{ "session": { "name": "GSE252875_RNAseq_expression", "description": "Auto-generated combined session for GSE252875 on 2026-06-05T11:08:01", "views": [ { "id": "lgv1", "type": "LinearGenomeView", "tracks": [ { "id": "F-8qwRhumS", "type": "FeatureTrack", "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8", "minimized": false, "displays": [ { "id": "uZq89S4_XC", "type": "LinearBasicDisplay", "heightPreConfig": 152, "configuration": "Rat GRCr8 (rn8) Genes and Transcripts-GRCr8-LinearBasicDisplay" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009657", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009657-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009658", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009658-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009659", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009659-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009660", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009660-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009661", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009661-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009662", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009662-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009663", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009663-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009664", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009664-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009665", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009665-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009666", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009666-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009667", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009667-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009668", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009668-LinearWiggleDisplay", "color": "#2ca02c", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009669", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009669-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009670", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009670-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009671", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009671-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009672", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009672-LinearWiggleDisplay", "color": "#d62728", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009687", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009687-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009688", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009688-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009689", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009689-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009690", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009690-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009691", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009691-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009692", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009692-LinearWiggleDisplay", "color": "#1f77b4", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009693", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009693-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009694", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009694-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009695", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009695-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009696", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009696-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009697", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009697-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "configuration": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009698", "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009698-LinearWiggleDisplay", "color": "#ff7f0e", "defaultRendering": "xyplot" } ] } ], "displayedRegions": [ { "assemblyName": "GRCr8", "refName": "Chr4", "start": 0, "end": 1000000000 } ], "bpPerPx": 1090.9315, "offsetPx": 11288.767443235438 } ], "sessionTracks": [ { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009657", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009657", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009657", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009657.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009657-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009658", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009658", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009658", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009658.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009658-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009659", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009659", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009659", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009659.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009659-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009660", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009660", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009660", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009660.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009660-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009661", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009661", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009661", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009661.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009661-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009662", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009662", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009662", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009662.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009662-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009663", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009663", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009663", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009663.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009663-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009664", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009664", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009664", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009664.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009664-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009665", "name": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009665", "category": [ "RNA-Seq", "brain", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "brain", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009665", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009665.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009665-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009666", "name": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009666", "category": [ "RNA-Seq", "brain", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "brain", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009666", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009666.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009666-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009667", "name": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009667", "category": [ "RNA-Seq", "brain", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "brain", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009667", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009667.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009667-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009668", "name": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009668", "category": [ "RNA-Seq", "brain", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "brain", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009668", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009668.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009668-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#2ca02c" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009669", "name": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009669", "category": [ "RNA-Seq", "brain", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "brain", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009669", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009669.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009669-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009670", "name": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009670", "category": [ "RNA-Seq", "brain", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "brain", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009670", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009670.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009670-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009671", "name": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009671", "category": [ "RNA-Seq", "brain", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "brain", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009671", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009671.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009671-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009672", "name": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009672", "category": [ "RNA-Seq", "brain", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "brain", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_150bp", "Sample Accession ID": "GSM8009672", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009672.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_brain_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009672-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#d62728" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#d62728" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009687", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009687", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_138bp", "Sample Accession ID": "GSM8009687", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009687.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009687-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009688", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009688", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_138bp", "Sample Accession ID": "GSM8009688", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009688.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009688-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009689", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009689", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_138bp", "Sample Accession ID": "GSM8009689", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009689.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009689-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009690", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009690", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_138bp", "Sample Accession ID": "GSM8009690", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009690.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009690-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009691", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009691", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_138bp", "Sample Accession ID": "GSM8009691", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009691.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009691-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009692", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009692", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616336063", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_138bp", "Sample Accession ID": "GSM8009692", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009692.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_NeuN-Cre_Ilas_M_GSM8009692-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#1f77b4" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009693", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009693", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_138bp", "Sample Accession ID": "GSM8009693", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009693.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009693-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009694", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009694", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_138bp", "Sample Accession ID": "GSM8009694", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009694.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009694-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009695", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009695", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_138bp", "Sample Accession ID": "GSM8009695", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009695.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009695-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009696", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009696", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_138bp", "Sample Accession ID": "GSM8009696", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009696.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009696-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009697", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009697", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "M", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_138bp", "Sample Accession ID": "GSM8009697", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009697.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009697-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] }, { "type": "QuantitativeTrack", "trackId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009698", "name": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009698", "category": [ "RNA-Seq", "lumbar_spinal_cord", "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas" ], "assemblyNames": [ "GRCr8" ], "metadata": { "Sample Characteristic": "90.0d;90.0 days control condition", "Tissue": "lumbar_spinal_cord", "Strain": "SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas", "RGD Strain Report": "https://rgd.mcw.edu/rgdweb/report/strain/main.html?id=616335894", "Sex": "M", "Computed Sex": "F", "RGD Metadata Report": "https://rgd.mcw.edu/rgdweb/report/expressionStudy/main.html?geoAcc=GSE252875", "Project Title": "Neuronal Deficiency of Cytochrome c Oxidase Engineered by Mitochondrial DNA Editing Recapitulates Amyotrophic Lateral Sclerosis", "Project Repository Link": "https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE252875", "Project Accession ID": "GSE252875_138bp", "Sample Accession ID": "GSM8009698", "PubMed ID": "PMID:40069360", "Data Processing": "HPC RGD workflow", "Read alignment": "STAR v2.7.10b", "Genome version": "GCF_036323735.1 GRCr8", "Expression Quantification": "RSEM v1.3.1" }, "adapter": { "type": "BigWigAdapter", "bigWigLocation": { "locationType": "UriLocation", "uri": "https://download.rgd.mcw.edu/expression/GSE252875/Genome-wide_read_coverage_BigWig_files/RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009698.bigwig" } }, "displays": [ { "type": "LinearWiggleDisplay", "displayId": "RNAseq_lumbar_spinal_cord_SD-ROSA26_em1_CAG-DdCBE-Mt-co3_Ilas_M_GSM8009698-LinearWiggleDisplay", "renderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" }, "renderers": { "XYPlotRenderer": { "type": "XYPlotRenderer", "color1": "#ff7f0e" } }, "defaultRendering": "xyplot" } ] } ] } }