Workflow: expression values from HPC RGD workflow (processed before workflow 2.1); computed sex, strand and library prep added by RGD attribute backfill 1.0 (2026-10-16) using the workflow 2.1 rules. Note: ComputedSex is called from sex-gene expression: R = (Xist TPM + 1) / (median TPM of Uty, Ddx3y, Kdm5d and Eif2s3y + 1); R >= 10 is called F, R <= 1 is called M, and other values, or samples where Xist and the Y-gene median are both below 1 TPM, are Undetermined. Females express Xist and males the Y-linked genes. Sry is reported but not used in the calculation. XYRatio (X:Y read coverage) is shown for reference only. Agreement compares ComputedSex with InputSex (submitted to GEO).
SampleID	InputSex	ComputedSex	XYRatio	Agreement	Xist	Uty	Sry	Ddx3y	Kdm5d	Eif2s3y	ComputedStrand	ComputedLibraryPrep	PctMRNA	PctIntronic	PctIntergenic	PctRibosomal	UniqPct	MultiPct	TooShortPct	NonPolyA_perM	LibraryPrepRule	LibraryPrepQC	LibraryPrepReason
GSM6765826	M	M	NA	Agree	0.08	9.24	0.00	24.84	7.62	32.12	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.785635	0.113619	0.073596	0.02715	72.85	8.33	17.18	7146	LP2 (2026-09-30)	PASS	NonPolyA_perM 7146 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765827	F	F	NA	Agree	28.53	0.09	0.00	0.43	0.12	0.43	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.783499	0.109293	0.075196	0.032013	70.42	9.05	18.66	8513	LP2 (2026-09-30)	PASS	NonPolyA_perM 8513 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765828	M	M	NA	Agree	0.12	7.79	0.00	24.55	8.24	26.46	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.548014	0.316703	0.07957	0.055713	72.79	10.50	14.73	7272	LP2 (2026-09-30)	PASS	NonPolyA_perM 7272 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765829	F	F	NA	Agree	136.53	0.04	0.00	0.16	0.02	0.09	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.490757	0.392458	0.078742	0.038042	76.65	8.73	12.54	11393	LP2 (2026-09-30)	PASS	NonPolyA_perM 11393 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765830	M	M	NA	Agree	6.35	17.58	0.00	35.39	18.81	32.65	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.370557	0.479338	0.066415	0.083689	73.36	10.87	14.09	14690	LP2 (2026-09-30)	PASS	NonPolyA_perM 14690 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765831	F	F	NA	Agree	89.90	1.71	0.00	3.70	1.34	3.31	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.430412	0.427313	0.06943	0.072845	72.44	10.43	15.40	15555	LP2 (2026-09-30)	PASS	NonPolyA_perM 15555 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765832	M	M	NA	Agree	0.27	7.46	0.00	25.85	8.11	30.42	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.661774	0.265624	0.061824	0.010778	75.79	6.64	16.15	3892	LP2 (2026-09-30)	PASS	NonPolyA_perM 3892 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765833	F	F	NA	Agree	84.99	0.01	0.00	0.09	0.02	0.15	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.570454	0.338967	0.069981	0.020598	75.78	7.36	15.23	7708	LP2 (2026-09-30)	PASS	NonPolyA_perM 7708 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765834	M	M	NA	Agree	4.16	8.94	0.09	27.90	10.32	24.18	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.481552	0.413228	0.079682	0.025538	71.06	7.50	19.29	10795	LP2 (2026-09-30)	PASS	NonPolyA_perM 10795 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765835	F	F	NA	Agree	133.43	0.56	0.00	1.56	0.46	1.00	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.492849	0.410512	0.08144	0.0152	71.69	6.89	19.16	12215	LP2 (2026-09-30)	PASS	NonPolyA_perM 12215 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765836	M	M	NA	Agree	0.15	10.84	0.00	29.44	9.88	33.35	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.484089	0.423222	0.081469	0.01122	75.65	5.52	16.49	8835	LP2 (2026-09-30)	PASS	NonPolyA_perM 8835 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765837	F	F	NA	Agree	53.41	0.04	0.00	0.16	0.03	0.21	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.494406	0.410031	0.077643	0.01792	73.87	5.85	18.10	7989	LP2 (2026-09-30)	PASS	NonPolyA_perM 7989 