Workflow: expression values from HPC RGD workflow (processed before workflow 2.1); computed sex, strand and library prep added by RGD attribute backfill 1.0 (2026-10-21) using the workflow 2.1 rules. Note: ComputedSex is called from sex-gene expression: R = (Xist TPM + 1) / (median TPM of Uty, Ddx3y, Kdm5d and Eif2s3y + 1); R >= 10 is called F, R <= 1 is called M, and other values, or samples where Xist and the Y-gene median are both below 1 TPM, are Undetermined. Females express Xist and males the Y-linked genes. Sry is reported but not used in the calculation. XYRatio (X:Y read coverage) is shown for reference only. Agreement compares ComputedSex with InputSex (submitted to GEO).
SampleID	InputSex	ComputedSex	XYRatio	Agreement	Xist	Uty	Sry	Ddx3y	Kdm5d	Eif2s3y	ComputedStrand	ComputedLibraryPrep	PctMRNA	PctIntronic	PctIntergenic	PctRibosomal	UniqPct	MultiPct	TooShortPct	NonPolyA_perM	LibraryPrepRule	LibraryPrepQC	LibraryPrepReason
GSM6065773	F	F	NA	Agree	56.29	0.00	0.00	0.00	0.00	0.00	NONE	POLYA	0.942993	0.027456	0.024343	0.005208	94.21	1.99	3.58	40	LP2 (2026-09-30)	PASS	NonPolyA_perM 40 <= 350: non-polyadenylated small RNAs removed, as oligo-dT (polyA) selection does
GSM6065774	F	F	NA	Agree	44.25	0.00	0.00	0.00	0.00	0.00	NONE	POLYA	0.946062	0.025399	0.02362	0.004919	94.68	1.86	3.32	26	LP2 (2026-09-30)	PASS	NonPolyA_perM 26 <= 350: non-polyadenylated small RNAs removed, as oligo-dT (polyA) selection does
GSM6065775	F	F	NA	Agree	56.31	0.00	0.00	0.00	0.00	0.00	NONE	POLYA	0.935923	0.034296	0.027163	0.002619	95.53	1.80	2.44	61	LP2 (2026-09-30)	PASS	NonPolyA_perM 61 <= 350: non-polyadenylated small RNAs removed, as oligo-dT (polyA) selection does
GSM6065776	F	F	NA	Agree	76.14	0.00	0.00	0.00	0.00	0.00	NONE	POLYA	0.930893	0.03479	0.029112	0.005206	94.33	2.64	2.86	73	LP2 (2026-09-30)	PASS	NonPolyA_perM 73 <= 350: non-polyadenylated small RNAs removed, as oligo-dT (polyA) selection does
GSM6065777	F	F	NA	Agree	96.69	0.00	0.00	0.00	0.00	0.00	NONE	POLYA	0.9238	0.038549	0.028359	0.009292	95.26	2.51	2.07	61	LP2 (2026-09-30)	PASS	NonPolyA_perM 61 <= 350: non-polyadenylated small RNAs removed, as oligo-dT (polyA) selection does
GSM6065778	F	F	NA	Agree	62.26	0.00	0.00	0.00	0.00	0.00	NONE	POLYA	0.937325	0.029742	0.025303	0.00763	95.03	2.01	2.84	42	LP2 (2026-09-30)	PASS	NonPolyA_perM 42 <= 350: non-polyadenylated small RNAs removed, as oligo-dT (polyA) selection does