# RGD-PIPELINE: ftp-file-extracts # MODULE: annotations-version-1.1.9 (Oct 10, 2019) # GENERATED-ON: 2024/11/30 # PURPOSE: annotations about active Squirrel objects extracted from RGD database # ONTOLOGY: VT: Vertebrate Trait Ontology # CONTACT: rgd.data@mcw.edu # FORMAT: tab delimited text # NOTES: multiple values in a single column are separated by '|' # #COLUMN INFORMATION: # #1 RGD_ID unique RGD_ID of the annotated object #2 OBJECT_SYMBOL official symbol of the annotated object #3 OBJECT_NAME official name of the annotated object #4 OBJECT_TYPE annotated object data type: one of ['gene','qtl','strain'] #5 TERM_ACC_ID ontology term accession id #6 TERM_NAME ontology term name #7 QUALIFIER optional qualifier #8 EVIDENCE evidence #9 WITH with info #10 ASPECT aspect #11 REFERENCES db references (Reference RGDID|PUBMED ID) #12 CREATED_DATE created date #13 ASSIGNED_BY assigned by #14 MESH_OMIM_ID MESH:xxx or OMIM:xxx id corresponding to RDO:xxx id found in TERM_ACC_ID column (RGD/CTD Disease Ontology annotations only) #15 CURATION_NOTES curation notes provided by RGD curators #16 ORIGINAL_REFERENCE original reference RGD_ID OBJECT_SYMBOL OBJECT_NAME OBJECT_TYPE TERM_ACC_ID TERM_NAME QUALIFIER EVIDENCE WITH ASPECT REFERENCES CREATED_DATE ASSIGNED_BY MESH_OMIM_ID CURATION_NOTES ORIGINAL_REFERENCE 12438339 Psmb7 proteasome 20S subunit beta 7 gene VT:0010463 coat/hair pigmentation trait ISO RGD:12389471 V RGD:9068941 20230128 OMIA Coat colour, harlequin PMID:18513894|PMID:21256207|PMID:31658272|PMID:3270445|PMID:34751460|PMID:35510419|PMID:3998446 12563117 Asip agouti signaling protein gene VT:0010463 coat/hair pigmentation trait ISO RGD:12191791 V RGD:9068941 20230128 OMIA Coat colour, saddle tan vs black-and-tan PMID:23519866|PMID:31658272|PMID:33672409|PMID:34385618|PMID:36427679 12563117 Asip agouti signaling protein gene VT:0010463 coat/hair pigmentation trait ISO RGD:12191791 V RGD:9068941 20231005 OMIA Coat colour, agouti PMID:12692166|PMID:15520882|PMID:15965787|PMID:17630272|PMID:21321476|PMID:21846741|PMID:22433982|PMID:22524303|PMID:23519866|PMID:31658272|PMID:32635139|PMID:34385618|PMID:34751460|PMID:35046238|PMID:35510419|PMID:35622750|PMID:36427679|PMID:37582787|PMID:37778752|PMID:8202545 12633704 Mc1r melanocortin 1 receptor gene VT:0010463 coat/hair pigmentation trait ISO RGD:12175281 V RGD:9068941 20230824 OMIA Coat colour, melanistic mask PMID:12692165|PMID:21353269|PMID:29932470|PMID:33672409|PMID:34751460|PMID:35510419|PMID:35595349|PMID:36427679|PMID:37582787 12671302 Pmel premelanosome protein gene VT:0010463 coat/hair pigmentation trait ISO RGD:12194613 V RGD:9068941 20230128 OMIA Coat colour, merle PMID:12580795|PMID:16407134|PMID:16504149|PMID:17186850|PMID:19192156|PMID:27387721|PMID:30071510|PMID:30123327|PMID:30235206|PMID:3099512|PMID:31238727|PMID:32560567|PMID:330141|PMID:340189|PMID:34370083|PMID:34751460|PMID:35510419|PMID:3998446|PMID:4031467|PMID:418699|PMID:6323572|PMID:6410614|PMID:6817463|PMID:7006993 12677219 Nr4a1 nuclear receptor subfamily 4 group A member 1 gene VT:0000183 blood pressure trait ISO RGD:620029 V RGD:9068941 20200609 RGD PMID:24722447|REF_RGD_ID:12910103 12677219 Nr4a1 nuclear receptor subfamily 4 group A member 1 gene VT:0000187 triglyceride amount ISO RGD:620029 V RGD:9068941 20200609 RGD PMID:24722447|REF_RGD_ID:12910103 12677219 Nr4a1 nuclear receptor subfamily 4 group A member 1 gene VT:0003799 macrophage migration trait ISO RGD:620029 V RGD:9068941 20200609 RGD PMID:24722447|REF_RGD_ID:12910103 12677219 Nr4a1 nuclear receptor subfamily 4 group A member 1 gene VT:0003947 cholesterol amount ISO RGD:620029 V RGD:9068941 20200609 RGD PMID:24722447|REF_RGD_ID:12910103 12677219 Nr4a1 nuclear receptor subfamily 4 group A member 1 gene VT:0005265 blood urea nitrogen amount ISO RGD:620029 V RGD:9068941 20200609 RGD PMID:24722447|REF_RGD_ID:12910103