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765838	M	M	NA	Agree	0.97	8.00	0.00	27.02	8.35	32.27	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.502074	0.393092	0.086918	0.017915	75.22	6.21	16.41	7911	LP2 (2026-09-30)	PASS	NonPolyA_perM 7911 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765839	F	F	NA	Agree	51.78	0.53	0.00	1.71	0.49	1.71	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.489088	0.408002	0.080759	0.022151	75.21	5.93	16.77	6800	LP2 (2026-09-30)	PASS	NonPolyA_perM 6800 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765840	M	M	NA	Agree	0.10	10.49	0.00	25.55	10.03	26.25	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.42551	0.482485	0.084421	0.007583	78.52	5.29	13.75	11315	LP2 (2026-09-30)	PASS	NonPolyA_perM 11315 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765841	F	F	NA	Agree	46.87	0.04	0.00	0.13	0.05	0.00	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.500731	0.400521	0.084708	0.014041	75.77	5.81	16.17	8598	LP2 (2026-09-30)	PASS	NonPolyA_perM 8598 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765842	M	M	NA	Agree	0.27	7.36	0.00	27.52	7.66	36.63	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.518582	0.364323	0.100735	0.016361	75.56	7.56	14.18	8501	LP2 (2026-09-30)	PASS	NonPolyA_perM 8501 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765843	F	F	NA	Agree	31.85	0.14	0.00	0.29	0.09	0.71	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.511554	0.367523	0.105664	0.015259	73.79	7.81	15.79	9352	LP2 (2026-09-30)	PASS	NonPolyA_perM 9352 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765844	M	F	NA	Conflict	26.36	0.08	0.00	0.23	0.06	0.32	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.579303	0.28972	0.111577	0.0194	73.32	9.75	14.09	8108	LP2 (2026-09-30)	PASS	NonPolyA_perM 8108 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765845	F	M	NA	Conflict	0.10	4.93	0.00	23.62	5.37	28.84	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.576449	0.285822	0.116264	0.021466	69.47	9.85	17.98	9147	LP2 (2026-09-30)	PASS	NonPolyA_perM 9147 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765846	M	M	NA	Agree	4.15	7.93	0.00	23.98	6.54	20.21	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.591893	0.266562	0.13184	0.009705	67.43	12.19	16.99	17004	LP2 (2026-09-30)	PASS	NonPolyA_perM 17004 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765847	F	F	NA	Agree	54.03	0.78	0.00	2.49	0.59	1.86	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.602876	0.261299	0.122122	0.013704	61.99	10.56	23.39	14264	LP2 (2026-09-30)	PASS	NonPolyA_perM 14264 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765848	M	M	NA	Agree	7.69	7.32	0.00	27.21	8.51	24.81	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.55771	0.325183	0.091381	0.025727	68.46	8.49	20.32	10515	LP2 (2026-09-30)	PASS	NonPolyA_perM 10515 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765849	F	F	NA	Agree	95.62	0.14	0.00	0.12	0.09	0.26	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.533873	0.357642	0.077631	0.030854	68.93	7.57	20.54	9122	LP2 (2026-09-30)	PASS	NonPolyA_perM 9122 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765850	M	M	NA	Agree	0.41	2.06	0.00	6.24	1.75	6.96	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.693871	0.12521	0.146632	0.034288	53.01	26.33	15.09	8932	LP2 (2026-09-30)	PASS	NonPolyA_perM 8932 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765851	F	Undetermined	NA	Conflict	7.09	0.20	0.00	0.48	0.19	0.55	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.692879	0.128423	0.143966	0.034732	49.12	27.03	17.80	8861	LP2 (2026-09-30)	PASS	NonPolyA_perM 8861 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765852	M	M	NA	Agree	0.31	5.43	0.00	18.67	5.04	22.89	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.620766	0.251708	0.107517	0.020009	71.42	10.66	15.49	11101	LP2 (2026-09-30)	PASS	NonPolyA_perM 11101 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765853	F	F	NA	Agree	28.35	0.01	0.00	0.09	0.03	0.09	