_004955415 7808215 7808842 + 102016375 AGCD01016058 MODEL 8700733 protein-coding LOC102022645 25-hydroxycholesterol 7-alpha-hydroxylase ENCODES a protein that exhibits 25-hydroxycholesterol 7-alpha-hydroxylase activity (ortholog); INVOLVED IN B cell chemotaxis (ortholog); bile acid biosynthetic process (ortholog); circadian rhythm (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH adenocarcinoma (ortholog); cholestasis (ortholog); congenital bile acid synthesis defect (ortholog) NW_004955444 14274818 14446068 + 102022645 AGCD01039118;AGCD01039119;AGCD01039120;AGCD01039121;AGCD01039122;GBBH01005355;GBCQ01011879;XM_013518189 XP_013373643 MODEL 8728733 ncrna LOC102006098 uncharacterized LOC102006098 NW_004955456 14622794 14651850 - 102006098 AGCD01046645;AGCD01046646;GBDF01252370;XR_001236327;XR_001236328;XR_001236329;XR_001236330;XR_262904;XR_262905 MODEL 9014824 protein-coding Havcr1 hepatitis A virus cellular receptor 1 ENCODES a protein that exhibits phosphatidylserine binding (ortholog); virus receptor activity (ortholog); INVOLVED IN apoptotic cell clearance (ortholog); phagocytosis, engulfment (ortholog); positive regulation of mast cell activation (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); acute kidney tubular necrosis (ortholog); Albuminuria (ortholog); FOUND IN apical plasma membrane (ortholog); brush border (ortholog); cell surface (ortholog) NW_004955408 11047679 11070492 - 102019779 AGCD01008287;AGCD01008288;GBDF01288090;XM_005376581 XP_005376638 MODEL 8892403 pseudo LOC102020854 activated RNA polymerase II transcriptional coactivator p15 pseudogene NW_004955445 1123002 1125675 + 102020854 AGCD01039329;XR_262358 MODEL 8813836 ncrna LOC102021950 uncharacterized LOC102021950 NW_004955464 6997967 7031483 + 102021950 AGCD01050051;AGCD01050052;AGCD01050053;GBDJ01111080;XR_001236684;XR_001236685;XR_263208 MODEL 10089830 ncrna LOC106146624 uncharacterized LOC106146624 NW_004955487 7582271 7585956 - 106146624 AGCD01059403;GBDF01146340;XR_001231151 MODEL 8766851 protein-coding Iho1 interactor of HORMAD1 1 INVOLVED IN homologous chromosome pairing at meiosis (ortholog); meiotic DNA double-strand break formation (ortholog); oogenesis (ortholog); FOUND IN condensed nuclear chromosome (ortholog) NW_004955532 1198316 1226875 + 102007590 AGCD01070171;AGCD01070172;AGCD01070173;GBDF01126604;GBDF01126605;XM_013507565 XP_013363019 MODEL 39131582 mirna MIR590 microRNA 590 8920298 ncrna LOC102008005 uncharacterized LOC102008005 NW_004955494 6144787 6169872 + 102008005 AGCD01061530;GBDF01223353;XR_001231296;XR_264116 MODEL 8701340 protein-coding Tspan5 tetraspanin 5 ENCODES a protein that exhibits enzyme binding (ortholog); INVOLVED IN positive regulation of Notch signaling pathway (ortholog); protein localization to plasma membrane (ortholog); protein maturation (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955405 8725761 8759784 - 102020520 AGCD01004751;GBCQ01094713;GBDF01221548;XM_013517460 XP_013372914 MODEL 8779821 ncrna LOC102029558 uncharacterized LOC102029558 NW_004955440 15747580 15776294 + 102029558 AGCD01036497;AGCD01036498;GBDK01383133;XR_001235230;XR_262023;XR_262024 MODEL 8927881 protein-coding LOC102003991 olfactory receptor 10W1-like NW_004955511 3029816 3030835 + 102003991 AGCD01066439;GBDF01060938;XM_005408259 XP_005408316 MODEL 10167167 ncrna LOC106148415 uncharacterized LOC106148415 NW_004955421 23007656 23019419 + 106148415 AGCD01022166;GBDJ01247236;XR_001233838 MODEL 8876766 protein-coding LOC102022296 cocaine esterase-like NW_004955484 9769745 9781227 - 102022296 AGCD01058429;AGCD01058430;GBDF01020524;XM_013503865 XP_013359319 MODEL 10071283 ncrna LOC106147754 uncharacterized LOC106147754 NW_004955410 2530134 2543081 - 106147754 AGCD01010631;AGCD01010632;GBDF01194378;XR_001232697 MODEL 9054197 protein-coding Tmem174 transmembrane protein 174 INVOLVED IN phosphate ion homeostasis (ortholog); FOUND IN apical plasma membrane (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955425 27402376 27404414 - 102008332 AGCD01025969;GBCQ01008897;XM_005386074 XP_005386131 MODEL 8703353 protein-coding LOC102023989 ubiquitin-conjugating enzyme E2 variant 2-like NW_004955462 10852436 10854575 + 102023989 AGCD01049373;XM_005398313 XP_005398370 MODEL 10318026 ncrna LOC106147342 uncharacterized LOC106147342 NW_004955545 1443962 1452337 + 106147342 AGCD01071855;GBDF01235722;XR_001232192 MODEL 8920133 protein-coding LOC102027805 kynurenine/alpha-aminoadipate aminotransferase, mitochondrial-like NW_004955403 36263559 36366544 + 102027805 AGCD01002535;AGCD01002536;AGCD01002537;XM_005373545;XM_013513326;XM_013513331 XP_005373602;XP_013368780;XP_013368785 MODEL 8914525 protein-coding Yju2b YJU2 splicing factor homolog B INVOLVED IN response to virus (ortholog) NW_004955415 32560182 32584747 + 102003761 AGCD01016726;GBDF01089311;XM_005381059;XM_005381060;XM_005381063 XP_005381116;XP_005381117;XP_005381120 MODEL 9050268 protein-coding Bpifb2 BPI fold containing family B member 2 NW_004955422 28233236 28251627 - 102004722 AGCD01023345;GBBH01228047;XM_005384855;XM_013513871;XM_013513872;XM_013513873;XM_013513874 XP_005384912;XP_013369325;XP_013369326;XP_013369327;XP_013369328 MODEL 8921678 pseudo LOC102007550 thioredoxin pseudogene NW_004955417 25525969 25526425 + 102007550 AGCD01018486 MODEL 9009932 protein-coding Gatad2b GATA zinc finger domain containing 2B INVOLVED IN chromatin remodeling (ortholog); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); GAND syndrome (ortholog); genetic disease (ortholog); FOUND IN chromosome (ortholog); chromosome, telomeric region (ortholog); nuclear speck (ortholog) NW_004955545 424997 519031 - 102021177 AGCD01071793;AGCD01071794;AGCD01071795;AGCD01071796;AGCD01071797;AGCD01071798;GBDI01293510;XM_005411445;XM_005411446;XM_005411447;XM_005411448;XM_013508226;XM_013508227 XP_005411502;XP_005411503;XP_005411504;XP_005411505;XP_013363680;XP_013363681 MODEL 8992088 protein-coding Gpr34 G protein-coupled receptor 34 ASSOCIATED WITH ovarian cyst (ortholog); FOUND IN plasma membrane (ortholog) NW_004955565 1096853 1103610 - 102026682 AGCD01074303;GBBH01036945;XM_005413246;XM_005413247 XP_005413303;XP_005413304 MODEL 8976934 protein-coding Ksr1 kinase suppressor of ras 1 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); ATP binding (ortholog); Hsp90 protein binding (ortholog); INVOLVED IN positive regulation of MAPK cascade (ortholog); Ras protein signal transduction (ortholog); regulation of cell population proliferation (ortholog); PARTICIPATES IN ceramide signaling pathway; platelet-derived growth factor signaling pathway; the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH breast adenocarcinoma (ortholog); breast cancer (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955481 5768166 5913557 - 102013414 AGCD01057003;AGCD01057004;AGCD01057005;GBCE01188097;XM_005402782;XM_005402783;XM_005402784;XM_005402785;XM_005402786;XM_005402787;XM_005402788;XM_005402789 XP_005402839;XP_005402840;XP_005402841;XP_005402842;XP_005402843;XP_005402844;XP_005402845;XP_005402846 MODEL 10316192 protein-coding LOC106149490 phosphatidylinositol 4,5-bisphosphate 5-phosphatase A-like NW_004955447 16605581 16613142 + 106149490 AGCD01041092;AGCD01041093;AGCD01041094;GBCE01183189;GBDJ01404245;XM_013518490 XP_013373944 MODEL 8948396 pseudo LOC102019812 heterogeneous nuclear ribonucleoprotein A3 pseudogene NW_004955419 17724461 17726292 - 102019812 AGCD01020163 MODEL 10202676 ncrna LOC106150161 uncharacterized LOC106150161 NW_004955466 751998 759518 + 106150161 AGCD01050673;XR_001236808 MODEL 10121491 ncrna LOC106150307 uncharacterized LOC106150307 NW_004955471 10721212 10724134 - 106150307 AGCD01053234;GBDF01112970;XR_001237042 MODEL 8721051 protein-coding Tnpo1 transportin 1 INVOLVED IN protein import into nucleus (ortholog); FOUND IN cytosol (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955425 27666091 27748920 - 102009966 AGCD01025978;AGCD01025979;AGCD01025980;AGCD01025981;AGCD01025982;GBCB01061676;XM_005386079;XM_005386080;XM_005386081;XM_005386082;XM_013514849 XP_005386136;XP_005386137;XP_005386138;XP_005386139;XP_013370303 MODEL 8983144 pseudo LOC102017129 arylacetamide deacetylase-like 4 NW_004955486 847089 892899 - 102017129 AGCD01058896;AGCD01058897;AGCD01058898;AGCD01058899;AGCD01058900;AGCD01058901;AGCD01058902;AGCD01058903;AGCD01058904 MODEL 10308249 ncrna LOC106148824 uncharacterized LOC106148824 NW_004955429 4249866 4277004 - 106148824 AGCD01028484;AGCD01028485;AGCD01028486;GBDJ01033878;XR_001234523 MODEL 8769405 pseudo LOC102025758 selenide, water dikinase 2-like NW_004955405 25839106 25864009 + 102025758 AGCD01005186;AGCD01005187;AGCD01005188 MODEL 10368625 protein-coding LOC106146773 olfactory receptor 7E24-like NW_004955495 719278 720201 + 106146773 AGCD01061650;XM_013505094 XP_013360548 MODEL 8817020 protein-coding Nek7 NIMA related kinase 7 ENCODES a protein that exhibits molecular function activator activity (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cellular response to potassium ion (ortholog); positive regulation of NLRP3 inflammasome complex assembly (ortholog); positive regulation of telomere maintenance (ortholog); ASSOCIATED WITH Weight Gain (ortholog); FOUND IN cytoplasm (ortholog); microtubule organizing center (ortholog); nucleoplasm (ortholog) NW_004955406 34575292 34714024 + 102028715 AGCD01006508;AGCD01006509;AGCD01006510;GBBH01090871;GBCB01021956;XM_005375133 XP_005375190 MODEL 8814186 protein-coding Lgals2 galectin 2 ENCODES a protein that exhibits galactoside binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); positive regulation of apoptotic process (ortholog); positive regulation of inflammatory response (ortholog); PARTICIPATES IN myocardial infarction pathway; ASSOCIATED WITH Coronary Disease (ortholog); Experimental Liver Cirrhosis (ortholog); myocardial infarction (ortholog); FOUND IN galectin complex (ortholog) NW_004955413 23988193 24001868 - 102005920 AGCD01014344;GBBH01127271;XM_005379208;XM_005379209 XP_005379265;XP_005379266 MODEL 8756845 ncrna LOC102012991 uncharacterized LOC102012991 NW_004955431 707760 745153 - 102012991 AGCD01029876;AGCD01029877;AGCD01029878;GBDF01223749;XR_261438;XR_261439 MODEL 8899441 protein-coding LOC102022646 CD209 antigen-like protein E NW_004955563 1483949 1487028 + 102022646 AGCD01074149;GBDI01067391;XM_005413153;XM_013509121 XP_005413210;XP_013364575 MODEL 10239072 ncrna LOC106149342 uncharacterized LOC106149342 NW_004955443 19273341 19305834 - 106149342 AGCD01038622;AGCD01038623;AGCD01038624;GBDI01307809;XR_001235478;XR_001235479 MODEL 9001903 pseudo LOC102021951 39S ribosomal protein L47, mitochondrial pseudogene NW_004955464 13716913 13717742 + 102021951 AGCD01050291 MODEL 8837012 protein-coding LOC102020855 neutrophil gelatinase-associated lipocalin-like NW_004955570 431413 435267 + 102020855 AGCD01074725;GBDK01101143;XM_013509401 XP_013364855 MODEL 8860824 protein-coding Slc38a4 solute carrier family 38 member 4 ENCODES a protein that exhibits alanine:sodium symporter activity (ortholog); amino acid transmembrane transporter activity (ortholog); amino acid:sodium symporter activity (ortholog); INVOLVED IN L-alanine import across plasma membrane (ortholog); L-alanine transmembrane transport (ortholog); L-arginine transmembrane transport (ortholog); PARTICIPATES IN amiloride pharmacodynamics pathway; bendroflumethiazide pharmacodynamics pathway; bumetanide pharmacodynamics pathway; FOUND IN microvillus membrane (ortholog); plasma membrane (ortholog) NW_004955500 5859566 5925084 - 102012776 AGCD01063858;AGCD01063859;AGCD01063860;AGCD01063861;GBCB01056315;XM_005406599;XM_005406600;XM_005406601;XM_013505723 XP_005406656;XP_005406657;XP_005406658;XP_013361177 MODEL 9026733 protein-coding Ik IK cytokine ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN mitotic cell cycle (ortholog); mitotic spindle assembly checkpoint signaling (ortholog); mRNA splicing, via spliceosome (ortholog); FOUND IN chromosome (ortholog); mitotic spindle pole (ortholog); nuclear chromosome (ortholog) NW_004955418 39695 52862 - 102028750 AGCD01018664;AGCD01018665;GBBH01033048;XM_005382016 XP_005382073 MODEL 9020772 pseudo LOC102013402 DNA-directed RNA polymerase III subunit RPC7 pseudogene NW_004955413 383694 386168 - 102013402 AGCD01013462 MODEL 8861449 protein-coding Tyw5 tRNA-yW synthesizing protein 5 ENCODES a protein that exhibits iron ion binding (ortholog); protein homodimerization activity (ortholog); tRNA binding (ortholog); INVOLVED IN wybutosine biosynthetic process (ortholog) NW_004955403 1326027 1351039 + 102008280 AGCD01001717;GBDF01248752;XM_005373255;XM_013511941 XP_005373312;XP_013367395 MODEL 8928418 protein-coding LOC102003664 apoptosis-associated speck-like protein containing a CARD NW_004955493 8053687 8055442 - 102003664 AGCD01061257;GBDF01238687;XM_005405309 XP_005405366 MODEL 8984930 protein-coding LOC102021588 mitochondrial amidoxime-reducing component 1 NW_004955520 2979516 3001945 - 102021588 AGCD01068087;GBCB01018209;XM_005409265 XP_005409322 MODEL 8962611 protein-coding LOC102009441 zinc finger protein 211 NW_004955584 469784 476250 + 102009441 AGCD01075942;GBDK01431604;XM_005414361;XM_005414362;XM_005414363;XM_005414365 XP_005414418;XP_005414419;XP_005414420;XP_005414422 MODEL 8785417 pseudo LOC102024697 eukaryotic translation initiation factor 3 subunit K pseudogene NW_004955495 6153969 6155389 - 102024697 AGCD01062055 MODEL 10297803 ncrna LOC106146788 uncharacterized LOC106146788 NW_004955407 39568573 39575463 - 106146788 AGCD01007830;XR_001231351 MODEL 10233283 ncrna LOC106147343 uncharacterized LOC106147343 NW_004955545 1341234 1349108 + 106147343 AGCD01071850;GBDJ01058943;XR_001232198 MODEL 8724363 protein-coding Pard6a par-6 family cell polarity regulator alpha ENCODES a protein that exhibits GTP-dependent protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN cell-cell junction maintenance (ortholog); centrosome cycle (ortholog); establishment or maintenance of epithelial cell apical/basal polarity (ortholog); PARTICIPATES IN adenosine signaling pathway; insulin signaling pathway; protein kinase C (PKC) signaling pathway; FOUND IN axonal growth cone (ortholog); bicellular tight junction (ortholog); cell cortex (ortholog) NW_004955484 9019929 9022561 - 102026221 AGCD01058403;GBDJ01094443;XM_005403633;XM_005403634;XM_013503955 XP_005403690;XP_005403691;XP_013359409 MODEL 8876928 protein-coding LOC102004693 olfactory receptor 6 NW_004955414 22664983 22665967 - 102004693 AGCD01015469;GBBH01083993;XM_013511766 XP_013367220 MODEL 9064714 protein-coding Pla2g2f phospholipase A2 group IIF ENCODES a protein that exhibits A2-type glycerophospholipase activity (ortholog); INVOLVED IN arachidonate metabolic process (ortholog); negative regulation of T cell proliferation (ortholog); phosphatidylcholine acyl-chain remodeling (ortholog) NW_004955452 755738 765304 + 102017295 AGCD01043827;GBDF01118116;XM_005394676;XM_013519448 XP_005394733;XP_013374902 MODEL 8799895 protein-coding Havcr2 hepatitis A virus cellular receptor 2 ENCODES a protein that exhibits transmembrane signaling receptor activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); defense response to Gram-positive bacterium (ortholog); macrophage activation involved in immune response (ortholog); ASSOCIATED WITH asthma (ortholog); cystic fibrosis (ortholog); Eczema (ortholog); FOUND IN anchoring junction (ortholog); cell surface (ortholog); early endosome (ortholog) NW_004955408 11289920 11311216 - 102011629 AGCD01008306;GBCE01034226;XM_005376221;XM_005376222 XP_005376278;XP_005376279 MODEL 8748193 pseudo LOC102007552 60S ribosomal protein L17 pseudogene NW_004955419 5413575 5414083 - 102007552 AGCD01019806 MODEL 39133704 mirna MIR592 microRNA 592 8990353 pseudo LOC102023010 iron-sulfur cluster assembly 1 homolog, mitochondrial pseudogene NW_004955409 23655947 23657129 + 102023010 AGCD01010069 MODEL 9030206 protein-coding Lgals3 galectin 3 ENCODES a protein that exhibits advanced glycation end-product receptor activity (ortholog); carbohydrate binding (ortholog); chemoattractant activity (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); eosinophil chemotaxis (ortholog); epithelial cell differentiation (ortholog); PARTICIPATES IN Hedgehog signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); aortic valve stenosis (ortholog); asthma (ortholog); FOUND IN cell surface (ortholog); cornified envelope (ortholog); cytoplasm (ortholog) NW_004955409 8448120 8452437 - 102026836 AGCD01009411;GBBH01000869;GBDF01004149;XM_005376752 XP_005376809 MODEL 8938727 protein-coding LOC102008010 melanoma-associated antigen 10-like NW_004955498 7052955 7064840 - 102008010 AGCD01063141;AGCD01063142;GBDF01251926;XM_013505532;XM_013505533;XM_013505534;XM_013505535 XP_013360986;XP_013360987;XP_013360988;XP_013360989 MODEL 9023932 protein-coding LOC102029562 olfactory receptor 10G2-like NW_004955550 2307255 2308221 - 102029562 AGCD01072621;XM_005412151 XP_005412208 MODEL 8889132 protein-coding Tspan6 tetraspanin 6 INVOLVED IN negative regulation of canonical NF-kappaB signal transduction (ortholog); negative regulation of cytoplasmic pattern recognition receptor signaling pathway (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog) NW_004955503 6782264 6788533 - 102020466 AGCD01064769;AGCD01064770;GBBH01229992;XM_005406932 XP_005406989 MODEL 8725206 protein-coding Lrrc30 leucine rich repeat containing 30 NW_004955402 4174990 4178170 - 102004214 AGCD01000113;GBCB01044200;XM_005372621 XP_005372678 MODEL 10314539 ncrna LOC106148416 uncharacterized LOC106148416 NW_004955421 24008220 24011103 + 106148416 AGCD01022203;GBDJ01102436;XR_001233839 MODEL 8765042 protein-coding Scoc short coiled-coil protein INVOLVED IN positive regulation of macroautophagy (ortholog); regulation of protein complex stability (ortholog); FOUND IN endosome (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955428 3404372 3435653 - 102014926 AGCD01027657;GBDF01082674;XM_005386676;XM_005386677 XP_005386733;XP_005386734 MODEL 8747119 ncrna LOC102019813 uncharacterized LOC102019813 NW_004955420 18957081 18961026 + 102019813 AGCD01021053;GBDF01176261;XR_260721;XR_260722 MODEL 10338880 ncrna LOC106150162 uncharacterized LOC106150162 NW_004955466 8237618 8253402 + 106150162 AGCD01050982;GBDF01169912;XR_001236809 MODEL 10249378 ncrna LOC106150308 uncharacterized LOC106150308 NW_004955471 5566 6321 - 106150308 AGCD01052945;GBDK01379019;XR_001237044 MODEL 9053678 protein-coding Ksr2 kinase suppressor of ras 2 ENCODES a protein that exhibits MAP kinase scaffold activity (ortholog); mitogen-activated protein kinase kinase binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN calcium-mediated signaling (ortholog); positive regulation of cold-induced thermogenesis (ortholog); positive regulation of MAPK cascade (ortholog); PARTICIPATES IN the extracellular signal-regulated Raf/Mek/Erk signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); maturity-onset diabetes of the young type 1 (ortholog); morbid obesity (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955455 13375306 13777681 + 102021310 AGCD01046071;AGCD01046072;AGCD01046073;AGCD01046074;GBDF01067170;XM_013520300;XM_013520301 XP_013375754;XP_013375755 MODEL 10131109 ncrna LOC106147755 uncharacterized LOC106147755 NW_004955410 10960492 10964174 - 106147755 AGCD01010800;GBCB01061341;XR_001232699 MODEL 8994240 ncrna LOC102017137 uncharacterized LOC102017137 NW_004955423 5582136 5583107 + 102017137 AGCD01023564;GBDF01189480;XR_260955 MODEL 8958274 ncrna LOC102023990 uncharacterized LOC102023990 NW_004955464 4481893 4502655 - 102023990 AGCD01049991;GBDF01181625;XR_001236668;XR_263195 MODEL 8915197 ncrna LOC102027807 uncharacterized LOC102027807 NW_004955405 10442726 10448446 - 102027807 AGCD01004814;GBDI01182520;XR_001235312 MODEL 8815012 protein-coding Tmem175 transmembrane protein 175 ENCODES a protein that exhibits arachidonate binding (ortholog); potassium channel activity (ortholog); potassium ion leak channel activity (ortholog); INVOLVED IN lysosomal lumen pH elevation (ortholog); neuron cellular homeostasis (ortholog); phagosome-lysosome fusion (ortholog); FOUND IN endosome (ortholog); endosome membrane (ortholog); lysosomal membrane (ortholog) NW_004955514 434283 453239 + 102009410 AGCD01067010;GBDF01008538;XM_005408678;XM_005408679;XM_013506755;XM_013506756;XM_013506757;XM_013506758 XP_005408735;XP_005408736;XP_013362209;XP_013362210;XP_013362211;XP_013362212 MODEL 10143950 ncrna LOC106146625 uncharacterized LOC106146625 NW_004955487 8247744 8264001 - 106146625 AGCD01059432;XR_001231152 MODEL 8911879 protein-coding LOC102006100 TIR domain-containing adapter molecule 2 ENCODES a protein that exhibits molecular adaptor activity (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); negative regulation of chemokine (C-C motif) ligand 5 production (ortholog); negative regulation of toll-like receptor 4 signaling pathway (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; FOUND IN cytoplasm (ortholog); early endosome (ortholog); endoplasmic reticulum (ortholog) NW_004955408 35342733 35382821 - 102006100 AGCD01008938;AGCD01008939;GBBH01033904;GBDK01342442;XM_005376595 XP_005376652 MODEL 8861143 protein-coding Ykt6 YKT6 vesicular SNARE protein ENCODES a protein that exhibits protein-cysteine S-palmitoyltransferase activity (ortholog); SNAP receptor activity (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); retrograde transport, endosome to Golgi (ortholog); vesicle docking involved in exocytosis (ortholog); FOUND IN apical dendrite (ortholog); basal dendrite (ortholog); cytoplasm (ortholog) NW_004955456 7764125 7776429 - 102020420 AGCD01046431;GBDI01128538;XM_005396667;XM_005396668 XP_005396724;XP_005396725 MODEL 9002015 ncrna LOC102024698 uncharacterized LOC102024698 NW_004955423 25434798 25436601 + 102024698 AGCD01024075;GBDF01082418;XR_001234098;XR_001234099;XR_260996 MODEL 8720063 protein-coding Gpr35 G protein-coupled receptor 35 ENCODES a protein that exhibits C-X-C chemokine receptor activity (ortholog); chemokine receptor activity (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); chemokine-mediated signaling pathway (ortholog); cytoskeleton organization (ortholog); FOUND IN mitochondrial outer membrane (ortholog); plasma membrane (ortholog) NW_004955542 851895 856688 - 102015450 AGCD01071481;GBCE01072681;XM_005411154 XP_005411211 MODEL 8990010 protein-coding Phykpl 5-phosphohydroxy-L-lysine phospho-lyase ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Phosphohydroxylysinuria (ortholog) NW_004955408 2038168 2062681 + 102012065 AGCD01007986;GBBH01041369;GBDK01019520;XM_013508019;XM_013508024;XM_013508035;XR_001232156 XP_013363473;XP_013363478;XP_013363489 MODEL 8778587 protein-coding Nek8 NIMA related kinase 8 INVOLVED IN animal organ morphogenesis (ortholog); determination of left/right symmetry (ortholog); heart development (ortholog); ASSOCIATED WITH autosomal recessive polycystic kidney disease (ortholog); cystic kidney disease (ortholog); genetic disease (ortholog); FOUND IN ciliary base (ortholog); ciliary inversin compartment (ortholog); cilium (ortholog) NW_004955481 4417773 4427885 - 102021658 AGCD01056937;GBDI01002899;XM_005402716;XM_013503384;XM_013503385 XP_005402773;XP_013358838;XP_013358839 MODEL 10255996 ncrna LOC106149343 uncharacterized LOC106149343 NW_004955402 6984463 6987765 - 106149343 AGCD01000163;GBCE01081339;XR_001235481;XR_001235485 MODEL 8828160 pseudo LOC102012993 RING1 and YY1-binding protein pseudogene NW_004955432 3966376 3967076 + 102012993 AGCD01030683 MODEL 8922919 protein-coding Slc38a5 solute carrier family 38 member 5 ENCODES a protein that exhibits alanine transmembrane transporter activity (ortholog); amino acid transmembrane transporter activity (ortholog); glycine transmembrane transporter activity (ortholog); INVOLVED IN amino acid export across plasma membrane (ortholog); amino acid import across plasma membrane (ortholog); asparagine transmembrane transport (ortholog); ASSOCIATED WITH Endotoxemia (ortholog); FOUND IN plasma membrane (ortholog) NW_004955543 15968 24644 - 102017059 AGCD01071554;GBCE01162641;XM_005415372 XP_005415429 MODEL 10337101 protein-coding LOC106148825 formin-like protein 18 NW_004955429 6535276 6535776 - 106148825 AGCD01028550;GBDF01042372;XM_013515494 XP_013370948 MODEL 8756488 protein-coding Ssc5d scavenger receptor cysteine rich family member with 5 domains ENCODES a protein that exhibits extracellular matrix binding (ortholog); fibronectin binding (ortholog); laminin binding (ortholog); INVOLVED IN defense response (ortholog); defense response to Gram-negative bacterium (ortholog); defense response to Gram-positive bacterium (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog) NW_004955567 789396 809597 - 102021609 AGCD01074433;GBDJ01132647;XM_005413315;XM_005413316;XM_005413317;XM_005413318;XM_013509236;XM_013509237;XM_013509238 XP_005413372;XP_005413373;XP_005413374;XP_005413375;XP_013364690;XP_013364691;XP_013364692 MODEL 8905145 pseudo LOC102016377 fatty acyl-CoA reductase 1 pseudogene NW_004955475 612776 613779 + 102016377 AGCD01054701 MODEL 8762091 protein-coding Efcab3 EF-hand calcium binding domain 3 NW_004955478 9284421 9778849 - 102009052 AGCD01056061;AGCD01056062;AGCD01056063;AGCD01056064;AGCD01056065;AGCD01056066;AGCD01056067;AGCD01056068;AGCD01056069;AGCD01056070;AGCD01056071;AGCD01056072;AGCD01056073;AGCD01056074;AGCD01056075;AGCD01056076;AGCD01056077;AGCD01056078;AGCD01056079;AGCD01056080;AGCD01056081;AGCD01056082;AGCD01056083;AGCD01056084;AGCD01056085;AGCD01056086;AGCD01056087;AGCD01056088;AGCD01056089;AGCD01056090;AGCD01056091;AGCD01056092;AGCD01056093;AGCD01056094;AGCD01056095;AGCD01056096;AGCD01056097;GBDK01169061;XM_005402243;XM_005402244;XM_005402245;XM_005402246;XM_005402247 XP_005402300;XP_005402301;XP_005402302;XP_005402303;XP_005402304 MODEL 8948794 protein-coding Ikbip IKBKB interacting protein INVOLVED IN negative regulation of canonical NF-kappaB signal transduction (ortholog); protein phosphorylation (ortholog); response to interleukin-1 (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955405 34600211 34619614 - 102015476 AGCD01005380;GBDK01395326;XM_005374509;XM_005374510 XP_005374566;XP_005374567 MODEL 8962167 protein-coding Tnpo2 transportin 2 INVOLVED IN negative regulation of muscle cell differentiation (ortholog); protein import into nucleus (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual developmental disorder with hypotonia, impaired speech, and dysmorphic facies (ortholog); polycystic ovary syndrome (ortholog) NW_004955415 31807701 31826938 - 102019909 AGCD01016698;GBDJ01136647;XM_005381021;XM_013512350;XM_013512351;XM_013512352 XP_005381078;XP_013367804;XP_013367805;XP_013367806 MODEL 10237470 ncrna LOC106146774 uncharacterized LOC106146774 NW_004955495 945484 960075 - 106146774 AGCD01061663;GBDI01011083;XR_001231336 MODEL 8866998 pseudo LOC102005051 nucleosome assembly protein 1-like 1 pseudogene NW_004955491 8228056 8233055 + 102005051 AGCD01060610 MODEL 8732003 protein-coding Bpifb3 BPI fold containing family B member 3 FOUND IN cytoplasm (ortholog) NW_004955422 28192359 28208946 - 102003885 AGCD01023345;GBBH01229204;XM_005384853 XP_005384910 MODEL 8800952 protein-coding Gatb glutamyl-tRNA amidotransferase subunit B ENCODES a protein that exhibits glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity (ortholog); INVOLVED IN glutaminyl-tRNAGln biosynthesis via transamidation (ortholog); mitochondrial translation (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 41 (ortholog); Mitochondrial Cardiomyopathy (ortholog); FOUND IN glutamyl-tRNA(Gln) amidotransferase complex (ortholog); mitochondrion (ortholog) NW_004955471 6230027 6313655 - 102024896 AGCD01053122;AGCD01053123;GBCB01056706;XM_005400896 XP_005400953 MODEL 8923832 pseudo LOC102003992 aldose reductase-related protein 2 pseudogene NW_004955430 5217088 5218084 + 102003992 AGCD01029256 MODEL 10160285 ncrna LOC106147344 uncharacterized LOC106147344 NW_004955545 1585149 1595277 + 106147344 AGCD01071861;AGCD01071862;GBCE01037663;XR_001232202 MODEL 9058377 pseudo LOC102004694 tubulin alpha chain-like NW_004955470 11493665 11502589 + 102004694 AGCD01052889 MODEL 8888377 pseudo LOC102022647 B-cell CLL/lymphoma 7 protein family member C pseudogene NW_004955445 7513797 7515845 - 102022647 AGCD01039543 MODEL 8821589 pseudo LOC102021952 ribonuclease T2 pseudogene NW_004955411 30267102 30267877 + 102021952 AGCD01012251 MODEL 8968387 ncrna LOC102020858 uncharacterized LOC102020858 NW_004955583 813195 820896 - 102020858 AGCD01075866;GBDI01384318;XR_001232503;XR_001232504;XR_001232505;XR_265098 MODEL 8707790 protein-coding Hax1 HCLS1 associated protein X-1 ENCODES a protein that exhibits interleukin-1 binding (ortholog); protein domain specific binding (ortholog); signaling adaptor activity (ortholog); INVOLVED IN cellular response to cytokine stimulus (ortholog); granulocyte colony-stimulating factor signaling pathway (ortholog); mitochondrion organization (ortholog); ASSOCIATED WITH congenital insensitivity to pain with anhidrosis (ortholog); genetic disease (ortholog); neutropenia (ortholog); FOUND IN actin cytoskeleton (ortholog); apical plasma membrane (ortholog); clathrin-coated vesicle (ortholog) NW_004955545 816789 819667 + 102009107 AGCD01071817;GBBH01119014;XM_005411511;XM_005411512;XM_005411513;XM_005411514 XP_005411568;XP_005411569;XP_005411570;XP_005411571 MODEL 8995791 protein-coding LOC102013405 cytochrome P450 2D17-like NW_004955413 27621018 27639195 - 102013405 AGCD01014521;AGCD01014522;AGCD01014523;AGCD01014524;AGCD01014525;AGCD01014526;GBBH01145942;XM_013511462 XP_013366916 MODEL 8933420 ncrna LOC102029564 uncharacterized LOC102029564 NW_004955555 781963 786263 - 102029564 AGCD01073049;GBCE01175436;XR_001232312;XR_264961 MODEL 10209599 ncrna LOC106148417 uncharacterized LOC106148417 NW_004955421 27783770 27794036 - 106148417 AGCD01022293;AGCD01022294;GBDF01208900;XR_001233840 MODEL 9027059 ncrna LOC102025760 uncharacterized LOC102025760 NW_004955407 33348118 33379694 + 102025760 AGCD01007697;GBDF01251116;XR_259600 MODEL 39131850 snrna U1 U1 spliceosomal RNA 8940448 protein-coding LOC102021590 putative olfactory receptor 2W6 NW_004955524 202737 203681 - 102021590 AGCD01068669;XM_005409657 XP_005409714 MODEL 8735283 protein-coding Kti12 KTI12 chromatin associated homolog NW_004955464 7082211 7084748 + 102022174 AGCD01050053;GBCE01122911;XM_005398591 XP_005398648 MODEL 10136020 ncrna LOC106146789 uncharacterized LOC106146789 NW_004955495 2173356 2180975 + 106146789 AGCD01061750;GBCQ01088873;XR_001231352 MODEL 10101191 ncrna LOC106146626 uncharacterized LOC106146626 NW_004955487 9117417 9121639 - 106146626 AGCD01059451;AGCD01059452;GBDF01252255;XR_001231155 MODEL 10163420 ncrna LOC106149491 uncharacterized LOC106149491 NW_004955447 18313935 18318126 + 106149491 AGCD01041166;GBCE01017674;XR_001235718 MODEL 8912503 pseudo LOC102005056 cullin-4B pseudogene NW_004955422 28787889 28796918 + 102005056 AGCD01023368;AGCD01023369;AGCD01023370 MODEL 39133732 mirna MIR598 microRNA 598 8753136 ncrna LOC102023012 uncharacterized LOC102023012 NW_004955463 6158930 6199332 + 102023012 AGCD01049657;AGCD01049658;AGCD01049659;GBDF01178775;XR_263154 MODEL 8809276 protein-coding Ylpm1 YLP motif containing 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); regulation of telomere maintenance (ortholog); ASSOCIATED WITH myoepithelioma (ortholog); FOUND IN nuclear speck (ortholog); nucleus (ortholog) NW_004955523 721447 784097 - 102016741 AGCD01068476;AGCD01068477;GBDF01121095;GBDK01234656;XM_013507171 XP_013362625 MODEL 8877409 protein-coding Pi15 peptidase inhibitor 15 FOUND IN extracellular region (ortholog) NW_004955444 5647862 5674470 - 102018536 AGCD01038837;GBDJ01187421;XM_005392074 XP_005392131 MODEL 10182872 protein-coding LOC106150163 uncharacterized LOC106150163 NW_004955466 1353464 1363087 + 106150163 AGCD01050703;GBDF01061140;XM_013521974 XP_013377428 MODEL 8732879 protein-coding Tspan7 tetraspanin 7 INVOLVED IN axonogenesis (ortholog); regulation of postsynaptic neurotransmitter receptor internalization (ortholog); ASSOCIATED WITH intellectual disability (ortholog); non-syndromic X-linked intellectual disability 58 (ortholog); FOUND IN postsynapse (ortholog) NW_004955566 75576 203512 + 102007825 AGCD01074344;GBBH01119190;XM_005413275 XP_005413332 MODEL 9029785 pseudo LOC102004696 V-type proton ATPase subunit F pseudogene NW_004955414 25610808 25611315 + 102004696 AGCD01015615;XM_005380431 MODEL 8854523 protein-coding Scp2 sterol carrier protein 2 ENCODES a protein that exhibits acetyl-CoA C-acyltransferase activity (ortholog); acetyl-CoA C-myristoyltransferase activity (ortholog); cholesterol binding (ortholog); INVOLVED IN acylglycerol metabolic process (ortholog); arachidonate metabolic process (ortholog); bile acid metabolic process (ortholog); PARTICIPATES IN bile acid biosynthetic pathway; cerebrotendinous xanthomatosis pathway; congenital bile acid synthesis defect pathway; ASSOCIATED WITH dystonia (ortholog); Experimental Diabetes Mellitus (ortholog); leukodystrophy (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); mitochondrion (ortholog) NW_004955464 6097241 6224287 - 102014223 AGCD01050018;AGCD01050019;GBCQ01008435;XM_005398565;XM_005398566 XP_005398622;XP_005398623 MODEL 10184303 ncrna LOC106147756 uncharacterized LOC106147756 NW_004955410 1773337 1778565 + 106147756 AGCD01010624;GBDK01116516;XR_001232704 MODEL 8758239 protein-coding Slc38a6 solute carrier family 38 member 6 ENCODES a protein that exhibits L-glutamate transmembrane transporter activity (ortholog); L-glutamine transmembrane transporter activity (ortholog); FOUND IN plasma membrane (ortholog) NW_004955466 8626193 8679764 - 102014433 AGCD01050995;AGCD01050996;AGCD01050997;GBDI01324016;XM_005399168;XM_005399169;XM_013521932;XM_013521933 XP_005399225;XP_005399226;XP_013377386;XP_013377387 MODEL 9057638 protein-coding Hbb hemoglobin subunit beta ENCODES a protein that exhibits haptoglobin binding (ortholog); hemoglobin alpha binding (ortholog); hemoglobin beta binding (ortholog); INVOLVED IN erythrocyte development (ortholog); glutathione metabolic process (ortholog); hemopoiesis (ortholog); ASSOCIATED WITH acute chest syndrome (ortholog); adult respiratory distress syndrome (ortholog); alpha thalassemia (ortholog); FOUND IN extracellular region (ortholog); haptoglobin-hemoglobin complex (ortholog); hemoglobin complex (ortholog) NW_004955414 21188012 21189363 - 102028849 AGCD01015410;GBBH01000342;XM_005380076 XP_005380133 MODEL 8746306 protein-coding LOC102013406 olfactory receptor 6-like NW_004955414 22692862 22693770 - 102013406 AGCD01015471;GBBH01130436;XM_005380511 XP_005380568 MODEL 9001258 protein-coding LOC102027816 zinc finger protein 717-like NW_004955456 8048123 8060018 + 102027816 AGCD01046447;GBDF01010486;XM_013520526 XP_013375980 MODEL 10318877 ncrna LOC106148826 uncharacterized LOC106148826 NW_004955429 19663556 19687765 - 106148826 AGCD01028967;GBDJ01415849;XR_001234526;XR_001234527 MODEL 8911148 pseudo LOC102006101 serine incorporator 3-like NW_004955459 2481300 2493364 - 102006101 AGCD01047991 MODEL 9019607 protein-coding Tmem176a transmembrane protein 176A INVOLVED IN negative regulation of dendritic cell differentiation (ortholog); ASSOCIATED WITH long QT syndrome (ortholog) NW_004955491 5209426 5213194 + 102024808 AGCD01060474;GBBH01035084;XM_005404792 XP_005404849 MODEL 8870289 ncrna LOC102007553 uncharacterized LOC102007553 NW_004955483 2038491 2047890 - 102007553 AGCD01057666;GBCQ01014966;XR_263863 MODEL 8989751 protein-coding Ssh1 slingshot protein phosphatase 1 ENCODES a protein that exhibits actin binding (ortholog); phosphoprotein phosphatase activity (ortholog); protein serine/threonine phosphatase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cell morphogenesis (ortholog); cellular response to ATP (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; insulin responsive facilitative sugar transporter mediated glucose transport pathway; Rab family mediated signaling pathway; ASSOCIATED WITH Neointima (ortholog); primary ovarian insufficiency (ortholog); FOUND IN cell leading edge (ortholog); cell projection (ortholog); cytoplasm (ortholog) NW_004955455 10019992 10077485 - 102027716 AGCD01045935;AGCD01045936;GBCE01085173;GBDF01016189;XM_013520441 XP_013375895 MODEL 8841607 protein-coding Ntmt1 N-terminal Xaa-Pro-Lys N-methyltransferase 1 ENCODES a protein that exhibits histone methyltransferase activity (ortholog); N-terminal protein N-methyltransferase activity (ortholog); protein methyltransferase activity (ortholog); INVOLVED IN chromosome segregation (ortholog); N-terminal peptidyl-alanine trimethylation (ortholog); N-terminal peptidyl-glycine methylation (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955570 1730407 1747813 + 102019546 AGCD01074826;AGCD01074827;AGCD01074828;GBDJ01394132;XM_005413625;XM_005413626;XM_005413627;XM_013509425;XM_013509426 XP_005413682;XP_005413683;XP_005413684;XP_013364879;XP_013364880 MODEL 8967721 ncrna LOC102024703 uncharacterized LOC102024703 NW_004955424 16916805 16925884 - 102024703 AGCD01024755;GBDF01076538;XR_001234153;XR_001234154;XR_261071 MODEL 8783345 protein-coding Canx calnexin ENCODES a protein that exhibits apolipoprotein binding (ortholog); ionotropic glutamate receptor binding (ortholog); INVOLVED IN clathrin-dependent endocytosis (ortholog); synaptic vesicle endocytosis (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Myocardial Ischemia (ortholog); obesity (ortholog); FOUND IN axon (ortholog); dendrite cytoplasm (ortholog); dendritic spine (ortholog) NW_004955408 850773 894362 - 102004245 AGCD01007937;AGCD01007938;AGCD01007939;GBCQ01000683;XM_005376018;XM_005376019 XP_005376075;XP_005376076 MODEL 8841385 ncrna LOC102008011 uncharacterized LOC102008011 NW_004955426 3353899 3375511 + 102008011 AGCD01026078;GBDI01255537;XR_261184;XR_261185 MODEL 8824659 protein-coding Gatc glutamyl-tRNA amidotransferase subunit C INVOLVED IN glutaminyl-tRNAGln biosynthesis via transamidation (ortholog); mitochondrial translation (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 42 (ortholog); Mitochondrial Cardiomyopathy (ortholog); FOUND IN glutamyl-tRNA(Gln) amidotransferase complex (ortholog); mitochondrion (ortholog) NW_004955455 11184400 11195398 - 102011734 AGCD01045986;GBCQ01066619;XM_005396509 XP_005396566 MODEL 9010883 protein-coding Tspyl5 TSPY like 5 INVOLVED IN cellular response to gamma radiation (ortholog); positive regulation of cell population proliferation (ortholog); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog) NW_004955417 13133655 13136768 - 102008102 AGCD01018171;XM_005381841 XP_005381898 MODEL 8915002 pseudo LOC102016713 28S ribosomal protein S36, mitochondrial pseudogene NW_004955484 1879480 1879862 - 102016713 AGCD01058070 MODEL 8711142 protein-coding Nek9 NIMA related kinase 9 ENCODES a protein that exhibits protein kinase activator activity (ortholog); protein kinase binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN mitotic cell cycle (ortholog); regulation of mitotic cell cycle (ortholog); ASSOCIATED WITH ARTHROGRYPOSIS, PERTHES DISEASE, AND UPWARD GAZE PALSY (ortholog); cleft palate (ortholog); genetic disease (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955523 443832 483397 + 102011901 AGCD01068457;AGCD01068458;GBDF01189505;GBDJ01229358;XM_013507146 XP_013362600 MODEL 10292110 ncrna LOC106149492 uncharacterized LOC106149492 NW_004955447 10749280 10754433 + 106149492 AGCD01040888;GBCB01010476;XR_001235719 MODEL 10381403 protein-coding LOC106149344 basic proline-rich protein-like NW_004955443 8554132 8559145 + 106149344 AGCD01038328;AGCD01038329;GBBH01144262;GBDJ01214094;XM_013518088 XP_013373542 MODEL 8789920 pseudo LOC102012995 myb-related protein B pseudogene NW_004955433 16071001 16073415 - 102012995 AGCD01031785 MODEL 9007841 protein-coding Lrrc32 leucine rich repeat containing 32 ENCODES a protein that exhibits receptor ligand inhibitor activity (ortholog); transforming growth factor beta binding (ortholog); INVOLVED IN establishment of protein localization to extracellular region (ortholog); negative regulation of activated T cell proliferation (ortholog); negative regulation of cytokine production (ortholog); ASSOCIATED WITH asthma (ortholog); brain glioblastoma multiforme (ortholog); chronic obstructive pulmonary disease (ortholog); FOUND IN cell surface (ortholog); nucleoplasm (ortholog); plasma membrane (ortholog) NW_004955414 15296704 15309088 + 102014441 AGCD01015182;GBBH01168987;XM_005379850;XM_005379851;XM_005379852;XM_005379853;XM_013512077 XP_005379907;XP_005379908;XP_005379909;XP_005379910;XP_013367531 MODEL 8868124 ncrna LOC102020860 uncharacterized LOC102020860 NW_004955449 714123 720440 - 102020860 AGCD01041771;GBDF01000343;XR_001235819 MODEL 8906537 protein-coding LOC102017138 olfactory receptor 19-like NW_004955495 8523068 8523988 - 102017138 AGCD01062213;XM_013505149 XP_013360603 MODEL 8953020 protein-coding LOC102022297 arylacetamide deacetylase-like 4 NW_004955486 1253339 1293734 - 102022297 AGCD01058938;AGCD01058939;XM_005403944;XM_013504152 XP_005404001;XP_013359606 MODEL 8960084 ncrna LOC102016381 uncharacterized LOC102016381 NW_004955479 5274664 5282636 - 102016381 AGCD01056342;XR_263735 MODEL 39131856 snrna U1 U1 spliceosomal RNA 10125707 ncrna LOC106148280 uncharacterized LOC106148280 NW_004955419 13937507 13939082 + 106148280 AGCD01020009;XR_001233565 MODEL 9002298 protein-coding Ikbkb inhibitor of nuclear factor kappa B kinase subunit beta ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); IkappaB kinase activity (ortholog); INVOLVED IN B cell homeostasis (ortholog); canonical NF-kappaB signal transduction (ortholog); cellular response to tumor necrosis factor (ortholog); PARTICIPATES IN adenosine signaling pathway; FasL mediated signaling pathway; granulocyte-macrophage colony-stimulating factor signaling pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); breast cancer (ortholog); Choroidal Neovascularization (ortholog); FOUND IN CD40 receptor complex (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955536 611965 658647 - 102009105 AGCD01070732;GBDI01225670;XM_005410510 XP_005410567 MODEL 8713883 protein-coding Tnpo3 transportin 3 ENCODES a protein that exhibits identical protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN protein import into nucleus (ortholog); ASSOCIATED WITH autosomal dominant limb-girdle muscular dystrophy (ortholog); autosomal dominant limb-girdle muscular dystrophy type 2 (ortholog); genetic disease (ortholog); FOUND IN annulate lamellae (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955479 9739927 9831276 - 102007011 AGCD01056494;AGCD01056495;AGCD01056496;AGCD01056497;GBDK01146655;XM_005402403;XM_005402405 XP_005402460;XP_005402462 MODEL 8723177 pseudo LOC102003996 40S ribosomal protein S20 pseudogene NW_004955513 5462592 5467878 + 102003996 AGCD01066971 MODEL 8713505 protein-coding Gpr37 G protein-coupled receptor 37 ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); heat shock protein binding (ortholog); Hsp70 protein binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); cellular response to reactive oxygen species (ortholog); dendrite development (ortholog); ASSOCIATED WITH Lewy body dementia (ortholog); malignant mesothelioma (ortholog); Parkinson's disease (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); endoplasmic reticulum (ortholog) NW_004955479 6061424 6080129 - 102017872 AGCD01056375;GBDF01251628;XM_005402343 XP_005402400 MODEL 10364391 ncrna LOC106147345 uncharacterized LOC106147345 NW_004955546 1588271 1589413 + 106147345 AGCD01072073;GBDF01249396;XR_001232204 MODEL 10333368 ncrna LOC106146627 uncharacterized LOC106146627 NW_004955487 9110929 9113700 - 106146627 AGCD01059451;GBDF01132345;XR_001231156 MODEL 8975288 protein-coding Hbegf heparin binding EGF like growth factor ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); growth factor activity (ortholog); heparin binding (ortholog); INVOLVED IN cell chemotaxis (ortholog); cell migration (ortholog); epidermal growth factor receptor signaling pathway (ortholog); PARTICIPATES IN epidermal growth factor/neuregulin signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Animal Disease Models (ortholog); Cardiotoxicity (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955418 259860 321340 + 102005470 AGCD01018670;AGCD01018671;GBDF01303290;XM_005382030;XM_005382031 XP_005382087;XP_005382088 MODEL 10287377 pseudo LOC106150309 60S ribosomal protein L21-like NW_004955471 7170758 7171236 - 106150309 AGCD01053140 MODEL 10234119 ncrna LOC106148281 uncharacterized LOC106148281 NW_004955419 14054230 14069067 + 106148281 AGCD01020010;AGCD01020011;GBDF01188231;XR_001233566 MODEL 8814652 pseudo LOC102022651 mitochondrial import inner membrane translocase subunit Tim9 pseudogene NW_004955448 10995715 10996226 + 102022651 AGCD01041510;XM_005393162 MODEL 8867065 protein-coding Ntmt2 N-terminal Xaa-Pro-Lys N-methyltransferase 2 ENCODES a protein that exhibits N-terminal protein N-methyltransferase activity (ortholog); ASSOCIATED WITH Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN nucleus (ortholog) NW_004955462 6450063 6473919 + 102005679 AGCD01049283;GBCB01076101;XM_005398170 XP_005398227 MODEL 8759743 pseudo LOC102009446 heat shock cognate 71 kDa protein pseudogene NW_004955402 47210640 47213865 + 102009446 AGCD01001177;XR_259129 MODEL 9014446 protein-coding LOC102021954 heparan sulfate glucosamine 3-O-sulfotransferase 3B1 NW_004955467 3209822 3249484 - 102021954 AGCD01051331;AGCD01051332;GBCQ01153180;XM_005399335 XP_005399392 MODEL 8751911 ncrna LOC102023993 uncharacterized LOC102023993 NW_004955412 31694982 31714129 + 102023993 AGCD01013343;GBDF01157393;XR_001232858;XR_001232859;XR_260033 MODEL 8857460 protein-coding LOC102004703 leucine-rich repeat-containing protein 48 NW_004955478 11265115 11298661 - 102004703 AGCD01056165;AGCD01056166;GBBH01117002;GBDJ01386727;XM_013503219 XP_013358673 MODEL 9050173 protein-coding LOC102029565 zinc finger protein 83-like NW_004955558 94584 118620 - 102029565 AGCD01073339;AGCD01073340;AGCD01073341;GBDI01055102;GBDJ01337625;XM_013508856 XP_013364310 MODEL 8821811 protein-coding Efcab5 EF-hand calcium binding domain 5 NW_004955481 3207789 3381228 - 102009176 AGCD01056895;AGCD01056896;AGCD01056897;AGCD01056898;AGCD01056899;AGCD01056900;AGCD01056901;AGCD01056902;AGCD01056903;GBDF01088005;XM_013503350;XM_013503351;XM_013503352;XM_013503353;XM_013503354;XM_013503355 XP_013358804;XP_013358805;XP_013358806;XP_013358807;XP_013358808;XP_013358809 MODEL 8756483 pseudo LOC102021591 origin recognition complex subunit 6 pseudogene NW_004955435 4369736 4386510 + 102021591 AGCD01032826;AGCD01032827;XM_005389096 MODEL 10079116 pseudo LOC106146791 60S ribosomal protein L21 pseudogene NW_004955495 3703934 3704419 - 106146791 AGCD01061879 MODEL 9034732 ncrna LOC102016383 uncharacterized LOC102016383 NW_004955481 10068625 10082092 - 102016383 AGCD01057135;GBDF01119571;XR_263807 MODEL 8781509 protein-coding Slc38a7 solute carrier family 38 member 7 ENCODES a protein that exhibits L-asparagine:sodium symporter activity (ortholog); L-glutamine:sodium symporter activity (ortholog); INVOLVED IN asparagine transport (ortholog); L-glutamine transport (ortholog); sodium ion transport (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN axon (ortholog); lysosomal membrane (ortholog); neuronal cell body (ortholog) NW_004955433 16086747 16100185 - 102016190 AGCD01031785;GBDJ01127120;XM_013516230;XM_013516231 XP_013371684;XP_013371685 MODEL 8903198 ncrna LOC102027817 uncharacterized LOC102027817 NW_004955456 16185647 16192222 + 102027817 AGCD01046693;GBBH01101263;XR_001236359;XR_262917;XR_262918 MODEL 10328642 ncrna LOC106148827 uncharacterized LOC106148827 NW_004955429 21793964 21797157 + 106148827 AGCD01029009;GBDJ01424191;XR_001234528 MODEL 8972222 pseudo LOC102007555 eukaryotic translation initiation factor 2A-like NW_004955484 7623437 7625083 + 102007555 AGCD01058340 MODEL 150537102 mirna MIR599 microRNA 599 8792162 protein-coding Pi16 peptidase inhibitor 16 INVOLVED IN negative regulation of cell growth involved in cardiac muscle cell development (ortholog); FOUND IN extracellular region (ortholog) NW_004955437 6066685 6075077 - 102023293 AGCD01034414;GBBH01004356;XM_005389631;XM_013517114;XM_013517115 XP_005389688;XP_013372568;XP_013372569 MODEL 10364995 protein-coding LOC106147612 serine/arginine repetitive matrix protein 3-like NW_004955409 622158 622559 + 106147612 AGCD01009159;GBDF01010454;XM_013510025 XP_013365479 MODEL 10313142 ncrna LOC106149345 uncharacterized LOC106149345 NW_004955443 7460463 7473918 - 106149345 AGCD01038284;GBDI01361930;XR_001235480 MODEL 8842406 protein-coding Tsr1 TSR1 ribosome maturation factor ASSOCIATED WITH primary microcephaly (ortholog) NW_004955481 907441 919613 + 102010367 AGCD01056816;GBDF01127365;XM_005402590 XP_005402647 MODEL 10178955 protein-coding LOC106149493 translation initiation factor IF-2-like NW_004955447 14519064 14519336 - 106149493 AGCD01041011;GBDF01281593;XM_013518503 XP_013373957 MODEL 8889042 protein-coding Lrrc34 leucine rich repeat containing 34 INVOLVED IN gene expression (ortholog); telomere maintenance (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Joubert syndrome (ortholog) NW_004955420 44454 66222 - 102015015 AGCD01020530;GBBH01149709;XM_005382958;XM_005382959 XP_005383015;XP_005383016 MODEL 10112143 protein-coding LOC106149757 uncharacterized LOC106149757 NW_004955405 39673634 39690903 + 106149757 AGCD01005503;XM_013519749 XP_013375203 MODEL 8979708 protein-coding Tspan8 tetraspanin 8 ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN negative regulation of blood coagulation (ortholog); regulation of gene expression (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Arterial Occlusive Diseases (ortholog); breast ductal carcinoma (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955405 11200290 11233094 - 102030592 AGCD01004827;GBBH01001841;XM_005374318 XP_005374375 MODEL 39131863 snrna U1 U1 spliceosomal RNA 8735089 protein-coding LOC102013407 uncharacterized LOC102013407 NW_004955415 13302201 13314397 + 102013407 AGCD01016246;GBDF01006431;XM_005380747;XM_005380748;XM_005380749;XR_001233193;XR_001233194;XR_001233195;XR_001233196;XR_260288 XP_005380804;XP_005380805;XP_005380806 MODEL 8944003 ncrna LOC102008014 uncharacterized LOC102008014 NW_004955427 4746086 4759360 - 102008014 AGCD01026973;GBDF01305344;XR_261235 MODEL 8710326 ncrna LOC102003998 uncharacterized LOC102003998 NW_004955433 12835847 12849596 + 102003998 AGCD01031671;GBDF01156740;XR_261588 MODEL 10251909 pseudo LOC106147346 zinc finger protein 791 pseudogene NW_004955546 495731 496540 + 106147346 AGCD01071993 MODEL 8737374 protein-coding LOC102016716 olfactory receptor 4B1-like NW_004955422 340029 340971 - 102016716 AGCD01022404;XM_005383951 XP_005384008 MODEL 10288530 ncrna LOC106146775 uncharacterized LOC106146775 NW_004955495 875276 881117 + 106146775 AGCD01061657;AGCD01061658;GBDF01114859;XR_001231337 MODEL 8783881 protein-coding LOC102023014 phosphatidylinositol 3-kinase regulatory subunit gamma NW_004955464 12100598 12260750 + 102023014 AGCD01050180;AGCD01050181;AGCD01050182;AGCD01050183;AGCD01050184;AGCD01050185;AGCD01050186;AGCD01050187;AGCD01050188;AGCD01050189;GBDF01007439;XM_005398685;XM_005398686;XM_013521606;XM_013521607 XP_005398742;XP_005398743;XP_013377060;XP_013377061 MODEL 10208159 ncrna LOC106150164 uncharacterized LOC106150164 NW_004955466 147193 148700 + 106150164 AGCD01050651;GBCB01097916;XR_001236811 MODEL 8998012 ncrna LOC102012998 uncharacterized LOC102012998 NW_004955435 13458284 13466728 + 102012998 AGCD01033202;AGCD01033203;XR_261687 MODEL 8724917 protein-coding Nelfa negative elongation factor complex member A ENCODES a protein that exhibits chromatin binding (ortholog); molecular adaptor activity (ortholog); RNA polymerase inhibitor activity (ortholog); INVOLVED IN negative regulation of transcription elongation by RNA polymerase II (ortholog); positive regulation of protein modification process (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; FOUND IN NELF complex (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955514 1162993 1173278 - 102020367 AGCD01067037;GBCE01098373;XM_005408718 XP_005408775 MODEL 8871459 protein-coding Scp2d1 SCP2 sterol binding domain containing 1 NW_004955415 27215991 27229799 + 102018922 AGCD01016623;AGCD01016624;GBDF01010710;XM_005380936;XM_013512406;XM_013512407 XP_005380993;XP_013367860;XP_013367861 MODEL 8764163 protein-coding Hbp1 HMG-box transcription factor 1 ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of lipid transport (ortholog); negative regulation of reactive oxygen species biosynthetic process (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH COVID-19 (ortholog); osteoarthritis (ortholog); FOUND IN nuclear speck (ortholog) NW_004955410 11626743 11652343 + 102005119 AGCD01010829;AGCD01010830;GBDF01118971;XM_005377281;XM_005377282 XP_005377338;XP_005377339 MODEL 8974597 protein-coding Ntn1 netrin 1 INVOLVED IN anterior/posterior axon guidance (ortholog); axon guidance (ortholog); axonogenesis (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); brain edema (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN basement membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955467 7795175 7991597 - 102006327 AGCD01051438;AGCD01051439;AGCD01051440;AGCD01051441;AGCD01051442;GBBH01065257;GBCE01000350;XM_005399748 XP_005399805 MODEL 8784098 protein-coding LOC102004707 putative spermatogenesis-associated protein 31D3 NW_004955417 24627190 24630152 + 102004707 AGCD01018467;GBDF01006014;XM_005381905 XP_005381962 MODEL 8997881 protein-coding LOC102005068 olfactory receptor 8K3-like NW_004955511 1446139 1447077 + 102005068 AGCD01066367;XM_005407961 XP_005408018 MODEL 10272587 ncrna LOC106150165 uncharacterized LOC106150165 NW_004955466 4555247 4558353 + 106150165 AGCD01050833;GBBH01203264;XR_001236812 MODEL 8941536 ncrna LOC102006108 uncharacterized LOC102006108 NW_004955411 31891671 31897535 - 102006108 AGCD01012289;GBDK01379399;XR_001232822;XR_001232823 MODEL 9022747 protein-coding Ssh2 slingshot protein phosphatase 2 ENCODES a protein that exhibits actin binding (ortholog); phosphoprotein phosphatase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); positive regulation of cell migration (ortholog); protein dephosphorylation (ortholog) NW_004955481 3380212 3633074 + 102008314 AGCD01056903;AGCD01056904;AGCD01056905;AGCD01056906;AGCD01056907;AGCD01056908;AGCD01056909;GBDF01161851;XM_005402672;XM_005402673;XM_013503356 XP_005402729;XP_005402730;XP_013358810 MODEL 8934260 pseudo LOC102021595 small glutamine-rich tetratricopeptide repeat-containing protein beta pseudogene NW_004955539 1341270 1342180 + 102021595 AGCD01071206 MODEL 9004012 pseudo LOC102016385 60S ribosomal protein L30-like NW_004955419 3092044 3092797 + 102016385 AGCD01019704 MODEL 8854321 protein-coding Cap1 cyclase associated actin cytoskeleton regulatory protein 1 INVOLVED IN actin cytoskeleton organization (ortholog); ameboidal-type cell migration (ortholog); cell morphogenesis (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); Neoplasm Metastasis (ortholog); osteoporosis (ortholog); FOUND IN cortical actin cytoskeleton (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955452 17503530 17528049 + 102004448 AGCD01044558;AGCD01044559;GBDF01010423;XM_005395275;XM_005395276;XM_005395277;XM_013519550 XP_005395332;XP_005395333;XP_005395334;XP_013375004 MODEL 8712105 protein-coding Ikbke inhibitor of nuclear factor kappa B kinase subunit epsilon ENCODES a protein that exhibits identical protein binding (ortholog); IkappaB kinase activity (ortholog); K48-linked polyubiquitin modification-dependent protein binding (ortholog); INVOLVED IN cellular response to virus (ortholog); gene expression (ortholog); immune response (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial membrane (ortholog) NW_004955406 42056014 42077701 + 102017949 AGCD01006696;GBDK01143454;XM_005375388;XM_005375389;XM_005375390;XM_005375392;XM_005375393 XP_005375445;XP_005375446;XP_005375447;XP_005375449;XP_005375450 MODEL 9052141 protein-coding Tnr tenascin R ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN associative learning (ortholog); extracellular matrix organization (ortholog); locomotory exploration behavior (ortholog); ASSOCIATED WITH genetic disease (ortholog); Gliosis (ortholog); NEURODEVELOPMENTAL DISORDER, NONPROGRESSIVE, WITH SPASTICITY AND TRANSIENT OPISTHOTONUS (ortholog); FOUND IN cell surface (ortholog); extracellular matrix (ortholog); glutamatergic synapse (ortholog) NW_004955406 15007248 15512219 - 102015803 AGCD01005975;AGCD01005976;AGCD01005977;AGCD01005978;AGCD01005979;AGCD01005980;AGCD01005981;GBDI01106197;XM_013520943;XR_001236463;XR_001236464 XP_013376397 MODEL 10213291 ncrna LOC106148282 uncharacterized LOC106148282 NW_004955419 14095836 14104210 - 106148282 AGCD01020012;XR_001233567 MODEL 10181337 protein-coding LOC106150310 small nuclear ribonucleoprotein E-like NW_004955471 4831727 4832005 - 106150310 AGCD01053090;XM_013522872 XP_013378326 MODEL 8914387 pseudo LOC102022654 translationally-controlled tumor protein pseudogene NW_004955402 29324286 29324804 - 102022654 AGCD01000741 MODEL 10270917 ncrna LOC106147757 uncharacterized LOC106147757 NW_004955410 28893150 28896909 + 106147757 AGCD01011265;AGCD01011266;GBDF01306320;XR_001232706 MODEL 8932291 protein-coding Ktn1 kinectin 1 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum (ortholog) NW_004955466 13664312 13747368 - 102010141 AGCD01051180;AGCD01051181;AGCD01051182;AGCD01051183;GBCB01002346;XM_005399233;XM_005399234;XM_013521982;XM_013521983;XM_013521984 XP_005399290;XP_005399291;XP_013377436;XP_013377437;XP_013377438 MODEL 8882174 pseudo LOC102020867 actin-related protein 2/3 complex subunit 3 pseudogene NW_004955623 105619 112426 + 102020867 AGCD01077410;AGCD01077411 MODEL 9005084 pseudo LOC102022299 protein odr-4 homolog NW_004955488 3218892 3220365 - 102022299 AGCD01059571 MODEL 8823101 pseudo LOC102029567 nuclear cap-binding protein subunit 2 pseudogene NW_004955562 1786104 1786568 - 102029567 AGCD01073997 MODEL 8746778 protein-coding Pi4k2a phosphatidylinositol 4-kinase type 2 alpha ENCODES a protein that exhibits 1-phosphatidylinositol 4-kinase activity (ortholog); AP-3 adaptor complex binding (ortholog); ATP binding (ortholog); INVOLVED IN basophil degranulation (ortholog); phosphatidylinositol biosynthetic process (ortholog); phosphatidylinositol phosphate biosynthetic process (ortholog); PARTICIPATES IN Wnt signaling, canonical pathway; ASSOCIATED WITH NEURODEVELOPMENTAL DISORDER WITH HYPERKINETIC MOVEMENTS, SEIZURES, AND STRUCTURAL BRAIN ABNORMALITIES (ortholog); FOUND IN BLOC-1 complex (ortholog); clathrin-sculpted vesicle (ortholog); cytoplasmic vesicle (ortholog) NW_004955507 3729947 3761703 + 102030102 AGCD01065633;AGCD01065634;AGCD01065635;GBCB01098339;GBDF01156561;XM_013506190;XM_013506191 XP_013361644;XP_013361645 MODEL 8712010 protein-coding LOC102013001 putative spermatogenesis-associated protein 31D3 NW_004955530 1751228 1756912 - 102013001 AGCD01069899;GBDF01052090;XM_013507542;XM_013507543;XM_013507544 XP_013362996;XP_013362997;XP_013362998 MODEL 8755782 ncrna LOC102024709 uncharacterized LOC102024709 NW_004955508 5873874 5910430 - 102024709 AGCD01065910;AGCD01065911;GBDF01075758;XR_264396 MODEL 8958866 protein-coding Tmem176b transmembrane protein 176B INVOLVED IN negative regulation of dendritic cell differentiation (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); long QT syndrome (ortholog) NW_004955491 5201832 5209117 - 102025132 AGCD01060474;GBCQ01145542;XM_005404793;XM_005404794 XP_005404850;XP_005404851 MODEL 10269994 ncrna LOC106146792 uncharacterized LOC106146792 NW_004955495 2688500 2691284 - 106146792 AGCD01061793;GBDF01179679;XR_001231353;XR_001231354 MODEL 10171684 ncrna LOC106148418 uncharacterized LOC106148418 NW_004955421 5101587 5124154 + 106148418 AGCD01021710;GBDF01119740;XR_001233841 MODEL 9040273 protein-coding Ntn3 netrin 3 ENCODES a protein that exhibits signaling receptor binding (ortholog); FOUND IN extracellular region (ortholog); Golgi apparatus (ortholog) NW_004955442 14838076 14840857 - 102010740 AGCD01037842;GBCE01183221;XM_013517935 XP_013373389 MODEL 8955744 protein-coding Gatd1 glutamine amidotransferase class 1 domain containing 1 NW_004955476 11350827 11354844 + 102011863 AGCD01055453;GBBH01185293;GBDF01127137;XM_013502980;XM_013502981 XP_013358434;XP_013358435 MODEL 8800987 protein-coding LOC102027819 uncharacterized LOC102027819 NW_004955458 3618181 3629517 - 102027819 AGCD01047327;AGCD01047328;GBBH01101296;XM_013520986;XR_001236469;XR_001236470;XR_001236471 XP_013376440 MODEL 8994392 protein-coding Slc38a8 solute carrier family 38 member 8 INVOLVED IN aspartate metabolic process (ortholog); neuron projection development (ortholog); optic nerve development (ortholog); ASSOCIATED WITH Foveal Hypoplasia (ortholog); foveal hypoplasia 2 (ortholog); genetic disease (ortholog) NW_004955564 233796 252565 + 102021608 AGCD01074192;AGCD01074193;GBDF01041455;XM_005413230 XP_005413287 MODEL 8936827 protein-coding LOC102005069 glycine N-acyltransferase-like protein Keg1 NW_004955511 3599452 3633026 - 102005069 AGCD01066468;AGCD01066469;GBCQ01010946;XM_005408044;XM_005408045;XM_005408046 XP_005408101;XP_005408102;XP_005408103 MODEL 8730107 pseudo LOC102007556 60S ribosomal protein L9 pseudogene NW_004955419 23050823 23052195 - 102007556 AGCD01020311 MODEL 8739323 protein-coding LOC102004709 uncharacterized LOC102004709 NW_004955482 1567935 1574274 + 102004709 AGCD01057221;GBDJ01033180;XM_005402995;XR_263820;XR_263821;XR_263822 XP_005403052 MODEL 616940636 mirna MIR652 microRNA 652 8986383 protein-coding LOC102017140 ras association domain-containing protein 6-like NW_004955502 7963552 7974545 - 102017140 AGCD01064472;AGCD01064473;AGCD01064474;AGCD01064475;XM_013505818 XP_013361272 MODEL 10394113 protein-coding LOC106147347 zinc finger protein 709-like NW_004955546 542240 568689 - 106147347 AGCD01071998;AGCD01071999;AGCD01072000;AGCD01072001;GBDF01229920;XM_013508371 XP_013363825 MODEL 8955270 protein-coding Gnl1 G protein nucleolar 1 INVOLVED IN DNA damage response (ortholog) NW_004955583 570573 578423 - 102016115 AGCD01075838;AGCD01075839;GBDI01171462;GBDI01171463;XM_005414308 XP_005414365 MODEL 10146777 ncrna LOC106149346 uncharacterized LOC106149346 NW_004955444 2826147 2841152 + 106149346 AGCD01038775;GBCE01067132;XR_001235486 MODEL 9041909 protein-coding Efcab6 EF-hand calcium binding domain 6 INVOLVED IN flagellated sperm motility (ortholog); ASSOCIATED WITH Asthenozoospermia (ortholog); prostate cancer (ortholog); Teratozoospermia (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955413 28569080 28783455 - 102018278 AGCD01014561;AGCD01014562;AGCD01014563;AGCD01014564;AGCD01014565;AGCD01014566;AGCD01014567;GBDF01009010;XM_005379444;XM_005379445 XP_005379501;XP_005379502 MODEL 10098878 ncrna LOC106149758 uncharacterized LOC106149758 NW_004955405 10281450 10286682 + 106149758 AGCD01004809;AGCD01004810;XR_001236124 MODEL 8869911 protein-coding Tsr2 TSR2 ribosome maturation factor ASSOCIATED WITH Diamond-Blackfan anemia 14 with mandibulofacial dysostosis (ortholog); Diamond-Blackfan anemia 15 with mandibulofacial dysostosis (ortholog) NW_004955475 1698926 1703404 + 102022384 AGCD01054758;GBCQ01101886;XM_005401522;XM_013502825 XP_005401579;XP_013358279 MODEL 8701022 protein-coding Yme1l1 YME1 like 1 ATPase ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent peptidase activity (ortholog); metalloendopeptidase activity (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to starvation (ortholog); mitochondrial protein catabolic process (ortholog); ASSOCIATED WITH 3-methylglutaconic aciduria (ortholog); dilated cardiomyopathy (ortholog); fundus dystrophy (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955429 2550611 2572472 - 102009090 AGCD01028430;GBDF01051277;GBDJ01017421;XM_013515518 XP_013370972 MODEL 8743226 ncrna LOC102022300 uncharacterized LOC102022300 NW_004955421 10315563 10318178 + 102022300 AGCD01021873;GBCQ01059920;XR_260792 MODEL 39131869 snrna U1 U1 spliceosomal RNA 8729266 protein-coding Gpr37l1 G protein-coupled receptor 37 like 1 ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); G protein-coupled receptor activity (ortholog); peptide binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); cellular response to reactive oxygen species (ortholog); negative regulation of astrocyte differentiation (ortholog); ASSOCIATED WITH amenorrhea (ortholog); FOUND IN plasma membrane (ortholog); signaling receptor complex (ortholog) NW_004955406 38214490 38223281 + 102022161 AGCD01006597;GBBH01193715;XM_005375203 XP_005375260 MODEL 10229339 ncrna LOC106146628 uncharacterized LOC106146628 NW_004955487 5570222 5575813 - 106146628 AGCD01059341;XR_001231157 MODEL 8917460 pseudo LOC102013409 tubulin beta-4B chain pseudogene NW_004955415 32953159 32960953 + 102013409 AGCD01016743;AGCD01016744 MODEL 8809252 pseudo LOC102016386 eukaryotic initiation factor 4A-I-like NW_004955419 15570893 15571641 - 102016386 AGCD01020083 MODEL 9064031 ncrna LOC102021596 uncharacterized LOC102021596 NW_004955541 3430941 3433438 - 102021596 AGCD01071448;GBBH01213905;XR_001232138 MODEL 8792890 pseudo LOC102004004 ATPase inhibitor, mitochondrial pseudogene NW_004955533 1286264 1287849 - 102004004 AGCD01070353 MODEL 8720553 ncrna LOC102016720 uncharacterized LOC102016720 NW_004955495 3352618 3356536 + 102016720 AGCD01061849;AGCD01061850;GBCQ01113516;XR_001231390;XR_001231391;XR_264142 MODEL 8779469 protein-coding LOC102021956 alpha-2-macroglobulin ENCODES a protein that exhibits brain-derived neurotrophic factor binding (ortholog); calcium-dependent protein binding (ortholog); endopeptidase inhibitor activity (ortholog); INVOLVED IN acute inflammatory response to antigenic stimulus (ortholog); acute-phase response (ortholog); embryonic liver development (ortholog); PARTICIPATES IN Alzheimer's disease pathway; immune response pathway; inflammatory response pathway; ASSOCIATED WITH otitis media; Otitis Media with Effusion; suppurative otitis media; FOUND IN extracellular region NW_004955413 6019457 6062366 + 102021956 AGCD01013700;AGCD01013701;AGCD01013702;AGCD01013703;GBDI01021440;XM_005378889 XP_005378946 MODEL 8768970 protein-coding Nelfb negative elongation factor complex member B ENCODES a protein that exhibits RNA polymerase inhibitor activity (ortholog); INVOLVED IN cell population proliferation (ortholog); negative regulation of stem cell differentiation (ortholog); negative regulation of transcription elongation by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; FOUND IN cytoplasm (ortholog); NELF complex (ortholog); nucleoplasm (ortholog) NW_004955513 5248190 5261018 + 102012791 AGCD01066964;GBDF01086073;XM_005408612 XP_005408669 MODEL 8776917 protein-coding Ikbkg inhibitor of nuclear factor kappa B kinase regulatory subunit gamma ENCODES a protein that exhibits identical protein binding (ortholog); K63-linked polyubiquitin modification-dependent protein binding (ortholog); linear polyubiquitin binding (ortholog); INVOLVED IN anoikis (ortholog); B cell homeostasis (ortholog); canonical NF-kappaB signal transduction (ortholog); PARTICIPATES IN FasL mediated signaling pathway; interleukin-1 signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH acute myocardial infarction (ortholog); Behcet's disease (ortholog); Bloch-Sulzberger syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); IkappaB kinase complex (ortholog) NW_004955580 1053823 1069802 + 102006084 AGCD01075642;AGCD01075643;GBDI01021108;XM_005414210;XM_005414211;XM_005414213;XM_005414214;XM_013509705;XM_013509706 XP_005414267;XP_005414268;XP_005414270;XP_005414271;XP_013365159;XP_013365160 MODEL 10072514 ncrna LOC106147613 uncharacterized LOC106147613 NW_004955597 239856 243766 - 106147613 AGCD01076548;GBBH01079800;XR_001232547 MODEL 8986950 protein-coding Scpep1 serine carboxypeptidase 1 ENCODES a protein that exhibits serine-type carboxypeptidase activity (ortholog); INVOLVED IN blood vessel diameter maintenance (ortholog); negative regulation of blood pressure (ortholog); ASSOCIATED WITH COVID-19 (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog) NW_004955451 5847371 5876286 - 102011933 AGCD01043182;AGCD01043183;AGCD01043184;GBCE01000239;XM_005394064 XP_005394121 MODEL 10200086 protein-coding LOC106147758 uncharacterized LOC106147758 NW_004955410 1508618 1530538 + 106147758 AGCD01010616;GBCE01039693;XM_013510487 XP_013365941 MODEL 8858489 protein-coding Hbq1 hemoglobin subunit theta 1 NW_004955442 17000811 17004033 - 102006290 AGCD01037931;GBBH01050436;XM_005391670;XM_005391671 XP_005391727;XP_005391728 MODEL 8773708 protein-coding Tspan9 tetraspanin 9 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN collagen-activated tyrosine kinase receptor signaling pathway (ortholog); mitocytosis (ortholog); neutrophil homeostasis (ortholog); FOUND IN extracellular matrix (ortholog); membrane (ortholog); migrasome (ortholog) NW_004955429 18696528 18772593 + 102026660 AGCD01028921;GBDF01307566;XM_005387133 XP_005387190 MODEL 8895184 protein-coding Lrrc36 leucine rich repeat containing 36 NW_004955484 9254049 9310033 - 102005597 AGCD01058413;AGCD01058414;GBDI01076538;XM_005403659;XM_013503895 XP_005403716;XP_013359349 MODEL 9028520 protein-coding Kxd1 KxDL motif containing 1 INVOLVED IN lysosome localization (ortholog); vesicle-mediated transport (ortholog); ASSOCIATED WITH Hermansky-Pudlak syndrome (ortholog); FOUND IN BLOC-1 complex (ortholog); BORC complex (ortholog) NW_004955524 3010997 3018309 - 102026252 AGCD01068849;AGCD01068850;GBBH01091261;XM_005409585;XM_005409586;XM_013507288 XP_005409642;XP_005409643;XP_013362742 MODEL 9060122 pseudo LOC102013004 L-lactate dehydrogenase A chain pseudogene NW_004955537 2130074 2131685 + 102013004 AGCD01070918;XR_264773 MODEL 10169576 ncrna LOC106148828 uncharacterized LOC106148828 NW_004955429 13673671 13677012 + 106148828 AGCD01028761;GBBH01135189;XR_001234536 MODEL 10330906 ncrna LOC106150166 uncharacterized LOC106150166 NW_004955466 415157 424652 + 106150166 AGCD01050660;GBDF01156522;XR_001236813 MODEL 9003422 protein-coding Pi4k2b phosphatidylinositol 4-kinase type 2 beta ENCODES a protein that exhibits 1-phosphatidylinositol 4-kinase activity (ortholog); INVOLVED IN phosphatidylinositol phosphate biosynthetic process (ortholog); ASSOCIATED WITH autistic disorder (ortholog); FOUND IN cytosol (ortholog); early endosome membrane (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955443 19728997 19760569 - 102023401 AGCD01038634;AGCD01038635;GBCB01040316;GBDF01006217;XM_005392044;XM_013518062 XP_005392101;XP_013373516 MODEL 10065020 ncrna LOC106146793 uncharacterized LOC106146793 NW_004955495 2682597 2688470 - 106146793 AGCD01061793;GBDF01079074;XR_001231355;XR_001231356 MODEL 8704693 protein-coding Ssh3 slingshot protein phosphatase 3 ASSOCIATED WITH intellectual disability (ortholog) NW_004955422 18149846 18158257 - 102023610 AGCD01022938;GBBH01118306;XM_005384351;XM_005384352;XM_005384353 XP_005384408;XP_005384409;XP_005384410 MODEL 10194784 ncrna LOC106146776 uncharacterized LOC106146776 NW_004955495 1166675 1183946 - 106146776 AGCD01061675;GBCB01118736;XR_001231338 MODEL 8751896 ncrna LOC102023015 uncharacterized LOC102023015 NW_004955465 3866841 3869578 + 102023015 AGCD01050394;GBDF01077342;XR_263234 MODEL 10315952 ncrna LOC106150311 uncharacterized LOC106150311 NW_004955471 6543221 6555015 - 106150311 AGCD01053127;GBDF01068368;XR_001237045 MODEL 8975972 pseudo LOC102005070 olfactory receptor 5D18-like NW_004955511 636613 637572 + 102005070 AGCD01066336 MODEL 8990177 pseudo LOC102017146 eukaryotic translation initiation factor 3 subunit C pseudogene NW_004955428 16522665 16525883 + 102017146 AGCD01028024 MODEL 8867077 protein-coding Ntn4 netrin 4 ENCODES a protein that exhibits laminin-1 binding (ortholog); INVOLVED IN neuron remodeling (ortholog); regulation of branching involved in salivary gland morphogenesis by extracellular matrix-epithelial cell signaling (ortholog); ASSOCIATED WITH prostate cancer (ortholog); FOUND IN basement membrane (ortholog) NW_004955405 32080022 32182225 - 102006307 AGCD01005326;AGCD01005327;AGCD01005328;GBDI01292870;GBDK01069539;XM_013518478 XP_013373932 MODEL 8737484 pseudo LOC102004015 N-formyl peptide receptor 2-like NW_004955558 701686 702721 - 102004015 AGCD01073385 MODEL 8765970 pseudo LOC102020868 growth factor receptor-bound protein 10-like NW_004955403 23021737 23022670 + 102020868 AGCD01002238 MODEL 8881813 pseudo LOC102006110 brain mitochondrial carrier protein 1 pseudogene NW_004955411 25443595 25445484 + 102006110 AGCD01012158 MODEL 8967388 ncrna LOC102008015 uncharacterized LOC102008015 NW_004955506 4275716 4276076 - 102008015 AGCD01065332;XR_264349 MODEL 8974748 protein-coding Gnl2 G protein nucleolar 2 PARTICIPATES IN ribosome biogenesis pathway; FOUND IN nucleolus (ortholog) NW_004955452 15376289 15401285 - 102012053 AGCD01044486;GBCQ01063721;XM_005395210 XP_005395267 MODEL 10090446 protein-coding Tmem177 transmembrane protein 177 FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955459 10068022 10070911 - 106146234 AGCD01048179;XM_013521061 XP_013376515 MODEL 10377263 ncrna LOC106148419 uncharacterized LOC106148419 NW_004955421 14080120 14092771 - 106148419 AGCD01021953;XR_001233842 MODEL 39131525 protein-coding YOD1 YOD1 deubiquitinase 10086302 ncrna LOC106148283 uncharacterized LOC106148283 NW_004955419 14177046 14181065 + 106148283 AGCD01020013;GBDF01261736;XR_001233569 MODEL 8794318 protein-coding Cap2 cyclase associated actin cytoskeleton regulatory protein 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN presynaptic actin cytoskeleton organization (ortholog); regulation of modification of postsynaptic actin cytoskeleton (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); Dilated Cardiomyopathy 2I (ortholog); hepatocellular carcinoma (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog); postsynaptic density (ortholog) NW_004955483 8484427 8602748 - 102023267 AGCD01057837;AGCD01057838;AGCD01057839;GBDI01292666;XM_005403406 XP_005403463 MODEL 8859452 pseudo LOC102013413 peptidyl-prolyl cis-trans isomerase-like 4 pseudogene NW_004955417 10686148 10688391 + 102013413 AGCD01018086 MODEL 10261108 ncrna LOC106148829 uncharacterized LOC106148829 NW_004955429 14963249 14970078 - 106148829 AGCD01028787;GBDF01146194;XR_001234538 MODEL 10284702 ncrna LOC106149495 uncharacterized LOC106149495 NW_004955447 2171041 2177245 + 106149495 AGCD01040532;AGCD01040533;GBDF01184732;XR_001235720 MODEL 9042228 protein-coding Tnrc18 trinucleotide repeat containing 18 ENCODES a protein that exhibits chromatin-protein adaptor activity (ortholog); histone H3K9me2/3 reader activity (ortholog); INVOLVED IN protein localization to chromatin (ortholog); transposable element silencing by heterochromatin formation (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytosol (ortholog) NW_004955460 10183836 10270626 - 102028832 AGCD01048575;AGCD01048576;GBBH01088705;GBDI01074607;XM_013521119;XM_013521120;XM_013521121;XM_013521122;XM_013521123;XM_013521124;XM_013521125 XP_013376573;XP_013376574;XP_013376575;XP_013376576;XP_013376577;XP_013376578;XP_013376579 MODEL 8959152 ncrna LOC102004713 uncharacterized LOC102004713 NW_004955485 7094407 7100426 - 102004713 AGCD01058634;GBDI01190651;XR_263916 MODEL 9061850 ncrna LOC102022657 uncharacterized LOC102022657 NW_004955403 4918680 4938377 - 102022657 AGCD01001800;AGCD01001801;GBDF01112630;XR_259157;XR_259158 MODEL 10315066 protein-coding LOC106149085 histone acetyltransferase KAT6B-like NW_004955437 17216946 17234293 - 106149085 AGCD01034736;AGCD01034737;AGCD01034738;GBDK01270131;XM_013516740 XP_013372194 MODEL 41410899 mirna MIR653 microRNA 653 8807542 protein-coding LOC102016389 olfactory receptor 4B1-like NW_004955422 316985 318321 + 102016389 AGCD01022404;XM_005383950 XP_005384007 MODEL 8958053 protein-coding Ssmem1 serine rich single-pass membrane protein 1 INVOLVED IN spermatogenesis (ortholog) NW_004955479 10864515 10875033 + 102014896 AGCD01056563;AGCD01056564;GBDF01049460;XM_005402430;XM_005402431;XM_005402432 XP_005402487;XP_005402488;XP_005402489 MODEL 8729836 protein-coding LOC102021959 major allergen I polypeptide chain 1-like NW_004955468 4185332 4186669 + 102021959 AGCD01051895;XM_013522295 XP_013377749 MODEL 10199379 ncrna LOC106150312 uncharacterized LOC106150312 NW_004955471 6810142 6811282 - 106150312 AGCD01053130;XR_001237046 MODEL 405822141 protein-coding SCPPPQ1 secretory calcium-binding phosphoprotein proline-glutamine rich 1 8893399 protein-coding LOC102029570 cytochrome P450 2A13-like NW_004955578 407942 420663 - 102029570 AGCD01075480;GBCB01029393;XM_005414006 XP_005414063 MODEL 10138652 ncrna LOC106149347 uncharacterized LOC106149347 NW_004955444 2822143 2828230 - 106149347 AGCD01038775;XR_001235487 MODEL 10213488 ncrna LOC106149759 uncharacterized LOC106149759 NW_004955405 29636576 29647620 - 106149759 AGCD01005256;GBDJ01122369;XR_001236129 MODEL 39131400 protein-coding NTN5 netrin 5 8806450 protein-coding Tsr3 TSR3 ribosome maturation factor ENCODES a protein that exhibits rRNA small subunit aminocarboxypropyltransferase activity (ortholog); transferase activity (ortholog); INVOLVED IN enzyme-directed rRNA pseudouridine synthesis (ortholog); ASSOCIATED WITH genetic disease (ortholog) NW_004955442 15881663 15884222 + 102007944 AGCD01037884;GBBH01118537;XM_005391578 XP_005391635 MODEL 8845910 pseudo LOC102022301 ubiquitin carboxyl-terminal hydrolase 44-like NW_004955489 6080515 6085343 - 102022301 AGCD01059957 MODEL 10322105 ncrna LOC106150167 uncharacterized LOC106150167 NW_004955466 6529762 6556627 + 106150167 AGCD01050928;GBCE01014182;XR_001236815;XR_001236816;XR_001236817;XR_001236818 MODEL 8926760 protein-coding LOC102013015 mastin-like NW_004955442 15945683 15947421 + 102013015 AGCD01037888;GBDF01098386;XM_013517711 XP_013373165 MODEL 8985544 protein-coding Slc38a9 solute carrier family 38 member 9 ENCODES a protein that exhibits amino acid transmembrane transporter activity (ortholog); cholesterol binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN amino acid transmembrane transport (ortholog); asparagine transport (ortholog); cellular response to amino acid stimulus (ortholog); ASSOCIATED WITH Liver Neoplasms (ortholog); FOUND IN FNIP-folliculin RagC/D GAP (ortholog); late endosome (ortholog); late endosome membrane (ortholog) NW_004955446 12042848 12132211 + 102016114 AGCD01040222;AGCD01040223;AGCD01040224;AGCD01040225;GBBH01113101;XM_005392695;XM_013518400;XM_013518401;XM_013518402;XM_013518403;XM_013518404 XP_005392752;XP_013373854;XP_013373855;XP_013373856;XP_013373857;XP_013373858 MODEL 10189135 protein-coding LOC106149624 collagen alpha-1(II) chain NW_004955451 2453189 2456881 + 106149624 