{ "session": { "name": "GSE253009_RNAseq_expression", "description": "Auto-generated session for GSE253009 on 2026-05-23T12:14:14", "views": [ { "id": "lgv1", "type": "LinearGenomeView", "tracks": [ { "id": "F-8qwRhumS", "type": "FeatureTrack", "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8", "minimized": false, "displays": [ { "id": "uZq89S4_XC", "type": "LinearBasicDisplay", "heightPreConfig": 152, "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8-LinearBasicDisplay" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012328", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012328-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012329", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012329-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012330", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012330-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012331", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012331-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012332", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012332-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012333", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012333-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012334", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012334-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012335", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012335-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012336", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012336-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012337", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012337-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012338", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012338-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012339", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012339-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012340", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012340-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012341", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012341-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012342", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012342-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012343", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012343-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012344", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012344-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012345", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012345-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012346", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012346-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012347", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012347-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012348", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012348-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012349", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012349-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_kidney_Crl_WI_Han_M_GSM8012350", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012350-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] } ], "displayedRegions": [ { "assemblyName": "GRCr8", "refName": "Chr4", "start": 0, "end": 1000000000 } ], "bpPerPx": 1090.9315, "offsetPx": 11288.767443235438 } ], "sessionTracks": [ { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012328", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012328", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012328", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012328.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012328-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012329", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012329", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012329", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012329.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012329-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012330", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012330", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012330", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012330.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012330-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012331", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012331", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012331", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012331.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012331-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012332", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012332", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012332", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012332.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012332-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012333", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012333", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012333", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012333.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012333-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012334", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012334", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; sham surgical control condition", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012334", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012334.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012334-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012335", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012335", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; sham surgical control condition", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012335", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012335.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012335-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012336", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012336", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; sham surgical control condition", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012336", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012336.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012336-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012337", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012337", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; sham surgical control condition", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012337", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012337.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012337-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012338", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012338", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; sham surgical control condition", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012338", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012338.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012338-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012339", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012339", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012339", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012339.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012339-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012340", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012340", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012340", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012340.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012340-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012341", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012341", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012341", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012341.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012341-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012342", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012342", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012342", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012342.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012342-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012343", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012343", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012343", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012343.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012343-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012344", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012344", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012344", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012344.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012344-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012345", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012345", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012345", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012345.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012345-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012346", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012346", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012346", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012346.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012346-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012347", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012347", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; sham surgical control condition", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012347", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012347.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012347-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012348", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012348", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; sham surgical control condition", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012348", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012348.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012348-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012349", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012349", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; 5/6 nephrectomy", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012349", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012349.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012349-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012350", "name": "RNAseq_kidney_Crl_WI_Han_M_GSM8012350", "category": [ "RNA-Seq", "kidney", "Crl_WI_Han" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "adult; sham surgical control condition", "Tissue": "kidney", "Strain": "Crl_WI_Han", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=2308816", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE253009", "Project Title": "Identification of mechanistic chronic kidney disease biomarkers by comprehensive bulk RNA-seq transcriptomics and SWATH proteomics of the rat sub-total nephrectomy model of kidney fibrosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE253009", "Project Accession ID": "GSE253009", "Sample Accession ID": "GSM8012350", "PubMed ID": "PMID:40169735", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE253009/Genome-wide_read_coverage_BigWig_files/RNAseq_kidney_Crl_WI_Han_M_GSM8012350.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_kidney_Crl_WI_Han_M_GSM8012350-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] } ] } }