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.64313	0.219855	0.114132	0.022882	72.23	12.24	12.92	11703	LP2 (2026-09-30)	PASS	NonPolyA_perM 11703 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765854	M	M	NA	Agree	4.62	20.12	0.00	38.83	14.20	39.40	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.518941	0.369103	0.104022	0.007933	80.85	8.72	7.53	21134	LP2 (2026-09-30)	PASS	NonPolyA_perM 21134 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765855	F	F	NA	Agree	86.76	1.29	0.00	2.40	0.81	2.41	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.505205	0.386953	0.10281	0.005032	74.59	7.40	15.11	23589	LP2 (2026-09-30)	PASS	NonPolyA_perM 23589 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765856	M	M	NA	Agree	0.31	8.20	0.00	20.09	7.75	19.53	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.627234	0.269312	0.089313	0.014142	75.26	8.25	14.37	7394	LP2 (2026-09-30)	PASS	NonPolyA_perM 7394 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765857	F	F	NA	Agree	71.30	0.02	0.00	0.02	0.01	0.05	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.614481	0.284481	0.083064	0.017974	69.18	7.29	21.17	8588	LP2 (2026-09-30)	PASS	NonPolyA_perM 8588 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765858	M	M	NA	Agree	0.07	8.20	0.00	20.36	7.41	33.04	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.614111	0.26692	0.093321	0.025647	81.70	10.05	6.29	8522	LP2 (2026-09-30)	PASS	NonPolyA_perM 8522 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765859	F	F	NA	Agree	62.71	0.04	0.00	0.07	0.03	0.05	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.597528	0.288048	0.106522	0.007901	81.09	8.93	7.27	12037	LP2 (2026-09-30)	PASS	NonPolyA_perM 12037 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765860	M	F	NA	Conflict	37.05	0.00	0.00	0.05	0.01	0.03	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.734602	0.166668	0.094103	0.004627	78.51	11.67	7.59	5877	LP2 (2026-09-30)	PASS	NonPolyA_perM 5877 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765861	F	M	NA	Conflict	0.17	4.92	0.00	21.15	4.98	17.41	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.706511	0.189629	0.078602	0.025258	81.47	11.22	5.41	5446	LP2 (2026-09-30)	PASS	NonPolyA_perM 5446 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765862	M	M	NA	Agree	0.20	9.43	0.00	24.82	10.56	38.00	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.655608	0.208463	0.110601	0.025328	74.78	14.84	7.53	22287	LP2 (2026-09-30)	PASS	NonPolyA_perM 22287 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765863	F	F	NA	Agree	38.94	0.02	0.00	0.09	0.03	0.11	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.634403	0.270835	0.083835	0.010927	82.23	8.88	6.88	13953	LP2 (2026-09-30)	PASS	NonPolyA_perM 13953 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765864	M	M	NA	Agree	0.23	4.15	0.00	11.82	5.48	21.42	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.63542	0.144022	0.073013	0.147546	67.64	22.20	8.30	6108	LP2 (2026-09-30)	PASS	NonPolyA_perM 6108 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765865	F	F	NA	Agree	24.10	0.00	0.00	0.05	0.00	0.05	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.806239	0.09946	0.072599	0.021702	77.15	12.25	8.41	6316	LP2 (2026-09-30)	PASS	NonPolyA_perM 6316 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765866	M	M	NA	Agree	0.29	7.24	0.00	18.44	10.88	32.89	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.638059	0.140555	0.060662	0.160723	68.27	19.58	10.78	5865	LP2 (2026-09-30)	PASS	NonPolyA_perM 5865 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765867	F	F	NA	Agree	29.83	0.03	0.00	0.04	0.03	0.14	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.759578	0.113101	0.063851	0.063471	79.64	12.07	6.95	5456	LP2 (2026-09-30)	PASS	NonPolyA_perM 5456 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765868	M	M	NA	Agree	0.13	7.48	0.00	22.27	15.38	40.60	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.705737	0.102698	0.063048	0.128516	70.26	16.82	11.59	6134	LP2 (2026-09-30)	PASS	NonPolyA_perM 