AGCD01043009;GBCE01132903;XM_013519060 XP_013374514 MODEL 8736532 protein-coding LOC102016734 proteoglycan 3 NW_004955511 2414006 2418219 - 102016734 AGCD01066401;GBBH01227915;XM_005407993 XP_005408050 MODEL 10380778 protein-coding LOC106147348 zinc finger protein 709-like NW_004955546 705381 783566 - 106147348 AGCD01072016;AGCD01072017;AGCD01072018;AGCD01072019;AGCD01072020;AGCD01072021;AGCD01072022;AGCD01072023;AGCD01072024;GBCB01035604;XM_013508395;XM_013508396;XM_013508397;XM_013508398;XM_013508399;XM_013508400 XP_013363849;XP_013363850;XP_013363851;XP_013363852;XP_013363853;XP_013363854 MODEL 10075236 protein-coding LOC106147759 translation initiation factor IF-2-like NW_004955410 8247128 8247486 - 106147759 AGCD01010741;GBBH01126944;GBCB01090148;XM_013510489 XP_013365943 MODEL 8818196 protein-coding Nelfcd negative elongation factor complex member C/D ENCODES a protein that exhibits RNA polymerase inhibitor activity (ortholog); INVOLVED IN negative regulation of transcription elongation by RNA polymerase II (ortholog); transcription pausing by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; ASSOCIATED WITH colon cancer (ortholog); colorectal cancer (ortholog); prostate cancer (ortholog); FOUND IN NELF complex (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955445 597826 610134 - 102019750 AGCD01039320;GBCE01170940;XM_013518266;XM_013518267 XP_013373720;XP_013373721 MODEL 8826422 protein-coding Efcab7 EF-hand calcium binding domain 7 INVOLVED IN positive regulation of protein import into nucleus (ortholog); positive regulation of protein localization to ciliary membrane (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Postaxial Polydactyly (ortholog); FOUND IN ciliary membrane (ortholog); cytoplasmic side of plasma membrane (ortholog); plasma membrane protein complex (ortholog) NW_004955423 26473310 26510704 - 102004495 AGCD01024097;GBCB01077144;XM_005385327;XM_005385328;XM_005385329;XM_005385330 XP_005385384;XP_005385385;XP_005385386;XP_005385387 MODEL 9022312 pseudo LOC102020869 bcl-2-associated transcription factor 1-like NW_004955451 8747701 8750177 + 102020869 AGCD01043278 MODEL 10153353 ncrna LOC106146629 uncharacterized LOC106146629 NW_004955487 9634771 9643069 + 106146629 AGCD01059461;GBBH01138884;XR_001231159 MODEL 8935097 protein-coding Hbs1l HBS1 like translational GTPase INVOLVED IN nuclear-transcribed mRNA catabolic process, no-go decay (ortholog); rescue of stalled cytosolic ribosome (ortholog); ribosome disassembly (ortholog); PARTICIPATES IN translation termination pathway; ASSOCIATED WITH beta thalassemia (ortholog); FOUND IN cytoplasm (ortholog); cytosolic ribosome (ortholog); Dom34-Hbs1 complex (ortholog) NW_004955439 1684466 1762314 + 102003488 AGCD01035625;AGCD01035626;AGCD01035627;GBDF01082932;XM_005390498;XM_013517383 XP_005390555;XP_013372837 MODEL 8934381 protein-coding Gpr39 G protein-coupled receptor 39 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adult feeding behavior (ortholog); cellular response to zinc ion (ortholog); cholesterol homeostasis (ortholog); FOUND IN plasma membrane (ortholog) NW_004955440 46648 235644 + 102028580 AGCD01036156;AGCD01036157;AGCD01036158;AGCD01036159;GBDJ01115961;XM_005390734;XM_005390735 XP_005390791;XP_005390792 MODEL 8765178 protein-coding LOC102020133 39S ribosomal protein L47, mitochondrial-like NW_004955423 1553573 1554480 + 102020133 AGCD01023442;XM_005385038 XP_005385095 MODEL 10117666 ncrna LOC106149760 uncharacterized LOC106149760 NW_004955453 15620271 15868385 + 106149760 AGCD01044894;AGCD01044895;AGCD01044896;GBCE01018355;XR_001236127;XR_001236128 MODEL 8938738 protein-coding LOC102008016 scavenger receptor cysteine-rich type 1 protein M130-like NW_004955507 6508836 6526813 - 102008016 AGCD01065720;AGCD01065721;AGCD01065722;GBDI01367183;XM_013506149 XP_013361603 MODEL 9010206 protein-coding Efcab8 EF-hand calcium binding domain 8 NW_004955422 28269996 28337345 - 102005054 AGCD01023345;GBDF01299149;XM_013514341;XM_013514342;XM_013514343;XM_013514344 XP_013369795;XP_013369796;XP_013369797;XP_013369798 MODEL 8866730 protein-coding Pi4ka phosphatidylinositol 4-kinase alpha ENCODES a protein that exhibits 1-phosphatidylinositol 4-kinase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); host-mediated perturbation of viral process (ortholog); myelination in peripheral nervous system (ortholog); PARTICIPATES IN inositol metabolic pathway; phosphoinositide metabolic pathway; ASSOCIATED WITH Gastrointestinal Defects and Immunodeficiency Syndrome 2 (ortholog); genetic disease (ortholog); hereditary spastic paraplegia 84 (ortholog); FOUND IN cytoplasm (ortholog); Golgi-associated vesicle membrane (ortholog); plasma membrane (ortholog) NW_004955442 19446955 19594790 + 102025628 AGCD01038060;AGCD01038061;AGCD01038062;AGCD01038063;AGCD01038064;AGCD01038065;AGCD01038066;AGCD01081646;GBDK01126857;XM_005391836;XM_005391837 XP_005391893;XP_005391894 MODEL 10220358 ncrna LOC106148284 uncharacterized LOC106148284 NW_004955419 15535775 15540507 - 106148284 AGCD01020083;GBDF01077930;XR_001233570 MODEL 9027761 protein-coding Tmem178a transmembrane protein 178A INVOLVED IN negative regulation of osteoclast differentiation (ortholog); regulation of cytosolic calcium ion concentration (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955441 7296200 7309556 + 102014180 AGCD01036957;AGCD01036958;GBCQ01152738;XM_013517625 XP_013373079 MODEL 8924439 pseudo LOC102005074 ferritin heavy chain-like NW_004955515 5069307 5090074 - 102005074 AGCD01067337 MODEL 8708057 protein-coding LOC102022658 conserved oligomeric Golgi complex subunit 1-like NW_004955716 2740 4643 - 102022658 AGCD01078165;GBDJ01020819;XM_005415076 XP_005415133 MODEL 9026206 protein-coding LOC102017147 vomeronasal type-1 receptor 90-like NW_004955429 12324110 12325018 - 102017147 AGCD01028713;XM_005387245 XP_005387302 MODEL 9034251 protein-coding Ikzf1 IKAROS family zinc finger 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); B cell differentiation (ortholog); erythrocyte differentiation (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); B-lymphoblastic leukemia/lymphoma (ortholog); chronic myelogenous leukemia, BCR-ABL1 positive (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); pericentric heterochromatin (ortholog) NW_004955456 3617988 3721791 - 102029707 AGCD01046278;AGCD01046279;AGCD01046280;GBDJ01115764;XM_005396609;XM_005396610;XM_005396617;XM_013520610;XM_013520611;XM_013520612;XM_013520613;XM_013520614;XM_013520615;XM_013520616;XM_013520617;XM_013520618 XP_005396666;XP_005396667;XP_005396674;XP_013376064;XP_013376065;XP_013376066;XP_013376067;XP_013376068;XP_013376069;XP_013376070;XP_013376071;XP_013376072 MODEL 10329839 pseudo LOC106147614 activator of basal transcription 1 pseudogene NW_004955597 297480 298880 + 106147614 AGCD01076554 MODEL 8890981 protein-coding Tnrc6a trinucleotide repeat containing adaptor 6A INVOLVED IN cellular response to starvation (ortholog); endoderm development (ortholog); miRNA-mediated gene silencing by inhibition of translation (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH familial adult myoclonic epilepsy 6 (ortholog); Myoclonic Epilepsies (ortholog); FOUND IN P-body (ortholog); RISC complex (ortholog) NW_004955493 3057035 3243668 + 102025809 AGCD01060978;AGCD01060979;AGCD01060980;AGCD01060981;AGCD01060982;AGCD01060983;GBDF01014716;XM_005405109;XM_005405110;XM_005405111;XM_013504798;XM_013504799;XM_013504800;XM_013504801;XM_013504802;XM_013504803 XP_005405166;XP_005405167;XP_005405168;XP_013360252;XP_013360253;XP_013360254;XP_013360255;XP_013360256;XP_013360257 MODEL 41410902 mirna MIR654 microRNA 654 39131875 snrna U1 U1 spliceosomal RNA 8923153 protein-coding Efcab9 EF-hand calcium binding domain 9 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium ion sensor activity (ortholog); INVOLVED IN flagellated sperm motility (ortholog); sperm capacitation (ortholog); spermatogenesis (ortholog); FOUND IN CatSper complex (ortholog); cytoplasm (ortholog); sperm principal piece (ortholog) NW_004955408 24987401 24993284 + 102025216 AGCD01008627;GBDF01114797;XM_005376337 XP_005376394 MODEL 8908319 ncrna LOC102007558 uncharacterized LOC102007558 NW_004955420 29057445 29063697 + 102007558 AGCD01021493;GBDF01157337;XR_001233702;XR_260770 MODEL 9024315 protein-coding Lrrc38 leucine rich repeat containing 38 ENCODES a protein that exhibits potassium channel activator activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN positive regulation of voltage-gated potassium channel activity (ortholog); potassium ion transmembrane transport (ortholog); FOUND IN voltage-gated potassium channel complex (ortholog) NW_004955527 4265027 4288222 + 102021040 AGCD01069501;AGCD01069502;GBBH01135094;GBCB01125691;XM_013507425 XP_013362879 MODEL 8924479 protein-coding LOC102006112 olfactory receptor 147-like NW_004955412 25143673 25144628 - 102006112 AGCD01013136;XM_005378416 XP_005378473 MODEL 8842883 protein-coding Gatd3 glutamine amidotransferase class 1 domain containing 3 ASSOCIATED WITH autistic disorder (ortholog); FOUND IN mitochondrion (ortholog) NW_004955407 41247749 41255369 - 102023005 AGCD01007862;AGCD01007863;GBBH01031990;GBDI01008445;XM_013505403 XP_013360857 MODEL 8963092 protein-coding LOC102029581 membrane primary amine oxidase-like NW_004955451 16659688 16661681 + 102029581 AGCD01043697;GBDJ01200551;XM_013519130 XP_013374584 MODEL 8864397 protein-coding Gnl3 G protein nucleolar 3 ENCODES a protein that exhibits GTP binding (ortholog); mRNA 5'-UTR binding (ortholog); INVOLVED IN positive regulation of miRNA transcription (ortholog); positive regulation of protein localization to chromosome, telomeric region (ortholog); positive regulation of protein sumoylation (ortholog); FOUND IN chromosome (ortholog); nuclear body (ortholog); nucleolus (ortholog) NW_004955430 2675477 2678113 + 102024599 AGCD01029173;AGCD01029174;GBDJ01230820;GBDJ01230840;XM_013515591 XP_013371045 MODEL 10077060 protein-coding LOC106148420 vegetative cell wall protein gp1-like NW_004955403 45421955 45423243 + 106148420 AGCD01002815;GBDK01204631;XM_013513665 XP_013369119 MODEL 8751901 protein-coding LOC102023016 olfactory receptor 148-like NW_004955412 24774653 24775579 + 102023016 AGCD01013125;XM_005378636 XP_005378693 MODEL 8887143 protein-coding Ypel1 yippee like 1 ASSOCIATED WITH COVID-19 (ortholog) NW_004955442 17400655 17423896 + 102013764 AGCD01037953;AGCD01037954;AGCD01037955;GBDF01006579;GBDF01006583;XM_013517872;XM_013517873;XM_013517874 XP_013373326;XP_013373327;XP_013373328 MODEL 10208993 ncrna LOC106148830 uncharacterized LOC106148830 NW_004955429 10872981 10878250 - 106148830 AGCD01028683;XR_001234539;XR_001234540 MODEL 10198119 ncrna LOC106149496 uncharacterized LOC106149496 NW_004955447 15568529 15575669 + 106149496 AGCD01041060;GBDF01188108;XR_001235721 MODEL 8912012 ncrna LOC102013017 uncharacterized LOC102013017 NW_004955444 2369111 2395806 - 102013017 AGCD01038759;AGCD01038760;AGCD01038761;GBDJ01063177;XR_001235512;XR_001235513;XR_001235514 MODEL 9020990 protein-coding Ikzf2 IKAROS family zinc finger 2 ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); identical protein binding (ortholog); INVOLVED IN cochlear outer hair cell electromotile response (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); sensory perception of sound (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); adult T-cell leukemia/lymphoma (ortholog); COVID-19 (ortholog); FOUND IN nucleus (ortholog) NW_004955457 2608892 2763036 + 102023666 AGCD01046748;AGCD01046749;GBBH01017109;XM_005396928;XM_005396929;XM_005396930;XM_005396932;XM_013520762;XM_013520763;XM_013520764;XM_013520765;XM_013520766;XM_013520767;XM_013520768;XM_013520769;XM_013520770 XP_005396985;XP_005396986;XP_005396987;XP_005396989;XP_013376216;XP_013376217;XP_013376218;XP_013376219;XP_013376220;XP_013376221;XP_013376222;XP_013376223;XP_013376224 MODEL 10296311 ncrna LOC106149761 uncharacterized LOC106149761 NW_004955453 15899890 15921416 + 106149761 AGCD01044897;GBDI01037446;XR_001236130 MODEL 8961290 protein-coding LOC102013416 butyrophilin subfamily 2 member A2 NW_004955483 413795 498359 - 102013416 AGCD01057609;AGCD01057610;AGCD01057611;AGCD01057612;AGCD01057613;AGCD01057614;AGCD01057615;AGCD01057616;AGCD01057617;AGCD01057618;AGCD01057619;GBDJ01002979;XM_005403285;XM_013503774;XM_013503775;XM_013503776;XM_013503777;XM_013503779;XM_013503780;XM_013503781 XP_005403342;XP_013359228;XP_013359229;XP_013359230;XP_013359231;XP_013359233;XP_013359234;XP_013359235 MODEL 8942912 protein-coding LOC102004714 potassium voltage-gated channel subfamily F member 1 NW_004955487 5789494 5793301 + 102004714 AGCD01059347;XM_005404422 XP_005404479 MODEL 9056604 protein-coding LOC102016392 zinc finger protein 699-like NW_004955495 356991 361711 + 102016392 AGCD01061625;GBCE01013017;GBDF01253415;XM_013505078 XP_013360532 MODEL 8966312 protein-coding Scrg1 stimulator of chondrogenesis 1 INVOLVED IN mesenchymal stem cell proliferation (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); neuron projection terminus (ortholog) NW_004955403 33599197 33626095 + 102025072 AGCD01002457;GBDI01141301;XM_005373540 XP_005373597 MODEL 8904957 protein-coding Ssna1 SS nuclear autoantigen 1 ENCODES a protein that exhibits identical protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN axon arborization (ortholog); axon extension (ortholog); axonogenesis (ortholog); FOUND IN axon (ortholog); axoneme (ortholog); centriole (ortholog) NW_004955513 5194308 5195721 + 102004413 AGCD01066961;GBCQ01066502;XM_005408581 XP_005408638 MODEL 8878107 protein-coding LOC102016735 uncharacterized LOC102016735 NW_004955511 1249319 1283016 + 102016735 AGCD01066361;AGCD01066362;XM_013506369 XP_013361823 MODEL 10279207 protein-coding LOC106150314 translation initiation factor IF-2-like NW_004955471 5044368 5044788 - 106150314 AGCD01053094;GBBH01058056;GBCE01106806;XM_013522881 XP_013378335 MODEL 10227151 ncrna LOC106146794 uncharacterized LOC106146794 NW_004955495 2793449 2795211 - 106146794 AGCD01061799;GBBH01147244;XR_001231357 MODEL 10176916 ncrna LOC106146779 uncharacterized LOC106146779 NW_004955495 2237790 2239953 - 106146779 AGCD01061756;AGCD01061757;GBCE01004529;XR_001231342 MODEL 9019535 protein-coding Ntn5 netrin 5 INVOLVED IN neurogenesis (ortholog) NW_004955559 1892982 1901759 + 102021055 AGCD01073678;AGCD01073679;AGCD01073680;GBBH01020916;GBBH01098419;XM_013508995 XP_013364449 MODEL 8709512 protein-coding LOC102020870 magnesium transporter MRS2 homolog, mitochondrial-like NW_004955694 5431 7611 + 102020870 AGCD01078077;GBBH01208983;GBDI01228450;XM_005415072 XP_005415129 MODEL 8943252 protein-coding Tssc4 tumor suppressing subtransferable candidate 4 ENCODES a protein that exhibits molecular sequestering activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN spliceosomal snRNP assembly (ortholog); spliceosomal tri-snRNP complex assembly (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); U5 snRNP (ortholog) NW_004955422 14175271 14178991 + 102014579 AGCD01022855;GBDF01024714;XM_013514301;XM_013514302 XP_013369755;XP_013369756 MODEL 9005114 ncrna LOC102024710 uncharacterized LOC102024710 NW_004955429 22551477 22563361 - 102024710 AGCD01029030;GBDI01287282;XR_261393 MODEL 8877694 protein-coding Capg capping actin protein, gelsolin like ENCODES a protein that exhibits protein domain specific binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN cellular response to type II interferon (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN centriole (ortholog); cytoplasm (ortholog); Flemming body (ortholog) NW_004955424 2064672 2080192 + 102003781 AGCD01024262;GBCE01000802;XM_005385432;XM_005385433;XM_005385434;XM_005385435 XP_005385489;XP_005385490;XP_005385491;XP_005385492 MODEL 10376598 ncrna LOC106149086 uncharacterized LOC106149086 NW_004955402 5010458 5012116 - 106149086 AGCD01000129;GBCQ01166388;XR_001235039 MODEL 8861288 ncrna LOC102004017 uncharacterized LOC102004017 NW_004955444 18696740 18734262 + 102004017 AGCD01039250;AGCD01039251;AGCD01039252;GBBH01146836;XR_001235489;XR_262282 MODEL 8941435 protein-coding Lrrc39 leucine rich repeat containing 39 NW_004955435 4900976 4961310 - 102003902 AGCD01032861;AGCD01032862;AGCD01032863;AGCD01032864;AGCD01032865;AGCD01032866;GBBH01082390;XM_005388794;XM_013516440 XP_005388851;XP_013371894 MODEL 8869137 protein-coding Slc39a1 solute carrier family 39 member 1 ENCODES a protein that exhibits signaling receptor binding (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN embryonic cranial skeleton morphogenesis (ortholog); in utero embryonic development (ortholog); limb development (ortholog); ASSOCIATED WITH Prostatic Neoplasms (ortholog); respiratory allergy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955545 556210 559732 - 102024613 AGCD01071800;GBDK01075053;XM_005411458;XM_013508228 XP_005411515;XP_013363682 MODEL 8759728 protein-coding Tspear thrombospondin type laminin G domain and EAR repeats INVOLVED IN hair cycle process (ortholog); Notch signaling pathway (ortholog); regulation of Notch signaling pathway (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness 98 (ortholog); ectodermal dysplasia 14 (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog); ciliary membrane (ortholog); stereocilium (ortholog) NW_004955407 41513538 41566931 - 102009147 AGCD01007870;GBDJ01386456;XM_013506099 XP_013361553 MODEL 10079117 pseudo LOC106147350 small ubiquitin-related modifier 2 pseudogene NW_004955546 759456 762895 + 106147350 AGCD01072021 MODEL 8725972 ncrna LOC102005075 uncharacterized LOC102005075 NW_004955433 12925114 12937990 - 102005075 AGCD01031673;XR_261590 MODEL 10263844 ncrna LOC106149349 uncharacterized LOC106149349 NW_004955444 14525224 14546046 + 106149349 AGCD01039125;GBBH01190307;XR_001235488 MODEL 9031971 protein-coding LOC102022660 cilia- and flagella-associated protein 43-like NW_004955896 7887 11670 - 102022660 AGCD01078608;GBBH01035019;XM_013510203 XP_013365657 MODEL 8797486 protein-coding Nelfe negative elongation factor complex member E ENCODES a protein that exhibits chromatin binding (ortholog); mRNA binding (ortholog); RNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); negative regulation of transcription elongation by RNA polymerase II (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); PARTICIPATES IN RNA polymerase II transcription elongation pathway; FOUND IN chromatin (ortholog); chromosome (ortholog); NELF complex (ortholog) NW_004955437 467018 473084 - 102006071 AGCD01034137;GBDF01128156;XM_005389401 XP_005389458 MODEL 8867094 protein-coding Tnrc6b trinucleotide repeat containing adaptor 6B INVOLVED IN miRNA-mediated gene silencing by inhibition of translation (ortholog); positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (ortholog); positive regulation of nuclear-transcribed mRNA poly(A) tail shortening (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Developmental Disabilities (ortholog); Developmental Disease (ortholog) NW_004955413 25820428 26060681 + 102007325 AGCD01014414;AGCD01014415;AGCD01014416;AGCD01014417;AGCD01014418;AGCD01014419;AGCD01014420;AGCD01014421;AGCD01014422;GBDF01248877;XM_005379308;XM_013511418;XM_013511419;XM_013511420 XP_005379365;XP_013366872;XP_013366873;XP_013366874 MODEL 9067650 protein-coding LOC102020138 uncharacterized LOC102020138 NW_004955499 8106996 8114025 + 102020138 AGCD01063616;GBDF01144920;XM_005406547 XP_005406604 MODEL 9030226 protein-coding Hcar1 hydroxycarboxylic acid receptor 1 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); negative regulation of lipid catabolic process (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog) NW_004955482 5998796 6002093 + 102028194 AGCD01057363;GBDK01125244;XM_005403075 XP_005403132 MODEL 8871697 protein-coding Scrib scribble planar cell polarity protein ENCODES a protein that exhibits signaling adaptor activity (ortholog); INVOLVED IN activation of GTPase activity (ortholog); apoptotic process involved in morphogenesis (ortholog); astrocyte cell migration (ortholog); PARTICIPATES IN Wnt signaling, the planar cell polarity pathway; ASSOCIATED WITH microcephaly (ortholog); neural tube defect (ortholog); FOUND IN adherens junction (ortholog); anchoring junction (ortholog); basolateral plasma membrane (ortholog) NW_004955454 2461526 2482734 - 102023554 AGCD01045021;AGCD01045022;GBBH01187694;GBCQ01067678;XM_013520053 XP_013375507 MODEL 9053423 protein-coding LOC102008017 olfactory receptor 5M3-like NW_004955511 1648423 1649355 - 102008017 AGCD01066377;XM_005407969 XP_005408026 MODEL 8785343 protein-coding LOC102023020 sodium-dependent multivitamin transporter-like NW_004955469 9131732 9133911 - 102023020 AGCD01052491;AGCD01052492;GBCQ01139319;XM_005400465;XM_005400466 XP_005400522;XP_005400523 MODEL 10386013 protein-coding LOC106149625 translation initiation factor IF-2-like NW_004955451 12133089 12143564 - 106149625 AGCD01043375;AGCD01043376;GBDJ01336703;XM_013519065 XP_013374519 MODEL 8941077 protein-coding LOC102021961 olfactory receptor 51A4-like NW_004955414 20597523 20619093 - 102021961 AGCD01015382;AGCD01015383;AGCD01015384;XM_005380063 XP_005380120 MODEL 10355918 ncrna LOC106149497 uncharacterized LOC106149497 NW_004955447 14036748 14056556 - 106149497 AGCD01040978;AGCD01040979;GBDF01251067;XR_001235722 MODEL 8822182 ncrna LOC102024711 uncharacterized LOC102024711 NW_004955430 7926384 7937421 + 102024711 AGCD01029378;GBDF01306876;XR_261422 MODEL 10213283 protein-coding LOC106147760 translation initiation factor IF-2-like NW_004955410 11188580 11200638 - 106147760 AGCD01010812;AGCD01010813;GBCE01152962;GBDJ01280077;XM_013510491 XP_013365945 MODEL 8927276 ncrna LOC102004716 uncharacterized LOC102004716 NW_004955421 23128250 23159410 + 102004716 AGCD01022173;GBDF01053857;XR_001233869;XR_260817 MODEL 8960987 protein-coding Hcar2 hydroxycarboxylic acid receptor 2 ENCODES a protein that exhibits nicotinic acid receptor activity (ortholog); INVOLVED IN negative regulation of lipid catabolic process (ortholog); neutrophil apoptotic process (ortholog); positive regulation of adiponectin secretion (ortholog); ASSOCIATED WITH Flushing (ortholog); psoriasis (ortholog); schizophrenia (ortholog); FOUND IN cell junction (ortholog); plasma membrane (ortholog) NW_004955482 6007307 6009353 + 102028861 AGCD01057364;GBBH01173042;XM_005415327 XP_005415384 MODEL 8735812 pseudo LOC102017150 transcription factor Sp1 pseudogene NW_004955431 16457241 16462926 - 102017150 AGCD01030378 MODEL 8796304 pseudo LOC102016394 YEATS domain-containing protein 4 pseudogene NW_004955423 524127 524634 - 102016394 AGCD01023414;XM_005385348 MODEL 10185758 ncrna LOC106147615 uncharacterized LOC106147615 NW_004955598 518688 566025 + 106147615 AGCD01076599;AGCD01076600;GBCB01112210;XR_001232549 MODEL 39131880 snrna U1 U1 spliceosomal RNA 10106606 protein-coding LOC106149353 basic proline-rich protein-like NW_004955444 1141894 1142430 + 106149353 AGCD01038708;GBDJ01266046;XM_013518134 XP_013373588 MODEL 9067337 protein-coding LOC102006113 beta-galactosidase-1-like protein 3 NW_004955412 35224061 35251279 + 102006113 AGCD01013407;GBDF01102556;XM_013510984 XP_013366438 MODEL 8852868 protein-coding Tspo translocator protein ENCODES a protein that exhibits androgen binding (ortholog); benzodiazepine receptor activity (ortholog); cholesterol transfer activity (ortholog); INVOLVED IN adrenal gland development (ortholog); behavioral response to pain (ortholog); C21-steroid hormone biosynthetic process (ortholog); PARTICIPATES IN heme biosynthetic pathway; ASSOCIATED WITH cholesterol ester storage disease (ortholog); COVID-19 (ortholog); End Stage Liver Disease (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955413 28309105 28315075 + 102016254 AGCD01014556;GBDK01018713;XM_005379436;XM_005379437;XM_005379438 XP_005379493;XP_005379494;XP_005379495 MODEL 10109534 ncrna LOC106150315 uncharacterized LOC106150315 NW_004955471 5014497 5024132 - 106150315 AGCD01053094;XR_001237048 MODEL 8917369 protein-coding Sspn sarcospan ENCODES a protein that exhibits protein-containing complex binding (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN plasma membrane (ortholog); sarcolemma (ortholog); transport vesicle (ortholog) NW_004955413 21174242 21212813 + 102004591 AGCD01014247;AGCD01014248;GBCB01003015;XM_013511398 XP_013366852 MODEL 9032798 pseudo LOC102029583 elongation factor 1-alpha 1 pseudogene NW_004955404 44617821 44619206 - 102029583 AGCD01004425 MODEL 8868948 protein-coding Gpr4 G protein-coupled receptor 4 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); angiogenesis involved in wound healing (ortholog); cellular response to acidic pH (ortholog); FOUND IN plasma membrane (ortholog) NW_004955574 85619 87928 - 102014400 AGCD01075084;GBDK01306170;XM_005413788 XP_005413845 MODEL 10107297 ncrna LOC106148421 uncharacterized LOC106148421 NW_004955421 22481998 22485731 - 106148421 AGCD01022137;GBDF01002950;XR_001233843 MODEL 10114079 protein-coding LOC106148285 basic proline-rich protein-like NW_004955419 15143333 15143928 + 106148285 AGCD01020060;GBDK01179448;XM_013513140 XP_013368594 MODEL 8860313 protein-coding Gnl3l G protein nucleolar 3 like INVOLVED IN negative regulation of protein sumoylation (ortholog); negative regulation of protein ubiquitination (ortholog); negative regulation of telomere maintenance via telomerase (ortholog); FOUND IN nucleolus (ortholog); telomerase holoenzyme complex (ortholog) NW_004955475 1792268 1849601 + 102022913 AGCD01054758;AGCD01054759;AGCD01054760;AGCD01054761;AGCD01054762;AGCD01054763;GBCQ01065541;XM_005401525;XM_013502824 XP_005401582;XP_013358278 MODEL 8879653 protein-coding Tmem178b transmembrane protein 178B NW_004955494 2081953 2442845 - 102016928 AGCD01061434;AGCD01061435;AGCD01061436;AGCD01061437;GBBH01203226;XM_005405409 XP_005405466 MODEL 10277542 ncrna LOC106148831 uncharacterized LOC106148831 NW_004955429 22535553 22539010 - 106148831 AGCD01029030;GBCB01012466;XR_001234541;XR_001234542 MODEL 10264002 ncrna LOC106149762 uncharacterized LOC106149762 NW_004955453 12249591 12285616 + 106149762 AGCD01044829;AGCD01044830;GBBH01170846;XR_001236131;XR_001236132 MODEL 151707873 mirna MIR665 microRNA 665 8971412 protein-coding Ikzf3 IKAROS family zinc finger 3 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); histone deacetylase binding (ortholog); identical protein binding (ortholog); INVOLVED IN B cell differentiation (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); regulation of apoptotic process (ortholog); PARTICIPATES IN interleukin-2 signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); asthma (ortholog); atherosclerosis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955451 14483669 14571108 - 102003825 AGCD01043556;AGCD01043557;AGCD01043558;GBDF01181093;XM_013519415;XM_013519416;XM_013519417;XM_013519418 XP_013374869;XP_013374870;XP_013374871;XP_013374872 MODEL 8872726 protein-coding LOC102004019 eppin NW_004955445 11687818 11693955 + 102004019 AGCD01039713;GBDF01009129;XM_005392422 XP_005392479 MODEL 10170964 protein-coding LOC106149498 skin secretory protein xP2-like NW_004955447 17910172 17910701 + 106149498 AGCD01041146;GBBH01028588;XM_013518522 XP_013373976 MODEL 10085694 ncrna LOC106147351 uncharacterized LOC106147351 NW_004955546 1417500 1426294 - 106147351 AGCD01072059;AGCD01072060;AGCD01072061;AGCD01072062;GBDF01237850;XR_001232207 MODEL 10205557 ncrna LOC106146780 uncharacterized LOC106146780 NW_004955495 2318680 2325785 + 106146780 AGCD01061766;GBBH01228930;XR_001231344;XR_001231345 MODEL 8883302 protein-coding LOC102022662 defensin-5-like NW_004955403 53801771 53803475 + 102022662 AGCD01003074;GBDF01286772;XM_005373914 XP_005373971 MODEL 8733057 protein-coding Tssk2 testis specific serine kinase 2 ENCODES a protein that exhibits magnesium ion binding (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN protein autophosphorylation (ortholog); spermatid development (ortholog); FOUND IN acrosomal vesicle (ortholog); centriole (ortholog); cytoplasm (ortholog) NW_004955442 18846491 18847485 - 102012906 AGCD01038022;GBDF01236314;XM_005415367 XP_005415424 MODEL 8773794 protein-coding Pi4kb phosphatidylinositol 4-kinase beta ENCODES a protein that exhibits 1-phosphatidylinositol 4-kinase activity (ortholog); 14-3-3 protein binding (ortholog); INVOLVED IN inner ear development (ortholog); lysosome organization (ortholog); phosphatidylinositol phosphate biosynthetic process (ortholog); ASSOCIATED WITH autosomal dominant nonsyndromic deafness 87 (ortholog); Coronavirus infectious disease (ortholog); severe acute respiratory syndrome (ortholog); FOUND IN cytoplasmic side of trans-Golgi network membrane (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955588 648180 679374 - 102030020 AGCD01076118;GBCC01025771;XM_005414515;XM_005414516;XM_013509921;XM_013509922 XP_005414572;XP_005414573;XP_013365375;XP_013365376 MODEL 8805796 protein-coding LOC102013019 nuclear factor interleukin-3-regulated protein NW_004955563 825025 844211 - 102013019 AGCD01074090;AGCD01074091;XM_005413205 XP_005413262 MODEL 8917533 protein-coding Ntng1 netrin G1 ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); cell-cell adhesion mediator activity (ortholog); INVOLVED IN axonogenesis (ortholog); modulation of chemical synaptic transmission (ortholog); regulation of neuron migration (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); Colorectal Neoplasms (ortholog); schizophrenia (ortholog); FOUND IN glutamatergic synapse (ortholog); plasma membrane (ortholog); presynaptic active zone membrane (ortholog) NW_004955435 10923557 11247091 + 102015759 AGCD01033104;AGCD01033105;AGCD01033106;AGCD01033107;AGCD01033108;AGCD01033109;AGCD01033110;AGCD01033111;AGCD01033112;GBCQ01103167;XM_005388820;XM_005388823;XM_005388824;XM_005388825 XP_005388877;XP_005388880;XP_005388881;XP_005388882 MODEL 9051385 protein-coding Ypel2 yippee like 2 NW_004955451 3644951 3698658 - 102015265 AGCD01043066;AGCD01043067;GBCE01085790;XM_005393987 XP_005394044 MODEL 8839929 protein-coding Tnrc6c trinucleotide repeat containing adaptor 6C INVOLVED IN embryonic hemopoiesis (ortholog); embryonic organ development (ortholog); endoderm development (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH COVID-19 (ortholog); intellectual disability (ortholog) NW_004955506 4440555 4579642 - 102011463 AGCD01065338;AGCD01065339;AGCD01065340;AGCD01065341;GBBH01102456;GBDJ01083074;XM_005407391 XP_005407448 MODEL 8887140 protein-coding LOC102013418 actin-like NW_004955420 22322153 22323606 - 102013418 AGCD01021196;GBCQ01147818;XM_013513570 XP_013369024 MODEL 9039140 protein-coding Scrn1 secernin 1 INVOLVED IN regulation of synaptic vesicle cycle (ortholog); ASSOCIATED WITH osteoarthritis (ortholog); prostate cancer (ortholog); Stomach Neoplasms (ortholog); FOUND IN nuclear membrane (ortholog); nucleus (ortholog); presynapse (ortholog) NW_004955410 31231418 31299772 - 102016990 AGCD01011318;AGCD01011319;AGCD01011320;AGCD01011321;GBDF01048678;GBDK01305177;XM_013510669 XP_013366123 MODEL 8812046 protein-coding Capn1 calpain 1 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent cysteine-type endopeptidase activity (ortholog); cytoskeletal protein binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); mammary gland involution (ortholog); negative regulation of actin filament polymerization (ortholog); PARTICIPATES IN the proteolytic pathway involving calcium-dependent proteases; ASSOCIATED WITH acute kidney failure (ortholog); Alzheimer's disease (ortholog); aortic atherosclerosis (ortholog); FOUND IN cornified envelope (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955422 20006448 20026984 - 102014143 AGCD01023057;GBDJ01022899;XM_005384508;XM_005384509 XP_005384565;XP_005384566 MODEL 8943650 protein-coding LOC102008019 olfactory receptor 10AG1-like NW_004955511 736042 745089 + 102008019 AGCD01066342;XM_005408210 XP_005408267 MODEL 8933714 protein-coding Slc39a10 solute carrier family 39 member 10 ENCODES a protein that exhibits protein tyrosine phosphatase activator activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN epithelial to mesenchymal transition (ortholog); intracellular zinc ion homeostasis (ortholog); negative regulation of B cell apoptotic process (ortholog); ASSOCIATED WITH Neoplasm Invasiveness (ortholog); FOUND IN apical plasma membrane (ortholog); plasma membrane (ortholog) NW_004955403 4426538 4479693 - 102021070 AGCD01001786;AGCD01001787;GBCB01119952;XM_005373283;XM_005373284 XP_005373340;XP_005373341 MODEL 9025858 protein-coding Lrrc3b leucine rich repeat containing 3B ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); Stomach Neoplasms (ortholog) NW_004955430 18351763 18440120 + 102015654 AGCD01029690;AGCD01029691;AGCD01029692;GBDJ01392673;XM_005387498 XP_005387555 MODEL 9014637 protein-coding Efcc1 EF-hand and coiled-coil domain containing 1 NW_004955450 10494407 10523125 - 102009000 AGCD01042622;AGCD01042623;AGCD01042624;GBBH01206079;GBCE01123547;XM_013518907 XP_013374361 MODEL 10300375 protein-coding LOC106150168 uncharacterized LOC106150168 NW_004955466 1650575 1656741 - 106150168 AGCD01050716;XM_013522010;XM_013522011;XM_013522012;XM_013522013 XP_013377464;XP_013377465;XP_013377466;XP_013377467 MODEL 8729309 protein-coding Gnmt glycine N-methyltransferase ENCODES a protein that exhibits folic acid binding (ortholog); glycine binding (ortholog); glycine N-methyltransferase activity (ortholog); INVOLVED IN glycine catabolic process (ortholog); glycine metabolic process (ortholog); glycogen metabolic process (ortholog); PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; folate mediated one-carbon metabolic pathway; ASSOCIATED WITH Chronic Hepatitis (ortholog); Experimental Diabetes Mellitus (ortholog); glycine N-methyltransferase deficiency (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); methyltransferase complex (ortholog) NW_004955437 8944288 8946642 + 102027229 AGCD01034508;GBDF01234278;XM_005389735 XP_005389792 MODEL 8955093 ncrna LOC102005078 uncharacterized LOC102005078 NW_004955526 2723249 2727334 - 102005078 AGCD01069312;GBCQ01078069;XR_264658 MODEL 8818102 protein-coding LOC102016739 metallothionein-4 NW_004955433 14333415 14335833 + 102016739 AGCD01031711;AGCD01031712;GBDI01354115;XM_005388354 XP_005388411 MODEL 8981962 protein-coding Gatm glycine amidinotransferase ENCODES a protein that exhibits amidinotransferase activity (ortholog); glycine amidinotransferase activity (ortholog); INVOLVED IN creatine biosynthetic process (ortholog); embryonic liver development (ortholog); kidney development (ortholog); PARTICIPATES IN AGAT deficiency pathway; arginine and proline metabolic pathway; creatine metabolic pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); acute kidney failure (ortholog); AGAT deficiency (ortholog); FOUND IN cytosol (ortholog); mitochondrial inner membrane (ortholog); mitochondrial intermembrane space (ortholog) NW_004955409 8068524 8084603 + 102020986 AGCD01009377;GBBH01011356;XM_005376731 XP_005376788 MODEL 8902202 protein-coding LOC102004721 UDP-N-acetylglucosamine transferase subunit ALG13 homolog NW_004955493 8103019 8104261 - 102004721 AGCD01061265;GBDF01238027;XM_005405313 XP_005405370 MODEL 10115516 ncrna LOC106149499 uncharacterized LOC106149499 NW_004955447 17975331 17978802 + 106149499 AGCD01041148;GBDJ01284472;XR_001235724 MODEL 39131885 snrna U1 U1 spliceosomal RNA 8843355 pseudo LOC102020140 60S ribosomal protein L23a-like NW_004955425 16223031 16238637 - 102020140 AGCD01025599 MODEL 9062291 protein-coding Mepe matrix extracellular phosphoglycoprotein INVOLVED IN negative regulation of bone mineralization (ortholog); regulation of bone remodeling (ortholog); ASSOCIATED WITH Bone Fractures (ortholog); osteomalacia (ortholog); FOUND IN extracellular region (ortholog) NW_004955474 2048883 2064515 - 102013502 AGCD01054274;AGCD01054275;GBCE01153076;XM_005401332 XP_005401389 MODEL 10198609 ncrna LOC106149087 uncharacterized LOC106149087 NW_004955437 18139674 18140274 + 106149087 AGCD01034777;GBDF01041549;XR_001235036 MODEL 9059505 protein-coding LOC102022303 spermatogenesis-associated protein 31E1-like NW_004955491 31398 33727 - 102022303 AGCD01060313;XM_005404875 XP_005404932 MODEL 10167172 protein-coding LOC106149626 translation initiation factor IF-2-like NW_004955451 13600266 13603820 - 106149626 AGCD01043490;AGCD01043491;GBDF01057513;XM_013519069 XP_013374523 MODEL 10251137 ncrna LOC106146630 uncharacterized LOC106146630 NW_004955407 33231289 33235900 - 106146630 AGCD01007696;GBDF01078373;XR_001231160 MODEL 10351436 ncrna LOC106149350 uncharacterized LOC106149350 NW_004955402 7053839 7070677 - 106149350 AGCD01000165;GBDF01064798;XR_001235495 MODEL 9044796 protein-coding Tmem179 transmembrane protein 179 NW_004955538 3083815 3093843 - 102023524 AGCD01071145;GBDI01163970;XM_005410828 XP_005410885 MODEL 8923664 protein-coding Ypel3 yippee like 3 INVOLVED IN positive regulation of cellular senescence (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); Neurodevelopmental Disorders (ortholog); spondylocostal dysostosis 5 (ortholog) NW_004955493 6885050 6888729 + 102022934 AGCD01061147;GBDI01021747;XM_005405190;XM_005405191 XP_005405247;XP_005405248 MODEL 10122859 protein-coding LOC106147761 uncharacterized LOC106147761 NW_004955410 36570330 36762717 + 106147761 AGCD01011431;AGCD01011432;AGCD01011433;AGCD01011434;GBDJ01337491;XM_013510500 XP_013365954 MODEL 8935855 protein-coding Tns1 tensin 1 INVOLVED IN cell-matrix adhesion (ortholog); cell-substrate junction assembly (ortholog); fibroblast migration (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); chronic obstructive pulmonary disease (ortholog); lung adenocarcinoma (ortholog); FOUND IN cell surface (ortholog); cell-substrate junction (ortholog); cytoplasm (ortholog) NW_004955453 15289722 15483970 + 102017191 AGCD01044891;GBCE01030185;XM_005395673;XM_005395676;XM_005395677;XM_005395678;XM_005395679;XM_013519826;XM_013519827;XM_013519828;XM_013519829;XM_013519830;XM_013519831;XM_013519832;XM_013519834 XP_005395730;XP_005395733;XP_005395734;XP_005395735;XP_005395736;XP_013375280;XP_013375281;XP_013375282;XP_013375283;XP_013375284;XP_013375285;XP_013375286;XP_013375288 MODEL 8922303 protein-coding LOC102016398 melanoma-associated antigen 11-like NW_004955498 1977844 1978581 - 102016398 AGCD01062758;XM_013505522 XP_013360976 MODEL 8929556 protein-coding LOC102017153 acylcarnitine hydrolase-like NW_004955433 23437473 23489212 + 102017153 AGCD01031962;AGCD01031963;AGCD01031964;AGCD01031965;AGCD01031966;AGCD01031967;AGCD01031968;GBDI01046093;XM_013516113 XP_013371567 MODEL 8909037 protein-coding Scrn2 secernin 2 FOUND IN nucleoplasm (ortholog) NW_004955451 13273421 13276563 + 102013575 AGCD01043464;GBDF01111085;XM_005394263;XM_005394264;XM_013519394;XM_013519395 XP_005394320;XP_005394321;XP_013374848;XP_013374849 MODEL 10383209 ncrna LOC106149354 uncharacterized LOC106149354 NW_004955444 17671547 17673557 - 106149354 AGCD01039222;XR_001235493 MODEL 8941727 protein-coding Slc39a11 solute carrier family 39 member 11 ENCODES a protein that exhibits copper ion transmembrane transporter activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN zinc ion import across plasma membrane (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Ependymomas (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); nucleus (ortholog) NW_004955478 123873 489704 + 102018284 AGCD01055732;AGCD01055733;AGCD01055734;AGCD01055735;AGCD01055736;AGCD01055737;AGCD01055738;GBDF01053360;XM_005402092;XM_005402093;XM_005402094;XM_005402095;XM_013503238;XM_013503239 XP_005402149;XP_005402150;XP_005402151;XP_005402152;XP_013358692;XP_013358693 MODEL 8758810 protein-coding Nell1 neural EGFL like 1 ENCODES a protein that exhibits heparin binding (ortholog); identical protein binding (ortholog); protein kinase C binding (ortholog); INVOLVED IN negative regulation of osteoblast proliferation (ortholog); negative regulation of protein catabolic process (ortholog); positive regulation of apoptotic process (ortholog); ASSOCIATED WITH craniosynostosis (ortholog); esophagus adenocarcinoma (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); non-collagenous component of basement membrane (ortholog) NW_004955476 1445234 2236954 + 102008219 AGCD01055206;AGCD01055207;AGCD01055208;AGCD01055209;AGCD01055210;AGCD01055211;AGCD01055212;AGCD01055213;AGCD01055214;AGCD01055215;AGCD01055216;AGCD01055217;AGCD01055218;AGCD01055219;AGCD01055220;GBBH01168145;XM_005401727;XM_005401728 XP_005401784;XP_005401785 MODEL 8819354 protein-coding Tspo2 translocator protein 2 ENCODES a protein that exhibits 5-aminolevulinic acid transmembrane transporter activity (ortholog); cholesterol binding (ortholog); INVOLVED IN 5-aminolevulinic acid import across plasma membrane (ortholog); enucleate erythrocyte differentiation (ortholog); import across plasma membrane (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); plasma membrane (ortholog) NW_004955437 7714107 7715796 + 102005506 AGCD01034465;GBBH01126606;XM_005389665;XM_005389666 XP_005389722;XP_005389723 MODEL 8939279 protein-coding Gba1 glucosylceramidase beta 1 ENCODES a protein that exhibits beta-glucosidase activity (ortholog); glucosylceramidase activity (ortholog); glucosyltransferase activity (ortholog); INVOLVED IN antigen processing and presentation (ortholog); autophagosome organization (ortholog); autophagy (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH alpha thalassemia-X-linked intellectual disability syndrome (ortholog); Gaucher's disease (ortholog); Gaucher's disease perinatal lethal (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular region (ortholog); Golgi apparatus (ortholog) NW_004955545 1682097 1689373 - 102029796 AGCD01071867;GBDJ01186339;XM_005411586 XP_005411643 MODEL 8841411 protein-coding Deptor DEP domain containing MTOR interacting protein ENCODES a protein that exhibits phosphatidic acid binding (ortholog); protein kinase inhibitor activity (ortholog); protein serine/threonine kinase inhibitor activity (ortholog); INVOLVED IN negative regulation of cell size (ortholog); negative regulation of protein kinase activity (ortholog); negative regulation of TOR signaling (ortholog); PARTICIPATES IN mTOR signaling pathway; FOUND IN lysosomal membrane (ortholog) NW_004955417 25538609 25563374 + 102008413 AGCD01018490;AGCD01018491;GBCB01025767;XM_005381914;XM_005381915;XM_013512835 XP_005381971;XP_005381972;XP_013368289 MODEL 10217993 ncrna LOC106146781 uncharacterized LOC106146781 NW_004955495 2405481 2408836 + 106146781 AGCD01061770;AGCD01061771;GBBH01222002;XR_001231346 MODEL 9047822 ncrna LOC102023021 uncharacterized LOC102023021 NW_004955470 8330094 8336006 - 102023021 AGCD01052826;GBDF01041373;XR_263477 MODEL 39131889 snrna U1 U1 spliceosomal RNA 10176100 ncrna LOC106148286 uncharacterized LOC106148286 NW_004955419 21485925 21487727 - 106148286 AGCD01020279;XR_001233571 MODEL 8723030 ncrna LOC102024714 uncharacterized LOC102024714 NW_004955432 8842134 8844999 - 102024714 AGCD01030888;GBDF01208020;XR_261515 MODEL 10106028 ncrna LOC106148832 uncharacterized LOC106148832 NW_004955429 22544725 22550619 + 106148832 AGCD01029030;GBDF01253986;XR_001234543 MODEL 8995172 protein-coding Tssk3 testis specific serine kinase 3 ENCODES a protein that exhibits magnesium ion binding (ortholog); manganese ion binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN spermatid development (ortholog); spermatogenesis (ortholog); FOUND IN sperm flagellum (ortholog) NW_004955452 10690847 10693660 + 102022250 AGCD01044288;AGCD01044289;GBBH01077856;GBDF01000050;XM_005395066 XP_005395123 MODEL 10393140 ncrna LOC106146795 uncharacterized LOC106146795 NW_004955495 5259545 5266587 + 106146795 AGCD01061989;AGCD01061990;GBDF01179600;XR_001231361;XR_001231362 MODEL 10287350 ncrna LOC106149763 uncharacterized LOC106149763 NW_004955453 11394735 11406840 - 106149763 AGCD01044807;GBDF01095413;XR_001236133 MODEL 8987846 protein-coding LOC102022308 olfactory receptor 18-like NW_004955495 593768 600132 - 102022308 AGCD01061641;AGCD01061642;GBDF01256202;XM_013505086 XP_013360540 MODEL 153211033 mirna MIR668 microRNA 668 8705695 pseudo LOC102004023 guanine deaminase-like NW_004955402 41170178 41171764 - 102004023 AGCD01001012 MODEL 10067533 ncrna LOC106150169 uncharacterized LOC106150169 NW_004955466 1589659 1613359 + 106150169 AGCD01050713;AGCD01050714;XR_001236821 MODEL 10322087 ncrna LOC106149351 uncharacterized LOC106149351 NW_004955444 673104 674866 - 106149351 AGCD01038680;GBBH01125961;XR_001235490 MODEL 9034969 protein-coding Hcfc1 host cell factor C1 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN blastocyst hatching (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); positive regulation of DNA-templated transcription (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autistic disorder (ortholog); Emery-Dreifuss muscular dystrophy (ortholog); genetic disease (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955580 616477 636849 - 102024399 AGCD01075615;AGCD01075616;GBDJ01092545;XM_005414175 XP_005414232 MODEL 8875184 pseudo LOC102029584 transcription elongation factor B polypeptide 2 pseudogene NW_004955452 14232397 14233078 - 102029584 AGCD01044459 MODEL 9051097 protein-coding Gnpat glyceronephosphate O-acyltransferase ENCODES a protein that exhibits catalytic activity (ortholog); glycerone-phosphate O-acyltransferase activity (ortholog); INVOLVED IN cerebellum morphogenesis (ortholog); ether lipid biosynthetic process (ortholog); membrane organization (ortholog); PARTICIPATES IN plasmalogen biosynthetic pathway; plasmalogen metabolic pathway; ASSOCIATED WITH disease of mental health (ortholog); genetic disease (ortholog); prostate cancer (ortholog); FOUND IN peroxisomal membrane (ortholog); peroxisome (ortholog) NW_004955492 7489080 7519590 - 102009288 AGCD01060798;GBCB01025381;XM_005404978 XP_005405035 MODEL 8998336 protein-coding Gpr45 G protein-coupled receptor 45 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); protein carrier activity (ortholog); INVOLVED IN negative regulation of appetite (ortholog); protein localization to non-motile cilium (ortholog); FOUND IN ciliary membrane (ortholog) NW_004955470 10166164 10169031 + 102026099 AGCD01052857;GBCQ01030771;XM_005400779 XP_005400836 MODEL 8774922 protein-coding LOC102004723 maltase-glucoamylase, intestinal NW_004955494 1407172 1645558 - 102004723 AGCD01061397;AGCD01061398;AGCD01061399;AGCD01061400;AGCD01061401;AGCD01061402;AGCD01061403;AGCD01061404;AGCD01061405;AGCD01061406;AGCD01061407;AGCD01061408;AGCD01061409;AGCD01061410;AGCD01061411;AGCD01061412;AGCD01061413;AGCD01061414;AGCD01061415;AGCD01061416;AGCD01061417;AGCD01061418;AGCD01061419;GBCQ01114150;GBDK01228223;XM_013505005 XP_013360459 MODEL 9054459 protein-coding LOC102021963 uncharacterized LOC102021963 NW_004955470 874205 883508 - 102021963 AGCD01052624;XM_005400823 XP_005400880 MODEL 10169580 ncrna LOC106149500 uncharacterized LOC106149500 NW_004955447 17481026 17507464 - 106149500 AGCD01041128;AGCD01041129;XR_001235727 MODEL 39131445 protein-coding NTNG2 netrin G2 9013599 ncrna LOC102020871 uncharacterized LOC102020871 NW_004955451 11803076 11804333 + 102020871 AGCD01043366;GBDF01195668;XR_001235943;XR_001235944 MODEL 8809986 protein-coding Capn10 calpain 10 ENCODES a protein that exhibits calcium-dependent cysteine-type endopeptidase activity (ortholog); cytoskeletal protein binding (ortholog); SNARE binding (ortholog); INVOLVED IN autophagy of mitochondrion (ortholog); cellular response to insulin stimulus (ortholog); mitochondrion organization (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); FOUND IN cytoskeleton (ortholog); cytosol (ortholog); membrane (ortholog) NW_004955542 874083 885085 - 102015768 AGCD01071481;GBDF01159703;XM_005411155;XM_013508102 XP_005411212;XP_013363556 MODEL 8952034 protein-coding Gpr50 G protein-coupled receptor 50 ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN nucleus (ortholog); plasma membrane (ortholog); postsynaptic density (ortholog) NW_004955498 6707630 6711854 + 102005276 AGCD01063132;AGCD01063133;XM_005406431 XP_005406488 MODEL 10322091 ncrna LOC106149627 uncharacterized LOC106149627 NW_004955451 11217020 11219076 + 106149627 AGCD01043342;GBCQ01161012;XR_001235935 MODEL 10246360 protein-coding LOC106146631 EP300-interacting inhibitor of differentiation 2-like NW_004955407 33438908 33460885 + 106146631 AGCD01007700;AGCD01007701;GBBH01124759;XM_013504395;XM_013504396 XP_013359849;XP_013359850 MODEL 8865576 protein-coding Gba2 glucosylceramidase beta 2 ENCODES a protein that exhibits beta-glucosidase activity (ortholog); glucosylceramidase activity (ortholog); glucosyltransferase activity (ortholog); INVOLVED IN bile acid metabolic process (ortholog); central nervous system neuron development (ortholog); cholesterol metabolic process (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); genetic disease (ortholog); hereditary spastic paraplegia (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog) NW_004955472 553556 564411 + 102009042 AGCD01053340;AGCD01053341;GBDI01186476;XM_005401007 XP_005401064 MODEL 10141147 ncrna LOC106150316 uncharacterized LOC106150316 NW_004955471 5077293 5081932 + 106150316 AGCD01053095;XR_001237049 MODEL 8911030 protein-coding Ikzf4 IKAROS family zinc finger 4 ENCODES a protein that exhibits bHLH transcription factor binding (ortholog); identical protein binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); protein homooligomerization (ortholog); ASSOCIATED WITH alopecia areata (ortholog); encephalomyelitis (ortholog); vitiligo (ortholog); FOUND IN nuclear body (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955458 3589865 3627154 + 102028270 AGCD01047325;AGCD01047326;AGCD01047327;AGCD01047328;GBBH01094526;GBDF01304051;XM_013520979;XM_013520980;XM_013520981;XM_013520982;XM_013520983;XM_013520984;XM_013520985 XP_013376433;XP_013376434;XP_013376435;XP_013376436;XP_013376437;XP_013376438;XP_013376439 MODEL 10346766 ncrna LOC106146796 uncharacterized LOC106146796 NW_004955495 5463214 5476654 - 106146796 AGCD01062008;GBCE01016845;XR_001231363 MODEL 10241616 ncrna LOC106147352 uncharacterized LOC106147352 NW_004955546 1523996 1525744 + 106147352 AGCD01072071;GBDF01023843;XR_001232208 MODEL 10252614 ncrna LOC106147762 uncharacterized LOC106147762 NW_004955410 16093344 16103025 + 106147762 AGCD01010947;XR_001232707 MODEL 8963693 protein-coding LOC102022310 uncharacterized LOC102022310 NW_004955426 23903866 23906254 + 102022310 AGCD01026659;GBCE01080087;XM_005386239;XR_001234325 XP_005386296 MODEL 8874823 pseudo LOC102016399 aldose reductase-related protein 2 pseudogene NW_004955424 1563 9210 + 102016399 AGCD01024164;AGCD01024165 MODEL 8711858 pseudo LOC102004024 KATNB1-like protein 1 NW_004955402 52891404 52893054 - 102004024 AGCD01001350 MODEL 8703253 pseudo LOC102020141 general transcription factor IIH subunit 1 pseudogene NW_004955501 6162583 6163797 + 102020141 AGCD01064181 MODEL 8815403 protein-coding Pianp PILR alpha associated neural protein ENCODES a protein that exhibits protein domain specific binding (ortholog); INVOLVED IN cerebellum development (ortholog); dentate gyrus development (ortholog); gamma-aminobutyric acid signaling pathway (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); FOUND IN basolateral plasma membrane (ortholog); presynapse (ortholog) NW_004955413 4309104 4314961 - 102026734 AGCD01013604;GBDF01145709;XM_005378816;XM_005378817;XM_013511343 XP_005378873;XP_005378874;XP_013366797 MODEL 10110082 ncrna LOC106147616 uncharacterized LOC106147616 NW_004955599 47692 51957 + 106147616 AGCD01076614;AGCD01076615;GBCQ01164047;XR_001232550 MODEL 10100061 ncrna LOC106148287 uncharacterized LOC106148287 NW_004955419 26306278 26321214 - 106148287 AGCD01020408;GBDF01265132;XR_001233572 MODEL 8858992 protein-coding Tspoap1 TSPO associated protein 1 ENCODES a protein that exhibits benzodiazepine receptor binding (ortholog); voltage-gated calcium channel activity involved in regulation of presynaptic cytosolic calcium levels (ortholog); INVOLVED IN regulation of neurotransmitter secretion (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); COVID-19 (ortholog); dystonia (ortholog); FOUND IN calyx of Held (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955451 4707440 4733179 + 102027599 AGCD01043140;GBDK01066816;XM_013519267;XM_013519268;XM_013519269;XM_013519270;XM_013519271;XM_013519272 XP_013374721;XP_013374722;XP_013374723;XP_013374724;XP_013374725;XP_013374726 MODEL 39131302 protein-coding TMEM179B transmembrane protein 179B 10284873 ncrna LOC106148422 uncharacterized LOC106148422 NW_004955421 16343755 16344776 + 106148422 AGCD01021998;XR_001233844 MODEL 8819364 protein-coding Lrrc3c leucine rich repeat containing 3C ASSOCIATED WITH allergic asthma (ortholog) NW_004955451 14644464 14647078 + 102005877 AGCD01043564;GBDK01099220;XM_005394332;XM_005394333;XM_005394334;XM_005394335 XP_005394389;XP_005394390;XP_005394391;XP_005394392 MODEL 9030184 pseudo LOC102022663 synaptosomal-associated protein 23 pseudogene NW_004955451 15393866 15394819 - 102022663 AGCD01043606 MODEL 10293599 ncrna LOC106148288 uncharacterized LOC106148288 NW_004955419 21435986 21441566 - 106148288 AGCD01020277;XR_001233573 MODEL 8721815 pseudo LOC102013028 protein-lysine N-methyltransferase N6AMT2 pseudogene NW_004955587 123785 124367 - 102013028 AGCD01076059 MODEL 8810044 protein-coding LOC102017156 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase type 1 NW_004955435 22646282 22653042 + 102017156 AGCD01033516;GBCE01173521;XM_005389085 XP_005389142 MODEL 8717294 ncrna LOC102013421 uncharacterized LOC102013421 NW_004955487 9461547 9465656 - 102013421 AGCD01059459;XR_263994 MODEL 10218022 ncrna LOC106149088 uncharacterized LOC106149088 NW_004955437 18567870 18569580 + 106149088 AGCD01034803;GBDJ01373419;XR_001235037 MODEL 8830301 protein-coding Slc39a12 solute carrier family 39 member 12 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN positive regulation of sprouting angiogenesis (ortholog); regulation of microtubule polymerization (ortholog); regulation of neuron projection development (ortholog); ASSOCIATED WITH melanoma (ortholog); Pulmonary Hypertension, Hypoxia-Induced (ortholog); Right Ventricular Hypertrophy (ortholog); FOUND IN perinuclear region of cytoplasm (ortholog); plasma membrane (ortholog) NW_004955429 10053022 10116713 - 102026241 AGCD01028665;AGCD01028666;XM_005386957;XM_013515346;XM_013515347;XM_013515348;XM_013515349 XP_005387014;XP_013370800;XP_013370801;XP_013370802;XP_013370803 MODEL 10195704 ncrna LOC106148424 uncharacterized LOC106148424 NW_004955421 7611852 7620583 - 106148424 AGCD01021776;XR_001233845 MODEL 8765495 protein-coding Hcfc1r1 host cell factor C1 regulator 1 NW_004955442 14318071 14319549 + 102006717 AGCD01037810;GBBH01207291;XM_005391374 XP_005391431 MODEL 8967891 protein-coding Mertk MER proto-oncogene, tyrosine kinase INVOLVED IN apoptotic cell clearance (ortholog); natural killer cell differentiation (ortholog); negative regulation of cytokine production (ortholog); ASSOCIATED WITH carcinoma (ortholog); cone-rod dystrophy (ortholog); COVID-19 (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); photoreceptor outer segment (ortholog) NW_004955470 2065468 2167909 - 102028952 AGCD01052671;AGCD01052672;GBDK01194810;XM_005400610;XM_013522752 XP_005400667;XP_013378206 MODEL 8912497 ncrna LOC102004725 uncharacterized LOC102004725 NW_004955423 3357252 3371703 + 102004725 AGCD01023511;GBDK01121190;XR_001234108;XR_260946 MODEL 8879987 protein-coding Ikzf5 IKAROS family zinc finger 5 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); protein domain specific binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH Thrombocytopenia 7 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog) NW_004955477 1160183 1177597 - 102024795 AGCD01055503;GBDF01002880;XM_005401953;XM_005401954;XM_005401955;XM_013503085;XM_013503086 XP_005402010;XP_005402011;XP_005402012;XP_013358539;XP_013358540 MODEL 8833305 pseudo LOC102023022 chromodomain Y-like protein NW_004955471 4640224 4642375 - 102023022 AGCD01053084 MODEL 8824521 pseudo LOC102004025 ADP-ribosylation factor-like protein 4A NW_004955402 1033825 1036943 + 102004025 AGCD01000045 MODEL 10392077 ncrna LOC106148833 uncharacterized LOC106148833 NW_004955430 792166 800438 - 106148833 AGCD01029106;GBDJ01327692;XR_001234547 MODEL 8921665 protein-coding Dera deoxyribose-phosphate aldolase ENCODES a protein that exhibits deoxyribose-phosphate aldolase activity (ortholog); INVOLVED IN 2'-deoxyribonucleoside catabolic process (ortholog); PARTICIPATES IN pentose phosphate pathway; ribose 5-phosphate isomerase deficiency pathway; transaldolase deficiency pathway; ASSOCIATED WITH COVID-19 (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955413 12571341 12682985 + 102006998 AGCD01013992;AGCD01013993;AGCD01013994;AGCD01013995;GBDF01053025;XM_005379023;XM_013511619 XP_005379080;XP_013367073 MODEL 8787104 protein-coding Lyg2 lysozyme g2 ENCODES a protein that exhibits lysozyme activity (ortholog); FOUND IN extracellular region (ortholog) NW_004955470 5533188 5540957 - 102011646 AGCD01052752;XM_005400744 XP_005400801 MODEL 39131429 protein-coding TSSK4 testis specific serine kinase 4 9009403 protein-coding Efemp1 EGF-like fibulin extracellular matrix protein 1 ENCODES a protein that exhibits epidermal growth factor receptor activity (ortholog); epidermal growth factor receptor binding (ortholog); INVOLVED IN camera-type eye development (ortholog); embryonic eye morphogenesis (ortholog); epidermal growth factor receptor signaling pathway (ortholog); ASSOCIATED WITH adenocarcinoma (ortholog); adenoma (ortholog); Animal Mammary Neoplasms (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955424 27181717 27240067 + 102006046 AGCD01025105;GBCE01000010;XM_005385769 XP_005385826 MODEL 8988488 protein-coding Ypel4 yippee like 4 INVOLVED IN negative regulation of erythrocyte clearance (ortholog); negative regulation of erythrocyte differentiation (ortholog); protein localization to plasma membrane (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955511 2580518 2588753 - 102019419 AGCD01066418;GBCE01188029;XM_005408001;XM_005408002;XM_013506487;XM_013506488;XM_013506489 XP_005408058;XP_005408059;XP_013361941;XP_013361942;XP_013361943 MODEL 10306030 protein-coding LOC106149764 uncharacterized LOC106149764 NW_004955453 2121293 2131736 + 106149764 AGCD01044623;XM_013519760 XP_013375214 MODEL 8877485 ncrna LOC102023031 uncharacterized LOC102023031 NW_004955417 10305485 10332256 + 102023031 AGCD01018071;GBDF01307283;XR_260471 MODEL 151707884 mirna MIR671 microRNA 671 8805826 protein-coding Gpr52 G protein-coupled receptor 52 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN locomotory behavior (ortholog); response to xenobiotic stimulus (ortholog) NW_004955406 14415252 14420251 + 102014008 AGCD01005964;GBDF01025623;XM_005374893;XM_005374894;XM_005374895;XM_013520909 XP_005374950;XP_005374951;XP_005374952;XP_013376363 MODEL 10218152 pseudo LOC106149355 40S ribosomal protein S2 pseudogene NW_004955444 7499801 7501641 + 106149355 AGCD01038910 MODEL 10280499 ncrna LOC106149352 uncharacterized LOC106149352 NW_004955444 8790396 8869476 - 106149352 AGCD01038945;AGCD01038946;GBDJ01258508;XR_001235491 MODEL 8847831 protein-coding Rpl3 ribosomal protein L3 ENCODES a protein that exhibits 5S rRNA binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN cellular response to interleukin-4 (ortholog); cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog) NW_004955413 25217777 25224052 - 102028075 AGCD01014399;GBCE01000155;XM_005379286 XP_005379343 MODEL 8822511 protein-coding Tns2 tensin 2 ENCODES a protein that exhibits identical protein binding (ortholog); kinase binding (ortholog); protein tyrosine phosphatase activity (ortholog); INVOLVED IN cellular homeostasis (ortholog); collagen metabolic process (ortholog); kidney development (ortholog); ASSOCIATED WITH nephrotic syndrome (ortholog); Pierson syndrome (ortholog); FOUND IN cytoplasm (ortholog); focal adhesion (ortholog); plasma membrane (ortholog) NW_004955458 333104 347399 + 102009466 AGCD01047120;GBCQ01067839;XM_005397134;XM_005397135;XM_005397136;XM_013520873 XP_005397191;XP_005397192;XP_005397193;XP_013376327 MODEL 10324225 ncrna LOC106147353 uncharacterized LOC106147353 NW_004955546 1670315 1674838 + 106147353 AGCD01072075;XR_001232209 MODEL 8738394 protein-coding Tmem18 transmembrane protein 18 INVOLVED IN bone regeneration (ortholog); cell migration (ortholog); eating behavior (ortholog); ASSOCIATED WITH chronic obstructive pulmonary disease (ortholog); obesity (ortholog); pneumonia (ortholog); FOUND IN cytoplasm (ortholog); nuclear membrane (ortholog) NW_004955487 474478 480102 - 102006466 AGCD01059218;GBBH01165952;XM_005404338 XP_005404395 MODEL 9047153 protein-coding LOC102029588 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase-like protein MGAT4E NW_004955406 38833482 38838972 + 102029588 AGCD01006610;GBDF01051127;XM_005375229;XM_005375230;XM_013503321;XM_013503322;XM_013503327 XP_005375286;XP_005375287;XP_013358775;XP_013358776;XP_013358781 MODEL 8865192 ncrna LOC102020144 uncharacterized LOC102020144 NW_004955428 4408830 4453931 - 102020144 AGCD01027690;AGCD01027691;AGCD01027692;AGCD01027693;GBDF01084251;XR_001234436 MODEL 10384257 ncrna LOC106149501 uncharacterized LOC106149501 NW_004955405 32519394 32525423 + 106149501 AGCD01005334;GBBH01094034;XR_001235729 MODEL 8826666 ncrna LOC102016740 uncharacterized LOC102016740 NW_004955521 3837816 3867568 - 102016740 AGCD01068246;AGCD01068247;GBDF01115442;XR_264608 MODEL 8700307 ncrna LOC102005079 uncharacterized LOC102005079 NW_004955437 3889822 3896136 - 102005079 AGCD01034353;AGCD01034354;GBDF01014278;XR_001235105;XR_001235106;XR_261849;XR_261850 MODEL 8930698 ncrna LOC102020872 uncharacterized LOC102020872 NW_004955873 4268 9703 + 102020872 AGCD01078535;XR_265192 MODEL 10125742 ncrna LOC106149628 uncharacterized LOC106149628 NW_004955451 11361389 11366181 + 106149628 AGCD01043350;GBDK01267348;XR_001235937 MODEL 8705394 protein-coding Il10 interleukin 10 ENCODES a protein that exhibits cytokine activity (ortholog); interleukin-10 receptor binding (ortholog); protein dimerization activity (ortholog); INVOLVED IN branching involved in labyrinthine layer morphogenesis (ortholog); cellular response to antibiotic (ortholog); cellular response to estradiol stimulus (ortholog); PARTICIPATES IN Interleukin-10 signaling pathway; interleukin-4 signaling pathway; ASSOCIATED WITH abdominal aortic aneurysm (ortholog); Actinic Cheilitis (ortholog); Acute Experimental Pancreatitis (ortholog); FOUND IN extracellular region (ortholog); interleukin-10 receptor complex (ortholog) NW_004955406 42307789 42312255 - 102022355 AGCD01006700;GBDJ01151912;XM_005375404 XP_005375461 MODEL 10282768 ncrna LOC106146797 uncharacterized LOC106146797 NW_004955495 5385401 5403848 + 106146797 AGCD01062002;GBDJ01107706;XR_001231366 MODEL 8743704 protein-coding Capn11 calpain 11 FOUND IN acrosomal vesicle (ortholog) NW_004955437 9791021 9804769 + 102016847 AGCD01034543;GBDF01000703;XM_005389797;XM_005389798;XM_005389799;XM_005389800;XM_005389801;XM_005389802 XP_005389854;XP_005389855;XP_005389856;XP_005389857;XP_005389858;XP_005389859 MODEL 8821515 protein-coding Ypel5 yippee like 5 FOUND IN ubiquitin ligase complex (ortholog) NW_004955469 11955257 11967360 + 102019684 AGCD01052573;AGCD01052574;GBDF01043947;XM_005400547;XM_005400548;XM_005400549;XM_005400550 XP_005400604;XP_005400605;XP_005400606;XP_005400607 MODEL 9041243 ncrna LOC102016402 uncharacterized LOC102016402 NW_004955506 5201291 5204170 - 102016402 AGCD01065356;GBDI01314103;XR_264356 MODEL 8905147 ncrna LOC102017160 uncharacterized LOC102017160 NW_004955536 2781372 2785091 + 102017160 AGCD01070802;GBCB01039543;XR_264763 MODEL 9003581 protein-coding Gnpda1 glucosamine-6-phosphate deaminase 1 ENCODES a protein that exhibits glucosamine-6-phosphate deaminase activity (ortholog); INVOLVED IN D-glucosamine catabolic process (ortholog); generation of precursor metabolites and energy (ortholog); UDP-N-acetylglucosamine biosynthetic process (ortholog); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; sialic acid storage disease pathway; ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog) NW_004955415 11770111 11783430 + 102028185 AGCD01016176;GBDK01082590;XM_005380710;XM_005380711 XP_005380767;XP_005380768 MODEL 8828161 pseudo LOC102013029 cyclic AMP-dependent transcription factor ATF-4 pseudogene NW_004955402 34589714 34591735 + 102013029 AGCD01000866 MODEL 10140572 protein-coding LOC106149089 cuticle collagen 13-like NW_004955437 5146094 5147528 + 106149089 AGCD01034379;GBCQ01087057;GBDJ01406192;XM_013516771 XP_013372225 MODEL 10235799 protein-coding Ntng2 netrin G2 INVOLVED IN axonogenesis (ortholog); modulation of chemical synaptic transmission (ortholog); postsynaptic specialization assembly (ortholog); ASSOCIATED WITH bipolar disorder (ortholog); Developmental Disabilities (ortholog); Ehlers-Danlos syndrome classic type 1 (ortholog); FOUND IN axon (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955513 1654398 1701062 + 106147051 AGCD01066858;AGCD01066859;AGCD01066860;GBBH01055029;XM_013506741 XP_013362195 MODEL 8703676 protein-coding Hcfc2 host cell factor C2 ENCODES a protein that exhibits transcription coregulator activity (ortholog); INVOLVED IN antiviral innate immune response (ortholog); immune response involved in response to exogenous dsRNA (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); MLL1 complex (ortholog) NW_004955405 38729700 38758398 + 102009455 AGCD01005484;AGCD01005485;GBDF01082212;XM_005374584;XM_005374585;XM_005374586;XM_013518889 XP_005374641;XP_005374642;XP_005374643;XP_013374343 MODEL 10276249 ncrna LOC106146632 uncharacterized LOC106146632 NW_004955487 6030784 6032717 - 106146632 AGCD01059352;AGCD01059353;GBDF01014683;XR_001231162 MODEL 10145276 ncrna LOC106150170 uncharacterized LOC106150170 NW_004955466 1588063 1589940 - 106150170 AGCD01050713;XR_001236822 MODEL 10123581 protein-coding LOC106148834 uncharacterized LOC106148834 NW_004955430 1861348 1862371 - 106148834 AGCD01029138;GBBH01149992;GBDI01258217;XM_013515565 XP_013371019 MODEL 8906414 protein-coding Tspyl1 TSPY like 1 ENCODES a protein that exhibits enzyme binding (ortholog); identical protein binding (ortholog); ASSOCIATED WITH COVID-19 (ortholog); gonadal dysgenesis (ortholog); sudden infant death syndrome (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog) NW_004955526 539178 552120 + 102011239 AGCD01069240;GBDI01081447;XM_013507351 XP_013362805 MODEL 10064450 protein-coding LOC106147617 spidroin-1-like NW_004955599 488312 489155 + 106147617 AGCD01076652;GBDJ01337321;XM_013510038 XP_013365492 MODEL 10235220 protein-coding LOC106149502 UDP-glucuronosyltransferase 2B17-like NW_004955447 3733231 3744650 + 106149502 AGCD01040648;AGCD01040649;AGCD01040650;AGCD01040651;GBCE01062746;XM_013518533 XP_013373987 MODEL 8987364 protein-coding Gbe1 1,4-alpha-glucan branching enzyme 1 ENCODES a protein that exhibits 1,4-alpha-glucan branching enzyme activity (ortholog); carbohydrate binding (ortholog); INVOLVED IN glycogen biosynthetic process (ortholog); negative regulation of neuron apoptotic process (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; glycogen biosynthetic pathway; glycogen storage disease type III pathway; ASSOCIATED WITH autosomal recessive cutis laxa type IB (ortholog); Familial Cirrhosis with Deposition of Abnormal Glycogen (ortholog); fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN cytosol (ortholog) NW_004955407 10692082 10959236 + 102028159 AGCD01007085;AGCD01007086;AGCD01007087;AGCD01007088;AGCD01007089;AGCD01007090;AGCD01007091;AGCD01007092;GBDI01173668;XM_005375541 XP_005375598 MODEL 10338042 ncrna LOC106149765 uncharacterized LOC106149765 NW_004955405 16355971 16361231 + 106149765 AGCD01004969;GBDF01210468;XR_001236139 MODEL 10382215 ncrna LOC106147763 uncharacterized LOC106147763 NW_004955410 25746557 25757863 + 106147763 AGCD01011172;AGCD01011173;GBDF01252820;XR_001232708 MODEL 9017796 protein-coding LOC102021966 uncharacterized LOC102021966 NW_004955476 11530073 11534189 + 102021966 AGCD01055464;AGCD01055465;GBCB01109792;XM_005401860;XR_263647 XP_005401917 MODEL 39133695 mirna MIR675 microRNA 675 8755021 pseudo LOC102022311 uncharacterized LOC102022311 NW_004955427 19170551 19172121 + 102022311 AGCD01027359 MODEL 9008229 protein-coding Lrrc4 leucine rich repeat containing 4 INVOLVED IN excitatory synapse assembly (ortholog); modulation of chemical synaptic transmission (ortholog); postsynaptic density protein 95 clustering (ortholog); FOUND IN dendritic spine (ortholog); excitatory synapse (ortholog); glutamatergic synapse (ortholog) NW_004955479 9012253 9066940 - 102023804 AGCD01056456;GBDF01210045;XM_005402363;XM_005402364;XM_005402365;XM_013503285;XR_001230881;XR_263738 XP_005402420;XP_005402421;XP_005402422;XP_013358739 MODEL 10389250 pseudo LOC106149356 ferritin light chain pseudogene NW_004955444 9512225 9514935 - 106149356 AGCD01038970 MODEL 8787852 ncrna LOC102013431 uncharacterized LOC102013431 NW_004955504 2733042 2738476 - 102013431 AGCD01064859;AGCD01064860;GBDF01281745;XR_264289 MODEL 8866049 protein-coding Gpr55 G protein-coupled receptor 55 ENCODES a protein that exhibits cannabinoid receptor activity (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN bone resorption (ortholog); G protein-coupled receptor signaling pathway (ortholog); negative regulation of osteoclast differentiation (ortholog); ASSOCIATED WITH disease of cellular proliferation (ortholog); hyperglycemia (ortholog); Hypertriglyceridemia (ortholog); FOUND IN plasma membrane (ortholog) NW_004955453 4470602 4520036 + 102024754 AGCD01044691;AGCD01044692;GBDF01222892;XM_005395405;XM_005395406;XM_005395407;XM_013519755;XR_001236125 XP_005395462;XP_005395463;XP_005395464;XP_013375209 MODEL 10185880 ncrna LOC106148425 uncharacterized LOC106148425 NW_004955421 26751034 26761273 - 106148425 AGCD01022270;AGCD01022271;AGCD01022272;GBDF01075843;XR_001233850 MODEL 10277295 ncrna LOC106147354 uncharacterized LOC106147354 NW_004955546 3055510 3068741 + 106147354 AGCD01072111;AGCD01072112;AGCD01072113;AGCD01072114;AGCD01072115;AGCD01072116;AGCD01072117;GBDF01153546;XR_001232210 MODEL 9009983 protein-coding Pias1 protein inhibitor of activated STAT 1 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); enzyme binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN DNA damage response (ortholog); fat cell differentiation (ortholog); G1/S transition of mitotic cell cycle (ortholog); PARTICIPATES IN aldosterone signaling pathway; ataxia telangiectasia-mutated (ATM) signaling pathway; Hedgehog signaling pathway; ASSOCIATED WITH Arsenic Poisoning (ortholog); Brain Injuries (ortholog); focal segmental glomerulosclerosis (ortholog); FOUND IN glutamatergic synapse (ortholog); nuclear periphery (ortholog); nucleoplasm (ortholog) NW_004955450 7896741 7991045 - 102022988 AGCD01042552;AGCD01042553;AGCD01042554;GBDJ01224794;XM_005393682;XR_001235865 XP_005393739 MODEL 8968861 protein-coding Tmem181 transmembrane protein 181 ENCODES a protein that exhibits toxic substance binding (ortholog) NW_004955439 3843823 3914702 - 102012247 AGCD01035690;AGCD01035691;AGCD01035692;AGCD01035693;AGCD01035694;GBDF01039663;XM_005390520;XM_005390521;XM_013517386 XP_005390577;XP_005390578;XP_013372840 MODEL 8938752 protein-coding Tssk4 testis specific serine kinase 4 ENCODES a protein that exhibits ATP binding (ortholog); identical protein binding (ortholog); magnesium ion binding (ortholog); INVOLVED IN fertilization (ortholog); flagellated sperm motility (ortholog); spermatid development (ortholog); FOUND IN motile cilium (ortholog); sperm flagellum (ortholog) NW_004955409 36190182 36191801 - 102008068 AGCD01010450;GBDF01003132;GBDJ01396043;XM_013510407 XP_013365861 MODEL 8970426 protein-coding Mesd mesoderm development LRP chaperone ENCODES a protein that exhibits identical protein binding (ortholog); low-density lipoprotein particle receptor binding (ortholog); protein folding chaperone (ortholog); INVOLVED IN negative regulation of glycoprotein biosynthetic process (ortholog); ossification (ortholog); phagocytosis (ortholog); ASSOCIATED WITH osteogenesis imperfecta type 20 (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); nuclear body (ortholog) NW_004955416 11722388 11731758 - 102021552 AGCD01017190;GBCC01029483;XM_005381438 XP_005381495 MODEL 8855856 protein-coding Gnpda2 glucosamine-6-phosphate deaminase 2 ENCODES a protein that exhibits glucosamine-6-phosphate deaminase activity (ortholog); INVOLVED IN UDP-N-acetylglucosamine biosynthetic process (ortholog); ASSOCIATED WITH Body Weight (ortholog); obesity (ortholog) NW_004955443 3338300 3360561 + 102004526 AGCD01038191;GBDF01162239;XM_013518064;XM_013518065 XP_013373518;XP_013373519 MODEL 8978227 protein-coding LOC102004028 uncharacterized PE-PGRS family protein PE_PGRS3-like NW_004955451 11193050 11196987 + 102004028 AGCD01043342;GBCE01114159;XM_005394131;XM_013519091;XM_013519092 XP_005394188;XP_013374545;XP_013374546 MODEL 8813001 protein-coding LOC102020146 ligand-dependent corepressor NW_004955507 3039562 3195267 + 102020146 AGCD01065610;AGCD01065611;AGCD01065612;AGCD01065613;GBDF01088445;XM_005407585;XM_005407589;XM_005407590;XM_005407591;XM_005407592;XM_005407593;XM_013506199;XM_013506200;XM_013506201 XP_005407642;XP_005407646;XP_005407647;XP_005407648;XP_005407649;XP_005407650;XP_013361653;XP_013361654;XP_013361655 MODEL 8725888 protein-coding Lyl1 LYL1 basic helix-loop-helix family member ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN B cell differentiation (ortholog); blood vessel maturation (ortholog); definitive hemopoiesis (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); lymphoid leukemia (ortholog); myelodysplastic syndrome (ortholog) NW_004955415 32121808 32124730 - 102028743 AGCD01016710;GBCQ01177052;XM_005381052 XP_005381109 MODEL 8799023 ncrna LOC102008020 uncharacterized LOC102008020 NW_004955512 5854546 5876484 - 102008020 AGCD01066779;AGCD01066780;GBCQ01118865;XR_264451 MODEL 8862144 protein-coding Nell2 neural EGFL like 2 ENCODES a protein that exhibits calcium ion binding (ortholog); heparin binding (ortholog); identical protein binding (ortholog); INVOLVED IN commissural neuron axon guidance (ortholog); development of secondary female sexual characteristics (ortholog); fertilization (ortholog); ASSOCIATED WITH lung adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); extracellular region (ortholog) NW_004955500 3669893 4049765 - 102007788 AGCD01063749;AGCD01063750;AGCD01063751;AGCD01063752;AGCD01063753;AGCD01063754;AGCD01063755;AGCD01063756;AGCD01063757;AGCD01063758;AGCD01063759;AGCD01063760;AGCD01063761;AGCD01063762;AGCD01063763;AGCD01063764;AGCD01063765;GBCE01024937;XM_005406591 XP_005406648 MODEL 9013676 protein-coding Efemp2 EGF-like fibulin extracellular matrix protein 2 ENCODES a protein that exhibits heparin binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN aorta development (ortholog); aorta smooth muscle tissue morphogenesis (ortholog); artery development (ortholog); ASSOCIATED WITH aortic aneurysm (ortholog); aortic disease (ortholog); aortic dissection (ortholog); FOUND IN basement membrane (ortholog); elastic fiber (ortholog) NW_004955422 19463090 19470605 + 102026333 AGCD01023010;AGCD01023011;GBBH01165207;XM_005384452;XM_005384453;XM_005384454;XM_013513845 XP_005384509;XP_005384510;XP_005384511;XP_013369299 MODEL 10084605 ncrna LOC106149629 uncharacterized LOC106149629 NW_004955405 40649638 40658486 - 106149629 AGCD01005522;GBDF01129109;XR_001235938 MODEL 8770686 ncrna LOC102022665 uncharacterized LOC102022665 NW_004955406 12087669 12097907 - 102022665 AGCD01005907;GBDF01251069;XR_001236360;XR_001236361;XR_001236362 MODEL 8979519 ncrna LOC102023036 uncharacterized LOC102023036 NW_004955483 8469720 8483504 + 102023036 AGCD01057837;GBDF01162509;XR_001231031;XR_263870 MODEL 10065033 ncrna LOC106148289 uncharacterized LOC106148289 NW_004955419 5944236 5946726 + 106148289 AGCD01019843;GBDF01014350;XR_001233574 MODEL 8762424 protein-coding LOC102024715 asparagine synthetase [glutamine-hydrolyzing] NW_004955432 14130126 14141315 + 102024715 AGCD01031038;GBDF01001575;GBDF01001576;XM_013516080 XP_013371534 MODEL 9043657 protein-coding LOC102004729 histone-lysine N-methyltransferase PRDM9 NW_004955499 553632 566756 + 102004729 AGCD01063239;AGCD01063240;GBCQ01046889;GBDF01224963;XM_013505574 XP_013361028 MODEL 8901398 protein-coding Rpl30 ribosomal protein L30 ENCODES a protein that exhibits selenocysteine insertion sequence binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); cytoplasmic translation (ortholog); liver regeneration (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH herpes simplex (ortholog); FOUND IN cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog) NW_004955417 13764814 13767698 - 102009281 AGCD01018191;GBDF01007139;XM_005381844 XP_005381901 MODEL 9048998 pseudo LOC102029589 40S ribosomal protein S16 pseudogene NW_004955456 11186389 11188287 - 102029589 AGCD01046543;XM_005396872 MODEL 8928191 pseudo LOC102024719 periphilin-1 pseudogene NW_004955529 38139 39596 + 102024719 AGCD01069622;XM_005410091 MODEL 10252636 ncrna LOC106150317 uncharacterized LOC106150317 NW_004955471 5899639 5915207 - 106150317 AGCD01053115;GBDI01307991;XR_001237051;XR_001237052 MODEL 8744085 protein-coding Lrrc40 leucine rich repeat containing 40 NW_004955423 21706336 21749720 + 102009398 AGCD01023947;AGCD01023948;GBDF01123516;XM_005385259;XM_005385260;XM_013514398;XM_013514399 XP_005385316;XP_005385317;XP_013369852;XP_013369853 MODEL 8800159 protein-coding Derl1 derlin 1 ENCODES a protein that exhibits ATPase binding (ortholog); identical protein binding (ortholog); MHC class I protein binding (ortholog); INVOLVED IN cellular response to misfolded protein (ortholog); cellular response to unfolded protein (ortholog); endoplasmic reticulum unfolded protein response (ortholog); ASSOCIATED WITH Stevens-Johnson syndrome (ortholog); FOUND IN ATPase complex (ortholog); Derlin-1 retrotranslocation complex (ortholog); Derlin-1-VIMP complex (ortholog) NW_004955540 1918230 1944186 - 102025511 AGCD01071308;GBCE01054838;XM_005410910 XP_005410967 MODEL 8747187 pseudo LOC102020874 S-adenosylmethionine decarboxylase proenzyme pseudogene NW_004955403 46310228 46311002 + 102020874 AGCD01002854 MODEL 39131893 snrna U1 U1 spliceosomal RNA 10071994 ncrna LOC106150171 uncharacterized LOC106150171 NW_004955466 1624131 1627202 + 106150171 AGCD01050714;GBDI01342165;XR_001236823 MODEL 9068092 protein-coding Hck HCK proto-oncogene, Src family tyrosine kinase ENCODES a protein that exhibits lipid binding (ortholog); phosphotyrosine residue binding (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN defense response to Gram-positive bacterium (ortholog); intracellular signal transduction (ortholog); negative regulation