6134 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765869	F	F	NA	Agree	18.74	0.04	0.00	0.06	0.06	0.11	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.575988	0.084979	0.053848	0.285185	60.40	30.68	7.65	6782	LP2 (2026-09-30)	PASS	NonPolyA_perM 6782 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765870	M	M	NA	Agree	0.03	7.68	0.00	28.53	6.06	28.88	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.711864	0.204667	0.062877	0.020592	79.27	8.37	10.72	4107	LP2 (2026-09-30)	PASS	NonPolyA_perM 4107 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765871	F	F	NA	Agree	29.53	0.05	0.00	0.18	0.06	0.26	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.711778	0.2186	0.062142	0.00748	81.99	6.59	9.75	3772	LP2 (2026-09-30)	PASS	NonPolyA_perM 3772 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765872	M	M	NA	Agree	0.16	7.03	0.16	25.57	13.39	53.59	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.79001	0.110822	0.066631	0.032537	77.78	8.93	11.64	5236	LP2 (2026-09-30)	PASS	NonPolyA_perM 5236 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765873	F	F	NA	Agree	40.55	0.05	0.00	0.10	0.06	0.20	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.767698	0.129106	0.070699	0.032497	76.46	8.88	13.01	5854	LP2 (2026-09-30)	PASS	NonPolyA_perM 5854 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765874	M	M	NA	Agree	0.25	7.52	0.00	22.14	9.18	26.58	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.692678	0.201649	0.082587	0.023085	68.23	12.31	17.36	10120	LP2 (2026-09-30)	PASS	NonPolyA_perM 10120 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765875	F	F	NA	Agree	34.99	0.00	0.00	0.00	0.00	0.00	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.671492	0.222642	0.083022	0.022844	67.09	12.38	18.43	10314	LP2 (2026-09-30)	PASS	NonPolyA_perM 10314 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765876	M	M	NA	Agree	0.08	5.87	0.00	22.27	5.77	29.21	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.702301	0.19554	0.079885	0.022273	76.50	9.81	11.75	5509	LP2 (2026-09-30)	PASS	NonPolyA_perM 5509 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765877	F	F	NA	Agree	30.95	0.00	0.00	0.07	0.02	0.05	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.69931	0.194358	0.083984	0.022348	74.70	10.15	13.10	6206	LP2 (2026-09-30)	PASS	NonPolyA_perM 6206 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765878	M	M	NA	Agree	0.37	8.12	0.00	29.25	9.28	26.71	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.585175	0.304296	0.087091	0.023438	77.65	9.36	10.70	7891	LP2 (2026-09-30)	PASS	NonPolyA_perM 7891 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765879	F	F	NA	Agree	61.19	0.03	0.00	0.07	0.04	0.10	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.597197	0.285017	0.08576	0.032026	73.38	9.64	14.73	7592	LP2 (2026-09-30)	PASS	NonPolyA_perM 7592 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765880	M	M	NA	Agree	0.07	5.38	0.00	23.99	10.78	45.22	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.78537	0.081845	0.073226	0.059559	70.85	11.19	16.39	6540	LP2 (2026-09-30)	PASS	NonPolyA_perM 6540 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765881	F	F	NA	Agree	28.96	0.02	0.00	0.14	0.02	0.09	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.801142	0.087504	0.06778	0.043574	70.29	9.15	19.19	5778	LP2 (2026-09-30)	PASS	NonPolyA_perM 5778 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765882	M	M	NA	Agree	2.73	9.71	0.00	30.98	15.03	32.51	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.601093	0.291181	0.08998	0.017745	76.88	8.72	11.81	12707	LP2 (2026-09-30)	PASS	NonPolyA_perM 12707 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765883	F	F	NA	Agree	49.17	0.02	0.00	0.07	0.03	0.07	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.590826	0.300778	0.085721	0.022674	77.83	8.89	10.68	11896	LP2 (2026-09-30)	PASS	NonPolyA_perM 11896 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765884	M	M	NA	Agree	0.36	4.13	0.00	33.80	3.96	26.29	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.740045	