of apoptotic process (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; glypican signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); autoimmune disease (ortholog); Autoinflammation with Pulmonary and Cutaneous Vasculitis (ortholog); FOUND IN actin filament (ortholog); caveola (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955422 28934512 28986998 - 102011881 AGCD01023375;AGCD01023376;GBDK01277740;XM_005384880;XM_013514242 XP_005384937;XP_013369696 MODEL 10189790 protein-coding LOC106147618 uncharacterized LOC106147618 NW_004955599 273942 278891 - 106147618 AGCD01076637;GBCQ01061836;XM_013510039 XP_013365493 MODEL 10358975 ncrna LOC106146798 uncharacterized LOC106146798 NW_004955495 5644903 5645615 - 106146798 AGCD01062016;AGCD01062017;XR_001231367 MODEL 8785268 protein-coding Slc39a13 solute carrier family 39 member 13 ENCODES a protein that exhibits protein homodimerization activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); connective tissue development (ortholog); intracellular zinc ion homeostasis (ortholog); PARTICIPATES IN Bone morphogenetic proteins signaling pathway; ASSOCIATED WITH alcohol-associated liver disease (ortholog); bone disease (ortholog); connective tissue disease (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955422 845076 852772 - 102022302 AGCD01022437;AGCD01022438;AGCD01022439;GBBH01093129;GBDF01081895;XM_005383973 XP_005384030 MODEL 8856133 protein-coding Capn12 calpain 12 NW_004955468 761015 771387 + 102011970 AGCD01051738;AGCD01051739;GBCE01016701;XM_005399839;XM_005399840 XP_005399896;XP_005399897 MODEL 10370163 protein-coding LOC106149766 endothelin-converting enzyme-like 1 NW_004955453 3534796 3535683 - 106149766 AGCD01044663;GBDF01108523;GBDI01295337;XM_013519761 XP_013375215 MODEL 8953739 ncrna LOC102016403 uncharacterized LOC102016403 NW_004955429 6520317 6531549 - 102016403 AGCD01028550;GBDF01278048;XR_001234524 MODEL 8999798 protein-coding LOC102022318 olfactory receptor 4A16-like NW_004955511 116700 117623 - 102022318 AGCD01066320;XM_005408177 XP_005408234 MODEL 8795674 protein-coding Yrdc yrdC N6-threonylcarbamoyltransferase domain containing ENCODES a protein that exhibits L-threonylcarbamoyladenylate synthase activity (ortholog); INVOLVED IN negative regulation of transport (ortholog); tRNA threonylcarbamoyladenosine modification (ortholog); ASSOCIATED WITH Galloway-Mowat syndrome 10 (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); mitochondrion (ortholog) NW_004955452 15575421 15579186 - 102014973 AGCD01044488;GBCQ01072791;XM_005395220 XP_005395277 MODEL 8770373 protein-coding LOC102013433 ras-related protein Rab-7a-like NW_004955429 13690345 13691311 - 102013433 AGCD01028762;GBDI01000890;XM_013515500 XP_013370954 MODEL 8902898 pseudo LOC102013034 mitochondrial inner membrane protease ATP23 homolog NW_004955402 57646854 57653921 + 102013034 AGCD01001505 MODEL 8763434 protein-coding LOC102005080 transcription termination factor 3, mitochondrial-like NW_004955536 102197 103480 + 102005080 AGCD01070713;XM_013507725 XP_013363179 MODEL 10308254 ncrna LOC106149090 uncharacterized LOC106149090 NW_004955437 10994061 10996697 - 106149090 AGCD01034568;XR_001235040;XR_001235041 MODEL 10114070 ncrna LOC106146633 uncharacterized LOC106146633 NW_004955488 9186952 9199420 - 106146633 AGCD01059750;GBCE01071946;XR_001231163 MODEL 8900609 protein-coding Ntpcr nucleoside-triphosphatase, cancer-related ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); CTPase activity (ortholog); GTPase activity (ortholog); PARTICIPATES IN thiamine metabolic pathway; FOUND IN mitochondrion (ortholog) NW_004955492 6253087 6279016 - 102003146 AGCD01060763;AGCD01060764;GBBH01142902;XM_005404963 XP_005405020 MODEL 10242449 pseudo LOC106148835 sperm motility kinase 1-like NW_004955430 2121099 2122060 + 106148835 AGCD01029152 MODEL 8841564 protein-coding Mesp2 mesoderm posterior bHLH transcription factor 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN mesodermal cell migration (ortholog); Notch signaling pathway (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); spondylocostal dysostosis (ortholog); spondylocostal dysostosis 1 (ortholog); FOUND IN nucleus (ortholog) NW_004955416 15447959 15450209 - 102015198 AGCD01017330;GBDF01046554;XM_013512432 XP_013367886 MODEL 8727485 protein-coding Tspyl2 TSPY like 2 INVOLVED IN negative regulation of cell growth (ortholog); negative regulation of DNA replication (ortholog); regulation of protein kinase activity (ortholog); ASSOCIATED WITH Endometrial Neoplasms (ortholog); FOUND IN nucleolus (ortholog); nucleus (ortholog) NW_004955475 160768 167359 + 102010477 AGCD01054680;GBBH01208279;XM_005401476 XP_005401533 MODEL 8870193 protein-coding Il10ra interleukin 10 receptor subunit alpha ENCODES a protein that exhibits interleukin-10 binding (ortholog); interleukin-10 receptor activity (ortholog); INVOLVED IN interleukin-10-mediated signaling pathway (ortholog); intestinal epithelial structure maintenance (ortholog); negative regulation of autophagy (ortholog); PARTICIPATES IN Interleukin-10 signaling pathway; ASSOCIATED WITH COVID-19 (ortholog); Crohn's disease (ortholog); Experimental Autoimmune Encephalomyelitis (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955412 19182536 19197083 + 102004584 AGCD01012950;GBDK01061604;XM_005378226 XP_005378283 MODEL 8940998 protein-coding Gbf1 golgi brefeldin A resistant guanine nucleotide exchange factor 1 ENCODES a protein that exhibits phosphatidylinositol-3,4,5-trisphosphate binding (ortholog); phosphatidylinositol-3,5-bisphosphate binding (ortholog); INVOLVED IN cell activation involved in immune response (ortholog); COPI coating of Golgi vesicle (ortholog); endoplasmic reticulum-Golgi intermediate compartment organization (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; ASSOCIATED WITH axonal neuropathy (ortholog); cataract 11 multiple types (ortholog); Charcot-Marie-Tooth disease dominant intermediate A (ortholog); FOUND IN cell leading edge (ortholog); cis-Golgi network (ortholog); cytoplasm (ortholog) NW_004955485 8006161 8126074 - 102018732 AGCD01058688;AGCD01058689;AGCD01058690;GBCB01020289;XM_005403846;XM_005403847;XM_005403848;XM_005403849;XM_005403850;XM_005403851 XP_005403903;XP_005403904;XP_005403905;XP_005403906;XP_005403907;XP_005403908 MODEL 9039520 protein-coding Tns3 tensin 3 ENCODES a protein that exhibits guanyl-nucleotide exchange factor adaptor activity (ortholog); INVOLVED IN bone resorption (ortholog); cell migration (ortholog); lung alveolus development (ortholog); FOUND IN focal adhesion (ortholog); podosome (ortholog) NW_004955456 5671688 5812039 + 102009349 AGCD01046345;AGCD01046346;AGCD01046347;AGCD01046348;AGCD01046349;AGCD01046350;GBDF01126761;GBDF01126763;XM_013520558 XP_013376012 MODEL 10290346 ncrna LOC106147764 uncharacterized LOC106147764 NW_004955410 19909562 19930986 + 106147764 AGCD01011035;AGCD01011036;GBDK01064981;XR_001232710 MODEL 39133646 mirna MIR676 microRNA 676 10359253 ncrna LOC106148290 uncharacterized LOC106148290 NW_004955419 28366961 28369673 - 106148290 AGCD01020461;XR_001233575 MODEL 9010589 protein-coding LOC102021968 serine/threonine-protein kinase B-raf-like NW_004955416 31492945 31499854 + 102021968 AGCD01017758;XM_013512431 XP_013367885 MODEL 8902009 protein-coding LOC102022667 complement factor H NW_004955406 33501759 33581744 + 102022667 AGCD01006478;AGCD01006479;AGCD01006480;AGCD01006481;AGCD01006482;AGCD01006483;GBCQ01035933;XM_005375112;XM_005375113 XP_005375169;XP_005375170 MODEL 8946244 protein-coding Efhb EF-hand domain family member B ENCODES a protein that exhibits calcium ion sensor activity (ortholog); INVOLVED IN flagellated sperm motility (ortholog); regulation of calcineurin-NFAT signaling cascade (ortholog); regulation of store-operated calcium entry (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); sperm flagellum (ortholog) NW_004955430 11932753 11986985 - 102004190 AGCD01029468;AGCD01029469;AGCD01029470;AGCD01029471;AGCD01029472;GBDJ01405223;XM_005387460;XM_013515691 XP_005387517;XP_013371145 MODEL 8771461 pseudo LOC102016742 heat shock protein HSP 90-alpha pseudogene NW_004955523 2005850 2008048 + 102016742 AGCD01068554 MODEL 10379261 ncrna LOC106148426 uncharacterized LOC106148426 NW_004955421 24244142 24246413 - 106148426 AGCD01022209;XR_001233852 MODEL 39132427 snrna U6 U6 spliceosomal RNA 8873551 protein-coding Slc39a14 solute carrier family 39 member 14 ENCODES a protein that exhibits cadmium ion transmembrane transporter activity (ortholog); ferrous iron transmembrane transporter activity (ortholog); iron ion transmembrane transporter activity (ortholog); INVOLVED IN cellular response to glucose stimulus (ortholog); cellular response to insulin stimulus (ortholog); chondrocyte differentiation (ortholog); PARTICIPATES IN iron uptake pathway; ASSOCIATED WITH genetic disease (ortholog); hypermanganesemia with dystonia 2 (ortholog); Hyperostosis Cranialis Interna (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); early endosome membrane (ortholog) NW_004955403 45828247 45867309 + 102006304 AGCD01002837;AGCD01002838;GBCB01120359;XM_005373657;XM_013513817;XM_013513820;XM_013513823;XM_013513825;XM_013513828 XP_005373714;XP_013369271;XP_013369274;XP_013369277;XP_013369279;XP_013369282 MODEL 9061962 ncrna LOC102029592 uncharacterized LOC102029592 NW_004955408 36972319 36999431 + 102029592 AGCD01008993;AGCD01008994;GBDF01052024;XR_001232070;XR_001232071;XR_259735 MODEL 8723178 ncrna LOC102004029 uncharacterized LOC102004029 NW_004955451 12567051 12574581 - 102004029 AGCD01043406;AGCD01043407;AGCD01043408;GBDF01043422;XR_001235955 MODEL 8954008 pseudo LOC102024720 60S ribosomal protein L23 pseudogene NW_004955436 2055161 2055602 - 102024720 AGCD01033601 MODEL 9065147 protein-coding Tssk6 testis specific serine kinase 6 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN flagellated sperm motility (ortholog); protein phosphorylation (ortholog); sperm DNA condensation (ortholog); FOUND IN axonemal microtubule doublet inner sheath (ortholog); sperm flagellum (ortholog) NW_004955524 2433855 2434864 + 102014164 AGCD01068818;GBDF01008291;XM_005409638 XP_005409695 MODEL 8987817 protein-coding Lrrc41 leucine rich repeat containing 41 ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955464 11976259 11996588 + 102021536 AGCD01050169;AGCD01050170;GBDF01002957;XM_005398681;XM_013521589 XP_005398738;XP_013377043 MODEL 9015649 ncrna LOC102008027 uncharacterized LOC102008027 NW_004955530 1812786 1910843 - 102008027 AGCD01069900;AGCD01069901;AGCD01069902;GBDF01148074;XR_001232002 MODEL 8783574 protein-coding Derl2 derlin 2 ENCODES a protein that exhibits protein-containing complex binding (ortholog); signal recognition particle binding (ortholog); INVOLVED IN endoplasmic reticulum unfolded protein response (ortholog); ERAD pathway (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); FOUND IN early endosome (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955467 10824922 10837408 - 102012520 AGCD01051585;AGCD01051586;GBCC01027755;GBDI01134494;XM_013522214 XP_013377668 MODEL 8795893 pseudo LOC102023040 actin-related protein 2/3 complex subunit 1A-like NW_004955420 13377017 13378758 + 102023040 AGCD01020920 MODEL 8740091 pseudo LOC102017162 NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 pseudogene NW_004955437 21150063 21151074 - 102017162 AGCD01034900 MODEL 8991351 protein-coding Nemf nuclear export mediator factor ENCODES a protein that exhibits alpha-aminoacyl-tRNA binding (ortholog); ribosomal large subunit binding (ortholog); INVOLVED IN CAT tailing (ortholog); nuclear export (ortholog); protein-containing complex assembly (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); genetic disease (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytosol (ortholog); cytosolic ribosome (ortholog); RQC complex (ortholog) NW_004955409 12855655 12901673 + 102029375 AGCD01009572;AGCD01009573;AGCD01009574;AGCD01009575;AGCD01009576;GBBH01057421;GBDF01162790;XM_013510340 XP_013365794 MODEL 10305049 protein-coding LOC106149357 translation initiation factor IF-2-like NW_004955444 3759322 3812363 + 106149357 AGCD01038796;AGCD01038797;XM_013518137 XP_013373591 MODEL 39131518 protein-coding GPR55 G protein-coupled receptor 55 8728731 pseudo LOC102004739 olfactory receptor 8J1-like NW_004955511 1437243 1438189 + 102004739 AGCD01066367 MODEL 10381693 protein-coding LOC106147355 zinc finger protein 709-like NW_004955546 540952 542104 - 106147355 AGCD01071997;XM_013508425 XP_013363879 MODEL 9006970 protein-coding Capn13 calpain 13 NW_004955469 12497890 12569453 - 102005361 AGCD01052582;AGCD01052583;GBDI01317938;XM_013522570 XP_013378024 MODEL 10087470 protein-coding LOC106147472 putative DNA helicase ino80 NW_004955566 1378986 1382229 - 106147472 AGCD01074358;XM_013509213 XP_013364667 MODEL 8909713 protein-coding LOC102013434 uncharacterized LOC102013434 NW_004955430 2174725 2183009 + 102013434 AGCD01029156;GBDK01214826;XM_005387309 XP_005387366 MODEL 8811176 protein-coding Gnpnat1 glucosamine-phosphate N-acetyltransferase 1 ENCODES a protein that exhibits glucosamine 6-phosphate N-acetyltransferase activity (ortholog); identical protein binding (ortholog); monosaccharide binding (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); D-glucosamine metabolic process (ortholog); liver development (ortholog); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; amino sugar metabolic pathway; french type sialuria pathway; ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); RHIZOMELIC DYSPLASIA, AIN-NAZ TYPE (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog); late endosome (ortholog) NW_004955409 10406248 10424431 + 102008703 AGCD01009470;AGCD01009471;GBCQ01095032;XM_005376776;XM_005376777 XP_005376833;XP_005376834 MODEL 10240857 ncrna LOC106149503 uncharacterized LOC106149503 NW_004955447 3709368 3765306 + 106149503 AGCD01040643;AGCD01040644;AGCD01040645;AGCD01040646;AGCD01040647;AGCD01040648;AGCD01040649;AGCD01040650;AGCD01040651;AGCD01040652;AGCD01040653;AGCD01040654;AGCD01040655;AGCD01040656;AGCD01040657;AGCD01040658;XR_001235730 MODEL 10081628 ncrna LOC106150318 uncharacterized LOC106150318 NW_004955402 46337271 46342387 - 106150318 AGCD01001155;GBDJ01111390;XR_001237057 MODEL 10108900 ncrna LOC106148427 uncharacterized LOC106148427 NW_004955421 957892 974843 + 106148427 AGCD01021583;GBDJ01266091;XR_001233854 MODEL 8896454 protein-coding Lyn LYN proto-oncogene, Src family tyrosine kinase ENCODES a protein that exhibits enzyme binding (ortholog); ephrin receptor binding (ortholog); gamma-tubulin binding (ortholog); INVOLVED IN autophagy (ortholog); B cell homeostasis (ortholog); B cell proliferation (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; erythropoietin signaling pathway; ASSOCIATED WITH Cardiomegaly (ortholog); COVID-19 (ortholog); endometriosis (ortholog); FOUND IN adherens junction (ortholog); cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955454 15025967 15111142 + 102010335 AGCD01045480;AGCD01045481;AGCD01045482;AGCD01045483;GBBH01089575;XM_005396077;XM_005396078;XM_013520168 XP_005396134;XP_005396135;XP_013375622 MODEL 39131897 snrna U1 U1 spliceosomal RNA 10192222 ncrna LOC106150172 uncharacterized LOC106150172 NW_004955466 12466570 12482230 + 106150172 AGCD01051129;XR_001236824 MODEL 10373509 pseudo LOC106147619 translocation protein SEC63 homolog pseudogene NW_004955409 7859136 7860000 - 106147619 AGCD01009367 MODEL 9059074 protein-coding Hcls1 hematopoietic cell-specific Lyn substrate 1 ENCODES a protein that exhibits protein kinase binding (ortholog); protein-containing complex binding (ortholog); RNA polymerase II-specific DNA-binding transcription factor binding (ortholog); INVOLVED IN actin filament organization (ortholog); cellular response to cytokine stimulus (ortholog); erythrocyte differentiation (ortholog); ASSOCIATED WITH rheumatoid arthritis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955427 20999934 21020401 - 102003788 AGCD01027431;GBBH01090130;XM_005386490 XP_005386547 MODEL 8706812 protein-coding Mest mesoderm specific transcript INVOLVED IN fat cell differentiation (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of glycoprotein biosynthetic process (ortholog); ASSOCIATED WITH Barth syndrome (ortholog); Childhood Schizophrenia (ortholog); Weight Gain (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955479 11116705 11135061 + 102018927 AGCD01056573;AGCD01056574;GBDF01042954;XM_005402446;XM_005402447 XP_005402503;XP_005402504 MODEL 10325179 ncrna LOC106146799 uncharacterized LOC106146799 NW_004955495 5369661 5370593 - 106146799 AGCD01062002;XR_001231369 MODEL 9045991 protein-coding Ntrk1 neurotrophic receptor tyrosine kinase 1 ENCODES a protein that exhibits GPI-linked ephrin receptor activity (ortholog); identical protein binding (ortholog); kinase binding (ortholog); INVOLVED IN axon guidance (ortholog); axonogenesis involved in innervation (ortholog); B cell differentiation (ortholog); ASSOCIATED WITH Alcohol-Related Disorders (ortholog); Alcoholic Intoxication (ortholog); Alzheimer's disease (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); cytoplasm (ortholog) NW_004955545 2929704 2947579 + 102012476 AGCD01071930;GBDF01306274;XM_005411713;XM_005411714;XM_005411716 XP_005411770;XP_005411771;XP_005411773 MODEL 10169586 ncrna LOC106149767 uncharacterized LOC106149767 NW_004955405 7078352 7084429 - 106149767 AGCD01004715;GBDF01020876;XR_001236140 MODEL 626189157 mirna MIR7-1 microRNA 7-1 8994409 protein-coding LOC102023042 chromosome unknown open reading frame, human C1orf74 NW_004955489 2439927 2462748 + 102023042 AGCD01059871;GBCE01163253;XM_005404534;XM_005404535;XM_005404536;XM_005404537 XP_005404591;XP_005404592;XP_005404593;XP_005404594 MODEL 8717311 protein-coding Tns4 tensin 4 INVOLVED IN intracellular protein localization (ortholog); FOUND IN cytosol (ortholog); focal adhesion (ortholog) NW_004955451 15036773 15053199 - 102014200 AGCD01043593;GBBH01062587;XM_005394360;XM_013519361;XM_013519362;XR_001235981 XP_005394417;XP_013374815;XP_013374816 MODEL 8875705 protein-coding LOC102016406 olfactory receptor 8H1-like NW_004955511 1232068 1233015 + 102016406 AGCD01066360;XM_005408227 XP_005408284 MODEL 8868196 pseudo LOC102022321 heterogeneous nuclear ribonucleoprotein C pseudogene NW_004955521 3730039 3730772 - 102022321 AGCD01068241 MODEL 9039987 ncrna LOC102020147 uncharacterized LOC102020147 NW_004955429 7292109 7331328 + 102020147 AGCD01028588;AGCD01028589;GBDF01110939;XR_261321;XR_261322 MODEL 8748507 ncrna LOC102024721 uncharacterized LOC102024721 NW_004955437 6185154 6187147 - 102024721 AGCD01034421;GBDI01167867;XR_261860 MODEL 10149361 pseudo LOC106148836 protein SREK1IP1 pseudogene NW_004955430 3210097 3217858 - 106148836 AGCD01029195;AGCD01029196;AGCD01029197 MODEL 9030080 protein-coding Il10rb interleukin 10 receptor subunit beta ENCODES a protein that exhibits coreceptor activity (ortholog); interleukin-10 receptor activity (ortholog); INVOLVED IN interleukin-10-mediated signaling pathway (ortholog); positive regulation of cellular respiration (ortholog); positive regulation of receptor signaling pathway via JAK-STAT (ortholog); PARTICIPATES IN Interleukin-10 signaling pathway; ASSOCIATED WITH brain ischemia (ortholog); COVID-19 (ortholog); graft-versus-host disease (ortholog); FOUND IN interleukin-10 receptor complex (ortholog); signaling receptor complex (ortholog) NW_004955407 32641097 32659360 + 102019141 AGCD01007680;GBBH01051844;GBBH01051845;XM_005375678 XP_005375735 MODEL 8776221 protein-coding Gbgt1 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (FORS blood group) ENCODES a protein that exhibits globoside alpha-N-acetylgalactosaminyltransferase activity (ortholog); INVOLVED IN globoside metabolic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955513 2426623 2438019 - 102008134 AGCD01066880;GBBH01122771;XM_005408414;XM_005408415;XM_005408417;XM_013506552 XP_005408471;XP_005408472;XP_005408474;XP_013362006 MODEL 8921477 ncrna LOC102021975 uncharacterized LOC102021975 NW_004955419 27635866 27705302 + 102021975 AGCD01020444;AGCD01020445;AGCD01020446;AGCD01020447;GBDI01327220;XR_001233611;XR_001233612;XR_001233613;XR_001233614;XR_001233615;XR_001233616;XR_001233617;XR_001233618;XR_260666 MODEL 8841195 protein-coding Lypd1 LY6/PLAUR domain containing 1 ENCODES a protein that exhibits acetylcholine receptor binding (ortholog); acetylcholine receptor inhibitor activity (ortholog); INVOLVED IN acetylcholine receptor signaling pathway (ortholog); behavioral fear response (ortholog); negative regulation of protein localization to plasma membrane (ortholog); FOUND IN membrane (ortholog) NW_004955440 236012 266028 - 102028236 AGCD01036159;AGCD01036160;GBDJ01335390;XM_005390733 XP_005390790 MODEL 8810083 protein-coding Nemp1 nuclear envelope integral membrane protein 1 INVOLVED IN erythrocyte enucleation (ortholog); erythrocyte maturation (ortholog); nuclear membrane organization (ortholog); FOUND IN nuclear envelope (ortholog) NW_004955458 4802604 4817901 - 102019475 AGCD01047440;AGCD01047441;GBCE01131720;XM_005397340;XM_005397341;XM_005397342 XP_005397397;XP_005397398;XP_005397399 MODEL 10070059 protein-coding LOC106149358 translation initiation factor IF-2-like NW_004955444 4116611 4124687 + 106149358 AGCD01038803;AGCD01038804;AGCD01038805;GBCE01139554;XM_013518138 XP_013373592 MODEL 10342556 ncrna LOC106148291 uncharacterized LOC106148291 NW_004955419 24315789 24318394 + 106148291 AGCD01020340;XR_001233579 MODEL 8849067 pseudo LOC102013036 olfactory receptor 2L3-like NW_004955619 80032 80977 + 102013036 AGCD01077334 MODEL 10108894 ncrna LOC106147620 uncharacterized LOC106147620 NW_004955599 583274 584047 - 106147620 AGCD01076660;GBDJ01297674;XR_001232553 MODEL 8871301 protein-coding Efhc1 EF-hand domain containing 1 ENCODES a protein that exhibits alpha-tubulin binding (ortholog); INVOLVED IN cerebral cortex cell migration (ortholog); flagellated sperm motility (ortholog); mitotic cytokinesis (ortholog); ASSOCIATED WITH absence epilepsy (ortholog); childhood absence epilepsy (ortholog); epilepsy (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); axoneme (ortholog) NW_004955411 5624510 5676165 - 102012618 AGCD01011654;GBBH01114393;GBDF01002191;XM_013510761 XP_013366215 MODEL 8749840 protein-coding LOC102016746 translation initiation factor IF-2-like NW_004955538 2265488 2272801 - 102016746 AGCD01071112;GBDF01194187;XM_013507822 XP_013363276 MODEL 39132429 snrna U6 U6 spliceosomal RNA 8884599 protein-coding LOC102004740 glycine N-acyltransferase-like protein Keg1 NW_004955511 3618873 3627363 - 102004740 AGCD01066468;GBCQ01042492;XM_005408043 XP_005408100 MODEL 10134243 ncrna LOC106149091 uncharacterized LOC106149091 NW_004955437 13615501 13616368 + 106149091 AGCD01034663;GBDI01034753;XR_001235042 MODEL 10083140 ncrna LOC106147356 uncharacterized LOC106147356 NW_004955546 2688560 2692151 + 106147356 AGCD01072099;XR_001232211 MODEL 10163398 protein-coding LOC106146634 translation initiation factor IF-2-like NW_004955488 7405253 7406035 + 106146634 AGCD01059682;GBCB01052683;XM_013504413 XP_013359867 MODEL 9015187 protein-coding LOC102013435 endogenous retrovirus group K member 18 Pol protein-like NW_004955511 4811817 4815683 + 102013435 AGCD01066527;XM_013506412 XP_013361866 MODEL 8922742 pseudo LOC102029599 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955462 6693370 6694495 - 102029599 AGCD01049288 MODEL 8865959 pseudo LOC102020148 protein Smaug homolog 2 pseudogene NW_004955510 3048462 3051086 + 102020148 AGCD01066224 MODEL 9034602 protein-coding Tspyl4 TSPY like 4 ASSOCIATED WITH melanoma (ortholog) NW_004955526 562891 567892 + 102011580 AGCD01069241;AGCD01069242;GBBH01061852;GBCB01020779;XM_005409782 XP_005409839 MODEL 8964735 protein-coding Tnxb tenascin XB ENCODES a protein that exhibits collagen binding (ortholog); collagen fibril binding (ortholog); heparin binding (ortholog); INVOLVED IN cell-cell adhesion (ortholog); cell-matrix adhesion (ortholog); collagen fibril organization (ortholog); ASSOCIATED WITH alcoholic cardiomyopathy (ortholog); Cyanosis (ortholog); Dyspnea (ortholog); FOUND IN extracellular matrix (ortholog); extracellular region (ortholog) NW_004955437 516713 561188 - 102007932 AGCD01034140;AGCD01034141;AGCD01034142;AGCD01034143;AGCD01034144;AGCD01034145;GBDI01019761;GBDI01324921;XM_013516898 XP_013372352 MODEL 8888458 protein-coding Tst thiosulfate sulfurtransferase ENCODES a protein that exhibits 5S rRNA binding (ortholog); INVOLVED IN cellular detoxification of nitrogen compound (ortholog); epithelial cell differentiation (ortholog); rRNA import into mitochondrion (ortholog); ASSOCIATED WITH colitis (ortholog); hepatocellular carcinoma (ortholog); Prostatic Neoplasms (ortholog); FOUND IN mitochondrion (ortholog) NW_004955413 23528468 23534890 - 102025559 AGCD01014332;GBCB01007472;XM_005379180 XP_005379237 MODEL 8717172 pseudo LOC102008034 MAP3K12-binding inhibitory protein 1 pseudogene NW_004955441 160336 161394 + 102008034 AGCD01036685 MODEL 8744635 protein-coding Gnptab N-acetylglucosamine-1-phosphate transferase subunits alpha and beta ENCODES a protein that exhibits UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity (ortholog); INVOLVED IN carbohydrate phosphorylation (ortholog); lysosome organization (ortholog); N-glycan processing to lysosome (ortholog); ASSOCIATED WITH genetic disease (ortholog); glycoproteinosis (ortholog); Legg-Calve-Perthes disease (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase complex (ortholog) NW_004955405 37107902 37136993 - 102003312 AGCD01005440;AGCD01005441;AGCD01005442;GBBH01163569;GBBH01163571;XM_013518708 XP_013374162 MODEL 9053574 ncrna LOC102017163 uncharacterized LOC102017163 NW_004955439 21098027 21098747 - 102017163 AGCD01036138;GBDF01010452;XR_261998 MODEL 8814655 protein-coding Tmem182 transmembrane protein 182 INVOLVED IN myotube cell development involved in skeletal muscle regeneration (ortholog); myotube differentiation involved in skeletal muscle regeneration (ortholog); negative regulation of myoblast differentiation (ortholog); ASSOCIATED WITH COVID-19 (ortholog) NW_004955470 8173845 8218325 + 102022690 AGCD01052820;GBDF01158972;XM_005400775 XP_005400832 MODEL 8964898 protein-coding Derl3 derlin 3 ENCODES a protein that exhibits protein-containing complex binding (ortholog); signal recognition particle binding (ortholog); INVOLVED IN endoplasmic reticulum unfolded protein response (ortholog); ERAD pathway (ortholog); negative regulation of retrograde protein transport, ER to cytosol (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955455 8415868 8418753 + 102010869 AGCD01045891;GBDI01131857;XM_005396416;XM_005396417 XP_005396473;XP_005396474 MODEL 8876911 pseudo LOC102022668 R3H domain-containing protein 2 pseudogene NW_004955454 3704267 3724341 - 102022668 AGCD01045095 MODEL 8860903 protein-coding Rpl31 ribosomal protein L31 ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic large ribosomal subunit (ortholog) NW_004955470 6912109 6916232 + 102017116 AGCD01052782;GBDF01008250;XM_013522757 XP_013378211 MODEL 10367377 ncrna LOC106150173 uncharacterized LOC106150173 NW_004955467 6346583 6438167 - 106150173 AGCD01051412;AGCD01051413;GBDK01307769;XR_001236829 MODEL 8863893 protein-coding Ythdc1 YTH N6-methyladenosine RNA binding protein C1 ENCODES a protein that exhibits N6-methyladenosine-containing RNA reader activity (ortholog); RNA binding (ortholog); INVOLVED IN brown fat cell differentiation (ortholog); dosage compensation by inactivation of X chromosome (ortholog); in utero embryonic development (ortholog); FOUND IN nuclear body (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955447 4474920 4505359 - 102008360 AGCD01040720;AGCD01040721;GBBH01088991;GBDK01084131;XM_005392822 XP_005392879 MODEL 10101212 protein-coding LOC106149630 uncharacterized LOC106149630 NW_004955451 11590119 11592852 + 106149630 AGCD01043360;GBCQ01032928;XM_013519107 XP_013374561 MODEL 8723594 ncrna LOC102020878 uncharacterized LOC102020878 NW_004955453 10179788 10183274 - 102020878 AGCD01044782;GBDF01253928;XR_262725;XR_262726 MODEL 8777648 protein-coding Met MET proto-oncogene, receptor tyrosine kinase ENCODES a protein that exhibits beta-catenin binding (ortholog); hepatocyte growth factor receptor activity (ortholog); identical protein binding (ortholog); INVOLVED IN adult behavior (ortholog); brain development (ortholog); branching morphogenesis of an epithelial tube (ortholog); PARTICIPATES IN altered scatter factor/hepatocyte growth factor signaling pathway; E-cadherin signaling pathway; fibroblast growth factor signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Liver Failure (ortholog); acute myeloid leukemia (ortholog); FOUND IN basal plasma membrane (ortholog); dendrite (ortholog); excitatory synapse (ortholog) NW_004955432 22440671 22519592 + 102012232 AGCD01031261;AGCD01031262;GBCE01114216;GBDF01153999;XM_005388121;XM_005388123;XM_013516042;XR_261543 XP_005388178;XP_005388180;XP_013371496 MODEL 8895963 protein-coding Capn14 calpain 14 ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); eosinophilic esophagitis (ortholog) NW_004955469 12899174 12929408 - 102023251 AGCD01052588;AGCD01052589;GBDK01133219;XM_013522553;XM_013522554;XM_013522555;XM_013522556 XP_013378007;XP_013378008;XP_013378009;XP_013378010 MODEL 9035097 protein-coding LOC102004030 prolactin-like NW_004955990 1149 6207 - 102004030 AGCD01078817;AGCD01078818;AGCD01078819;XM_005415158 XP_005415215 MODEL 10186638 ncrna LOC106150319 uncharacterized LOC106150319 NW_004955471 6220344 6222359 - 106150319 AGCD01053122;GBDI01190702;XR_001237054 MODEL 39131901 snrna U1 U1 spliceosomal RNA 8781935 protein-coding Lrrc42 leucine rich repeat containing 42 FOUND IN nucleoplasm (ortholog) NW_004955464 5278474 5299125 - 102006755 AGCD01050003;AGCD01050004;GBBH01228032;XM_005398542 XP_005398599 MODEL 10150021 protein-coding LOC106148837 uncharacterized LOC106148837 NW_004955430 7267130 7272571 + 106148837 AGCD01029341;GBDI01309731;XM_013515567 XP_013371021 MODEL 8941523 protein-coding LOC102005082 heat shock 70 kDa protein 1B NW_004955437 356898 358735 + 102005082 AGCD01034126;GBBH01030858;GBCB01006678;XM_005390107 XP_005390164 MODEL 10161140 protein-coding LOC106146800 translation initiation factor IF-2-like NW_004955495 3896592 3899229 - 106146800 AGCD01061886;GBDF01122330;XM_013505296;XR_001231374 XP_013360750 MODEL 10110828 pseudo LOC106149768 small nuclear ribonucleoprotein E pseudogene NW_004955453 9050530 9054609 - 106149768 AGCD01044767 MODEL 9008476 protein-coding Slc39a2 solute carrier family 39 member 2 ENCODES a protein that exhibits metal ion transmembrane transporter activity (ortholog); zinc ion transmembrane transporter activity (ortholog); INVOLVED IN cadmium ion transmembrane transport (ortholog); keratinocyte differentiation (ortholog); zinc ion transmembrane transport (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog) NW_004955550 1762905 1765254 + 102029800 AGCD01072587;GBCC01045952;XM_005412076;XM_005412077 XP_005412133;XP_005412134 MODEL 39133694 mirna MIR7-3 microRNA 7-3 10380307 ncrna LOC106147473 uncharacterized LOC106147473 NW_004955566 1168632 1171220 + 106147473 AGCD01074356;XR_001232394 MODEL 8740987 protein-coding Gbp5 guanylate binding protein 5 ENCODES a protein that exhibits GTPase activity (ortholog); identical protein binding (ortholog); molecular function inhibitor activity (ortholog); INVOLVED IN activation of innate immune response (ortholog); cellular response to lipopolysaccharide (ortholog); cellular response to type II interferon (ortholog); ASSOCIATED WITH celiac disease (ortholog); Neurodevelopmental Disorders (ortholog); pulmonary tuberculosis (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); Golgi apparatus (ortholog) NW_004955423 4914430 4926850 + 102011782 AGCD01023549;AGCD01023550;GBDJ01022960;XM_005385098 XP_005385155 MODEL 8763797 protein-coding Lypd3 LY6/PLAUR domain containing 3 ENCODES a protein that exhibits laminin binding (ortholog); INVOLVED IN cell-matrix adhesion (ortholog); negative regulation of smooth muscle cell apoptotic process (ortholog); FOUND IN membrane (ortholog); plasma membrane (ortholog) NW_004955555 1229559 1233932 - 102015460 AGCD01073066;AGCD01073067;GBDK01177330;XM_005412438 XP_005412495 MODEL 10296306 protein-coding LOC106149504 uncharacterized LOC106149504 NW_004955447 14325263 14326816 - 106149504 AGCD01040999;GBDF01086673;GBDK01258414;XM_013518544 XP_013373998 MODEL 8769906 ncrna LOC102022325 uncharacterized LOC102022325 NW_004955534 3881965 3883137 - 102022325 AGCD01070605;GBDI01106511;XR_264762 MODEL 39132431 snrna U6 U6 spliceosomal RNA 10311541 protein-coding LOC106149631 translation initiation factor IF-2-like NW_004955405 40803915 40814196 + 106149631 AGCD01005529;AGCD01005530;AGCD01005531;GBDJ01092959;XM_013519110 XP_013374564 MODEL 8722473 protein-coding LOC102004742 olfactory receptor 5D18-like NW_004955511 617821 618762 + 102004742 AGCD01066336;XM_005408202 XP_005408259 MODEL 10192212 ncrna LOC106149092 uncharacterized LOC106149092 NW_004955437 11740140 11742615 + 106149092 AGCD01034581;XR_001235043 MODEL 8796878 ncrna LOC102013440 uncharacterized LOC102013440 NW_004955514 2930944 2934018 - 102013440 AGCD01067090;GBDF01225338;XR_264504 MODEL 8963761 protein-coding Capn15 calpain 15 ENCODES a protein that exhibits cysteine-type peptidase activity (ortholog); INVOLVED IN brain development (ortholog); cell adhesion (ortholog); ASSOCIATED WITH coloboma (ortholog); OCULOGASTROINTESTINAL NEURODEVELOPMENTAL SYNDROME (ortholog) NW_004955442 16649600 16674252 - 102026482 AGCD01037905;GBDK01236677;XM_005391642;XM_005391643;XM_013517816;XM_013517817 XP_005391699;XP_005391700;XP_013373270;XP_013373271 MODEL 39131546 protein-coding TOB1 transducer of ERBB2, 1 8838343 pseudo LOC102017165 small ubiquitin-related modifier 2-like NW_004955547 2270428 2274639 - 102017165 AGCD01072266 MODEL 8728616 protein-coding Il11 interleukin 11 ENCODES a protein that exhibits cytokine activity (ortholog); growth factor activity (ortholog); interleukin-11 receptor binding (ortholog); INVOLVED IN interleukin-11-mediated signaling pathway (ortholog); negative regulation of endothelial cell apoptotic process (ortholog); negative regulation of hormone secretion (ortholog); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); cystitis (ortholog); Edema (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); signaling receptor complex (ortholog) NW_004955567 868272 883563 + 102024172 AGCD01074441;AGCD01074442;AGCD01074443;GBDF01023421;XM_005413324;XM_005413325;XM_013509308;XM_013509309 XP_005413381;XP_005413382;XP_013364762;XP_013364763 MODEL 8818979 protein-coding LOC102021976 pyrethroid hydrolase Ces2e-like NW_004955484 9720410 9750518 - 102021976 AGCD01058425;AGCD01058426;AGCD01058427;XM_005403717 XP_005403774 MODEL 8931080 protein-coding Gnptg N-acetylglucosamine-1-phosphate transferase subunit gamma ENCODES a protein that exhibits protein homodimerization activity (ortholog); UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity (ortholog); INVOLVED IN carbohydrate phosphorylation (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase complex (ortholog) NW_004955442 15870409 15881552 - 102008266 AGCD01037883;AGCD01037884;GBDK01142808;XM_005391579;XM_005391580 XP_005391636;XP_005391637 MODEL 10331918 ncrna LOC106150174 uncharacterized LOC106150174 NW_004955467 12520515 12527355 - 106150174 AGCD01051642;AGCD01051643;AGCD01051644;GBCB01023944;XR_001236835 MODEL 8868211 protein-coding LOC102023047 chromosome unknown open reading frame, human C11orf68 ASSOCIATED WITH melanoma (ortholog) NW_004955422 19409368 19410742 + 102023047 AGCD01023006;GBDF01003352;GBDJ01088971;XM_013514329 XP_013369783 MODEL 8812860 pseudo LOC102016409 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955521 3670616 3671516 + 102016409 AGCD01068239 MODEL 8745195 protein-coding Nemp2 nuclear envelope integral membrane protein 2 NW_004955403 8602056 8620417 + 102026707 AGCD01001884;GBDI01170310;XM_013512264 XP_013367718 MODEL 8863340 pseudo LOC102016752 60S ribosomal protein L10a pseudogene NW_004955440 5999017 5999919 + 102016752 AGCD01036288 MODEL 10219528 ncrna LOC106147621 uncharacterized LOC106147621 NW_004955599 584191 586213 - 106147621 AGCD01076660;GBDI01353883;XR_001232554;XR_001232555 MODEL 10180623 ncrna LOC106148428 uncharacterized LOC106148428 NW_004955421 18520146 18534560 - 106148428 AGCD01022046;GBDF01041747;XR_001233855 MODEL 9046193 protein-coding Ythdc2 YTH N6-methyladenosine RNA binding protein C2 ENCODES a protein that exhibits 3'-5' RNA helicase activity (ortholog); ATP hydrolysis activity (ortholog); ATP-dependent activity, acting on RNA (ortholog); INVOLVED IN germline cell cycle switching, mitotic to meiotic cell cycle (ortholog); host-mediated activation of viral genome replication (ortholog); oocyte development (ortholog); ASSOCIATED WITH Hereditary Neoplastic Syndromes (ortholog); oligospermia (ortholog); prostate cancer (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); ribonucleoprotein granule (ortholog) NW_004955408 33380822 33448188 + 102020212 AGCD01008868;AGCD01008869;GBBH01177506;XM_005376515 XP_005376572 MODEL 8896317 protein-coding Efhc2 EF-hand domain containing 2 INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); flagellated sperm motility (ortholog); ASSOCIATED WITH autistic disorder (ortholog); ornithine carbamoyltransferase deficiency (ortholog); X-Linked Intellectual Developmental Disorders (ortholog); FOUND IN axonemal A tubule inner sheath (ortholog); axonemal microtubule (ortholog); ciliary basal body (ortholog) NW_004955516 3867542 4036049 + 102005495 AGCD01067515;AGCD01067516;GBDF01195979;XM_005408997 XP_005409054 MODEL 10141901 ncrna LOC106147765 uncharacterized LOC106147765 NW_004955410 27786655 27805067 - 106147765 AGCD01011223;GBCE01089845;XR_001232711 MODEL 10289154 ncrna LOC106147357 uncharacterized LOC106147357 NW_004955408 4433998 4461039 + 106147357 AGCD01008112;AGCD01008113;GBCE01019063;XR_001232212;XR_001232214 MODEL 8990403 protein-coding LOC102024723 isoaspartyl peptidase/L-asparaginase-like NW_004955545 2666859 2668211 - 102024723 AGCD01071915;XM_013508201 XP_013363655 MODEL 8793566 protein-coding Slc39a3 solute carrier family 39 member 3 ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN cell morphogenesis (ortholog); embryonic cranial skeleton morphogenesis (ortholog); in utero embryonic development (ortholog); FOUND IN apical plasma membrane (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); plasma membrane (ortholog) NW_004955899 808 9721 + 102023969 AGCD01078617;GBDF01044519;XM_005415143 XP_005415200 MODEL 10204514 ncrna LOC106149505 uncharacterized LOC106149505 NW_004955447 18631919 18636621 - 106149505 AGCD01041181;GBDF01089398;XR_001235739 MODEL 8838588 protein-coding Gpr6 G protein-coupled receptor 6 ENCODES a protein that exhibits sphingosine-1-phosphate receptor activity (ortholog); INVOLVED IN positive regulation of cytosolic calcium ion concentration (ortholog) NW_004955411 34781598 34783926 + 102021322 AGCD01012416;XM_005377881 XP_005377938 MODEL 8994483 protein-coding Tstd1 thiosulfate sulfurtransferase like domain containing 1 ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); FOUND IN cytoplasm (ortholog) NW_004955468 12813116 12814651 - 102024208 AGCD01052189;GBDF01162197;XM_005400229;XM_013522524;XM_013522525 XP_005400286;XP_013377978;XP_013377979 MODEL 9066446 protein-coding Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 ENCODES a protein that exhibits cAMP binding (ortholog); identical protein binding (ortholog); intracellularly cAMP-activated cation channel activity (ortholog); INVOLVED IN apical protein localization (ortholog); cellular response to cAMP (ortholog); cellular response to interferon-beta (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); anxiety disorder (ortholog); Ataxia (ortholog); FOUND IN apical dendrite (ortholog); axon (ortholog); axon terminus (ortholog) NW_004955446 17146915 17457843 + 102028912 AGCD01040370;AGCD01040371;GBDF01269259;XM_005392730 XP_005392787 MODEL 9066868 protein-coding LOC102004031 uncharacterized LOC102004031 NW_004955452 2163418 2166480 - 102004031 AGCD01043879;GBDF01008884;XM_005394728;XM_005394730;XM_013519464;XM_013519465;XM_013519466;XM_013519467;XM_013519468 XP_005394785;XP_005394787;XP_013374918;XP_013374919;XP_013374920;XP_013374921;XP_013374922 MODEL 39131816 snrna U1 U1 spliceosomal RNA 8905819 protein-coding Syngr4 synaptogyrin 4 NW_004955559 2090259 2096871 - 102011368 AGCD01073691;GBDK01027658;XM_005412956;XM_005412957;XM_013509043;XM_013509044 XP_005413013;XP_005413014;XP_013364497;XP_013364498 MODEL 8723234 protein-coding Tmem183a transmembrane protein 183A ASSOCIATED WITH prostate cancer (ortholog) NW_004955406 39029390 39044502 + 102005892 AGCD01006618;GBDF01003831;XM_005375243;XM_005375244 XP_005375300;XP_005375301 MODEL 9055088 protein-coding Rpl32 ribosomal protein L32 ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); cytoplasmic translation (ortholog); liver regeneration (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; FOUND IN cytoplasm (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic large ribosomal subunit (ortholog) NW_004955429 17886048 17890536 + 102014697 AGCD01028869;GBCQ01010569;XM_005387092 XP_005387149 MODEL 8842814 protein-coding Ntrk2 neurotrophic receptor tyrosine kinase 2 ENCODES a protein that exhibits brain-derived neurotrophic factor binding (ortholog); brain-derived neurotrophic factor receptor activity (ortholog); neurotrophin binding (ortholog); INVOLVED IN brain-derived neurotrophic factor receptor signaling pathway (ortholog); cellular response to amino acid stimulus (ortholog); cellular response to brain-derived neurotrophic factor stimulus (ortholog); PARTICIPATES IN brain-derived neurotrophic factor signaling pathway; ASSOCIATED WITH alcohol dependence (ortholog); alcohol use disorder (ortholog); alcohol withdrawal syndrome (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cell surface (ortholog) NW_004955432 2284283 2629631 - 102028671 AGCD01030614;AGCD01030615;AGCD01030616;GBDJ01300372;XM_005387931;XM_005387932;XM_005387933;XM_005387934;XM_013516029 XP_005387988;XP_005387989;XP_005387990;XP_005387991;XP_013371483 MODEL 8766178 ncrna LOC102005085 uncharacterized LOC102005085 NW_004955442 14237107 14240594 + 102005085 AGCD01037806;GBDF01150434;XR_001235364;XR_262140 MODEL 10153357 pseudo LOC106146635 uncharacterized LOC106146635 NW_004955488 8897115 8903768 + 106146635 AGCD01059735 MODEL 8874956 pseudo LOC102020879 DNA excision repair protein ERCC-6-like pseudogene NW_004955406 11738677 11748591 - 102020879 AGCD01005895;XM_005374828 MODEL 9009851 protein-coding Metap1 methionyl aminopeptidase 1 ENCODES a protein that exhibits aminopeptidase activity (ortholog); initiator methionyl aminopeptidase activity (ortholog); INVOLVED IN platelet aggregation (ortholog); protein maturation (ortholog); ASSOCIATED WITH intellectual disability (ortholog) NW_004955405 9211813 9302001 + 102017300 AGCD01004764;AGCD01004765;AGCD01004766;AGCD01004767;AGCD01004768;GBDF01046126;XM_013519385 XP_013374839 MODEL 8700718 protein-coding LOC102020150 olfactory receptor 5D18-like NW_004955511 4966254 4966832 + 102020150 AGCD01066541;GBBH01201753;XM_005408081 XP_005408138 MODEL 8974701 pseudo LOC102008035 epimerase family protein SDR39U1 pseudogene NW_004955548 325489 327240 - 102008035 AGCD01072330 MODEL 10236592 ncrna LOC106150320 uncharacterized LOC106150320 NW_004955471 7628393 7631354 - 106150320 AGCD01053157;GBDF01249699;XR_001237055 MODEL 8982673 ncrna LOC102022671 uncharacterized LOC102022671 NW_004955407 26763176 26800372 + 102022671 AGCD01007537;GBDF01013649;XR_259589 MODEL 10235086 pseudo LOC106149359 uncharacterized LOC106149359 NW_004955444 5488079 5494424 - 106149359 AGCD01038831;AGCD01038832 MODEL 9045847 protein-coding Des desmin ENCODES a protein that exhibits cytoskeletal protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN intermediate filament organization (ortholog); nuclear envelope organization (ortholog); ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); arrhythmogenic right ventricular cardiomyopathy (ortholog); arrhythmogenic right ventricular dysplasia 9 (ortholog); FOUND IN cardiac myofibril (ortholog); cell tip (ortholog); cell-cell junction (ortholog) NW_004955453 14039502 14046572 - 102006976 AGCD01044857;GBDK01160362;XM_005395527 XP_005395584 MODEL 8989040 protein-coding Efhd1 EF-hand domain family member D1 ENCODES a protein that exhibits calcium ion sensor activity (ortholog); INVOLVED IN neuron projection development (ortholog); regulation of cellular hyperosmotic salinity response (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); Salivary Gland Neoplasms (ortholog); syndromic microphthalmia 5 (ortholog); FOUND IN Golgi apparatus (ortholog); mitochondrial inner membrane (ortholog) NW_004955453 3344919 3378157 - 102004779 AGCD01044657;GBCQ01011819;XM_013519767;XM_013519768 XP_013375221;XP_013375222 MODEL 10186594 ncrna LOC106148292 uncharacterized LOC106148292 NW_004955419 800032 802469 - 106148292 AGCD01019612;GBBH01107399;XR_001233581 MODEL 10077664 protein-coding LOC106148838 dapper homolog 3-like NW_004955430 11991855 11992611 - 106148838 AGCD01029472;GBDF01087184;XM_013515568 XP_013371022 MODEL 8726769 protein-coding LOC102013037 solute carrier organic anion transporter family member 5A1-like NW_004955655 54988 70910 - 102013037 AGCD01077842;GBCB01004342;GBDF01097203;XM_013510175 XP_013365629 MODEL 8773265 pseudo LOC102017166 microtubule-associated protein RP/EB family member 1 pseudogene NW_004955442 13267206 13268206 + 102017166 AGCD01037766;XM_005391316 MODEL 10108196 protein-coding LOC106149769 uncharacterized LOC106149769 NW_004955453 11812691 11827685 + 106149769 AGCD01044816;AGCD01044817;XM_013519764 XP_013375218 MODEL 151707894 mirna MIR708 microRNA 708 9042676 ncrna LOC102021977 uncharacterized LOC102021977 NW_004955486 3990448 3991077 + 102021977 AGCD01059050;GBDF01308051;XR_263950 MODEL 10337377 pseudo LOC106150175 60S ribosomal protein L17 pseudogene NW_004955467 650776 651307 + 106150175 AGCD01051230 MODEL 10201637 ncrna LOC106147474 uncharacterized LOC106147474 NW_004955566 1517647 1519621 - 106147474 AGCD01074364;GBBH01073221;XR_001232395 MODEL 8880245 protein-coding Il11ra interleukin 11 receptor subunit alpha ENCODES a protein that exhibits interleukin-11 binding (ortholog); interleukin-11 receptor activity (ortholog); INVOLVED IN cytokine-mediated signaling pathway (ortholog); decidualization (ortholog); developmental process (ortholog); ASSOCIATED WITH Craniosynostosis and Dental Anomalies (ortholog); Craniosynostosis Syndrome, Autosomal Recessive (ortholog); Heat Stroke (ortholog); FOUND IN extracellular region (ortholog); membrane (ortholog); signaling receptor complex (ortholog) NW_004955472 1474802 1485352 - 102021002 AGCD01053395;GBBH01063003;XM_005401045;XM_013523015;XM_013523016;XM_013523017;XM_013523018 XP_005401102;XP_013378469;XP_013378470;XP_013378471;XP_013378472 MODEL 8745965 ncrna LOC102029600 uncharacterized LOC102029600 NW_004955464 4809588 4816074 + 102029600 AGCD01049995;GBDK01262996;XR_263197 MODEL 8889200 protein-coding Desi1 desumoylating isopeptidase 1 ENCODES a protein that exhibits deSUMOylase activity (ortholog); identical protein binding (ortholog); importin-alpha family protein binding (ortholog); INVOLVED IN protein desumoylation (ortholog); protein export from nucleus (ortholog); regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955413 27115130 27135625 - 102021117 AGCD01014495;GBDK01134746;XM_005379358;XM_005379359 XP_005379415;XP_005379416 MODEL 10201767 ncrna LOC106147622 uncharacterized LOC106147622 NW_004955599 656013 659619 - 106147622 AGCD01076665;GBBH01021103;XR_001232556 MODEL 39132432 snrna U6 U6 spliceosomal RNA 8973938 protein-coding Lypd4 LY6/PLAUR domain containing 4 INVOLVED IN binding of sperm to zona pellucida (ortholog); single fertilization (ortholog); sperm migration through the uterotubal junction (ortholog); FOUND IN acrosomal vesicle (ortholog) NW_004955555 989234 994901 + 102010315 AGCD01073055;GBDF01008820;XM_005412423;XM_005412425;XM_005412426;XM_013508729;XM_013508730;XM_013508731;XM_013508732;XM_013508733 XP_005412480;XP_005412482;XP_005412483;XP_013364183;XP_013364184;XP_013364185;XP_013364186;XP_013364187 MODEL 10205569 ncrna LOC106147358 uncharacterized LOC106147358 NW_004955546 2807548 2812322 + 106147358 AGCD01072101;GBDI01066469;XR_001232213 MODEL 10381397 ncrna LOC106149093 uncharacterized LOC106149093 NW_004955437 3991894 3994569 + 106149093 AGCD01034358;GBDF01208621;XR_001235044 MODEL 8941768 protein-coding Ythdf1 YTH N6-methyladenosine RNA binding protein F1 ENCODES a protein that exhibits N6-methyladenosine-containing RNA reader activity (ortholog); ribosome binding (ortholog); INVOLVED IN learning (ortholog); memory (ortholog); mRNA destabilization (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); idiopathic pulmonary fibrosis (ortholog); multiple myeloma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); P-body (ortholog) NW_004955528 935182 951722 + 102018527 AGCD01069548;AGCD01069549;GBDF01163201;XM_005409994;XM_005409995 XP_005410051;XP_005410052 MODEL 8776768 ncrna LOC102024724 uncharacterized LOC102024724 NW_004955444 6874976 6878006 + 102024724 AGCD01038876;GBDF01121326;XR_262248 MODEL 8795371 protein-coding Slc39a4 solute carrier family 39 member 4 ENCODES a protein that exhibits identical protein binding (ortholog); metal ion binding (ortholog); zinc ion binding (ortholog); INVOLVED IN cellular response to zinc ion starvation (ortholog); intracellular zinc ion homeostasis (ortholog); zinc ion transmembrane transport (ortholog); ASSOCIATED WITH acrodermatitis (ortholog); acrodermatitis enteropathica (ortholog); genetic disease (ortholog); FOUND IN apical plasma membrane (ortholog); cytoplasmic vesicle (ortholog); endosome (ortholog) NW_004955454 3041316 3047419 - 102005106 AGCD01045048;AGCD01045049;GBDK01284146;XM_005395883 XP_005395940 MODEL 10174674 ncrna LOC106149506 uncharacterized LOC106149506 NW_004955447 17877377 17879659 - 106149506 AGCD01041143;AGCD01041144;GBDF01046269;XR_001235740;XR_001235741;XR_001235742 MODEL 10246370 ncrna LOC106146801 uncharacterized LOC106146801 NW_004955495 6660574 6663201 + 106146801 AGCD01062087;GBDF01105340;XR_001231375;XR_001231376 MODEL 8878086 protein-coding Metap1d methionyl aminopeptidase type 1D, mitochondrial INVOLVED IN post-translational protein modification (ortholog); FOUND IN mitochondrion (ortholog) NW_004955449 2929483 3016103 - 102016539 AGCD01041839;AGCD01041840;AGCD01041841;AGCD01041842;AGCD01041843;GBCE01025179;XM_005393221;XM_005393222;XM_005393223 XP_005393278;XP_005393279;XP_005393280 MODEL 10120769 ncrna LOC106149360 uncharacterized LOC106149360 NW_004955444 17080320 17081530 + 106149360 AGCD01039208;GBCE01147050;XR_001235497 MODEL 9021820 protein-coding Capn2 calpain 2 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent cysteine-type endopeptidase activity (ortholog); calcium-dependent cysteine-type endopeptidase inhibitor activity (ortholog); INVOLVED IN behavioral response to pain (ortholog); blastocyst development (ortholog); cellular response to amino acid stimulus (ortholog); PARTICIPATES IN the proteolytic pathway involving calcium-dependent proteases; ASSOCIATED WITH acute myeloid leukemia (ortholog); Alzheimer's disease (ortholog); Anthracycline-induced Cardiotoxicity (ortholog); FOUND IN calpain complex (ortholog); cell projection (ortholog); chromatin (ortholog) NW_004955520 1287829 1315318 - 102003055 AGCD01068050;GBCQ01012082;GBDK01013075;XM_013507063 XP_013362517 MODEL 8848221 protein-coding Nenf neudesin neurotrophic factor ENCODES a protein that exhibits growth factor activity (ortholog); INVOLVED IN negative regulation of appetite (ortholog); positive regulation of MAPK cascade (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular region (ortholog); mitochondrion (ortholog) NW_004955406 5025732 5030938 - 102014113 AGCD01005709;AGCD01005710;GBBH01033950;GBCQ01010802;XM_013520159 XP_013375613 MODEL 8784774 protein-coding Rpl34 ribosomal protein L34 ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog) NW_004955496 1374959 1378971 - 102028986 AGCD01062252;AY533224;GBDK01006354;XM_005406197 AAS59426;XP_005406254 MODEL 8758421 protein-coding Tmem184a transmembrane protein 184A INVOLVED IN germ-line sex determination (ortholog); regulation of protein localization (ortholog); regulation of secretion (ortholog); FOUND IN early endosome membrane (ortholog); endosome (ortholog); plasma membrane (ortholog) NW_004955460 9169599 9182701 - 102019036 AGCD01048541;GBCE01108634;XM_005397807;XM_013521202;XM_013521203;XM_013521204 XP_005397864;XP_013376656;XP_013376657;XP_013376658 MODEL 8705388 ncrna LOC102022326 uncharacterized LOC102022326 NW_004955538 1051081 1056074 - 102022326 AGCD01071043;GBDF01261166;XR_264794 MODEL 8824257 ncrna LOC102016755 uncharacterized LOC102016755 NW_004955442 15328395 15338155 - 102016755 AGCD01037866;GBDI01165395;XR_262152 MODEL 10080233 ncrna LOC106148429 uncharacterized LOC106148429 NW_004955421 21623437 21628343 + 106148429 AGCD01022113;GBDJ01212981;XR_001233856;XR_001233857 MODEL 10324252 ncrna LOC106147766 uncharacterized LOC106147766 NW_004955410 29798966 29810574 + 106147766 AGCD01011295;AGCD01011296;GBDF01154068;XR_001232712 MODEL 10140589 ncrna LOC106149632 uncharacterized LOC106149632 NW_004955451 12050847 12053147 + 106149632 AGCD01043373;GBBH01078224;XR_001235945 MODEL 8792231 protein-coding Lrrc43 leucine rich repeat containing 43 ASSOCIATED WITH COVID-19 (ortholog) NW_004955482 6366437 6375697 - 102029516 AGCD01057388;GBCE01085230;GBDF01081449;XM_013503751;XM_013503752;XR_001231000 XP_013359205;XP_013359206 MODEL 8817113 ncrna LOC102029604 uncharacterized LOC102029604 NW_004955466 11889551 11910778 + 102029604 AGCD01051105;GBDF01075363;XR_263314 MODEL 39131822 snrna U1 U1 spliceosomal RNA 9028639 protein-coding Gpr61 G protein-coupled receptor 61 ENCODES a protein that exhibits arrestin family protein binding (ortholog); INVOLVED IN ligand-independent adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); FOUND IN endosome (ortholog); endosome membrane (ortholog); plasma membrane (ortholog) NW_004955435 12929709 12961755 + 102003581 AGCD01033174;AGCD01033175;AGCD01033176;GBBH01078341;XM_005388870;XR_001234859 XP_005388927 MODEL 8980539 ncrna LOC102004039 uncharacterized LOC102004039 NW_004955407 34849285 34853966 + 102004039 AGCD01007727;GBDF01120859;XR_001231203 MODEL 10154744 protein-coding LOC106150321 zinc finger protein ZFPM1-like NW_004955471 7026730 7029784 + 106150321 AGCD01053133;GBDF01192432;XM_013522904 XP_013378358 MODEL 8807562 protein-coding Hcn2 hyperpolarization activated cyclic nucleotide gated potassium and sodium channel 2 ENCODES a protein that exhibits identical protein binding (ortholog); intracellularly cAMP-activated cation channel activity (ortholog); molecular adaptor activity (ortholog); INVOLVED IN ammonium transmembrane transport (ortholog); cellular response to aldosterone (ortholog); cellular response to cAMP (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); Chronic Cerebral Hypoperfusion (ortholog); Dental Pulp Exposure (ortholog); FOUND IN axon (ortholog); dendrite membrane (ortholog); dendritic shaft (ortholog) NW_004955495 7124060 7143730 - 102016722 AGCD01062119;AGCD01062120;GBBH01120908;GBDI01196254;XM_013505311 XP_013360765 MODEL 9028449 protein-coding Tstd2 thiosulfate sulfurtransferase like domain containing 2 NW_004955419 27820265 27841210 + 102023477 AGCD01020448;GBDJ01031238;XM_005382843;XM_005382844;XM_005382845;XM_005382847;XM_005382848 XP_005382900;XP_005382901;XP_005382902;XP_005382904;XP_005382905 MODEL 8724815 ncrna LOC102016414 uncharacterized LOC102016414 NW_004955527 3800944 3816667 - 102016414 AGCD01069485;AGCD01069486;GBDF01176376;XR_264675 MODEL 8801000 protein-coding Gbx1 gastrulation brain homeobox 1 INVOLVED IN adult walking behavior (ortholog); neuron fate commitment (ortholog); proprioception (ortholog); ASSOCIATED WITH long QT syndrome (ortholog); FOUND IN nucleus (ortholog) NW_004955491 5575836 5592804 - 102030540 AGCD01060490;AGCD01060491;GBDF01020669;GBDF01039541;XM_013504621 XP_013360075 MODEL 10270173 pseudo LOC106148839 protein kinase C iota type pseudogene NW_004955430 17797770 17798762 - 106148839 AGCD01029674 MODEL 8914759 protein-coding Ntrk3 neurotrophic receptor tyrosine kinase 3 ENCODES a protein that exhibits GPI-linked ephrin receptor activity (ortholog); neurotrophin receptor activity (ortholog); p53 binding (ortholog); INVOLVED IN cell surface receptor protein tyrosine kinase signaling pathway (ortholog); cellular response to retinoic acid (ortholog); circadian rhythm (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); adenoid cystic carcinoma (ortholog); Alcohol-Related Disorders (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); nucleolus (ortholog) NW_004955416 16652931 17018188 + 102009716 AGCD01017360;AGCD01017361;AGCD01017362;AGCD01017363;AGCD01017364;AGCD01017365;GBCE01130254;XM_005381579;XM_005381580;XM_005381581;XM_005381583 XP_005381636;XP_005381637;XP_005381638;XP_005381640 MODEL 8814128 protein-coding LOC102005087 protein phosphatase 1 regulatory subunit 37 NW_004955555 2117438 2165515 + 102005087 AGCD01073130;AGCD01073131;GBBH01124509;XM_005412493;XM_013508759 XP_005412550;XP_013364213 MODEL 8977400 pseudo LOC102004744 UMP-CMP kinase pseudogene NW_004955515 4019058 4025494 - 102004744 AGCD01067313 MODEL 150537122 mirna MIR744 microRNA 744 10330597 ncrna LOC106146636 uncharacterized LOC106146636 NW_004955488 7904109 7907941 - 106146636 AGCD01059698;GBDF01257687;XR_001231165 MODEL 8891533 protein-coding LOC102013443 pancreatic alpha-amylase NW_004955435 8083712 8090769 - 102013443 AGCD01032994;GBDF01171554;XM_005388816;XM_005388817;XM_005388818 XP_005388873;XP_005388874;XP_005388875 MODEL 9064021 protein-coding LOC102020887 olfactory receptor 6C3 NW_004955458 2745873 2746844 - 102020887 AGCD01047243;XM_005397500 XP_005397557 MODEL 8954174 protein-coding Tob1 transducer of ERBB2, 1 ENCODES a protein that exhibits receptor tyrosine kinase binding (ortholog); SMAD binding (ortholog); transcription corepressor activity (ortholog); INVOLVED IN negative regulation of BMP signaling pathway (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of nuclear-transcribed mRNA poly(A) tail shortening (ortholog); ASSOCIATED WITH Chloracne (ortholog); endometriosis (ortholog); Experimental Neoplasms (ortholog); FOUND IN CCR4-NOT complex (ortholog); cytoplasm (ortholog) NW_004955451 10950270 10963183 + 102029034 AGCD01043336;AGCD01043337;AGCD01043338;GBDK01131967;XM_013519063 XP_013374517 MODEL 39132433 snrna U6 U6 spliceosomal RNA 10361936 ncrna LOC106149094 uncharacterized LOC106149094 NW_004955437 4328886 4331322 + 106149094 AGCD01034364;XR_001235045;XR_001235046;XR_001235047;XR_001235048 MODEL 8878281 protein-coding Lypd5 LY6/PLAUR domain containing 5 NW_004955555 1519388 1523075 - 102022024 AGCD01073085;GBCC01027914;XM_005412460 XP_005412517 MODEL 8857539 protein-coding LOC102008036 myelin P2 protein NW_004955444 162419 167955 + 102008036 AGCD01038653;GBBH01135207;XM_005392055 XP_005392112 MODEL 8931290 protein-coding Gnrh1 gonadotropin releasing hormone 1 ENCODES a protein that exhibits gonadotropin hormone-releasing hormone activity (ortholog); INVOLVED IN estrous cycle (ortholog); female pregnancy (ortholog); male sex determination (ortholog); ASSOCIATED WITH Adrenal Gland Neoplasms (ortholog); adult respiratory distress syndrome (ortholog); amenorrhea (ortholog); FOUND IN axon terminus (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); dendrite (ortholog) NW_004955403 48341731 48346595 - 102022992 AGCD01002917;GBDJ01325795;XM_005373712;XM_013514085 XP_005373769;XP_013369539 MODEL 8789331 protein-coding Efhd2 EF-hand domain family member D2 ENCODES a protein that exhibits actin filament binding (ortholog); calcium ion binding (ortholog); calcium ion sensor activity (ortholog); INVOLVED IN actin crosslink formation (ortholog); ASSOCIATED WITH Binge Drinking (ortholog); FOUND IN lamellipodium (ortholog) NW_004955527 2724607 2739324 - 102013754 AGCD01069464;GBBH01060768;XM_005409875 XP_005409932 MODEL 8947781 protein-coding LOC102023050 zinc finger protein 709-like NW_004955494 8410747 8423126 - 102023050 AGCD01061584;GBDF01210638;XM_005405519;XM_005405520 XP_005405576;XP_005405577 MODEL 8948477 protein-coding Cttnbp2nl CTTNBP2 N-terminal like ENCODES a protein that exhibits protein phosphatase 2A binding (ortholog); INVOLVED IN negative regulation of transmembrane transport (ortholog); negative regulation of transporter activity (ortholog); protein dephosphorylation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN actin cytoskeleton (ortholog); FAR/SIN/STRIPAK complex (ortholog) NW_004955435 15858056 15910486 + 102030233 AGCD01033287;AGCD01033288;AGCD01033289;GBCQ01153403;XM_005388955;XM_005388956;XM_005388957 XP_005389012;XP_005389013;XP_005389014 MODEL 10078150 ncrna LOC106149361 uncharacterized LOC106149361 NW_004955444 6823095 6828521 - 106149361 AGCD01038875;XR_001235498;XR_001235499 MODEL 8958593 protein-coding LOC102017168 mesothelin-like protein NW_004955442 16429918 16440136 + 102017168 AGCD01037900;GBBH01146203;XM_005391610 XP_005391667 MODEL 10279190 ncrna LOC106147475 uncharacterized LOC106147475 NW_004955566 1364512 1369326 - 106147475 AGCD01074358;GBCB01007922;XR_001232396 MODEL 9026561 ncrna LOC102020154 uncharacterized LOC102020154 NW_004955431 15144542 15164404 - 102020154 AGCD01030347;GBDF01276795;XR_001234574 MODEL 10378155 ncrna LOC106147624 uncharacterized LOC106147624 NW_004955599 676809 681639 + 106147624 AGCD01076666;GBBH01168962;XR_001232559;XR_001232560;XR_001232561 MODEL 8723601 protein-coding Rpl35 ribosomal protein L35 ENCODES a protein that exhibits ribonucleoprotein complex binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN cellular response to UV-B (ortholog); cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Diamond-Blackfan anemia 19 (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of rough endoplasmic reticulum membrane (ortholog); cytosolic large ribosomal subunit (ortholog) NW_004955419 3371109 3374555 + 102021014 AGCD01019719;GBDF01006252;XM_005382482 XP_005382539 MODEL 9008672 protein-coding Desi2 desumoylating isopeptidase 2 ENCODES a protein that exhibits cysteine-type deubiquitinase activity (ortholog); K48-linked deubiquitinase activity (ortholog); K63-linked deubiquitinase activity (ortholog); ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN cytoplasm (ortholog) NW_004955406 7881815 7894690 + 102007966 AGCD01005779;GBBH01150375;GBCC01014190;XM_013520388 XP_013375842 MODEL 10174658 ncrna LOC106147767 uncharacterized LOC106147767 NW_004955410 5689775 5712476 + 106147767 AGCD01010689;GBDF01041530;XR_001232713 MODEL 10144613 protein-coding LOC106147359 translation initiation factor IF-2-like NW_004955547 62642 121802 - 106147359 AGCD01072125;AGCD01072126;AGCD01072127;AGCD01072128;AGCD01072129;AGCD01072130;AGCD01072131;AGCD01072132;GBDF01030874;XM_013508440 XP_013363894 MODEL 8988673 protein-coding LOC102024728 leukocyte immunoglobulin-like receptor subfamily A member 6 NW_004955567 1241159 1251299 - 102024728 AGCD01074465;XM_013509226 XP_013364680 MODEL 10248259 ncrna LOC106148293 uncharacterized LOC106148293 NW_004955419 3051848 3055318 - 106148293 AGCD01019701;GBCB01110954;XR_001233592 MODEL 8853686 protein-coding Synj1 synaptojanin 1 ENCODES a protein that exhibits EH domain binding (ortholog); inositol-1,4,5-trisphosphate 5-phosphatase activity (ortholog); phosphatidylinositol phosphate 5-phosphatase activity (ortholog); INVOLVED IN 1-phosphatidyl-1D-myo-inositol 4,5-bisphosphate catabolic process (ortholog); inositol trisphosphate metabolic process (ortholog); learning (ortholog); PARTICIPATES IN altered clathrin-dependent synaptic vesicle endocytosis; clathrin-dependent synaptic vesicle endocytosis; ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH basal cell carcinoma (ortholog); developmental and epileptic encephalopathy 1 (ortholog); developmental and epileptic encephalopathy 53 (ortholog); FOUND IN clathrin coat of coated pit (ortholog); glutamatergic synapse (ortholog); membrane (ortholog) NW_004955407 32094076 32175676 - 102017096 AGCD01007669;GBDI01295468;XM_013504161;XM_013504168;XM_013504171;XM_013504180;XM_013504181;XM_013504183;XM_013504187;XM_013504192;XM_013504196;XM_013504200 XP_013359615;XP_013359622;XP_013359625;XP_013359634;XP_013359635;XP_013359637;XP_013359641;XP_013359646;XP_013359650;XP_013359654 MODEL 8815276 protein-coding Ythdf2 YTH N6-methyladenosine RNA binding protein F2 ENCODES a protein that exhibits C5-methylcytidine-containing RNA reader activity (ortholog); N6-methyladenosine-containing RNA reader activity (ortholog); INVOLVED IN gamete generation (ortholog); hematopoietic stem cell proliferation (ortholog); mRNA catabolic process (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); cytoplasmic stress granule (ortholog) NW_004955452 7783398 7815468 + 102020630 AGCD01044194;AGCD01044195;AGCD01044196;AGCD01044197;GBDF01119971;XM_013519715 XP_013375169 MODEL 10205565 ncrna LOC106146802 uncharacterized LOC106146802 NW_004955495 3175664 3176256 - 106146802 AGCD01061833;GBDF01080515;XR_001231380 MODEL 8904476 protein-coding Metap2 methionyl aminopeptidase 2 ENCODES a protein that exhibits aminopeptidase activity (ortholog); metalloexopeptidase activity (ortholog); INVOLVED IN protein processing (ortholog); regulation of translational initiation (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955405 31942427 31976678 + 102005217 AGCD01005318;AGCD01005319;AGCD01005320;AGCD01005321;AGCD01005322;GBDF01003406;XM_005374484 XP_005374541 MODEL 9068204 pseudo LOC102021979 26S proteasome non-ATPase regulatory subunit 14 pseudogene NW_004955488 2643464 2644330 - 102021979 AGCD01059549 MODEL 10111450 protein-coding LOC106148840 uncharacterized LOC106148840 NW_004955430 20061933 20231102 + 106148840 AGCD01029737;AGCD01029738;AGCD01029739;AGCD01029740;AGCD01029741;GBDI01377316;XM_013515569 XP_013371023 MODEL 8717521 protein-coding Capn3 calpain 3 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent cysteine-type endopeptidase activity (ortholog); catalytic activity (ortholog); INVOLVED IN calcium-dependent self proteolysis (ortholog); cellular response to calcium ion (ortholog); cellular response to salt stress (ortholog); ASSOCIATED WITH Autosomal Dominant Limb-Girdle Muscular Dystrophy Type 4 (ortholog); autosomal recessive limb-girdle muscular dystrophy (ortholog); autosomal recessive limb-girdle muscular dystrophy type 2A (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); myofibril (ortholog) NW_004955416 9070479 9121099 + 102021120 AGCD01017075;AGCD01017076;AGCD01017077;GBCB01004371;XM_005381335;XM_005381338;XM_005381339;XM_005381340;XM_005381342;XM_013512462;XM_013512463;XM_013512464;XM_013512466 XP_005381392;XP_005381395;XP_005381396;XP_005381397;XP_005381399;XP_013367916;XP_013367917;XP_013367918;XP_013367920 MODEL 8880790 protein-coding Il12a interleukin 12A ENCODES a protein that exhibits cytokine activity (ortholog); growth factor activity (ortholog); interleukin-12 beta subunit binding (ortholog); INVOLVED IN cell migration (ortholog); cell population proliferation (ortholog); cellular response to lipopolysaccharide (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-27 signaling pathway; ASSOCIATED WITH asthma (ortholog); Chronic Hepatitis B (ortholog); Experimental Autoimmune Encephalomyelitis (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955448 10611131 10617911 + 102022032 AGCD01041496;GBCE01162263;GBDK01148444;XM_005393161 XP_005393218 MODEL 9057687 protein-coding Hcn3 hyperpolarization activated cyclic nucleotide gated potassium channel 3 ENCODES a protein that exhibits intracellularly cAMP-activated cation channel activity (ortholog); voltage-gated potassium channel activity (ortholog); voltage-gated sodium channel activity (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to dopamine (ortholog); potassium ion transmembrane transport (ortholog); ASSOCIATED WITH Dental Pulp Exposure (ortholog); Experimental Diabetes Mellitus (ortholog); Parkinson's disease (ortholog); FOUND IN axon (ortholog); cone cell pedicle (ortholog); dendrite (ortholog) NW_004955545 1730940 1744439 + 102005419 AGCD01071869;GBDF01211990;XM_005411599;XM_013508343 XP_005411656;XP_013363797 MODEL 8922735 protein-coding Gbx2 gastrulation brain homeobox 2 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II core promoter sequence-specific DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN autonomic nervous system development (ortholog); axon guidance (ortholog); branching involved in blood vessel morphogenesis (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); FOUND IN nucleus (ortholog) NW_004955453 538066 541415 + 102029586 AGCD01044594;AGCD01044595;XM_013519759 XP_013375213 MODEL 10395198 ncrna LOC106148430 uncharacterized LOC106148430 NW_004955421 21629874 21639226 + 106148430 AGCD01022113;GBCB01017723;XR_001233858;XR_001233859 MODEL 9031817 ncrna LOC102016767 uncharacterized LOC102016767 NW_004955450 1451513 1455963 + 102016767 AGCD01042364;GBDF01226293;XR_262517 MODEL 8831256 protein-coding Nts neurotensin ENCODES a protein that exhibits neuropeptide receptor binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN cellular response to dexamethasone stimulus (ortholog); cellular response to lithium ion (ortholog); cellular response to nerve growth factor stimulus (ortholog); ASSOCIATED WITH Bradycardia (ortholog); breast ductal carcinoma (ortholog); Catalepsy (ortholog); FOUND IN axon terminus (ortholog); neuronal cell body (ortholog) NW_004955405 23696258 23758487 + 102006537 AGCD01005134;AGCD01005135;AGCD01005136;GBDK01406517;XM_005374412;XM_013518119 XP_005374469;XP_013373573 MODEL 39133689 mirna MIR761 microRNA 761 8934940 protein-coding LOC102022673 claudin-3 NW_004955456 13999561 14000545 + 102022673 AGCD01046631;GBDF01144954;GBDJ01020813;XM_005396764 XP_005396821 MODEL 10302040 protein-coding LOC106149633 translation initiation factor IF-2-like NW_004955451 12258346 12264919 + 106149633 AGCD01043382;GBDF01249705;GBDF01249706;XM_013519113 XP_013374567 MODEL 8974772 ncrna LOC102013039 uncharacterized LOC102013039 NW_004955403 57271566 57272877 + 102013039 AGCD01003149;GBCB01111792;XR_259280 MODEL 39131829 snrna U1 U1 spliceosomal RNA 10393154 protein-coding LOC106149507 RE1-silencing transcription factor-like NW_004955447 14179075 14182922 - 106149507 AGCD01040988;GBCC01049018;GBCE01175857;XM_013518552 XP_013374006 MODEL 8853230 protein-coding Lrrc45 leucine rich repeat containing 45 INVOLVED IN cilium assembly (ortholog); protein localization to centriolar satellite (ortholog); FOUND IN centriole (ortholog); centrosome (ortholog); ciliary basal body (ortholog) NW_004955506 1142090 1149502 - 102019515 AGCD01065247;XM_005407229;XM_013506043;XM_013506044 XP_005407286;XP_013361497;XP_013361498 MODEL 39132434 snrna U6 U6 spliceosomal RNA 8911809 pseudo LOC102004041 cofilin-2 pseudogene NW_004955408 16489538 16489996 - 102004041 AGCD01008440 MODEL 10361312 pseudo LOC106150176 arginine--tRNA ligase, cytoplasmic-like NW_004955467 1121682 1130187 + 106150176 AGCD01051251 MODEL 9050621 protein-coding Tob2 transducer of ERBB2, 2 ENCODES a protein that exhibits nuclear vitamin D receptor binding (ortholog); INVOLVED IN negative regulation of osteoclast differentiation (ortholog); positive regulation of ossification (ortholog); regulation of gene expression (ortholog); ASSOCIATED WITH vitiligo (ortholog) NW_004955413 26999955 27010091 - 102018277 AGCD01014490;GBCB01003439;GBDK01233769;XM_005379348 XP_005379405 MODEL 10286437 pseudo LOC106148294 cyclin-G1 pseudogene NW_004955419 28625064 28637252 - 106148294 AGCD01020470 MODEL 9051670 protein-coding Lypd6 LY6/PLAUR domain containing 6 ENCODES a protein that exhibits acetylcholine receptor inhibitor activity (ortholog); acetylcholine receptor regulator activity (ortholog); INVOLVED IN hippocampal interneuron differentiation (ortholog); nervous system development (ortholog); neuron differentiation (ortholog); FOUND IN cytoplasm (ortholog); membrane (ortholog); neuron projection (ortholog) NW_004955440 15178436 15248791 + 102026356 AGCD01036486;GBDI01055517;XM_005390802;XM_013517504 XP_005390859;XP_013372958 MODEL 8739895 pseudo Gnrh2p gonadotropin releasing hormone 2 pseudogene NW_004955415 13970416 13974147 + 102005135 AGCD01016278;XM_005415280 XP_005415337 MODEL 8701483 protein-coding Neo1 neogenin 1 ENCODES a protein that exhibits BMP receptor binding (ortholog); cadherin binding (ortholog); co-receptor binding (ortholog); INVOLVED IN intracellular iron ion homeostasis (ortholog); multicellular organismal-level iron ion homeostasis (ortholog); myoblast fusion (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Optic Nerve Injuries (ortholog); Penetrating Eye Injuries (ortholog); FOUND IN cell surface (ortholog); glutamatergic synapse (ortholog); growth cone (ortholog) NW_004955450 4191168 4324997 - 102029578 AGCD01042457;AGCD01042458;AGCD01042459;AGCD01042460;GBDF01119486;XM_013518999;XM_013519000;XM_013519001;XM_013519002;XM_013519003 XP_013374453;XP_013374454;XP_013374455;XP_013374456;XP_013374457 MODEL 8963166 pseudo LOC102004747 40S ribosomal protein SA pseudogene NW_004955526 2686932 2687895 - 102004747 AGCD01069310 MODEL 8753575 protein-coding Tmem184b transmembrane protein 184B ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); neuromuscular disease (ortholog) NW_004955413 24506026 24534054 - 102015940 AGCD01014370;GBCB01077690;XM_013511533;XM_013511534;XM_013511535;XM_013511537;XM_013511538 XP_013366987;XP_013366988;XP_013366989;XP_013366991;XP_013366992 MODEL 9046492 ncrna LOC102005088 uncharacterized LOC102005088 NW_004955563 1734092 1737196 - 102005088 AGCD01074160;GBDF01006732;XR_001232369;XR_265018 MODEL 9040476 protein-coding LOC102017173 vomeronasal type-2 receptor 116-like NW_004955563 2059415 2099231 - 102017173 AGCD01074170;AGCD01074171;AGCD01074172;AGCD01074173;AGCD01074174;AGCD01074175;AGCD01074176;AGCD01074177;AGCD01074178;AGCD01074179;XM_013509130 XP_013364584 MODEL 10303076 ncrna LOC106146637 uncharacterized LOC106146637 NW_004955488 7344762 7356039 + 106146637 AGCD01059679;GBCE01079518;XR_001231166 MODEL 10211993 ncrna LOC106148841 uncharacterized LOC106148841 NW_004955430 2122138 2124135 + 106148841 AGCD01029152;GBCQ01172230;XR_001234549;XR_001234550 MODEL 10230970 protein-coding LOC106147476 olfactory receptor 1G1-like NW_004955567 161744 180130 + 106147476 AGCD01074382;AGCD01074383;AGCD01074384;AGCD01074385;GBBH01156591;XM_013509221 XP_013364675 MODEL 10184204 ncrna LOC106147625 uncharacterized LOC106147625 NW_004955599 683907 690127 + 106147625 AGCD01076666;GBDJ01109175;XR_001232562;XR_001232563 MODEL 9012944 protein-coding Hcn4 hyperpolarization activated cyclic nucleotide gated potassium channel 4 ENCODES a protein that exhibits identical protein binding (ortholog); intracellularly cAMP-activated cation channel activity (ortholog); voltage-gated potassium channel activity (ortholog); INVOLVED IN cellular response to aldosterone (ortholog); cellular response to cAMP (ortholog); cellular response to cGMP (ortholog); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH arrhythmogenic right ventricular cardiomyopathy (ortholog); atrial fibrillation (ortholog); Brugada syndrome (ortholog); FOUND IN axon (ortholog); basolateral plasma membrane (ortholog); HCN channel complex (ortholog) NW_004955450 4139852 4181377 + 102025639 AGCD01042455;AGCD01042456;GBDK01339573;XM_005393600 XP_005393657 MODEL 10314265 ncrna LOC106147768 uncharacterized LOC106147768 NW_004955410 4035966 4076697 - 106147768 AGCD01010657;AGCD01010658;AGCD01010659;XR_001232716 MODEL 10310919 ncrna LOC106149771 uncharacterized LOC106149771 NW_004955405 22758880 22771187 + 106149771 AGCD01005104;GBDF01020420;XR_001236141 MODEL 8747515 protein-coding Det1 DET1 partner of COP1 E3 ubiquitin ligase ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin protein ligase binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); protein ubiquitination (ortholog); protein-containing complex assembly (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (ortholog); Cul4A-RING E3 ubiquitin ligase complex (ortholog) NW_004955416 16393199 16408144 + 102008098 AGCD01017354;AGCD01017355;GBCB01056645;XM_005381574;XM_005381575;XM_013512684;XM_013512685 XP_005381631;XP_005381632;XP_013368138;XP_013368139 MODEL 10347559 ncrna LOC106149095 uncharacterized LOC106149095 NW_004955437 21711348 21713485 - 106149095 AGCD01034919;GBDF01117002;XR_001235049 MODEL 8800944 protein-coding Ntsr1 neurotensin receptor 1 ENCODES a protein that exhibits G protein-coupled neurotensin receptor activity (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN adult locomotory behavior (ortholog); associative learning (ortholog); cAMP biosynthetic process (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); autism spectrum disorder (ortholog); COVID-19 (ortholog); FOUND IN axon (ortholog); axon terminus (ortholog); cell surface (ortholog) NW_004955528 1348616 1394798 - 102024502 AGCD01069561;AGCD01069562;GBDF01263293;XM_005410013 XP_005410070 MODEL 10280505 ncrna LOC106150322 uncharacterized LOC106150322 NW_004955471 2855868 2858402 - 106150322 AGCD01053049;GBCB01110176;XR_001237059 MODEL 8992587 protein-coding LOC102016417 charged multivesicular body protein 1b-2 NW_004955529 693587 750753 - 102016417 AGCD01069651;AGCD01069652;AGCD01069653;AGCD01069654;AGCD01069655;AGCD01069656;GBDJ01164486;XM_005410068 XP_005410125 MODEL 8888423 pseudo LOC102024730 60S ribosomal protein L27a pseudogene NW_004955445 6676924 6677366 + 102024730 AGCD01039497 MODEL 8988645 ncrna LOC102023055 uncharacterized LOC102023055 NW_004955426 24038441 24060641 + 102023055 AGCD01026665;GBDF01111157;XR_001234309;XR_261219 MODEL 8757861 protein-coding Tstd3 thiosulfate sulfurtransferase like domain containing 3 ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog) NW_004955411 25392449 25403237 + 102025555 AGCD01012155;GBCE01181628;GBDI01024644;XM_005377810 XP_005377867 MODEL 8835037 protein-coding Efl1 elongation factor like GTPase 1 ENCODES a protein that exhibits GTPase activity (ortholog); ribosome binding (ortholog); INVOLVED IN cytosolic ribosome assembly (ortholog); GTP metabolic process (ortholog); ASSOCIATED WITH colorectal cancer (ortholog); genetic disease (ortholog); high grade glioma (ortholog) NW_004955416 12658177 12789657 - 102028855 AGCD01017212;GBDI01255378;XM_005381460;XM_005381461;XM_013512538 XP_005381517;XP_005381518;XP_013367992 MODEL 8945170 protein-coding Synj2 synaptojanin 2 ENCODES a protein that exhibits inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity (ortholog); inositol-1,4,5-trisphosphate 5-phosphatase activity (ortholog); phosphatidylinositol monophosphate phosphatase activity (ortholog); INVOLVED IN clathrin coat assembly (ortholog); inositol phosphate catabolic process (ortholog); phosphatidylinositol dephosphorylation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Meniere's disease (ortholog); FOUND IN axon terminus (ortholog); cytoplasm (ortholog); cytoplasmic microtubule (ortholog) NW_004955439 4305630 4400775 - 102015243 AGCD01035708;GBCE01021710;GBCQ01037324;XM_005390531;XM_005390532;XM_013517389;XM_013517390;XM_013517391;XM_013517392;XM_013517393 XP_005390588;XP_005390589;XP_013372843;XP_013372844;XP_013372845;XP_013372846;XP_013372847 MODEL 10210341 protein-coding Ctu1 cytosolic thiouridylase subunit 1 ASSOCIATED WITH Animal Disease Models (ortholog); Breast Neoplasms (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN cytosol (ortholog) NW_004955558 959819 960369 - 106147428 AGCD01073408;GBCQ01013477;GBDI01384051;XM_013508884 XP_013364338 MODEL 10328909 ncrna LOC106149362 uncharacterized LOC106149362 NW_004955444 16916566 16933112 + 106149362 AGCD01039193;AGCD01039194;AGCD01039195;GBBH01125437;XR_001235500 MODEL 8797866 ncrna LOC102020155 uncharacterized LOC102020155 NW_004955433 9188880 9223294 + 102020155 AGCD01031610;AGCD01031611;GBDI01212146;XR_261569 MODEL 9052288 pseudo LOC102020891 grpE protein homolog 2, mitochondrial pseudogene NW_004955460 10664409 10665010 - 102020891 AGCD01048600 MODEL 8741120 protein-coding Gc GC vitamin D binding protein ENCODES a protein that exhibits actin binding (ortholog); calcidiol binding (ortholog); vitamin D binding (ortholog); INVOLVED IN female pregnancy (ortholog); lactation (ortholog); response to estradiol (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); Acute Liver Failure (ortholog); adult respiratory distress syndrome (ortholog); FOUND IN axon (ortholog); extracellular region (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955447 1361698 1400633 + 102020622 AGCD01040519;GBDI01295719;XM_005392770;XR_262404 XP_005392827 MODEL 10080960 pseudo LOC106147360 40S ribosomal protein SA-like NW_004955547 529959 530897 - 106147360 AGCD01072162 MODEL 8866008 pseudo LOC102022327 60S ribosomal protein L32 pseudogene NW_004955437 21682919 21683367 + 102022327 AGCD01034919 MODEL 8773035 ncrna LOC102008038 uncharacterized LOC102008038 NW_004955445 9004503 9006160 - 102008038 AGCD01039621;GBBH01065534;XR_262322 MODEL 10216550 ncrna LOC106146803 uncharacterized LOC106146803 NW_004955407 40990435 40996436 - 106146803 AGCD01007854;GBBH01011193;XR_001231382;XR_001231383 MODEL 39132435 snrna U6 U6 spliceosomal RNA 8983630 protein-coding LOC102004045 protocadherin Fat 2 NW_004955410 4266352 4360690 + 102004045 AGCD01010661;AGCD01010662;AGCD01010663;AGCD01010664;AGCD01010665;AGCD01010666;GBBH01166136;XM_005377194;XM_005377195;XM_005377196 XP_005377251;XP_005377252;XP_005377253 MODEL 10333431 ncrna LOC106149772 uncharacterized LOC106149772 NW_004955405 38156280 38165113 + 106149772 AGCD01005470;XR_001236143 MODEL 8830147 protein-coding LOC102021985 GSK-3-binding protein FRAT2 NW_004955422 2871445 2965411 - 102021985 AGCD01022495;AGCD01022496;GBDI01224871;XM_013514199 XP_013369653 MODEL 10164915 ncrna LOC106149096 uncharacterized LOC106149096 NW_004955437 489899 491615 - 106149096 AGCD01034137;GBDI01027430;XR_001235050 MODEL 8957034 ncrna LOC102029605 uncharacterized LOC102029605 NW_004955467 6410397 6413533 + 102029605 AGCD01051413;GBCQ01099690;XR_263340 MODEL 8725546 protein-coding LOC102013444 vomeronasal type-2 receptor 116-like NW_004955524 3567737 3596413 + 102013444 AGCD01068907;AGCD01068908;AGCD01068909;AGCD01068910;AGCD01068911;AGCD01068912;AGCD01068913;GBDF01116192;XM_005409711 XP_005409768 MODEL 8804150 protein-coding Nphp1 nephrocystin 1 INVOLVED IN intracellular protein localization (ortholog); photoreceptor cell outer segment organization (ortholog); positive regulation of bicellular tight junction assembly (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 1 (ortholog); congenital anomalies of kidney and urinary tract (ortholog); FOUND IN cell-cell junction (ortholog); ciliary base (ortholog); ciliary transition zone (ortholog) NW_004955470 3261455 3305989 + 102008524 AGCD01052695;AGCD01052696;AGCD01052697;GBCE01024891;XM_005400633;XM_005400634;XM_013522831 XP_005400690;XP_005400691;XP_013378285 MODEL 9018271 protein-coding Il12b interleukin 12B ENCODES a protein that exhibits cytokine activity (ortholog); cytokine receptor binding (ortholog); growth factor activity (ortholog); INVOLVED IN cell migration (ortholog); cell population proliferation (ortholog); cell surface receptor signaling pathway (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-23 signaling pathway; interleukin-27 signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); ankylosing spondylitis (ortholog); anogenital venereal wart (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955408 13302506 13316300 - 102021422 AGCD01008352;GBBH01220378;XM_005376251 XP_005376308 MODEL 9010386 protein-coding Capn5 calpain 5 INVOLVED IN granulosa cell differentiation (ortholog); luteinization (ortholog); ovarian follicle development (ortholog); ASSOCIATED WITH cone-rod dystrophy (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN cell surface (ortholog); synapse (ortholog) NW_004955414 14652578 14706833 - 102011859 AGCD01015155;GBCE01186015;XM_005379843;XM_005379844;XM_005379845 XP_005379900;XP_005379901;XP_005379902 MODEL 10084150 ncrna LOC106148431 uncharacterized LOC106148431 NW_004955421 4677059 4701237 - 106148431 AGCD01021697;AGCD01021698;AGCD01021699;GBCE01015254;XR_001233860;XR_001233861 MODEL 8899837 pseudo LOC102005092 golgin subfamily A member 5 pseudogene NW_004955594 631055 633335 - 102005092 AGCD01076436 MODEL 8747723 ncrna LOC102016769 uncharacterized LOC102016769 NW_004955596 714266 732336 - 102016769 AGCD01076528;AGCD01076529;AGCD01076530;AGCD01076531;GBCE01143550;XR_001232546 MODEL 8832471 pseudo LOC102017177 protein slowmo homolog 2 pseudogene NW_004955447 18086601 18087624 + 102017177 AGCD01041153 MODEL 8992097 protein-coding Rpl35a ribosomal protein L35a ENCODES a protein that exhibits ribonucleoprotein complex binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN cytoplasmic translation (ortholog); ribosomal large subunit biogenesis (ortholog); rRNA processing (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Diamond-Blackfan anemia 5 (ortholog); glioblastoma (ortholog); FOUND IN cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog) NW_004955420 11957070 11960713 - 102026983 AGCD01020848;GBCQ01001912;XM_005383082;XM_005383083 XP_005383139;XP_005383140 MODEL 10203508 ncrna LOC106146638 uncharacterized LOC106146638 NW_004955488 7869732 7873410 - 106146638 AGCD01059696;XR_001231167 MODEL 8708122 protein-coding Efna1 ephrin A1 ENCODES a protein that exhibits ephrin receptor binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN aortic valve morphogenesis (ortholog); endocardial cushion to mesenchymal transition involved in heart valve formation (ortholog); ephrin receptor signaling pathway (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; hypoxia inducible factor pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN extracellular region (ortholog); focal adhesion (ortholog); plasma membrane (ortholog) NW_004955545 1610929 1617217 + 102025845 AGCD01071863;GBBH01228706;XM_005411571 XP_005411628 MODEL 39131837 snrna U1 U1 spliceosomal RNA 8708669 ncrna LOC102020158 uncharacterized LOC102020158 NW_004955527 937906 940168 + 102020158 AGCD01069387;GBDF01019742;XR_264665 MODEL 39131406 protein-coding YTHDF2 YTH N6-methyladenosine RNA binding protein 2 10097044 ncrna LOC106147626 uncharacterized LOC106147626 NW_004955600 519912 541771 + 106147626 AGCD01076729;AGCD01076730;AGCD01076731;AGCD01076732;AGCD01076733;GBDF01194021;XR_001232564 MODEL 10325218 pseudo LOC106150177 60S ribosomal protein L21-like NW_004955467 658882 659365 + 106150177 AGCD01051230 MODEL 39133776 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 8895758 protein-coding Hcrt hypocretin neuropeptide precursor ENCODES a protein that exhibits neuropeptide activity (ortholog); neuropeptide hormone activity (ortholog); type 1 orexin receptor binding (ortholog); INVOLVED IN behavioral response to ethanol (ortholog); drinking behavior (ortholog); eating behavior (ortholog); PARTICIPATES IN orexin/hypocretin signaling pathway; orexin/hypocretin signaling pathway via orexin/hypocretin receptor 1; orexin/hypocretin signaling pathway via orexin/hypocretin receptor 2; ASSOCIATED WITH alcohol use disorder (ortholog); cannabis dependence (ortholog); cocaine abuse (ortholog); FOUND IN cytoplasmic vesicle (ortholog); neuronal dense core vesicle lumen (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955451 16235819 16237457 - 102015590 AGCD01043662;XM_005394450 XP_005394507 MODEL 8956659 protein-coding Lrrc46 leucine rich repeat containing 46 INVOLVED IN axoneme assembly (ortholog); maintenance of cell number (ortholog); single fertilization (ortholog); ASSOCIATED WITH Ovarian Neoplasms (ortholog); FOUND IN sperm flagellum (ortholog); sperm midpiece (ortholog) NW_004955451 13276878 13281868 - 102014407 AGCD01043464;GBDF01007360;XM_005394266 XP_005394323 MODEL 10206403 ncrna LOC106148295 uncharacterized LOC106148295 NW_004955403 31363585 31373626 - 106148295 AGCD01002416;XR_001233595 MODEL 8983288 protein-coding Gns glucosamine (N-acetyl)-6-sulfatase ENCODES a protein that exhibits glycosaminoglycan binding (ortholog); N-acetylglucosamine-6-sulfatase activity (ortholog); sulfate binding (ortholog); INVOLVED IN heparan sulfate proteoglycan catabolic process (ortholog); keratan sulfate proteoglycan catabolic process (ortholog); ASSOCIATED WITH genetic disease (ortholog); mucopolysaccharidosis III (ortholog); mucopolysaccharidosis type IIID (ortholog); FOUND IN azurophil granule (ortholog); lysosome (ortholog) NW_004955458 11471376 11500793 - 102022365 AGCD01047751;GBBH01034306;GBDI01070476;XM_005397447 XP_005397504 MODEL 39132438 snrna U6 U6 spliceosomal RNA 8798168 ncrna LOC102004751 uncharacterized LOC102004751 NW_004955437 17871916 17891241 + 102004751 AGCD01034762;GBCQ01090089;XR_001235033;XR_001235034;XR_001235035;XR_261887;XR_261889 MODEL 8972903 protein-coding Ttbk1 tau tubulin kinase 1 ENCODES a protein that exhibits protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); protein tyrosine kinase activity (ortholog); INVOLVED IN learning or memory (ortholog); negative regulation of gene expression (ortholog); positive regulation of astrocyte activation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Childhood Schizophrenia (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); microtubule associated complex (ortholog) NW_004955437 9161880 9195098 + 102005176 AGCD01034521;AGCD01034522;GBDF01162981;XM_005389756;XM_005389758;XM_013517133;XM_013517134;XM_013517135;XM_013517136 XP_005389813;XP_005389815;XP_013372587;XP_013372588;XP_013372589;XP_013372590 MODEL 8958003 pseudo LOC102013043 60S ribosomal protein L29 pseudogene NW_004955404 82336 85302 + 102013043 AGCD01003194 MODEL 8731168 protein-coding LOC102022676 rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1 NW_004955408 21612072 21613637 + 102022676 AGCD01008555;AGCD01008556;GBDF01123451;XM_013507629 XP_013363083 MODEL 8956603 ncrna LOC102013451 uncharacterized LOC102013451 NW_004955547 654544 658859 - 102013451 AGCD01072171;GBDK01382015;XR_001232230;XR_264899 MODEL 10200099 ncrna LOC106149508 uncharacterized LOC106149508 NW_004955447 18694522 18697930 + 106149508 AGCD01041184;GBBH01211415;XR_001235749 MODEL 8893140 pseudo LOC102016777 MICOS complex subunit MIC27-like NW_004955454 6941335 6942263 + 102016777 AGCD01045274 MODEL 10228615 ncrna LOC106147769 uncharacterized LOC106147769 NW_004955410 26969115 26978532 + 106147769 AGCD01011206;GBDI01152396;XR_001232720 MODEL 10063772 protein-coding LOC106147361 translation initiation factor IF-2-like NW_004955547 562109 564352 + 106147361 AGCD01072163;XM_013508441 XP_013363895 MODEL 8869995 protein-coding Deup1 deuterosome assembly protein 1 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN de novo centriole assembly involved in multi-ciliated epithelial cell differentiation (ortholog); multi-ciliated epithelial cell differentiation (ortholog); ASSOCIATED WITH glioblastoma (ortholog); lung non-small cell carcinoma (ortholog); polycystic kidney disease (ortholog); FOUND IN deuterosome (ortholog) NW_004955414 1062968 1126698 - 102025452 AGCD01014757;GBBH01011302;GBCE01162883;XM_005379707;XM_013512047;XM_013512048;XM_013512049;XM_013512050;XM_013512051;XM_013512052 XP_005379764;XP_013367501;XP_013367502;XP_013367503;XP_013367504;XP_013367505;XP_013367506 MODEL 8703196 protein-coding Lypd6b LY6/PLAUR domain containing 6B ENCODES a protein that exhibits acetylcholine receptor regulator activity (ortholog) NW_004955440 14865736 15028655 + 102018030 AGCD01036481;AGCD01036482;AGCD01036483;AGCD01036484;GBBH01114673;XM_013517509 XP_013372963 MODEL 10124260 ncrna LOC106146804 uncharacterized LOC106146804 NW_004955495 3176366 3182931 - 106146804 AGCD01061833;GBCE01017686;XR_001231381 MODEL 8990513 protein-coding Ctu2 cytosolic thiouridylase subunit 2 ASSOCIATED WITH Animal Disease Models (ortholog); Breast Neoplasms (ortholog); congenital anomalies of kidney and urinary tract (ortholog); FOUND IN cytosol (ortholog); protein-containing complex (ortholog) NW_004955541 2610021 2618197 + 102026798 AGCD01071418;AGCD01071419;GBBH01185371;XM_013507940 XP_013363394 MODEL 8908308 protein-coding Nes nestin ENCODES a protein that exhibits CCR5 chemokine receptor binding (ortholog); INVOLVED IN G2/M transition of mitotic cell cycle (ortholog); negative regulation of catalytic activity (ortholog); negative regulation of neuron apoptotic process (ortholog); ASSOCIATED WITH acute kidney failure (ortholog); brain infarction (ortholog); brain ischemia (ortholog); FOUND IN cytoplasm (ortholog); intermediate filament (ortholog); intermediate filament cytoskeleton (ortholog) NW_004955545 2748132 2756595 - 102006826 AGCD01071921;GBDK01240958;XM_005411693 XP_005411750 MODEL 39133683 mirna MIR767 microRNA 767 10167180 ncrna LOC106149634 uncharacterized LOC106149634 NW_004955451 12280024 12285542 + 106149634 AGCD01043384;GBBH01198787;XR_001235946 MODEL 10136545 protein-coding LOC106148842 ral guanine nucleotide dissociation stimulator-like NW_004955430 7925459 7926100 + 106148842 AGCD01029377;GBDK01406667;XM_013515595 XP_013371049 MODEL 8978832 protein-coding Synj2bp synaptojanin 2 binding protein ENCODES a protein that exhibits type II activin receptor binding (ortholog); INVOLVED IN intracellular distribution of mitochondria (ortholog); negative regulation of activin receptor signaling pathway (ortholog); negative regulation of angiogenesis (ortholog); FOUND IN cell surface (ortholog); mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955466 80766 127383 + 102022798 AGCD01050649;AGCD01050650;GBDF01187942;XM_005399019 XP_005399076 MODEL 8831366 protein-coding Hcrtr1 hypocretin receptor 1 ENCODES a protein that exhibits orexin receptor activity (ortholog); peptide hormone binding (ortholog); INVOLVED IN feeding behavior (ortholog); G protein-coupled receptor signaling pathway (ortholog); neuropeptide signaling pathway (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphaq family; orexin/hypocretin signaling pathway; orexin/hypocretin signaling pathway via orexin/hypocretin receptor 1; ASSOCIATED WITH Cocaine-Related Disorders (ortholog); withdrawal disorder (ortholog); FOUND IN plasma membrane (ortholog) NW_004955452 10026464 10036267 + 102010663 AGCD01044267;XM_005395029;XM_005395030;XM_013519463 XP_005395086;XP_005395087;XP_013374917 MODEL 8874962 protein-coding LOC102020892 uncharacterized LOC102020892 NW_004955461 9951120 9952974 - 102020892 AGCD01048952;GBDF01046379;XM_005398045 XP_005398102 MODEL 8863825 protein-coding LOC102004761 eukaryotic translation initiation factor 1A, X-chromosomal-like NW_004955446 18926932 18928944 - 102004761 AGCD01040418;GBBH01096072;XM_013518447 XP_013373901 MODEL 8765834 protein-coding Gca grancalcin ENCODES a protein that exhibits calcium ion binding (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog) NW_004955449 11503201 11538809 - 102017289 AGCD01042091;GBBH01101864;XM_013518747;XM_013518748;XM_013518749;XM_013518750 XP_013374201;XP_013374202;XP_013374203;XP_013374204 MODEL 8861623 ncrna LOC102016419 uncharacterized LOC102016419 NW_004955534 1133388 1134648 - 102016419 AGCD01070487;GBDF01212577;XR_264761 MODEL 8841786 protein-coding Rpl36 ribosomal protein L36 ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH myoepithelioma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog) NW_004955495 3729626 3731043 - 102024695 AGCD01061879;GBBH01002072;XM_005405761 XP_005405818 MODEL 8890888 protein-coding LOC102022332 uncharacterized LOC102022332 NW_004955442 5825456 5861268 - 102022332 AGCD01037570;AGCD01037571;GBBH01202596;XM_005391147;XM_013517640 XP_005391204;XP_013373094 MODEL 10164058 protein-coding Gpr62 G protein-coupled receptor 62 ENCODES a protein that exhibits arrestin family protein binding (ortholog); identical protein binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); ligand-independent adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); positive regulation of calcium-mediated signaling (ortholog); FOUND IN endosome (ortholog); endosome membrane (ortholog); plasma membrane (ortholog) NW_004955532 3602642 3603230 + 106147238 AGCD01070288;GBCB01089709;XM_013507618 XP_013363072 MODEL 10242455 protein-coding LOC106150179 putative 60S ribosomal protein L39-like 5 NW_004955467 9557154 9557570 - 106150179 AGCD01051517;XM_013522038 XP_013377492 MODEL 8794342 protein-coding Ythdf3 YTH N6-methyladenosine RNA binding protein F3 ENCODES a protein that exhibits N6-methyladenosine-containing RNA reader activity (ortholog); ribosome binding (ortholog); RNA binding (ortholog); INVOLVED IN mRNA destabilization (ortholog); negative regulation of type I interferon-mediated signaling pathway (ortholog); positive regulation of translation (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic stress granule (ortholog); P-body (ortholog) NW_004955444 15758596 15789979 - 102023642 AGCD01039150;GBCC01008759;XM_005392168;XM_005392169;XM_013518190 XP_005392225;XP_005392226;XP_013373644 MODEL 10160309 ncrna LOC106149363 uncharacterized LOC106149363 NW_004955405 25652175 25692135 + 106149363 AGCD01005177;AGCD01005178;AGCD01005179;XR_001235501 MODEL 8907634 protein-coding Tmem184c transmembrane protein 184C NW_004955428 3191833 3212267 + 102012109 AGCD01027650;GBCQ01034842;XM_005386668 XP_005386725 MODEL 10225399 protein-coding LOC106149097 uncharacterized LOC106149097 NW_004955404 1245620 1248276 + 106149097 AGCD01003220;GBDF01077184;XM_013516786 XP_013372240 MODEL 8871913 protein-coding LOC102029606 olfactory receptor 8B8-like NW_004955412 25301304 25302938 + 102029606 AGCD01013143;XM_005378652 XP_005378709 MODEL 10134223 protein-coding LOC106147477 olfactory receptor 10Q1-like NW_004955567 224383 226341 - 106147477 AGCD01074388;AGCD01074389;XM_013509222 XP_013364676 MODEL 9013157 protein-coding Dexi Dexi homolog NW_004955442 7585954 7599413 + 102005514 AGCD01037625;GBDF01049155;XM_005391177;XM_005391178;XM_013518003 XP_005391234;XP_005391235;XP_013373457 MODEL 39132440 snrna U6 U6 spliceosomal RNA 10307324 ncrna LOC106148432 uncharacterized LOC106148432 NW_004955421 29977 53724 - 106148432 AGCD01021542;GBDF01146987;XR_001233866 MODEL 9031653 protein-coding LOC102005097 beta-defensin 8-like NW_004955403 53669665 53672863 + 102005097 AGCD01003067;GBDK01012916;XM_005373835 XP_005373892 MODEL 10253491 ncrna LOC106150323 uncharacterized LOC106150323 NW_004955472 1421389 1431550 - 106150323 AGCD01053390;XR_001237064 MODEL 9037821 protein-coding Ntsr2 neurotensin receptor 2 ENCODES a protein that exhibits G protein-coupled neurotensin receptor activity (ortholog); identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN exploration behavior (ortholog); phospholipase C-activating G protein-coupled receptor signaling pathway (ortholog); positive regulation of ERK1 and ERK2 cascade (ortholog); ASSOCIATED WITH Binge Drinking (ortholog); FOUND IN cell surface (ortholog); dendritic shaft (ortholog); membrane (ortholog) NW_004955487 6121277 6136030 - 102019815 AGCD01059355;AGCD01059356;AGCD01059357;AGCD01059358;XM_013504337 XP_013359791 MODEL 10307983 protein-coding LOC106148843 uncharacterized protein C10orf95-like NW_004955404 787471 788239 + 106148843 AGCD01003211;GBBH01158679;XM_013515610 XP_013371064 MODEL 9019886 protein-coding Rnf148 ring finger protein 148 NW_004955479 4322099 4323349 - 102011115 AGCD01056320;GBDF01050598;XM_005402321 XP_005402378 MODEL 8746622 ncrna LOC102024735 uncharacterized LOC102024735 NW_004955447 14382532 14388650 - 102024735 AGCD01041003;GBDF01149302;XR_001235731;XR_001235732;XR_001235733;XR_001235734;XR_001235735;XR_001235736;XR_001235737;XR_001235738 MODEL 8921014 protein-coding Golga1 golgin A1 ENCODES a protein that exhibits molecular carrier activity (ortholog); INVOLVED IN transepithelial transport (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); perinuclear region of cytoplasm (ortholog) NW_004955419 3300351 3360495 + 102018188 AGCD01019717;AGCD01019718;AGCD01019719;GBCQ01030895;XM_005382475;XM_005382476;XM_013513149;XM_013513150;XM_013513151;XR_001233577;XR_260603 XP_005382532;XP_005382533;XP_013368603;XP_013368604;XP_013368605 MODEL 39131843 snrna U1 U1 spliceosomal RNA 8881560 ncrna LOC102023059 uncharacterized LOC102023059 NW_004955429 15249622 15251278 + 102023059 AGCD01028799;XR_261334 MODEL 8988137 pseudo LOC102004058 olfactory receptor 51I1-like NW_004955414 21304994 21305922 + 102004058 AGCD01015412 MODEL 8799804 protein-coding Efna2 ephrin A2 ENCODES a protein that exhibits ephrin receptor binding (ortholog); INVOLVED IN axon guidance (ortholog); bone remodeling (ortholog); ephrin receptor signaling pathway (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; FOUND IN neuromuscular junction (ortholog); perikaryon (ortholog) NW_004955495 6614828 6627287 - 102007446 AGCD01062085;GBBH01085949;XM_013505059 XP_013360513 MODEL 8879930 pseudo LOC102021986 high mobility group protein B1 pseudogene NW_004955491 7562214 7570310 + 102021986 AGCD01060601 MODEL 39133777 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 10391206 ncrna LOC106147770 uncharacterized LOC106147770 NW_004955410 23600961 23604410 - 106147770 AGCD01011109;GBDF01147045;XR_001232721 MODEL 10366258 ncrna LOC106149773 uncharacterized LOC106149773 NW_004955453 1599175 1601569 - 106149773 AGCD01044616;GBCE01130720;XR_001236142 MODEL 8753141 protein-coding Lrrc47 leucine rich repeat containing 47 NW_004955486 7880259 7890709 + 102023479 AGCD01059139;GBDI01127111;XM_005404136;XM_005404137 XP_005404193;XP_005404194 MODEL 10319773 protein-coding LOC106148296 uncharacterized LOC106148296 NW_004955403 31462598 31465395 + 106148296 AGCD01002418;GBCE01157276;GBDK01179107;XM_013513186 XP_013368640 MODEL 8991108 protein-coding Nphp3 nephrocystin 3 INVOLVED IN atrial septum development (ortholog); cilium assembly (ortholog); convergent extension involved in gastrulation (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); autosomal dominant polycystic kidney disease (ortholog); autosomal recessive polycystic kidney disease (ortholog); FOUND IN ciliary base (ortholog); ciliary inversin compartment (ortholog); ciliary tip (ortholog) NW_004955501 5799879 5837022 + 102019824 AGCD01064169;AGCD01064170;GBCE01105000;GBCE01105007;XM_013505800 XP_013361254 MODEL 8897035 protein-coding Capn6 calpain 6 ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN microtubule bundle formation (ortholog); regulation of cytoskeleton organization (ortholog); ASSOCIATED WITH hypertension (ortholog); prostate cancer (ortholog); FOUND IN microtubule (ortholog); perinuclear region of cytoplasm (ortholog); spindle microtubule (ortholog) NW_004955490 4499888 4526060 + 102005385 AGCD01060188;GBDF01112329;XM_005404646 XP_005404703 MODEL 151707887 mirna MIR770 microRNA 770 8740018 ncrna LOC102013044 uncharacterized LOC102013044 NW_004955452 10168123 10182403 + 102013044 AGCD01044270;XR_262673 MODEL 8953982 ncrna LOC102022682 uncharacterized LOC102022682 NW_004955411 25085395 25090288 + 102022682 AGCD01012149;GBDK01264939;XR_001232798;XR_259942 MODEL 8838901 pseudo LOC102008040 very-long-chain 3-oxoacyl-CoA reductase pseudogene NW_004955572 223774 282157 + 102008040 AGCD01074901;AGCD01074902;AGCD01074903;AGCD01074904;AGCD01074905;AGCD01074906 MODEL 10378479 ncrna LOC106149509 uncharacterized LOC106149509 NW_004955447 13770691 13783949 - 106149509 AGCD01040973;GBDF01221343;XR_001235750;XR_001235751;XR_001235752 MODEL 10208762 ncrna LOC106148433 uncharacterized LOC106148433 NW_004955421 4566806 4585843 - 106148433 AGCD01021696;GBDF01251694;XR_001233867 MODEL 8724834 ncrna LOC102016779 uncharacterized LOC102016779 NW_004955455 4292626 4309360 - 102016779 AGCD01045673;GBDF01074795;XR_262828 MODEL 10132183 ncrna LOC106148844 uncharacterized LOC106148844 NW_004955404 790715 809976 - 106148844 AGCD01003211;XR_001234552 MODEL 8988403 protein-coding LOC102016421 uncharacterized LOC102016421 NW_004955538 2155703 2159116 - 102016421 AGCD01071102;GBDF01120673;XM_013507821 XP_013363275 MODEL 8908379 protein-coding Gcat glycine C-acetyltransferase PARTICIPATES IN dihydropyrimidine dehydrogenase deficiency pathway; dimethylglycine dehydrogenase deficiency pathway; nonketotic hyperglycinemia pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN mitochondrion (ortholog); nuclear speck (ortholog); nucleoplasm (ortholog) NW_004955413 24184997 24192178 + 102011102 AGCD01014355;GBDJ01317225;XM_005379228 XP_005379285 MODEL 39131717 snrna U1 U1 spliceosomal RNA 8848182 protein-coding Il12rb1 interleukin 12 receptor subunit beta 1 ENCODES a protein that exhibits coreceptor activity (ortholog); cytokine binding (ortholog); interleukin-12 receptor activity (ortholog); INVOLVED IN cellular response to type II interferon (ortholog); interleukin-12-mediated signaling pathway (ortholog); interleukin-23-mediated signaling pathway (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-23 signaling pathway; interleukin-27 signaling pathway; ASSOCIATED WITH allergic rhinitis (ortholog); asthma (ortholog); brain ischemia (ortholog); FOUND IN external side of plasma membrane (ortholog); interleukin-12 receptor complex (ortholog); interleukin-23 receptor complex (ortholog) NW_004955524 3276932 3299617 + 102011474 AGCD01068876;AGCD01068877;AGCD01068878;AGCD01068879;GBBH01019037;GBDF01252409;XM_013507268 XP_013362722 MODEL 9068046 protein-coding Lypd8 LY6/PLAUR domain containing 8 INVOLVED IN defense response to Gram-negative bacterium (ortholog); FOUND IN extracellular region (ortholog) NW_004955418 29811424 29818756 - 102008415 AGCD01019484;AGCD01019485;XM_005382360 XP_005382417 MODEL 8817818 protein-coding LOC102004059 olfactory receptor 2D3-like NW_004955414 22615797 22616720 - 102004059 AGCD01015466;XM_005380178 XP_005380235 MODEL 10308967 ncrna LOC106149635 uncharacterized LOC106149635 NW_004955451 12429557 12434806 + 106149635 AGCD01043394;AGCD01043395;AGCD01043396;GBDF01277347;XR_001235947 MODEL 10146764 ncrna LOC106149098 uncharacterized LOC106149098 NW_004955437 5665413 5667339 + 106149098 AGCD01034396;GBDJ01037219;XR_001235055 MODEL 8845926 protein-coding Net1 neuroepithelial cell transforming 1 ENCODES a protein that exhibits small GTPase binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); cellular response to ionizing radiation (ortholog); myoblast migration (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Ependymomas (ortholog); long QT syndrome (ortholog); FOUND IN nucleus (ortholog); plasma membrane (ortholog) NW_004955421 22105292 22154368 + 102022393 AGCD01022127;GBDF01192140;XM_005383837;XM_005383838 XP_005383894;XP_005383895 MODEL 9033992 ncrna LOC102017181 uncharacterized LOC102017181 NW_004955402 45288759 45321351 + 102017181 AGCD01001133;AGCD01001134;AGCD01001135;GBDF01081512;XR_001237047;XR_259087;XR_259088 MODEL 8854013 protein-coding Ttbk2 tau tubulin kinase 2 ENCODES a protein that exhibits kinesin binding (ortholog); protein serine kinase activity (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN cerebellar granular layer development (ortholog); cerebellar granule cell precursor tangential migration (ortholog); cerebellum development (ortholog); ASSOCIATED WITH autosomal dominant cerebellar ataxia (ortholog); genetic disease (ortholog); spastic ataxia (ortholog); FOUND IN centriole (ortholog); ciliary basal body (ortholog); ciliary base (ortholog) NW_004955416 9412297 9518561 - 102026216 AGCD01017087;AGCD01017088;GBBH01036629;GBCE01141570;XM_013512442 XP_013367896 MODEL 8904989 protein-coding Hcrtr2 hypocretin receptor 2 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); orexin receptor activity (ortholog); peptide hormone binding (ortholog); INVOLVED IN feeding behavior (ortholog); G protein-coupled receptor signaling pathway (ortholog); glucose homeostasis (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphai family; G protein mediated signaling pathway via Galphaq family; orexin/hypocretin signaling pathway; ASSOCIATED WITH hyperglycemia (ortholog); narcolepsy (ortholog); FOUND IN plasma membrane (ortholog) NW_004955411 970892 1010138 - 102008075 AGCD01011469;AGCD01011470;AGCD01011471;GBDF01277185;GBDF01277186;XM_013510721 XP_013366175 MODEL 10109494 protein-coding LOC106147627 zinc finger protein 449-like NW_004955602 438994 439904 - 106147627 AGCD01076785;GBDF01188282;GBDF01188283;XM_013510078 XP_013365532 MODEL 8790647 pseudo LOC102013453 gamma-aminobutyric acid receptor-associated protein pseudogene NW_004955442 14455390 14458901 - 102013453 AGCD01037821 MODEL 8848688 protein-coding LOC102029612 olfactory receptor 6N1-like NW_004955468 10732482 10733429 - 102029612 AGCD01052099;XM_013522299 XP_013377753 MODEL 9011354 protein-coding LOC102020901 killer cell lectin-like receptor 6 NW_004955413 7305360 7314993 + 102020901 AGCD01013812;AGCD01013813;XM_005379619 XP_005379676 MODEL 8834003 protein-coding LOC102020160 disintegrin and metalloproteinase domain-containing protein 32-like NW_004955536 3191220 3334848 - 102020160 AGCD01070812;AGCD01070813;AGCD01070814;AGCD01070815;AGCD01070816;AGCD01070817;GBDF01006513;XM_013507728 XP_013363182 MODEL 10222055 ncrna LOC106150324 uncharacterized LOC106150324 NW_004955472 8050630 8054790 + 106150324 AGCD01053637;GBBH01048292;XR_001237065 MODEL 10252601 protein-coding LOC106147362 translation initiation factor IF-2-like NW_004955547 564087 567929 + 106147362 AGCD01072163;AGCD01072164;GBCQ01047831;GBDK01282685;XM_013508442 XP_013363896 MODEL 8721816 protein-coding LOC102013050 homeobox protein Hox-A4-like NW_004955407 36080940 36082388 - 102013050 AGCD01007755;GBCQ01047171;XM_013504651 XP_013360105 MODEL 8908797 protein-coding Nuak1 NUAK family kinase 1 ENCODES a protein that exhibits p53 binding (ortholog); protein serine/threonine kinase activity (ortholog); INVOLVED IN protein phosphorylation (ortholog); regulation of cell adhesion (ortholog); regulation of cellular senescence (ortholog); ASSOCIATED WITH COVID-19 (ortholog); multiple myeloma (ortholog); Neoplasm Invasiveness (ortholog); FOUND IN cytoplasm (ortholog); fibrillar center (ortholog); nucleoplasm (ortholog) NW_004955405 40156316 40188144 - 102003938 AGCD01005505;GBCE01016816;GBDF01040523;XM_013519022 XP_013374476 MODEL 8876120 protein-coding Rnf149 ring finger protein 149 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN cellular response to xenobiotic stimulus (ortholog); negative regulation of MAPK cascade (ortholog); regulation of protein stability (ortholog) NW_004955470 7051552 7074187 - 102029172 AGCD01052790;AGCD01052791;GBBH01172773;GBDF01008173;XM_013522794 XP_013378248 MODEL 8808660 protein-coding Rpl36a ribosomal protein L36a ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog) NW_004955503 7520530 7523593 + 102026551 AGCD01064794;AGCD01064795;GBBH01002041;GBDI01009649;XM_013505856 XP_013361310 MODEL 8959533 protein-coding LOC102023060 olfactory receptor 4A47-like NW_004955511 92806 93715 - 102023060 AGCD01066319;XM_013506408 XP_013361862 MODEL 8995112 protein-coding Gpr63 G protein-coupled receptor 63 FOUND IN signaling receptor complex (ortholog) NW_004955411 22771570 22817906 - 102019152 AGCD01012097;GBCQ01010247;XM_005377788;XM_013510888 XP_005377845;XP_013366342 MODEL 8830038 protein-coding Ctxn1 cortexin 1 NW_004955563 1343212 1344056 + 102018444 AGCD01074142;GBBH01001939;GBCB01089641;XM_005413139 XP_005413196 MODEL 9049951 protein-coding Synm synemin ENCODES a protein that exhibits intermediate filament binding (ortholog); structural constituent of cytoskeleton (ortholog); structural constituent of muscle (ortholog); INVOLVED IN fast-twitch skeletal muscle fiber contraction (ortholog); FOUND IN costamere (ortholog); intermediate filament (ortholog); intermediate filament cytoskeleton (ortholog) NW_004955416 26554074 26579804 + 102018727 AGCD01017598;AGCD01017599;GBCE01037253;XM_013512539 XP_013367993 MODEL 8824295 protein-coding Dffa DNA fragmentation factor subunit alpha ENCODES a protein that exhibits deoxyribonuclease inhibitor activity (ortholog); INVOLVED IN negative regulation of apoptotic DNA fragmentation (ortholog); negative regulation of execution phase of apoptosis (ortholog); positive regulation of apoptotic process (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955486 3273712 3274510 + 102020676 AGCD01059020;XM_013504141 XP_013359595 MODEL 39131601 snrna U1 U1 spliceosomal RNA 39132441 snrna U6 U6 spliceosomal RNA 8766177 pseudo LOC102004762 ADP-ribosylation factor-like protein 5A pseudogene NW_004955574 1088556 1089812 - 102004762 AGCD01075153 MODEL 39131542 protein-coding HCST hematopoietic cell signal transducer 10144591 ncrna LOC106146805 uncharacterized LOC106146805 NW_004955407 40999505 41006004 + 106146805 AGCD01007854;GBBH01054480;XR_001231384;XR_001231385;XR_001231386 MODEL 10141146 pseudo LOC106150180 NGFI-A-binding protein 1 pseudogene NW_004955467 10571393 10573278 - 106150180 AGCD01051577 MODEL 10140576 ncrna LOC106149510 uncharacterized LOC106149510 NW_004955447 18276019 18277925 - 106149510 AGCD01041164;GBDF01308310;XR_001235753 MODEL 39133778 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 10276409 protein-coding LOC106149364 uncharacterized LOC106149364 NW_004955444 13345314 13348836 + 106149364 AGCD01039099;GBDI01057705;XM_013518149 XP_013373603 MODEL 10083636 ncrna LOC106147771 uncharacterized LOC106147771 NW_004955410 4991453 4994838 + 106147771 AGCD01010674;XR_001232722 MODEL 10092733 ncrna LOC106147363 uncharacterized LOC106147363 NW_004955547 1303216 1305339 - 106147363 AGCD01072208;GBDK01171259;XR_001232215 MODEL 10346095 ncrna LOC106149774 uncharacterized LOC106149774 NW_004955453 11579705 11623191 + 106149774 AGCD01044812;XR_001236144 MODEL 8730871 ncrna LOC102013053 uncharacterized LOC102013053 NW_004955456 10144425 10145561 + 102013053 AGCD01046518;GBDF01025520;XR_262893 MODEL 10393513 ncrna LOC106148297 uncharacterized LOC106148297 NW_004955419 1236831 1242731 + 106148297 AGCD01019646;GBCQ01026192;XR_001233596 MODEL 8770778 protein-coding Tmem185a transmembrane protein 185A FOUND IN dendrite (ortholog) NW_004955498 5669397 5703989 + 102028212 AGCD01063089;AGCD01063090;GBDK01192874;XM_005406414;XM_013505547 XP_005406471;XP_013361001 MODEL 9011773 protein-coding Rnf150 ring finger protein 150 NW_004955471 2026779 2255816 + 102013075 AGCD01052997;AGCD01052998;AGCD01052999;AGCD01053000;AGCD01053001;AGCD01053002;AGCD01053003;AGCD01053004;GBBH01073042;XM_005400865 XP_005400922 MODEL 39133703 mirna MIR802 microRNA 802 8913972 protein-coding Lypla1 lysophospholipase 1 ENCODES a protein that exhibits glycerophospholipase activity (ortholog); lipase activity (ortholog); palmitoyl-(protein) hydrolase activity (ortholog); INVOLVED IN fatty acid transport (ortholog); negative regulation of aggrephagy (ortholog); negative regulation of Golgi to plasma membrane protein transport (ortholog); PARTICIPATES IN glycerophospholipid metabolic pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); endoplasmic reticulum (ortholog) NW_004955454 13356851 13385110 - 102006208 AGCD01045433;AGCD01045434;AGCD01045435;GBCE01116225;GBCQ01036607;XM_005396070 XP_005396127 MODEL 8701229 protein-coding Capn7 calpain 7 ENCODES a protein that exhibits endopeptidase activity (ortholog); MIT domain binding (ortholog); INVOLVED IN positive regulation of epithelial cell migration (ortholog); proteolysis (ortholog); self proteolysis (ortholog) NW_004955430 2269274 2307801 - 102014700 AGCD01029162;GBBH01149851;GBDF01192466;XM_005387313 XP_005387370 MODEL 8753930 ncrna LOC102005104 uncharacterized LOC102005104 NW_004955405 37762470 37765454 + 102005104 AGCD01005459;GBDF01250665;XR_001236112 MODEL 10100638 pseudo LOC106149099 chromobox protein homolog 3 pseudogene NW_004955437 12227772 12228320 + 106149099 AGCD01034603 MODEL 8786728 pseudo LOC102024737 40S ribosomal protein S17 pseudogene NW_004955447 5024803 5026104 - 102024737 AGCD01040736 MODEL 10290019 protein-coding LOC106147628 protein FAM127A-like NW_004955602 166367 166924 + 106147628 AGCD01076765;GBCE01132544;GBDJ01263326;XM_013510079 XP_013365533 MODEL 9057192 protein-coding LOC102017183 C-C motif chemokine 3-like NW_004955451 86252 88039 - 102017183 AGCD01042917;GBDK01356227;XM_013519438 XP_013374892 MODEL 9012848 protein-coding Golga2 golgin A2 ENCODES a protein that exhibits identical protein binding (ortholog); importin-alpha family protein binding (ortholog); microtubule binding (ortholog); INVOLVED IN asymmetric cell division (ortholog); centrosome cycle (ortholog); endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); ASSOCIATED WITH Developmental Delay with Hypotonia, Myopathy, and Brain Abnormalities (ortholog); neuromuscular disease (ortholog); FOUND IN cis-Golgi network (ortholog); COPII-coated ER to Golgi transport vesicle (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955570 782218 799044 - 102023086 AGCD01074765;AGCD01074766;GBDK01012403;XM_005413532;XM_013509386;XM_013509387;XM_013509388;XM_013509389 XP_005413589;XP_013364840;XP_013364841;XP_013364842;XP_013364843 MODEL 8865245 protein-coding LOC102022333 olfactory receptor 4K2-like NW_004955550 537881 538840 - 102022333 AGCD01072509;XM_005412133 XP_005412190 MODEL 8723545 pseudo LOC102016789 calcyclin-binding protein pseudogene NW_004955460 3491190 3491890 + 102016789 AGCD01048410 MODEL 8991204 ncrna LOC102021988 uncharacterized LOC102021988 NW_004955422 26750279 26754798 - 102021988 AGCD01023300;GBDF01187334;XR_001233969;XR_001233970 MODEL 8721457 protein-coding LOC102022684 serpin B9-like NW_004955465 10437606 10476747 - 102022684 AGCD01050510;GBCB01089957;XM_005398917;XM_005398918;XM_005398928;XM_013521824;XM_013521825;XM_013521826;XM_013521827 XP_005398974;XP_005398975;XP_005398985;XP_013377278;XP_013377279;XP_013377280;XP_013377281 MODEL 8733781 protein-coding Ywhab tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta ENCODES a protein that exhibits enzyme binding (ortholog); histone deacetylase binding (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of DNA-templated transcription (ortholog); negative regulation of G protein-coupled receptor signaling pathway (ortholog); negative regulation of protein import into nucleus (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; mTOR signaling pathway; phosphatidylinositol 3-kinase-Akt signaling pathway; ASSOCIATED WITH brain ischemia (ortholog); Experimental Seizures (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955445 12451644 12474251 - 102015467 AGCD01039751;GBDF01121283;XM_005392462 XP_005392519 MODEL 10204506 pseudo LOC106148845 sodium bicarbonate cotransporter 3 pseudogene NW_004955430 19041409 19042522 - 106148845 AGCD01029704 MODEL 10292722 pseudo LOC106146806 60S ribosomal protein L38 pseudogene NW_004955495 3558234 3560924 + 106146806 AGCD01061862 MODEL 8748300 protein-coding Il12rb2 interleukin 12 receptor subunit beta 2 ENCODES a protein that exhibits coreceptor activity (ortholog); protein kinase binding (ortholog); INVOLVED IN interleukin-12-mediated signaling pathway (ortholog); peptidyl-tyrosine phosphorylation (ortholog); positive regulation of natural killer cell proliferation (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-27 signaling pathway; ASSOCIATED WITH Brain Injuries (ortholog); primary biliary cholangitis 3 (ortholog); FOUND IN external side of plasma membrane (ortholog); interleukin-12 receptor complex (ortholog) NW_004955423 23774557 23806744 - 102015967 AGCD01024017;AGCD01024018;GBBH01120818;GBDF01250178;XM_013514509 XP_013369963 MODEL 8923305 protein-coding Lrrc49 leucine rich repeat containing 49 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN microtubule cytoskeleton organization (ortholog); FOUND IN centriolar satellite (ortholog); microtubule (ortholog) NW_004955450 5903345 6030279 - 102009445 AGCD01042514;AGCD01042515;AGCD01042516;AGCD01042517;AGCD01042518;GBDF01051822;XM_005393636;XM_005393637;XM_005393639 XP_005393693;XP_005393694;XP_005393696 MODEL 8858887 protein-coding Gcc1 GRIP and coiled-coil domain containing 1 ASSOCIATED WITH cannabis abuse (ortholog); Cocaine-Related Disorders (ortholog); phencyclidine abuse (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog) NW_004955479 8636274 8642027 - 102022917 AGCD01056451;GBBH01036831;XM_005402361 XP_005402418 MODEL 9044945 protein-coding Gpr65 G protein-coupled receptor 65 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cellular response to acidic pH (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH ulcerative colitis (ortholog); FOUND IN early endosome membrane (ortholog); late endosome membrane (ortholog); plasma membrane (ortholog) NW_004955438 10724069 10730868 + 102004423 AGCD01035216;GBDI01162205;XM_005390250 XP_005390307 MODEL 9064580 protein-coding Nphp4 nephrocystin 4 INVOLVED IN flagellated sperm motility (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); photoreceptor cell maintenance (ortholog); ASSOCIATED WITH atypical hemolytic-uremic syndrome (ortholog); Bardet-Biedl syndrome (ortholog); cholestasis (ortholog); FOUND IN cell-cell junction (ortholog); centriole (ortholog); centrosome (ortholog) NW_004955486 6442058 6547451 + 102015638 AGCD01059119;AGCD01059120;GBDF01192861;XM_005404106;XM_005404107;XM_005404108;XM_005404109;XM_005404111;XM_005404112;XM_005404114;XM_005404116;XM_013504271;XM_013504272;XR_001231139;XR_263957 XP_005404163;XP_005404164;XP_005404165;XP_005404166;XP_005404168;XP_005404169;XP_005404171;XP_005404173;XP_013359725;XP_013359726 MODEL 8846267 protein-coding LOC102004061 olfactory receptor 52E4-like NW_004955414 21799689 21800671 + 102004061 AGCD01015432;XM_013511735 XP_013367189 MODEL 8947970 protein-coding LOC102029613 olfactory receptor 2AT4-like NW_004955414 16730191 16731135 + 102029613 AGCD01015222;XM_005379898 XP_005379955 MODEL 8960410 ncrna LOC102008041 uncharacterized LOC102008041 NW_004955402 703396 705592 + 102008041 AGCD01000030;GBCE01120029;XR_001233535 MODEL 8801295 ncrna LOC102013456 uncharacterized LOC102013456 NW_004955559 488549 488991 + 102013456 AGCD01073587;GBDF01109206;XR_264993 MODEL 39132442 snrna U6 U6 spliceosomal RNA 10079119 ncrna LOC106148434 uncharacterized LOC106148434 NW_004955421 22998190 22998884 - 106148434 AGCD01022166;XR_001233875 MODEL 8960158 protein-coding Dffb DNA fragmentation factor subunit beta ENCODES a protein that exhibits DNA binding (ortholog); DNA nuclease activity (ortholog); enzyme binding (ortholog); INVOLVED IN apoptotic chromosome condensation (ortholog); apoptotic DNA fragmentation (ortholog); DNA catabolic process (ortholog); ASSOCIATED WITH Chromosome Breakage (ortholog); transient cerebral ischemia (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); nucleolus (ortholog) NW_004955486 7836013 7849875 - 102021247 AGCD01059138;GBDK01277050;XM_005404126;XM_005404127;XM_005404128;XM_005404129;XM_005404131;XM_013504195 XP_005404183;XP_005404184;XP_005404185;XP_005404186;XP_005404188;XP_013359649 MODEL 10238147 protein-coding LOC106150325 translation initiation factor IF-2-like NW_004955472 1577929 1588095 - 106150325 AGCD01053401;AGCD01053402;GBDI01034980;GBDI01165836;XM_013522927 XP_013378381 MODEL 8803010 pseudo LOC102016422 tubulin alpha-1C chain-like NW_004955437 6993985 6999689 + 102016422 AGCD01034448 MODEL 8944491 ncrna LOC102005111 uncharacterized LOC102005111 NW_004955456 1951198 1954207 + 102005111 AGCD01046243;GBDF01252185;XR_001236331;XR_001236332 MODEL 10366625 pseudo LOC106150181 RNA-binding protein 25 pseudogene NW_004955467 11142720 11143659 + 106150181 AGCD01051602 MODEL 10127670 pseudo LOC106147478 leukocyte immunoglobulin-like receptor subfamily A member 5 NW_004955567 1251305 1263909 - 106147478 AGCD01074465 MODEL 8952085 protein-coding Nuak2 NUAK family kinase 2 ENCODES a protein that exhibits ATP binding (ortholog); magnesium ion binding (ortholog); protein serine kinase activity (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); cellular response to glucose starvation (ortholog); negative regulation of apoptotic process (ortholog); ASSOCIATED WITH Anencephaly 2 (ortholog); FOUND IN nuclear speck (ortholog) NW_004955406 41050396 41069066 - 102007623 AGCD01006670;GBDK01236711;XM_005375354 XP_005375411 MODEL 8854679 ncrna LOC102016790 uncharacterized LOC102016790 NW_004955410 16323394 16399480 - 102016790 AGCD01010958;AGCD01010959;GBBH01192222;XR_001232733;XR_001232734;XR_001232735;XR_001232736;XR_001232737;XR_001232738;XR_001232739;XR_259841 MODEL 10164923 protein-coding LOC106149636 uncharacterized LOC106149636 NW_004955451 14982212 14983207 - 106149636 AGCD01043590;GBDK01413484;XM_013519123 XP_013374577 MODEL 39133779 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 10364050 ncrna LOC106148846 uncharacterized LOC106148846 NW_004955430 16341056 16346012 - 106148846 AGCD01029634;GBDI01373816;XR_001234557 MODEL 8959490 protein-coding LOC102020905 olfactory receptor 52B4-like NW_004955414 20025872 20026816 + 102020905 AGCD01015351;XM_005380463 XP_005380520 MODEL 8745129 protein-coding Ywhae tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon ENCODES a protein that exhibits calcium channel inhibitor activity (ortholog); calcium channel regulator activity (ortholog); enzyme binding (ortholog); INVOLVED IN cellular response to heat (ortholog); cerebral cortex development (ortholog); cytoplasmic pattern recognition receptor signaling pathway (ortholog); PARTICIPATES IN insulin responsive facilitative sugar transporter mediated glucose transport pathway; insulin-like growth factor signaling pathway; mTOR signaling pathway; ASSOCIATED WITH Hirschsprung's disease (ortholog); left ventricular noncompaction (ortholog); Miller-Dieker lissencephaly syndrome (ortholog); FOUND IN axon (ortholog); central region of growth cone (ortholog); cytoplasm (ortholog) NW_004955481 1752778 1805700 + 102023263 AGCD01056848;AGCD01056849;AGCD01056850;AGCD01056851;GBDK01004649;XM_005402631;XM_005402632 XP_005402688;XP_005402689 MODEL 8957824 ncrna LOC102004771 uncharacterized LOC102004771 NW_004955451 12688753 12693749 - 102004771 AGCD01043420;GBDI01181575;XR_001235990;XR_001235991;XR_262597 MODEL 9030809 protein-coding Synpo synaptopodin ENCODES a protein that exhibits actin binding (ortholog); INVOLVED IN positive regulation of actin filament bundle assembly (ortholog); postsynaptic modulation of chemical synaptic transmission (ortholog); regulation of long-term neuronal synaptic plasticity (ortholog); ASSOCIATED WITH chronic kidney disease (ortholog); focal segmental glomerulosclerosis 8 (ortholog); glomerulosclerosis (ortholog); FOUND IN actin cytoskeleton (ortholog); cell periphery (ortholog); cytosol (ortholog) NW_004955415 3929781 3977769 - 102025681 AGCD01015959;AGCD01015960;AGCD01015961;AGCD01015962;GBBH01187369;GBDJ01420980;XM_013512349 XP_013367803 MODEL 8882160 protein-coding Lypla2 lysophospholipase 2 ENCODES a protein that exhibits palmitoyl-(protein) hydrolase activity (ortholog); phosphatidylcholine lysophospholipase A1 activity (ortholog); INVOLVED IN acylglycerol catabolic process (ortholog); prostaglandin catabolic process (ortholog); protein depalmitoylation (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); Golgi stack (ortholog) NW_004955452 3710818 3715047 + 102020746 AGCD01043936;GBBH01001634;XM_005394781 XP_005394838 MODEL 8918642 protein-coding LOC102024739 olfactory receptor 15-like NW_004955581 678582 685104 - 102024739 AGCD01075689;XM_013509728 XP_013365182 MODEL 8983413 protein-coding Efna3 ephrin A3 ENCODES a protein that exhibits ephrin receptor binding (ortholog); INVOLVED IN ephrin receptor signaling pathway (ortholog); negative regulation of angiogenesis (ortholog); positive regulation of amyloid precursor protein catabolic process (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis NW_004955545 1570351 1578610 + 102024852 AGCD01071860;AGCD01071861;GBBH01189460;XM_005411568;XM_005411570;XM_013508362;XM_013508363 XP_005411625;XP_005411627;XP_013363816;XP_013363817 MODEL 8967940 protein-coding Rpl36al ribosomal protein L36a like FOUND IN nucleus (ortholog) NW_004955409 13032499 13033876 + 102030284 AGCD01009587;GBCQ01008014;XM_005376842;XM_005376843 XP_005376899;XP_005376900 MODEL 9004088 protein-coding Hdac1 histone deacetylase 1 ENCODES a protein that exhibits chromatin binding (ortholog); core promoter sequence-specific DNA binding (ortholog); deacetylase activity (ortholog); INVOLVED IN cellular response to oxidative stress (ortholog); cellular response to platelet-derived growth factor stimulus (ortholog); cellular response to tumor necrosis factor (ortholog); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; Hedgehog signaling pathway; histone modification pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); alopecia areata (ortholog); Binge Drinking (ortholog); FOUND IN chromatin (ortholog); cytosol (ortholog); heterochromatin (ortholog) NW_004955452 10636366 10668873 + 102020300 AGCD01044283;AGCD01044284;AGCD01044285;AGCD01044286;GBDF01047145;XM_005395060 XP_005395117 MODEL 10218785 ncrna LOC106149511 uncharacterized LOC106149511 NW_004955448 8055045 8065174 + 106149511 AGCD01041434;GBDJ01296756;XR_001235755 MODEL 10392087 ncrna LOC106149775 uncharacterized LOC106149775 NW_004955453 9670133 9671988 - 106149775 AGCD01044774;GBDJ01395659;XR_001236147 MODEL 8723609 protein-coding LOC102021990 olfactory receptor 18-like NW_004955495 512537 513481 - 102021990 AGCD01061633;XM_013505092 XP_013360546 MODEL 8906443 protein-coding Ctxn2 cortexin 2 NW_004955409 5685318 5695682 - 102013255 AGCD01009321;GBDF01260793;XM_005376706;XM_005376707 XP_005376763;XP_005376764 MODEL 8955153 protein-coding Neto1 neuropilin and tolloid like 1 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); INVOLVED IN anterograde axonal transport of neurotransmitter receptor complex (ortholog); memory (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); FOUND IN excitatory synapse (ortholog); glutamatergic synapse (ortholog); postsynaptic density (ortholog) NW_004955402 56262137 56376105 - 102008044 AGCD01001458;AGCD01001459;AGCD01001460;AGCD01001461;GBDF01158952;XM_005373063;XM_005373064;XM_005373065;XM_013511369;XM_013511373 XP_005373120;XP_005373121;XP_005373122;XP_013366823;XP_013366827 MODEL 8930238 protein-coding Ttc1 tetratricopeptide repeat domain 1 ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN positive regulation of neuroinflammatory response (ortholog); FOUND IN cytosol (ortholog) NW_004955408 13966957 14007238 + 102022786 AGCD01008379;GBDK01146252;XM_005376252;XM_005376253 XP_005376309;XP_005376310 MODEL 39132999 snrna U1 U1 spliceosomal RNA 8750651 protein-coding Tmem185b transmembrane protein 185B NW_004955459 9610905 9613405 + 102016983 AGCD01048164;GBDF01153974;XM_005397652 XP_005397709 MODEL 39133649 mirna MIR873 microRNA 873 8735055 protein-coding Capn8 calpain 8 ENCODES a protein that exhibits calcium-dependent cysteine-type endopeptidase activity (ortholog); identical protein binding (ortholog); INVOLVED IN calcium-dependent self proteolysis (ortholog); ASSOCIATED WITH celiac disease (ortholog) NW_004955520 1340038 1379765 + 102012235 AGCD01068051;AGCD01068052;AGCD01068053;GBCQ01188455;XM_005409235 XP_005409292 MODEL 8801302 protein-coding Rnf151 ring finger protein 151 FOUND IN nucleus (ortholog) NW_004955442 15300228 15303645 - 102013763 AGCD01037864;GBDF01007492;XM_005391495;XM_005391496 XP_005391552;XP_005391553 MODEL 8969917 ncrna LOC102004063 uncharacterized LOC102004063 NW_004955472 11452010 11467899 - 102004063 AGCD01053756;GBBH01126775;XR_001237068;XR_001237069;XR_263569;XR_263571 MODEL 9035395 protein-coding Nphs1 NPHS1 adhesion molecule, nephrin ENCODES a protein that exhibits alpha-actinin binding (ortholog); protein domain specific binding (ortholog); spectrin binding (ortholog); INVOLVED IN cell adhesion (ortholog); gene expression (ortholog); JNK cascade (ortholog); ASSOCIATED WITH AIDS-Associated Nephropathy (ortholog); chronic kidney disease (ortholog); Diabetic Nephropathies (ortholog); FOUND IN basement membrane (ortholog); cell periphery (ortholog); focal adhesion (ortholog) NW_004955468 2715728 2734174 + 102016908 AGCD01051834;GBDJ01423688;XM_013522546;XM_013522547 XP_013378000;XP_013378001 MODEL 10093958 ncrna LOC106149100 uncharacterized LOC106149100 NW_004955437 220552 221779 + 106149100 AGCD01034111;XR_001235056;XR_001235057 MODEL 8866336 ncrna LOC102008048 uncharacterized LOC102008048 NW_004955403 45870106 45876316 - 102008048 AGCD01002838;GBDJ01116277;XR_259242 MODEL 10119977 protein-coding LOC106147629 vomeronasal type-1 receptor 4-like NW_004955603 55831 82298 - 106147629 AGCD01076806;AGCD01076807;AGCD01076808;XM_013510081 XP_013365535 MODEL 8826170 protein-coding LOC102022334 zinc finger protein 227 NW_004955555 1633022 1640505 + 102022334 AGCD01073093;AGCD01073094;AGCD01073095;GBDF01014099;GBDJ01402956;XM_005412461 XP_005412518 MODEL 8765103 protein-coding Golga3 golgin A3 FOUND IN cytosol (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog) NW_004955482 272430 313499 + 102017337 AGCD01057168;AGCD01057169;GBDJ01410803;XM_005402941;XM_005402942 XP_005402998;XP_005402999 MODEL 8930748 protein-coding LOC102022685 putative olfactory receptor 10D4 NW_004955412 24755548 24756486 + 102022685 AGCD01013125;XM_013510992 XP_013366446 MODEL 10117654 ncrna LOC106147772 uncharacterized LOC106147772 NW_004955410 4932099 4969729 - 106147772 AGCD01010673;GBDF01228036;XR_001232723 MODEL 8863334 ncrna LOC102016427 uncharacterized LOC102016427 NW_004955442 4388403 4394267 - 102016427 AGCD01037526;GBDF01208690;XR_262113 MODEL 10365431 ncrna LOC106148298 uncharacterized LOC106148298 NW_004955419 13207235 13208926 - 106148298 AGCD01019997;GBDF01206393;XR_001233598 MODEL 8738608 protein-coding LOC102020167 interferon-inducible GTPase 5 NW_004955555 1452146 1455263 + 102020167 AGCD01073082;XM_005412455 XP_005412512 MODEL 10126966 ncrna LOC106146807 uncharacterized LOC106146807 NW_004955495 7047585 7050036 + 106146807 AGCD01062115;GBDF01187501;XR_001231388 MODEL 10097059 ncrna LOC106150182 uncharacterized LOC106150182 NW_004955467 520562 521980 + 106150182 AGCD01051224;XR_001236839 MODEL 10187389 protein-coding LOC106147479 proline-rich protein 2-like NW_004955567 1865294 1866342 + 106147479 AGCD01074496;GBDF01087157;XM_013509235 XP_013364689 MODEL 8743696 protein-coding Lrrc4b leucine rich repeat containing 4B ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN positive regulation of synapse assembly (ortholog); regulation of postsynaptic density assembly (ortholog); regulation of presynapse assembly (ortholog); FOUND IN cerebellar mossy fiber (ortholog); glutamatergic synapse (ortholog); postsynaptic density membrane (ortholog) NW_004955559 621458 651007 + 102016527 AGCD01073602;AGCD01073603;AGCD01073604;AGCD01073605;AGCD01073606;GBDF01015462;XM_013509059 XP_013364513 MODEL 10383215 protein-coding LOC106149637 translation initiation factor IF-2-like NW_004955451 16913430 16916574 + 106149637 AGCD01043712;GBDF01096346;XM_013519132 XP_013374586 MODEL 8958151 protein-coding Gpr68 G protein-coupled receptor 68 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cellular response to acidic pH (ortholog); cellular response to pH (ortholog); ASSOCIATED WITH amelogenesis imperfecta (ortholog); amelogenesis imperfecta type 2A6 (ortholog); COVID-19 (ortholog); FOUND IN plasma membrane (ortholog) NW_004955438 13553770 13575093 - 102017506 AGCD01035292;AGCD01035293;AGCD01035294;GBCE01179739;XM_005390296;XM_005390297;XM_005390298;XM_005390300;XM_005390301;XM_005390303;XM_013517223;XM_013517224 XP_005390353;XP_005390354;XP_005390355;XP_005390357;XP_005390358;XP_005390360;XP_013372677;XP_013372678 MODEL 8814483 protein-coding LOC102017184 chromosome unknown open reading frame, human C10orf120 NW_004955841 7610 9412 + 102017184 AGCD01078471;GBDF01079972;XM_005415128 XP_005415185 MODEL 9045655 ncrna LOC102029614 uncharacterized LOC102029614 NW_004955473 3111742 3185044 + 102029614 AGCD01053916;AGCD01053917;AGCD01053918;AGCD01053919;AGCD01053920;GBDJ01285228;XR_001237112;XR_001237113;XR_001237114;XR_263577;XR_263578 MODEL 8755608 ncrna LOC102013457 uncharacterized LOC102013457 NW_004955567 1568026 1577962 + 102013457 AGCD01074483;AGCD01074484;GBDF01014518;XR_265032 MODEL 9060619 pseudo LOC102004774 protein FRG1 pseudogene NW_004955452 2196007 2237809 - 102004774 AGCD01043881;AGCD01043882;AGCD01043883;AGCD01043884 MODEL 8733871 protein-coding Vapb VAMP associated protein B and C ENCODES a protein that exhibits beta-tubulin binding (ortholog); enzyme binding (ortholog); FFAT motif binding (ortholog); INVOLVED IN cholesterol transport (ortholog); COPII-coated vesicle budding (ortholog); endoplasmic reticulum organization (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); amyotrophic lateral sclerosis type 1 (ortholog); amyotrophic lateral sclerosis type 8 (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum exit site (ortholog) NW_004955445 1098454 1122879 - 102020498 AGCD01039329;GBCB01006709;XM_013518235 XP_013373689 MODEL 8844479 protein-coding Dgat1 diacylglycerol O-acyltransferase 1 ENCODES a protein that exhibits 2-acylglycerol O-acyltransferase activity (ortholog); acyltransferase activity (ortholog); diacylglycerol binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); fatty acid homeostasis (ortholog); glycerolipid metabolic process (ortholog); PARTICIPATES IN retinol metabolic pathway; vitamin A deficiency pathway; ASSOCIATED WITH cardiomyopathy (ortholog); chronic kidney disease (ortholog); congenital diarrhea 7 with exudative enteropathy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955454 2933904 2944675 - 102029149 AGCD01045040;GBDK01293190;XM_005395868 XP_005395925 MODEL 10093974 protein-coding LOC106150326 uncharacterized LOC106150326 NW_004955472 7377896 7382389 + 106150326 AGCD01053621;AGCD01053622;GBDJ01034346;XM_013522929 XP_013378383 MODEL 8821253 pseudo LOC102013054 nuclear inhibitor of protein phosphatase 1-like NW_004955407 28446035 28447589 + 102013054 AGCD01007586 MODEL 8949287 pseudo LOC102005113 basigin pseudogene NW_004955408 34149587 34150365 + 102005113 AGCD01008895;XM_005376594 MODEL 9005901 protein-coding Lyplal1 lysophospholipase like 1 ENCODES a protein that exhibits hydrolase activity, acting on ester bonds (ortholog); lipase activity (ortholog); palmitoyl-(protein) hydrolase activity (ortholog); INVOLVED IN negative regulation of cGAS/STING signaling pathway (ortholog); negative regulation of Golgi to plasma membrane protein transport (ortholog); protein depalmitoylation (ortholog); FOUND IN cytosol (ortholog); mitochondrion (ortholog) NW_004955520 4251863 4281775 - 102028123 AGCD01068116;GBDK01285066;XM_005409278 XP_005409335 MODEL 8951046 pseudo LOC102022339 RING-box protein 2 pseudogene NW_004955563 1440099 1440434 - 102022339 AGCD01074147 MODEL 8895145 protein-coding Il13 interleukin 13 ENCODES a protein that exhibits cytokine activity (ortholog); interleukin-13 receptor binding (ortholog); INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (ortholog); cellular response to cytokine stimulus (ortholog); cellular response to mechanical stimulus (ortholog); PARTICIPATES IN Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); adenoid hypertrophy (ortholog); alcoholic hepatitis (ortholog); FOUND IN cytoplasm (ortholog); external side of plasma membrane (ortholog); extracellular region (ortholog) NW_004955408 4046406 4049795 + 102030278 AGCD01008086;GBBH01173848;XM_005376104;XM_013508342 XP_005376161;XP_013363796 MODEL 8747246 protein-coding Efna4 ephrin A4 ENCODES a protein that exhibits ephrin receptor binding (ortholog) NW_004955545 1557107 1561234 + 102024509 AGCD01071859;GBDF01210187;XM_005411567 XP_005411624 MODEL 8974161 ncrna LOC102016791 uncharacterized LOC102016791 NW_004955410 25871229 25872193 - 102016791 AGCD01011179;GBDF01236142;XR_001232715 MODEL 10233527 ncrna LOC106149512 uncharacterized LOC106149512 NW_004955448 18810351 18811813 - 106149512 AGCD01041753;GBDI01094163;XR_001235756 MODEL 39134305 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 9015618 protein-coding Gcc2 GRIP and coiled-coil domain containing 2 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN Golgi ribbon formation (ortholog); Golgi to plasma membrane protein transport (ortholog); late endosome to Golgi transport (ortholog); ASSOCIATED WITH sensorineural hearing loss (ortholog); FOUND IN Golgi apparatus (ortholog); nucleoplasm (ortholog); trans-Golgi network (ortholog) NW_004955470 12011606 12053625 + 102007649 AGCD01052917;AGCD01052918;GBBH01118856;GBDF01123288;XM_005400800;XM_013522791;XM_013522792 XP_005400857;XP_013378245;XP_013378246 MODEL 10261112 ncrna LOC106148847 uncharacterized LOC106148847 NW_004955430 16358342 16384515 + 106148847 AGCD01029635;GBDK01031227;XR_001234558;XR_001234559 MODEL 8719517 protein-coding LOC102023061 uncharacterized LOC102023061 NW_004955513 3164898 3174163 + 102023061 AGCD01066896;GBDF01158696;XM_005408461 XP_005408518 MODEL 10171688 ncrna LOC106148436 uncharacterized LOC106148436 NW_004955421 20916639 20997826 - 106148436 AGCD01022099;GBCE01082490;XR_001233877;XR_001233878;XR_001233879;XR_001233880 MODEL 9051021 protein-coding Ttc12 tetratricopeptide repeat domain 12 INVOLVED IN axonemal dynein complex assembly (ortholog); sperm axoneme assembly (ortholog); ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); alcohol dependence (ortholog); Asthenozoospermia (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog) NW_004955412 14945237 15011560 + 102007096 AGCD01012863;AGCD01012864;AGCD01012865;GBDF01016223;XM_005378139;XM_005378141;XM_005378142;XM_013511097 XP_005378196;XP_005378198;XP_005378199;XP_013366551 MODEL 39132443 snrna U6 U6 spliceosomal RNA 10318042 ncrna LOC106149365 uncharacterized LOC106149365 NW_004955444 3353278 3364498 - 106149365 AGCD01038790;GBDF01113534;XR_001235503 MODEL 9005123 protein-coding LOC102024740 xin actin-binding repeat-containing protein 2-like NW_004955449 7054636 7060470 - 102024740 AGCD01041972;XM_005393430 XP_005393487 MODEL 8822490 pseudo LOC102008050 mitochondrial import receptor subunit TOM22 homolog pseudogene NW_004955452 2641703 2642225 - 102008050 AGCD01043901 MODEL 9062543 pseudo LOC102021993 60S ribosomal protein L39 pseudogene NW_004955426 23811335 23811493 - 102021993 AGCD01026658;XM_005386237 MODEL 8746595 protein-coding Hdac10 histone deacetylase 10 ENCODES a protein that exhibits acetylputrescine deacetylase activity (ortholog); acetylspermidine deacetylase activity (ortholog); deacetylase activity (ortholog); INVOLVED IN homologous recombination (ortholog); macroautophagy (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); histone deacetylase complex (ortholog) NW_004955413 33272600 33277893 - 102024549 AGCD01014661;GBDJ01361594;XM_013511371;XM_013511372 XP_013366825;XP_013366826 MODEL 8942368 pseudo LOC102016428 high mobility group protein B2 pseudogene NW_004955442 15397676 15398555 - 102016428 AGCD01037870 MODEL 8928607 protein-coding Nub1 negative regulator of ubiquitin like proteins 1 INVOLVED IN positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); proteasomal protein catabolic process (ortholog); protein ubiquitination (ortholog); FOUND IN Lewy body (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955491 5709791 5737620 + 102008738 AGCD01060499;GBDF01010397;XM_005404832 XP_005404889 MODEL 10214378 ncrna LOC106147773 uncharacterized LOC106147773 NW_004955410 6400278 6478834 + 106147773 AGCD01010701;AGCD01010702;AGCD01010703;GBCB01124281;XR_001232724 MODEL 10124876 ncrna LOC106149776 uncharacterized LOC106149776 NW_004955453 16271268 16279490 - 106149776 AGCD01044899;AGCD01044900;GBBH01153623;XR_001236149;XR_001236150 MODEL 9015847 pseudo LOC102020908 proteasome subunit beta type-5 pseudogene NW_004955475 1656818 1658188 - 102020908 AGCD01054757 MODEL 39133002 snrna U1 U1 spliceosomal RNA 39133728 mirna MIR874 microRNA 874 10229386 ncrna LOC106150183 uncharacterized LOC106150183 NW_004955467 11306985 11312980 - 106150183 AGCD01051607;GBDF01161825;XR_001236842;XR_001236843 MODEL 8873736 pseudo LOC102016431 prefoldin subunit 4 pseudogene NW_004955443 6937105 6937491 - 102016431 AGCD01038268 MODEL 10178226 pseudo LOC106147364 chromobox protein homolog 3 pseudogene NW_004955547 1380826 1382012 + 106147364 AGCD01072219 MODEL 8914806 protein-coding Capn9 calpain 9 ASSOCIATED WITH hypertension (ortholog); stomach cancer (ortholog) NW_004955492 7809188 7845090 - 102011876 AGCD01060804;GBBH01138772;XM_005404988 XP_005405045 MODEL 8850321 protein-coding Synpo2 synaptopodin 2 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); alpha-actinin binding (ortholog); filamin binding (ortholog); INVOLVED IN autophagosome assembly (ortholog); chaperone-mediated autophagy (ortholog); positive regulation of actin filament bundle assembly (ortholog); ASSOCIATED WITH ovarian carcinoma (ortholog); FOUND IN actin cytoskeleton (ortholog); focal adhesion (ortholog); nucleus (ortholog) NW_004955428 21152210 21323254 - 102025603 AGCD01028133;AGCD01028134;AGCD01028135;GBDJ01019222;XM_005386805;XM_013515263 XP_005386862;XP_013370717 MODEL 8927884 pseudo LOC102004065 ribonuclease UK114-like NW_004955474 6358259 6358744 - 102004065 AGCD01054474 MODEL 9013798 ncrna LOC102029627 uncharacterized LOC102029627 NW_004955481 8789459 8843077 + 102029627 AGCD01057089;AGCD01057090;GBDF01193476;XR_001230945;XR_001230946;XR_263790 MODEL 8888443 protein-coding Gcdh glutaryl-CoA dehydrogenase ENCODES a protein that exhibits fatty-acyl-CoA binding (ortholog); flavin adenine dinucleotide binding (ortholog); glutaryl-CoA dehydrogenase activity (ortholog); INVOLVED IN acyl-CoA metabolic process (ortholog); fatty acid beta-oxidation using acyl-CoA dehydrogenase (ortholog); fatty acid oxidation (ortholog); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; carnitine palmitoyltransferase I deficiency pathway; ethylmalonic encephalopathy pathway; ASSOCIATED WITH congenital dyserythropoietic anemia type IVa (ortholog); genetic disease (ortholog); glutaric acidemia I (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog); nucleus (ortholog) NW_004955415 31952400 31958067 + 102025456 AGCD01016704;GBDI01005012;XM_005381040 XP_005381097 MODEL 8945037 protein-coding Gpr75 G protein-coupled receptor 75 ENCODES a protein that exhibits C-C chemokine receptor activity (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN chemokine-mediated signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); FOUND IN plasma membrane (ortholog) NW_004955441 19576490 19579447 - 102004010 AGCD01037354;XM_005391028 XP_005391085 MODEL 8883953 protein-coding LOC102013462 uncharacterized LOC102013462 NW_004955402 4568211 4580597 + 102013462 AGCD01000124;AGCD01000125;GBBH01104032;XM_013518141 XP_013373595 MODEL 10260490 protein-coding LOC106147630 vomeronasal type-1 receptor 2-like NW_004955603 108582 109481 - 106147630 AGCD01076812;XM_013510082 XP_013365536 MODEL 8810910 ncrna LOC102022688 uncharacterized LOC102022688 NW_004955413 29141607 29153942 + 102022688 AGCD01014577;AGCD01014578;GBDJ01336894;XR_260122 MODEL 9037958 protein-coding Vars1 valyl-tRNA synthetase 1 ENCODES a protein that exhibits valine-tRNA ligase activity (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); microcephaly (ortholog); FOUND IN cytosol (ortholog) NW_004955437 308709 320084 - 102028573 AGCD01034118;GBCE01031321;GBCE01031326;XM_005389386;XM_005389387 XP_005389443;XP_005389444 MODEL 10313172 ncrna LOC106150327 uncharacterized LOC106150327 NW_004955472 2834860 2839447 + 106150327 AGCD01053492;GBCE01043397;XR_001237070;XR_001237071 MODEL 8841209 protein-coding Ctxn3 cortexin 3 NW_004955415 731895 741765 + 102030412 AGCD01015853;XM_005380546 XP_005380603 MODEL 9028613 protein-coding Lyrm1 LYR motif containing 1 FOUND IN mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955493 186550 208082 + 102003147 AGCD01060841;AGCD01060842;AGCD01060843;GBBH01187409;GBDF01145996;XM_005405038 XP_005405095 MODEL 8964610 protein-coding Neto2 neuropilin and tolloid like 2 ENCODES a protein that exhibits ionotropic glutamate receptor binding (ortholog); INVOLVED IN neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); regulation of neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); ASSOCIATED WITH adenoid cystic carcinoma (ortholog); COVID-19 (ortholog); prostate cancer (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynaptic density (ortholog); postsynaptic density membrane (ortholog) NW_004955474 8035874 8106397 + 102005370 AGCD01054539;AGCD01054540;AGCD01054541;AGCD01054542;GBDF01252896;XM_005401465 XP_005401522 MODEL 8781554 protein-coding Tmem186 transmembrane protein 186 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); FOUND IN mitochondrial complex I intermediate assembly complex (ortholog); mitochondrion (ortholog) NW_004955442 9411849 9414017 + 102017711 AGCD01037679;GBCE01085350;XM_005391218 XP_005391275 MODEL 8759185 protein-coding Il13ra1 interleukin 13 receptor subunit alpha 1 ENCODES a protein that exhibits interleukin-13 receptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (ortholog); interleukin-13-mediated signaling pathway (ortholog); positive regulation of B cell proliferation (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH asthma (ortholog); atopic dermatitis (ortholog); bronchiolitis obliterans (ortholog); FOUND IN interleukin-13 receptor complex (ortholog); interleukin-4 receptor complex (ortholog); plasma membrane (ortholog) NW_004955534 1157758 1205158 - 102016635 AGCD01070487;GBDI01133443;XM_005410457;XM_013507707 XP_005410514;XP_013363161 MODEL 10256821 ncrna LOC106147480 uncharacterized LOC106147480 NW_004955567 18679 19665 - 106147480 AGCD01074372;GBCE01161374;XR_001232400;XR_001232401 MODEL 9015848 protein-coding Efna5 ephrin A5 ENCODES a protein that exhibits chemorepellent activity (ortholog); ephrin receptor binding (ortholog); neurotrophin TRKB receptor binding (ortholog); INVOLVED IN apoptotic process (ortholog); axon guidance (ortholog); axonal fasciculation (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH anencephaly (ortholog); COVID-19 (ortholog); Reperfusion Injury (ortholog); FOUND IN adherens junction (ortholog); basement membrane (ortholog); cell periphery (ortholog) NW_004955418 6919270 7188561 + 102021764 AGCD01018883;AGCD01018884;AGCD01018885;GBDJ01318639;XM_005382179 XP_005382236 MODEL 10220636 protein-coding LOC106149638 uncharacterized LOC106149638 NW_004955451 16975956 16979090 + 106149638 AGCD01043714;AGCD01043715;GBDI01210473;XM_013519133 XP_013374587 MODEL 10222023 ncrna LOC106148848 uncharacterized LOC106148848 NW_004955430 2251749 2261400 - 106148848 AGCD01029161;AGCD01029162;GBDF01141525;XR_001234560 MODEL 8734750 protein-coding Lrrc4c leucine rich repeat containing 4C ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); cell-cell adhesion mediator activity (ortholog); INVOLVED IN modulation of chemical synaptic transmission (ortholog); regulation of axonogenesis (ortholog); synaptic membrane adhesion (ortholog); FOUND IN glutamatergic synapse (ortholog); membrane (ortholog); postsynaptic density membrane (ortholog) NW_004955422 5637650 6854173 + 102028978 AGCD01022582;AGCD01022583;AGCD01022584;AGCD01022585;AGCD01022586;AGCD01022587;AGCD01022588;AGCD01022589;AGCD01022590;AGCD01022591;AGCD01022592;AGCD01022593;AGCD01022594;AGCD01022595;AGCD01022596;AGCD01022597;AGCD01022598;AGCD01022599;AGCD01022600;AGCD01022601;AGCD01022602;AGCD01022603;AGCD01022604;AGCD01022605;AGCD01022606;AGCD01022607;AGCD01022608;AGCD01022609;GBBH01192644;XM_005384093;XM_005384094;XM_005384095;XM_005384097;XM_013514327;XR_001234018 XP_005384150;XP_005384151;XP_005384152;XP_005384154;XP_013369781 MODEL 39132444 snrna U6 U6 spliceosomal RNA 8796026 ncrna LOC102004776 uncharacterized LOC102004776 NW_004955405 37643987 37648127 + 102004776 AGCD01005457;GBDJ01389922;XR_259437 MODEL 8760228 protein-coding Rpl37 ribosomal protein L37 ENCODES a protein that exhibits MDM2/MDM4 family protein binding (ortholog); structural constituent of ribosome (ortholog); ubiquitin ligase inhibitor activity (ortholog); INVOLVED IN cytoplasmic translation (ortholog); positive regulation of signal transduction by p53 class mediator (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; FOUND IN cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog) NW_004955426 25120024 25122559 - 102025926 AGCD01026702;GBDJ01023269;XM_005415269 XP_005415326 MODEL 8845780 protein-coding LOC102013056 olfactory receptor 6C74 NW_004955458 2437549 2438499 - 102013056 AGCD01047233;XM_005397240 XP_005397297 MODEL 8850642 protein-coding Golga4 golgin A4 ENCODES a protein that exhibits GTPase binding (ortholog); INVOLVED IN Golgi to plasma membrane protein transport (ortholog); positive regulation of axon extension (ortholog); ASSOCIATED WITH Arsenic Poisoning (ortholog); Prostatic Neoplasms (ortholog); skin disease (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955421 4130040 4251968 + 102008540 AGCD01021680;AGCD01021681;AGCD01021682;AGCD01021683;AGCD01021684;AGCD01021685;AGCD01021686;GBCB01002191;XM_005383706;XM_005383707;XM_005383709;XM_013513730 XP_005383763;XP_005383764;XP_005383766;XP_013369184 MODEL 8819018 protein-coding Dgat2 diacylglycerol O-acyltransferase 2 ENCODES a protein that exhibits 2-acylglycerol O-acyltransferase activity (ortholog); diacylglycerol O-acyltransferase activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to oleic acid (ortholog); cholesterol homeostasis (ortholog); diacylglycerol biosynthetic process (ortholog); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2A1 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); cholestasis (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); lipid droplet (ortholog) NW_004955414 16059781 16089727 - 102022183 AGCD01015197;GBDF01054643;XM_005379877;XM_005379878 XP_005379934;XP_005379935 MODEL 10315052 ncrna LOC106148299 uncharacterized LOC106148299 NW_004955419 4395381 4400921 + 106148299 AGCD01019757;GBDF01193037;XR_001233600 MODEL 8857190 pseudo LOC102022344 uncharacterized LOC102022344 NW_004955448 10720131 10725989 + 102022344 AGCD01041500 MODEL 8800042 protein-coding LOC102020170 olfactory receptor 5-like NW_004955567 184657 185601 + 102020170 AGCD01074385;XM_005413399 XP_005413456 MODEL 8709063 protein-coding Hdac11 histone deacetylase 11 ENCODES a protein that exhibits histone deacetylase activity, hydrolytic mechanism (ortholog); INVOLVED IN oligodendrocyte development (ortholog); PARTICIPATES IN histone modification pathway; FOUND IN histone deacetylase complex (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955429 12890939 12907749 - 102005736 AGCD01028733;GBBH01209100;XM_005386979;XM_005386981 XP_005387036;XP_005387038 MODEL 8990206 protein-coding Rnf152 ring finger protein 152 ENCODES a protein that exhibits small GTPase binding (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); negative regulation of TORC1 signaling (ortholog); positive regulation of autophagy (ortholog); FOUND IN lysosomal membrane (ortholog); lysosome (ortholog) NW_004955402 45774565 45846649 - 102018547 AGCD01001142;GBCQ01153583;XM_005373011;XM_005373012;XM_005373013;XM_005373014;XM_013511141 XP_005373068;XP_005373069;XP_005373070;XP_005373071;XP_013366595 MODEL 10154723 ncrna LOC106149101 uncharacterized LOC106149101 NW_004955437 10679433 10685630 - 106149101 AGCD01034566;AGCD01034567;GBBH01222082;XR_001235062 MODEL 8723662 protein-coding LOC102023062 lipocalin-15 NW_004955513 4882042 4887684 - 102023062 AGCD01066943;GBBH01057723;XM_005408552;XM_005408553;XM_013506566 XP_005408609;XP_005408610;XP_013362020 MODEL 10136028 ncrna LOC106148437 uncharacterized LOC106148437 NW_004955403 45687950 45695122 - 106148437 AGCD01002826;XR_001233881 MODEL 8857035 protein-coding LOC102017185 arylamine N-acetyltransferase 2 NW_004955403 42278692 42286695 + 102017185 AGCD01002751;GBDF01111352;XM_005373601;XM_005373602;XM_013513576 XP_005373658;XP_005373659;XP_013369030 MODEL 8796741 protein-coding Ttc13 tetratricopeptide repeat domain 13 NW_004955492 7683353 7743066 + 102010376 AGCD01060802;GBCE01104916;XM_005404982;XM_005404984 XP_005405039;XP_005405041 MODEL 10240852 ncrna LOC106149366 uncharacterized LOC106149366 NW_004955444 2791558 2808030 - 106149366 AGCD01038774;GBDF01233248;XR_001235504 MODEL 10092323 ncrna LOC106147365 uncharacterized LOC106147365 NW_004955547 242646 244648 - 106147365 AGCD01072141;GBDF01303283;XR_001232217;XR_001232218 MODEL 8834284 pseudo LOC102005116 solute carrier family 25 member 36 pseudogene NW_004955459 839058 893923 - 102005116 AGCD01047955;AGCD01047956;AGCD01047957 MODEL 8972225 protein-coding LOC102008052 endogenous retrovirus group K member 21 Rec protein-like NW_004955405 858916 862820 + 102008052 AGCD01004588;GBDF01277735;XM_005374249 XP_005374306 MODEL 10170943 protein-coding LOC106146808 zinc finger protein 331-like NW_004955495 7425189 7428704 - 106146808 AGCD01062137;XM_013505354 XP_013360808 MODEL 8853150 protein-coding Gpr82 G protein-coupled receptor 82 INVOLVED IN adipose tissue development (ortholog); energy homeostasis (ortholog); response to food (ortholog); ASSOCIATED WITH prostate cancer (ortholog) NW_004955565 1075457 1080418 - 102027242 AGCD01074303;GBCE01020711;XM_005413248;XM_013509211 XP_005413305;XP_013364665 MODEL 8859682 ncrna LOC102021998 uncharacterized LOC102021998 NW_004955429 22441592 22449273 - 102021998 AGCD01029027;GBCQ01181689;XR_261383;XR_261384 MODEL 9039786 protein-coding Synpo2l synaptopodin 2 like INVOLVED IN heart morphogenesis (ortholog); positive regulation of Rho protein signal transduction (ortholog); positive regulation of stress fiber assembly (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN nucleus (ortholog); Z disc (ortholog) NW_004955437 18177867 18186772 + 102015048 AGCD01034779;AGCD01034780;GBDF01020164;XM_005389968;XM_005389969 XP_005390025;XP_005390026 MODEL 8701758 ncrna LOC102016793 uncharacterized LOC102016793 NW_004955411 14391251 14392054 - 102016793 AGCD01011917;GBDF01047924;XR_001232836 MODEL 39134306 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 10097058 pseudo LOC106149513 ER membrane protein complex subunit 4 pseudogene NW_004955448 9081038 9081582 - 106149513 AGCD01041460 MODEL 10325194 ncrna LOC106147774 uncharacterized LOC106147774 NW_004955410 7968472 7991531 - 106147774 AGCD01010730;GBDJ01244243;XR_001232725 MODEL 10385494 ncrna LOC106149777 uncharacterized LOC106149777 NW_004955453 11679305 11682774 - 106149777 AGCD01044813;XR_001236151 MODEL 8770583 protein-coding Vars2 valyl-tRNA synthetase 2, mitochondrial ENCODES a protein that exhibits valine-tRNA ligase activity (ortholog); ASSOCIATED WITH combined oxidative phosphorylation deficiency 1 (ortholog); combined oxidative phosphorylation deficiency 20 (ortholog); genetic disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955583 848166 862360 + 102021820 AGCD01075870;AGCD01075871;GBBH01166970;GBCE01031371;XM_005414326 XP_005414383 MODEL 39131547 protein-coding LYRM1 LYR motif containing 1 8751119 ncrna LOC102016433 uncharacterized LOC102016433 NW_004955447 7660586 7680211 - 102016433 AGCD01040821;GBDF01160216;XR_001235705;XR_001235706;XR_262413 MODEL 8855845 protein-coding Neu1 neuraminidase 1 ENCODES a protein that exhibits exo-alpha-sialidase activity (ortholog); INVOLVED IN oligosaccharide catabolic process (ortholog); positive regulation of neuron projection development (ortholog); regulation of myoblast proliferation (ortholog); ASSOCIATED WITH genetic disease (ortholog); glycoproteinosis (ortholog); Hydrops Fetalis (ortholog); FOUND IN cell junction (ortholog); cell surface (ortholog); lysosomal membrane (ortholog) NW_004955437 378708 383076 - 102030665 AGCD01034127;AGCD01034128;GBDI01136897;XM_005389390 XP_005389447 MODEL 39131589 mirna MIR876 microRNA 876 10287372 ncrna LOC106150184 uncharacterized LOC106150184 NW_004955467 4980227 4989251 - 106150184 AGCD01051378;XR_001236844 MODEL 8772991 protein-coding Tmem19 transmembrane protein 19 ASSOCIATED WITH basal cell carcinoma (ortholog) NW_004955405 11664676 11682531 + 102003407 AGCD01004835;AGCD01004836;GBCQ01149985;XM_005374319 XP_005374376 MODEL 8782942 protein-coding Efnb1 ephrin B1 ENCODES a protein that exhibits ephrin receptor binding (ortholog); INVOLVED IN axon guidance (ortholog); embryonic pattern specification (ortholog); nervous system development (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH craniofrontonasal syndrome (ortholog); craniosynostosis (ortholog); dysostosis (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); glutamatergic synapse (ortholog) NW_004955475 8360504 8372431 + 102015627 AGCD01055040;GBCQ01070936;XM_005401594 XP_005401651 MODEL 9058231 ncrna LOC102024743 uncharacterized LOC102024743 NW_004955594 567771 572432 + 102024743 AGCD01076434;XR_265142 MODEL 10165610 protein-coding LOC106149639 uncharacterized LOC106149639 NW_004955405 41119818 41123580 - 106149639 AGCD01005541;XM_013519136 XP_013374590 MODEL 9004361 protein-coding LOC102029628 ral guanine nucleotide dissociation stimulator-like NW_004955481 70601 74190 + 102029628 AGCD01056778;XM_005402910 XP_005402967 MODEL 8994935 protein-coding Capns1 calpain small subunit 1 ENCODES a protein that exhibits calcium-dependent cysteine-type endopeptidase activity (ortholog); protein-containing complex binding (ortholog); INVOLVED IN protein catabolic process (ortholog); proteolysis (ortholog); ASSOCIATED WITH COVID-19 (ortholog); primary pulmonary hypertension 6 (ortholog); Prostatic Neoplasms (ortholog); FOUND IN calpain complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955468 2446631 2454369 - 102009268 AGCD01051817;AGCD01051818;GBCB01005315;XM_013522335 XP_013377789 MODEL 9045305 protein-coding Gcfc2 GC-rich sequence DNA-binding factor 2 INVOLVED IN spliceosomal complex assembly (ortholog); FOUND IN nucleolus (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955424 10174291 10202201 + 102015216 AGCD01024507;AGCD01024508;GBDF01307374;XM_005385461;XM_013514701 XP_005385518;XP_013370155 MODEL 8823540 pseudo LOC102022691 protein kinase C iota type-like NW_004955471 4564598 4595032 + 102022691 AGCD01053080;AGCD01053081;AGCD01053082;AGCD01053083 MODEL 8747759 protein-coding Ttc14 tetratricopeptide repeat domain 14 NW_004955420 9677626 9687008 + 102017666 AGCD01020761;GBCE01001619;XM_005383061 XP_005383118 MODEL 8881870 protein-coding Nubp1 NUBP iron-sulfur cluster assembly factor 1, cytosolic ENCODES a protein that exhibits iron-sulfur cluster binding (ortholog); INVOLVED IN centrosome localization (ortholog); intracellular iron ion homeostasis (ortholog); iron-sulfur cluster assembly (ortholog); PARTICIPATES IN cytosolic iron-sulfur cluster protein assembly pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); iron-sulfur cluster assembly complex (ortholog) NW_004955442 7717422 7732496 - 102007706 AGCD01037628;GBDK01193633;XM_005391184;XM_005391186 XP_005391241;XP_005391243 MODEL 39133005 snrna U1 U1 spliceosomal RNA 8944476 protein-coding Nphs2 NPHS2 stomatin family member, podocin INVOLVED IN actin cytoskeleton organization (ortholog); gene expression (ortholog); metanephric podocyte development (ortholog); ASSOCIATED WITH Albuminuria (ortholog); chronic kidney disease (ortholog); familial nephrotic syndrome (ortholog); FOUND IN cell periphery (ortholog); cell-cell junction (ortholog); cytoplasmic side of plasma membrane (ortholog) NW_004955406 18862054 18885214 - 102004671 AGCD01006068;GBCQ01094701;XM_005374960;XM_005374961 XP_005375017;XP_005375018 MODEL 39131569 protein-coding CTXND1 cortexin domain containing 1 9004106 ncrna LOC102020909 uncharacterized LOC102020909 NW_004955477 8629295 8651210 - 102020909 AGCD01055648;GBDF01115855;XR_263663 MODEL 8841048 protein-coding Dgat2l6 diacylglycerol O-acyltransferase 2 like 6 ENCODES a protein that exhibits diacylglycerol O-acyltransferase activity (ortholog); INVOLVED IN monoacylglycerol biosynthetic process (ortholog); ASSOCIATED WITH prostate cancer (ortholog) NW_004955475 9708402 9733712 + 102020004 AGCD01055069;AGCD01055070;AGCD01055071;GBDJ01212951;XM_005401609 XP_005401666 MODEL 9048969 protein-coding Golga5 golgin A5 ENCODES a protein that exhibits protein homodimerization activity (ortholog); protein-macromolecule adaptor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN Golgi organization (ortholog); Golgi vesicle transport (ortholog); retrograde transport, vesicle recycling within Golgi (ortholog); ASSOCIATED WITH Thyroid Neoplasms (ortholog); FOUND IN cis-Golgi network (ortholog); COPI-coated vesicle membrane (ortholog); Golgi apparatus (ortholog) NW_004955438 14992710 15031297 + 102028339 AGCD01035356;AGCD01035357;AGCD01035358;GBDF01125139;XM_005390333 XP_005390390 MODEL 8860643 protein-coding Capns2 calpain small subunit 2 ENCODES a protein that exhibits calcium-dependent cysteine-type endopeptidase activity (ortholog) NW_004955433 13106820 13107865 + 102005625 AGCD01031676;GBDI01243871;XM_005388318 XP_005388375 MODEL 39134308 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 10236014 ncrna LOC106147775 uncharacterized LOC106147775 NW_004955410 7830208 7834934 + 106147775 AGCD01010723;XR_001232726 MODEL 8764806 protein-coding LOC102004074 uncharacterized LOC102004074 NW_004955420 23886315 23891242 - 102004074 AGCD01021263;AGCD01021264;GBDF01041126;XM_005383365;XM_013513352;XR_001233671;XR_001233672 XP_005383422;XP_013368806 MODEL 8955547 protein-coding Il13ra2 interleukin 13 receptor subunit alpha 2 ENCODES a protein that exhibits cytokine receptor activity (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); immunoglobulin mediated immune response (ortholog); interleukin-13-mediated signaling pathway (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH allergic rhinitis (ortholog); asthma (ortholog); atopic dermatitis (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955490 708144 758195 + 102026754 AGCD01060082;AGCD01060083;AGCD01060084;AGCD01060085;AGCD01060086;GBCE01123394;XM_005404624;XM_013504555;XM_013504556;XM_013504557;XM_013504558;XM_013504559;XM_013504560 XP_005404681;XP_013360009;XP_013360010;XP_013360011;XP_013360012;XP_013360013;XP_013360014 MODEL 10221273 protein-coding LOC106148849 uncharacterized LOC106148849 NW_004955430 6654593 6658656 + 106148849 AGCD01029311;GBBH01050069;XM_013515655;XM_013515656;XM_013515657 XP_013371109;XP_013371110;XP_013371111 MODEL 39132447 snrna U6 U6 spliceosomal RNA 8781863 protein-coding Rnf157 ring finger protein 157 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); positive regulation of dendrite extension (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); Williams-Beuren syndrome (ortholog); FOUND IN cell body (ortholog); cytoplasm (ortholog) NW_004955506 6043473 6125157 + 102029421 AGCD01065398;AGCD01065399;AGCD01065400;AGCD01065401;AGCD01065402;GBBH01035030;GBDF01006339;XM_005407442;XM_005407444 XP_005407499;XP_005407501 MODEL 10201771 ncrna LOC106148438 uncharacterized LOC106148438 NW_004955422 12386011 12390376 - 106148438 AGCD01022794;XR_001233884;XR_001233885 MODEL 9044461 protein-coding LOC102013464 cyclin-dependent kinase inhibitor 1C-like NW_004958204 12 1007 - 102013464 AGCD01081600;GBBH01041050;GBCQ01066908;XM_005415240 XP_005415297 MODEL 8891186 pseudo LOC102004783 histone deacetylase 8 pseudogene NW_004955456 1940192 1940884 - 102004783 AGCD01046243 MODEL 10108927 ncrna LOC106150186 uncharacterized LOC106150186 NW_004955467 5386073 5387338 + 106150186 AGCD01051392;GBDK01033986;XR_001236845 MODEL 10219535 protein-coding LOC106147631 uncharacterized LOC106147631 NW_004955409 12720185 12726855 + 106147631 AGCD01009557;XM_013510083 XP_013365537 MODEL 10183523 ncrna LOC106147366 uncharacterized LOC106147366 NW_004955547 1789443 1794040 + 106147366 AGCD01072246;GBBH01083083;XR_001232219 MODEL 10367360 protein-coding LOC106148300 basic proline-rich protein-like NW_004955419 883945 887269 + 106148300 AGCD01019621;GBDF01146185;GBDI01203700;XM_013513205 XP_013368659 MODEL 10369020 ncrna LOC106150328 uncharacterized LOC106150328 NW_004955472 2417077 2421696 - 106150328 AGCD01053460;XR_001237072 MODEL 9028430 pseudo LOC102022348 40S ribosomal protein S2 pseudogene NW_004955894 10943 11793 + 102022348 AGCD01078600 MODEL 9039203 ncrna LOC102020173 uncharacterized LOC102020173 NW_004955448 665787 671113 + 102020173 AGCD01041236;GBDF01074704;XR_262451 MODEL 10289161 ncrna LOC106147481 uncharacterized LOC106147481 NW_004955567 60768 71971 + 106147481 AGCD01074376;GBCQ01143758;XR_001232402 MODEL 10196533 pseudo LOC106149514 60S ribosomal protein L21 pseudogene NW_004955448 1072913 1073667 - 106149514 AGCD01041251 MODEL 8882482 protein-coding Hdac2 histone deacetylase 2 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); deacetylase activity (ortholog); INVOLVED IN behavioral response to ethanol (ortholog); cardiac muscle cell development (ortholog); cardiac muscle hypertrophy (ortholog); PARTICIPATES IN CHD family mediated chromatin remodeling pathway; Hedgehog signaling pathway; histone modification pathway; ASSOCIATED WITH acute kidney failure (ortholog); acute lymphoblastic leukemia (ortholog); alcohol use disorder (ortholog); FOUND IN chromatin (ortholog); chromosome, telomeric region (ortholog); cytoplasm (ortholog) NW_004955526 2739099 2759640 + 102005296 AGCD01069313;GBCB01025957;XM_005409764 XP_005409821 MODEL 8720094 pseudo LOC102017188 60S acidic ribosomal protein P0-like NW_004955404 6462391 6489586 - 102017188 AGCD01003320;AGCD01003321;AGCD01003322 MODEL 8926373 ncrna LOC102016436 uncharacterized LOC102016436 NW_004955402 16539771 16580734 - 102016436 AGCD01000481;AGCD01000482;AGCD01000483;GBDF01208470;XR_259055 MODEL 8778362 protein-coding Neu2 neuraminidase 2 ENCODES a protein that exhibits exo-alpha-sialidase activity (ortholog); INVOLVED IN ganglioside catabolic process (ortholog); glycoprotein catabolic process (ortholog); oligosaccharide catabolic process (ortholog); FOUND IN catalytic complex (ortholog); cytosol (ortholog) NW_004955453 3054626 3063070 - 102012276 AGCD01044648;XM_005395361;XM_013519769;XM_013519770;XM_013519771 XP_005395418;XP_013375223;XP_013375224;XP_013375225 MODEL 8816049 protein-coding Rpl37a ribosomal protein L37a ENCODES a protein that exhibits large ribosomal subunit rRNA binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH polycystic ovary syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog) NW_004955453 16711597 16715253 - 102022780 AGCD01044909;AGCD01044910;GBDK01000039;XM_005395684 XP_005395741 MODEL 9053258 ncrna LOC102024747 uncharacterized LOC102024747 NW_004955403 33506635 33553903 + 102024747 AGCD01002456;GBDF01239295;XR_001233645;XR_001233646;XR_001233647;XR_001233648;XR_259223 MODEL 8906960 protein-coding LOC102008062 keratin-associated protein 10-10-like NW_004955407 41537601 41546262 - 102008062 AGCD01007870;XM_013505443 XP_013360897 MODEL 10154727 protein-coding LOC106149640 WAS/WASL-interacting protein family member 3 NW_004955451 17153172 17155249 + 106149640 AGCD01043723;AGCD01043724;GBDF01100477;XM_013519134 XP_013374588 MODEL 8967122 pseudo LOC102029632 mitochondrial import inner membrane translocase subunit Tim8 A pseudogene NW_004955419 28664176 28664914 - 102029632 AGCD01020471 MODEL 8995095 protein-coding Gpr83 G protein-coupled receptor 83 ENCODES a protein that exhibits G protein-coupled receptor activity (ortholog); neuropeptide receptor activity (ortholog); INVOLVED IN feeding behavior (ortholog); G protein-coupled receptor signaling pathway (ortholog); neuropeptide signaling pathway (ortholog); FOUND IN cilium (ortholog); non-motile cilium (ortholog); plasma membrane (ortholog) NW_004955414 216867 229659 + 102018078 AGCD01014711;GBDF01221194;GBDF01221196;XM_005379679;XM_005379680 XP_005379736;XP_005379737 MODEL 8741204 protein-coding Synpr synaptoporin INVOLVED IN modulation of chemical synaptic transmission (ortholog); FOUND IN hippocampal mossy fiber to CA3 synapse (ortholog); synaptic vesicle membrane (ortholog) NW_004955517 2261080 2442271 - 102024268 AGCD01067623;AGCD01067624;AGCD01067625;AGCD01067626;AGCD01067627;AGCD01067628;AGCD01067629;AGCD01067630;GBBH01030467;XM_005409042 XP_005409099 MODEL 10097595 ncrna LOC106149102 uncharacterized LOC106149102 NW_004955437 10700052 10706760 - 106149102 AGCD01034567;XR_001235063 MODEL 8721413 ncrna LOC102020910 uncharacterized LOC102020910 NW_004955416 21877127 21881463 - 102020910 AGCD01017517;AGCD01017518;GBDF01253505;XR_260409 MODEL 39134309 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 9003418 ncrna LOC102023063 uncharacterized LOC102023063 NW_004955432 1324294 1328134 - 102023063 AGCD01030592;GBDF01278395;XR_261499 MODEL 8724412 protein-coding Cubn cubilin ENCODES a protein that exhibits cargo receptor activity (ortholog); hemoglobin binding (ortholog); identical protein binding (ortholog); INVOLVED IN cobalamin catabolic process (ortholog); cobalamin metabolic process (ortholog); cobalamin transport (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); autism spectrum disorder (ortholog); Chronic Benign Proteinuria (ortholog); FOUND IN apical part of cell (ortholog); apical plasma membrane (ortholog); brush border (ortholog) NW_004955429 10789674 11038297 + 102028666 AGCD01028680;AGCD01028681;AGCD01028682;AGCD01028683;AGCD01028684;AGCD01028685;GBCQ01008980;XM_005386965 XP_005387022 MODEL 10346777 protein-coding LOC106147482 uncharacterized LOC106147482 NW_004955567 1149476 1179237 - 106147482 AGCD01074460;AGCD01074461;XM_013509289 XP_013364743 MODEL 10276266 protein-coding LOC106147776 uncharacterized LOC106147776 NW_004955402 33179062 33219636 - 106147776 AGCD01000837;AGCD01000838;GBDF01122938;XM_013510528 XP_013365982 MODEL 39132449 snrna U6 U6 spliceosomal RNA 10368655 ncrna LOC106148439 uncharacterized LOC106148439 NW_004955422 12236444 12255533 + 106148439 AGCD01022788;GBDJ01318996;XR_001233886 MODEL 8963431 ncrna LOC102013467 uncharacterized LOC102013467 NW_004955404 29028733 29038238 + 102013467 AGCD01003968;GBDF01118402;XR_001235108 MODEL 8798402 protein-coding Il15 interleukin 15 ENCODES a protein that exhibits cytokine activity (ortholog); INVOLVED IN cell maturation (ortholog); cellular response to vitamin D (ortholog); extrathymic T cell selection (ortholog); PARTICIPATES IN Jak-Stat signaling pathway; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); arteriosclerosis (ortholog); aspergillosis (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955471 1496352 1583919 - 102011302 AGCD01052985;GBDJ01349954;XM_005400859;XM_005400860;XM_013522919 XP_005400916;XP_005400917;XP_013378373 MODEL 8877474 protein-coding LOC102022692 natural cytotoxicity triggering receptor 3 ligand 1-like NW_004955414 32112006 32121958 + 102022692 AGCD01015773;AGCD01015774;GBDF01277677;XM_013512028 XP_013367482 MODEL 39133009 snrna U1 U1 spliceosomal RNA 8840939 protein-coding Gcg glucagon ENCODES a protein that exhibits gastric inhibitory polypeptide receptor binding (ortholog); glucagon receptor binding (ortholog); hormone activity (ortholog); INVOLVED IN positive regulation of adenylate cyclase activity; adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN forkhead class A signaling pathway; glucagon signaling pathway; ASSOCIATED WITH Aberrant Crypt Foci (ortholog); Alzheimer's disease (ortholog); Anorexia (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955449 11708152 11716429 + 102018785 AGCD01042092;XM_005393317;XM_013518788 XP_005393374;XP_013374242 MODEL 8879203 protein-coding Ttc16 tetratricopeptide repeat domain 16 ASSOCIATED WITH primary ovarian insufficiency (ortholog) NW_004955419 926561 940368 - 102028539 AGCD01019623;AGCD01019624;GBCE01008925;XM_005382418;XM_013513206;XM_013513208;XM_013513209;XM_013513210;XM_013513211;XM_013513212 XP_005382475;XP_013368660;XP_013368662;XP_013368663;XP_013368664;XP_013368665;XP_013368666 MODEL 8861341 protein-coding Lrrc52 leucine rich repeat containing 52 ENCODES a protein that exhibits potassium channel activator activity (ortholog); potassium channel activity (ortholog); transmembrane transporter binding (ortholog); INVOLVED IN positive regulation of voltage-gated potassium channel activity (ortholog); potassium ion transmembrane transport (ortholog); potassium ion transport (ortholog); FOUND IN voltage-gated potassium channel complex (ortholog) NW_004955462 11115888 11137501 - 102005346 AGCD01049385;GBDF01001668;XM_005398247 XP_005398304 MODEL 8754387 protein-coding Nubp2 NUBP iron-sulfur cluster assembly factor 2, cytosolic PARTICIPATES IN cytosolic iron-sulfur cluster protein assembly pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); iron-sulfur cluster assembly complex (ortholog) NW_004955442 15482916 15486830 - 102022128 AGCD01037875;GBCQ01094849;XM_005391525;XR_001235361;XR_001235362 XP_005391582 MODEL 39133682 mirna MIR9-1 microRNA 9-1 8947708 protein-coding Npl N-acetylneuraminate pyruvate lyase ENCODES a protein that exhibits identical protein binding (ortholog); N-acetylneuraminate lyase activity (ortholog); INVOLVED IN N-acetylneuraminate catabolic process (ortholog); PARTICIPATES IN amino sugar metabolic pathway; french type sialuria pathway; sialic acid storage disease pathway; ASSOCIATED WITH cholestasis (ortholog) NW_004955406 21633979 21670279 + 102020303 AGCD01006137;AGCD01006138;AGCD01006139;GBCQ01042451;GBDJ01355537;XM_005375012;XM_013521483;XM_013521484 XP_005375069;XP_013376937;XP_013376938 MODEL 8964006 protein-coding Lyrm2 LYR motif containing 2 INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); FOUND IN mitochondrion (ortholog) NW_004955411 16361061 16362913 - 102007092 AGCD01011973;GBDK01009548;XM_005415284 XP_005415341 MODEL 8723146 protein-coding Vash1 vasohibin 1 ENCODES a protein that exhibits actin binding (ortholog); metallocarboxypeptidase activity (ortholog); tubulin-tyrosine carboxypeptidase activity (ortholog); INVOLVED IN angiogenesis (ortholog); labyrinthine layer blood vessel development (ortholog); negative regulation of angiogenesis (ortholog); ASSOCIATED WITH liver cirrhosis (ortholog); portal hypertension (ortholog); FOUND IN apical part of cell (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955438 753392 772937 + 102029999 AGCD01034962;AGCD01034963;GBDF01086610;XM_013517177;XM_013517178;XM_013517179 XP_013372631;XP_013372632;XP_013372633 MODEL 8981707 protein-coding Dgcr2 DiGeorge syndrome critical region gene 2 INVOLVED IN cognition (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH autistic disorder (ortholog); DiGeorge syndrome (ortholog); schizophrenia (ortholog); FOUND IN membrane (ortholog) NW_004955442 18857222 18938552 + 102013222 AGCD01038022;AGCD01038023;AGCD01038024;GBDF01052698;XM_005391789;XM_005391790;XM_005391791;XM_005391792 XP_005391846;XP_005391847;XP_005391848;XP_005391849 MODEL 8813664 protein-coding Caprin1 cell cycle associated protein 1 ENCODES a protein that exhibits ATP binding (ortholog); molecular condensate scaffold activity (ortholog); molecular function activator activity (ortholog); INVOLVED IN generation of neurons (ortholog); intracellular mRNA localization (ortholog); membraneless organelle assembly (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); cerebellar ataxia (ortholog); FOUND IN cell leading edge (ortholog); cytoplasm (ortholog); cytoplasmic stress granule (ortholog) NW_004955422 12126893 12170877 - 102018612 AGCD01022776;AGCD01022777;AGCD01022778;AGCD01022779;GBDF01011002;XM_005384149;XM_005384151 XP_005384206;XP_005384208 MODEL 8786719 protein-coding Tmem190 transmembrane protein 190 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN hematopoietic progenitor cell differentiation (ortholog); FOUND IN inner acrosomal membrane (ortholog) NW_004955567 866444 868219 - 102024727 AGCD01074441;GBDF01006612;XM_005413326;XM_013509310 XP_005413383;XP_013364764 MODEL 10300359 ncrna LOC106146809 uncharacterized LOC106146809 NW_004955495 2552739 2556190 + 106146809 AGCD01061781;XR_001231392 MODEL 8998923 protein-coding Efnb2 ephrin B2 ENCODES a protein that exhibits receptor ligand activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN adherens junction organization (ortholog); angiogenesis (ortholog); animal organ morphogenesis (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH colon carcinoma (ortholog); colorectal carcinoma (ortholog); esophagus squamous cell carcinoma (ortholog); FOUND IN cytosol (ortholog); dendrite (ortholog); glutamatergic synapse (ortholog) NW_004955404 5000906 5030068 + 102016557 AGCD01003303;GBDJ01130272;XM_013516817 XP_013372271 MODEL 8897509 protein-coding LOC102021999 uncharacterized LOC102021999 NW_004955511 2647517 2649065 - 102021999 AGCD01066422;GBDF01304076;XM_013506441 XP_013361895 MODEL 8949434 protein-coding LOC102017190 intestinal-type alkaline phosphatase NW_004955453 3503226 3506869 - 102017190 AGCD01044662;GBCQ01177257;XM_005395380 XP_005395437 MODEL 10106014 ncrna LOC106147367 uncharacterized LOC106147367 NW_004955547 1807433 1810934 + 106147367 AGCD01072247;GBDF01058544;XR_001232220 MODEL 8838336 protein-coding LOC102016794 keratinocyte proline-rich protein-like NW_004955465 10120576 10145610 + 102016794 AGCD01050502;GBDF01179227;XM_005398901;XR_001236746;XR_001236747 XP_005398958 MODEL 8805453 protein-coding Rnf166 ring finger protein 166 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); FOUND IN cytoplasm (ortholog) NW_004955541 2604197 2607969 - 102026476 AGCD01071418;GBBH01089671;GBCQ01067513;XM_013507955;XM_013507956;XM_013507957;XM_013507958 XP_013363409;XP_013363410;XP_013363411;XP_013363412 MODEL 10252611 protein-coding LOC106147632 vomeronasal type-1 receptor 2-like NW_004955603 520539 521432 - 106147632 AGCD01076850;XM_013510084 XP_013365538 MODEL 10384276 ncrna LOC106150187 uncharacterized LOC106150187 NW_004955467 10364826 10365205 - 106150187 AGCD01051561;GBCQ01025281;XR_001236846 MODEL 10271143 ncrna LOC106149778 uncharacterized LOC106149778 NW_004955405 13329489 13339098 - 106149778 AGCD01004887;GBDF01151112;XR_001236153 MODEL 10352405 ncrna LOC106148301 uncharacterized LOC106148301 NW_004955419 932461 934628 + 106148301 AGCD01019623;GBDJ01204960;XR_001233610 MODEL 8750954 protein-coding Rpl38 ribosomal protein L38 ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN 90S preribosome assembly (ortholog); axial mesoderm development (ortholog); cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH otitis media (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog) NW_004955553 1129607 1133896 + 102005422 AGCD01072871;GBDF01008122;XM_005412223;XM_005412224;XM_013508666 XP_005412280;XP_005412281;XP_013364120 MODEL 10311755 ncrna LOC106150329 uncharacterized LOC106150329 NW_004955472 12248108 12272311 + 106150329 AGCD01053789;XR_001237073 MODEL 8884979 protein-coding LOC102020175 olfactory receptor 14I1-like NW_004955581 896179 896982 - 102020175 AGCD01075702;XM_013509732 XP_013365186 MODEL 9031049 ncrna LOC102008064 uncharacterized LOC102008064 NW_004955408 4366570 4372625 + 102008064 AGCD01008109;GBDF01296436;XR_001231915;XR_001231916;XR_001231917;XR_001231918;XR_259659 MODEL 10086317 protein-coding LOC106149367 translation initiation factor IF-2-like NW_004955444 11984263 11986007 - 106149367 AGCD01039058;GBCC01010623;GBDF01111163;XM_013518151 XP_013373605 MODEL 10366248 protein-coding LOC106149515 uncharacterized LOC106149515 NW_004955448 9289440 9326979 + 106149515 AGCD01041467;AGCD01041468;AGCD01041469;GBDK01025761;XM_013518588 XP_013374042 MODEL 8740141 pseudo LOC102020178 T-complex protein 1 subunit alpha pseudogene NW_004955449 259525 261023 + 102020178 AGCD01041762 MODEL 10165592 ncrna LOC106148850 uncharacterized LOC106148850 NW_004955404 814564 823257 + 106148850 AGCD01003211;AGCD01003212;GBDJ01320461;XR_001234562 MODEL 626189216 mirna MIR9-2 microRNA 9-2 9011623 pseudo LOC102004784 40S ribosomal protein S8 pseudogene NW_004955457 6388635 6389329 - 102004784 AGCD01046838 MODEL 9008890 protein-coding LOC102016440 uncharacterized protein C1orf198-like NW_004956284 273 5382 - 102016440 AGCD01079373;GBCQ01042040;GBDI01083284;XM_005415190 XP_005415247 MODEL 8880750 protein-coding Dgcr6l DiGeorge syndrome critical region gene 6 like ASSOCIATED WITH prostate cancer (ortholog) NW_004955442 17810570 17815905 + 102020386 AGCD01037986;GBDF01004537;XM_005391720 XP_005391777 MODEL 8813277 protein-coding Neu3 neuraminidase 3 ENCODES a protein that exhibits alpha-sialidase activity (ortholog); exo-alpha-sialidase activity (ortholog); INVOLVED IN carbohydrate metabolic process (ortholog); ganglioside catabolic process (ortholog); negative regulation of clathrin-dependent endocytosis (ortholog); PARTICIPATES IN Fabry disease pathway; Gaucher's disease pathway; Krabbe disease pathway; ASSOCIATED WITH Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN early endosome membrane (ortholog); external side of plasma membrane (ortholog); lysosomal membrane (ortholog) NW_004955414 16783996 16798368 - 102030180 AGCD01015225;GBCE01052428;XM_005379900;XM_005379901;XM_005379902;XM_005379903;XM_005379904;XM_005379905;XM_013512071 XP_005379957;XP_005379958;XP_005379959;XP_005379960;XP_005379961;XP_005379962;XP_013367525 MODEL 8788053 protein-coding LOC102022349 collagen alpha-1(I) chain-like NW_004955451 13935187 13936367 + 102022349 AGCD01043514;GBDK01343386;XM_005394291 XP_005394348 MODEL 10245494 protein-coding LOC106149641 uncharacterized LOC106149641 NW_004955451 16323789 16324814 - 106149641 AGCD01043670;GBCE01169732;XM_013519140 XP_013374594 MODEL 10359868 ncrna LOC106147368 uncharacterized LOC106147368 NW_004955547 1628639 1630325 - 106147368 AGCD01072234;GBCQ01046862;XR_001232224 MODEL 8963459 protein-coding Golga7 golgin A7 INVOLVED IN Golgi to plasma membrane protein transport (ortholog); Golgi to plasma membrane transport (ortholog); post-translational protein modification (ortholog); FOUND IN Golgi membrane (ortholog); Golgi stack (ortholog); palmitoyltransferase complex (ortholog) NW_004955536 1386760 1408628 - 102014394 AGCD01070756;GBDF01082272;XM_005410528 XP_005410585 MODEL 8835204 protein-coding Efnb3 ephrin B3 ENCODES a protein that exhibits ephrin receptor binding (ortholog); INVOLVED IN adult walking behavior (ortholog); axon choice point recognition (ortholog); axon guidance (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; ASSOCIATED WITH movement disease (ortholog); FOUND IN glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog); plasma membrane (ortholog) NW_004955467 9217796 9225223 - 102006325 AGCD01051484;GBBH01129008;XM_005399466;XM_005399467 XP_005399523;XP_005399524 MODEL 8869105 pseudo LOC102022694 glyceraldehyde-3-phosphate dehydrogenase-like NW_004955415 31723190 31724087 + 102022694 AGCD01016692;XR_260340 MODEL 39132969 snrna U1 U1 spliceosomal RNA 8837995 protein-coding Gpr84 G protein-coupled receptor 84 FOUND IN plasma membrane (ortholog); signaling receptor complex (ortholog) NW_004955458 1602241 1604492 - 102005900 AGCD01047193;GBCE01172963;XM_005397219 XP_005397276 MODEL 9000039 ncrna LOC102005117 uncharacterized LOC102005117 NW_004955460 7231987 7232762 - 102005117 AGCD01048479;GBDF01013953;XR_001236514;XR_263035 MODEL 8746033 protein-coding LOC102004077 protein transport protein Sec61 subunit beta-like NW_004955491 6427300 6427659 + 102004077 AGCD01060529;XM_013504569 XP_013360023 MODEL 9027570 protein-coding Gcgr glucagon receptor ENCODES a protein that exhibits glucagon receptor activity (ortholog); peptide hormone binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); cellular response to glucagon stimulus (ortholog); PARTICIPATES IN G protein mediated signaling pathway via Galphas family; glucagon signaling pathway; ASSOCIATED WITH ACTH-independent macronodular adrenal hyperplasia 1 (ortholog); Mahvash disease (ortholog); maturity-onset diabetes of the young type 1 (ortholog); FOUND IN endosome (ortholog); plasma membrane (ortholog) NW_004955506 1340410 1348028 - 102027766 AGCD01065257;GBDK01432119;XM_013506127;XM_013506128;XM_013506129;XM_013506131;XM_013506132;XM_013506133;XM_013506134;XM_013506135;XM_013506136;XM_013506137 XP_013361581;XP_013361582;XP_013361583;XP_013361585;XP_013361586;XP_013361587;XP_013361588;XP_013361589;XP_013361590;XP_013361591 MODEL 8928832 protein-coding LOC102023064 asparagine synthetase [glutamine-hydrolyzing] NW_004955432 14084222 14107610 - 102023064 AGCD01031036;GBBH01144818;GBCC01041400;XM_005388086 XP_005388143 MODEL 9011007 protein-coding Nubpl NUBP iron-sulfur cluster assembly factor, mitochondrial ENCODES a protein that exhibits 4 iron, 4 sulfur cluster binding (ortholog); INVOLVED IN mitochondrial respiratory chain complex I assembly (ortholog); mitochondrion organization (ortholog); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; ASSOCIATED WITH genetic disease (ortholog); mitochondrial complex I deficiency (ortholog); mitochondrial metabolism disease (ortholog); FOUND IN mitochondrion (ortholog) NW_004955409 28873609 29073196 - 102009918 AGCD01010246;AGCD01010247;AGCD01010248;AGCD01010249;AGCD01010250;AGCD01010251;AGCD01010252;AGCD01010253;GBDF01144891;XM_005376951;XM_005376952;XM_005376953;XM_005376954;XM_013510457 XP_005377008;XP_005377009;XP_005377010;XP_005377011;XP_013365911 MODEL 9023470 protein-coding Lyrm4 LYR motif containing 4 ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein homodimerization activity (ortholog); structural molecule activity (ortholog); INVOLVED IN [2Fe-2S] cluster assembly (ortholog); [4Fe-4S] cluster assembly (ortholog); PARTICIPATES IN mitochondrial iron-sulfur cluster protein biogenesis pathway; ASSOCIATED WITH combined oxidative phosphorylation deficiency 19 (ortholog); FOUND IN mitochondrial [2Fe-2S] assembly complex (ortholog); mitochondrion (ortholog); nuclear body (ortholog) NW_004955465 8346012 8470251 + 102008832 AGCD01050473;AGCD01050474;GBCE01065182;GBDJ01354215;XM_005398879 XP_005398936 MODEL 10364396 protein-coding LOC106147484 collagen alpha-1(I) chain-like NW_004955567 744459 745214 + 106147484 AGCD01074429;GBBH01210980;XM_013509303 XP_013364757 MODEL 8814832 protein-coding Nploc4 NPL4 homolog, ubiquitin recognition factor ENCODES a protein that exhibits ATPase binding (ortholog); K48-linked polyubiquitin modification-dependent protein binding (ortholog); K63-linked polyubiquitin modification-dependent protein binding (ortholog); INVOLVED IN ERAD pathway (ortholog); Golgi organization (ortholog); negative regulation of RIG-I signaling pathway (ortholog); FOUND IN nucleoplasm (ortholog); UFD1-NPL4 complex (ortholog); VCP-NPL4-UFD1 AAA ATPase complex (ortholog) NW_004955506 1451337 1513455 + 102003675 AGCD01065265;AGCD01065266;AGCD01065267;AGCD01065268;AGCD01065269;GBDF01006018;XM_005407271 XP_005407328 MODEL 10250031 ncrna LOC106147777 uncharacterized LOC106147777 NW_004955410 10663384 10669735 - 106147777 AGCD01010796;GBDF01307607;XR_001232729 MODEL 8942136 protein-coding Cuedc1 CUE domain containing 1 NW_004955451 5054633 5124318 + 102005764 AGCD01043162;AGCD01043163;GBCB01001214;XM_005394044;XM_005394045;XM_005394046 XP_005394101;XP_005394102;XP_005394103 MODEL 8733993 protein-coding LOC102029634 MAP6 domain-containing protein 1 NW_004955420 23587480 23589224 + 102029634 AGCD01021249;GBDF01251732;GBDJ01315739;XM_005383358 XP_005383415 MODEL 8733200 pseudo LOC102024755 ribosomal L1 domain-containing protein 1 pseudogene NW_004955405 20401414 20402711 - 102024755 AGCD01005055 MODEL 8811386 pseudo LOC102017192 60S ribosomal protein L5 pseudogene NW_004955406 29987004 29987892 - 102017192 AGCD01006355 MODEL 8884637 protein-coding Il15ra interleukin 15 receptor subunit alpha ENCODES a protein that exhibits interleukin-15 receptor activity (ortholog); protein kinase binding (ortholog); INVOLVED IN cell surface receptor signaling pathway via JAK-STAT (ortholog); interleukin-15-mediated signaling pathway (ortholog); negative regulation of neuron projection development (ortholog); PARTICIPATES IN Jak-Stat signaling pathway; ASSOCIATED WITH hepatocellular carcinoma (ortholog); Human Influenza (ortholog); Pneumococcal Pneumonia (ortholog); FOUND IN cell surface (ortholog); cytoplasmic vesicle (ortholog); interleukin-15 receptor complex (ortholog) NW_004955421 22590168 22612835 - 102009192 AGCD01022140;AGCD01022141;GBDJ01025096;XM_013513670;XM_013513671;XM_013513672 XP_013369124;XP_013369125;XP_013369126 MODEL 9050234 protein-coding Lrrc53 leucine rich repeat containing 53 NW_004955423 18141159 18204497 + 102030440 AGCD01023866;XM_013514452 XP_013369906 MODEL 10131609 ncrna LOC106150330 uncharacterized LOC106150330 NW_004955472 12098041 12114855 - 106150330 AGCD01053782;AGCD01053783;AGCD01053784;GBDK01422278;XR_001237074 MODEL 39134311 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 8802871 protein-coding Rpl39 ribosomal protein L39 ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); cytoplasmic translation (ortholog); innate immune response in mucosa (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; FOUND IN cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog) NW_004955534 200591 203827 + 102008660 AGCD01070441;GBDK01010441;XM_005410433 XP_005410490 MODEL 8865865 pseudo LOC102017195 thioredoxin pseudogene NW_004955407 36693641 36693876 - 102017195 AGCD01007774 MODEL 10301454 ncrna LOC106149368 uncharacterized LOC106149368 NW_004955444 6519653 6524409 + 106149368 AGCD01038870;GBDF01307561;XR_001235506 MODEL 10269097 pseudo LOC106149516 uncharacterized LOC106149516 NW_004955448 11855465 11914074 - 106149516 AGCD01041533;AGCD01041534;AGCD01041535;AGCD01041536 MODEL 8856931 protein-coding Caprin2 caprin family member 2 ENCODES a protein that exhibits signaling receptor binding (ortholog); INVOLVED IN negative regulation of cell growth (ortholog); positive regulation of canonical Wnt signaling pathway (ortholog); positive regulation of dendrite morphogenesis (ortholog); ASSOCIATED WITH Peters anomaly (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955505 4431921 4477434 + 102012880 AGCD01065113;AGCD01065114;GBBH01155285;GBDF01011219;XM_013505958 XP_013361412 MODEL 10356923 protein-coding LOC106146810 uncharacterized LOC106146810 NW_004955496 1713351 1725337 - 106146810 AGCD01062259;GBCE01043950;XM_013505372 XP_013360826 MODEL 39132450 snrna U6 U6 spliceosomal RNA 8880648 protein-coding LOC102013057 interferon-inducible GTPase 1-like NW_004955408 2302552 2307297 - 102013057 AGCD01008003;GBDJ01001366;XM_013507347 XP_013362801 MODEL 8943198 pseudo LOC102004786 mitochondrial pyruvate carrier 2 pseudogene NW_004955408 33338349 33338731 + 102004786 AGCD01008867 MODEL 8791905 ncrna LOC102013469 uncharacterized LOC102013469 NW_004955405 26349233 26375138 + 102013469 AGCD01005201;GBDK01414416;XR_259396 MODEL 10240847 ncrna LOC106149103 uncharacterized LOC106149103 NW_004955437 9101395 9104171 - 106149103 AGCD01034516;GBDF01279955;XR_001235066 MODEL 10237290 ncrna LOC106150188 uncharacterized LOC106150188 NW_004955467 10612688 10613748 - 106150188 AGCD01051578;GBDF01114578;XR_001236850 MODEL 8792066 pseudo LOC102016797 60S ribosomal protein L27 pseudogene NW_004955468 1356384 1356790 + 102016797 AGCD01051766 MODEL 10079127 ncrna LOC106149779 uncharacterized LOC106149779 NW_004955453 163726 166939 + 106149779 AGCD01044585;GBBH01195282;XR_001236154;XR_001236155 MODEL 10229363 ncrna LOC106148303 uncharacterized LOC106148303 NW_004955419 27504127 27505218 + 106148303 AGCD01020440;XR_001233619 MODEL 9012778 protein-coding Synrg synergin gamma ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN clathrin coat of trans-Golgi network vesicle (ortholog); cytoplasm (ortholog) NW_004955451 439205 510675 + 102020866 AGCD01042936;GBDF01004942;GBDF01016714;XM_005393912;XM_005393914;XM_005393915;XM_005393917;XM_005393919;XM_005393920;XM_005393921;XM_005393922;XM_013519166;XM_013519167;XM_013519168 XP_005393969;XP_005393971;XP_005393972;XP_005393974;XP_005393976;XP_005393977;XP_005393978;XP_005393979;XP_013374620;XP_013374621;XP_013374622 MODEL 8804596 protein-coding LOC102024757 cytochrome P450 11B1, mitochondrial-like NW_004955454 1700541 1707716 + 102024757 AGCD01044978;GBDF01252880;XM_013520063 XP_013375517 MODEL 8789124 protein-coding Hdac3 histone deacetylase 3 ENCODES a protein that exhibits chromatin binding (ortholog); chromatin DNA binding (ortholog); cyclin binding (ortholog); INVOLVED IN cellular response to fluid shear stress (ortholog); cellular response to mechanical stimulus (ortholog); cellular response to parathyroid hormone stimulus (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute kidney failure (ortholog); adenocarcinoma (ortholog); Anaphylaxis (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955415 12138520 12154234 + 102004802 AGCD01016185;GBDF01049421;XM_005380723;XM_005380724;XM_005380725 XP_005380780;XP_005380781;XP_005380782 MODEL 10138686 ncrna LOC106149642 uncharacterized LOC106149642 NW_004955451 16362949 16364739 + 106149642 AGCD01043673;XR_001235949 MODEL 8858843 ncrna LOC102020911 uncharacterized LOC102020911 NW_004955416 30982459 31051244 - 102020911 AGCD01017714;AGCD01017715;AGCD01017716;AGCD01017717;AGCD01017718;AGCD01017719;AGCD01017720;AGCD01017721;AGCD01017722;AGCD01017723;AGCD01017724;GBDF01068906;XR_260441 MODEL 8742292 protein-coding Vash2 vasohibin 2 ENCODES a protein that exhibits actin binding (ortholog); metallocarboxypeptidase activity (ortholog); microtubule binding (ortholog); INVOLVED IN axon development (ortholog); cell-cell fusion (ortholog); labyrinthine layer blood vessel development (ortholog); ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extracellular region (ortholog) NW_004955406 4607924 4639949 - 102016884 AGCD01005699;GBDI01357575;XM_005374734 XP_005374791 MODEL 8885404 pseudo LOC102005120 centromere protein H pseudogene NW_004955462 13884190 13890236 - 102005120 AGCD01049434 MODEL 9038231 protein-coding Efr3a EFR3 homolog A INVOLVED IN protein localization to plasma membrane (ortholog); synaptic vesicle priming (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955461 6588178 6687499 + 102010676 AGCD01048910;AGCD01048911;GBCQ01067382;XM_005398007;XM_005398008;XM_005398009;XM_005398010;XM_005398011 XP_005398064;XP_005398065;XP_005398066;XP_005398067;XP_005398068 MODEL 8933930 ncrna LOC102004078 uncharacterized LOC102004078 NW_004955422 13779712 13782349 - 102004078 AGCD01022838;GBDI01019729;XR_260873 MODEL 10143964 protein-coding LOC106148851 pulmonary surfactant-associated protein D-like NW_004955404 914840 915535 + 106148851 AGCD01003215;GBDF01276054;XM_013515675 XP_013371129 MODEL 8730328 protein-coding LOC102020180 laminin subunit alpha-3-like NW_004955402 11841530 11911794 + 102020180 AGCD01000314;AGCD01000315;AGCD01000316;AGCD01000317;AGCD01000318;AGCD01000319;AGCD01000320;AGCD01000321;AGCD01000322;GBDK01270984;XM_013505348 XP_013360802 MODEL 9017096 protein-coding Gpr85 G protein-coupled receptor 85 FOUND IN endoplasmic reticulum (ortholog); plasma membrane (ortholog) NW_004955432 19260909 19265744 - 102006702 AGCD01031176;GBDI01105800;XM_005388109;XM_013516083;XM_013516084 XP_005388166;XP_013371537;XP_013371538 MODEL 626189189 mirna MIR9-3 microRNA 9-3 8776719 protein-coding LOC102022000 uncharacterized LOC102022000 NW_004955429 15258958 15261931 - 102022000 AGCD01028800;GBCQ01069001;XM_005387257 XP_005387314 MODEL 10200901 protein-coding LOC106147633 collagen alpha-2(I) chain-like NW_004955409 12818563 12819334 - 106147633 AGCD01009568;GBDF01067754;XM_013510087 XP_013365541 MODEL 8829083 pseudo LOC102023072 leucine-rich repeat transmembrane protein FLRT1-like NW_004955436 799748 800600 + 102023072 AGCD01033559 MODEL 8935375 protein-coding Rnf167 ring finger protein 167 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to leucine starvation (ortholog); lysosome localization (ortholog); negative regulation of cell cycle (ortholog); ASSOCIATED WITH systemic primary carnitine deficiency disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); endolysosome membrane (ortholog) NW_004955467 10352650 10357214 + 102018910 AGCD01051561;GBDF01052138;XM_005399611;XM_005399612 XP_005399668;XP_005399669 MODEL 10282773 protein-coding LOC106147485 uncharacterized LOC106147485 NW_004955567 428690 441840 - 106147485 AGCD01074404;GBDK01233099;XM_013509305;XM_013509306;XM_013509307 XP_013364759;XP_013364760;XP_013364761 MODEL 8753734 protein-coding Ttc17 tetratricopeptide repeat domain 17 INVOLVED IN actin filament polymerization (ortholog); cilium organization (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); plasma membrane (ortholog) NW_004955422 4019755 4119522 - 102026014 AGCD01022532;AGCD01022533;GBBH01188438;XM_005384085;XM_005384087;XM_013514117;XM_013514118;XM_013514119;XM_013514120;XM_013514121;XM_013514122 XP_005384142;XP_005384144;XP_013369571;XP_013369572;XP_013369573;XP_013369574;XP_013369575;XP_013369576 MODEL 8949213 pseudo LOC102029637 ribose-phosphate pyrophosphokinase 1-like NW_004955490 9132265 9136631 - 102029637 AGCD01060306 MODEL 8955464 protein-coding Npm1 nucleophosmin 1 ENCODES a protein that exhibits ATP binding (ortholog); core promoter sequence-specific DNA binding (ortholog); DNA binding (ortholog); INVOLVED IN canonical NF-kappaB signal transduction (ortholog); cardiac muscle hypertrophy (ortholog); cell volume homeostasis (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; ASSOCIATED WITH Acute Erythroleukemia (ortholog); acute myeloid leukemia (ortholog); acute promyelocytic leukemia (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955408 24151070 24218783 + 102024310 AGCD01008596;AGCD01008597;AGCD01008598;AGCD01008599;AGCD01008600;AGCD01008601;AGCD01008602;AGCD01008603;AGCD01008604;GBCQ01009465;GBDF01008529;XM_013509269 XP_013364723 MODEL 10349371 ncrna LOC106147369 uncharacterized LOC106147369 NW_004955547 2426784 2436827 - 106147369 AGCD01072280;GBCB01035729;XR_001232225 MODEL 8820497 protein-coding Tmem191c transmembrane protein 191C NW_004955442 17145361 17149050 + 102015898 AGCD01037940;AGCD01037941;GBDF01054101;GBDJ01117949;XM_013518005 XP_013373459 MODEL 10108918 ncrna LOC106149780 uncharacterized LOC106149780 NW_004955405 15065628 15066503 - 106149780 AGCD01004937;XR_001236156 MODEL 10341578 pseudo LOC106148440 RNA-binding protein 7 pseudogene NW_004955422 18629329 18630128 + 106148440 AGCD01022955 MODEL 8846111 protein-coding Gch1 GTP cyclohydrolase 1 ENCODES a protein that exhibits calcium ion binding (ortholog); GTP binding (ortholog); GTP cyclohydrolase I activity (ortholog); INVOLVED IN dihydrobiopterin metabolic process (ortholog); dopamine biosynthetic process (ortholog); negative regulation of blood pressure (ortholog); PARTICIPATES IN dopa responsive dystonia pathway; Segawa syndrome pathway; ASSOCIATED WITH Acute Coronary Syndrome (ortholog); autosomal recessive Segawa syndrome (ortholog); BH4-deficient hyperphenylalaninemia A (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic vesicle (ortholog); cytosol (ortholog) NW_004955409 8624225 8670436 + 102029271 AGCD01009423;GBDF01115282;XM_005376759 XP_005376816 MODEL 8815291 protein-coding Il16 interleukin 16 ENCODES a protein that exhibits CD4 receptor binding (ortholog); cytokine activity (ortholog); INVOLVED IN induction of positive chemotaxis (ortholog); leukocyte chemotaxis (ortholog); positive regulation of inflammatory response (ortholog); ASSOCIATED WITH allergic disease (ortholog); asthma (ortholog); borna disease (ortholog); FOUND IN cytosol (ortholog); nuclear speck (ortholog) NW_004955416 11876317 11987548 + 102023029 AGCD01017193;AGCD01017194;AGCD01017195;AGCD01017196;GBDI01361041;XM_005381442;XM_005381443;XM_005381444;XM_005381449 XP_005381499;XP_005381500;XP_005381501;XP_005381506 MODEL 8816574 protein-coding Rpl3l ribosomal protein L3 like ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN negative regulation of myotube differentiation (ortholog); regulation of striated muscle tissue development (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); cardiomyopathy (ortholog); dilated cardiomyopathy 2D (ortholog); FOUND IN cytosolic large ribosomal subunit (ortholog) NW_004955442 15311336 15322578 + 102012134 AGCD01037865;AGCD01037866;GBDF01082506;XM_005391489;XM_005391490 XP_005391546;XP_005391547 MODEL 8838773 protein-coding Nucb1 nucleobindin 1 ENCODES a protein that exhibits calcium ion binding (ortholog); G-protein alpha-subunit binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN regulation of protein targeting (ortholog); small GTPase-mediated signal transduction (ortholog); ASSOCIATED WITH Stevens-Johnson syndrome (ortholog); FOUND IN cytoplasm (ortholog); early endosome (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955559 1723986 1739776 - 102029016 AGCD01073664;GBBH01003972;XM_005412925;XM_013509036 XP_005412982;XP_013364490 MODEL 8862530 protein-coding Lyrm7 LYR motif containing 7 INVOLVED IN cellular respiration (ortholog); mitochondrial respiratory chain complex III assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); mitochondrial complex III deficiency nuclear type 1 (ortholog); mitochondrial complex III deficiency nuclear type 8 (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrial membrane (ortholog); mitochondrion (ortholog) NW_004955408 2684390 2707400 + 102019669 AGCD01008024;AGCD01008025;AGCD01008026;GBDF01223284;XM_005376068 XP_005376125 MODEL 8737418 protein-coding LOC102020183 leukocyte immunoglobulin-like receptor subfamily B member 1 NW_004955604 22736 25050 + 102020183 AGCD01076859;GBBH01115395;GBCE01054578;XM_005414876 XP_005414933 MODEL 10364023 pseudo LOC106146811 leucine-rich repeat-containing protein 37A-like NW_004955496 2581428 2590629 + 106146811 AGCD01062270 MODEL 10244361 ncrna LOC106147778 uncharacterized LOC106147778 NW_004955410 12568112 12692994 - 106147778 AGCD01010860;AGCD01010861;AGCD01010862;AGCD01010863;GBCE01036772;XR_001232730;XR_001232731 MODEL 8933040 protein-coding Neu4 neuraminidase 4 ENCODES a protein that exhibits exo-alpha-sialidase activity (ortholog); INVOLVED IN ganglioside catabolic process (ortholog); glycoprotein catabolic process (ortholog); negative regulation of neuron projection development (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); lysosomal lumen (ortholog); lysosome (ortholog) NW_004955542 66214 70456 - 102029446 AGCD01071456;GBDJ01418140;XM_005411104 XP_005411161 MODEL 8768235 protein-coding LOC102005121 cysteine-rich secretory protein 3-like NW_004955411 8128236 8151585 + 102005121 AGCD01011719;GBBH01140337;XM_005377667 XP_005377724 MODEL 8988830 protein-coding Efr3b EFR3 homolog B INVOLVED IN phosphatidylinositol phosphate biosynthetic process (ortholog); protein localization to plasma membrane (ortholog); social behavior (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955469 7159087 7215234 + 102029498 AGCD01052411;GBCB01076312;XM_005400569 XP_005400626 MODEL 8980265 ncrna LOC102022351 uncharacterized LOC102022351 NW_004955404 2603157 2612436 + 102022351 AGCD01003263;GBDK01427892;XR_001234596;XR_001234598;XR_001234599;XR_001234600;XR_001234602;XR_001234603;XR_001234604;XR_001234605;XR_001234606;XR_001234607;XR_001234608 MODEL 8858720 protein-coding Cuedc2 CUE domain containing 2 INVOLVED IN intrinsic apoptotic signaling pathway in response to oxidative stress (ortholog); negative regulation of cytokine production involved in inflammatory response (ortholog); negative regulation of macrophage cytokine production (ortholog); FOUND IN cytosol (ortholog); nuclear membrane (ortholog); nucleoplasm (ortholog) NW_004955485 7969389 7977073 + 102016480 AGCD01058684;GBDF01047348;XM_005403837;XM_005403838;XM_005403839;XM_005403840 XP_005403894;XP_005403895;XP_005403896;XP_005403897 MODEL 9034945 pseudo LOC102023075 casein kinase II subunit alpha pseudogene NW_004955536 314150 315348 - 102023075 AGCD01070724 MODEL 39132971 snrna U1 U1 spliceosomal RNA 8975013 ncrna LOC102022697 uncharacterized LOC102022697 NW_004955416 22742238 22782976 - 102022697 AGCD01017535;AGCD01017536;GBDF01075292;XR_260411 MODEL 8835632 pseudo LOC102016799 membrane magnesium transporter 1 pseudogene NW_004955470 580469 581668 - 102016799 AGCD01052615;XM_005400575 MODEL 10373046 ncrna LOC106148304 uncharacterized LOC106148304 NW_004955419 6491861 6501291 - 106148304 AGCD01019859;XR_001233620;XR_001233621;XR_001233622;XR_001233623 MODEL 10297477 ncrna LOC106150331 uncharacterized LOC106150331 NW_004955472 2263418 2269139 + 106150331 AGCD01053450;GBBH01162786;XR_001237076;XR_001237077 MODEL 8768375 protein-coding Syp synaptophysin ENCODES a protein that exhibits cholesterol binding (ortholog); identical protein binding (ortholog); protein carrier activity (ortholog); INVOLVED IN endocytosis (ortholog); modulation of chemical synaptic transmission (ortholog); protein homooligomerization (ortholog); ASSOCIATED WITH cochlear disease; alcohol use disorder (ortholog); Alzheimer's disease (ortholog); FOUND IN basal part of cell; vestibular calyx terminal; excitatory synapse (ortholog) NW_004955543 675294 689579 - 102010632 AGCD01071598;AGCD01071599;GBDJ01316040;XM_005411331 XP_005411388 MODEL 10299392 protein-coding LOC106149643 uncharacterized LOC106149643 NW_004955451 16435939 16441810 - 106149643 AGCD01043676;GBCB01062546;XM_013519143;XR_001235950;XR_001235951 XP_013374597 MODEL 8930133 protein-coding Lrrc55 leucine rich repeat containing 55 ENCODES a protein that exhibits potassium channel activator activity (ortholog); transmembrane transporter binding (ortholog); voltage-gated potassium channel activity (ortholog); INVOLVED IN positive regulation of voltage-gated potassium channel activity (ortholog); potassium ion transmembrane transport (ortholog); FOUND IN voltage-gated potassium channel complex (ortholog) NW_004955511 2278638 2287435 + 102014384 AGCD01066396;GBDF01113350;XM_013506516 XP_013361970 MODEL 9058021 ncrna LOC102016447 uncharacterized LOC102016447 NW_004955407 25449838 25458467 - 102016447 AGCD01007510;GBDF01226215;XR_001231470;XR_259581;XR_259583 MODEL 10211053 ncrna LOC106149369 uncharacterized LOC106149369 NW_004955444 6447761 6452698 - 106149369 AGCD01038866;AGCD01038867;GBDF01306621;XR_001235507 MODEL 10068117 ncrna LOC106149781 uncharacterized LOC106149781 NW_004955453 14004719 14006737 - 106149781 AGCD01044856;GBCQ01178188;XR_001236157 MODEL 8848473 protein-coding Caps calcyphosine INVOLVED IN negative regulation of extrinsic apoptotic signaling pathway via death domain receptors (ortholog); FOUND IN cytosol (ortholog); external side of plasma membrane (ortholog) NW_004955495 3549455 3550965 - 102019612 AGCD01061862;GBCE01003994;XM_005405741 XP_005405798 MODEL 8772816 protein-coding Dgcr8 DGCR8 microprocessor complex subunit ENCODES a protein that exhibits double-stranded RNA binding (ortholog); heme binding (ortholog); identical protein binding (ortholog); INVOLVED IN DNA damage response (ortholog); positive regulation of pre-miRNA processing (ortholog); primary miRNA processing (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH alcohol dependence (ortholog); autism spectrum disorder (ortholog); DiGeorge syndrome (ortholog); FOUND IN cytoplasm (ortholog); glutamatergic synapse (ortholog); microprocessor complex (ortholog) NW_004955442 17998565 18034247 - 102025296 AGCD01037991;AGCD01037992;AGCD01037993;AGCD01037994;GBCE01023470;XM_005391742;XM_013517769 XP_005391799;XP_013373223 MODEL 8889828 protein-coding LOC102013060 chromosome-associated kinesin KIF4A-like NW_004955409 19322565 19326894 - 102013060 AGCD01009867;GBDF01046103;XM_005376878 XP_005376935 MODEL 10214995 pseudo LOC106149104 elongation factor 1-alpha 1 pseudogene NW_004955437 22045892 22046711 - 106149104 AGCD01034927 MODEL 8782271 ncrna LOC102020185 uncharacterized LOC102020185 NW_004955403 16028869 16105664 - 102020185 AGCD01002056;AGCD01002057;AGCD01002058;GBDI01162203;XR_001233327;XR_001233329 MODEL 9024744 protein-coding Golga7b golgin A7 family member B ENCODES a protein that exhibits enzyme binding (ortholog); FOUND IN plasma membrane (ortholog) NW_004955507 3900093 3912175 + 102009088 AGCD01065639;GBCB01074511;XM_013506239;XM_013506240;XM_013506241;XM_013506242 XP_013361693;XP_013361694;XP_013361695;XP_013361696 MODEL 9060796 protein-coding Rnf168 ring finger protein 168 ENCODES a protein that exhibits chromatin binding (ortholog); histone binding (ortholog); histone H2AK15 ubiquitin ligase activity (ortholog); INVOLVED IN cellular response to UV (ortholog); DNA damage response (ortholog); DNA repair-dependent chromatin remodeling (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; ASSOCIATED WITH Disease Progression (ortholog); genetic disease (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN DNA repair complex (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955420 12656815 12676836 - 102012653 AGCD01020881;AGCD01020882;AGCD01020883;AGCD01020884;GBBH01126409;GBCE01023807;XM_013513503 XP_013368957 MODEL 8855730 ncrna LOC102024761 uncharacterized LOC102024761 NW_004955407 5348784 5427121 + 102024761 AGCD01006913;AGCD01006914;GBBH01027179;XR_001230977;XR_001230981;XR_001230983;XR_259551 MODEL 39134312 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 10312308 ncrna LOC106147370 uncharacterized LOC106147370 NW_004955547 2459406 2470898 + 106147370 AGCD01072281;AGCD01072282;GBCB01056621;XR_001232228 MODEL 8756426 protein-coding LOC102020914 complement C5-like NW_004955419 6953649 6990113 + 102020914 AGCD01019867;GBDI01318814;XM_005382579;XM_013513188 XP_005382636;XP_013368642 MODEL 8710624 protein-coding Ttc19 tetratricopeptide repeat domain 19 INVOLVED IN mitochondrial respiratory chain complex III assembly (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); infertility (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955467 1381105 1405509 + 102014124 AGCD01051262;AGCD01051263;AGCD01051264;GBCE01045510;GBCQ01125396;XM_005399316 XP_005399373 MODEL 10357886 ncrna LOC106149517 uncharacterized LOC106149517 NW_004955448 8139101 8155028 - 106149517 AGCD01041437;XR_001235759;XR_001235760;XR_001235761 MODEL 8896292 ncrna LOC102004079 uncharacterized LOC102004079 NW_004955493 3577628 3582021 + 102004079 AGCD01061001;XR_264080 MODEL 39132451 snrna U6 U6 spliceosomal RNA 10292102 protein-coding LOC106148441 translation initiation factor IF-2-like NW_004955422 866576 867690 + 106148441 AGCD01022439;GBDF01289001;XM_013513826 XP_013369280 MODEL 8867857 protein-coding LOC102008067 stereocilin NW_004955409 27019957 27035448 + 102008067 AGCD01010205;GBDF01030323;XM_005376944;XM_005376945 XP_005377001;XP_005377002 MODEL 8967272 ncrna LOC102004791 uncharacterized LOC102004791 NW_004955411 1297405 1299563 + 102004791 AGCD01011476;GBDF01076094;XR_001232844;XR_259909 MODEL 151707893 mirna MIR92A1 microRNA 92a-1 10281957 ncrna LOC106147634 uncharacterized LOC106147634 NW_004955604 180221 182404 - 106147634 AGCD01076867;GBDK01228377;XR_001232565 MODEL 8859876 protein-coding Gpr87 G protein-coupled receptor 87 ENCODES a protein that exhibits G protein-coupled purinergic nucleotide receptor activity (ortholog); INVOLVED IN G protein-coupled receptor signaling pathway (ortholog) NW_004955448 2403188 2424209 - 102029457 AGCD01041282;GBDI01322143;XM_005393022;XM_005393023 XP_005393079;XP_005393080 MODEL 8737315 pseudo LOC102013471 poly(rC)-binding protein 2 pseudogene NW_004955405 1213036 1219942 - 102013471 AGCD01004598 MODEL 10352429 ncrna LOC106150189 uncharacterized LOC106150189 NW_004955467 9889777 9892373 - 106150189 AGCD01051535;GBDI01034143;XR_001236853 MODEL 10345860 ncrna LOC106147487 uncharacterized LOC106147487 NW_004955567 817228 820682 + 106147487 AGCD01074433;AGCD01074434;GBDF01016436;XR_001232414;XR_001232415;XR_001232416;XR_001232417 MODEL 8833496 protein-coding LOC102029640 putative olfactory receptor 4A4 NW_004955422 128417 132126 - 102029640 AGCD01022394;XM_005384930 XP_005384987 MODEL 8856017 protein-coding Nucb2 nucleobindin 2 ENCODES a protein that exhibits calcium ion binding (ortholog); G-protein alpha-subunit binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN insulin metabolic process (ortholog); negative regulation of appetite (ortholog); negative regulation of cAMP/PKA signal transduction (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); obesity (ortholog); Prostatic Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog) NW_004955414 32062870 32104117 + 102008307 AGCD01015769;AGCD01015770;AGCD01015771;AGCD01015772;AGCD01015773;GBDI01067335;XM_005380377;XM_005380378;XM_013512085 XP_005380434;XP_005380435;XP_013367539 MODEL 8710393 protein-coding LOC102005126 olfactory receptor 149-like NW_004955412 25061204 25062136 + 102005126 AGCD01013133;XM_005378414 XP_005378471 MODEL 8977051 protein-coding LOC102017197 carbonyl reductase [NADPH] 1-like NW_004955407 35239477 35254421 + 102017197 AGCD01007733;AGCD01007734;GBCQ01007846;GBDF01041818;XM_013504561 XP_013360015 MODEL 9009133 protein-coding Hdac4 histone deacetylase 4 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); cellular response to parathyroid hormone stimulus (ortholog); cellular response to tumor necrosis factor (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; histone modification pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); amyotrophic lateral sclerosis (ortholog); aortic aneurysm (ortholog); FOUND IN A band (ortholog); actomyosin (ortholog); chromatin (ortholog) NW_004955542 1629691 1886160 + 102021917 AGCD01071506;AGCD01071507;GBCE01162161;XM_005411176;XM_005411177;XM_005411178;XM_013508107;XM_013508108;XM_013508109;XM_013508110;XM_013508111;XM_013508112;XM_013508113;XM_013508114 XP_005411233;XP_005411234;XP_005411235;XP_013363561;XP_013363562;XP_013363563;XP_013363564;XP_013363565;XP_013363566;XP_013363567;XP_013363568 MODEL 8735481 protein-coding Npm2 nucleophosmin/nucleoplasmin 2 ENCODES a protein that exhibits chromatin binding (ortholog); enzyme binding (ortholog); identical protein binding (ortholog); INVOLVED IN blastocyst development (ortholog); chromatin remodeling (ortholog); oocyte differentiation (ortholog); FOUND IN chromatin (ortholog); nucleus (ortholog) NW_004955403 45517426 45539216 + 102029691 AGCD01002818;AGCD01002819;AGCD01002820;GBDF01013917;XM_005373643;XM_013513680;XM_013513692;XM_013513695;XM_013513700 XP_005373700;XP_013369134;XP_013369146;XP_013369149;XP_013369154 MODEL 8724998 pseudo LOC102023080 60S ribosomal protein L13 pseudogene NW_004955443 19809334 19809985 - 102023080 AGCD01038635 MODEL 8746723 protein-coding Cul1 cullin 1 ENCODES a protein that exhibits ubiquitin ligase complex scaffold activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN animal organ morphogenesis (ortholog); apoptotic process (ortholog); cell population proliferation (ortholog); PARTICIPATES IN neddylation pathway; Notch signaling pathway; nuclear factor kappa B signaling pathway; ASSOCIATED WITH Stevens-Johnson syndrome (ortholog); FOUND IN cullin-RING ubiquitin ligase complex (ortholog); nucleus (ortholog); Parkin-FBXW7-Cul1 ubiquitin ligase complex (ortholog) NW_004955491 4165400 4212483 + 102026875 AGCD01060419;AGCD01060420;GBDF01010811;XM_005404888 XP_005404945 MODEL 39132973 snrna U1 U1 spliceosomal RNA 9017804 pseudo LOC102022001 olfactory receptor 4A15-like NW_004955511 66830 67734 - 102022001 AGCD01066313 MODEL 8933212 protein-coding Vasn vasorin ENCODES a protein that exhibits transforming growth factor beta binding (ortholog); INVOLVED IN cellular response to hypoxia (ortholog); cellular response to redox state (ortholog); negative regulation of epithelial to mesenchymal transition (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN cell surface (ortholog); extracellular exosome (ortholog); extracellular region (ortholog) NW_004955442 13060923 13071303 - 102011481 AGCD01037757;GBCE01054527;XM_005391295 XP_005391352 MODEL 10280226 protein-coding LOC106150332 translation initiation factor IF-2-like NW_004955472 676479 677848 - 106150332 AGCD01053347;GBDF01008219;XM_013522958 XP_013378412 MODEL 8810943 protein-coding Gchfr GTP cyclohydrolase I feedback regulator ENCODES a protein that exhibits amino acid binding (ortholog); enzyme inhibitor activity (ortholog); GTP cyclohydrolase binding (ortholog); INVOLVED IN protein-containing complex assembly (ortholog); PARTICIPATES IN dopa responsive dystonia pathway; Segawa syndrome pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); dendrite (ortholog); intracellular protein-containing complex (ortholog) NW_004955416 7617333 7620455 + 102026106 AGCD01016995;GBDK01091172;XM_005381258 XP_005381315 MODEL 9061206 protein-coding Il17a interleukin 17A ENCODES a protein that exhibits cytokine activity (ortholog); protein heterodimerization activity (ortholog); protein homodimerization activity (ortholog); INVOLVED IN cellular response to glucocorticoid stimulus (ortholog); cellular response to interleukin-1 (ortholog); defense response to fungus (ortholog); PARTICIPATES IN interleukin-23 signaling pathway; interleukin-27 signaling pathway; ASSOCIATED WITH acne (ortholog); Acute Lung Injury (ortholog); acute myocardial infarction (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular region (ortholog) NW_004955411 5896435 5899911 - 102029486 AGCD01011666;GBDF01098022;XM_005377658 XP_005377715 MODEL 10227165 ncrna LOC106147779 uncharacterized LOC106147779 NW_004955410 22639838 22668495 - 106147779 AGCD01011080;AGCD01011081;XR_001232742 MODEL 8752449 protein-coding Neurl1 neuralized E3 ubiquitin protein ligase 1 ENCODES a protein that exhibits translation regulator activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN cellular response to amino acid stimulus (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of Notch signaling pathway (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); Colorectal Neoplasms (ortholog); Experimental Seizures (ortholog); FOUND IN apical dendrite (ortholog); dendritic spine (ortholog); perikaryon (ortholog) NW_004955485 7015969 7046089 - 102014139 AGCD01058631;AGCD01058632;AGCD01058633;GBCB01004044;GBDJ01140436;XM_013504075 XP_013359529 MODEL 10320445 ncrna LOC106149782 uncharacterized LOC106149782 NW_004955453 4999035 5000527 + 106149782 AGCD01044702;XR_001236158 MODEL 8727811 protein-coding Efs embryonal Fyn-associated substrate ENCODES a protein that exhibits protein domain specific binding (ortholog); SH3 domain binding (ortholog); ASSOCIATED WITH Crohn's disease (ortholog) NW_004955409 36973522 36981079 + 102021103 AGCD01010485;GBBH01207846;XM_005377079;XM_005377081 XP_005377136;XP_005377138 MODEL 8992031 protein-coding Gpr88 G protein-coupled receptor 88 ENCODES a protein that exhibits beta2-adrenergic receptor activity (ortholog); cytoskeletal motor activity (ortholog); INVOLVED IN adenylate cyclase-modulating G protein-coupled receptor signaling pathway (ortholog); G protein-coupled receptor signaling pathway (ortholog); locomotory behavior (ortholog); ASSOCIATED WITH Childhood-Onset Chorea with Psychomotor Retardation (ortholog); FOUND IN ciliary membrane (ortholog); cilium (ortholog); cytoplasm (ortholog) NW_004955435 5268746 5271237 + 102023189 AGCD01032879;AGCD01032880;GBDI01344475;XM_005389100 XP_005389157 MODEL 9039047 protein-coding Tmem192 transmembrane protein 192 ENCODES a protein that exhibits protein homodimerization activity (ortholog); FOUND IN endoplasmic reticulum (ortholog); endosome (ortholog); Golgi apparatus (ortholog) NW_004955403 40202180 40211747 + 102013040 AGCD01002671;GBDJ01224633;GBDK01230767;XM_013513506 XP_013368960 MODEL 10374606 ncrna LOC106148305 uncharacterized LOC106148305 NW_004955419 6474947 6478071 + 106148305 AGCD01019858;GBDI01374537;XR_001233624 MODEL 8787656 pseudo LOC102005128 adenylate kinase 4, mitochondrial pseudogene NW_004955412 30505705 30506289 - 102005128 AGCD01013301 MODEL 10292748 protein-coding LOC106149644 optic atrophy 3 protein homolog NW_004955451 10478716 10480344 - 106149644 AGCD01043324;GBDF01047368;GBDK01047209;XM_013519149 XP_013374603 MODEL 8717885 protein-coding LOC102016449 mucin-17 NW_004955456 16203150 16214796 - 102016449 AGCD01046694;GBDF01024236;XM_005396900 XP_005396957 MODEL 8877342 protein-coding Lrrc56 leucine rich repeat containing 56 ASSOCIATED WITH acute myeloid leukemia (ortholog); Breast Neoplasms (ortholog); Costello syndrome (ortholog) NW_004955476 11493299 11507022 - 102017010 AGCD01055460;GBBH01165706;XM_013502922 XP_013358376 MODEL 10109524 ncrna LOC106149518 uncharacterized LOC106149518 NW_004955448 1783756 1786187 - 106149518 AGCD01041268;GBDK01419199;XR_001235766 MODEL 9004333 protein-coding Rpl4 ribosomal protein L4 ENCODES a protein that exhibits 5S rRNA binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN brainstem development (ortholog); cell differentiation (ortholog); cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); High Myopia (ortholog); Sepsis (ortholog); FOUND IN A band (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955450 9170372 9175224 + 102028360 AGCD01042585;GBDF01007745;XM_005393700 XP_005393757 MODEL 10214210 ncrna LOC106146812 uncharacterized LOC106146812 NW_004955496 2180604 2210339 + 106146812 AGCD01062263;AGCD01062264;AGCD01062265;GBCE01062212;XR_001231397 MODEL 8993472 protein-coding Lyrm9 LYR motif containing 9 ASSOCIATED WITH lung small cell carcinoma (ortholog); FOUND IN mitochondrion (ortholog) NW_004955481 5113810 5118141 + 102009838 AGCD01056964;GBCE01043632;XM_005402772 XP_005402829 MODEL 39132453 snrna U6 U6 spliceosomal RNA 9002610 pseudo LOC102022352 pescadillo homolog pseudogene NW_004955404 24712579 24718093 - 102022352 AGCD01003827 MODEL 8867999 pseudo LOC102013061 cysteine-rich with EGF-like domain protein 2 pseudogene NW_004955409 26647055 26648471 + 102013061 AGCD01010196 MODEL 8714964 protein-coding Dgka diacylglycerol kinase alpha ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); kinase activity (ortholog); lipid binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); glycerolipid metabolic process (ortholog); lipid phosphorylation (ortholog); PARTICIPATES IN D-glycericacidemia pathway; familial lipoprotein lipase deficiency pathway; glycerol kinase deficiency pathway; ASSOCIATED WITH major depressive disorder (ortholog); FOUND IN cytosol (ortholog); plasma membrane (ortholog) NW_004955458 3517519 3544651 + 102024532 AGCD01047314;AGCD01047315;AGCD01047316;AGCD01047317;GBCE01166881;XM_005397269;XM_013520902;XM_013520903;XM_013520904;XM_013520905 XP_005397326;XP_013376356;XP_013376357;XP_013376358;XP_013376359 MODEL 10207253 protein-coding LOC106148852 uncharacterized LOC106148852 NW_004955430 5320096 5325197 + 106148852 AGCD01029259;GBCE01021431;XM_013515683;XR_001234566 XP_013371137 MODEL 8752586 pseudo LOC102016802 m7GpppN-mRNA hydrolase pseudogene NW_004955472 2774770 2776060 + 102016802 AGCD01053489 MODEL 9044765 protein-coding Gck glucokinase ENCODES a protein that exhibits ADP binding (ortholog); ATP binding (ortholog); D-glucose binding (ortholog); INVOLVED IN calcium ion import (ortholog); carbohydrate phosphorylation (ortholog); cellular response to glucose starvation (ortholog); PARTICIPATES IN congenital sucrase-isomaltase deficiency pathway; forkhead class A signaling pathway; galactokinase deficiency pathway; ASSOCIATED WITH Bone Marrow Failure Syndrome 2 (ortholog); Congenital Hyperinsulinism (ortholog); coronary artery disease (ortholog); FOUND IN actin filament (ortholog); basal cortex (ortholog); cell cortex (ortholog) NW_004955456 7784269 7838260 + 102021313 AGCD01046432;AGCD01046433;AGCD01046434;AGCD01046435;GBDI01283119;XM_013520657 XP_013376111 MODEL 9047737 protein-coding LOC102020186 ubiquitin carboxyl-terminal hydrolase 42-like NW_004955403 23065559 23090976 - 102020186 AGCD01002238;AGCD01002239;AGCD01002240;GBDF01016577;XM_013512884 XP_013368338 MODEL 8714356 protein-coding LOC102022699 60S ribosomal protein L39 NW_004955416 31552058 31553403 + 102022699 AGCD01017761;AGCD01017762;XM_005381677 XP_005381734 MODEL 8855358 protein-coding Nucks1 nuclear casein kinase and cyclin dependent kinase substrate 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); double-stranded DNA binding (ortholog); INVOLVED IN cellular response to X-ray (ortholog); chromatin organization (ortholog); double-strand break repair via homologous recombination (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN chromatin (ortholog); chromosome (ortholog); cytoplasm (ortholog) NW_004955406 41412855 41448551 - 102011838 AGCD01006681;AGCD01006682;AGCD01006683;AGCD01006684;GBCE01054514;XM_005375369;XM_005375370 XP_005375426;XP_005375427 MODEL 8923746 protein-coding LOC102029642 leukotriene-B4 omega-hydroxylase 3-like NW_004955495 7548144 7563016 - 102029642 AGCD01062153;GBDK01138987;XM_005406057 XP_005406114 MODEL 8937372 protein-coding Golgb1 golgin B1 INVOLVED IN chondrocyte proliferation (ortholog); protein localization to pericentriolar material (ortholog); ASSOCIATED WITH cleft palate (ortholog); osteochondrodysplasia (ortholog); FOUND IN cis-Golgi network (ortholog); endoplasmic reticulum-Golgi intermediate compartment (ortholog); Golgi apparatus (ortholog) NW_004955427 21022369 21108448 - 102004092 AGCD01027431;AGCD01027432;GBBH01089618;XM_005386495;XM_013515169;XM_013515170;XM_013515171;XM_013515172;XM_013515173;XM_013515174 XP_005386552;XP_013370623;XP_013370624;XP_013370625;XP_013370626;XP_013370627;XP_013370628 MODEL 39134314 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 8793245 protein-coding Rnf169 ring finger protein 169 ENCODES a protein that exhibits K63-linked polyubiquitin modification-dependent protein binding (ortholog); nucleosome binding (ortholog); ubiquitin-modified histone reader activity (ortholog); INVOLVED IN DNA damage response (ortholog); double-strand break repair via homologous recombination (ortholog); negative regulation of double-strand break repair (ortholog); FOUND IN chromosome (ortholog); cytosol (ortholog); nuclear body (ortholog) NW_004955414 16899101 16962690 - 102016373 AGCD01015227;AGCD01015228;AGCD01015229;AGCD01015230;AGCD01015231;GBBH01158619;GBCQ01030560;XM_013511845 XP_013367299 MODEL 10139305 ncrna LOC106147371 uncharacterized LOC106147371 NW_004955547 416785 419469 + 106147371 AGCD01072154;GBDI01090934;XR_001232229 MODEL 8920625 pseudo LOC102020915 DNA/RNA-binding protein KIN17 pseudogene NW_004955484 6621201 6622379 - 102020915 AGCD01058284 MODEL 9061137 protein-coding Ttc21a tetratricopeptide repeat domain 21A INVOLVED IN flagellated sperm motility (ortholog); spermatid development (ortholog); ASSOCIATED WITH Asthenozoospermia (ortholog); oligospermia (ortholog); spermatogenic failure 37 (ortholog) NW_004955427 24833021 24862199 - 102028112 AGCD01027524;GBDF01085603;XM_013515069;XM_013515070;XM_013515071;XM_013515072;XM_013515073;XM_013515074 XP_013370523;XP_013370524;XP_013370525;XP_013370526;XP_013370527;XP_013370528 MODEL 9063365 ncrna LOC102022002 uncharacterized LOC102022002 NW_004955430 21709076 21728235 - 102022002 AGCD01029774;AGCD01029775;XR_001234548 MODEL 10085193 protein-coding LOC106148442 brain acid soluble protein 1-like NW_004955422 6561124 6689719 + 106148442 AGCD01022602;AGCD01022603;AGCD01022604;AGCD01022605;AGCD01022606;XM_013513830 XP_013369284 MODEL 10391202 ncrna LOC106147635 uncharacterized LOC106147635 NW_004955604 284383 294247 + 106147635 AGCD01076875;AGCD01076876;AGCD01076877;AGCD01076878;AGCD01076879;GBCQ01004746;XR_001232566 MODEL 8727393 protein-coding Caps2 calcyphosine 2 INVOLVED IN brain-derived neurotrophic factor receptor signaling pathway (ortholog); cerebellum development (ortholog); dendrite development (ortholog) NW_004955405 14658335 14761708 - 102008053 AGCD01004931;AGCD01004932;AGCD01004933;GBDI01163209;XM_005374329;XM_005374330;XM_005374331;XM_005374332;XM_013517679;XM_013517680;XM_013517683;XM_013517685;XM_013517689 XP_005374386;XP_005374387;XP_005374388;XP_005374389;XP_013373133;XP_013373134;XP_013373137;XP_013373139;XP_013373143 MODEL 10156563 ncrna LOC106150190 uncharacterized LOC106150190 NW_004955467 13155505 13160156 + 106150190 AGCD01051667;GBDK01416263;XR_001236857 MODEL 8733061 protein-coding Vasp vasodilator stimulated phosphoprotein ENCODES a protein that exhibits identical protein binding (ortholog); profilin binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); actin filament polymerization (ortholog); axon guidance (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN cell junction (ortholog); filopodium (ortholog); focal adhesion (ortholog) NW_004955574 21569 33705 + 102013563 AGCD01075078;GBDF01157071;XM_013509549 XP_013365003 MODEL 8899569 protein-coding LOC102024766 olfactory receptor 9-like NW_004955458 3192160 3193098 - 102024766 AGCD01047278;XM_013520802 XP_013376256 MODEL 10279569 protein-coding LOC106147780 artemin-like NW_004955410 25185874 25188579 + 106147780 AGCD01011145;GBCB01087424;GBCE01049962;XM_013510583 XP_013366037 MODEL 8845998 protein-coding Il17b interleukin 17B ENCODES a protein that exhibits cytokine activity (ortholog); INVOLVED IN positive regulation of cytokine production involved in inflammatory response (ortholog); ASSOCIATED WITH Keratoconus 1 (ortholog) NW_004955415 5037270 5047405 + 102024451 AGCD01015989;GBBH01011723;XM_005380607;XM_005380608;XM_005380609;XM_005380610;XM_005380611;XM_013512106;XM_013512107 XP_005380664;XP_005380665;XP_005380666;XP_005380667;XP_005380668;XP_013367560;XP_013367561 MODEL 8810905 ncrna LOC102022353 uncharacterized LOC102022353 NW_004955453 10850833 10853572 - 102022353 AGCD01044791;GBDF01234833;XR_001236148;XR_262727 MODEL 8950179 protein-coding LOC102017199 olfactory receptor 6C4-like NW_004955458 3059124 3060059 + 102017199 AGCD01047269;XM_005397249 XP_005397306 MODEL 8760873 protein-coding Npm3 nucleophosmin/nucleoplasmin 3 INVOLVED IN rRNA processing (ortholog); rRNA transcription (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); FOUND IN nucleolus (ortholog) NW_004955485 8510404 8512198 + 102025013 AGCD01058717;AGCD01058718;GBBH01139937;GBDJ01088446;XM_013504107 XP_013359561 MODEL 10243328 ncrna LOC106149370 uncharacterized LOC106149370 NW_004955405 26393515 26394994 - 106149370 AGCD01005201;XR_001235510 MODEL 9046623 protein-coding Hdac5 histone deacetylase 5 ENCODES a protein that exhibits chromatin binding (ortholog); DNA-binding transcription activator activity (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN cellular response to fluid shear stress (ortholog); cellular response to lipopolysaccharide (ortholog); heart development (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; histone modification pathway; ASSOCIATED WITH acute kidney failure (ortholog); adjustment disorder (ortholog); bipolar disorder (ortholog); FOUND IN axonal growth cone (ortholog); chromatin (ortholog); cytoplasm (ortholog) NW_004955451 17223217 17246451 - 102008369 AGCD01043730;GBDI01010961;XM_005394517;XM_013519202;XM_013519203;XM_013519204;XM_013519205;XM_013519206;XM_013519207;XM_013519208;XM_013519209 XP_005394574;XP_013374656;XP_013374657;XP_013374658;XP_013374659;XP_013374660;XP_013374661;XP_013374662;XP_013374663 MODEL 8956832 pseudo LOC102022700 60S ribosomal protein L17 pseudogene NW_004955417 29886975 29891557 - 102022700 AGCD01018611 MODEL 8868655 ncrna LOC102008072 uncharacterized LOC102008072 NW_004955410 28976836 28996818 + 102008072 AGCD01011267;AGCD01011268;GBDF01307217;XR_259880 MODEL 10082710 ncrna LOC106148306 uncharacterized LOC106148306 NW_004955419 7147852 7156966 + 106148306 AGCD01019874;GBCB01084595;XR_001233627;XR_001233628;XR_001233629 MODEL 9012377 ncrna LOC102005131 uncharacterized LOC102005131 NW_004955413 25513569 25515865 - 102005131 AGCD01014408;AGCD01014409;GBDK01271867;XR_001233049;XR_260114 MODEL 8750184 protein-coding LOC102004794 olfactory receptor 8G1-like NW_004955412 25040599 25044790 + 102004794 AGCD01013133;XM_005378413;XM_013511248 XP_005378470;XP_013366702 MODEL 10172450 ncrna LOC106150333 uncharacterized LOC106150333 NW_004955472 727679 740880 + 106150333 AGCD01053353;AGCD01053354;GBBH01226500;XR_001237078;XR_001237079;XR_001237080 MODEL 10369669 ncrna LOC106149645 uncharacterized LOC106149645 NW_004955451 8531257 8538185 + 106149645 AGCD01043272;GBDF01121545;XR_001235952 MODEL 616940639 mirna MIR92A2 microRNA 92a-2 10286457 pseudo LOC106149105 small nuclear ribonucleoprotein E pseudogene NW_004955437 22098654 22100647 - 106149105 AGCD01034929 MODEL 10197290 ncrna LOC106146813 uncharacterized LOC106146813 NW_004955407 41214998 41220779 - 106146813 AGCD01007862;GBCB01068479;XR_001231399;XR_001231400;XR_001231401 MODEL 10196534 ncrna LOC106149783 uncharacterized LOC106149783 NW_004955453 7372254 7375743 + 106149783 AGCD01044743;GBDF01277832;XR_001236173 MODEL 8791901 ncrna LOC102013066 uncharacterized LOC102013066 NW_004955411 33836261 33840026 + 102013066 AGCD01012375;GBDF01143020;XR_259952 MODEL 8952885 ncrna LOC102016805 uncharacterized LOC102016805 NW_004955477 6096122 6129934 + 102016805 AGCD01055601;AGCD01055602;XR_263659 MODEL 10171707 pseudo LOC106148853 centrosomal protein of 70 kDa