0.143664	0.058184	0.058107	73.89	10.80	13.59	4848	LP2 (2026-09-30)	PASS	NonPolyA_perM 4848 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765885	F	F	NA	Agree	26.07	0.12	0.00	0.41	0.11	0.29	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.734129	0.150854	0.056281	0.058736	74.15	10.54	13.65	4446	LP2 (2026-09-30)	PASS	NonPolyA_perM 4446 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765886	M	M	NA	Agree	0.06	2.87	0.00	6.52	1.46	21.22	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.744027	0.146444	0.09812	0.011409	80.11	7.61	8.69	4771	LP2 (2026-09-30)	PASS	NonPolyA_perM 4771 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765887	M	M	NA	Agree	0.59	7.16	0.00	22.35	9.29	28.59	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.584025	0.268825	0.119171	0.027978	74.22	12.18	9.96	10093	LP2 (2026-09-30)	PASS	NonPolyA_perM 10093 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765888	F	F	NA	Agree	87.27	0.00	0.00	0.00	0.00	0.00	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.418102	0.365117	0.095111	0.12167	67.14	18.10	11.87	21310	LP2 (2026-09-30)	PASS	NonPolyA_perM 21310 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765889	F	F	NA	Agree	87.12	0.01	0.00	0.02	0.01	0.00	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.538297	0.337637	0.082611	0.041454	73.18	9.99	13.87	14131	LP2 (2026-09-30)	PASS	NonPolyA_perM 14131 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765890	M	Undetermined	NA	Conflict	3.72	3.63	0.00	4.74	2.25	3.36	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.092863	0.111987	0.024164	0.770986	16.35	62.77	20.18	11296	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 11296 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765891	F	Undetermined	NA	Conflict	26.57	3.16	0.00	4.86	1.56	3.86	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.145205	0.186129	0.034075	0.634591	25.47	50.72	22.93	9492	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 9492 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765892	M	M	NA	Agree	0.10	1.48	0.00	4.55	1.49	4.32	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.113459	0.066977	0.013411	0.806153	10.80	59.82	28.95	3407	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 3407 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765893	F	F	NA	Agree	11.45	0.01	0.00	0.02	0.00	0.00	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.088043	0.055495	0.011469	0.844992	8.94	65.86	24.83	3289	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 3289 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765894	M	M	NA	Agree	0.03	1.12	0.00	3.10	0.85	3.36	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.090819	0.055095	0.01433	0.839756	8.36	61.63	29.54	4158	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 4158 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765895	F	F	NA	Agree	16.69	0.00	0.00	0.04	0.00	0.00	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.115657	0.066411	0.01858	0.799351	10.59	57.92	30.88	4976	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 4976 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765896	M	M	NA	Agree	0.14	1.96	0.00	5.07	1.97	3.94	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.078345	0.072968	0.016403	0.832284	9.40	62.34	27.69	8065	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 8065 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765897	F	F	NA	Agree	16.22	0.00	0.00	0.00	0.00	0.00	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.086188	0.070106	0.01949	0.824216	9.52	62.23	27.55	10107	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 10107 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765898	M	F	NA	Conflict	23.41	0.45	0.00	0.79	0.35	0.62	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.089635	0.076833	0.013526	0.820006	10.03	59.56	30.02	6019	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 6019 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765899	F	Undetermined	NA	Conflict	11.33	1.11	0.00	2.82	0.98	2.53	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.097563	0.07594	0.013351	0.813145	10.93	59.03	29.70	4596	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 4596 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765900	M	M	NA	Agree	0.06	1.07	0.00	3.46	1.31	3.13	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.115513	0.058525	0.011223	0.81474	10.16	58.33	31.15	2686	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 2686 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765901	F	F	NA	Agree	15.05	0.00	0.00	0.04	0.00	0.03	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.142674	0.062227	0.01223	0.78287	12.43	58.16	29.02	2312	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 2312 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765902	M	Undetermined	NA	Conflict	0.00	0.27	0.00	1.17	0.24	1.17	NONE	RRNA_DEPLETED	0.058934	0.028701	0.011281	0.901084	5.10	67.18	27.35	1022	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 1022 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765903	F	F	NA	Agree	29.18	0.00	0.00	0.00	0.00	0.00	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.123206	0.084034	0.022211	0.770549	13.80	57.48	28.03	12561	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 12561 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765904	M	Undetermined	NA	Conflict	0.01	0.49	0.00	0.54	0.26	0.60	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.108253	0.032491	0.008775	0.850481	5.72	63.15	30.78	1479	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 1479 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765905	F	Undetermined	NA	Conflict	1.72	0.00	0.00	0.00	0.00	0.00	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.082404	0.027944	0.008272	0.881381	5.06	66.64	27.95	1751	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 1751 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765906	M	M	NA	Agree	0.25	7.06	0.00	19.07	6.20	21.58	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.57767	0.286177	0.092011	0.044143	72.40	13.08	12.05	9626	LP2 (2026-09-30)	PASS	NonPolyA_perM 9626 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765907	F	F	NA	Agree	53.62	0.14	0.00	0.33	0.10	0.32	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.652975	0.255691	0.080551	0.010784	75.69	7.55	14.88	6628	LP2 (2026-09-30)	PASS	NonPolyA_perM 6628 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765908	M	M	NA	Agree	0.18	9.55	0.00	27.85	8.69	31.46	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.531023	0.352327	0.088788	0.027863	76.18	8.62	13.15	9387	LP2 (2026-09-30)	PASS	NonPolyA_perM 9387 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765909	F	F	NA	Agree	103.29	0.23	0.00	0.42	0.16	0.42	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.521718	0.374791	0.087436	0.016055	80.55	7.62	9.58	9885	LP2 (2026-09-30)	PASS	NonPolyA_perM 9885 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765910	M	M	NA	Agree	0.21	11.92	0.00	35.63	8.14	37.41	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.53372	0.364574	0.083172	0.018535	79.54	7.32	11.03	9592	LP2 (2026-09-30)	PASS	NonPolyA_perM 9592 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765911	F	F	NA	Agree	129.71	0.27	0.00	0.67	0.14	0.32	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.492865	0.401972	0.078535	0.026628	80.91	7.16	9.95	8990	LP2 (2026-09-30)	PASS	NonPolyA_perM 8990 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765912	M	M	NA	Agree	0.05	1.01	0.00	3.50	0.93	2.64	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.664216	0.059868	0.110106	0.16581	46.69	41.48	5.71	4148	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 4148 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6765913	F	F	NA	Agree	10.16	0.01	0.00	0.01	0.01	0.02	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.661194	0.062727	0.109779	0.166301	44.71	42.82	6.10	3930	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 3930 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not