pseudogene NW_004955402 2447954 2452137 + 106148853 AGCD01000079 MODEL 8728599 protein-coding LOC102023082 cytochrome c oxidase subunit 6B2 INVOLVED IN ATP biosynthetic process (ortholog); cell differentiation (ortholog); oxygen metabolic process (ortholog); FOUND IN mitochondrial crista (ortholog); mitochondrion (ortholog) NW_004955567 890281 891675 + 102023082 AGCD01074444;AGCD01074445;GBDF01085437;XM_005413321 XP_005413378 MODEL 8831152 protein-coding Vat1 vesicle amine transport 1 ENCODES a protein that exhibits NADPH dehydrogenase (quinone) activity (ortholog); phospholipid transfer activity (ortholog); quinone reductase (NADPH) activity (ortholog); INVOLVED IN intermembrane phospholipid transfer (ortholog); negative regulation of mitochondrial fusion (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrial outer membrane (ortholog) NW_004955451 16797933 16800884 - 102003828 AGCD01043707;GBBH01030872;GBDI01009601;XM_013519246 XP_013374700 MODEL 8761605 protein-coding Cul2 cullin 2 ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin ligase complex scaffold activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN protein catabolic process (ortholog); ubiquitin-dependent protein catabolic process via the C-end degron rule pathway (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; neddylation pathway; proteasome degradation pathway involving cullin-dependent ubiquitin ligases; ASSOCIATED WITH inflammatory bowel disease (ortholog); FOUND IN Cul2-RING ubiquitin ligase complex (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955462 2580117 2659849 + 102019037 AGCD01049176;AGCD01049177;GBDI01222773;XM_005398124;XM_013521460;XM_013521461;XM_013521462 XP_005398181;XP_013376914;XP_013376915;XP_013376916 MODEL 8807897 ncrna LOC102029645 uncharacterized LOC102029645 NW_004955429 18962376 18967781 + 102029645 AGCD01028930;GBDF01081558;XR_261362 MODEL 8996131 protein-coding LOC102024768 guanine nucleotide-binding protein-like 3 NW_004955409 24482166 24484293 + 102024768 AGCD01010084;GBDK01278048;XM_005376910 XP_005376967 MODEL 8833138 protein-coding LOC102013474 translation initiation factor IF-2-like NW_004955407 18942404 19075796 + 102013474 AGCD01007290;AGCD01007291;AGCD01007292;AGCD01007293;AGCD01007294;GBDF01304388;XM_013505824 XP_013361278 MODEL 10284868 ncrna LOC106147488 uncharacterized LOC106147488 NW_004955567 1119931 1121246 + 106147488 AGCD01074460;XR_001232418 MODEL 10134247 ncrna LOC106149519 uncharacterized LOC106149519 NW_004955448 8443021 8506502 + 106149519 AGCD01041445;AGCD01041446;GBCE01155952;XR_001235767 MODEL 9053164 protein-coding Lrrc57 leucine rich repeat containing 57 ASSOCIATED WITH colorectal cancer (ortholog) NW_004955416 9230362 9237799 - 102024005 AGCD01017080;AGCD01017081;GBDK01124064;XM_005381347;XM_005381348;XM_005381349 XP_005381404;XP_005381405;XP_005381406 MODEL 8891762 pseudo LOC102022703 cyclin-dependent kinase 4 pseudogene NW_004955418 20687185 20701319 - 102022703 AGCD01019241 MODEL 8822338 protein-coding Lyset lysosomal enzyme trafficking factor INVOLVED IN lysosomal transport (ortholog); lysosome organization (ortholog); protein catabolic process (ortholog); ASSOCIATED WITH DYSOSTOSIS MULTIPLEX, AIN-NAZ TYPE (ortholog); intellectual disability (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi cisterna (ortholog); Golgi membrane (ortholog) NW_004955438 15305699 15309851 + 102003487 AGCD01035365;GBDF01074487;XM_013517270 XP_013372724 MODEL 39132454 snrna U6 U6 spliceosomal RNA 8837863 protein-coding Neurl1b neuralized E3 ubiquitin protein ligase 1B ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN ubiquitin-dependent endocytosis (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (ortholog); early endosome (ortholog) NW_004955408 25369440 25404308 + 102026398 AGCD01008640;AGCD01008641;GBBH01214795;GBDI01187937;XM_005376340 XP_005376397 MODEL 10340637 pseudo LOC106148443 protein kinase C iota type pseudogene NW_004955422 13429913 13438447 - 106148443 AGCD01022826 MODEL 10317837 protein-coding LOC106150334 uncharacterized LOC106150334 NW_004955472 909845 924601 - 106150334 AGCD01053365;GBDI01187571;XM_013522968 XP_013378422 MODEL 8818875 protein-coding Eftud2 elongation factor Tu GTP binding domain containing 2 INVOLVED IN cellular response to xenobiotic stimulus (ortholog); mRNA splicing, via spliceosome (ortholog); response to cocaine (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH colon cancer (ortholog); Developmental Disabilities (ortholog); esophageal atresia (ortholog); FOUND IN Cajal body (ortholog); catalytic step 2 spliceosome (ortholog); nuclear speck (ortholog) NW_004955451 17655659 17690117 - 102020875 AGCD01043765;AGCD01043766;AGCD01043767;GBBH01001764;XM_005394553 XP_005394610 MODEL 8699552 pseudo LOC102004795 zinc finger CCCH domain-containing protein 14-like NW_004955466 12129671 12131134 - 102004795 AGCD01051113 MODEL 8719593 protein-coding Sypl1 synaptophysin like 1 ASSOCIATED WITH intellectual disability (ortholog); FOUND IN membrane (ortholog); secretory granule (ortholog); synaptic vesicle membrane (ortholog) NW_004955410 10571888 10590978 - 102027951 AGCD01010795;AGCD01010796;GBDF01047643;XM_005377266 XP_005377323 MODEL 8941081 protein-coding LOC102022006 putative histone-lysine N-methyltransferase PRDM6 NW_004955521 1207144 1292667 + 102022006 AGCD01068179;GBDF01076337;GBDK01358422;XM_013507093 XP_013362547 MODEL 39132975 snrna U1 U1 spliceosomal RNA 8842892 pseudo LOC102004081 cationic trypsin-3-like NW_004955494 1233143 1236496 + 102004081 AGCD01061392 MODEL 8890169 protein-coding Tmem196 transmembrane protein 196 INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of cell growth (ortholog); negative regulation of cell migration (ortholog); FOUND IN cytoplasm (ortholog) NW_004955410 22455130 22509507 - 102028834 AGCD01011074;AGCD01011075;XM_005377357;XM_005377358;XM_005377359;XR_259856 XP_005377414;XP_005377415;XP_005377416 MODEL 9010803 protein-coding Gckr glucokinase regulator ENCODES a protein that exhibits carbohydrate binding (ortholog); enzyme binding (ortholog); enzyme inhibitor activity (ortholog); INVOLVED IN intracellular glucose homeostasis (ortholog); negative regulation of glucokinase activity (ortholog); protein import into nucleus (ortholog); PARTICIPATES IN glycogen metabolic pathway; ASSOCIATED WITH end stage renal disease (ortholog); Hypertriglyceridemia (ortholog); Metabolic Syndrome (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog); nucleoplasm (ortholog) NW_004955469 9461541 9485034 + 102004056 AGCD01052504;XM_005400572 XP_005400629 MODEL 10287336 protein-coding LOC106148444 uncharacterized LOC106148444 NW_004955422 22426888 22514049 - 106148444 AGCD01023160;AGCD01023161;AGCD01023162;XM_013513836 XP_013369290 MODEL 9009844 pseudo LOC102016450 60S ribosomal protein L32 pseudogene NW_004955457 8712306 8712791 - 102016450 AGCD01046916 MODEL 8920635 protein-coding Nucleolin nucleolin multifunctional protein ENCODES a protein that exhibits calcium ion binding (ortholog); DNA topoisomerase binding (ortholog); ErbB-4 class receptor binding (ortholog); INVOLVED IN angiogenesis (ortholog); cellular response to epidermal growth factor stimulus (ortholog); cellular response to leukemia inhibitory factor (ortholog); PARTICIPATES IN RNA polymerase I transcription pathway; ASSOCIATED WITH Animal Disease Models (ortholog); autistic disorder (ortholog); Left Ventricular Hypertrophy (ortholog); FOUND IN cell cortex (ortholog); cell surface (ortholog); chromosome (ortholog) NW_004955453 4154627 4164253 + 102021084 AGCD01044681;AGCD01044682;GBDF01051740;XM_005395394;XM_013519931 XP_005395451;XP_013375385 MODEL 8813039 protein-coding LOC102020188 cytochrome P450 2B4-like NW_004955687 15738 39465 - 102020188 AGCD01078040;AGCD01078041;AGCD01078042;AGCD01078043;AGCD01078044;GBCQ01116514;XM_005415070;XM_013510179 XP_005415127;XP_013365633 MODEL 8742537 protein-coding Il17c interleukin 17C ENCODES a protein that exhibits cytokine activity (ortholog); INVOLVED IN neutrophil differentiation (ortholog); positive regulation of cytokine production involved in inflammatory response (ortholog); ASSOCIATED WITH Acute Lung Injury (ortholog); Mycoplasma pneumoniae pneumonia (ortholog); FOUND IN extracellular region (ortholog) NW_004955541 2568941 2570440 + 102025843 AGCD01071416;XM_013507999 XP_013363453 MODEL 9002582 protein-coding LOC102020917 olfactory receptor 5C1 NW_004955419 5153126 5154109 - 102020917 AGCD01019786;XM_013513099 XP_013368553 MODEL 10316781 ncrna LOC106149371 uncharacterized LOC106149371 NW_004955444 11105394 11120489 + 106149371 AGCD01039034;GBDI01024995;XR_001235509 MODEL 8798537 protein-coding Golim4 golgi integral membrane protein 4 FOUND IN Golgi apparatus (ortholog); membrane (ortholog) NW_004955448 17214536 17288003 - 102012816 AGCD01041717;GBCQ01069721;XM_005393143;XM_013518629 XP_005393200;XP_013374083 MODEL 8939670 protein-coding Rpl5 ribosomal protein L5 ENCODES a protein that exhibits 5S rRNA binding (ortholog); mRNA 3'-UTR binding (ortholog); mRNA 5'-UTR binding (ortholog); INVOLVED IN cytoplasmic translation (ortholog); negative regulation of ubiquitin-dependent protein catabolic process (ortholog); positive regulation of phosphatase activity (ortholog); PARTICIPATES IN p53 signaling pathway; ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH congenital hypoplastic anemia (ortholog); Diamond-Blackfan anemia (ortholog); Diamond-Blackfan anemia 1 (ortholog); FOUND IN aminoacyl-tRNA synthetase multienzyme complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955423 1748809 1758622 - 102020459 AGCD01023451;GBCQ01007562;XM_005385039;XM_005385040 XP_005385096;XP_005385097 MODEL 8738783 protein-coding Npnt nephronectin ENCODES a protein that exhibits integrin binding (ortholog); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); cell-cell adhesion mediated by integrin (ortholog); cell-matrix adhesion (ortholog); ASSOCIATED WITH bilateral renal aplasia (ortholog); renal agenesis (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog); extracellular region (ortholog) NW_004955496 3321310 3388625 - 102029197 AGCD01062284;GBCE01032385;XM_013505415 XP_013360869 MODEL 8989949 protein-coding Ttc21b tetratricopeptide repeat domain 21B ENCODES a protein that exhibits chromatin binding (ortholog); INVOLVED IN Bergmann glial cell differentiation (ortholog); cerebellar Purkinje cell differentiation (ortholog); cerebellum development (ortholog); ASSOCIATED WITH asphyxiating thoracic dystrophy (ortholog); asphyxiating thoracic dystrophy 1 (ortholog); asphyxiating thoracic dystrophy 4 (ortholog); FOUND IN intraciliary transport particle A (ortholog) NW_004955449 8242327 8306012 + 102010959 AGCD01042009;AGCD01042010;GBDF01085390;XM_005393290 XP_005393347 MODEL 616940647 mirna MIR935 microRNA 935 10164078 ncrna LOC106150191 uncharacterized LOC106150191 NW_004955467 7056561 7071117 + 106150191 AGCD01051429;GBCE01004539;XR_001236860 MODEL 8888817 protein-coding Capsl calcyphosine like INVOLVED IN angiogenesis (ortholog); endothelial cell migration (ortholog); endothelial cell proliferation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); exudative vitreoretinopathy (ortholog) NW_004955426 20833508 20862356 - 102010285 AGCD01026575;GBCE01097061;XM_005386203;XM_013515010 XP_005386260;XP_013370464 MODEL 8903025 protein-coding Dgkb diacylglycerol kinase beta ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); lipid binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); glycerolipid metabolic process (ortholog); lipid phosphorylation (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); extrinsic component of postsynaptic density membrane (ortholog) NW_004955410 17677375 18304409 - 102019368 AGCD01010991;AGCD01010992;AGCD01010993;AGCD01010994;AGCD01010995;AGCD01010996;AGCD01010997;AGCD01010998;AGCD01010999;AGCD01011000;AGCD01011001;AGCD01011002;GBDJ01401747;XM_005377328;XM_013510618;XM_013510619;XM_013510620;XM_013510621;XM_013510623;XM_013510624 XP_005377385;XP_013366072;XP_013366073;XP_013366074;XP_013366075;XP_013366077;XP_013366078 MODEL 9012846 pseudo LOC102022354 phospholipase DDHD2-like NW_004955454 3950247 3952158 + 102022354 AGCD01045106 MODEL 10183528 ncrna LOC106147372 uncharacterized LOC106147372 NW_004955547 2743734 2750342 + 106147372 AGCD01072294;GBBH01159998;XR_001232236 MODEL 8833181 pseudo LOC102017200 17-beta-hydroxysteroid dehydrogenase type 6-like NW_004955458 4635072 4639694 - 102017200 AGCD01047423 MODEL 8714420 protein-coding Sypl2 synaptophysin like 2 INVOLVED IN heart development (ortholog); intracellular calcium ion homeostasis (ortholog); substantia nigra development (ortholog) NW_004955435 12889266 12901455 + 102029221 AGCD01033172;AGCD01033173;GBDI01297200;GBDI01297201;XM_005388862 XP_005388919 MODEL 8987903 protein-coding Hdac6 histone deacetylase 6 ENCODES a protein that exhibits acetylspermidine deacetylase activity (ortholog); alpha-tubulin binding (ortholog); ATPase inhibitor activity (ortholog); INVOLVED IN actin filament organization (ortholog); aggresome assembly (ortholog); axonal transport of mitochondrion (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH autistic disorder (ortholog); cervix uteri carcinoma in situ (ortholog); cholangiocarcinoma (ortholog); FOUND IN aggresome (ortholog); axon (ortholog); caveola (ortholog) NW_004955543 348314 378391 + 102025047 AGCD01071576;AGCD01071577;AGCD01071578;AGCD01071579;GBDI01173523;XM_005411280;XM_005411281;XM_005411282;XM_005411283;XM_005411284;XM_013508165;XM_013508166 XP_005411337;XP_005411338;XP_005411339;XP_005411340;XP_005411341;XP_013363619;XP_013363620 MODEL 8882673 ncrna LOC102005132 uncharacterized LOC102005132 NW_004955470 10770420 10783689 - 102005132 AGCD01052876;AGCD01052877;GBDF01112853;XR_263499;XR_263500 MODEL 10156610 ncrna LOC106148307 uncharacterized LOC106148307 NW_004955419 11095184 11114927 - 106148307 AGCD01019952;GBDK01314984;XR_001233630 MODEL 10129524 ncrna LOC106147636 uncharacterized LOC106147636 NW_004955605 203110 206211 + 106147636 AGCD01076932;GBCE01107763;XR_001232567 MODEL 8739207 protein-coding LOC102024769 KAT8 regulatory NSL complex subunit 2-like NW_004955409 35861135 35862428 + 102024769 AGCD01010435;XM_013510262 XP_013365716 MODEL 10236020 protein-coding LOC106149520 galectin-3-like NW_004955448 2214227 2223090 - 106149520 AGCD01041280;GBDF01144457;XM_013518591 XP_013374045 MODEL 10091752 protein-coding LOC106149107 uncharacterized LOC106149107 NW_004955404 31388257 31391535 + 106149107 AGCD01004018;AGCD01004019;GBDF01059198;XM_013516937 XP_013372391 MODEL 39134315 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 10384594 ncrna LOC106147781 uncharacterized LOC106147781 NW_004955410 25188639 25192025 + 106147781 AGCD01011145;GBDI01316938;XR_001232743 MODEL 39132456 snrna U6 U6 spliceosomal RNA 10172540 ncrna LOC106149784 uncharacterized LOC106149784 NW_004955406 538728 551532 - 106149784 AGCD01005619;XR_001236175 MODEL 8891187 ncrna LOC102004796 uncharacterized LOC102004796 NW_004955467 6856123 6857620 - 102004796 AGCD01051425;GBDI01226874;XR_263346 MODEL 8970257 protein-coding LOC102013070 endothelial cell-selective adhesion molecule NW_004955412 25824222 25832315 - 102013070 AGCD01013174;GBBH01227824;XM_005378437 XP_005378494 MODEL 8899797 protein-coding Rnf17 ring finger protein 17 ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN spermatid development (ortholog); FOUND IN cytoplasm (ortholog) NW_004955497 282559 429999 + 102004948 AGCD01062405;AGCD01062406;AGCD01062407;AGCD01062408;AGCD01062409;AGCD01062410;AGCD01062411;GBDF01004700;XM_013505510;XM_013505511;XM_013505512;XM_013505513;XM_013505514 XP_013360964;XP_013360965;XP_013360966;XP_013360967;XP_013360968 MODEL 8769910 ncrna LOC102022357 uncharacterized LOC102022357 NW_004955455 9450420 9454003 - 102022357 AGCD01045922;GBDF01053970;XR_262850 MODEL 8754161 ncrna LOC102013482 uncharacterized LOC102013482 NW_004955410 30652472 30654572 + 102013482 AGCD01011311;GBDF01251645;XR_001232753 MODEL 8772249 protein-coding Gpr89a G protein-coupled receptor 89A ENCODES a protein that exhibits voltage-gated monoatomic anion channel activity (ortholog); INVOLVED IN cholesterol homeostasis (ortholog); intracellular pH reduction (ortholog); positive regulation of canonical NF-kappaB signal transduction (ortholog); FOUND IN Golgi cisterna membrane (ortholog); Golgi membrane (ortholog); Golgi-associated vesicle membrane (ortholog) NW_004955568 436817 493188 - 102009771 AGCD01074514;AGCD01074515;AGCD01074516;AGCD01074517;AGCD01074518;AGCD01074519;AGCD01074520;GBDF01126235;XM_005413448;XM_005413449;XM_005413450 XP_005413505;XP_005413506;XP_005413507 MODEL 10191528 ncrna LOC106147489 uncharacterized LOC106147489 NW_004955567 797119 801109 + 106147489 AGCD01074433;GBCQ01145493;XR_001232419 MODEL 8971889 protein-coding Cul3 cullin 3 ENCODES a protein that exhibits cyclin binding (ortholog); identical protein binding (ortholog); Notch binding (ortholog); INVOLVED IN anaphase-promoting complex-dependent catabolic process (ortholog); cell migration (ortholog); cell morphogenesis (ortholog); PARTICIPATES IN nuclear factor, erythroid 2 like 2 signaling pathway; proteasome degradation pathway involving cullin-dependent ubiquitin ligases; Wnt signaling, canonical pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant pseudohypoaldosteronism type 1 (ortholog); developmental and epileptic encephalopathy 11 (ortholog); FOUND IN centrosome (ortholog); Cul3-RING ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955453 9546554 9629976 + 102018560 AGCD01044772;AGCD01044773;AGCD01044774;GBBH01114512;GBCB01007204;XM_013519956 XP_013375410 MODEL 10136567 ncrna LOC106149646 uncharacterized LOC106149646 NW_004955451 1305390 1306268 - 106149646 AGCD01042966;GBDF01254495;XR_001235953 MODEL 10131105 ncrna LOC106146814 uncharacterized LOC106146814 NW_004955496 7810660 7814604 + 106146814 AGCD01062385;GBDF01237025;XR_001231398 MODEL 10189130 protein-coding LOC106148308 translation initiation factor IF-2-like NW_004955419 27986915 27987528 + 106148308 AGCD01020453;GBDF01086574;XM_013513269 XP_013368723 MODEL 8780450 protein-coding Golm1 golgi membrane protein 1 INVOLVED IN nucleus organization (ortholog); regulation of lipid metabolic process (ortholog); ASSOCIATED WITH Animal Disease Models (ortholog); COVID-19 (ortholog); hepatitis (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955432 1434759 1497916 + 102025495 AGCD01030595;AGCD01030596;AGCD01030597;GBDF01081794;XM_005387922;XM_013515954;XM_013515955;XM_013515956;XM_013515957;XM_013515958;XM_013515959;XM_013515960 XP_005387979;XP_013371408;XP_013371409;XP_013371410;XP_013371411;XP_013371412;XP_013371413;XP_013371414 MODEL 8997869 protein-coding Nppa natriuretic peptide A ENCODES a protein that exhibits hormone activity (ortholog); hormone receptor binding (ortholog); neuropeptide hormone activity (ortholog); INVOLVED IN cardiac muscle hypertrophy in response to stress (ortholog); cell growth involved in cardiac muscle cell development (ortholog); cellular response to angiotensin (ortholog); PARTICIPATES IN atrial natriuretic peptide signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Lung Injury (ortholog); adenocarcinoma (ortholog); FOUND IN brush border (ortholog); cytoplasm (ortholog); extracellular region (ortholog) NW_004955486 2061196 2062805 + 102004822 AGCD01058987;GBDF01208332;XM_005403981 XP_005404038 MODEL 8946650 ncrna LOC102022705 uncharacterized LOC102022705 NW_004955419 18376765 18384837 - 102022705 AGCD01020172;GBCE01062454;XR_001233557;XR_260642 MODEL 10143968 ncrna LOC106148854 uncharacterized LOC106148854 NW_004955430 6856088 6858132 + 106148854 AGCD01029316;GBDF01020489;XR_001234571 MODEL 10265561 ncrna LOC106150192 uncharacterized LOC106150192 NW_004955467 8801051 8802058 - 106150192 AGCD01051472;GBDF01251592;XR_001236861 MODEL 8905958 ncrna LOC102016807 uncharacterized LOC102016807 NW_004955417 9029899 9106882 - 102016807 AGCD01018042;AGCD01018043;GBBH01190227;XR_001233382;XR_001233383;XR_260467 MODEL 9026012 protein-coding Neurl2 neuralized E3 ubiquitin protein ligase 2 INVOLVED IN myofibril assembly (ortholog); sarcomere organization (ortholog); PARTICIPATES IN Notch signaling pathway; FOUND IN muscle tendon junction (ortholog); VCB complex (ortholog) NW_004955445 11405195 11407819 + 102025403 AGCD01039690;GBCE01041745;XM_005392400 XP_005392457 MODEL 8940040 protein-coding LOC102004083 BPI fold-containing family A member 2 NW_004955422 28150582 28155982 - 102004083 AGCD01023344;XM_013513841 XP_013369295 MODEL 8884290 protein-coding Egf epidermal growth factor ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); growth factor activity (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN angiogenesis (ortholog); branching morphogenesis of an epithelial tube (ortholog); epidermal growth factor receptor signaling pathway (ortholog); PARTICIPATES IN altered epidermal growth factor/neuregulin signaling pathway; ceramide signaling pathway; E-cadherin signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); adenocarcinoma (ortholog); AIDS-Associated Nephropathy (ortholog); FOUND IN extracellular exosome (ortholog); extracellular region (ortholog); plasma membrane (ortholog) NW_004955496 325954 401430 - 102024024 AGCD01062225;GBCQ01008809;XM_005406183;XM_013505425 XP_005406240;XP_013360879 MODEL 8908625 pseudo LOC102023088 ferritin light chain pseudogene NW_004955446 12914277 12915113 - 102023088 AGCD01040245;XM_005392715 MODEL 8743906 protein-coding Tmem198 transmembrane protein 198 INVOLVED IN positive regulation of canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH cerebrotendinous xanthomatosis (ortholog); FOUND IN cytoplasmic vesicle (ortholog); plasma membrane (ortholog) NW_004955453 13925939 13932557 - 102029822 AGCD01044855;GBDK01379852;XM_005395511 XP_005395568 MODEL 8949214 pseudo LOC102029646 mortality factor 4-like protein 1 pseudogene NW_004955430 1361582 1362762 + 102029646 AGCD01029122 MODEL 10086777 ncrna LOC106147373 uncharacterized LOC106147373 NW_004955547 2258349 2259875 - 106147373 AGCD01072264;GBDK01059861;XR_001232237 MODEL 8990238 protein-coding LOC102020189 voltage-dependent P/Q-type calcium channel subunit alpha-1A-like NW_004955864 3995 10113 - 102020189 AGCD01078519;GBDJ01287614;XM_013510201 XP_013365655 MODEL 10287539 protein-coding Il17d interleukin 17D ENCODES a protein that exhibits cytokine activity (ortholog); protein homodimerization activity (ortholog); receptor ligand activity (ortholog); INVOLVED IN inflammatory response (ortholog); negative regulation of hemopoiesis (ortholog); positive regulation of cytokine production involved in inflammatory response (ortholog); ASSOCIATED WITH Chronic Hepatitis C (ortholog); Cytomegalovirus Infections (ortholog); hidradenitis suppurativa (ortholog); FOUND IN extracellular region (ortholog) NW_004955497 1499700 1506557 + 106146836 AGCD01062463;AGCD01062464;GBDF01304881;XM_013505463 XP_013360917 MODEL 8789474 protein-coding Vat1l vesicle amine transport 1 like NW_004955522 1001814 1162948 + 102024605 AGCD01068355;AGCD01068356;GBCE01096495;XM_005409340 XP_005409397 MODEL 9068248 protein-coding Nudc nuclear distribution C, dynein complex regulator INVOLVED IN mitotic metaphase chromosome alignment (ortholog); mitotic spindle organization (ortholog); nuclear migration (ortholog); ASSOCIATED WITH Lynch syndrome (ortholog); obesity (ortholog); FOUND IN cytoplasm (ortholog); midbody (ortholog); mitotic spindle (ortholog) NW_004955452 6261500 6278393 + 102025754 AGCD01044099;AGCD01044100;GBCQ01117442;XM_005394887;XM_013519684 XP_005394944;XP_013375138 MODEL 10380362 protein-coding LOC106149373 uncharacterized LOC106149373 NW_004955444 2358172 2360415 - 106149373 AGCD01038757;GBBH01184499;GBDI01366710;XM_013518183 XP_013373637 MODEL 8878988 protein-coding Lrrc58 leucine rich repeat containing 58 ENCODES a protein that exhibits ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); regulation of taurine biosynthetic process (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog) NW_004955427 19896034 19911233 - 102022947 AGCD01027388;GBBH01024743;XM_005386619 XP_005386676 MODEL 8869333 protein-coding LOC102005144 cytidine monophosphate-N-acetylneuraminic acid hydroxylase NW_004955483 1836388 2025256 + 102005144 AGCD01057655;AGCD01057656;AGCD01057657;AGCD01057658;AGCD01057659;AGCD01057660;AGCD01057661;AGCD01057662;AGCD01057663;AGCD01057664;AGCD01057665;AGCD01057666;GBCE01108999;XM_005403351;XM_005403352;XM_005403353;XM_013503835;XM_013503836;XM_013503837 XP_005403408;XP_005403409;XP_005403410;XP_013359289;XP_013359290;XP_013359291 MODEL 8749193 protein-coding Hdac7 histone deacetylase 7 ENCODES a protein that exhibits 14-3-3 protein binding (ortholog); chromatin binding (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN cell-cell junction assembly (ortholog); cellular response to mechanical stimulus (ortholog); negative regulation of DNA-templated transcription (ortholog); PARTICIPATES IN histone modification pathway; hypoxia inducible factor pathway; ASSOCIATED WITH alopecia areata (ortholog); colorectal cancer (ortholog); Huntington's disease (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955500 6692656 6707453 - 102018001 AGCD01063891;GBDK01016156;XM_005406612;XM_005406616 XP_005406669;XP_005406673 MODEL 9058235 pseudo LOC102024770 cytochrome c-like NW_004955460 9994664 9994982 - 102024770 AGCD01048566 MODEL 10072519 protein-coding LOC106147637 translation initiation factor IF-2-like NW_004955605 399534 403396 - 106147637 AGCD01076945;GBBH01222077;GBCE01063125;XM_013510105 XP_013365559 MODEL 8718868 protein-coding Ttc22 tetratricopeptide repeat domain 22 NW_004955464 4592667 4609148 + 102024775 AGCD01049992;GBDI01128402;XM_005398510;XM_013521666 XP_005398567;XP_013377120 MODEL 8705786 pseudo LOC102008073 39S ribosomal protein L47, mitochondrial pseudogene NW_004955411 8554284 8555056 + 102008073 AGCD01011730 MODEL 8777773 pseudo LOC102016456 phosphoglycerate kinase 1-like NW_004955410 16272427 16273969 - 102016456 AGCD01010954;XR_259840 MODEL 8989832 ncrna LOC102004798 uncharacterized LOC102004798 NW_004955467 11715338 11717008 - 102004798 AGCD01051616;GBDF01192925;XR_263361 MODEL 8932876 ncrna LOC102022706 uncharacterized LOC102022706 NW_004955420 19784334 19808399 - 102022706 AGCD01021067;GBDI01299026;XR_260728 MODEL 8955236 protein-coding Gclc glutamate-cysteine ligase catalytic subunit ENCODES a protein that exhibits ADP binding (ortholog); glutamate binding (ortholog); glutamate-cysteine ligase activity (ortholog); INVOLVED IN response to auditory stimulus; blood vessel diameter maintenance (ortholog); cell redox homeostasis (ortholog); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; cysteine metabolic pathway; glutamic acid/glutamate metabolic pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); cataract (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cytosol (ortholog); glutamate-cysteine ligase complex (ortholog) NW_004955411 2593523 2617553 + 102009808 AGCD01011514;GBCE01117484;XM_005377605 XP_005377662 MODEL 8889150 protein-coding LOC102020918 arylacetamide deacetylase-like 4 NW_004955486 810084 821062 - 102020918 AGCD01058891;AGCD01058892;XM_005403939 XP_005403996 MODEL 10068121 protein-coding LOC106150193 predicted GPI-anchored protein 58 NW_004955467 895864 897471 + 106150193 AGCD01051242;GBBH01151179;GBDF01252515;XM_013522194 XP_013377648 MODEL 8968687 protein-coding Dgkd diacylglycerol kinase delta ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); identical protein binding (ortholog); kinase binding (ortholog); INVOLVED IN diacylglycerol catabolic process (ortholog); diacylglycerol metabolic process (ortholog); lipid phosphorylation (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); Lennox-Gastaut syndrome (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN clathrin-coated pit (ortholog); cytoplasm (ortholog); cytoplasmic vesicle (ortholog) NW_004955453 2740922 2802669 - 102007619 AGCD01044636;AGCD01044637;GBCB01039518;GBCB01111507;XM_013519863;XM_013519864;XM_013519865;XM_013519866;XM_013519867 XP_013375317;XP_013375318;XP_013375319;XP_013375320;XP_013375321 MODEL 39131508 protein-coding LYSET lysosomal enzyme trafficking factor 8755060 pseudo LOC102023090 protein N-terminal glutamine amidohydrolase pseudogene NW_004955449 3894076 3895493 + 102023090 AGCD01041870 MODEL 10152510 ncrna LOC106150335 uncharacterized LOC106150335 NW_004955472 924677 932016 - 106150335 AGCD01053365;XR_001237081 MODEL 39133662 mirna MIR96 microRNA 96 10320700 ncrna LOC106147490 uncharacterized LOC106147490 NW_004955567 419170 428642 - 106147490 AGCD01074404;GBDK01255717;XR_001232420 MODEL 8821940 ncrna LOC102013484 uncharacterized LOC102013484 NW_004955411 20773140 20790799 + 102013484 AGCD01012062;GBDF01156022;XR_001232796;XR_001232797;XR_259940 MODEL 8913661 protein-coding LOC102022008 histone H3.3-like NW_004955435 12425986 12426994 + 102022008 AGCD01033147;GBDK01387908;XM_005388840 XP_005388897 MODEL 10153369 protein-coding LOC106149521 translation initiation factor IF-2-like NW_004955448 18814385 18815128 + 106149521 AGCD01041753;GBBH01183804;XM_013518594 XP_013374048 MODEL 10360984 ncrna LOC106148309 uncharacterized LOC106148309 NW_004955419 10176429 10178880 - 106148309 AGCD01019939;GBDF01222020;XR_001233649 MODEL 10332780 ncrna LOC106149108 uncharacterized LOC106149108 NW_004955437 7729853 7732513 - 106149108 AGCD01034465;GBDK01307775;XR_001235070 MODEL 39134317 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 8816389 protein-coding Nppb natriuretic peptide B ENCODES a protein that exhibits hormone receptor binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN antimicrobial humoral immune response mediated by antimicrobial peptide (ortholog); cardiac muscle hypertrophy in response to stress (ortholog); cell growth involved in cardiac muscle cell development (ortholog); PARTICIPATES IN brain natriuretic peptide signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); adult respiratory distress syndrome (ortholog); Animal Disease Models (ortholog); FOUND IN extracellular region (ortholog); perinuclear region of cytoplasm (ortholog); protein-containing complex (ortholog) NW_004955486 2054775 2056130 + 102004487 AGCD01058987;GBDJ01025595;XM_005403980 XP_005404037 MODEL 8960515 protein-coding Golm2 golgi membrane protein 2 FOUND IN Golgi apparatus (ortholog) NW_004955416 10812414 10949563 + 102008724 AGCD01017158;AGCD01017159;AGCD01017160;AGCD01017161;AGCD01017162;AGCD01017163;AGCD01017164;AGCD01017165;AGCD01017166;GBBH01033800;GBDF01125189;XM_013512605 XP_013368059 MODEL 10262861 ncrna LOC106149785 uncharacterized LOC106149785 NW_004955453 5096466 5100686 - 106149785 AGCD01044704;GBBH01006886;XR_001236174 MODEL 8978578 ncrna LOC102013074 uncharacterized LOC102013074 NW_004955414 17753092 17757875 - 102013074 AGCD01015251;GBCQ01015489;XR_260179 MODEL 8815710 protein-coding Rnf170 ring finger protein 170 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN adult walking behavior (ortholog); gene expression (ortholog); innate immune response (ortholog); ASSOCIATED WITH autosomal dominant sensory ataxia 1 (ortholog); genetic disease (ortholog); hereditary ataxia (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955457 13093914 13148800 - 102012285 AGCD01047037;AGCD01047038;GBCE01104280;GBCQ01155545;XM_005397069 XP_005397126 MODEL 8802559 protein-coding Egfl6 EGF like domain multiple 6 INVOLVED IN extracellular matrix organization (ortholog); positive regulation of cell-substrate adhesion (ortholog); ASSOCIATED WITH bladder exstrophy-epispadias-cloacal exstrophy complex (ortholog); FOUND IN basement membrane (ortholog); extracellular matrix (ortholog) NW_004955519 4557007 4616095 - 102027780 AGCD01067986;AGCD01067987;AGCD01067988;GBDJ01301779;XM_005409208 XP_005409265 MODEL 8703255 protein-coding Gprasp1 G protein-coupled receptor associated sorting protein 1 INVOLVED IN endosome to lysosome transport (ortholog); G protein-coupled receptor catabolic process (ortholog); FOUND IN cytosol (ortholog) NW_004955548 132373 137817 + 102020290 AGCD01072319;GBDI01177597;XM_005411968 XP_005412025 MODEL 39132977 snrna U1 U1 spliceosomal RNA 10289386 protein-coding LOC106149374 uncharacterized LOC106149374 NW_004955444 18407429 18412743 - 106149374 AGCD01039237;GBBH01044095;GBDJ01035684;XM_013518185 XP_013373639 MODEL 10161181 protein-coding LOC106149647 translation initiation factor IF-2-like NW_004955451 17831700 17832831 + 106149647 AGCD01043774;GBDI01234419;XM_013519157 XP_013374611 MODEL 8774773 protein-coding Nudcd1 NudC domain containing 1 ASSOCIATED WITH basal cell carcinoma (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955417 16688629 16750427 - 102023032 AGCD01018272;AGCD01018273;GBDJ01315147;XM_005381879;XM_005381880 XP_005381936;XP_005381937 MODEL 9056455 protein-coding Dgke diacylglycerol kinase epsilon ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); kinase activity (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); lipid phosphorylation (ortholog); modulation of chemical synaptic transmission (ortholog); ASSOCIATED WITH atypical hemolytic-uremic syndrome (ortholog); genetic disease (ortholog); hemolytic-uremic syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955451 5966773 5988004 - 102013367 AGCD01043194;GBDF01052985;GBDF01154242;XM_005394069 XP_005394126 MODEL 8915950 protein-coding LOC102005146 olfactory receptor 13C8-like NW_004955419 21810593 21816934 - 102005146 AGCD01020283;AGCD01020284;XM_005382788 XP_005382845 MODEL 10263049 protein-coding LOC106148855 uncharacterized LOC106148855 NW_004955430 1963888 1968767 + 106148855 AGCD01029144;XM_013515714 XP_013371168 MODEL 8915003 pseudo LOC102017203 granzyme H-like NW_004955409 35681707 35731439 + 102017203 AGCD01010428;AGCD01010429;AGCD01010430;AGCD01010431;AGCD01010432 MODEL 8848807 protein-coding Sys1 SYS1 golgi trafficking protein ASSOCIATED WITH multiple sclerosis (ortholog) NW_004955445 11934907 11975670 - 102006624 AGCD01039727;AGCD01039728;AGCD01039729;AGCD01039730;GBDJ01091542;XM_005392430;XM_005392431 XP_005392487;XP_005392488 MODEL 8922393 protein-coding Neurl3 neuralized E3 ubiquitin protein ligase 3 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN positive regulation of proteasomal protein catabolic process (ortholog); protein ubiquitination (ortholog); FOUND IN cytoplasm (ortholog) NW_004955470 3920432 3926069 - 102026519 AGCD01052712;AGCD01052713;GBDF01277265;GBDK01283395;XM_005400830 XP_005400887 MODEL 39134318 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 8922344 ncrna LOC102022361 uncharacterized LOC102022361 NW_004955456 16058739 16062110 - 102022361 AGCD01046686;GBCQ01059827;XR_262914 MODEL 10240071 ncrna LOC106148310 uncharacterized LOC106148310 NW_004955419 19254204 19290391 - 106148310 AGCD01020194;AGCD01020195;AGCD01020196;AGCD01020197;AGCD01020198;AGCD01020199;GBDF01222513;XR_001233650 MODEL 10392037 protein-coding LOC106147374 serine/arginine repetitive matrix protein 1-like NW_004955548 159907 172195 + 106147374 AGCD01072321;AGCD01072322;GBDJ01352189;XM_013508518 XP_013363972 MODEL 8816756 protein-coding Tmem200a transmembrane protein 200A NW_004955436 11257029 11268167 + 102017053 AGCD01033811;GBDJ01222058;XM_005389197 XP_005389254 MODEL 8883210 protein-coding Nppc natriuretic peptide C ENCODES a protein that exhibits hormone activity (ortholog); hormone receptor binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN angiogenesis (ortholog); animal organ development (ortholog); blood vessel remodeling (ortholog); PARTICIPATES IN C-type natriuretic peptide signaling pathway; ASSOCIATED WITH achondroplasia (ortholog); aortic valve stenosis (ortholog); arteriosclerosis (ortholog); FOUND IN extracellular region (ortholog); protein-containing complex (ortholog); secretory granule (ortholog) NW_004955453 3884580 3888494 + 102018886 AGCD01044669;GBBH01225271;XM_005395387 XP_005395444 MODEL 8975929 ncrna LOC102029647 uncharacterized LOC102029647 NW_004955430 10682591 10707998 + 102029647 AGCD01029440;GBBH01047122;XR_001234561;XR_001234563;XR_261425 MODEL 39133837 misc_rna Vault Vault RNA 10194788 ncrna LOC106146815 uncharacterized LOC106146815 NW_004955496 8187924 8198663 - 106146815 AGCD01062392;GBCE01005597;XR_001231402 MODEL 8789110 protein-coding Capza1 capping actin protein of muscle Z-line subunit alpha 1 ENCODES a protein that exhibits actin filament binding (ortholog); INVOLVED IN barbed-end actin filament capping (ortholog); cell junction assembly (ortholog); dynein-driven meiotic oscillatory nuclear movement (ortholog); PARTICIPATES IN mitochondria transport pathway; ASSOCIATED WITH esophagus squamous cell carcinoma (ortholog); FOUND IN brush border (ortholog); cell-cell junction (ortholog); cortical cytoskeleton (ortholog) NW_004955435 16048213 16087814 + 102004636 AGCD01033293;GBDF01080954;XM_005388962;XM_013516421 XP_005389019;XP_013371875 MODEL 8959319 protein-coding Il17f interleukin 17F ENCODES a protein that exhibits cytokine activity (ortholog); cytokine binding (ortholog); cytokine receptor binding (ortholog); INVOLVED IN cartilage development (ortholog); defense response to Gram-negative bacterium (ortholog); defense response to Gram-positive bacterium (ortholog); PARTICIPATES IN interleukin-23 signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); allergic asthma (ortholog); allergic rhinitis (ortholog); FOUND IN extracellular region (ortholog) NW_004955411 5852767 5859208 + 102013268 AGCD01011664;XM_013510734 XP_013366188 MODEL 8730876 protein-coding Cul4a cullin 4A ENCODES a protein that exhibits ubiquitin ligase complex scaffold activity (ortholog); ubiquitin protein ligase activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN cellular response to UV (ortholog); DNA damage response (ortholog); hemopoiesis (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); Stevens-Johnson syndrome (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (ortholog); Cul4A-RING E3 ubiquitin ligase complex (ortholog); cytoplasm (ortholog) NW_004955404 583261 617914 - 102014001 AGCD01003203;AGCD01003204;GBDK01143401;XM_013515570 XP_013371024 MODEL 10316759 pseudo LOC106147782 high mobility group protein B3 pseudogene NW_004955402 35511772 35514715 - 106147782 AGCD01000889 MODEL 8998318 protein-coding Lysmd1 LysM domain containing 1 FOUND IN nucleoplasm (ortholog) NW_004955588 517313 526857 - 102025197 AGCD01076115;GBDF01249042;XM_005414495;XM_005414496;XM_013509909;XR_001232527 XP_005414552;XP_005414553;XP_013365363 MODEL 39132458 snrna U6 U6 spliceosomal RNA 39132979 snrna U1 U1 spliceosomal RNA 10164899 ncrna LOC106147491 uncharacterized LOC106147491 NW_004955567 764426 768708 - 106147491 AGCD01074432;GBDF01306347;XR_001232421 MODEL 8992078 protein-coding LOC102024782 mitochondrial import inner membrane translocase subunit Tim13-like NW_004955413 24884672 24885885 + 102024782 AGCD01014385;GBDJ01031557;XM_013511361;XM_013511362;XR_260107 XP_013366815;XP_013366816 MODEL 150537123 mirna MIR98 microRNA 98 9064842 ncrna LOC102022010 uncharacterized LOC102022010 NW_004955437 1401348 1411809 + 102022010 AGCD01034205;GBDF01291022;XR_001235001;XR_001235002;XR_001235003 MODEL 9061830 protein-coding Gprasp2 G protein-coupled receptor associated sorting protein 2 ENCODES a protein that exhibits amyloid-beta binding (ortholog); G protein-coupled receptor binding (ortholog); INVOLVED IN hematopoietic stem cell homeostasis (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); intellectual disability (ortholog); X-linked deafness 7 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955548 172442 202686 + 102020613 AGCD01072322;AGCD01072323;GBDF01252846;XM_013508532;XM_013508533;XM_013508534;XM_013508535;XM_013508536;XR_001232250 XP_013363986;XP_013363987;XP_013363988;XP_013363989;XP_013363990 MODEL 10349642 ncrna LOC106149522 uncharacterized LOC106149522 NW_004955448 3400362 3413353 + 106149522 AGCD01041335;GBDF01119039;XR_001235768 MODEL 10359842 protein-coding Rpl6 ribosomal protein L6 ENCODES a protein that exhibits 5.8S rRNA binding (ortholog); mRNA binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN A band (ortholog); cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog) NW_004955482 8917777 8923150 - 106146503 AGCD01057556;AGCD01057557;GBCB01004318;GBDK01007836;XM_013503571 XP_013359025 MODEL 8957734 protein-coding Ttc23 tetratricopeptide repeat domain 23 INVOLVED IN positive regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH orofaciodigital syndrome (ortholog); FOUND IN cilium (ortholog) NW_004955416 26583219 26664519 - 102030420 AGCD01017599;AGCD01017600;GBCB01058906;XM_005381620;XM_005381621;XM_005381622;XM_005381623;XM_005381625;XM_005381626;XM_013512540;XM_013512541 XP_005381677;XP_005381678;XP_005381679;XP_005381680;XP_005381682;XP_005381683;XP_013367994;XP_013367995 MODEL 8846359 protein-coding LOC102008077 olfactory receptor 8B3 NW_004955412 25357388 25358344 - 102008077 AGCD01013151;XM_005378420 XP_005378477 MODEL 9060848 pseudo LOC102016457 alpha-enolase pseudogene NW_004955410 9065318 9066649 - 102016457 AGCD01010758 MODEL 8719739 protein-coding LOC102005152 olfactory receptor 2A2-like NW_004955491 447741 450169 + 102005152 AGCD01060335;XM_005404725 XP_005404782 MODEL 10136037 ncrna LOC106150194 uncharacterized LOC106150194 NW_004955467 8843074 8845183 - 106150194 AGCD01051475;XR_001236865;XR_001236866 MODEL 8897851 protein-coding LOC102004805 cystatin-12-like NW_004955415 30453323 30456586 + 102004805 AGCD01016664;GBDF01005832;XM_005380969 XP_005381026 MODEL 8957589 protein-coding LOC102022711 cardiotrophin-2 NW_004955493 7741380 7747696 - 102022711 AGCD01061223;GBDI01041162;XM_005405279 XP_005405336 MODEL 8928033 protein-coding LOC102013077 olfactory receptor 6-like NW_004955414 22675950 22676894 - 102013077 AGCD01015469;XM_005380510 XP_005380567 MODEL 9023746 ncrna LOC102023093 uncharacterized LOC102023093 NW_004955402 46979980 47001260 + 102023093 AGCD01001170;GBDF01162629;XR_259095;XR_259096 MODEL 10182145 ncrna LOC106150336 uncharacterized LOC106150336 NW_004955472 1698010 1699112 + 106150336 AGCD01053409;GBDK01024649;XR_001237082 MODEL 10312349 protein-coding LOC106148445 UPF0235 protein C15orf40-like NW_004955422 25462604 25464525 + 106148445 AGCD01023250;XM_013513840 XP_013369294 MODEL 8707726 protein-coding Rnf175 ring finger protein 175 NW_004955471 8019842 8079565 - 102006022 AGCD01053174;AGCD01053175;AGCD01053176;GBDF01194289;XM_005400926 XP_005400983 MODEL 8802277 protein-coding Tmem200b transmembrane protein 200B NW_004955452 8122576 8124713 - 102020302 AGCD01044209;GBBH01011543;GBCC01032036;XM_005395305 XP_005395362 MODEL 9064500 protein-coding Hdac8 histone deacetylase 8 ENCODES a protein that exhibits chromatin binding (ortholog); deacetylase activity (ortholog); histone deacetylase activity (ortholog); INVOLVED IN cellular response to forskolin (ortholog); cellular response to trichostatin A (ortholog); mitotic sister chromatid cohesion (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH amphetamine abuse (ortholog); atrial heart septal defect (ortholog); Cardiomegaly (ortholog); FOUND IN chromosome (ortholog); cytoplasm (ortholog); nucleus (ortholog) NW_004955475 11748502 12012884 - 102014041 AGCD01055169;AGCD01055170;AGCD01055171;AGCD01055172;AGCD01055173;AGCD01055174;AGCD01055175;AGCD01055176;AGCD01055177;GBDI01054107;XM_005401688 XP_005401745 MODEL 10150001 ncrna LOC106147639 uncharacterized LOC106147639 NW_004955606 352012 361956 - 106147639 AGCD01076962;GBDI01164225;XR_001232572 MODEL 8815559 pseudo LOC102004085 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like NW_004955495 2998284 2999787 + 102004085 AGCD01061814 MODEL 8945473 protein-coding Il17ra interleukin 17 receptor A ENCODES a protein that exhibits interleukin-17 receptor activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN cellular response to cytokine stimulus (ortholog); defense response to fungus (ortholog); fibroblast activation (ortholog); ASSOCIATED WITH brain ischemia (ortholog); chronic mucocutaneous candidiasis (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN extracellular region (ortholog); plasma membrane (ortholog) NW_004955454 5230384 5252769 + 102028716 AGCD01045136;GBBH01142826;GBDK01129636;XM_005395965;XM_013520213;XM_013520214;XM_013520215 XP_005396022;XP_013375667;XP_013375668;XP_013375669 MODEL 8780641 protein-coding Nudcd2 NudC domain containing 2 FOUND IN microtubule cytoskeleton (ortholog); mitotic spindle (ortholog) NW_004955408 16858635 16864617 - 102005671 AGCD01008448;GBCE01153559;XM_005376283 XP_005376340 MODEL 10105239 ncrna LOC106149786 uncharacterized LOC106149786 NW_004955453 15381291 15387793 - 106149786 AGCD01044891;GBDK01295473;XR_001236176;XR_001236177 MODEL 10260254 ncrna LOC106147492 uncharacterized LOC106147492 NW_004955567 883151 885150 - 106147492 AGCD01074443;GBDF01251944;XR_001232422 MODEL 9030806 protein-coding LOC102024783 taste receptor type 2 member 140-like NW_004955413 8187058 8188005 - 102024783 AGCD01013854;XM_005379631 XP_005379688 MODEL 8750443 protein-coding Gclm glutamate-cysteine ligase modifier subunit ENCODES a protein that exhibits glutamate-cysteine ligase activity (ortholog); glutamate-cysteine ligase catalytic subunit binding (ortholog); protein heterodimerization activity (ortholog); INVOLVED IN apoptotic mitochondrial changes (ortholog); blood vessel diameter maintenance (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); PARTICIPATES IN 2-hydroxyglutaric aciduria pathway; cysteine metabolic pathway; glutamic acid/glutamate metabolic pathway; ASSOCIATED WITH berylliosis (ortholog); Chemical and Drug Induced Liver Injury (ortholog); Liver Injury (ortholog); FOUND IN glutamate-cysteine ligase complex (ortholog) NW_004955423 782468 805384 + 102011455 AGCD01023420;AGCD01023421;GBBH01187846;XM_005385004 XP_005385061 MODEL 8980737 protein-coding Dgkg diacylglycerol kinase gamma ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); lipid binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); glycerolipid metabolic process (ortholog); lipid phosphorylation (ortholog); FOUND IN cytosol (ortholog); membrane (ortholog) NW_004955420 21296515 21481651 + 102007235 AGCD01021134;AGCD01021135;AGCD01021136;AGCD01021137;AGCD01021138;GBBH01017583;XM_005383282;XM_005383283;XM_005383284 XP_005383339;XP_005383340;XP_005383341 MODEL 8710613 protein-coding Lrrc59 leucine rich repeat containing 59 ASSOCIATED WITH glioblastoma (ortholog); hepatocellular carcinoma (ortholog); lung non-small cell carcinoma (ortholog); FOUND IN endoplasmic reticulum (ortholog); mitochondrial nucleoid (ortholog) NW_004955451 11316139 11328107 + 102013896 AGCD01043349;GBDF01007688;XM_005394173 XP_005394230 MODEL 39134320 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 8792153 protein-coding Gprasp3 G protein-coupled receptor associated sorting protein family member 3 ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN learning or memory (ortholog); negative regulation of neuron apoptotic process (ortholog); positive regulation of dendritic spine morphogenesis (ortholog); FOUND IN cytosol (ortholog); nucleoplasm (ortholog) NW_004955548 230525 236043 + 102021803 AGCD01072324;AGCD01072325;GBDI01177598;XM_013508530 XP_013363984 MODEL 8990182 protein-coding Syt1 synaptotagmin 1 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium ion sensor activity (ortholog); calcium-dependent phospholipid binding (ortholog); INVOLVED IN calcium activated phospholipid scrambling (ortholog); calcium ion-regulated exocytosis of neurotransmitter (ortholog); calcium-dependent activation of synaptic vesicle fusion (ortholog); PARTICIPATES IN calcium/calcium-mediated signaling pathway; ASSOCIATED WITH Baker-Gordon Syndrome (ortholog); Experimental Seizures (ortholog); genetic disease (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); dense core granule (ortholog) NW_004955405 17840012 18372156 + 102018357 AGCD01005009;AGCD01005010;AGCD01005011;AGCD01005012;AGCD01005013;AGCD01005014;AGCD01005015;GBBH01016778;XM_005374356;XM_005374357;XM_005374358;XM_005374359 XP_005374413;XP_005374414;XP_005374415;XP_005374416 MODEL 8703183 ncrna LOC102016810 uncharacterized LOC102016810 NW_004955482 9604236 9611654 + 102016810 AGCD01057574;GBDF01128151;XR_001230966;XR_001230967 MODEL 8905569 pseudo LOC102004807 putative protein FAM10A5 NW_004955415 13842980 13844236 - 102004807 AGCD01016270 MODEL 8870591 protein-coding Npr1 natriuretic peptide receptor 1 ENCODES a protein that exhibits guanylate cyclase activity (ortholog); hormone binding (ortholog); natriuretic peptide receptor activity (ortholog); INVOLVED IN cell surface receptor signaling pathway (ortholog); cGMP biosynthetic process (ortholog); dopamine metabolic process (ortholog); ASSOCIATED WITH Aortic Rupture (ortholog); Cardiomegaly (ortholog); congestive heart failure (ortholog); FOUND IN ANPR-A receptor complex (ortholog); endoplasmic reticulum membrane (ortholog); membrane (ortholog) NW_004955545 323386 338654 + 102019536 AGCD01071785;AGCD01071786;GBDI01219542;XM_005411439;XM_013508350 XP_005411496;XP_013363804 MODEL 10341588 ncrna LOC106149648 uncharacterized LOC106149648 NW_004955451 17848376 17849679 - 106149648 AGCD01043778;GBDK01192906;XR_001235954 MODEL 10264749 ncrna LOC106149109 uncharacterized LOC106149109 NW_004955437 6023735 6025983 + 106149109 AGCD01034413;XR_001235071 MODEL 9062278 protein-coding Capza2 capping actin protein of muscle Z-line subunit alpha 2 ASSOCIATED WITH COVID-19 (ortholog); intellectual disability (ortholog); renal cell carcinoma (ortholog); FOUND IN brush border (ortholog); cortical cytoskeleton (ortholog); F-actin capping protein complex (ortholog) NW_004955432 22595169 22625363 + 102013441 AGCD01031263;GBDJ01075806;XM_013515922 XP_013371376 MODEL 8742370 protein-coding LOC102020191 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2-like NW_004956420 3401 4413 - 102020191 AGCD01079568;GBDI01258722;GBDK01028378;XM_013510226 XP_013365680 MODEL 8737426 protein-coding Golph3 golgi phosphoprotein 3 ENCODES a protein that exhibits cargo adaptor activity (ortholog); enzyme binding (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN asymmetric Golgi ribbon formation (ortholog); cell adhesion molecule production (ortholog); cell migration (ortholog); FOUND IN cytosol (ortholog); endosome (ortholog); Golgi apparatus (ortholog) NW_004955426 17980514 18017041 - 102022105 AGCD01026509;GBDI01062477;XM_005386154;XM_005386155 XP_005386211;XP_005386212 MODEL 10272582 ncrna LOC106148856 uncharacterized LOC106148856 NW_004955431 5180088 5181649 - 106148856 AGCD01030016;GBDF01172199;XR_001234573 MODEL 8845801 pseudo LOC102017213 ubiquitin-conjugating enzyme E2 L3-like NW_004955413 9498850 9499337 + 102017213 AGCD01013907 MODEL 10325199 ncrna LOC106148311 uncharacterized LOC106148311 NW_004955419 29371020 29402246 - 106148311 AGCD01020495;GBDF01308231;XR_001233651 MODEL 8927609 pseudo LOC102016458 methylosome subunit pICln pseudogene NW_004955411 13133891 13135932 - 102016458 AGCD01011873 MODEL 8830886 pseudo LOC102022364 1,5-anhydro-D-fructose reductase pseudogene NW_004955408 16942735 16943660 - 102022364 AGCD01008449 MODEL 8903774 protein-coding Ttc23l tetratricopeptide repeat domain 23 like FOUND IN midbody (ortholog) NW_004955426 19985179 20029902 + 102030550 AGCD01026560;GBDJ01376678;XM_005386177;XM_005386178;XM_005386181;XM_013514964;XM_013514965;XM_013514966;XM_013514967;XM_013514968;XR_001234319 XP_005386234;XP_005386235;XP_005386238;XP_013370418;XP_013370419;XP_013370420;XP_013370421;XP_013370422 MODEL 8781200 ncrna LOC102005154 uncharacterized LOC102005154 NW_004955493 5108829 5118871 - 102005154 AGCD01061059;GBDF01187998;XR_264083 MODEL 10265001 ncrna LOC106149375 uncharacterized LOC106149375 NW_004955444 6369144 6371993 + 106149375 AGCD01038861;XR_001235522 MODEL 10116928 protein-coding LOC106150195 transcription factor GATA-6-like NW_004955402 10646324 10648093 + 106150195 AGCD01000283;GBDJ01386767;XM_013522276 XP_013377730 MODEL 39132459 snrna U6 U6 spliceosomal RNA 8707940 protein-coding LOC102013488 disintegrin and metalloproteinase domain-containing protein 29-like NW_004955466 20379 80896 + 102013488 AGCD01050641;AGCD01050642;AGCD01050643;AGCD01050644;AGCD01050645;AGCD01050646;AGCD01050647;AGCD01050648;AGCD01050649;XM_005399240 XP_005399297 MODEL 9023046 pseudo LOC102023096 zinc finger CCCH domain-containing protein 15 pseudogene NW_004955402 18254821 18256134 - 102023096 AGCD01000528 MODEL 10139373 ncrna LOC106150337 uncharacterized LOC106150337 NW_004955402 10721653 10722383 - 106150337 AGCD01000288;GBDJ01161572;XR_001237098 MODEL 10392044 ncrna LOC106147783 uncharacterized LOC106147783 NW_004955410 26714534 26720624 + 106147783 AGCD01011199;GBCQ01148682;XR_001232744;XR_001232745 MODEL 8913825 protein-coding Cul4b cullin 4B ENCODES a protein that exhibits damaged DNA binding (ortholog); ubiquitin ligase complex scaffold activity (ortholog); INVOLVED IN astrocyte differentiation (ortholog); gene expression (ortholog); neuron projection development (ortholog); ASSOCIATED WITH Asthenozoospermia (ortholog); Developmental Disabilities (ortholog); Dwarfism (ortholog); FOUND IN Cul4-RING E3 ubiquitin ligase complex (ortholog); Cul4A-RING E3 ubiquitin ligase complex (ortholog); Cul4B-RING E3 ubiquitin ligase complex (ortholog) NW_004955572 1308491 1365147 + 102003816 AGCD01074949;GBDF01160515;XM_005413656;XM_005413657;XM_005413658;XM_005413659;XM_013509444 XP_005413713;XP_005413714;XP_005413715;XP_005413716;XP_013364898 MODEL 8701212 protein-coding Tmem200c transmembrane protein 200C NW_004955402 5235381 5248845 + 102014100 AGCD01000131;AGCD01000132;AGCD01000133;GBDF01042126;XM_005373144 XP_005373201 MODEL 8950303 protein-coding Rnf180 ring finger protein 180 ENCODES a protein that exhibits ubiquitin conjugating enzyme binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN adult behavior (ortholog); norepinephrine metabolic process (ortholog); positive regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Triple Negative Breast Neoplasms (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955446 4544128 4733295 - 102022979 AGCD01040039;AGCD01040040;AGCD01040041;AGCD01040042;AGCD01040043;AGCD01040044;GBDK01430945;XM_005392638;XM_013518461;XM_013518462;XM_013518463;XM_013518464;XM_013518465 XP_005392695;XP_013373915;XP_013373916;XP_013373917;XP_013373918;XP_013373919 MODEL 9018245 ncrna LOC102020930 uncharacterized LOC102020930 NW_004955423 24576706 24593183 + 102020930 AGCD01024037;GBDF01260322;XR_260991 MODEL 10178334 ncrna LOC106147640 uncharacterized LOC106147640 NW_004955607 71055 90342 + 106147640 AGCD01076973;AGCD01076974;GBDF01209793;XR_001232573 MODEL 8822254 protein-coding Rpl6 ribosomal protein L6 NW_004956735;NW_004955458 1;11840323 3327;11840673 +;+ 102027037 AGCD01047761;AGCD01080090;AY533226;GBCE01007044;NM_001282363 AAS59428;NP_001269292;Q6QMZ4 VALIDATED 10309696 pseudo LOC106147375 protein FAM126B pseudogene NW_004955548 2903786 2904473 - 106147375 AGCD01072411 MODEL 8754735 protein-coding Egfl7 EGF like domain multiple 7 ENCODES a protein that exhibits Notch binding (ortholog); INVOLVED IN blood vessel development (ortholog); negative regulation of cell migration (ortholog); negative regulation of Notch signaling pathway (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 14 (ortholog); FOUND IN extracellular region (ortholog) NW_004955513 4145059 4154918 - 102004191 AGCD01066922;AGCD01066923;GBDI01006336;XM_005408482;XM_005408483;XM_013506698;XM_013506699;XM_013506700 XP_005408539;XP_005408540;XP_013362152;XP_013362153;XP_013362154 MODEL 8733998 ncrna LOC102029648 uncharacterized LOC102029648 NW_004955512 2902748 2904301 + 102029648 AGCD01066692;GBDF01280985;XR_001231729;XR_264443 MODEL 39133839 misc_rna Vault Vault RNA 10262054 ncrna LOC106146816 uncharacterized LOC106146816 NW_004955496 8054431 8061823 + 106146816 AGCD01062388;GBDF01278204;XR_001231404;XR_001231405 MODEL 8719291 pseudo LOC102013084 cyclic AMP-dependent transcription factor ATF-4 pseudogene NW_004955417 10565016 10567924 - 102013084 AGCD01018079 MODEL 8965471 protein-coding Lrrc61 leucine rich repeat containing 61 NW_004955491 4942934 4954705 + 102018103 AGCD01060465;XM_013504595 XP_013360049 MODEL 10112134 ncrna LOC106148446 uncharacterized LOC106148446 NW_004955422 19612856 19618995 + 106148446 AGCD01023024;GBDF01194576;XR_001233887 MODEL 8882216 protein-coding Lysmd2 LysM domain containing 2 ASSOCIATED WITH COVID-19 (ortholog) NW_004955409 2862478 2874017 + 102021526 AGCD01009225;GBBH01227326;GBCB01100443;XM_005376639 XP_005376696 MODEL 39132981 snrna U1 U1 spliceosomal RNA 626189203 mirna MIR99A microRNA 99a 10122154 ncrna LOC106146817 uncharacterized LOC106146817 NW_004955496 3253912 3260192 - 106146817 AGCD01062284;XR_001231407;XR_001231408 MODEL 10304406 ncrna LOC106149523 uncharacterized LOC106149523 NW_004955448 14238364 14243707 + 106149523 AGCD01041628;GBDF01094987;XR_001235769 MODEL 8762389 protein-coding LOC102022011 IQ domain-containing protein F5 NW_004955532 3547528 3549402 - 102022011 AGCD01070286;GBDK01320263;XM_005410329 XP_005410386 MODEL 8702771 protein-coding Hdac9 histone deacetylase 9 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); histone deacetylase activity (ortholog); histone deacetylase activity, hydrolytic mechanism (ortholog); INVOLVED IN cellular response to insulin stimulus (ortholog); cholesterol homeostasis (ortholog); determination of adult lifespan (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH atherosclerosis (ortholog); Auriculocondylar Syndrome 4 (ortholog); middle cerebral artery infarction (ortholog); FOUND IN cytoplasm (ortholog); histone methyltransferase complex (ortholog); nucleus (ortholog) NW_004955410 21046312 21932029 + 102025552 AGCD01011056;AGCD01011057;AGCD01011058;AGCD01011059;AGCD01011060;AGCD01011061;AGCD01011062;AGCD01011063;AGCD01011064;AGCD01011065;AGCD01011066;GBDF01088540;XM_005377344;XM_005377345;XM_005377349;XM_005377350;XM_005377351;XM_013510571 XP_005377401;XP_005377402;XP_005377406;XP_005377407;XP_005377408;XP_013366025 MODEL 10227832 protein-coding LOC106149110 uncharacterized LOC106149110 NW_004955437 9451139 9455896 + 106149110 AGCD01034531;GBDF01082417;XM_013516945;XM_013516946 XP_013372399;XP_013372400 MODEL 8824290 pseudo LOC102020193 prefoldin subunit 4 pseudogene NW_004955403 39947439 39960187 + 102020193 AGCD01002652;XM_005373866 MODEL 8911505 protein-coding Neurl4 neuralized E3 ubiquitin protein ligase 4 ENCODES a protein that exhibits DNA binding (ortholog); NAD+-dinitrogen-reductase ADP-D-ribosyltransferase activity (ortholog); INVOLVED IN mitochondrial DNA repair (ortholog); spermatogenesis (ortholog); FOUND IN mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955467 9588651 9600680 + 102019376 AGCD01051519;GBDI01178052;XM_005399515;XM_005399516;XM_005399517;XM_005399518 XP_005399572;XP_005399573;XP_005399574;XP_005399575 MODEL 10246590 ncrna LOC106149787 uncharacterized LOC106149787 NW_004955453 4269849 4272453 + 106149787 AGCD01044686;GBCE01036940;XR_001236180 MODEL 10251910 protein-coding LOC106147493 leukocyte immunoglobulin-like receptor subfamily A member 5 NW_004955567 1756350 1772884 + 106147493 AGCD01074489;XM_013509314 XP_013364768 MODEL 8987168 protein-coding Nudcd3 NudC domain containing 3 INVOLVED IN cilium assembly (ortholog); protein localization to pericentriolar material (ortholog); ASSOCIATED WITH Liver Neoplasms (ortholog); FOUND IN cytoplasmic dynein complex (ortholog) NW_004955456 7558768 7645051 + 102020087 AGCD01046424;AGCD01046425;AGCD01046426;GBBH01001130;XM_005396666 XP_005396723 MODEL 8741834 protein-coding LOC102022719 zinc finger protein 14-like NW_004955499 360968 399537 - 102022719 AGCD01063222;AGCD01063223;AGCD01063224;AGCD01063225;AGCD01063226;AGCD01063227;AGCD01063228;GBDF01234193;XM_013505549 XP_013361003 MODEL 39134321 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 8987230 protein-coding Dgkh diacylglycerol kinase eta ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); identical protein binding (ortholog); kinase binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); lipid phosphorylation (ortholog); phosphatidic acid biosynthetic process (ortholog); ASSOCIATED WITH Diabetic Nephropathies (ortholog); FOUND IN actin cytoskeleton (ortholog); cytoplasm (ortholog); endosome (ortholog) NW_004955518 4104700 4263657 - 102022731 AGCD01067820;AGCD01067821;AGCD01067822;AGCD01067823;GBBH01109666;GBDK01075088;XM_005409113 XP_005409170 MODEL 10376178 ncrna LOC106148312 uncharacterized LOC106148312 NW_004955419 27226974 27238719 - 106148312 AGCD01020427;GBBH01054569;XR_001233652;XR_001233653 MODEL 8999362 ncrna LOC102005155 uncharacterized LOC102005155 NW_004955494 4421919 4432652 + 102005155 AGCD01061498;GBDF01157914;XR_001231313;XR_264112;XR_264113 MODEL 39133835 misc_rna Vault Vault RNA 8737802 protein-coding Syt10 synaptotagmin 10 ENCODES a protein that exhibits calcium ion binding (ortholog); identical protein binding (ortholog); phosphatidylinositol-4,5-bisphosphate binding (ortholog); INVOLVED IN chemical synaptic transmission (ortholog); positive regulation of calcium ion-dependent exocytosis (ortholog); presynaptic dense core vesicle exocytosis (ortholog); ASSOCIATED WITH Experimental Seizures (ortholog); FOUND IN exocytic vesicle (ortholog); glutamatergic synapse (ortholog); presynapse (ortholog) NW_004955505 2392086 2449528 + 102026450 AGCD01064994;AGCD01064995;AGCD01064996;GBDJ01401455;XM_005407171 XP_005407228 MODEL 8725192 protein-coding Ttc24 tetratricopeptide repeat domain 24 NW_004955545 2670629 2679093 + 102003907 AGCD01071915;GBBH01143366;XM_005415343;XM_013508312;XM_013508313;XM_013508314;XM_013508315;XM_013508316;XM_013508317;XM_013508318;XM_013508319;XM_013508320 XP_005415400;XP_013363766;XP_013363767;XP_013363768;XP_013363769;XP_013363770;XP_013363771;XP_013363772;XP_013363773;XP_013363774 MODEL 10126994 ncrna LOC106149376 uncharacterized LOC106149376 NW_004955444 6350688 6355748 + 106149376 AGCD01038860;GBDF01267933;XR_001235523 MODEL 8756139 ncrna LOC102008079 uncharacterized LOC102008079 NW_004955413 2802254 2809284 + 102008079 AGCD01013559;GBCB01093657;XR_001233052;XR_260052 MODEL 8861347 protein-coding Npr2 natriuretic peptide receptor 2 ENCODES a protein that exhibits guanylate cyclase activity (ortholog); hormone binding (ortholog); identical protein binding (ortholog); INVOLVED IN activation of meiosis involved in egg activation (ortholog); axonogenesis (ortholog); axonogenesis involved in innervation (ortholog); PARTICIPATES IN C-type natriuretic peptide signaling pathway; ASSOCIATED WITH achondroplasia (ortholog); acromesomelic dysplasia (ortholog); acromesomelic dysplasia, Maroteaux type (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); neuron projection (ortholog) NW_004955472 506351 523647 - 102006237 AGCD01053339;GBCB01056474;GBCB01056476;XM_005400996 XP_005401053 MODEL 10325970 ncrna LOC106150338 uncharacterized LOC106150338 NW_004955472 6750149 6778663 - 106150338 AGCD01053610;AGCD01053611;XR_001237088 MODEL 8835506 protein-coding LOC102013491 NACHT, LRR and PYD domains-containing protein 1-like NW_004955467 10981913 11033217 - 102013491 AGCD01051593;AGCD01051594;AGCD01051595;AGCD01051596;AGCD01051597;GBDK01014412;XM_013522161;XM_013522162;XM_013522163;XM_013522164 XP_013377615;XP_013377616;XP_013377617;XP_013377618 MODEL 8801420 protein-coding LOC102020931 olfactory receptor 7A10-like NW_004955495 8365313 8366269 + 102020931 AGCD01062202;XM_013505129 XP_013360583 MODEL 8943755 protein-coding Tmem201 transmembrane protein 201 ENCODES a protein that exhibits actin filament binding (ortholog); lamin binding (ortholog); INVOLVED IN angiogenesis (ortholog); centrosome localization (ortholog); fibroblast migration (ortholog); FOUND IN cortical endoplasmic reticulum (ortholog); nuclear envelope (ortholog); nuclear inner membrane (ortholog) NW_004955486 3881571 3900879 - 102021352 AGCD01059043;AGCD01059044;GBBH01193164;GBBH01193165;XM_013504166 XP_013359620 MODEL 8725329 protein-coding Golph3l golgi phosphoprotein 3 like ENCODES a protein that exhibits cargo adaptor activity (ortholog); phosphatidylinositol-4-phosphate binding (ortholog); INVOLVED IN Golgi organization (ortholog); positive regulation of protein secretion (ortholog); protein targeting to Golgi apparatus (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955413 154696 183657 + 102008297 AGCD01013440;AGCD01013441;AGCD01013442;AGCD01013443;GBDF01221489;XM_005378663;XM_005378664;XM_013511413 XP_005378720;XP_005378721;XP_013366867 MODEL 9042453 protein-coding Gcm1 glial cells missing transcription factor 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN astrocyte fate commitment (ortholog); branching involved in labyrinthine layer morphogenesis (ortholog); cell differentiation involved in embryonic placenta development (ortholog); FOUND IN nucleus (ortholog); transcription regulator complex (ortholog) NW_004955411 2872758 2917154 + 102011634 AGCD01011521;AGCD01011522;AGCD01011523;AGCD01011524;GBDF01057346;XM_005377607;XM_005377608;XM_005377609 XP_005377664;XP_005377665;XP_005377666 MODEL 8999097 protein-coding LOC102024786 vitamin D 25-hydroxylase ENCODES a protein that exhibits D3 vitamins binding (ortholog); heme binding (ortholog); iron ion binding (ortholog); INVOLVED IN calcitriol biosynthetic process from calciol (ortholog); response to cesium ion (ortholog); response to ionizing radiation (ortholog); ASSOCIATED WITH Abdominal Obesity (ortholog); autism spectrum disorder (ortholog); brain infarction (ortholog) NW_004955414 29929130 29948151 - 102024786 AGCD01015720;GBDK01219149;XM_005380334;XM_005380335 XP_005380391;XP_005380392 MODEL 8887320 protein-coding Gprc5a G protein-coupled receptor class C group 5 member A INVOLVED IN negative regulation of epidermal growth factor-activated receptor activity (ortholog); ASSOCIATED WITH rheumatoid arthritis (ortholog); FOUND IN cytoplasmic vesicle membrane (ortholog); plasma membrane (ortholog); vesicle (ortholog) NW_004955413 9765564 9784847 + 102020550 AGCD01013910;AGCD01013911;AGCD01013912;AGCD01013913;GBDK01014848;XM_005378975 XP_005379032 MODEL 10296267 protein-coding LOC106147494 leukocyte immunoglobulin-like receptor subfamily A member 5 NW_004955567 1820363 1824975 + 106147494 AGCD01074491;GBDF01000431;XM_013509315 XP_013364769 MODEL 8723184 ncrna LOC102004808 uncharacterized LOC102004808 NW_004955476 10982505 10987287 - 102004808 AGCD01055434;GBDF01013264;XR_263645;XR_263646 MODEL 10351442 protein-coding LOC106149649 brain acid soluble protein 1-like NW_004955451 3466886 3467724 + 106149649 AGCD01043054;GBCQ01141414;XM_013519165 XP_013374619 MODEL 9056643 protein-coding LOC102016811 histone H1.3 NW_004955483 816219 816977 + 102016811 AGCD01057632;GBDJ01089971;XM_005403296 XP_005403353 MODEL 8964349 protein-coding Nudt1 nudix hydrolase 1 ENCODES a protein that exhibits 2-hydroxy-ATP hydrolase activity (ortholog); 2-hydroxy-dATP hydrolase activity (ortholog); 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity (ortholog); INVOLVED IN DNA protection (ortholog); male gonad development (ortholog); purine nucleoside catabolic process (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); Cadmium Poisoning (ortholog); Experimental Mammary Neoplasms (ortholog); FOUND IN acrosomal vesicle (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955460 9678270 9689106 + 102023441 AGCD01048548;GBDI01132131;XM_005397824 XP_005397881 MODEL 8882628 protein-coding Il17rb interleukin 17 receptor B INVOLVED IN positive regulation of inflammatory response (ortholog); positive regulation of interleukin-13 production (ortholog); positive regulation of interleukin-5 production (ortholog); ASSOCIATED WITH asthma (ortholog); interstitial lung disease (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); plasma membrane (ortholog) NW_004955430 3831665 3847366 + 102004410 AGCD01029228;AGCD01029229;GBCQ01129637;XM_005387375 XP_005387432 MODEL 10392081 pseudo LOC106148857 RNA polymerase II subunit A C-terminal domain phosphatase pseudogene NW_004955431 1784477 1791146 - 106148857 AGCD01029918 MODEL 39132983 snrna U1 U1 spliceosomal RNA 8778765 protein-coding Lysmd3 LysM domain containing 3 ENCODES a protein that exhibits peptidoglycan binding (ortholog); INVOLVED IN Golgi organization (ortholog); ASSOCIATED WITH nicotine dependence (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); plasma membrane (ortholog) NW_004955418 21103679 21116005 + 102026113 AGCD01019255;AGCD01019256;AGCD01019257;GBDI01222580;XM_005382272;XM_005382273;XM_005382275 XP_005382329;XP_005382330;XP_005382332 MODEL 10145233 ncrna LOC106147376 uncharacterized LOC106147376 NW_004955548 766055 773868 + 106147376 AGCD01072341;GBDK01118113;XR_001232239 MODEL 8961405 protein-coding LOC102016467 signal-regulatory protein beta-1-like NW_004955470 300335 320458 - 102016467 AGCD01052609;GBCE01114114;XM_005400819 XP_005400876 MODEL 8977920 ncrna LOC102020195 uncharacterized LOC102020195 NW_004955405 35941436 35942684 - 102020195 AGCD01005405;GBDK01097372;XR_259433 MODEL 8858193 protein-coding Rpl7 ribosomal protein L7 ENCODES a protein that exhibits 5S rRNA binding (ortholog); DNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN cytoplasmic translation (ortholog); liver regeneration (ortholog); ribosomal large subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; FOUND IN A band (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955444 6910818 6914047 + 102024058 AGCD01038877;AGCD01038878;GBDF01009566;XM_013518196 XP_013373650 MODEL 8792879 ncrna LOC102029651 uncharacterized LOC102029651 NW_004955432 2324699 2347647 + 102029651 AGCD01030614;GBDF01288341;XR_261505 MODEL 8852069 protein-coding LOC102022366 bcl-2-like protein 2 NW_004955409 37012376 37017785 - 102022366 AGCD01010488;GBDK01240448;XM_005377084;XM_005377085 XP_005377141;XP_005377142 MODEL 8972169 protein-coding LOC102004087 zinc finger protein 709-like NW_004955497 2376 35406 + 102004087 AGCD01062397;AGCD01062398;GBDF01011194;XM_013505442;XM_013505444 XP_013360896;XP_013360898 MODEL 8728254 protein-coding Tmem203 transmembrane protein 203 INVOLVED IN intracellular calcium ion homeostasis (ortholog); spermatogenesis (ortholog); ASSOCIATED WITH epilepsy (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955513 5206407 5207882 - 102009746 AGCD01066962;GBDK01192286;XM_005408602 XP_005408659 MODEL 10208754 protein-coding LOC106147784 forkhead box protein D1-like NW_004955410 28043825 28044548 - 106147784 AGCD01011229;GBCQ01058790;GBDJ01282933;XM_013510606 XP_013366060 MODEL 8943440 protein-coding LOC102023098 vomeronasal type-1 receptor 2-like NW_004955604 464901 465824 + 102023098 AGCD01076908;XM_005414885 XP_005414942 MODEL 10301209 ncrna LOC106148313 uncharacterized LOC106148313 NW_004955419 27241984 27266100 - 106148313 AGCD01020427;AGCD01020428;XR_001233654 MODEL 8712034 protein-coding Cul5 cullin 5 ENCODES a protein that exhibits ubiquitin ligase complex scaffold activity (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN cell migration (ortholog); cerebral cortex radially oriented cell migration (ortholog); negative regulation of focal adhesion assembly (ortholog); PARTICIPATES IN neddylation pathway; proteasome degradation pathway involving cullin-dependent ubiquitin ligases; ASSOCIATED WITH Brain Injuries (ortholog); Breast Neoplasms (ortholog); Hemorrhagic Shock (ortholog); FOUND IN Cul5-RING ubiquitin ligase complex (ortholog); nucleus (ortholog); site of DNA damage (ortholog) NW_004955412 10266072 10336156 + 102014031 AGCD01012764;AGCD01012765;AGCD01012766;GBDF01053200;XM_013510972 XP_013366426 MODEL 8752182 protein-coding LOC102005156 olfactory receptor 4X2-like NW_004955422 356829 357764 + 102005156 AGCD01022404;XM_005384936 XP_005384993 MODEL 626189204 mirna MIRLET7A1 microRNA let-7a-1 8718908 protein-coding Rnf181 ring finger protein 181 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein autoubiquitination (ortholog) NW_004955424 1907745 1910037 - 102027657 AGCD01024250;GBCQ01010722;XM_005385422 XP_005385479 MODEL 8823844 protein-coding Dgki diacylglycerol kinase iota ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); GTPase inhibitor activity (ortholog); small GTPase binding (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); excitatory postsynaptic potential (ortholog); habituation (ortholog); FOUND IN axon terminus (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955494 5119419 5541058 + 102006587 AGCD01061518;AGCD01061519;AGCD01061520;AGCD01061521;AGCD01061522;GBDF01250767;XM_013505028 XP_013360482 MODEL 10207234 protein-coding LOC106147495 natural cytotoxicity triggering receptor 1 NW_004955567 1855257 1856265 - 106147495 AGCD01074493;GBDJ01321609;XM_013509317 XP_013364771 MODEL 10312298 ncrna LOC106146818 uncharacterized LOC106146818 NW_004955496 3595958 3602782 + 106146818 AGCD01062296;GBDF01014934;XR_001231409 MODEL 10083632 ncrna LOC106147641 uncharacterized LOC106147641 NW_004955607 414220 424036 + 106147641 AGCD01076985;GBCQ01021884;XR_001232574 MODEL 8904575 protein-coding Syt11 synaptotagmin 11 ENCODES a protein that exhibits beta-tubulin binding (ortholog); identical protein binding (ortholog); SNARE binding (ortholog); INVOLVED IN autophagy (ortholog); calcium ion regulated lysosome exocytosis (ortholog); establishment of vesicle localization (ortholog); ASSOCIATED WITH type 2 diabetes mellitus (ortholog); FOUND IN axon (ortholog); cell body (ortholog); cytoplasm (ortholog) NW_004955545 2054720 2074526 + 102011049 AGCD01071882;GBCE01040966;XM_005411617;XM_013508238;XM_013508239;XM_013508240 XP_005411674;XP_013363692;XP_013363693;XP_013363694 MODEL 10245671 ncrna LOC106149111 uncharacterized LOC106149111 NW_004955437 9444948 9448287 - 106149111 AGCD01034531;GBDI01346240;XR_001235075 MODEL 9055271 protein-coding Neurod1 neuronal differentiation 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN amacrine cell differentiation (ortholog); anterior/posterior pattern specification (ortholog); camera-type eye development (ortholog); ASSOCIATED WITH diabetes mellitus (ortholog); Experimental Diabetes Mellitus (ortholog); fundus dystrophy (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); RNA polymerase II transcription regulator complex (ortholog) NW_004955403 15595888 15600040 + 102019227 AGCD01002049;GBDF01040587;XM_005373354 XP_005373411 MODEL 10108931 ncrna LOC106150339 uncharacterized LOC106150339 NW_004955472 7277848 7298260 + 106150339 AGCD01053618;GBDF01145537;XR_001237096 MODEL 10200104 ncrna LOC106149788 uncharacterized LOC106149788 NW_004955453 3312030 3333019 - 106149788 AGCD01044654;AGCD01044655;AGCD01044656;GBDK01417108;XR_001236181 MODEL 8830504 protein-coding Hdc histidine decarboxylase ENCODES a protein that exhibits amino acid binding (ortholog); histidine decarboxylase activity (ortholog); identical protein binding (ortholog); INVOLVED IN histamine biosynthetic process (ortholog); L-histidine catabolic process (ortholog); PARTICIPATES IN histidine metabolic pathway; histidinemia pathway; ASSOCIATED WITH asthma (ortholog); Chlamydophila Infections (ortholog); Gilles de la Tourette syndrome (ortholog); FOUND IN cytosol (ortholog); dendrite (ortholog); endoplasmic reticulum (ortholog) NW_004955409 4051574 4072641 + 102004567 AGCD01009272;GBDF01116811;XM_005376674 XP_005376731 MODEL 8861576 ncrna LOC102013495 uncharacterized LOC102013495 NW_004955468 8052975 8220399 + 102013495 AGCD01052019;AGCD01052020;AGCD01052021;AGCD01052022;AGCD01052023;GBCQ01143499;XR_001236948;XR_263403;XR_263404 MODEL 8934253 protein-coding LOC102020932 melanoma-associated antigen 8-like NW_004955498 3294883 3295887 - 102020932 AGCD01062891;XM_005406476 XP_005406533 MODEL 39132460 snrna U6 U6 spliceosomal RNA 10091762 ncrna LOC106150196 uncharacterized LOC106150196 NW_004955468 4671750 4672827 + 106150196 AGCD01051919;GBDJ01097284;XR_001236872 MODEL 8921813 protein-coding LOC102013091 zinc finger protein 709-like NW_004955420 30017669 30021517 - 102013091 AGCD01021527;AGCD01021528;GBDK01132241;XM_013513351 XP_013368805 MODEL 39134322 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 8803201 protein-coding LOC102022725 prostaglandin-E(2) 9-reductase-like NW_004955429 451636 466116 + 102022725 AGCD01028351;AGCD01028352;AGCD01028353;AGCD01028354;GBCQ01003437;XM_005386854 XP_005386911 MODEL 10164068 ncrna LOC106148447 uncharacterized LOC106148447 NW_004955422 4522187 4527872 + 106148447 AGCD01022542;XR_001233890 MODEL 8963640 protein-coding Lrrc63 leucine rich repeat containing 63 NW_004955518 3891612 3940698 + 102019727 AGCD01067811;AGCD01067812;AGCD01067813;AGCD01067814;AGCD01067815;GBDF01222845;XM_005409100;XM_005409101;XM_005409102;XM_005409103;XR_264570 XP_005409157;XP_005409158;XP_005409159;XP_005409160 MODEL 39133841 misc_rna Vault Vault RNA 8885615 protein-coding Gprc5b G protein-coupled receptor class C group 5 member B ENCODES a protein that exhibits protein kinase activator activity (ortholog); protein kinase binding (ortholog); protein kinase inhibitor activity (ortholog); INVOLVED IN cell volume homeostasis (ortholog); glucose homeostasis (ortholog); intracellular signal transduction (ortholog); ASSOCIATED WITH Megalencephalic Leukoencephalopathy with Subcortical Cysts 3 (ortholog); FOUND IN cell surface (ortholog); extracellular exosome (ortholog); membrane raft (ortholog) NW_004955442 3548478 3571341 - 102011052 AGCD01037507;GBBH01090860;GBCQ01062670;XM_005391116 XP_005391173 MODEL 8831512 protein-coding LOC102017219 ankyrin repeat domain-containing protein 49 NW_004955414 98384 104654 - 102017219 AGCD01014701;GBDK01229818;XM_005379677 XP_005379734 MODEL 8888099 protein-coding Capza3 capping actin protein of muscle Z-line subunit alpha 3 INVOLVED IN actin filament organization (ortholog); cytoplasm organization (ortholog); spermatid development (ortholog); ASSOCIATED WITH male infertility (ortholog); FOUND IN acrosomal vesicle (ortholog); cortical cytoskeleton (ortholog); membrane (ortholog) NW_004955413 14846394 14847489 + 102012084 AGCD01014053;GBDF01006903;XM_005379041 XP_005379098 MODEL 8981562 ncrna LOC102004088 uncharacterized LOC102004088 NW_004955425 20438853 20450026 + 102004088 AGCD01025731;GBCB01044195;XR_001234293 MODEL 10212632 protein-coding LOC106149377 translation initiation factor IF-2-like NW_004955444 4115379 4115712 + 106149377 AGCD01038803;GBCE01163975;XM_013518194 XP_013373648 MODEL 10143980 ncrna LOC106149524 uncharacterized LOC106149524 NW_004955448 734902 736484 - 106149524 AGCD01041237;XR_001235770 MODEL 8784458 pseudo LOC102016816 arylacetamide deacetylase-like 4 pseudogene NW_004955486 824860 828312 + 102016816 AGCD01058892 MODEL 8844659 pseudo LOC102005159 E3 SUMO-protein ligase PIAS2-like NW_004955503 7889282 7891162 + 102005159 AGCD01064803 MODEL 8714948 protein-coding Npr3 natriuretic peptide receptor 3 ENCODES a protein that exhibits chloride ion binding (ortholog); G protein-coupled peptide receptor activity (ortholog); hormone binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); angiogenesis (ortholog); blood vessel remodeling (ortholog); PARTICIPATES IN C-type natriuretic peptide signaling pathway; natriuretic peptide signaling pathway; ASSOCIATED WITH bone disease (ortholog); BOUDIN-MORTIER SYNDROME (ortholog); diabetic retinopathy (ortholog); FOUND IN plasma membrane (ortholog); protein-containing complex (ortholog) NW_004955426 18491350 18559299 + 102024479 AGCD01026524;AGCD01026525;GBCE01056173;XM_005386161;XM_005386162 XP_005386218;XP_005386219 MODEL 9046756 protein-coding Egfl8 EGF like domain multiple 8 INVOLVED IN in utero embryonic development (ortholog) NW_004955437 630099 633592 + 102013968 AGCD01034152;GBDI01325138;XM_005389429;XM_005389431;XM_005389432 XP_005389486;XP_005389488;XP_005389489 MODEL 8875574 protein-coding Il17rc interleukin 17 receptor C ENCODES a protein that exhibits coreceptor activity (ortholog); interleukin-17 receptor activity (ortholog); signaling receptor binding (ortholog); INVOLVED IN defense response to fungus (ortholog); granulocyte chemotaxis (ortholog); interleukin-17A-mediated signaling pathway (ortholog); ASSOCIATED WITH Candidiasis, Familial, 9 (ortholog); Experimental Liver Cirrhosis (ortholog); interstitial lung disease (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955561 1410100 1423041 + 102010952 AGCD01073855;GBCB01095866;XM_005413040;XM_005413041;XM_005413042;XM_005413044;XM_013509087;XM_013509088 XP_005413097;XP_005413098;XP_005413099;XP_005413101;XP_013364541;XP_013364542 MODEL 10382543 ncrna LOC106147377 uncharacterized LOC106147377 NW_004955548 852747 908256 - 106147377 AGCD01072344;AGCD01072345;AGCD01072346;GBDJ01342031;XR_001232249 MODEL 8753221 protein-coding Syt12 synaptotagmin 12 INVOLVED IN long-term synaptic potentiation (ortholog); presynaptic modulation of chemical synaptic transmission (ortholog); spontaneous exocytosis of neurotransmitter (ortholog); FOUND IN hippocampal mossy fiber to CA3 synapse (ortholog); presynapse (ortholog); synaptic vesicle (ortholog) NW_004955422 18359105 18381312 - 102026878 AGCD01022946;AGCD01022947;GBCE01176509;GBDJ01407588;XM_005384360 XP_005384417 MODEL 8995972 protein-coding Gcm2 glial cells missing transcription factor 2 ENCODES a protein that exhibits DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell differentiation (ortholog); intracellular calcium ion homeostasis (ortholog); intracellular phosphate ion homeostasis (ortholog); ASSOCIATED WITH familial isolated hypoparathyroidism (ortholog); familial isolated hypoparathyroidism 2 (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog) NW_004955465 3523029 3530342 + 102019373 AGCD01050381;GBDI01283548;XM_005398830 XP_005398887 MODEL 8715217 pseudo LOC102029656 methionine aminopeptidase 2 pseudogene NW_004955433 11147410 11149598 + 102029656 AGCD01031649 MODEL 8909976 pseudo LOC102022012 RNA polymerase II subunit A C-terminal domain phosphatase SSU72 pseudogene NW_004955534 3841086 3842295 + 102022012 AGCD01070603;XM_005410477 MODEL 8812330 pseudo LOC102023099 olfactory receptor 7A17-like NW_004955626 111700 112600 + 102023099 AGCD01077468 MODEL 8873605 protein-coding LOC102008080 cytochrome c-like NW_004955413 7665162 7665698 - 102008080 AGCD01013828;GBDF01269962;XM_005378936 XP_005378993 MODEL 626189169 mirna MIRLET7A2 microRNA let-7a-2 8887647 protein-coding Cul7 cullin 7 ENCODES a protein that exhibits ubiquitin ligase complex scaffold activity (ortholog); INVOLVED IN epithelial to mesenchymal transition (ortholog); Golgi organization (ortholog); microtubule cytoskeleton organization (ortholog); PARTICIPATES IN neddylation pathway; proteasome degradation pathway involving cullin-dependent ubiquitin ligases; ASSOCIATED WITH 3-M syndrome (ortholog); autistic disorder (ortholog); Dwarfism (ortholog); FOUND IN 3M complex (ortholog); centrosome (ortholog); Cul7-RING ubiquitin ligase complex (ortholog) NW_004955437 9003482 9018260 - 102030667 AGCD01034512;AGCD01034513;GBBH01088710;XM_005389748;XM_013516962;XM_013516963 XP_005389805;XP_013372416;XP_013372417 MODEL 9042633 protein-coding Golt1a golgi transport 1A FOUND IN endoplasmic reticulum (ortholog); Golgi cis cisterna (ortholog); nuclear envelope (ortholog) NW_004955406 40049060 40061902 - 102019242 AGCD01006652;AGCD01006653;GBDJ01371333;XM_005375289 XP_005375346 MODEL 10252581 ncrna LOC106146819 uncharacterized LOC106146819 NW_004955496 6166889 6294934 + 106146819 AGCD01062364;AGCD01062365;AGCD01062366;GBDF01020565;XR_001231410;XR_001231411 MODEL 8929214 protein-coding Lysmd4 LysM domain containing 4 NW_004955416 27057845 27063459 - 102006346 AGCD01017609;GBBH01078815;GBCQ01153176;XM_005381637;XM_013512520 XP_005381694;XP_013367974 MODEL 8798803 pseudo LOC102020197 KDEL motif-containing protein 2 pseudogene NW_004955405 14139351 14140744 + 102020197 AGCD01004919 MODEL 10245498 ncrna LOC106149789 uncharacterized LOC106149789 NW_004955453 942778 947280 - 106149789 AGCD01044602;GBDF01028043;XR_001236183 MODEL 8834753 protein-coding Dgkk diacylglycerol kinase kappa ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); intracellular signal transduction (ortholog); response to oxidative stress (ortholog); ASSOCIATED WITH hypospadias (ortholog); FOUND IN plasma membrane (ortholog) NW_004955543 1468328 1601101 - 102017385 AGCD01071623;AGCD01071624;AGCD01071625;XM_005411355 XP_005411412 MODEL 9054588 protein-coding LOC102024788 olfactory receptor 52R1-like NW_004955414 20422239 20423183 - 102024788 AGCD01015372;XM_013511719 XP_013367173 MODEL 8952304 protein-coding Neurod2 neuronal differentiation 2 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN associative learning (ortholog); behavioral fear response (ortholog); cellular response to calcium ion (ortholog); ASSOCIATED WITH developmental and epileptic encephalopathy 72 (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog) NW_004955451 14368605 14370544 - 102019763 AGCD01043549;XM_005394611 XP_005394668 MODEL 8746965 protein-coding Rpl7a ribosomal protein L7a ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN cellular response to Thyroid stimulating hormone (ortholog); cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; FOUND IN cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog) NW_004955513 2703765 2707803 + 102011895 AGCD01066886;GBDF01149194;XM_013506575 XP_013362029 MODEL 8891865 protein-coding Hddc2 HD domain containing 2 NW_004955436 6675892 6694086 - 102029553 AGCD01033691;AGCD01033692;GBDF01090317;XM_005389156 XP_005389213 MODEL 8865512 pseudo LOC102004812 peptidyl-prolyl cis-trans isomerase A pseudogene NW_004955416 26864290 26864700 - 102004812 AGCD01017606 MODEL 8983305 protein-coding LOC102022372 chromosome unknown open reading frame, human C6orf120 NW_004955411 3927722 3929720 - 102022372 AGCD01011562;GBDK01232050;XM_005377643;XM_005377644;XM_005377645 XP_005377700;XP_005377701;XP_005377702 MODEL 10349647 ncrna LOC106149650 uncharacterized LOC106149650 NW_004955451 2610508 2616405 - 106149650 AGCD01043016;GBDF01304878;XR_001235957 MODEL 8758570 protein-coding Ttc27 tetratricopeptide repeat domain 27 ASSOCIATED WITH neuromuscular disease (ortholog) NW_004955441 945619 1111973 + 102023299 AGCD01036743;AGCD01036744;AGCD01036745;AGCD01036746;AGCD01036747;GBDF01192444;XM_005390841 XP_005390898 MODEL 9000666 protein-coding Tmem204 transmembrane protein 204 INVOLVED IN lymph vessel development (ortholog); regulation of vascular endothelial growth factor receptor signaling pathway (ortholog); smooth muscle cell differentiation (ortholog); FOUND IN plasma membrane (ortholog) NW_004955442 15678938 15701554 - 102004328 AGCD01037878;GBCQ01093569;XM_005391564 XP_005391621 MODEL 39134323 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 9042470 protein-coding Lrrc66 leucine rich repeat containing 66 NW_004955447 18493752 18497789 + 102011710 AGCD01041175;GBCQ01014491;XM_005415352 XP_005415409 MODEL 10085189 protein-coding LOC106148314 predicted GPI-anchored protein 58 NW_004955403 33798620 33799422 + 106148314 AGCD01002466;GBDI01106171;XM_013513317 XP_013368771 MODEL 10262848 protein-coding LOC106148858 uncharacterized LOC106148858 NW_004955431 5142025 5148942 - 106148858 AGCD01030015;GBDK01039377;XM_013515725 XP_013371179 MODEL 8773572 ncrna LOC102017220 uncharacterized LOC102017220 NW_004955469 8942157 8947968 - 102017220 AGCD01052483;AGCD01052484;GBDF01078798;XR_001236992;XR_263441 MODEL 10126303 ncrna LOC106147642 uncharacterized LOC106147642 NW_004955610 343297 348168 - 106147642 AGCD01077118;AGCD01077119;XR_001232575 MODEL 8709267 protein-coding Capzb capping actin protein of muscle Z-line subunit beta ENCODES a protein that exhibits actin binding (ortholog); actin filament binding (ortholog); beta-tubulin binding (ortholog); INVOLVED IN actin polymerization or depolymerization (ortholog); activation of protein kinase C activity (ortholog); barbed-end actin filament capping (ortholog); ASSOCIATED WITH Acute Coronary Syndrome (ortholog); Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); FOUND IN brush border (ortholog); cortical cytoskeleton (ortholog); dendritic spine (ortholog) NW_004955452 34454 168514 - 102011618 AGCD01043797;AGCD01043798;AGCD01043799;AGCD01043800;AGCD01043801;AGCD01043802;GBCE01000866;XM_005394657;XM_005394658 XP_005394714;XP_005394715 MODEL 8917425 protein-coding Rnf182 ring finger protein 182 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein ubiquitination (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); Colorectal Neoplasms (ortholog); FOUND IN cytoplasm (ortholog) NW_004955465 813996 871907 - 102009922 AGCD01050317;AGCD01050318;AGCD01050319;AGCD01050320;AGCD01050321;GBDJ01203300;XM_005398795;XM_013521765 XP_005398852;XP_013377219 MODEL 8989404 pseudo LOC102016469 heat shock protein HSP 90-beta pseudogene NW_004955472 2722752 2724357 - 102016469 AGCD01053489 MODEL 39132461 snrna U6 U6 spliceosomal RNA 10246594 ncrna LOC106150197 uncharacterized LOC106150197 NW_004955468 7537920 7561963 - 106150197 AGCD01052002;XR_001236873 MODEL 10241622 ncrna LOC106147785 uncharacterized LOC106147785 NW_004955410 28122307 28129869 - 106147785 AGCD01011241;XR_001232746;XR_001232747 MODEL 9012847 pseudo LOC102022730 60S acidic ribosomal protein P1-like NW_004955432 1232045 1232422 + 102022730 AGCD01030588 MODEL 8945322 protein-coding Lyst lysosomal trafficking regulator INVOLVED IN blood coagulation (ortholog); defense response to bacterium (ortholog); defense response to protozoan (ortholog); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); disease by infectious agent (ortholog); epilepsy (ortholog); FOUND IN cytosol (ortholog); microtubule cytoskeleton (ortholog); nucleoplasm (ortholog) NW_004955492 4161976 4371637 + 102021019 AGCD01060710;AGCD01060711;AGCD01060712;AGCD01060713;AGCD01060714;AGCD01060715;AGCD01060716;GBDK01219082;XM_005404943;XM_013504690;XM_013504691;XM_013504692;XM_013504693;XM_013504694;XM_013504695;XM_013504696 XP_005405000;XP_013360144;XP_013360145;XP_013360146;XP_013360147;XP_013360148;XP_013360149;XP_013360150 MODEL 8900550 ncrna LOC102029660 uncharacterized LOC102029660 NW_004955528 1699999 1704571 - 102029660 AGCD01069568;GBCE01119825;XR_001231990 MODEL 39132984 snrna U1 U1 spliceosomal RNA 9029266 protein-coding Dgkq diacylglycerol kinase theta ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); diacylglycerol-dependent serine/threonine kinase activity (ortholog); DNA-binding transcription factor binding (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); cellular response to bile acid (ortholog); diacylglycerol metabolic process (ortholog); ASSOCIATED WITH Sjogren's syndrome (ortholog); Usher syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoskeleton (ortholog); cytosol (ortholog) NW_004955514 452548 475240 - 102004415 AGCD01067010;AGCD01067011;GBCB01099242;XM_005408848 XP_005408905 MODEL 8876507 protein-coding Neurod4 neuronal differentiation 4 INVOLVED IN amacrine cell differentiation (ortholog); camera-type eye development (ortholog); cell fate commitment (ortholog); FOUND IN centrosome (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955458 2138849 2146636 + 102010774 AGCD01047215;XM_005397236 XP_005397293 MODEL 10267286 pseudo LOC106147496 serine/threonine-protein kinase 3 pseudogene NW_004955408 24746083 24747709 + 106147496 AGCD01008625 MODEL 8717743 protein-coding Gprc5c G protein-coupled receptor class C group 5 member C FOUND IN plasma membrane (ortholog); signaling receptor complex (ortholog) NW_004955553 1303176 1315482 + 102007816 AGCD01072878;GBCB01003226;XM_005412233;XM_013508636 XP_005412290;XP_013364090 MODEL 9014790 protein-coding LOC102016817 zinc finger protein 709-like NW_004955420 30216297 30220450 + 102016817 AGCD01021539;AGCD01021540;GBCE01006395;GBCQ01009263;XM_005383587 XP_005383644 MODEL 8700742 protein-coding LOC102023101 uncharacterized LOC102023101 NW_004955403 1477883 1487353 + 102023101 AGCD01001723;GBDJ01318496;XM_013514706 XP_013370160 MODEL 8705700 ncrna LOC102005160 uncharacterized LOC102005160 NW_004955505 2073316 2169827 - 102005160 AGCD01064984;AGCD01064985;GBDF01195356;XR_001231571;XR_264302;XR_264303 MODEL 10316174 protein-coding LOC106148859 uncharacterized LOC106148859 NW_004955431 5579692 5628088 + 106148859 AGCD01030035;AGCD01030036;AGCD01030037;XM_013515727 XP_013371181 MODEL 8742041 protein-coding Nprl2 NPR2 like, GATOR1 complex subunit ENCODES a protein that exhibits GTPase activator activity (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); negative regulation of kinase activity (ortholog); negative regulation of TORC1 signaling (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH epilepsy (ortholog); familial focal epilepsy with variable foci (ortholog); familial focal epilepsy with variable foci 1 (ortholog); FOUND IN GATOR1 complex (ortholog); lysosomal membrane (ortholog) NW_004955532 2148950 2152671 - 102006495 AGCD01070220;GBCB01043369;XM_005410275 XP_005410332 MODEL 8706589 pseudo LOC102013096 probable E3 ubiquitin-protein ligase HECTD2 NW_004955493 1068126 1073096 + 102013096 AGCD01060877 MODEL 10332456 ncrna LOC106147378 uncharacterized LOC106147378 NW_004955548 249436 279260 + 106147378 AGCD01072326;AGCD01072327;AGCD01072328;AGCD01072329;GBDF01221437;XR_001232251 MODEL 8911819 protein-coding Cul9 cullin 9 INVOLVED IN microtubule cytoskeleton organization (ortholog); protein ubiquitination (ortholog); regulation of mitotic nuclear division (ortholog); ASSOCIATED WITH imperforate anus (ortholog); FOUND IN cullin-RING ubiquitin ligase complex (ortholog) NW_004955437 9109997 9145181 + 102004519 AGCD01034516;AGCD01034517;AGCD01034518;GBDJ01353552;XM_013516908 XP_013372362 MODEL 8720467 protein-coding Il17rd interleukin 17 receptor D INVOLVED IN negative regulation of epithelial to mesenchymal transition (ortholog); negative regulation of transforming growth factor beta receptor signaling pathway (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH adenoid cystic carcinoma (ortholog); arteriovenous malformations of the brain (ortholog); Brain Injuries (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955430 6842756 6873195 - 102013322 AGCD01029316;GBDK01095576;GBDK01353156;XM_013515704 XP_013371158 MODEL 8855875 protein-coding Card10 caspase recruitment domain family member 10 INVOLVED IN activation of NF-kappaB-inducing kinase activity (ortholog); negative regulation of cell migration involved in sprouting angiogenesis (ortholog); positive regulation of protein localization to nucleus (ortholog); ASSOCIATED WITH immunodeficiency 89 (ortholog); primary open angle glaucoma (ortholog) NW_004955413 23920929 23946109 - 102005023 AGCD01014340;GBDI01290875;GBDK01129378;XM_005379206;XM_013511650 XP_005379263;XP_013367104 MODEL 10382226 ncrna LOC106149378 uncharacterized LOC106149378 NW_004955444 4151999 4163306 - 106149378 AGCD01038805;GBCE01043361;XR_001235525 MODEL 8864627 ncrna LOC102004091 uncharacterized LOC102004091 NW_004955427 3205789 3215694 + 102004091 AGCD01026926;AGCD01026927;GBDF01288983;XR_001234360 MODEL 8797418 pseudo LOC102004813 40S ribosomal protein S2-like NW_004955416 5201588 5210682 + 102004813 AGCD01016904 MODEL 8891709 protein-coding Hddc3 HD domain containing 3 NW_004955416 14993492 14995818 - 102020802 AGCD01017295;GBDF01082302;XM_005381526 XP_005381583 MODEL 8782539 protein-coding Vav1 vav guanine nucleotide exchange factor 1 ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (ortholog); phosphorylation-dependent protein binding (ortholog); phosphotyrosine residue binding (ortholog); INVOLVED IN B cell proliferation (ortholog); G protein-coupled receptor signaling pathway (ortholog); immune response (ortholog); PARTICIPATES IN interleukin-6 signaling pathway; ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); autistic disorder (ortholog); endometriosis (ortholog); FOUND IN cell-cell junction (ortholog); cytoplasm (ortholog) NW_004955495 2697508 2755468 - 102030545 AGCD01061793;AGCD01061794;AGCD01061795;AGCD01061796;AGCD01061797;AGCD01061798;AGCD01061799;GBDJ01387443;XM_005405685;XM_005405689 XP_005405742;XP_005405746 MODEL 10081622 protein-coding LOC106149525 serine/arginine repetitive matrix protein 3-like NW_004955448 11093278 11094935 + 106149525 AGCD01041513;GBDI01354810;XM_013518602 XP_013374056 MODEL 8824360 protein-coding Rpl7l1 ribosomal protein L7 like 1 INVOLVED IN blastocyst formation (ortholog); FOUND IN mitochondrion (ortholog); nucleolus (ortholog) NW_004955437 8903274 8916598 + 102024844 AGCD01034506;AGCD01034507;GBDF01048743;XM_005389726;XM_013517110 XP_005389783;XP_013372564 MODEL 8923083 protein-coding LOC102022374 caspase-4 NW_004955412 7744809 7814990 - 102022374 AGCD01012703;AGCD01012704;AGCD01012705;GBDI01278598;XM_005378000;XM_005378001;XM_005378002;XM_005378004;XM_013511166;XM_013511167;XM_013511168 XP_005378057;XP_005378058;XP_005378059;XP_005378061;XP_013366620;XP_013366621;XP_013366622 MODEL 10394135 protein-coding LOC106149112 translation initiation factor IF-2-like NW_004955437 8831923 8833051 + 106149112 AGCD01034501;GBBH01023042;GBDI01086152;XM_013516950 XP_013372404 MODEL 39134324 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 10122181 ncrna LOC106150340 uncharacterized LOC106150340 NW_004955472 1973576 1976345 - 106150340 AGCD01053425;GBDF01118125;XR_001237097 MODEL 9007008 pseudo LOC102008087 Y+L amino acid transporter 2 pseudogene NW_004955472 118385 120399 + 102008087 AGCD01053315 MODEL 9005605 ncrna LOC102013496 uncharacterized LOC102013496 NW_004955414 14859238 14895910 - 102013496 AGCD01015161;GBDF01156200;XR_260169;XR_260170 MODEL 8856819 protein-coding Lyve1 lymphatic vessel endothelial hyaluronan receptor 1 ENCODES a protein that exhibits cargo receptor activity (ortholog); hyaluronic acid binding (ortholog); transmembrane signaling receptor activity (ortholog); INVOLVED IN glycosaminoglycan catabolic process (ortholog); hyaluronan catabolic process (ortholog); positive regulation of cellular extravasation (ortholog); ASSOCIATED WITH hepatocellular carcinoma (ortholog); FOUND IN cell periphery (ortholog); plasma membrane (ortholog) NW_004955414 26161768 26175621 - 102007884 AGCD01015640;GBDK01074993;XM_005380283 XP_005380340 MODEL 8921926 protein-coding Lrrc69 leucine rich repeat containing 69 NW_004955417 7875381 7969767 + 102015315 AGCD01018017;AGCD01018018;AGCD01018019;GBDF01082941;XM_005381774;XM_005381775;XM_005381776;XM_005381777 XP_005381831;XP_005381832;XP_005381833;XP_005381834 MODEL 10126313 ncrna LOC106148448 uncharacterized LOC106148448 NW_004955422 16731186 16739526 + 106148448 AGCD01022900;GBDI01158367;XR_001233891;XR_001233892 MODEL 9027868 ncrna LOC102020199 uncharacterized LOC102020199 NW_004955453 15979736 16061516 + 102020199 AGCD01044898;GBDI01367321;XR_262748;XR_262749 MODEL 8751367 protein-coding Nudt12 nudix hydrolase 12 ENCODES a protein that exhibits magnesium ion binding (ortholog); NAD+ diphosphatase activity (ortholog); NADH pyrophosphatase activity (ortholog); INVOLVED IN circadian regulation of gene expression (ortholog); mRNA catabolic process (ortholog); mRNA methylguanosine-cap decapping (ortholog); PARTICIPATES IN niacin metabolic pathway; FOUND IN cytoplasm (ortholog); nucleus (ortholog); peroxisome (ortholog) NW_004955418 10459644 10474124 + 102023597 AGCD01018979;GBCQ01065641;XM_005382181;XM_005382182;XM_005382183 XP_005382238;XP_005382239;XP_005382240 MODEL 8943819 pseudo LOC102024789 60S ribosomal protein L39 pseudogene NW_004955473 607646 607830 - 102024789 AGCD01053847;XM_005401201 MODEL 10124292 ncrna LOC106149651 uncharacterized LOC106149651 NW_004955451 15291481 15292365 - 106149651 AGCD01043604;GBDF01118188;XR_001235958 MODEL 8951005 ncrna LOC102022014 uncharacterized LOC102022014 NW_004955438 1658563 1664283 - 102022014 AGCD01034986;GBDF01119763;XR_001235138 MODEL 9067657 protein-coding Ttc28 tetratricopeptide repeat domain 28 ENCODES a protein that exhibits kinase binding (ortholog); INVOLVED IN regulation of mitotic cell cycle (ortholog); ASSOCIATED WITH Familial Prostate Cancer (ortholog); FOUND IN midbody (ortholog) NW_004955455 2322290 2964259 - 102021626 AGCD01045592;AGCD01045593;AGCD01045594;AGCD01045595;AGCD01045596;AGCD01045597;AGCD01045598;AGCD01045599;AGCD01045600;AGCD01045601;AGCD01045602;AGCD01045603;AGCD01045604;AGCD01045605;AGCD01045606;AGCD01045607;GBBH01113455;XM_013520304 XP_013375758 MODEL 8740164 pseudo LOC102020933 RING finger protein 122-like NW_004955424 7895833 7898165 + 102020933 AGCD01024444 MODEL 8994315 protein-coding Egflam EGF like, fibronectin type III and laminin G domains ENCODES a protein that exhibits glycosaminoglycan binding (ortholog); molecular adaptor activity (ortholog); INVOLVED IN extracellular matrix organization (ortholog); positive regulation of cell-substrate adhesion (ortholog); synapse assembly (ortholog); ASSOCIATED WITH High Myopia (ortholog); FOUND IN basement membrane (ortholog); cell surface (ortholog); extracellular matrix (ortholog) NW_004955426 22856515 23030517 + 102018622 AGCD01026627;AGCD01026628;AGCD01026629;AGCD01026630;AGCD01026631;AGCD01026632;GBDF01182451;XM_005386224 XP_005386281 MODEL 8752117 protein-coding LOC102029661 cysteine and histidine-rich domain-containing protein 1-like NW_004955529 3402475 3406087 + 102029661 AGCD01069791;XM_013507526 XP_013362980 MODEL 10377627 protein-coding LOC106146820 uncharacterized LOC106146820 NW_004955407 41502143 41511312 + 106146820 AGCD01007870;GBCE01010717;GBDF01188119;XM_013505439 XP_013360893 MODEL 10247320 ncrna LOC106147643 uncharacterized LOC106147643 NW_004955611 36279 37021 - 106147643 AGCD01077138;GBCE01129996;XR_001232577 MODEL 9066665 protein-coding Syt13 synaptotagmin 13 INVOLVED IN epithelial cell differentiation (ortholog); insulin secretion involved in cellular response to glucose stimulus (ortholog); regulation of cell cycle (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); breast cancer (ortholog); Cocaine-Related Disorders (ortholog); FOUND IN plasma membrane (ortholog); transport vesicle (ortholog) NW_004955422 2561660 2600863 + 102021018 AGCD01022485;AGCD01022486;AGCD01022487;GBDF01066237;XM_005384072 XP_005384129 MODEL 8754987 protein-coding Golt1b golgi transport 1B INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); FOUND IN endoplasmic reticulum (ortholog); protein-containing complex (ortholog) NW_004955413 17150261 17164108 + 102017757 AGCD01014130;GBCQ01176080;XM_005379060 XP_005379117 MODEL 9058031 pseudo LOC102016821 kinesin-associated protein 3-like NW_004955423 5460456 5464938 - 102016821 AGCD01023561 MODEL 10075246 ncrna LOC106149790 uncharacterized LOC106149790 NW_004955406 2410016 2422198 - 106149790 AGCD01005646;GBDF01290562;XR_001236184;XR_001236185;XR_001236186 MODEL 39132369 snrna U6 U6 spliceosomal RNA 8933653 ncrna LOC102016474 uncharacterized LOC102016474 NW_004955478 10412000 10415456 + 102016474 AGCD01056133;GBDF01003391;XR_263715 MODEL 10390690 protein-coding LOC106148860 translation initiation factor IF-2-like NW_004955431 6713371 6745760 + 106148860 AGCD01030064;AGCD01030065;GBBH01076747;XM_013515728 XP_013371182 MODEL 10228065 protein-coding LOC106150198 leucine-twenty homeobox-like NW_004955468 10972 13207 + 106150198 AGCD01051674;XM_013522283 XP_013377737 MODEL 10225534 ncrna LOC106147786 uncharacterized LOC106147786 NW_004955410 28618825 28635092 + 106147786 AGCD01011254;GBDF01235740;XR_001232748;XR_001232749 MODEL 10252608 protein-coding LOC106147380 olfactory receptor 11H6 NW_004955550 977805 978797 + 106147380 AGCD01072535;XM_013508550 XP_013364004 MODEL 8758501 protein-coding Tmem205 transmembrane protein 205 NW_004955495 2261287 2263244 - 102020458 AGCD01061760;GBCB01043145;XM_005405655;XM_005405656;XM_005405657;XM_005405658;XM_005405659 XP_005405712;XP_005405713;XP_005405714;XP_005405715;XP_005405716 MODEL 626189213 mirna MIRLET7A3 microRNA let-7a-3 10240076 ncrna LOC106148315 uncharacterized LOC106148315 NW_004955420 19915193 19923675 + 106148315 AGCD01021068;XR_001233655 MODEL 9040167 protein-coding CUNH10orf105 chromosome unknown C10orf105 homolog ASSOCIATED WITH autosomal recessive nonsyndromic deafness 12 (ortholog); Usher syndrome (ortholog) NW_004955437 19767395 19772447 + 102004321 AGCD01034865;GBDF01170530;XM_005390023;XM_005390024;XM_005390025;XM_005390026 XP_005390080;XP_005390081;XP_005390082;XP_005390083 MODEL 8711859 ncrna LOC102004093 uncharacterized LOC102004093 NW_004955506 3778930 3780204 - 102004093 AGCD01065319;GBDF01208779;XR_264347 MODEL 8831522 ncrna LOC102017222 uncharacterized LOC102017222 NW_004955470 3874997 3878837 - 102017222 AGCD01052712;GBDF01015388;XR_263469 MODEL 8905045 protein-coding Card11 caspase recruitment domain family member 11 ENCODES a protein that exhibits CARD domain binding (ortholog); INVOLVED IN B cell differentiation (ortholog); B cell proliferation (ortholog); canonical NF-kappaB signal transduction (ortholog); ASSOCIATED WITH adult T-cell leukemia/lymphoma (ortholog); asthma (ortholog); atopic dermatitis (ortholog); FOUND IN CBM complex (ortholog); cytoplasm (ortholog); immunological synapse (ortholog) NW_004955460 12368987 12487675 + 102010560 AGCD01048657;AGCD01048658;GBBH01126313;XM_005397859;XM_005397860;XM_005397861;XM_013521265;XM_013521266;XM_013521268;XM_013521269;XM_013521270;XM_013521271 XP_005397916;XP_005397917;XP_005397918;XP_013376719;XP_013376720;XP_013376722;XP_013376723;XP_013376724;XP_013376725 MODEL 8819094 protein-coding Neurod6 neuronal differentiation 6 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN dentate gyrus development (ortholog); positive regulation of transcription by RNA polymerase II (ortholog) NW_004955410 32408052 32411273 - 102025096 AGCD01011339;XM_005377515 XP_005377572 MODEL 10309715 ncrna LOC106149113 uncharacterized LOC106149113 NW_004955437 19370613 19372831 - 106149113 AGCD01034846;GBBH01008713;XR_001235076 MODEL 8841338 ncrna LOC102005164 uncharacterized LOC102005164 NW_004955432 18505196 18551305 - 102005164 AGCD01031143;AGCD01031144;AGCD01031145;AGCD01031146;AGCD01031147;GBDF01151735;XR_261533 MODEL 9059486 protein-coding Rpl8 ribosomal protein L8 ENCODES a protein that exhibits 5.8S rRNA binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN cellular response to nerve growth factor stimulus (ortholog); cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog) NW_004955454 3397893 3400275 + 102020754 AGCD01045073;AY533227;GBDF01002095;XM_005395938 AAS59429;XP_005395995 MODEL 8864262 protein-coding Gprc5d G protein-coupled receptor class C group 5 member D FOUND IN plasma membrane (ortholog) NW_004955413 9805848 9815616 - 102020899 AGCD01013913;XM_005378976;XM_005378977 XP_005379033;XP_005379034 MODEL 8836104 ncrna LOC102008088 uncharacterized LOC102008088 NW_004955415 25886988 25916316 - 102008088 AGCD01016587;GBBH01171947;XR_260315 MODEL 8984348 protein-coding LOC102029664 uncharacterized LOC102029664 NW_004955542 2555948 2561623 - 102029664 AGCD01071525;GBDJ01064202;XM_005411202 XP_005411259 MODEL 8979274 protein-coding LOC102013097 zinc finger protein 782 NW_004955422 23787215 23873788 - 102013097 AGCD01023206;AGCD01023207;AGCD01023208;AGCD01023209;AGCD01023210;GBBH01218955;XM_005384706;XM_013513992;XM_013513993;XM_013513994;XM_013513995;XM_013513996;XM_013513997;XM_013513998;XM_013513999;XM_013514000;XM_013514001;XM_013514002 XP_005384763;XP_013369446;XP_013369447;XP_013369448;XP_013369449;XP_013369450;XP_013369451;XP_013369452;XP_013369453;XP_013369454;XP_013369455;XP_013369456 MODEL 10078157 protein-coding LOC106149791 translation initiation factor IF-2-like NW_004955453 4671636 4672261 + 106149791 AGCD01044696;GBDF01085928;XM_013519953 XP_013375407 MODEL 8712202 ncrna LOC102020201 uncharacterized LOC102020201 NW_004955406 40111451 40112653 + 102020201 AGCD01006654;GBDF01027492;XR_259530 MODEL 39132371 snrna U6 U6 spliceosomal RNA 8935695 protein-coding Gon4l gon-4 like ENCODES a protein that exhibits transcription corepressor activity (ortholog); INVOLVED IN B cell differentiation (ortholog); negative regulation of DNA-templated transcription (ortholog); ASSOCIATED WITH Ependymomas (ortholog); intellectual disability (ortholog); Li-Takada-Miyake syndrome (ortholog); FOUND IN chromosome (ortholog); nuclear body (ortholog); nucleoplasm (ortholog) NW_004955545 1990202 2054614 - 102007701 AGCD01071878;AGCD01071879;AGCD01071880;AGCD01071881;AGCD01071882;GBDF01128223;XM_005411606;XM_005411607;XM_005411609;XM_013508237 XP_005411663;XP_005411664;XP_005411666;XP_013363691 MODEL 8918170 protein-coding Il17re interleukin 17 receptor E NW_004955561 1397286 1409999 + 102013018 AGCD01073855;GBDF01255893;XM_005413048;XM_005413049;XM_005413050 XP_005413105;XP_005413106;XP_005413107 MODEL 39132985 snrna U1 U1 spliceosomal RNA 10276414 ncrna LOC106149379 uncharacterized LOC106149379 NW_004955444 2571174 2573768 + 106149379 AGCD01038769;XR_001235526;XR_001235527 MODEL 8767633 protein-coding LOC102004820 olfactory receptor 13C9 NW_004955419 21786853 21787806 + 102004820 AGCD01020283;XM_005382787 XP_005382844 MODEL 8866917 protein-coding Nudt13 nudix hydrolase 13 ENCODES a protein that exhibits NADH pyrophosphatase activity (ortholog); FOUND IN mitochondrion (ortholog) NW_004955437 18572172 18591972 - 102022960 AGCD01034803;GBDF01253201;GBDF01253202;XM_005389995 XP_005390052 MODEL 10116221 ncrna LOC106149526 uncharacterized LOC106149526 NW_004955448 11183691 11192470 + 106149526 AGCD01041517;GBDF01287950;XR_001235771 MODEL 8716593 protein-coding Hdgf heparin binding growth factor ENCODES a protein that exhibits actin binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); heparin binding (ortholog); INVOLVED IN cellular response to interleukin-7 (ortholog); negative regulation of neuron apoptotic process (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH human immunodeficiency virus infectious disease (ortholog); FOUND IN cytoplasm (ortholog); extracellular region (ortholog); nucleoplasm (ortholog) NW_004955545 2819960 2831197 - 102009108 AGCD01071923;AGCD01071924;GBDI01008805;XM_005411700;XM_005411701 XP_005411757;XP_005411758 MODEL 8700387 protein-coding Dgkz diacylglycerol kinase zeta ENCODES a protein that exhibits ATP-dependent diacylglycerol kinase activity (ortholog); enzyme inhibitor activity (ortholog); kinase activity (ortholog); INVOLVED IN diacylglycerol metabolic process (ortholog); glycerolipid metabolic process (ortholog); lipid phosphorylation (ortholog); ASSOCIATED WITH autistic disorder (ortholog); genetic disease (ortholog); Hypoxia (ortholog); FOUND IN cytosol (ortholog); glutamatergic synapse (ortholog); lamellipodium (ortholog) NW_004955422 1658237 1687000 - 102009511 AGCD01022468;AGCD01022469;GBDI01006776;XM_005384031;XM_005384033;XM_005384035;XM_005384038;XM_013514024 XP_005384088;XP_005384090;XP_005384092;XP_005384095;XP_013369478 MODEL 8791447 ncrna LOC102023102 uncharacterized LOC102023102 NW_004955404 2801452 2805235 - 102023102 AGCD01003265;GBDF01287830;XR_259294 MODEL 8714690 protein-coding Ttc29 tetratricopeptide repeat domain 29 INVOLVED IN cilium movement (ortholog); cilium organization (ortholog); ASSOCIATED WITH spermatogenic failure 42 (ortholog); spermatogenic failure 5 (ortholog); FOUND IN sperm flagellum (ortholog); sperm principal piece (ortholog) NW_004955428 2378498 2571246 - 102011464 AGCD01027633;AGCD01027634;AGCD01027635;GBBH01076528;XM_005386666;XM_013515339;XM_013515340 XP_005386723;XP_013370793;XP_013370794 MODEL 8916402 protein-coding Rnf183 ring finger protein 183 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); INVOLVED IN positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway (ortholog); protein autoubiquitination (ortholog); protein polyubiquitination (ortholog); FOUND IN cis-Golgi network membrane (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955419 14181073 14189230 + 102023601 AGCD01020013;GBCQ01152724;XM_005382678;XM_005382679;XM_005382680;XM_013513137 XP_005382735;XP_005382736;XP_005382737;XP_013368591 MODEL 9012587 pseudo LOC102013497 programmed cell death protein 5 pseudogene NW_004955414 20055216 20055636 - 102013497 AGCD01015354 MODEL 8875762 pseudo LOC102017225 polypeptide N-acetylgalactosaminyltransferase 1-like NW_004955471 2742094 2743946 + 102017225 AGCD01053044 MODEL 8972231 protein-coding Nprl3 NPR3 like, GATOR1 complex subunit INVOLVED IN aorta morphogenesis (ortholog); cardiac muscle tissue development (ortholog); cellular response to amino acid starvation (ortholog); PARTICIPATES IN mTOR signaling pathway; ASSOCIATED WITH epilepsy (ortholog); familial focal epilepsy with variable foci 1 (ortholog); familial focal epilepsy with variable foci 3 (ortholog); FOUND IN GATOR1 complex (ortholog); lysosomal membrane (ortholog) NW_004955442 17025232 17068399 + 102008579 AGCD01037932;AGCD01037933;GBDF01088975;XM_005391678 XP_005391735 MODEL 10084159 ncrna LOC106148449 uncharacterized LOC106148449 NW_004955422 11545318 11547819 - 106148449 AGCD01022762;GBBH01205455;XR_001233897 MODEL 9057371 protein-coding Card14 caspase recruitment domain family member 14 ENCODES a protein that exhibits CARD domain binding (ortholog); INVOLVED IN negative regulation of apoptotic process (ortholog); positive regulation of protein phosphorylation (ortholog); tumor necrosis factor-mediated signaling pathway (ortholog); ASSOCIATED WITH Chediak-Higashi syndrome (ortholog); Familial Pityriasis Rubra Pilaris (ortholog); genetic disease (ortholog); FOUND IN CBM complex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955506 2711061 2744555 - 102019189 AGCD01065301;GBCE01013164;XM_013505979;XM_013505980;XM_013505981;XM_013505982;XM_013505983;XM_013505984;XM_013505985;XM_013505986;XM_013505987;XM_013505988 XP_013361433;XP_013361434;XP_013361435;XP_013361436;XP_013361437;XP_013361438;XP_013361439;XP_013361440;XP_013361441;XP_013361442 MODEL 8758567 protein-coding LOC102022737 trace amine-associated receptor 6 NW_004955436 13139545 13140576 + 102022737 AGCD01033854;XM_005389212 XP_005389269 MODEL 8712598 protein-coding Lrrc7 leucine rich repeat containing 7 ENCODES a protein that exhibits protein kinase binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN clustering of voltage-gated calcium channels (ortholog); positive regulation of neuron projection development (ortholog); regulation of long-term synaptic depression (ortholog); PARTICIPATES IN calcium/calmodulin dependent kinase 2 signaling pathway; ASSOCIATED WITH cocaine dependence (ortholog); Cocaine-Related Disorders (ortholog); intellectual disability (ortholog); FOUND IN actin cytoskeleton (ortholog); axon initial segment (ortholog); cytoplasm (ortholog) NW_004955423 21764046 22269590 - 102009075 AGCD01023948;AGCD01023949;AGCD01023950;AGCD01023951;AGCD01023952;AGCD01023953;AGCD01023954;AGCD01023955;AGCD01023956;AGCD01023957;AGCD01023958;AGCD01023959;AGCD01023960;AGCD01023961;GBCE01048900;XM_013514395;XM_013514396;XM_013514397 XP_013369849;XP_013369850;XP_013369851 MODEL 9060298 protein-coding Syt14 synaptotagmin 14 ENCODES a protein that exhibits identical protein binding (ortholog); phospholipid binding (ortholog); ASSOCIATED WITH autosomal recessive spinocerebellar ataxia 11 (ortholog); Spinocerebellar Ataxias (ortholog) NW_004955489 2017884 2275834 - 102019704 AGCD01059856;AGCD01059857;AGCD01059858;AGCD01059859;AGCD01059860;AGCD01059861;AGCD01059862;GBDF01276744;GBDF01276752;XM_013504506 XP_013359960 MODEL 8752585 pseudo LOC102016475 arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 pseudogene NW_004955416 20842499 20843310 + 102016475 AGCD01017471 MODEL 10296284 protein-coding LOC106148861 uncharacterized LOC106148861 NW_004955431 14375798 14458899 - 106148861 AGCD01030323;AGCD01030324;AGCD01030325;AGCD01030326;AGCD01030327;GBDF01149086;XM_013515732 XP_013371186 MODEL 10237270 pseudo LOC106147497 RNA-binding motif, single-stranded-interacting protein 1 pseudogene NW_004955568 1191751 1194361 + 106147497 AGCD01074543 MODEL 10349631 ncrna LOC106147787 uncharacterized LOC106147787 NW_004955410 31718726 31721075 + 106147787 AGCD01011330;GBCE01156387;XR_001232754 MODEL 10222185 ncrna LOC106150341 uncharacterized LOC106150341 NW_004955472 12842352 12849040 - 106150341 AGCD01053821;GBDI01202999;XR_001237099;XR_001237100 MODEL 8760666 protein-coding Gcn1 GCN1 activator of EIF2AK4 ENCODES a protein that exhibits molecular adaptor activity (ortholog); protein serine/threonine kinase activator activity (ortholog); stalled ribosome sensor activity (ortholog); INVOLVED IN cellular response to amino acid starvation (ortholog); GCN2-mediated signaling (ortholog); protein-RNA covalent cross-linking repair (ortholog); ASSOCIATED WITH fetal akinesia deformation sequence syndrome 1 (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic ribosome (ortholog) NW_004955455 11416222 11474791 + 102019773 AGCD01046004;AGCD01046005;AGCD01046006;GBDF01085355;XM_013520334 XP_013375788 MODEL 8943519 protein-coding CUNH10orf53 chromosome unknown C10orf53 homolog NW_004955556 625327 640289 - 102028025 AGCD01073178;GBBH01141531;XM_005412566 XP_005412623 MODEL 10215735 ncrna LOC106146821 uncharacterized LOC106146821 NW_004955497 2692778 2698468 - 106146821 AGCD01062513;XR_001231422 MODEL 8795990 protein-coding Egfr epidermal growth factor receptor ENCODES a protein that exhibits actin filament binding (ortholog); calmodulin binding (ortholog); chromatin binding (ortholog); INVOLVED IN astrocyte activation (ortholog); cell morphogenesis (ortholog); cell surface receptor signaling pathway (ortholog); PARTICIPATES IN altered epidermal growth factor/neuregulin signaling pathway; cetuximab pharmacodynamics pathway; E-cadherin signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Lung Injury (ortholog); adenocarcinoma (ortholog); FOUND IN apical plasma membrane (ortholog); basolateral plasma membrane (ortholog); cell junction (ortholog) NW_004955456 321222 456431 - 102003837 AGCD01046203;AGCD01046204;GBDJ01088996;XM_005396877 XP_005396934 MODEL 8768360 protein-coding Neurog1 neurogenin 1 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); E-box binding (ortholog); INVOLVED IN auditory behavior (ortholog); cell fate commitment (ortholog); cochlea development (ortholog); ASSOCIATED WITH CRANIAL DYSINNERVATION DISORDER, CONGENITAL, WITH ABSENT CORNEAL REFLEX AND DEVELOPMENTAL DELAY (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN neuronal cell body (ortholog); perikaryon (ortholog) NW_004955408 30693893 30695453 - 102009580 AGCD01008814;GBDF01152747;XM_005376476 XP_005376533 MODEL 10312363 ncrna LOC106149652 uncharacterized LOC106149652 NW_004955405 41503337 41508504 + 106149652 AGCD01005554;GBDJ01031652;XR_001235961 MODEL 8963997 protein-coding Gprc6a G protein-coupled receptor class C group 6 member A ENCODES a protein that exhibits G protein-coupled peptide receptor activity (ortholog); G protein-coupled receptor activity (ortholog); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); calcium-mediated signaling (ortholog); G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH disorder of sexual development (ortholog); FOUND IN cell surface (ortholog); plasma membrane (ortholog) NW_004955436 137809 159481 - 102006948 AGCD01033535;XM_005389118 XP_005389175 MODEL 8892710 pseudo LOC102029667 28S ribosomal protein S36, mitochondrial pseudogene NW_004955441 19479454 19481043 + 102029667 AGCD01037347;XM_005391021 MODEL 8799359 pseudo LOC102022375 putative olfactory receptor 10D4 NW_004955412 24725544 24726480 + 102022375 AGCD01013124 MODEL 8863145 protein-coding LOC102008089 cystatin-C-like NW_004955415 30698518 30701160 + 102008089 AGCD01016666;GBDJ01009478;XM_005380979 XP_005381036 MODEL 10112139 ncrna LOC106148450 uncharacterized LOC106148450 NW_004955422 543604 546960 + 106148450 AGCD01022415;GBDK01399123;XR_001233898 MODEL 39134325 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 626189212 mirna MIRLET7C microRNA let-7c 8732955 protein-coding Tmem208 transmembrane protein 208 FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955484 9396688 9398953 - 102008731 AGCD01058415;GBDJ01175780;XM_005403670 XP_005403727 MODEL 39132372 snrna U6 U6 spliceosomal RNA 10168026 ncrna LOC106148316 uncharacterized LOC106148316 NW_004955420 19905879 19908461 + 106148316 AGCD01021068;XR_001233656 MODEL 8782278 ncrna LOC102020934 uncharacterized LOC102020934 NW_004955425 15465355 15511571 + 102020934 AGCD01025582;GBDF01234167;XR_261146 MODEL 8821738 protein-coding Gon7 GON7 subunit of KEOPS complex INVOLVED IN tRNA threonylcarbamoyladenosine modification (ortholog); ASSOCIATED WITH Galloway-Mowat syndrome (ortholog); Galloway-Mowat syndrome 9 (ortholog); FOUND IN EKC/KEOPS complex (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955438 15319033 15321648 - 102004120 AGCD01035365;GBBH01060839;XM_005390343 XP_005390400 MODEL 8705696 protein-coding LOC102004828 olfactory receptor 2A12 NW_004955491 418194 419126 + 102004828 AGCD01060334;XM_005404724 XP_005404781 MODEL 9045669 protein-coding Lyzl4 lysozyme like 4 ENCODES a protein that exhibits lysozyme activity (ortholog); INVOLVED IN defense response to bacterium (ortholog); defense response to Gram-negative bacterium (ortholog); fertilization (ortholog); FOUND IN acrosomal vesicle (ortholog); extracellular region (ortholog); sperm flagellum (ortholog) NW_004955420 28333984 28344180 + 102030428 AGCD01021476;GBDF01003183;XM_005383547;XM_005383548 XP_005383604;XP_005383605 MODEL 10198710 protein-coding LOC106147644 butyrophilin subfamily 2 member A2-like NW_004955613 36439 60521 + 106147644 AGCD01077186;AGCD01077187;AGCD01077188;AGCD01077189;AGCD01077190;AGCD01077191;AGCD01077192;AGCD01077193;GBBH01227515;GBBH01227541;XM_013510131 XP_013365585 MODEL 10307030 ncrna LOC106149527 uncharacterized LOC106149527 NW_004955448 2546154 2553247 + 106149527 AGCD01041283;GBDF01141941;XR_001235773 MODEL 9054118 protein-coding Nudt14 nudix hydrolase 14 ENCODES a protein that exhibits ADP-glucose pyrophosphatase activity (ortholog); ADP-ribose diphosphatase activity (ortholog); identical protein binding (ortholog); FOUND IN cytosol (ortholog) NW_004955538 3444498 3450396 - 102004420 AGCD01071163;GBCE01001642;XM_005410856;XM_005410857 XP_005410913;XP_005410914 MODEL 10217460 ncrna LOC106149114 uncharacterized LOC106149114 NW_004955437 13558893 13561886 + 106149114 AGCD01034661;GBDK01118651;XR_001235078 MODEL 8960373 pseudo LOC102005166 cactin pseudogene NW_004955433 1837660 1843410 - 102005166 AGCD01031371 MODEL 8907162 pseudo LOC102016822 putative olfactory receptor 7A2 NW_004955495 8497094 8498105 - 102016822 AGCD01062213 MODEL 8883960 protein-coding LOC102013498 vomeronasal type-1 receptor 90-like NW_004955414 15078937 15087520 + 102013498 AGCD01015176;XM_005380444 XP_005380501 MODEL 10127700 protein-coding LOC106150199 translation initiation factor IF-2-like NW_004955468 147956 153266 - 106150199 AGCD01051683;AGCD01051684;GBBH01149661;GBDI01227640;XM_013522284 XP_013377738 MODEL 8789287 protein-coding Tmem209 transmembrane protein 209 FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); nuclear envelope (ortholog) NW_004955479 10822157 10859415 - 102013292 AGCD01056562;GBDK01361440;XM_005402423;XM_005402425;XM_005402429;XM_013503262;XM_013503263;XM_013503264;XM_013503265;XM_013503266;XM_013503267;XR_001230877 XP_005402480;XP_005402482;XP_005402486;XP_013358716;XP_013358717;XP_013358718;XP_013358719;XP_013358720;XP_013358721 MODEL 8896063 protein-coding LOC102024791 uncharacterized LOC102024791 NW_004955415 29381875 29412130 - 102024791 AGCD01016651;GBCE01045493;XM_005380956;XM_013512314;XM_013512315;XM_013512316;XR_001233233 XP_005381013;XP_013367768;XP_013367769;XP_013367770 MODEL 9048467 protein-coding Rnf185 ring finger protein 185 ENCODES a protein that exhibits protein-containing complex binding (ortholog); ubiquitin binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN defense response to virus (ortholog); ERAD pathway (ortholog); positive regulation of ERAD pathway (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); mitochondrial outer membrane (ortholog) NW_004955455 5351530 5394615 + 102005340 AGCD01045724;GBDF01128641;XM_005396299;XM_013520462;XM_013520463;XM_013520464 XP_005396356;XP_013375916;XP_013375917;XP_013375918 MODEL 8798603 pseudo LOC102013101 MICOS complex subunit MIC27 pseudogene NW_004955424 28108796 28113637 - 102013101 AGCD01025147 MODEL 8967801 protein-coding Card19 caspase recruitment domain family member 19 INVOLVED IN positive regulation of canonical NF-kappaB signal transduction (ortholog); protein catabolic process (ortholog); FOUND IN mitochondrion (ortholog) NW_004955515 4910621 4923815 - 102025036 AGCD01067332;AGCD01067333;GBCQ01122105;XM_005408899;XM_013506882 XP_005408956;XP_013362336 MODEL 8756554 protein-coding Lrrc70 leucine rich repeat containing 70 INVOLVED IN positive regulation of response to cytokine stimulus (ortholog); FOUND IN plasma membrane (ortholog) NW_004955446 6088863 6090306 - 102024859 AGCD01040087;GBDI01277956;XM_005415354 XP_005415411 MODEL 8903862 protein-coding Neurog2 neurogenin 2 ENCODES a protein that exhibits E-box binding (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN axon guidance (ortholog); cell fate commitment (ortholog); cell maturation (ortholog); FOUND IN nucleus (ortholog) NW_004955457 14268078 14287050 + 102005999 AGCD01047065;AGCD01047066;AGCD01047067;AGCD01047068;GBDI01318797;XM_013520669 XP_013376123 MODEL 8853681 protein-coding LOC102016479 histone H4 NW_004955483 808848 811799 - 102016479 AGCD01057632;GBDJ01338008;XM_005403295 XP_005403352 MODEL 10333406 ncrna LOC106148862 uncharacterized LOC106148862 NW_004955431 2171542 2204464 - 106148862 AGCD01029923;AGCD01029924;XR_001234576 MODEL 10353899 ncrna LOC106147498 uncharacterized LOC106147498 NW_004955568 121850 122561 + 106147498 AGCD01074503;GBCE01011332;XR_001232424 MODEL 8816121 protein-coding Il18 interleukin 18 ENCODES a protein that exhibits cytokine activity (ortholog); interleukin-18 receptor binding (ortholog); receptor ligand activity (ortholog); INVOLVED IN angiogenesis (ortholog); cell population proliferation (ortholog); cellular response to cAMP (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-23 signaling pathway; interleukin-27 signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); Acute Lung Injury (ortholog); alcoholic hepatitis (ortholog); FOUND IN apical plasma membrane (ortholog); decoy receptor complex (ortholog); extracellular region (ortholog) NW_004955412 13807361 13826007 - 102027829 AGCD01012846;GBCQ01010502;XM_005378111;XM_005378112 XP_005378168;XP_005378169 MODEL 8908110 protein-coding Gcna germ cell nuclear acidic peptidase ENCODES a protein that exhibits SUMO polymer binding (ortholog); INVOLVED IN protein-DNA covalent cross-linking repair (ortholog); ASSOCIATED WITH azoospermia (ortholog); spermatogenic failure 3 (ortholog); X-linked spermatogenic failure 4 (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); PML body (ortholog) NW_004955475 11111151 11145474 + 102029073 AGCD01055142;AGCD01055143;GBDF01007488;XM_005401708 XP_005401765 MODEL 8821282 protein-coding Ttc3 tetratricopeptide repeat domain 3 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN protein K48-linked ubiquitination (ortholog); ubiquitin-dependent protein catabolic process (ortholog); ASSOCIATED WITH Frontotemporal Dementia and/or Amyotrophic Lateral Sclerosis (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); nucleus (ortholog) NW_004955407 36175312 36307250 + 102014212 AGCD01007760;AGCD01007761;AGCD01007762;AGCD01007763;GBDF01251910;XM_013504664;XM_013504667;XM_013504668;XM_013504669;XM_013504671;XM_013504674 XP_013360118;XP_013360121;XP_013360122;XP_013360123;XP_013360125;XP_013360128 MODEL 9049819 protein-coding Dglucy D-glutamate cyclase ENCODES a protein that exhibits D-glutamate cyclase activity (ortholog); INVOLVED IN glutamate metabolic process (ortholog); FOUND IN cytosol (ortholog); mitochondrial matrix (ortholog); mitochondrion (ortholog) NW_004955438 13440883 13554969 + 102015449 AGCD01035286;AGCD01035287;AGCD01035288;AGCD01035289;AGCD01035290;AGCD01035291;AGCD01035292;AGCD01081645;GBCQ01129162;XM_013517220;XM_013517221;XM_013517222 XP_013372674;XP_013372675;XP_013372676 MODEL 8988463 pseudo LOC102017228 olfactory receptor 502-like NW_004955414 23588227 23604671 - 102017228 AGCD01015502;AGCD01015503;AGCD01015504;AGCD01015505 MODEL 39131340 protein-coding NPS neuropeptide S 8873123 pseudo LOC102022018 poly [ADP-ribose] polymerase 6 pseudogene NW_004955543 115943 118540 - 102022018 AGCD01071557 MODEL 8731647 protein-coding Vav2 vav guanine nucleotide exchange factor 2 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); phosphotyrosine residue binding (ortholog); INVOLVED IN cell migration (ortholog); lamellipodium assembly (ortholog); positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (ortholog); PARTICIPATES IN E-cadherin signaling pathway; ephrin - ephrin receptor bidirectional signaling axis; erythropoietin signaling pathway; FOUND IN cytoplasm (ortholog); plasma membrane (ortholog) NW_004955513 2985246 3121324 - 102022003 AGCD01066892;AGCD01066893;AGCD01066894;GBDI01121070;GBDK01142013;XM_005408459;XM_005408460 XP_005408516;XP_005408517 MODEL 8749874 pseudo LOC102020202 pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 1, mitochondrial pseudogene NW_004955406 12166989 12168622 + 102020202 AGCD01005909 MODEL 8740452 pseudo LOC102013499 superoxide dismutase [Cu-Zn] pseudogene NW_004955472 2854745 2855177 + 102013499 AGCD01053492 MODEL 9003787 protein-coding Egln1 egl-9 family hypoxia inducible factor 1 ENCODES a protein that exhibits 2-oxoglutarate-dependent dioxygenase activity (ortholog); enzyme binding (ortholog); enzyme inhibitor activity (ortholog); INVOLVED IN cardiac muscle tissue morphogenesis (ortholog); heart trabecula formation (ortholog); intracellular iron ion homeostasis (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); atherosclerosis (ortholog); dilated cardiomyopathy (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955492 7407800 7454851 + 102007130 AGCD01060797;AGCD01060798;GBCB01005053;GBCQ01067610;XM_005404970 XP_005405027 MODEL 39132988 snrna U1 U1 spliceosomal RNA 9038604 protein-coding LOC102022741 flocculation protein FLO11-like NW_004955532 1763410 1767680 - 102022741 AGCD01070200;GBDF01046501;XM_005410235 XP_005410292 MODEL 8790788 ncrna LOC102022380 uncharacterized LOC102022380 NW_004955471 5650960 5654958 + 102022380 AGCD01053108;GBDF01013412;XR_263524 MODEL 8707885 protein-coding Syt16 synaptotagmin 16 ENCODES a protein that exhibits identical protein binding (ortholog); phospholipid binding (ortholog) NW_004955466 7600990 7927710 - 102011187 AGCD01050959;AGCD01050960;AGCD01050961;AGCD01050962;AGCD01050963;AGCD01050964;AGCD01050965;AGCD01050966;AGCD01050967;AGCD01050968;AGCD01050969;AGCD01050970;AGCD01050971;AGCD01050972;AGCD01050973;GBDJ01218054;XM_013522016 XP_013377470 MODEL 9019974 protein-coding Hdgfl1 HDGF like 1 NW_004955483 4215060 4217150 - 102013507 AGCD01057734;GBDF01009191;XM_005403378 XP_005403435 MODEL 8986054 pseudo LOC102008093 calcium-binding protein 39 pseudogene NW_004955476 5340462 5341052 + 102008093 AGCD01055302 MODEL 39134326 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 10085714 ncrna LOC106150342 uncharacterized LOC106150342 NW_004955472 2673390 2679087 + 106150342 AGCD01053482;AGCD01053483;GBDI01215196;XR_001237103 MODEL 39132373 snrna U6 U6 spliceosomal RNA 9056905 protein-coding CUNH10orf62 chromosome unknown C10orf62 homolog NW_004955507 3691334 3692636 + 102028664 AGCD01065632;GBDK01273929;XM_005407615 XP_005407672 MODEL 8810221 protein-coding Rpl9 ribosomal protein L9 ENCODES a protein that exhibits structural constituent of ribosome (ortholog); INVOLVED IN cellular response to nerve growth factor stimulus (ortholog); cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Diamond-Blackfan anemia (ortholog); Sepsis (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog) NW_004955443 7907628 7912472 + 102026578 AGCD01038301;GBDF01008561;XM_005391980;XM_005391981;XM_013518071 XP_005392037;XP_005392038;XP_013373525 MODEL 10214245 protein-coding LOC106149792 uncharacterized LOC106149792 NW_004955453 1397744 1409504 + 106149792 AGCD01044612;GBDJ01398819;XM_013519954 XP_013375408 MODEL 10214958 protein-coding LOC106147381 olfactory receptor 11G2-like NW_004955550 938518 939523 + 106147381 AGCD01072530;XM_013508551 XP_013364005 MODEL 8838271 protein-coding Nudt15 nudix hydrolase 15 ENCODES a protein that exhibits 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity (ortholog); 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity (ortholog); 8-oxo-dGDP phosphatase activity (ortholog); INVOLVED IN dGTP catabolic process (ortholog); DNA protection (ortholog); mitotic cell cycle (ortholog); ASSOCIATED WITH leukopenia (ortholog); neutropenia (ortholog); pancytopenia (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955431 1767971 1775555 + 102013744 AGCD01029917;GBDF01038423;XM_005387551 XP_005387608 MODEL 9000032 ncrna LOC102004095 uncharacterized LOC102004095 NW_004955507 3788141 3791465 + 102004095 AGCD01065637;GBBH01163274;XR_001231638 MODEL 10074645 protein-coding LOC106149653 keratin-associated protein 1-3-like NW_004955451 15446109 15447042 - 106149653 AGCD01043607;XM_013519177 XP_013374631 MODEL 10158219 ncrna LOC106149380 uncharacterized LOC106149380 NW_004955444 1171891 1173028 + 106149380 AGCD01038715;GBBH01106769;XR_001235530 MODEL 8876231 protein-coding Tmem210 transmembrane protein 210 FOUND IN acrosomal vesicle (ortholog) NW_004955513 5180542 5181488 - 102005072 AGCD01066961;GBDJ01220531;XM_005408583 XP_005408640 MODEL 8952201 protein-coding Rnf186 ring finger protein 186 ENCODES a protein that exhibits ubiquitin protein ligase activity (ortholog); ubiquitin protein ligase binding (ortholog); ubiquitin-protein transferase activity (ortholog); INVOLVED IN intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); protein autoubiquitination (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955452 433413 450261 - 102014106 AGCD01043812;GBCQ01101625;XM_005394665 XP_005394722 MODEL 8928170 pseudo LOC102022019 52 kDa repressor of the inhibitor of the protein kinase-like NW_004955439 8849377 8852363 - 102022019 AGCD01035814;AGCD01035815 MODEL 8757043 ncrna LOC102023105 uncharacterized LOC102023105 NW_004955405 9650121 9655145 - 102023105 AGCD01004786;GBDF01146714;XR_001235294 MODEL 8884151 protein-coding LOC102020939 testis-expressed protein 19.2-like NW_004955506 801430 803792 + 102020939 AGCD01065236;XM_013505963;XM_013505964;XM_013505965 XP_013361417;XP_013361418;XP_013361419 MODEL 10142602 ncrna LOC106148863 uncharacterized LOC106148863 NW_004955431 2722423 2725497 - 106148863 AGCD01029938;XR_001234577 MODEL 8751816 protein-coding LOC102016481 arylacetamide deacetylase-like 4 NW_004955486 669925 732562 - 102016481 AGCD01058864;AGCD01058865;AGCD01058866;AGCD01058867;AGCD01058868;AGCD01058869;AGCD01058870;AGCD01058871;AGCD01058872;AGCD01058873;AGCD01058874;AGCD01058875;XM_005415332 XP_005415389 MODEL 10307015 protein-coding LOC106147645 erythroid membrane-associated protein-like NW_004955613 280426 289840 + 106147645 AGCD01077209;AGCD01077210;AGCD01077211;AGCD01077212;AGCD01077213;XM_013510134 XP_013365588 MODEL 9021859 protein-coding LOC102004831 olfactory receptor 4B1-like NW_004955422 329742 330700 + 102004831 AGCD01022404;XM_005384935 XP_005384992 MODEL 8716108 pseudo LOC102008096 60S ribosomal protein L6-like NW_004955477 11186663 11187511 - 102008096 AGCD01055719 MODEL 9067924 protein-coding Lyzl6 lysozyme like 6 INVOLVED IN defense response to bacterium (ortholog); fertilization (ortholog); fusion of sperm to egg plasma membrane involved in single fertilization (ortholog); FOUND IN cell surface (ortholog); extracellular region (ortholog); sperm midpiece (ortholog) NW_004955481 225132 273565 - 102028190 AGCD01056784;GBDF01000183;XM_005402553;XM_005402554;XM_005402556;XM_013503530;XM_013503531;XM_013503532;XM_013503533 XP_005402610;XP_005402611;XP_005402613;XP_013358984;XP_013358985;XP_013358986;XP_013358987 MODEL 8900542 protein-coding Gcnt1 glucosaminyl (N-acetyl) transferase 1 ENCODES a protein that exhibits beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN cell adhesion molecule production (ortholog); glycoprotein biosynthetic process (ortholog); kidney morphogenesis (ortholog); ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); Experimental Liver Cirrhosis (ortholog); Prostatic Neoplasms (ortholog); FOUND IN extracellular region (ortholog); Golgi cisterna (ortholog); Golgi membrane (ortholog) NW_004955512 2827321 2857777 - 102028781 AGCD01066690;GBBH01117760;XM_005408306;XM_005408307 XP_005408363;XP_005408364 MODEL 8750965 protein-coding Il18bp interleukin 18 binding protein ENCODES a protein that exhibits interleukin-18 binding (ortholog); INVOLVED IN cellular response to hydrogen peroxide (ortholog); cellular response to tumor necrosis factor (ortholog); response to lipopolysaccharide (ortholog); ASSOCIATED WITH alcoholic liver cirrhosis (ortholog); allergic contact dermatitis (ortholog); arteriosclerosis (ortholog); FOUND IN decoy receptor complex (ortholog); extracellular region (ortholog) NW_004955414 19327828 19332577 - 102006332 AGCD01015312;GBDI01016320;XM_005380020;XM_005380021;XM_005380022 XP_005380077;XP_005380078;XP_005380079 MODEL 8895009 protein-coding LOC102022746 polyamine-modulated factor 1 NW_004955545 2365047 2379720 + 102022746 AGCD01071898;GBCQ01129495;XM_005411660 XP_005411717 MODEL 8894547 protein-coding Dguok deoxyguanosine kinase ENCODES a protein that exhibits deoxyadenosine kinase activity (ortholog); deoxyguanosine kinase activity (ortholog); deoxynucleoside kinase activity (ortholog); INVOLVED IN dAMP salvage (ortholog); dGTP metabolic process (ortholog); mitochondrial ATP synthesis coupled electron transport (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 4 (ortholog); Cognitive Dysfunction (ortholog); Deoxyguanosine Kinase Deficiency (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955424 11739904 11773884 - 102007350 AGCD01024573;AGCD01024574;GBDI01313341;XM_005385533;XM_005385534 XP_005385590;XP_005385591 MODEL 10314282 pseudo LOC106150200 Krueppel-related zinc finger protein 1-like NW_004955468 1852519 1857791 + 106150200 AGCD01051784 MODEL 8889934 ncrna LOC102017232 uncharacterized LOC102017232 NW_004955477 6456388 6467350 + 102017232 AGCD01055610;GBDF01235237;XR_263661 MODEL 8726541 protein-coding LOC102029670 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4-like NW_004955442 12689424 12691146 - 102029670 AGCD01037745;XM_005391260 XP_005391317 MODEL 8897222 pseudo LOC102013103 nuclear receptor-binding factor 2 pseudogene NW_004955425 22838039 22839048 + 102013103 AGCD01025835 MODEL 8927885 ncrna LOC102004097 uncharacterized LOC102004097 NW_004955429 17006214 17015442 + 102004097 AGCD01028844;GBDJ01386401;XR_001234486;XR_001234487;XR_001234488;XR_001234489;XR_001234490;XR_261341;XR_261342;XR_261343;XR_261344;XR_261345;XR_261346;XR_261347 MODEL 10393158 ncrna LOC106149528 uncharacterized LOC106149528 NW_004955448 17891606 17910071 + 106149528 AGCD01041727;GBBH01182129;XR_001235780 MODEL 10276258 ncrna LOC106147499 uncharacterized LOC106147499 NW_004955408 25659454 25665560 - 106147499 AGCD01008649;GBDK01249518;XR_001232425;XR_001232426 MODEL 9011859 protein-coding Vav3 vav guanine nucleotide exchange factor 3 ENCODES a protein that exhibits epidermal growth factor receptor binding (ortholog); guanyl-nucleotide exchange factor activity (ortholog); INVOLVED IN B cell receptor signaling pathway (ortholog); cell migration (ortholog); DNA damage response (ortholog); PARTICIPATES IN ephrin - ephrin receptor bidirectional signaling axis; Fc epsilon receptor mediated signaling pathway; ASSOCIATED WITH hypertension (ortholog); Hyperventilation (ortholog); IgA glomerulonephritis (ortholog); FOUND IN cytoplasm (ortholog); immunological synapse (ortholog); plasma membrane (ortholog) NW_004955435 11326910 11599043 - 102017155 AGCD01033113;AGCD01033114;AGCD01033115;AGCD01033116;GBCE01181515;XM_013516527 XP_013371981 MODEL 9009386 pseudo LOC102005168 uncharacterized LOC102005168 NW_004955434 10798324 10816183 - 102005168 AGCD01032363;AGCD01032364;AGCD01032365 MODEL 10138041 protein-coding LOC106149115 leucine-rich repeat-containing protein C10orf11 homolog NW_004955437 16600328 16696696 - 106149115 AGCD01034703;AGCD01034704;AGCD01034705;GBBH01052101;GBDF01303616;XM_013516967 XP_013372421 MODEL 8819818 protein-coding Gopc golgi associated PDZ and coiled-coil motif containing ENCODES a protein that exhibits frizzled binding (ortholog); GTPase regulator activity (ortholog); identical protein binding (ortholog); INVOLVED IN negative regulation of anion channel activity (ortholog); negative regulation of protein localization to cell surface (ortholog); spermatid nucleus differentiation (ortholog); ASSOCIATED WITH atrial fibrillation (ortholog); azoospermia (ortholog); epilepsy (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955436 743616 777878 - 102022739 AGCD01033556;AGCD01033557;AGCD01033558;GBBH01227741;GBDF01080662;XM_013516616;XM_013516617 XP_013372070;XP_013372071 MODEL 39132374 snrna U6 U6 spliceosomal RNA 8922382 pseudo LOC102024792 MOB-like protein phocein pseudogene NW_004955475 5299692 5302058 - 102024792 AGCD01054911 MODEL 8735301 protein-coding Npsr1 neuropeptide S receptor 1 ENCODES a protein that exhibits neuropeptide receptor activity (ortholog); INVOLVED IN eating behavior (ortholog); negative regulation of defecation (ortholog); negative regulation of eating behavior (ortholog); ASSOCIATED WITH Alcoholic Intoxication (ortholog); allergic asthma (ortholog); allergic contact dermatitis (ortholog); FOUND IN cytoplasm (ortholog); plasma membrane (ortholog) NW_004955560 1069651 1243111 - 102023206 AGCD01073746;AGCD01073747;AGCD01073748;AGCD01073749;AGCD01073750;XM_005412989 XP_005413046 MODEL 8975117 protein-coding Ttc31 tetratricopeptide repeat domain 31 NW_004955424 11297666 11304937 - 102025813 AGCD01024561;GBDK01014863;XM_005385498;XM_005385499;XM_005385500;XM_013514655;XM_013514656 XP_005385555;XP_005385556;XP_005385557;XP_013370109;XP_013370110 MODEL 10095762 ncrna LOC106147788 uncharacterized LOC106147788 NW_004955410 32697094 32700568 + 106147788 AGCD01011348;GBDF01126735;XR_001232755 MODEL 10195709 ncrna LOC106148451 uncharacterized LOC106148451 NW_004955422 2795633 2797082 - 106148451 AGCD01022494;GBDF01016651;XR_001233900 MODEL 8947028 protein-coding Gprin1 G protein regulated inducer of neurite outgrowth 1 ENCODES a protein that exhibits phosphoprotein binding (ortholog); INVOLVED IN neuron projection development (ortholog); FOUND IN plasma membrane (ortholog) NW_004955408 28871379 28884961 - 102014645 AGCD01008733;GBDF01067460;XM_005376391;XM_005376392;XM_005376393 XP_005376448;XP_005376449;XP_005376450 MODEL 8775674 protein-coding LOC102008105 translation initiation factor IF-2-like NW_004955481 3628568 3637628 - 102008105 AGCD01056909;GBDI01140316;XM_005402923 XP_005402980 MODEL 10140009 ncrna LOC106149793 uncharacterized LOC106149793 NW_004955453 4022338 4028300 - 106149793 AGCD01044672;GBDF01014003;XR_001236188 MODEL 626189141 mirna MIRLET7D microRNA let-7d 10345881 protein-coding Card6 caspase recruitment domain family member 6 INVOLVED IN cholesterol efflux (ortholog); cholesterol import (ortholog); foam cell differentiation (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytoplasm (ortholog) NW_004955426 25123436 25132198 + 106148678 AGCD01026702;GBDJ01358613;XM_013514977 XP_013370431 MODEL 39131393 protein-coding NEUROG2 neurogenin 2 10323096 ncrna LOC106149654 uncharacterized LOC106149654 NW_004955451 15711631 15723922 + 106149654 AGCD01043634;AGCD01043635;GBDI01085972;XR_001235963;XR_001235964 MODEL 10311739 ncrna LOC106148317 uncharacterized LOC106148317 NW_004955420 1983040 2014336 - 106148317 AGCD01020585;AGCD01020586;XR_001233657 MODEL 8726228 ncrna LOC102013501 uncharacterized LOC102013501 NW_004955473 5281173 5291335 + 102013501 AGCD01053974;GBDI01312184;XR_001237117;XR_263581 MODEL 8935810 protein-coding Lrrc71 leucine rich repeat containing 71 NW_004955545 2977829 2988520 + 102015350 AGCD01071930;GBDI01070693;XM_005411725;XM_005411726;XM_005411729;XM_005411730;XM_005411731;XM_013508285;XM_013508287;XM_013508288;XM_013508289;XM_013508290 XP_005411782;XP_005411783;XP_005411786;XP_005411787;XP_005411788;XP_013363739;XP_013363741;XP_013363742;XP_013363743;XP_013363744 MODEL 10273537 ncrna LOC106149381 uncharacterized LOC106149381 NW_004955444 3414729 3470676 - 106149381 AGCD01038790;AGCD01038791;GBCE01069796;XR_001235533 MODEL 39132990 snrna U1 U1 spliceosomal RNA 39134327 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 8858898 pseudo LOC102023107 corepressor interacting with RBPJ 1 pseudogene NW_004955405 17684218 17787002 - 102023107 AGCD01005002;AGCD01005003;AGCD01005004;AGCD01005005;AGCD01005006;AGCD01005007;AGCD01005008 MODEL 8950889 ncrna LOC102016824 uncharacterized LOC102016824 NW_004955497 3774571 3784353 + 102016824 AGCD01062556;GBDF01049814;XR_001231426;XR_001231427;XR_264202 MODEL 8881823 protein-coding Hdgfl2 HDGF like 2 ENCODES a protein that exhibits chromatin binding (ortholog); histone H3K27me3 reader activity (ortholog); histone H3K9me2/3 reader activity (ortholog); INVOLVED IN DNA repair-dependent chromatin remodeling (ortholog); muscle cell differentiation (ortholog); positive regulation of cell growth (ortholog); FOUND IN cytoplasm (ortholog); nucleoplasm (ortholog); nucleus (ortholog) NW_004955495 4426929 4447276 - 102006928 AGCD01061922;AGCD01061923;GBDF01087580;GBDK01016904;XM_013505188;XM_013505189;XM_013505190 XP_013360642;XP_013360643;XP_013360644 MODEL 10208038 pseudo LOC106150343 lysine-rich coiled-coil protein 1-like NW_004955472 7688506 7690382 + 106150343 AGCD01053625 MODEL 8754149 protein-coding LOC102013106 centrin-4-like NW_004955428 17966176 17970742 + 102013106 AGCD01028055;GBCQ01125606;XM_005386762;XM_005386763 XP_005386819;XP_005386820 MODEL 8968002 protein-coding CUNH10orf71 chromosome unknown C10orf71 homolog INVOLVED IN positive regulation of calcineurin-NFAT signaling cascade (ortholog); ASSOCIATED WITH dilated cardiomyopathy (ortholog); FOUND IN Z disc (ortholog) NW_004955556 894707 917196 - 102003387 AGCD01073179;GBCB01007197;XM_005412570;XM_005412571;XM_005412572 XP_005412627;XP_005412628;XP_005412629 MODEL 10222028 ncrna LOC106148864 uncharacterized LOC106148864 NW_004955404 2375097 2386946 - 106148864 AGCD01003257;GBCE01026025;XR_001234584;XR_001234585 MODEL 10157382 ncrna LOC106147646 uncharacterized LOC106147646 NW_004955613 1083 8258 + 106147646 AGCD01077183;XR_001232579 MODEL 9023633 protein-coding Rplp0 ribosomal protein lateral stalk subunit P0 ENCODES a protein that exhibits peptide binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to interleukin-4 (ortholog); cellular response to phorbol 13-acetate 12-myristate (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Down syndrome (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic ribonucleoprotein granule (ortholog); cytosol (ortholog) NW_004955455 11404898 11409262 + 102014640 AGCD01046003;GBDJ01024840;XM_005396518 XP_005396575 MODEL 10091045 ncrna LOC106147383 uncharacterized LOC106147383 NW_004955550 1245880 1253868 + 106147383 AGCD01072557;AGCD01072558;GBCB01010548;XR_001232259;XR_001232260;XR_001232261;XR_001232262 MODEL 8709846 protein-coding Nudt16 nudix hydrolase 16 ENCODES a protein that exhibits 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity (ortholog); chloride ion binding (ortholog); cobalt ion binding (ortholog); INVOLVED IN chromosome organization (ortholog); dITP catabolic process (ortholog); mRNA catabolic process (ortholog); ASSOCIATED WITH COVID-19 (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN cytoplasm (ortholog); nucleolus (ortholog); nucleoplasm (ortholog) NW_004955501 7083068 7085505 - 102009297 AGCD01064204;GBDF01144639;XM_005406842 XP_005406899 MODEL 8797341 protein-coding Egln2 egl-9 family hypoxia inducible factor 2 ENCODES a protein that exhibits 2-oxoglutarate-dependent dioxygenase activity (ortholog); ferrous iron binding (ortholog); hypoxia-inducible factor-proline dioxygenase activity (ortholog); INVOLVED IN cell redox homeostasis (ortholog); peptidyl-proline hydroxylation to 4-hydroxy-L-proline (ortholog); positive regulation of protein catabolic process (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH renal cell carcinoma (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955578 541723 557609 - 102003188 AGCD01075488;AGCD01075489;GBDK01016596;XM_005414013;XM_005414014;XR_265083 XP_005414070;XP_005414071 MODEL 8783160 protein-coding Tmem212 transmembrane protein 212 NW_004955420 1931855 1961957 + 102027984 AGCD01020583;AGCD01020584;GBBH01031234;XM_005383003;XR_260678 XP_005383060 MODEL 8844157 protein-coding LOC102017244 zinc finger protein 878-like NW_004955487 192974 209169 - 102017244 AGCD01059214;GBBH01045988;XM_013504335 XP_013359789 MODEL 8909928 protein-coding Rnf187 ring finger protein 187 ENCODES a protein that exhibits ubiquitin-protein transferase activity (ortholog); INVOLVED IN positive regulation of cell population proliferation (ortholog); positive regulation of DNA-templated transcription (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955581 74876 82915 - 102021818 AGCD01075656;AGCD01075657;GBCB01085848;GBCE01081698;XM_013509721 XP_013365175 MODEL 8716984 protein-coding Dhcr24 24-dehydrocholesterol reductase ENCODES a protein that exhibits Delta24(24-1) sterol reductase activity (ortholog); Delta24-sterol reductase activity (ortholog); enzyme binding (ortholog); INVOLVED IN amyloid precursor protein catabolic process (ortholog); cholesterol biosynthetic process (ortholog); cholesterol biosynthetic process via desmosterol (ortholog); PARTICIPATES IN alendronate pharmacodynamics pathway; cholesterol biosynthetic pathway; cholesterol ester storage disease pathway; ASSOCIATED WITH Alzheimer's disease (ortholog); autism spectrum disorder (ortholog); COVID-19 (ortholog); FOUND IN endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog); Golgi membrane (ortholog) NW_004955464 4533928 4557893 + 102024198 AGCD01049992;GBCE01031278;XM_005398508 XP_005398565 MODEL 8752163 protein-coding Syt17 synaptotagmin 17 INVOLVED IN positive regulation of dendrite extension (ortholog); regulation of postsynaptic neurotransmitter receptor internalization (ortholog); FOUND IN glutamatergic synapse (ortholog); postsynapse (ortholog); trans-Golgi network (ortholog) NW_004955442 2843143 2921627 - 102004205 AGCD01037482;AGCD01037483;AGCD01037484;AGCD01037485;AGCD01037486;GBCE01114097;GBCQ01058207;XM_005391093 XP_005391150 MODEL 10168792 ncrna LOC106148318 uncharacterized LOC106148318 NW_004955420 2055102 2063332 + 106148318 AGCD01020586;GBCB01029553;XR_001233658 MODEL 10173870 ncrna LOC106149529 uncharacterized LOC106149529 NW_004955448 6907649 6911130 + 106149529 AGCD01041396;GBDJ01297958;XR_001235781;XR_001235782 MODEL 8716606 protein-coding Card9 caspase recruitment domain family member 9 ENCODES a protein that exhibits CARD domain binding (ortholog); identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN antifungal innate immune response (ortholog); apoptotic signaling pathway (ortholog); defense response to Gram-positive bacterium (ortholog); ASSOCIATED WITH ankylosing spondylitis (ortholog); genetic disease (ortholog); IgA glomerulonephritis (ortholog); FOUND IN CBM complex (ortholog); cytoplasm (ortholog); protein-containing complex (ortholog) NW_004955513 4350873 4359345 + 102010082 AGCD01066927;GBBH01090040;XM_005408509;XM_013506614;XM_013506615;XM_013506616 XP_005408566;XP_013362068;XP_013362069;XP_013362070 MODEL 10247577 ncrna LOC106149382 uncharacterized LOC106149382 NW_004955444 3498091 3506160 + 106149382 AGCD01038791;GBDF01281836;XR_001235534 MODEL 8950630 ncrna LOC102005172 uncharacterized LOC102005172 NW_004955436 16334399 16358588 + 102005172 AGCD01033914;AGCD01033915;GBDK01148627;XR_001234980 MODEL 10185753 ncrna LOC106147501 uncharacterized LOC106147501 NW_004955569 1585930 1589649 - 106147501 AGCD01074671;GBDJ01218452;XR_001232428 MODEL 8781916 ncrna LOC102004832 uncharacterized LOC102004832 NW_004955495 4237269 4239443 - 102004832 AGCD01061905;XR_264150 MODEL 8839192 ncrna LOC102020203 uncharacterized LOC102020203 NW_004955407 4537146 4561971 - 102020203 AGCD01006881;AGCD01006882;AGCD01006883;GBDF01039252;XR_001230969;XR_259548 MODEL 8828143 protein-coding Gcnt3 glucosaminyl (N-acetyl) transferase 3, mucin type ENCODES a protein that exhibits acetylgalactosaminyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity (ortholog); N-acetyllactosaminide beta-1,6-N-acetylglucosaminyltransferase activity (ortholog); INVOLVED IN intestinal absorption (ortholog); kidney morphogenesis (ortholog); tissue morphogenesis (ortholog) NW_004955450 15204502 15211747 - 102012263 AGCD01042785;GBDF01013134;XM_005393829;XM_005393830;XM_005393831;XM_013519008 XP_005393886;XP_005393887;XP_005393888;XP_013374462 MODEL 8889247 pseudo LOC102022383 cytochrome c oxidase subunit 7A2, mitochondrial pseudogene NW_004955414 28884771 28926524 + 102022383 AGCD01015691;AGCD01015692;AGCD01015693;AGCD01015694;AGCD01015695;AGCD01015696;AGCD01015697 MODEL 8959579 protein-coding CUNH10orf88 chromosome unknown C10orf88 homolog ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); FOUND IN cytoplasm (ortholog); mitochondrion (ortholog) NW_004955477 1127067 1141360 - 102024111 AGCD01055503;GBDI01055762;XM_005401951 XP_005402008 MODEL 8865238 ncrna LOC102022020 uncharacterized LOC102022020 NW_004955440 13712668 13726570 + 102022020 AGCD01036452;GBDF01045531;XR_262020;XR_262021 MODEL 10299657 ncrna LOC106146822 uncharacterized LOC106146822 NW_004955497 1138262 1140735 + 106146822 AGCD01062452;XR_001231428 MODEL 8828792 protein-coding Ttc32 tetratricopeptide repeat domain 32 NW_004955469 2461559 2466793 - 102011105 AGCD01052276;GBDF01194304;XM_005400338 XP_005400395 MODEL 10361918 pseudo LOC106147789 protein slowmo homolog 2 pseudogene NW_004955402 34871679 34872827 + 106147789 AGCD01000873 MODEL 626189142 mirna MIRLET7F1 microRNA let-7f-1 8700349 ncrna LOC102008106 uncharacterized LOC102008106 NW_004955482 4507858 4511301 + 102008106 AGCD01057294;GBDF01156183;XR_001230999 MODEL 8752160 protein-coding LOC102004099 olfactory receptor 8K5-like NW_004955511 1397789 1398727 + 102004099 AGCD01066366;XM_005407960 XP_005408017 MODEL 8787595 protein-coding Tmem213 transmembrane protein 213 FOUND IN endoplasmic reticulum membrane (ortholog) NW_004955494 4170557 4176088 - 102003460 AGCD01061493;GBCQ01007897;XM_013505030 XP_013360484 MODEL 39132993 snrna U1 U1 spliceosomal RNA 8889235 protein-coding Lrrc72 leucine rich repeat containing 72 NW_004955410 19714223 19774630 + 102022368 AGCD01011030;GBDF01004934;XM_005377335 XP_005377392 MODEL 9022121 pseudo LOC102016825 serine/threonine/tyrosine-interacting protein-like NW_004955502 7914989 7918326 + 102016825 AGCD01064467 MODEL 39132375 snrna U6 U6 spliceosomal RNA 8757332 protein-coding Gorab golgin, RAB6 interacting ENCODES a protein that exhibits protein-macromolecule adaptor activity (ortholog); INVOLVED IN hair follicle morphogenesis (ortholog); non-motile cilium assembly (ortholog); positive regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH genetic disease (ortholog); geroderma osteodysplasticum (ortholog); osteoporosis (ortholog); FOUND IN cytoplasm (ortholog); Golgi apparatus (ortholog); trans-Golgi network (ortholog) NW_004955462 6807618 6824296 + 102006321 AGCD01049289;GBDI01026297;XM_005398171 XP_005398228 MODEL 8938904 protein-coding Dhcr7 7-dehydrocholesterol reductase ENCODES a protein that exhibits 7-dehydrocholesterol reductase activity (ortholog); cholesterol-5,6-oxide hydrolase activity (ortholog); oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor (ortholog); INVOLVED IN blood vessel development (ortholog); cell differentiation (ortholog); cholesterol biosynthetic process (ortholog); PARTICIPATES IN cholesterol biosynthetic pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); Animal Disease Models (ortholog); autistic disorder (ortholog); FOUND IN endoplasmic reticulum (ortholog); nuclear outer membrane (ortholog) NW_004955422 15119155 15136771 + 102016485 AGCD01022876;GBCE01123738;XM_005384227;XM_005384228;XM_005384229;XM_013514319 XP_005384284;XP_005384285;XP_005384286;XP_013369773 MODEL 8962711 ncrna LOC102013107 uncharacterized LOC102013107 NW_004955429 13692856 13696410 + 102013107 AGCD01028762;GBDF01283174;XR_261329 MODEL 8924667 protein-coding Il18r1 interleukin 18 receptor 1 ENCODES a protein that exhibits interleukin-18 binding (ortholog); interleukin-18 receptor activity (ortholog); INVOLVED IN interleukin-18-mediated signaling pathway (ortholog); natural killer cell activation (ortholog); negative regulation of cold-induced thermogenesis (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-23 signaling pathway; ASSOCIATED WITH aortic dissection (ortholog); asthma (ortholog); autoimmune disease (ortholog); FOUND IN interleukin-18 receptor complex (ortholog); membrane (ortholog) NW_004955470 7854995 7887810 + 102020793 AGCD01052814;AGCD01052815;GBBH01123228;XM_005400769;XM_005400770;XM_013522841 XP_005400826;XP_005400827;XP_013378295 MODEL 8788237 protein-coding LOC102029676 zinc finger protein 709 NW_004955569 659674 681841 + 102029676 AGCD01074607;AGCD01074608;AGCD01074609;AGCD01074610;GBCB01101026;XM_013509370 XP_013364824 MODEL 10348597 protein-coding LOC106147647 translation initiation factor IF-2-like NW_004955617 303857 318472 - 106147647 AGCD01077276;GBDF01048722;XM_013510141 XP_013365595 MODEL 10083149 ncrna LOC106148452 uncharacterized LOC106148452 NW_004955422 11222010 11229990 + 106148452 AGCD01022752;XR_001233901 MODEL 8938883 protein-coding Gprin2 G protein regulated inducer of neurite outgrowth 2 NW_004955510 6141516 6155372 + 102014592 AGCD01066302;AGCD01066303;GBCE01107160;XM_005407914;XM_005407915;XM_005407916;XM_005407917;XM_013506342;XM_013506343;XM_013506344 XP_005407971;XP_005407972;XP_005407973;XP_005407974;XP_013361796;XP_013361797;XP_013361798 MODEL 9016817 protein-coding Neurog3 neurogenin 3 ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN enteroendocrine cell differentiation (ortholog); epithelial cell differentiation (ortholog); forebrain development (ortholog); ASSOCIATED WITH congenital malabsorptive diarrhea 4 (ortholog); Experimental Diabetes Mellitus (ortholog); genetic disease (ortholog); FOUND IN nucleus (ortholog) NW_004955437 21577896 21578546 + 102020608 AGCD01034911;XM_005390082 XP_005390139 MODEL 10227170 ncrna LOC106149655 uncharacterized LOC106149655 NW_004955405 42033279 42035671 - 106149655 AGCD01005576;GBDJ01254658;XR_001235966 MODEL 10236597 ncrna LOC106150344 uncharacterized LOC106150344 NW_004955472 12739492 12743856 + 106150344 AGCD01053814;GBDJ01139285;XR_001237105 MODEL 8806961 ncrna LOC102023108 uncharacterized LOC102023108 NW_004955453 16715278 16718568 + 102023108 AGCD01044910;GBDF01285863;XR_262757 MODEL 8707681 protein-coding Hdgfl3 HDGF like 3 ENCODES a protein that exhibits microtubule binding (ortholog); tubulin binding (ortholog); INVOLVED IN microtubule polymerization (ortholog); negative regulation of microtubule depolymerization (ortholog); neuron projection development (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleoplasm (ortholog) NW_004955416 13501132 13561095 + 102003763 AGCD01017225;AGCD01017226;GBDF01050153;XM_005381466;XM_013512568 XP_005381523;XP_013368022 MODEL 9013619 pseudo LOC102022751 protein kinase C iota type-like NW_004955561 1157274 1161309 - 102022751 AGCD01073839;AGCD01073840 MODEL 8751965 protein-coding LOC102024798 protein FAM170A-like NW_004955481 10374223 10424005 + 102024798 AGCD01057145;AGCD01057146;AGCD01057147;AGCD01057148;GBDF01089303;XM_005402934;XM_013503341;XM_013503342;XM_013503343;XM_013503344;XR_001230912;XR_001230913 XP_005402991;XP_013358795;XP_013358796;XP_013358797;XP_013358798 MODEL 10360302 ncrna LOC106149383 uncharacterized LOC106149383 NW_004955444 1435473 1449309 + 106149383 AGCD01038725;GBCB01010027;XR_001235535 MODEL 10203558 ncrna LOC106149530 uncharacterized LOC106149530 NW_004955448 8211175 8241615 + 106149530 AGCD01041437;AGCD01041438;GBDF01198097;XR_001235783 MODEL 10315929 ncrna LOC106147502 uncharacterized LOC106147502 NW_004955569 1128461 1130913 - 106147502 AGCD01074640;GBDF01074837;XR_001232429 MODEL 10165575 ncrna LOC106147384 uncharacterized LOC106147384 NW_004955408 5966487 5969357 + 106147384 AGCD01008161;GBBH01175224;XR_001232263 MODEL 8893791 protein-coding LOC102013509 uncharacterized LOC102013509 NW_004955485 6368092 6370491 + 102013509 AGCD01058616;XM_005403920 XP_005403977 MODEL 8980250 protein-coding LOC102020940 zinc finger protein 14-like NW_004955429 18186043 18211596 - 102020940 AGCD01028884;AGCD01028885;AGCD01028886;GBCB01034512;XM_005387112;XM_005387113 XP_005387169;XP_005387170 MODEL 8827124 protein-coding Nudt16l1 nudix hydrolase 16 like 1 ENCODES a protein that exhibits 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity (ortholog); protein homodimerization activity (ortholog); snoRNA binding (ortholog); INVOLVED IN negative regulation of double-strand break repair via nonhomologous end joining (ortholog); PARTICIPATES IN syndecan signaling pathway; FOUND IN nucleus (ortholog) NW_004955442 12761962 12777549 - 102005307 AGCD01037745;GBDI01155744;XM_005391273;XM_005391274;XM_005391275;XM_013517719;XM_013517720 XP_005391330;XP_005391331;XP_005391332;XP_013373173;XP_013373174 MODEL 9063433 protein-coding Gcnt4 glucosaminyl (N-acetyl) transferase 4 INVOLVED IN homeostasis of number of cells (ortholog); inter-male aggressive behavior (ortholog); kidney morphogenesis (ortholog); FOUND IN Golgi apparatus (ortholog) NW_004955425 25661648 25681948 + 102027426 AGCD01025927;GBCQ01026024;XM_005386055;XM_005386056;XM_013514799;XM_013514800 XP_005386112;XP_005386113;XP_013370253;XP_013370254 MODEL 10141145 pseudo LOC106146823 BRCA2 and CDKN1A-interacting protein pseudogene NW_004955497 7517226 7536870 - 106146823 AGCD01062680;AGCD01062681 MODEL 39131327 protein-coding RNF187 ring finger protein 187 8702607 protein-coding LOC102022022 olfactory receptor 4K2-like NW_004955550 506630 507583 - 102022022 AGCD01072509;XM_005412132 XP_005412189 MODEL 8843732 protein-coding Egln3 egl-9 family hypoxia inducible factor 3 ENCODES a protein that exhibits 2-oxoglutarate-dependent dioxygenase activity (ortholog); hypoxia-inducible factor-proline dioxygenase activity (ortholog); peptidyl-proline 4-dioxygenase activity (ortholog); INVOLVED IN cellular response to leukemia inhibitory factor (ortholog); negative regulation of ferroptosis (ortholog); protein hydroxylation (ortholog); PARTICIPATES IN hypoxia inducible factor pathway; vascular endothelial growth factor signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); clear cell renal cell carcinoma (ortholog); Kidney Reperfusion Injury (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); nucleus (ortholog) NW_004955409 26939933 26967156 + 102007741 AGCD01010203;GBCQ01004650;XM_005376943 XP_005377000 MODEL 8938363 protein-coding Vax1 ventral anterior homeobox 1 ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA-binding transcription factor activity (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); INVOLVED IN axon guidance (ortholog); brain development (ortholog); camera-type eye development (ortholog); ASSOCIATED WITH microphthalmia (ortholog); syndromic microphthalmia 11 (ortholog); FOUND IN nucleus (ortholog) NW_004955431 21853636 21857547 - 102019725 AGCD01030503;AGCD01030504;XM_005387908 XP_005387965 MODEL 10296302 ncrna LOC106149116 uncharacterized LOC106149116 NW_004955437 16020548 16021231 + 106149116 AGCD01034698;XR_001235079 MODEL 8869504 pseudo LOC102008107 olfactory receptor 56-like NW_004955418 29732474 29747780 + 102008107 AGCD01019481 MODEL 10376185 ncrna LOC106148319 uncharacterized LOC106148319 NW_004955420 627760 641994 + 106148319 AGCD01020550;XR_001233659 MODEL 8856663 protein-coding LOC102004101 olfactory receptor 5D18-like NW_004955511 575528 576477 - 102004101 AGCD01066333;XM_013506420 XP_013361874 MODEL 10383204 ncrna LOC106148865 uncharacterized LOC106148865 NW_004955431 16806473 16875412 - 106148865 AGCD01030394;AGCD01030395;AGCD01030396;AGCD01030397;AGCD01030398;GBDI01281076;XR_001234586 MODEL 39131323 protein-coding TMEM213 transmembrane protein 213 8915404 protein-coding Lrrc73 leucine rich repeat containing 73 NW_004955437 9337538 9340360 - 102010522 AGCD01034526;GBCQ01031442;XM_005389777 XP_005389834 MODEL 8841218 protein-coding Carf calcium responsive transcription factor ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to calcium ion (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH coronary artery disease (ortholog); FOUND IN granular component (ortholog); nucleus (ortholog) NW_004955457 11853256 11947909 - 102003414 AGCD01046988;AGCD01046989;AGCD01046990;AGCD01046991;AGCD01046992;AGCD01046993;AGCD01046994;AGCD01046995;AGCD01046996;GBDF01253627;XM_013520701;XM_013520702;XM_013520703;XM_013520704;XM_013520705;XM_013520706;XM_013520707;XM_013520708;XM_013520709;XM_013520710;XM_013520711;XM_013520712;XM_013520713;XM_013520714 XP_013376155;XP_013376156;XP_013376157;XP_013376158;XP_013376159;XP_013376160;XP_013376161;XP_013376162;XP_013376163;XP_013376164;XP_013376165;XP_013376166;XP_013376167;XP_013376168 MODEL 9041985 protein-coding LOC102020204 low affinity sodium-glucose cotransporter-like NW_004955455 6532784 6667672 - 102020204 AGCD01045801;AGCD01045802;AGCD01045803;GBDF01138871;XM_013520389;XM_013520390 XP_013375843;XP_013375844 MODEL 8753777 protein-coding Gorasp1 golgi reassembly stacking protein 1 INVOLVED IN establishment of protein localization to plasma membrane (ortholog); Golgi organization (ortholog); Golgi ribbon formation (ortholog); FOUND IN endoplasmic reticulum-Golgi intermediate compartment membrane (ortholog); Golgi apparatus (ortholog) NW_004955427 24862253 24873710 + 102027553 AGCD01027524;AGCD01027525;GBDF01050822;XM_005386568;XM_013515076;XM_013515077 XP_005386625;XP_013370530;XP_013370531 MODEL 8989077 protein-coding Hdhd2 haloacid dehalogenase like hydrolase domain containing 2 ENCODES a protein that exhibits enzyme binding (ortholog); ASSOCIATED WITH Weight Gain (ortholog) NW_004955402 32495053 32529284 - 102006729 AGCD01000824;GBCB01088536;XM_005372887;XM_013510503;XM_013510504;XM_013510505 XP_005372944;XP_013365957;XP_013365958;XP_013365959 MODEL 8954667 protein-coding Dhdds dehydrodolichyl diphosphate synthase subunit ENCODES a protein that exhibits ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity (ortholog); prenyltransferase activity (ortholog); INVOLVED IN dolichyl diphosphate biosynthetic process (ortholog); dolichyl monophosphate biosynthetic process (ortholog); ASSOCIATED WITH developmental delay and seizures with or without movement abnormalities (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN dehydrodolichyl diphosphate synthase complex (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955452 5811053 5844992 + 102017944 AGCD01044055;AGCD01044056;AGCD01044057;AGCD01044058;GBDK01196360;XM_005394858;XM_013519674 XP_005394915;XP_013375128 MODEL 39134328 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 8785809 protein-coding LOC102016482 E3 SUMO-protein ligase PIAS2-like NW_004955420 30189775 30195685 + 102016482 AGCD01021538;GBCB01120667;XM_013513632 XP_013369086 MODEL 8903019 pseudo LOC102017245 sentrin-specific protease 6-like NW_004955422 15139959 15144979 - 102017245 AGCD01022876 MODEL 150537128 mirna MIRLET7F2 microRNA let-7f-2 8704237 protein-coding Gprin3 GPRIN family member 3 INVOLVED IN cell morphogenesis involved in neuron differentiation (ortholog); excitatory chemical synaptic transmission (ortholog); locomotory behavior (ortholog) NW_004955405 253917 265309 - 102005103 AGCD01004555;GBDF01115743;XM_013517274 XP_013372728 MODEL 10370807 protein-coding LOC106150201 uncharacterized LOC106150201 NW_004955468 2198060 2203631 + 106150201 AGCD01051801;GBDF01183696;XM_013522289 XP_013377743 MODEL 39132994 snrna U1 U1 spliceosomal RNA 8888536 protein-coding Syt2 synaptotagmin 2 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); inositol 1,3,4,5 tetrakisphosphate binding (ortholog); INVOLVED IN calcium-dependent activation of synaptic vesicle fusion (ortholog); positive regulation of dendrite extension (ortholog); ASSOCIATED WITH axonal neuropathy (ortholog); congenital myasthenic syndrome (ortholog); congenital myasthenic syndrome 7 (ortholog); FOUND IN axon (ortholog); neuromuscular junction (ortholog); plasma membrane (ortholog) NW_004955406 38638192 38743077 - 102028056 AGCD01006609;GBDF01114073;XM_005375224;XM_005375225;XM_005375226 XP_005375281;XP_005375282;XP_005375283 MODEL 8806386 protein-coding LOC102004834 uncharacterized LOC102004834 NW_004955426 391229 395014 + 102004834 AGCD01026001;GBDF01177168;XM_005386119;XM_005386120;XR_001234323 XP_005386176;XP_005386177 MODEL 8767099 pseudo LOC102016829 putative E3 ubiquitin-protein ligase UBR7 pseudogene NW_004955427 9590756 9592893 - 102016829 AGCD01027102 MODEL 10214996 protein-coding LOC106149794 cuticle protein 16.5 NW_004955453 7039347 7040936 + 106149794 AGCD01044736;XM_013519979 XP_013375433 MODEL 8963878 protein-coding LOC102005173 trace amine-associated receptor 2 NW_004955436 13191916 13192815 - 102005173 AGCD01033855;XM_005415330 XP_005415387 MODEL 8952481 protein-coding Nptn neuroplastin ENCODES a protein that exhibits cell adhesion molecule binding (ortholog); transmembrane transporter binding (ortholog); type 1 fibroblast growth factor receptor binding (ortholog); INVOLVED IN excitatory synapse assembly (ortholog); homophilic cell-cell adhesion (ortholog); intracellular calcium ion homeostasis (ortholog); ASSOCIATED WITH Developmental Disease (ortholog); hypertension (ortholog); Myocardial Ischemia (ortholog); FOUND IN cell surface (ortholog); dendrite (ortholog); GABA-ergic synapse (ortholog) NW_004955450 3938403 4002694 + 102024408 AGCD01042452;AGCD01042453;GBDF01119295;XM_005393595;XM_005393596;XM_005393597 XP_005393652;XP_005393653;XP_005393654 MODEL 39132377 snrna U6 U6 spliceosomal RNA 8912933 pseudo LOC102022385 tropomyosin alpha-3 chain pseudogene NW_004955415 23751994 23752771 - 102022385 AGCD01016560;XR_260339 MODEL 10308962 ncrna LOC106149384 uncharacterized LOC106149384 NW_004955444 287754 305511 + 106149384 AGCD01038660;AGCD01038661;AGCD01038662;AGCD01038663;GBDF01304436;XR_001235536 MODEL 8859445 protein-coding LOC102013110 membrane-spanning 4-domains subfamily A member 12-like NW_004955511 4782390 4792412 - 102013110 AGCD01066526;XM_013506411 XP_013361865 MODEL 9044240 protein-coding LOC102004103 EF-hand calcium-binding domain-containing protein 1-like NW_004955432 9467793 9483554 - 102004103 AGCD01030906;GBDK01028185;XM_005388019;XM_013515941 XP_005388076;XP_013371395 MODEL 10108170 ncrna LOC106147790 uncharacterized LOC106147790 NW_004955402 34832462 34863151 + 106147790 AGCD01000871;AGCD01000872;XR_001232757 MODEL 10346089 ncrna LOC106148453 uncharacterized LOC106148453 NW_004955422 5023911 5036231 + 106148453 AGCD01022561;GBDF01278094;XR_001233903 MODEL 8928020 protein-coding CUNH10orf90 chromosome unknown C10orf90 homolog ENCODES a protein that exhibits histone deacetylase binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN DNA damage response (ortholog); mitotic G2 DNA damage checkpoint signaling (ortholog); negative regulation of cell growth (ortholog); FOUND IN actin cytoskeleton (ortholog); centrosome (ortholog); cytoplasm (ortholog) NW_004955477 4299277 4510702 - 102012090 AGCD01055581;AGCD01055582;AGCD01055583;AGCD01055584;GBCQ01114390;XM_005402005;XM_013503016;XM_013503017;XM_013503018;XM_013503019 XP_005402062;XP_013358470;XP_013358471;XP_013358472;XP_013358473 MODEL 8836314 protein-coding LOC102013512 olfactory receptor 4C12-like NW_004955422 189260 205015 - 102013512 AGCD01022401;GBDF01234708;XM_005383939 XP_005383996 MODEL 8788119 protein-coding Nexmif neurite extension and migration factor INVOLVED IN negative regulation of cell adhesion mediated by integrin (ortholog); negative regulation of cell-cell adhesion mediated by cadherin (ortholog); negative regulation of cell-matrix adhesion (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog) NW_004955562 780172 786049 - 102025052 AGCD01073946;XM_013509113 XP_013364567 MODEL 8779513 ncrna LOC102022028 uncharacterized LOC102022028 NW_004955444 6714099 6722009 - 102022028 AGCD01038874;GBBH01224885;XR_262244 MODEL 8789158 protein-coding Nudt17 nudix hydrolase 17 ENCODES a protein that exhibits 5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity (ortholog); INVOLVED IN RNA decapping (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog) NW_004955568 236943 240273 - 102005523 AGCD01074506;GBDF01085324;XM_005413434;XM_005413435;XM_013509334 XP_005413491;XP_005413492;XP_013364788 MODEL 151707889 mirna MIRLET7G microRNA let-7g 8923188 protein-coding Dhdh dihydrodiol dehydrogenase ENCODES a protein that exhibits D-xylose 1-dehydrogenase (NADP+) activity (ortholog); galactose 1-dehydrogenase (NADP+) activity (ortholog); glucose 1-dehydrogenase [NAD(P)+] activity (ortholog); INVOLVED IN D-xylose catabolic process (ortholog); ASSOCIATED WITH prostate cancer (ortholog); Prostatic Neoplasms (ortholog) NW_004955559 1706950 1719220 - 102028476 AGCD01073662;AGCD01073663;AGCD01073664;GBCQ01129279;XM_005412923 XP_005412980 MODEL 10315942 pseudo LOC106149117 10 kDa heat shock protein, mitochondrial-like NW_004955437 16874517 16875860 - 106149117 AGCD01034716 MODEL 8753565 protein-coding Rplp1 ribosomal protein lateral stalk subunit P1 ENCODES a protein that exhibits ribonucleoprotein complex binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to Thyroid stimulating hormone (ortholog); cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; FOUND IN cytoplasm (ortholog); cytosol (ortholog); cytosolic large ribosomal subunit (ortholog) NW_004955450 7053378 7055858 - 102015794 AGCD01042531;GBBH01015831;XM_005393659 XP_005393716 MODEL 8774819 pseudo LOC102024799 transketolase-like NW_004955418 20497455 20499483 + 102024799 AGCD01019228 MODEL 10071968 ncrna LOC106148866 uncharacterized LOC106148866 NW_004955431 14955149 14983098 - 106148866 AGCD01030344;AGCD01030345;GBDI01380374;XR_001234587 MODEL 10280168 ncrna LOC106147648 uncharacterized LOC106147648 NW_004955617 262079 264159 + 106147648 AGCD01077275;GBCB01089905;XR_001232582 MODEL 9043370 protein-coding Il18rap interleukin 18 receptor accessory protein ENCODES a protein that exhibits coreceptor activity (ortholog); interleukin-18 receptor activity (ortholog); INVOLVED IN cell population proliferation (ortholog); cellular response to cytokine stimulus (ortholog); cellular response to hydrogen peroxide (ortholog); PARTICIPATES IN interleukin-12 signaling pathway; interleukin-23 signaling pathway; ASSOCIATED WITH aortic dissection (ortholog); Bronchial Hyperreactivity (ortholog); inflammatory bowel disease (ortholog); FOUND IN interleukin-18 receptor complex (ortholog); plasma membrane (ortholog) NW_004955470 7894900 7923653 + 102021331 AGCD01052816;GBDI01059444;XM_005400771;XM_005400772;XM_013522677 XP_005400828;XP_005400829;XP_013378131 MODEL 8874873 protein-coding Lzic leucine zipper and CTNNBIP1 domain containing INVOLVED IN response to ionizing radiation (ortholog); ASSOCIATED WITH osteosarcoma (ortholog) NW_004955486 3655745 3666828 + 102017880 AGCD01059034;GBDF01122969;XM_005404022;XM_005404023 XP_005404079;XP_005404080 MODEL 8988074 protein-coding LOC102029678 DNA excision repair protein ERCC-8 NW_004955446 7532094 7574373 + 102029678 AGCD01040122;AGCD01040123;AGCD01040124;GBDF01249725;XM_005392653;XM_005392654;XM_005392655;XM_013518416;XR_262377 XP_005392710;XP_005392711;XP_005392712;XP_013373870 MODEL 8863457 protein-coding LOC102020941 olfactory receptor 5AL1-like NW_004955511 1521558 1522538 + 102020941 AGCD01066370;XM_005408234 XP_005408291 MODEL 8882099 protein-coding Carhsp1 calcium regulated heat stable protein 1 ENCODES a protein that exhibits mRNA 3'-UTR binding (ortholog); INVOLVED IN regulation of mRNA stability (ortholog); ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); FOUND IN cytoplasmic exosome (RNase complex) (ortholog); cytosol (ortholog); P granule (ortholog) NW_004955442 9382360 9388414 + 102015990 AGCD01037679;GBCE01116617;XM_005391211;XM_005391213;XM_013517835 XP_005391268;XP_005391270;XP_013373289 MODEL 8704109 protein-coding Gorasp2 golgi reassembly stacking protein 2 INVOLVED IN establishment of protein localization to plasma membrane (ortholog); Golgi organization (ortholog); response to endoplasmic reticulum stress (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog); Golgi medial cisterna (ortholog) NW_004955449 3857097 3886100 - 102022345 AGCD01041868;AGCD01041869;GBDI01078948;XM_005393241 XP_005393298 MODEL 10215760 pseudo LOC106150345 ATP-dependent RNA helicase DDX18 pseudogene NW_004955473 5522962 5525460 - 106150345 AGCD01053979 MODEL 8803660 protein-coding LOC102016486 eukaryotic translation initiation factor 3 subunit C NW_004955493 6664693 6679942 - 102016486 AGCD01061126;AGCD01061127;GBDI01017539;XM_005405168 XP_005405225 MODEL 8998297 protein-coding Hdhd3 haloacid dehalogenase like hydrolase domain containing 3 FOUND IN mitochondrion (ortholog); nucleolus (ortholog) NW_004955419 14118729 14123578 + 102022819 AGCD01020012;GBBH01094483;XM_005382676;XM_005382677;XM_013513136 XP_005382733;XP_005382734;XP_013368590 MODEL 8859786 protein-coding Egr1 early growth response 1 ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); DNA-binding transcription factor activity (ortholog); INVOLVED IN BMP signaling pathway (ortholog); cellular response to antibiotic (ortholog); cellular response to cAMP (ortholog); PARTICIPATES IN long term potentiation; ASSOCIATED WITH adult respiratory distress syndrome (ortholog); Alzheimer's disease (ortholog); aortic valve stenosis (ortholog); FOUND IN chromatin (ortholog); cytoplasm (ortholog); nucleoplasm (ortholog) NW_004955418 2001509 2005269 - 102026526 AGCD01018737;GBBH01033334;GBBH01033337;XM_005382100 XP_005382157 MODEL 9009511 ncrna LOC102008109 uncharacterized LOC102008109 NW_004955419 15542763 15563815 - 102008109 AGCD01020083;GBDF01286433;XR_260633 MODEL 8861185 protein-coding LOC102023109 cytochrome c1, heme protein, mitochondrial INVOLVED IN response to glucagon (ortholog); ASSOCIATED WITH mitochondrial complex III deficiency nuclear type 1 (ortholog); mitochondrial complex III deficiency nuclear type 6 (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); respiratory chain complex III (ortholog) NW_004955454 2758935 2760569 + 102023109 AGCD01045033;GBCQ01008022;GBDF01045160;XM_013520268 XP_013375722 MODEL 10138664 protein-coding LOC106150202 ESX-1 secretion-associated protein EspK-like NW_004955468 3133673 3135157 + 106150202 AGCD01051856;GBDF01262998;XM_013522292 XP_013377746 MODEL 8846193 protein-coding Vax2 ventral anterior homeobox 2 ENCODES a protein that exhibits chromatin DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN axonogenesis (ortholog); camera-type eye development (ortholog); dorsal/ventral axis specification (ortholog); ASSOCIATED WITH syndromic microphthalmia 5 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955424 14283336 14309809 - 102030092 AGCD01024649;AGCD01024650;GBDI01159286;XM_005385606 XP_005385663 MODEL 10270175 ncrna LOC106149531 uncharacterized LOC106149531 NW_004955448 8188724 8192815 - 106149531 AGCD01041437;GBCE01178120;XR_001235784 MODEL 39132889 snrna U1 U1 spliceosomal RNA 8805856 protein-coding LOC102016832 vomeronasal type-1 receptor 90-like NW_004955429 12306829 12307755 - 102016832 AGCD01028712;XM_005387244 XP_005387301 MODEL 8751576 protein-coding Nudt18 nudix hydrolase 18 ENCODES a protein that exhibits 8-hydroxy-dADP phosphatase activity (ortholog); 8-oxo-dGDP phosphatase activity (ortholog); 8-oxo-GDP phosphatase activity (ortholog); INVOLVED IN dADP catabolic process (ortholog); dGDP catabolic process (ortholog); GDP catabolic process (ortholog); FOUND IN Golgi apparatus (ortholog); nucleoplasm (ortholog) NW_004955403 45598813 45601940 - 102003082 AGCD01002824;GBBH01164592;XM_005373646 XP_005373703 MODEL 8705484 protein-coding Ttc33 tetratricopeptide repeat domain 33 NW_004955426 25017351 25075164 - 102024820 AGCD01026701;GBCQ01098236;XM_005386241;XM_005386242 XP_005386298;XP_005386299 MODEL 8808765 protein-coding Tmem214 transmembrane protein 214 ASSOCIATED WITH autistic disorder (ortholog); Contracture (ortholog); FOUND IN cytoplasmic microtubule (ortholog); endoplasmic reticulum (ortholog) NW_004955469 9009398 9017402 + 102030516 AGCD01052487;GBCQ01068620;GBDI01074901;XM_005400571 XP_005400628 MODEL 8784131 ncrna LOC102005180 uncharacterized LOC102005180 NW_004955540 2515392 2519809 + 102005180 AGCD01071321;GBDF01244999;XR_264826 MODEL 8722367 protein-coding Lrrc74a leucine rich repeat containing 74A NW_004955438 805119 834335 + 102003283 AGCD01034963;AGCD01034964;GBDF01210386;XM_005390160;XM_005390161;XM_013517175;XM_013517176 XP_005390217;XP_005390218;XP_013372629;XP_013372630 MODEL 8977070 ncrna LOC102020209 uncharacterized LOC102020209 NW_004955457 10030162 10042819 + 102020209 AGCD01046947;GBCQ01035883;XR_262930 MODEL 10290049 protein-coding LOC106149656 uncharacterized LOC106149656 NW_004955451 4444766 4446048 + 106149656 AGCD01043119;GBDF01010566;GBDF01010567;XM_013519226 XP_013374680 MODEL 8859598 protein-coding Nptx1 neuronal pentraxin 1 INVOLVED IN axonogenesis involved in innervation (ortholog); cellular response to glucose stimulus (ortholog); cellular response to potassium ion (ortholog); ASSOCIATED WITH genetic disease (ortholog); Spinocerebellar Ataxia 50 (ortholog); FOUND IN endoplasmic reticulum (ortholog); extracellular region (ortholog); glutamatergic synapse (ortholog) NW_004955506 2447429 2456612 + 102018309 AGCD01065296;GBCE01002469;XM_005407321;XM_013506119 XP_005407378;XP_013361573 MODEL 10210988 protein-coding LOC106146824 multiple epidermal growth factor-like domains protein 6 NW_004955497 91307 115495 + 106146824 AGCD01062401;XM_013505447 XP_013360901 MODEL 39134329 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 9052841 pseudo LOC102013112 ATP synthase F(0) complex subunit B1, mitochondrial pseudogene NW_004955514 556735 557501 + 102013112 AGCD01067014 MODEL 10155993 ncrna LOC106148454 uncharacterized LOC106148454 NW_004955422 11883741 11905195 - 106148454 AGCD01022772;AGCD01022773;GBDF01177131;XR_001233904 MODEL 10090469 protein-coding LOC106147791 basic proline-rich protein-like NW_004955410 36570127 36574160 - 106147791 AGCD01011431;AGCD01011432;GBCQ01086288;GBDF01280899;XM_013510639 XP_013366093 MODEL 9038941 protein-coding Gcnt7 glucosaminyl (N-acetyl) transferase family member 7 NW_004955445 2737228 2750104 + 102008783 AGCD01039364;GBBH01056981;XM_005392265;XM_005392266 XP_005392322;XP_005392323 MODEL 8973290 pseudo LOC102017246 protein slowmo homolog 2-like NW_004955492 8620255 8620892 - 102017246 AGCD01060822 MODEL 8956671 protein-coding Rnf19a ring finger protein 19A, RBR E3 ubiquitin protein ligase INVOLVED IN regulation of protein catabolic process at postsynapse, modulating synaptic transmission (ortholog); ASSOCIATED WITH multiple sclerosis (ortholog); FOUND IN glutamatergic synapse (ortholog); hippocampal mossy fiber to CA3 synapse (ortholog) NW_004955417 15492056 15543591 - 102015718 AGCD01018234;AGCD01018235;AGCD01018236;GBDF01080231;GBDK01090137;XM_005381865 XP_005381922 MODEL 9045664 ncrna LOC102029682 uncharacterized LOC102029682 NW_004955402 10927331 10930977 + 102029682 AGCD01000294;GBDF01253228;XR_259049 MODEL 10328620 ncrna LOC106148320 uncharacterized LOC106148320 NW_004955420 14690428 14713409 + 106148320 AGCD01020954;GBDI01268087;XR_001233660;XR_001233661;XR_001233662 MODEL 8919827 protein-coding Gps1 G protein pathway suppressor 1 INVOLVED IN protein deneddylation (ortholog); FOUND IN COP9 signalosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955506 1105157 1110129 - 102016730 AGCD01065245;GBBH01090750;XM_005407221;XM_005407223;XM_005407224;XM_013506096 XP_005407278;XP_005407280;XP_005407281;XP_013361550 MODEL 10288535 ncrna LOC106147503 uncharacterized LOC106147503 NW_004955570 1633402 1639631 + 106147503 AGCD01074820;GBDK01096877;XR_001232430 MODEL 8961531 ncrna LOC102022029 uncharacterized LOC102022029 NW_004955444 13751675 13756534 + 102022029 AGCD01039108;GBCQ01182547;XR_262269 MODEL 10314259 ncrna LOC106147385 uncharacterized LOC106147385 NW_004955550 1779648 1782790 - 106147385 AGCD01072588;GBDF01159446;XR_001232264 MODEL 39132378 snrna U6 U6 spliceosomal RNA 8923657 ncrna LOC102022388 uncharacterized LOC102022388 NW_004955478 11128973 11130658 + 102022388 AGCD01056161;GBDF01005544;XR_263725;XR_263726 MODEL 8964581 ncrna LOC102004107 uncharacterized LOC102004107 NW_004955516 3479563 3512968 + 102004107 AGCD01067493;AGCD01067494;GBCB01099233;XR_264534;XR_264535 MODEL 10382209 protein-coding LOC106147649 endogenous retrovirus group S71 member 1 Env polyprotein-like NW_004955620 130629 163825 + 106147649 AGCD01077363;AGCD01077364;AGCD01077365;GBDF01215504;XM_013510151 XP_013365605 MODEL 8795883 ncrna LOC102022031 uncharacterized LOC102022031 NW_004955447 11648372 11723145 - 102022031 AGCD01040911;AGCD01040912;AGCD01040913;AGCD01040914;AGCD01040915;GBDF01052321;XR_001235704;XR_262421 MODEL 9027874 pseudo LOC102022755 polycomb protein SUZ12 pseudogene NW_004955568 1527541 1533685 + 102022755 AGCD01074547 MODEL 8802157 protein-coding LOC102013514 vomeronasal type-1 receptor 4-like NW_004955494 8280036 8280923 + 102013514 AGCD01061582;XM_005405545 XP_005405602 MODEL 8792901 protein-coding Lztfl1 leucine zipper transcription factor like 1 ENCODES a protein that exhibits identical protein binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN flagellated sperm motility (ortholog); negative regulation of protein localization to ciliary membrane (ortholog); negative regulation of protein localization to cilium (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); Bardet-Biedl syndrome 1 (ortholog); Bardet-Biedl syndrome 17 (ortholog); FOUND IN cilium (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955420 26130432 26145516 + 102005046 AGCD01021391;GBCQ01068914;XM_005383465;XM_005383466;XM_005383467 XP_005383522;XP_005383523;XP_005383524 MODEL 10134897 ncrna LOC106148455 uncharacterized LOC106148455 NW_004955422 12434123 12438999 + 106148455 AGCD01022795;XR_001233905;XR_001233906 MODEL 8920097 protein-coding Gcsam germinal center associated signaling and motility ENCODES a protein that exhibits actin binding (ortholog); myosin II binding (ortholog); protein kinase binding (ortholog); INVOLVED IN negative regulation of lymphocyte migration (ortholog); regulation of B cell receptor signaling pathway (ortholog); FOUND IN plasma membrane (ortholog) NW_004955427 12524261 12533773 - 102025142 AGCD01027218;GBDI01086335;XM_013515053 XP_013370507 MODEL 10293041 ncrna LOC106149795 uncharacterized LOC106149795 NW_004955453 6959138 6961877 + 106149795 AGCD01044734;XR_001236191 MODEL 8896477 protein-coding Nexn nexilin F-actin binding protein ENCODES a protein that exhibits actin filament binding (ortholog); structural constituent of muscle (ortholog); INVOLVED IN regulation of cell migration (ortholog); regulation of cytoskeleton organization (ortholog); response to bacterium (ortholog); ASSOCIATED WITH cardiomyopathy (ortholog); congestive heart failure (ortholog); dilated cardiomyopathy (ortholog); FOUND IN actin cytoskeleton (ortholog); cell-substrate junction (ortholog); focal adhesion (ortholog) NW_004955423 15278526 15299654 - 102012216 AGCD01023801;AGCD01023802;GBCB01005603;GBDJ01313165;XM_005385190;XM_013514423 XP_005385247;XP_013369877 MODEL 8823826 ncrna LOC102004835 uncharacterized LOC102004835 NW_004955502 6301282 6361720 - 102004835 AGCD01064397;AGCD01064398;AGCD01064399;GBDF01305427;XR_264266 MODEL 8727140 protein-coding Carm1 coactivator associated arginine methyltransferase 1 ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); histone H3R17 methyltransferase activity (ortholog); histone H3R2 methyltransferase activity (ortholog); INVOLVED IN endochondral bone morphogenesis (ortholog); estrogen receptor signaling pathway (ortholog); gene expression (ortholog); PARTICIPATES IN androgen signaling pathway; estrogen signaling pathway; histone modification pathway; ASSOCIATED WITH asthma (ortholog); estrogen-receptor positive breast cancer (ortholog); hepatocellular adenoma (ortholog); FOUND IN chromosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955495 1983599 2002174 + 102028553 AGCD01061743;AGCD01061744;GBDF01009004;XM_005406133 XP_005406190 MODEL 9047603 protein-coding Syt3 synaptotagmin 3 ENCODES a protein that exhibits calcium-dependent phospholipid binding (ortholog); clathrin binding (ortholog); identical protein binding (ortholog); INVOLVED IN positive regulation of dendrite extension (ortholog); positive regulation of vesicle fusion (ortholog); regulation of calcium ion-dependent exocytosis (ortholog); FOUND IN endosome (ortholog); plasma membrane (ortholog); postsynapse (ortholog) NW_004955559 580453 591938 + 102016319 AGCD01073595;AGCD01073596;AGCD01073597;GBDF01249855;XM_005412775;XM_005412776;XM_013508925 XP_005412832;XP_005412833;XP_013364379 MODEL 9032786 protein-coding Hdhd5 haloacid dehalogenase like hydrolase domain containing 5 FOUND IN mitochondrion (ortholog) NW_004955454 5284936 5294969 - 102029474 AGCD01045139;AGCD01045140;GBBH01164117;GBDJ01224094;XM_013520236;XM_013520237 XP_013375690;XP_013375691 MODEL 10280225 pseudo LOC106150203 histo-blood group ABO system transferase-like NW_004955468 4272096 4276776 - 106150203 AGCD01051904 MODEL 8768992 protein-coding Dhfr dihydrofolate reductase ENCODES a protein that exhibits dihydrofolate reductase activity (ortholog); dihydrofolic acid binding (ortholog); folate reductase activity (ortholog); INVOLVED IN 'de novo' pyrimidine nucleobase biosynthetic process (ortholog); axon regeneration (ortholog); dihydrofolate metabolic process (ortholog); PARTICIPATES IN altered folate cycle metabolic pathway; dopa responsive dystonia pathway; folate cycle metabolic pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); autistic disorder (ortholog); Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955418 29274170 29283028 + 102014049 AGCD01019455;GBCE01039261;XM_005382314 XP_005382371 MODEL 8844787 protein-coding Rplp2 ribosomal protein lateral stalk subunit P2 ENCODES a protein that exhibits iron ion binding (ortholog); ribonucleoprotein complex binding (ortholog); structural constituent of ribosome (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to Thyroid stimulating hormone (ortholog); cytoplasmic translation (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); FOUND IN cytoplasm (ortholog); cytosolic large ribosomal subunit (ortholog); synapse (ortholog) NW_004955476 11312051 11314334 - 102009601 AGCD01055449;GBDF01007084;XM_005401811 XP_005401868 MODEL 10274425 ncrna LOC106149385 uncharacterized LOC106149385 NW_004955444 17709487 17718570 - 106149385 AGCD01039223;GBDJ01375568;XR_001235537 MODEL 8851906 pseudo LOC102016835 phosphoserine aminotransferase-like NW_004955431 15649239 15650787 - 102016835 AGCD01030364 MODEL 8832384 protein-coding Tmem215 transmembrane protein 215 INVOLVED IN angiogenesis (ortholog); negative regulation of endothelial cell apoptotic process (ortholog); negative regulation of programmed necrotic cell death (ortholog) NW_004955472 2875398 2879115 - 102013821 AGCD01053493;GBBH01145488;GBCE01170765;XM_005401116 XP_005401173 MODEL 10205725 ncrna LOC106149658 uncharacterized LOC106149658 NW_004955405 43058424 43091546 - 106149658 AGCD01005598;AGCD01005599;GBBH01083490;XR_001235970;XR_001235971 MODEL 8997536 pseudo LOC102020944 40S ribosomal protein S3a-like NW_004955432 1189191 1190112 + 102020944 AGCD01030586 MODEL 8995846 protein-coding LOC102016489 olfactory receptor 7A17-like NW_004955495 8483137 8484102 - 102016489 AGCD01062212;XM_005406109 XP_005406166 MODEL 8965741 protein-coding Nptx2 neuronal pentraxin 2 INVOLVED IN associative learning (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); ASSOCIATED WITH withdrawal disorder (ortholog); FOUND IN extrinsic component of postsynaptic specialization membrane (ortholog); glutamatergic synapse (ortholog); presynapse (ortholog) NW_004955460 14437755 14448932 + 102030286 AGCD01048755;GBDF01276617;XM_005397917 XP_005397974 MODEL 8764778 protein-coding Mis12 MIS12 kinetochore complex component INVOLVED IN attachment of mitotic spindle microtubules to kinetochore (ortholog); chromosome segregation (ortholog); kinetochore assembly (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN kinetochore (ortholog); MIS12/MIND type complex (ortholog); nucleus (ortholog) NW_004955467 10837570 10842131 + 102028945 AGCD01051586;GBDF01159192;XM_005399649;XM_005399650 XP_005399706;XP_005399707 MODEL 8949389 ncrna LOC102013113 uncharacterized LOC102013113 NW_004955432 22553707 22573140 - 102013113 AGCD01031262;GBDJ01369374;XR_001234681;XR_001234682;XR_001234683;XR_001234684;XR_001234685;XR_001234686;XR_001234687;XR_001234688;XR_001234689 MODEL 8964224 ncrna LOC102017253 uncharacterized LOC102017253 NW_004955500 6569965 6573259 - 102017253 AGCD01063886;GBDI01149250;XR_264234 MODEL 10376603 protein-coding LOC106149118 UPF0317 protein KRH_21160-like NW_004955437 16871639 16872489 - 106149118 AGCD01034715;GBCQ01089553;XM_013516969 XP_013372423 MODEL 8826532 protein-coding LOC102008111 UPF0547 protein C16orf87 NW_004955420 26793782 26794800 + 102008111 AGCD01021432;XM_005383473 XP_005383530 MODEL 10165597 ncrna LOC106148867 uncharacterized LOC106148867 NW_004955431 22826016 22828881 + 106148867 AGCD01030524;GBDF01241091;XR_001234591 MODEL 39132893 snrna U1 U1 spliceosomal RNA 10296623 ncrna LOC106149532 uncharacterized LOC106149532 NW_004955448 8074930 8112070 - 106149532 AGCD01041434;AGCD01041435;AGCD01041436;GBDK01393642;XR_001235785;XR_001235786 MODEL 10213477 ncrna LOC106147504 uncharacterized LOC106147504 NW_004955570 1497324 1502789 - 106147504 AGCD01074815;GBDF01126186;XR_001232431 MODEL 8967277 protein-coding CUNH11orf24 chromosome unknown C11orf24 homolog FOUND IN Golgi apparatus (ortholog) NW_004955422 17563188 17573079 + 102005153 AGCD01022926;AGCD01022927;AGCD01022928;GBBH01102136;XM_005384279;XM_013514340 XP_005384336;XP_013369794 MODEL 8888603 protein-coding Nudt19 nudix hydrolase 19 ENCODES a protein that exhibits coenzyme A diphosphatase activity (ortholog); magnesium ion binding (ortholog); INVOLVED IN butyryl-CoA catabolic process (ortholog); coenzyme A catabolic process (ortholog); malonyl-CoA catabolic process (ortholog); FOUND IN mitochondrion (ortholog) NW_004955468 5284650 5291706 - 102030174 AGCD01051962;AGCD01051963;GBCQ01006390;XM_005400086 XP_005400143 MODEL 10237266 ncrna LOC106147386 uncharacterized LOC106147386 NW_004955550 1942507 1946981 - 106147386 AGCD01072599;GBDI01011574;XR_001232267 MODEL 8966399 ncrna LOC102005183 uncharacterized LOC102005183 NW_004955439 1843897 1881335 + 102005183 AGCD01035628;GBDF01100877;XR_001235170;XR_001235171;XR_261965;XR_261966 MODEL 8723911 protein-coding Ttc34 tetratricopeptide repeat domain 34 NW_004955486 8620609 8633069 + 102003451 AGCD01059152;AGCD01059153;GBDJ01134032;XM_005404156 XP_005404213 MODEL 10085676 protein-coding LOC106146825 laminin subunit gamma-1-like NW_004955497 118560 126008 + 106146825 AGCD01062401;XM_013505448 XP_013360902 MODEL 8886971 ncrna LOC102004111 uncharacterized LOC102004111 NW_004955434 23261266 23296395 + 102004111 AGCD01032700;AGCD01032701;GBDK01349819;XR_001234809;XR_001234810;XR_001234811;XR_001234812;XR_261646 MODEL 8768047 protein-coding Rpn1 ribophorin I INVOLVED IN glycoprotein biosynthetic process (ortholog); protein N-linked glycosylation (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); FOUND IN cytosol (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955429 15204848 15231547 + 102022726 AGCD01028797;AGCD01028798;GBDF01192724;XM_005387036 XP_005387093 MODEL 8762401 ncrna LOC102023113 uncharacterized LOC102023113 NW_004955407 27659467 27670297 + 102023113 AGCD01007555;GBCQ01144581;XR_259591 MODEL 8769280 protein-coding LOC102020948 putative olfactory receptor 2W6 NW_004955524 152296 153240 - 102020948 AGCD01068668;XM_005409655 XP_005409712 MODEL 8716236 protein-coding Tmem216 transmembrane protein 216 INVOLVED IN cilium assembly (ortholog); positive regulation of cilium assembly (ortholog); positive regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); Joubert syndrome (ortholog); FOUND IN ciliary transition zone (ortholog); cilium (ortholog); MKS complex (ortholog) NW_004955511 6164143 6167887 - 102013856 AGCD01066598;GBDI01182797;XM_005408153;XM_005408154;XM_005408155 XP_005408210;XP_005408211;XP_005408212 MODEL 8934089 protein-coding LOC102013519 probable N-acetyltransferase CML1 NW_004955424 12047830 12049545 + 102013519 AGCD01024593;GBCQ01036376;XM_005385553 XP_005385610 MODEL 10332775 ncrna LOC106148456 uncharacterized LOC106148456 NW_004955422 17527510 17535995 + 106148456 AGCD01022925;GBDF01180079;XR_001233907 MODEL 8800844 protein-coding Gps2 G protein pathway suppressor 2 ENCODES a protein that exhibits cyclin binding (ortholog); transcription coactivator activity (ortholog); transcription corepressor activity (ortholog); INVOLVED IN B cell differentiation (ortholog); negative regulation of B cell receptor signaling pathway (ortholog); negative regulation of fat cell differentiation (ortholog); FOUND IN cytoplasm (ortholog); cytosol (ortholog); mitochondrion (ortholog) NW_004955467 9600829 9604148 + 102021866 AGCD01051519;GBDI01060015;XM_005399523;XM_005399524;XM_005399525 XP_005399580;XP_005399581;XP_005399582 MODEL 8799509 protein-coding Gcsaml germinal center associated signaling and motility like NW_004955581 770356 803012 + 102026371 AGCD01075694;AGCD01075695;AGCD01075696;GBDK01432789;XM_013509730 XP_013365184 MODEL 8739150 protein-coding Il19 interleukin 19 INVOLVED IN negative regulation of extrinsic apoptotic signaling pathway (ortholog); negative regulation of low-density lipoprotein particle clearance (ortholog); positive regulation of apoptotic signaling pathway (ortholog); PARTICIPATES IN interleukin-23 signaling pathway; ASSOCIATED WITH asthma (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); chronic kidney disease (ortholog); FOUND IN signaling receptor complex (ortholog) NW_004955406 42376102 42384902 + 102022669 AGCD01006704;AGCD01006705;XM_013502759;XM_013502762 XP_013358213;XP_013358216 MODEL 8909135 ncrna LOC102020211 uncharacterized LOC102020211 NW_004955408 24110038 24115850 + 102020211 AGCD01008594;GBDF01118248;XR_001232406 MODEL 8779129 protein-coding Hdlbp high density lipoprotein binding protein ASSOCIATED WITH autistic disorder (ortholog); chromosome 2q37 deletion syndrome (ortholog); COVID-19 (ortholog); FOUND IN endoplasmic reticulum (ortholog); nuclear body (ortholog) NW_004955542 444221 505512 + 102008891 AGCD01071474;GBDF01002916;XM_005411130;XM_005411131;XM_005411132 XP_005411187;XP_005411188;XP_005411189 MODEL 8855679 protein-coding Lrrc74b leucine rich repeat containing 74B NW_004955442 19272350 19296090 + 102021714 AGCD01038045;AGCD01038046;AGCD01038047;AGCD01038048;AGCD01038049;GBDF01016721;XM_013517985 XP_013373439 MODEL 8973315 protein-coding Nf1 neurofibromin 1 ENCODES a protein that exhibits GTPase activator activity (ortholog); microtubule binding (ortholog); phosphatidylcholine binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); adrenal gland development (ortholog); amygdala development (ortholog); PARTICIPATES IN forkhead class A signaling pathway; syndecan signaling pathway; ASSOCIATED WITH acute monocytic leukemia (ortholog); acute myeloid leukemia (ortholog); adenoma (ortholog); FOUND IN axon (ortholog); cytoplasm (ortholog); dendrite (ortholog) NW_004955481 6145855 6404179 + 102018496 AGCD01057014;AGCD01057015;AGCD01057016;AGCD01057017;AGCD01057018;AGCD01057019;AGCD01057020;AGCD01057021;AGCD01057022;AGCD01057023;AGCD01057024;AGCD01057025;GBDF01224428;XM_005402798;XM_005402799;XM_005402800;XM_013503423;XM_013503424 XP_005402855;XP_005402856;XP_005402857;XP_013358877;XP_013358878 MODEL 10253442 ncrna LOC106147650 uncharacterized LOC106147650 NW_004955623 145881 153862 - 106147650 AGCD01077416;GBDF01235496;XR_001232589 MODEL 8854196 protein-coding Gosr1 golgi SNAP receptor complex member 1 ENCODES a protein that exhibits SNAP receptor activity (ortholog); INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); retrograde transport, endosome to Golgi (ortholog); FOUND IN Golgi apparatus (ortholog); Golgi membrane (ortholog); membrane (ortholog) NW_004955481 2831118 2876756 - 102030077 AGCD01056887;GBDK01322232;XM_005402651;XM_005402652 XP_005402708;XP_005402709 MODEL 8878980 protein-coding LOC102022034 chromosome unknown open reading frame, human C1orf56 INVOLVED IN regulation of cell population proliferation (ortholog) NW_004955588 417837 421880 + 102022034 AGCD01076109;GBDF01009026;XM_005414483 XP_005414540 MODEL 8856462 pseudo LOC102022758 40S ribosomal protein SA pseudogene NW_004955570 1323409 1325769 + 102022758 AGCD01074809 MODEL 10161927 ncrna LOC106148321 uncharacterized LOC106148321 NW_004955420 6711492 6742896 + 106148321 AGCD01020690;AGCD01020691;GBDF01026735;XR_001233666 MODEL 8932880 pseudo LOC102024800 olfactory receptor 50-like NW_004955419 5607509 5608706 - 102024800 AGCD01019828 MODEL 9031418 protein-coding Egr2 early growth response 2 ENCODES a protein that exhibits chromatin binding (ortholog); DNA binding (ortholog); DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); INVOLVED IN aorta development (ortholog); brain segmentation (ortholog); facial nerve structural organization (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH autistic disorder (ortholog); Charcot-Marie-Tooth disease (ortholog); Charcot-Marie-Tooth disease type 1 (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog) NW_004955425 16055748 16068429 - 102023171 AGCD01025594;GBDK01360900;XM_005385956;XM_013514884;XM_013514885 XP_005386013;XP_013370338;XP_013370339 MODEL 8850469 protein-coding Vbp1 VHL binding protein 1 ENCODES a protein that exhibits amyloid-beta binding (ortholog); unfolded protein holdase activity (ortholog); INVOLVED IN negative regulation of amyloid fibril formation (ortholog); protein folding (ortholog); ASSOCIATED WITH Ependymomas (ortholog); FOUND IN cytosol (ortholog); prefoldin complex (ortholog) NW_004955594 450048 477504 - 102023763 AGCD01076427;AGCD01076428;GBCC01015796;XM_005414645;XM_005414646 XP_005414702;XP_005414703 MODEL 9022359 protein-coding Lztr1 leucine zipper like post translational regulator 1 ENCODES a protein that exhibits small GTPase binding (ortholog); ubiquitin-like ligase-substrate adaptor activity (ortholog); INVOLVED IN negative regulation of Ras protein signal transduction (ortholog); proteasome-mediated ubiquitin-dependent protein catabolic process (ortholog); protein ubiquitination (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autistic disorder (ortholog); bladder exstrophy (ortholog); FOUND IN Cul3-RING ubiquitin ligase complex (ortholog); endomembrane system (ortholog); Golgi apparatus (ortholog) NW_004955442 19315427 19333361 - 102022335 AGCD01038052;GBDI01135160;XM_005391823 XP_005391880 MODEL 8785040 protein-coding Nptxr neuronal pentraxin receptor ENCODES a protein that exhibits pentraxin receptor activity (ortholog); protein phosphatase binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN neuron projection development (ortholog); neurotransmitter receptor localization to postsynaptic specialization membrane (ortholog); regulation of postsynaptic specialization assembly (ortholog); ASSOCIATED WITH brain ischemia (ortholog); congestive heart failure (ortholog); FOUND IN extracellular region (ortholog); glutamatergic synapse (ortholog); plasma membrane (ortholog) NW_004955413 24924464 24941417 - 102010468 AGCD01014387;GBBH01021841;GBCE01141976;XM_005379659 XP_005379716 MODEL 8779392 protein-coding Gosr2 golgi SNAP receptor complex member 2 INVOLVED IN endoplasmic reticulum to Golgi vesicle-mediated transport (ortholog); intra-Golgi vesicle-mediated transport (ortholog); vesicle-mediated transport (ortholog); PARTICIPATES IN Arf family mediated signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); MUSCULAR DYSTROPHY, CONGENITAL, WITH OR WITHOUT SEIZURES (ortholog); progressive myoclonus epilepsy (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog); Golgi membrane (ortholog) NW_004955478 10868912 10889405 + 102018182 AGCD01056152;GBCE01186161;XM_005402273 XP_005402330 MODEL 8926325 protein-coding Mis18a MIS18 kinetochore protein A ENCODES a protein that exhibits identical protein binding (ortholog); protein-macromolecule adaptor activity (ortholog); INVOLVED IN CENP-A containing chromatin assembly (ortholog); chromosome segregation (ortholog); heterochromatin formation (ortholog); FOUND IN CENP-A recruiting complex (ortholog); chromosome, centromeric region (ortholog) NW_004955407 31799537 31813897 - 102014869 AGCD01007662;GBDJ01404397;XM_005375663 XP_005375720 MODEL 8987206 protein-coding Syt4 synaptotagmin 4 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); clathrin binding (ortholog); INVOLVED IN dense core granule cytoskeletal transport (ortholog); insulin secretion involved in cellular response to glucose stimulus (ortholog); memory (ortholog); ASSOCIATED WITH Experimental Seizures (ortholog); melanoma (ortholog); type 2 diabetes mellitus (ortholog); FOUND IN astrocyte projection (ortholog); axon (ortholog); dendrite (ortholog) NW_004955402 29195124 29204816 - 102021928 AGCD01000738;GBDI01097828;XM_005372850;XM_005372851;XM_005372852 XP_005372907;XP_005372908;XP_005372909 MODEL 10335293 pseudo LOC106150204 free fatty acid receptor 2-like NW_004955468 4652315 4653309 + 106150204 AGCD01051919 MODEL 9065896 pseudo LOC102008112 amyloid beta A4 precursor protein-binding family B member 2-like NW_004955488 9036407 9057644 + 102008112 AGCD01059741;AGCD01059742;AGCD01059743 MODEL 10135413 ncrna LOC106149533 uncharacterized LOC106149533 NW_004955448 4661991 4716792 + 106149533 AGCD01041350;AGCD01041351;XR_001235787 MODEL 39134330 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 8735846 protein-coding Tmem218 transmembrane protein 218 ASSOCIATED WITH Joubert syndrome (ortholog); Joubert Syndrome 39 (ortholog); Meckel syndrome 4 (ortholog) NW_004955412 26149816 26166470 - 102019046 AGCD01013185;GBBH01228728;XM_013511261;XR_001232928;XR_260025 XP_013366715 MODEL 9066269 protein-coding Dhodh dihydroorotate dehydrogenase (quinone) ENCODES a protein that exhibits dihydroorotate dehydrogenase (quinone) activity (ortholog); dihydroorotate dehydrogenase activity (ortholog); FMN binding (ortholog); INVOLVED IN 'de novo' pyrimidine nucleobase biosynthetic process (ortholog); 'de novo' UMP biosynthetic process (ortholog); female pregnancy (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; de novo pyrimidine biosynthetic pathway; dihydropyrimidinase deficiency pathway; ASSOCIATED WITH beta thalassemia (ortholog); erythroleukemia (ortholog); Experimental Arthritis (ortholog); FOUND IN mitochondrial inner membrane (ortholog); mitochondrion (ortholog); neuronal cell body (ortholog) NW_004955484 4699743 4713466 + 102017238 AGCD01058230;GBDJ01191379;XM_005403527 XP_005403584 MODEL 10173066 ncrna LOC106147792 uncharacterized LOC106147792 NW_004955410 36418813 36506718 - 106147792 AGCD01011429;AGCD01011430;AGCD01011431;GBDJ01233149;XR_001232758 MODEL 10298473 ncrna LOC106147387 uncharacterized LOC106147387 NW_004955408 6144482 6147477 + 106147387 AGCD01008164;GBBH01127905;XR_001232268 MODEL 9015084 protein-coding Nudt2 nudix hydrolase 2 ENCODES a protein that exhibits bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH Breast Neoplasms (ortholog); developmental and epileptic encephalopathy 11 (ortholog); INTELLECTUAL DEVELOPMENTAL DISORDER WITH OR WITHOUT PERIPHERAL NEUROPATHY (ortholog) NW_004955472 1760046 1774539 - 102005926 AGCD01053411;GBDJ01091801;XM_005401094 XP_005401151 MODEL 9056013 ncrna LOC102029684 uncharacterized LOC102029684 NW_004955402 50582917 50613722 - 102029684 AGCD01001268;XR_259104 MODEL 8896312 ncrna LOC102005186 uncharacterized LOC102005186 NW_004955553 939259 940745 - 102005186 AGCD01072866;GBDF01291522;XR_264933 MODEL 8915565 protein-coding CUNH11orf42 chromosome unknown C11orf42 homolog FOUND IN sperm flagellum (ortholog) NW_004955414 21946935 21954111 + 102016695 AGCD01015438;GBDF01047803;XM_005380122;XM_005380123 XP_005380179;XP_005380180 MODEL 10151725 ncrna LOC106149659 uncharacterized LOC106149659 NW_004955451 14406117 14407371 - 106149659 AGCD01043552;GBDK01125709;XR_001235972 MODEL 8738801 pseudo LOC102004115 ferritin heavy chain pseudogene NW_004955535 3341451 3342152 + 102004115 AGCD01070692;XM_005410497 MODEL 8705181 ncrna LOC102016496 uncharacterized LOC102016496 NW_004955426 22212445 22224220 - 102016496 AGCD01026613;AGCD01026614;GBDF01006654;XR_261217 MODEL 10368661 protein-coding LOC106149796 chromosome unknown open reading frame, human C2orf72 NW_004955453 4408122 4419182 - 106149796 AGCD01044689;AGCD01044690;AGCD01044691;GBCQ01031908;XM_013519991 XP_013375445 MODEL 8813585 pseudo LOC102013114 transmembrane protein 54 pseudogene NW_004955435 7874595 7902075 - 102013114 AGCD01032980;AGCD01032981 MODEL 39132379 snrna U6 U6 spliceosomal RNA 8960934 pseudo LOC102022391 sorting nexin-2 pseudogene NW_004955418 10862123 10863224 + 102022391 AGCD01018988 MODEL 9052564 protein-coding LOC102004847 interferon alpha-4-like NW_004955434 23359685 23360292 - 102004847 AGCD01032705;XM_013516392 XP_013371846 MODEL 10276422 ncrna LOC106149386 uncharacterized LOC106149386 NW_004955444 17758659 17766971 - 106149386 AGCD01039223;GBDK01148500;XR_001235538 MODEL 39132897 snrna U1 U1 spliceosomal RNA 10061161 ncrna LOC106150346 uncharacterized LOC106150346 NW_004955473 10878402 10891431 + 106150346 AGCD01054117;GBDJ01233778;XR_001237108 MODEL 8970304 ncrna LOC102016838 uncharacterized LOC102016838 NW_004955520 1761193 1762822 - 102016838 AGCD01068062;GBDJ01301415;XR_264590 MODEL 8959376 protein-coding Got1 glutamic-oxaloacetic transaminase 1 ENCODES a protein that exhibits (2S)-2-aminobutanoate:2-oxoglutarate transaminase activity (ortholog); carboxylic acid binding (ortholog); L-aspartate:2-oxoglutarate transaminase activity (ortholog); INVOLVED IN cellular response to cAMP (ortholog); cellular response to glucagon stimulus (ortholog); cellular response to insulin stimulus (ortholog); PARTICIPATES IN AGAT deficiency pathway; alkaptonuria pathway; arginine and proline metabolic pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); amyloidosis (ortholog); amyotrophic lateral sclerosis (ortholog); FOUND IN axon terminus (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955507 5346937 5370072 - 102015653 AGCD01065671;GBDI01132595;XM_005407670 XP_005407727 MODEL 39131527 protein-coding TTC36 tetratricopeptide repeat domain 36 8794402 protein-coding Il1a interleukin 1 alpha ENCODES a protein that exhibits copper ion binding (ortholog); cytokine activity (ortholog); INVOLVED IN cellular response to heat (ortholog); connective tissue replacement involved in inflammatory response wound healing (ortholog); cytokine-mediated signaling pathway (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; ASSOCIATED WITH acute kidney failure (ortholog); acute myeloid leukemia (ortholog); allergic bronchopulmonary aspergillosis (ortholog); FOUND IN cell surface (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955470 1527710 1538418 + 102024893 AGCD01052644;AGCD01052645;GBDK01021553;XM_005400596 XP_005400653 MODEL 10382536 protein-coding LOC106146826 uncharacterized LOC106146826 NW_004955497 1026944 1030867 - 106146826 AGCD01062446;GBDF01227044;GBDF01249337;XM_013505449 XP_013360903 MODEL 10310912 protein-coding LOC106147651 putative olfactory receptor 7A2 NW_004955626 159615 160294 - 106147651 AGCD01077471;XM_013510161 XP_013365615 MODEL 8727994 protein-coding Lrrc75a leucine rich repeat containing 75A NW_004955467 1771857 1820707 - 102029844 AGCD01051287;AGCD01051288;AGCD01051289;GBDF01058932;GBDJ01016844;XM_013522211 XP_013377665 MODEL 9043591 protein-coding Tmem219 transmembrane protein 219 ASSOCIATED WITH spondylocostal dysostosis 5 (ortholog); FOUND IN signaling receptor complex (ortholog) NW_004955493 6987621 6999219 - 102030326 AGCD01061153;GBDI01078003;XM_005405217;XM_005405218 XP_005405274;XP_005405275 MODEL 10132168 ncrna LOC106148322 uncharacterized LOC106148322 NW_004955420 29832901 29836485 + 106148322 AGCD01021519;GBCE01089941;XR_001233668 MODEL 8974162 pseudo LOC102017256 DCC-interacting protein 13-alpha pseudogene NW_004955425 5308856 5312153 - 102017256 AGCD01025339;AGCD01025340 MODEL 8793365 protein-coding Rpn2 ribophorin II ENCODES a protein that exhibits ribosome binding (ortholog); INVOLVED IN glycoprotein biosynthetic process (ortholog); protein N-linked glycosylation (ortholog); response to xenobiotic stimulus (ortholog); ASSOCIATED WITH congenital disorder of glycosylation (ortholog); Prostatic Neoplasms (ortholog); FOUND IN autophagosome membrane (ortholog); endoplasmic reticulum (ortholog); oligosaccharyltransferase complex (ortholog) NW_004955422 24497288 24550439 - 102018104 AGCD01023220;AGCD01023221;AGCD01023222;AGCD01023223;GBCE01029632;XM_005384722;XM_005384723 XP_005384779;XP_005384780 MODEL 8759834 protein-coding Nudt21 nudix hydrolase 21 ENCODES a protein that exhibits chromatin binding (ortholog); histone deacetylase binding (ortholog); identical protein binding (ortholog); INVOLVED IN co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway (ortholog); mRNA 3'-end processing (ortholog); mRNA alternative polyadenylation (ortholog); PARTICIPATES IN 3'-end pre-mRNA processing pathway; RNA polymerase II transcription termination pathway; ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); mRNA cleavage and polyadenylation specificity factor complex (ortholog) NW_004955433 14220356 14234423 - 102015340 AGCD01031710;AGCD01031711;GBDI01064334;XM_005388349 XP_005388406 MODEL 8707420 ncrna LOC102020950 uncharacterized LOC102020950 NW_004955436 4306094 4347032 - 102020950 AGCD01033661;GBDF01043200;XR_001234965 MODEL 10322096 ncrna LOC106149660 uncharacterized LOC106149660 NW_004955451 16761318 16763170 + 106149660 AGCD01043704;GBDF01023497;XR_001235974 MODEL 10136064 ncrna LOC106148868 uncharacterized LOC106148868 NW_004955431 11971367 11980707 + 106148868 AGCD01030250;XR_001234592;XR_001234593 MODEL 8825814 protein-coding Egr3 early growth response 3 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN cell migration involved in sprouting angiogenesis (ortholog); cellular response to fibroblast growth factor stimulus (ortholog); cellular response to vascular endothelial growth factor stimulus (ortholog); ASSOCIATED WITH Ataxia (ortholog); COVID-19 (ortholog) NW_004955403 46105447 46108149 - 102014312 AGCD01002849;GBDF01192293;XM_005373688 XP_005373745 MODEL 10361305 protein-coding LOC106147505 neutrophil gelatinase-associated lipocalin-like NW_004955570 290848 294987 + 106147505 AGCD01081655;XM_013509379 XP_013364833 MODEL 8823560 protein-coding Lzts1 leucine zipper tumor suppressor 1 INVOLVED IN negative regulation of macroautophagy (ortholog); regulation of dendrite morphogenesis (ortholog); regulation of postsynapse assembly (ortholog); ASSOCIATED WITH breast carcinoma (ortholog); esophageal cancer (ortholog); Esophageal Neoplasms (ortholog); FOUND IN apical plasma membrane (ortholog); cell body (ortholog); dendritic shaft (ortholog) NW_004955403 43909722 43962965 - 102025201 AGCD01002789;GBCE01057284;XM_005373629;XM_005373630;XM_005373632;XM_013513647 XP_005373686;XP_005373687;XP_005373689;XP_013369101 MODEL 8930502 protein-coding Vcam1 vascular cell adhesion molecule 1 ENCODES a protein that exhibits cell adhesion mediator activity (ortholog); cell adhesion molecule binding (ortholog); integrin binding (ortholog); INVOLVED IN amine metabolic process (ortholog); cardiac neuron differentiation (ortholog); cell adhesion (ortholog); PARTICIPATES IN eicosanoid signaling pathway; ASSOCIATED WITH Acute Lung Injury (ortholog); Albuminuria (ortholog); Anaphylaxis (ortholog); FOUND IN alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex (ortholog); apical part of cell (ortholog); apical plasma membrane (ortholog) NW_004955435 5390745 5410025 + 102005627 AGCD01032885;AGCD01032886;GBCE01022806;XM_005388797 XP_005388854 MODEL 8967249 protein-coding Rnf19b ring finger protein 19B ENCODES a protein that exhibits ubiquitin binding (ortholog); ubiquitin protein ligase activity (ortholog); INVOLVED IN natural killer cell mediated cytotoxicity (ortholog); protein autoubiquitination (ortholog); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN cytolytic granule (ortholog); endoplasmic reticulum (ortholog); endoplasmic reticulum membrane (ortholog) NW_004955452 11179268 11190594 - 102004552 AGCD01044329;GBDF01010868;XM_013519574;XM_013519575 XP_013375028;XP_013375029 MODEL 8937522 protein-coding Gpsm1 G protein signaling modulator 1 ENCODES a protein that exhibits G-protein alpha-subunit binding (ortholog); GDP-dissociation inhibitor activity (ortholog); INVOLVED IN negative regulation of GTPase activity (ortholog); negative regulation of guanyl-nucleotide exchange factor activity (ortholog); positive regulation of macroautophagy (ortholog); ASSOCIATED WITH alcohol dependence (ortholog); Cocaine-Related Disorders (ortholog); FOUND IN cell cortex (ortholog); endoplasmic reticulum membrane (ortholog); Golgi apparatus (ortholog) NW_004955513 4363534 4387356 - 102011690 AGCD01066927;GBCE01052148;XM_005408511;XM_005408513;XM_005408516 XP_005408568;XP_005408570;XP_005408573 MODEL 10190622 protein-coding LOC106150205 serine/arginine repetitive matrix protein 1-like NW_004955468 6445621 6446648 + 106150205 AGCD01051984;GBDJ01093569;GBDJ01093570;XM_013522297 XP_013377751 MODEL 8869109 protein-coding LOC102023118 olfactory receptor 6C2-like NW_004955458 2974880 2975827 + 102023118 AGCD01047263;XM_005397505 XP_005397562 MODEL 8790873 ncrna LOC102024801 uncharacterized LOC102024801 NW_004955420 1129780 1166417 + 102024801 AGCD01020568;AGCD01020569;GBDF01177069;XR_001233714;XR_001233715 MODEL 10353112 ncrna LOC106149119 uncharacterized LOC106149119 NW_004955437 5707514 5708216 + 106149119 AGCD01034397;GBCQ01117734;XR_001235080 MODEL 10100077 ncrna LOC106148457 uncharacterized LOC106148457 NW_004955422 20830653 20831811 - 106148457 AGCD01023091;GBDI01247145;XR_001233908 MODEL 39132381 snrna U6 U6 spliceosomal RNA 8790078 ncrna LOC102020215 uncharacterized LOC102020215 NW_004955409 2720168 2720429 + 102020215 AGCD01009216;GBBH01139966;XR_259746 MODEL 8724513 protein-coding Syt5 synaptotagmin 5 ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent phospholipid binding (ortholog); clathrin binding (ortholog); INVOLVED IN regulation of calcium ion-dependent exocytosis (ortholog); FOUND IN dense core granule (ortholog); neuron projection (ortholog); neuronal cell body (ortholog) NW_004955567 1018433 1024477 + 102003705 AGCD01074453;GBDF01243336;XM_005413351 XP_005413408 MODEL 8731356 protein-coding Gcsh glycine cleavage system protein H ENCODES a protein that exhibits aminomethyltransferase activity (ortholog); enzyme binding (ortholog); INVOLVED IN glycine decarboxylation via glycine cleavage system (ortholog); PARTICIPATES IN folate cycle metabolic pathway; ASSOCIATED WITH amino acid metabolic disorder (ortholog); genetic disease (ortholog); glycine encephalopathy (ortholog); FOUND IN mitochondrion (ortholog) NW_004955522 3858156 3869730 - 102007584 AGCD01068401;AGCD01068402;GBCE01077313;GBDJ01228720;XM_013507109 XP_013362563 MODEL 9011630 protein-coding Mis18bp1 MIS18 binding protein 1 FOUND IN CENP-A recruiting complex (ortholog); nucleus (ortholog) NW_004955409 16704414 16751469 + 102006220 AGCD01009737;AGCD01009738;GBDF01188546;XM_005376853;XM_005376854;XM_013510343 XP_005376910;XP_005376911;XP_013365797 MODEL 39132900 snrna U1 U1 spliceosomal RNA 10255393 ncrna LOC106149387 uncharacterized LOC106149387 NW_004955444 1487865 1497182 - 106149387 AGCD01038726;GBCQ01169741;XR_001235539;XR_001235540;XR_001235541 MODEL 9034106 protein-coding Hdx highly divergent homeobox NW_004955529 3468132 3642886 - 102021795 AGCD01069795;AGCD01069796;AGCD01069797;AGCD01069798;AGCD01069799;AGCD01069800;GBDF01022935;XM_005410080 XP_005410137 MODEL 39134331 misc_rna Metazoa_SRP Metazoan signal recognition particle RNA 10136032 ncrna LOC106149534 uncharacterized LOC106149534 NW_004955448 4708718 4719507 - 106149534 AGCD01041351;XR_001235788 MODEL 8765206 protein-coding LOC102022035 glyoxalase domain-containing protein 4 NW_004955892 4493 13806 - 102022035 AGCD01078595;GBCB01023686;GBCE01074554;XM_005415140 XP_005415197 MODEL 10322064 ncrna LOC106147388 uncharacterized LOC106147388 NW_004955551 2101697 2134027 - 106147388 AGCD01072700;AGCD01072701;AGCD01072702;XR_001232269 MODEL 10369629 ncrna LOC106147793 uncharacterized LOC106147793 NW_004955410 35435915 35440130 - 106147793 AGCD01011411;GBDF01286226;XR_001232759 MODEL 9014799 ncrna LOC102016844 uncharacterized LOC102016844 NW_004955436 3541386 3556307 + 102016844 AGCD01033635;AGCD01033636;GBDF01189077;XR_001234977 MODEL 8847131 protein-coding Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor ENCODES a protein that exhibits beta-catenin binding (ortholog); integrin binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN actin cytoskeleton organization (ortholog); brain development (ortholog); cell-cell junction organization (ortholog); ASSOCIATED WITH acoustic neuroma (ortholog); breast cancer (ortholog); choroid plexus carcinoma (ortholog); FOUND IN adherens junction (ortholog); apical part of cell (ortholog); cell body (ortholog) NW_004955455 3862804 3950669 + 102009575 AGCD01045659;AGCD01045660;AGCD01045661;GBDI01137619;XM_005396216;XM_005396217;XM_005396218 XP_005396273;XP_005396274;XP_005396275 MODEL 8788277 protein-coding Carmil1 capping protein regulator and myosin 1 linker 1 ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN actin filament network formation (ortholog); barbed-end actin filament uncapping (ortholog); cell migration (ortholog); ASSOCIATED WITH sensorineural hearing loss (ortholog); FOUND IN cell leading edge (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955483 1463856 1770798 - 102003768 AGCD01057646;AGCD01057647;AGCD01057648;AGCD01057649;AGCD01057650;AGCD01057651;GBDF01163343;XM_005403347;XM_013503829;XM_013503830;XM_013503831;XM_013503832 XP_005403404;XP_013359283;XP_013359284;XP_013359285;XP_013359286 MODEL 8765460 protein-coding Rnf2 ring finger protein 2 ENCODES a protein that exhibits chromatin binding (ortholog); histone H2AK119 ubiquitin ligase activity (ortholog); RING-like zinc finger domain binding (ortholog); INVOLVED IN anterior/posterior axis specification (ortholog); chromatin organization (ortholog); chromatin remodeling (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH chronic pancreatitis (ortholog); Luo-Schoch-Yamamoto syndrome (ortholog); pancreatic ductal carcinoma (ortholog); FOUND IN cytoplasm (ortholog); euchromatin (ortholog); heterochromatin (ortholog) NW_004955406 23672947 23725253 + 102005891 AGCD01006181;AGCD01006182;GBBH01172087;XM_005375061;XM_005375062;XM_005375063 XP_005375118;XP_005375119;XP_005375120 MODEL 8818004 ncrna LOC102013520 uncharacterized LOC102013520 NW_004955500 5962838 5972280 + 102013520 AGCD01063865;GBDF01213566;XR_264230 MODEL 10338856 protein-coding LOC106146827 uncharacterized LOC106146827 NW_004955497 5778937 5780866 + 106146827 AGCD01062614;GBDF01094347;GBDF01120964;XM_013505452 XP_013360906 MODEL 8881796 pseudo LOC102004117 period circadian protein homolog 3-like NW_004955437 138520 142991 + 102004117 AGCD01034105 MODEL 8945232 pseudo LOC102016497 ras-related protein Rab-22A pseudogene NW_004955503 8216257 8217105 + 102016497 AGCD01064812 MODEL 8712749 protein-coding Got1l1 glutamic-oxaloacetic transaminase 1 like 1 ENCODES a protein that exhibits L-aspartate:2-oxoglutarate transaminase activity (ortholog) NW_004955463 13622781 13627165 - 102014990 AGCD01049876;GBDF01088565;XM_005398420;XM_005398421 XP_005398477;XP_005398478 MODEL 10108923 ncrna LOC106149797 uncharacterized LOC106149797 NW_004955453 4448556 4451666 + 106149797 AGCD01044691;GBDF01088114;XR_001236195 MODEL 8732058 protein-coding Tmem220 transmembrane protein 220 NW_004955467 6487936 6503178 + 102004686 AGCD01051415;AGCD01051416;GBCE01141991;GBDK01073960;XM_013522257;XM_013522258 XP_013377711;XP_013377712 MODEL 8999086 protein-coding Il1b interleukin 1 beta ENCODES a protein that exhibits cytokine activity (ortholog); integrin binding (ortholog); protein domain specific binding (ortholog); INVOLVED IN astrocyte activation (ortholog); cellular response to antibiotic (ortholog); cellular response to fatty acid (ortholog); PARTICIPATES IN interleukin-1 signaling pathway; interleukin-12 signaling pathway; interleukin-23 signaling pathway; ASSOCIATED WITH otitis media; Otitis Media with Effusion; abdominal aortic aneurysm (ortholog); FOUND IN extracellular region (ortholog); interleukin-1 receptor complex (ortholog); lysosome (ortholog) NW_004955470 1486936 1491888 + 102024552 AGCD01052642;GBCE01179444;XM_005400595 XP_005400652 MODEL 8939595 protein-coding Lrrc75b leucine rich repeat containing 75B NW_004955455 8068573 8074399 - 102015284 AGCD01045872;GBBH01208958;GBCE01155527;XM_013520451 XP_013375905 MODEL 9021151 ncrna LOC102004848 uncharacterized LOC102004848 NW_004955435 5016629 5017589 - 102004848 AGCD01032870;GBDF01300438;XR_261661 MODEL 8927721 ncrna LOC102022402 uncharacterized LOC102022402 NW_004955423 16824211 16829887 + 102022402 AGCD01023839;GBDF01074436;XR_001234119;XR_260973 MODEL 8821803 ncrna LOC102008117 uncharacterized LOC102008117 NW_004955493 654340 655511 - 102008117 AGCD01060859;GBDK01039914;XR_264062 MODEL 10237280 ncrna LOC106149661 uncharacterized LOC106149661 NW_004955451 5281160 5295524 + 106149661 AGCD01043166;GBDF01234536;XR_001235975 MODEL 10115528 ncrna LOC106150347 uncharacterized LOC106150347 NW_004955473 2713081 2793520 - 106150347 AGCD01053907;XR_001237110;XR_001237111 MODEL 8946441 protein-coding Rpp14 ribonuclease P/MRP subunit p14 ENCODES a protein that exhibits ribonuclease P activity (ortholog); ribonuclease P RNA binding (ortholog); INVOLVED IN tRNA 5'-leader removal (ortholog); PARTICIPATES IN tRNA maturation pathway; FOUND IN multimeric ribonuclease P complex (ortholog); nucleolar ribonuclease P complex (ortholog); nucleolus (ortholog) NW_004955430 1794460 1802527 - 102009971 AGCD01029135;GBDF01162002;XM_005387300;XM_005387301;XM_013515662 XP_005387357;XP_005387358;XP_013371116 MODEL 8822051 protein-coding Egr4 early growth response 4 ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN cellular response to growth factor stimulus (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH middle cerebral artery infarction (ortholog) NW_004955424 12339152 12341925 + 102015739 AGCD01024604;GBDF01288078;XM_005385561 XP_005385618 MODEL 8956041 protein-coding LOC102022759 chondroitin sulfate proteoglycan 4-like NW_004955446 12743297 12808985 + 102022759 AGCD01040243;GBCB01075890;XM_005392714 XP_005392771 MODEL 8980538 pseudo LOC102029685 neugrin pseudogene NW_004955402 34776326 34777579 + 102029685 AGCD01000870 MODEL 8753358 protein-coding LOC102005187 zinc finger protein 432 NW_004955558 575848 589065 - 102005187 AGCD01073376;GBCE01115771;XM_005412661 XP_005412718 MODEL 8956875 protein-coding CUNH11orf52 chromosome unknown C11orf52 homolog ASSOCIATED WITH Carney-Stratakis syndrome (ortholog); FOUND IN cell junction (ortholog) NW_004955412 13635088 13640604 + 102023886 AGCD01012843;GBCB01120660;XM_005378097;XM_005378098 XP_005378154;XP_005378155 MODEL 8713559 protein-coding Ttc36 tetratricopeptide repeat domain 36 INVOLVED IN central nervous system neuron development (ortholog); memory (ortholog); negative regulation of peptidyl-threonine phosphorylation (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); hepatocellular carcinoma (ortholog) NW_004955412 19670590 19672495 + 102019157 AGCD01012968;GBCQ01033714;XM_013511203 XP_013366657 MODEL 10165580 protein-coding LOC106147652 putative olfactory receptor 7A2 NW_004955626 174312 174991 - 106147652 AGCD01077474;XM_013510162 XP_013365616 MODEL 8708647 protein-coding Gda guanine deaminase ENCODES a protein that exhibits guanine deaminase activity (ortholog); INVOLVED IN deoxyguanosine catabolic process (ortholog); dGMP catabolic process (ortholog); GMP catabolic process (ortholog); PARTICIPATES IN adenine phoshoribosyltransferase deficiency pathway; adenosine monophosphate deaminase deficiency pathway; adenylosuccinate lyase deficiency pathway; ASSOCIATED WITH Animal Mammary Neoplasms (ortholog); carcinoma (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cytosol (ortholog); postsynapse (ortholog); postsynaptic cytosol (ortholog) NW_004955434 983388 1050413 - 102019310 AGCD01032047;AGCD01032048;AGCD01032049;AGCD01032050;GBBH01187473;GBCB01101187;XM_005388518 XP_005388575 MODEL 8813188 protein-coding LOC102024806 uncharacterized protein C3orf14 homolog NW_004955420 13411262 13414640 + 102024806 AGCD01020921;XM_013513335 XP_013368789 MODEL 8814664 protein-coding LOC102023119 granzyme B(G,H)-like NW_004955409 35492731 35496027 + 102023119 AGCD01010424;GBDK01074388;XM_005376991 XP_005377048 MODEL 8810878 ncrna LOC102020959 uncharacterized LOC102020959 NW_004955442 10985993 11006650 + 102020959 AGCD01037714;GBDF01125761;XR_262135 MODEL 8745090 protein-coding Nudt22 nudix hydrolase 22 ENCODES a protein that exhibits UDP-sugar diphosphatase activity (ortholog); FOUND IN nucleoplasm (ortholog) NW_004955422 20848450 20851913 - 102021774 AGCD01023094;AGCD01023095;GBDF01086382;XM_005384643;XM_013513958 XP_005384700;XP_013369412 MODEL 8832144 protein-coding Carmil2 capping protein regulator and myosin 1 linker 2 ENCODES a protein that exhibits phospholipid binding (ortholog); protein-containing complex binding (ortholog); INVOLVED IN actin filament network formation (ortholog); establishment of protein localization (ortholog); establishment or maintenance of cell polarity (ortholog); ASSOCIATED WITH combined immunodeficiency (ortholog); combined T cell and B cell immunodeficiency (ortholog); genetic disease (ortholog); FOUND IN actin cytoskeleton (ortholog); cell leading edge (ortholog); cell-cell junction (ortholog) NW_004955484 9025409 9037942 - 102008110 AGCD01058403;AGCD01058404;GBDJ01349439;GBDJ01349447;XM_013503950;XM_013503951;XM_013503952;XM_013503953 XP_013359404;XP_013359405;XP_013359406;XP_013359407 MODEL 10371143 protein-coding LOC106147506 neutrophil gelatinase-associated lipocalin-like NW_004955570 474594 492183 + 106147506 AGCD01074728;AGCD01074729;AGCD01074730;XM_013509382 XP_013364836 MODEL 39132903 snrna U1 U1 spliceosomal RNA 10162655 protein-coding LOC106150206 olfactory receptor 10R2 NW_004955468 10349436 10358714 + 106150206 AGCD01052080;AGCD01052081;XM_013522298 XP_013377752 MODEL 8874783 protein-coding Miso1 mitochondrial inner membrane subdomain organizer 1 INVOLVED IN negative regulation of ERK1 and ERK2 cascade (ortholog); negative regulation of mitochondrial fusion (ortholog); positive regulation of mitochondrial fission (ortholog); FOUND IN extracellular region (ortholog); mitochondrial inner membrane (ortholog); mitochondrion (ortholog) NW_004955448 6836631 6849024 - 102015999 AGCD01041395;GBCQ01126601;GBDK01026122;XM_005393069 XP_005393126 MODEL 8867495 protein-coding Gpsm2 G protein signaling modulator 2 ENCODES a protein that exhibits dynein complex binding (ortholog); G-protein alpha-subunit binding (ortholog); GDP-dissociation inhibitor activity (ortholog); INVOLVED IN cell-cell signaling (ortholog); establishment of mitotic spindle orientation (ortholog); maintenance of centrosome location (ortholog); ASSOCIATED WITH autosomal recessive nonsyndromic deafness (ortholog); autosomal recessive nonsyndromic deafness 7 (ortholog); Chudley-Mccullough syndrome (ortholog); FOUND IN cell cortex (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955435 12334462 12387262 + 102020701 AGCD01033144;AGCD01033145;AGCD01033146;AGCD01033147;GBDF01043863;XM_013516518 XP_013371972 MODEL 10344683 ncrna LOC106147794 uncharacterized LOC106147794 NW_004955410 35403799 35408399 - 106147794 AGCD01011411;XR_001232760 MODEL 8850806 protein-coding LOC102013115 vomeronasal type-2 receptor 116-like NW_004955524 3532203 3543838 - 102013115 AGCD01068906;XM_013507197 XP_013362651 MODEL 10372390 protein-coding LOC106148323 protein SPT2 homolog NW_004955420 16065361 16069427 - 106148323 AGCD01020987;GBDK01034693;XM_013513330 XP_013368784 MODEL 8710019 pseudo LOC102017257 60S acidic ribosomal protein P2 pseudogene NW_004955501 1411347 1416378 - 102017257 AGCD01064052 MODEL 10093330 protein-coding LOC106149120 translation initiation factor IF-2-like NW_004955437 1780498 1781548 - 106149120 AGCD01034233;GBDF01146310;GBDF01146311;XM_013516973 XP_013372427 MODEL 8728324 protein-coding Nfam1 NFAT activating protein with ITAM motif 1 ENCODES a protein that exhibits transmembrane signaling receptor activity (ortholog); INVOLVED IN B cell differentiation (ortholog); B cell receptor signaling pathway (ortholog); calcineurin-NFAT signaling cascade (ortholog); FOUND IN cell surface (ortholog); membrane (ortholog); membrane raft (ortholog) NW_004955413 27865672 27893793 - 102010890 AGCD01014536;GBCE01185127;XM_005379417;XM_013511660 XP_005379474;XP_013367114 MODEL 10169568 ncrna LOC106148458 uncharacterized LOC106148458 NW_004955422 21050678 21053063 - 106148458 AGCD01023099;GBCQ01103744;XR_001233909 MODEL 10307989 ncrna LOC106148869 uncharacterized LOC106148869 NW_004955431 16091872 16094141 + 106148869 AGCD01030368;XR_001234594 MODEL 8986462 protein-coding Gdap1 ganglioside induced differentiation associated protein 1 INVOLVED IN cellular response to vitamin D (ortholog); mitochondrial fission (ortholog); mitochondrial fusion (ortholog); PARTICIPATES IN mitochondria fission pathway; ASSOCIATED WITH autosomal recessive axonal Charcot-Marie-Tooth disease with vocal cord paresis (ortholog); axonal neuropathy (ortholog); Charcot-Marie-Tooth disease (ortholog); FOUND IN mitochondrial outer membrane (ortholog); mitochondrion (ortholog) NW_004955444 6053422 6069741 - 102018866 AGCD01038847;AGCD01038848;GBDJ01314137;XM_005392075 XP_005392132 MODEL 8745994 protein-coding Lzts2 leucine zipper tumor suppressor 2 INVOLVED IN kidney development (ortholog); negative regulation of canonical Wnt signaling pathway (ortholog); negative regulation of cell population proliferation (ortholog); ASSOCIATED WITH urinary system disease (ortholog); FOUND IN centrosome (ortholog); cytoplasm (ortholog); cytosol (ortholog) NW_004955485 9182984 9187144 - 102003243 AGCD01058750;GBDF01080037;GBDF01080041;XM_013504052 XP_013359506 MODEL 8810476 protein-coding Lrrc8a leucine rich repeat containing 8 VRAC subunit A ENCODES a protein that exhibits cyclic-GMP-AMP transmembrane transporter activity (ortholog); identical protein binding (ortholog); monoatomic anion channel activity (ortholog); INVOLVED IN aspartate transmembrane transport (ortholog); cell volume homeostasis (ortholog); chloride transmembrane transport (ortholog); ASSOCIATED WITH agammaglobulinemia (ortholog); agammaglobulinemia 5 (ortholog); FOUND IN cell surface (ortholog); lysosomal membrane (ortholog); membrane (ortholog) NW_004955570 1270710 1295658 + 102010956 AGCD01074807;GBDK01143504;XM_005413593;XM_005413595;XM_005413596;XM_005413597;XM_005413598;XM_013509413 XP_005413650;XP_005413652;XP_005413653;XP_005413654;XP_005413655;XP_013364867 MODEL 8864234 protein-coding LOC102020216 olfactory receptor 6C76 NW_004955458 2704483 2705460 - 102020216 AGCD01047240;XM_013520799 XP_013376253 MODEL 10197959 ncrna LOC106150348 uncharacterized LOC106150348 NW_004955473 5124678 5163502 + 106150348 AGCD01053967;AGCD01053968;AGCD01053969;AGCD01053970;AGCD01053971;XR_001237115 MODEL 10344701 ncrna LOC106149662 uncharacterized LOC106149662 NW_004955451 16654698 16656969 - 106149662 AGCD01043697;XR_001235976 MODEL 9046172 protein-coding Syt6 synaptotagmin 6 ENCODES a protein that exhibits calcium-dependent phospholipid binding (ortholog); calcium-dependent protein binding (ortholog); clathrin binding (ortholog); INVOLVED IN acrosomal vesicle exocytosis (ortholog); acrosome reaction (ortholog); postsynaptic dense core vesicle exocytosis (ortholog); ASSOCIATED WITH breast ductal carcinoma (ortholog); invasive ductal carcinoma (ortholog); FOUND IN cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog); glutamatergic synapse (ortholog) NW_004955435 17349971 17405526 - 102018218 AGCD01033352;AGCD01033353;AGCD01033354;GBDJ01026178;XM_005388999 XP_005389056 MODEL 9044828 protein-coding Npvf neuropeptide VF