Workflow: expression values from HPC RGD workflow (processed before workflow 2.1); computed sex, strand and library prep added by RGD attribute backfill 1.0 (2026-10-22) using the workflow 2.1 rules. Note: ComputedSex is called from sex-gene expression: R = (Xist TPM + 1) / (median TPM of Uty, Ddx3y, Kdm5d and Eif2s3y + 1); R >= 10 is called F, R <= 1 is called M, and other values, or samples where Xist and the Y-gene median are both below 1 TPM, are Undetermined. Females express Xist and males the Y-linked genes. Sry is reported but not used in the calculation. XYRatio (X:Y read coverage) is shown for reference only. Agreement compares ComputedSex with InputSex (submitted to GEO).
SampleID	InputSex	ComputedSex	XYRatio	Agreement	Xist	Uty	Sry	Ddx3y	Kdm5d	Eif2s3y	ComputedStrand	ComputedLibraryPrep	PctMRNA	PctIntronic	PctIntergenic	PctRibosomal	UniqPct	MultiPct	TooShortPct	NonPolyA_perM	LibraryPrepRule	LibraryPrepQC	LibraryPrepReason
GSM6000724	M	M	NA	Agree	0.13	8.81	0.00	18.48	7.82	28.02	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.664819	0.253953	0.075701	0.005526	53.76	4.96	40.64	9584	LP2 (2026-09-30)	PASS	NonPolyA_perM 9584 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000725	M	M	NA	Agree	0.11	5.13	0.00	12.06	5.65	17.34	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.647875	0.216354	0.077645	0.058126	54.81	11.17	33.28	6650	LP2 (2026-09-30)	PASS	NonPolyA_perM 6650 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000726	M	M	NA	Agree	0.05	4.99	0.00	10.78	4.75	18.62	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.685034	0.201398	0.085066	0.028502	54.24	8.84	36.04	12337	LP2 (2026-09-30)	PASS	NonPolyA_perM 12337 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000727	M	M	NA	Agree	0.09	6.72	0.00	17.02	7.27	32.09	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.658123	0.186804	0.070221	0.084852	47.03	12.95	39.21	5553	LP2 (2026-09-30)	PASS	NonPolyA_perM 5553 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000728	M	M	NA	Agree	0.16	11.51	0.00	26.21	11.28	49.90	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.673928	0.173528	0.045252	0.107291	52.22	14.15	32.95	3374	LP2 (2026-09-30)	PASS	NonPolyA_perM 3374 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000729	M	M	NA	Agree	0.16	7.08	0.00	15.90	7.42	23.08	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.553061	0.213306	0.060489	0.173144	37.66	19.70	41.52	6383	LP2 (2026-09-30)	PASS	NonPolyA_perM 6383 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000730	M	M	NA	Agree	0.08	5.40	0.00	12.39	5.18	16.49	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.655062	0.212279	0.080964	0.051696	47.41	9.83	41.98	12450	LP2 (2026-09-30)	PASS	NonPolyA_perM 12450 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000731	M	M	NA	Agree	0.36	15.09	0.00	33.64	13.17	53.19	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.682441	0.247098	0.054823	0.015638	53.96	5.36	39.77	3713	LP2 (2026-09-30)	PASS	NonPolyA_perM 3713 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000732	M	M	NA	Agree	0.05	6.63	0.00	14.57	6.73	26.77	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.697529	0.220392	0.07916	0.002919	55.27	5.59	38.44	9576	LP2 (2026-09-30)	PASS	NonPolyA_perM 9576 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000734	M	M	NA	Agree	0.07	5.08	0.00	10.44	5.06	18.45	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.667493	0.238737	0.092204	0.001567	46.70	5.35	47.27	9886	LP2 (2026-09-30)	PASS	NonPolyA_perM 9886 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000735	M	M	NA	Agree	0.14	4.45	0.00	10.11	3.79	12.43	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.653121	0.222274	0.086188	0.038418	52.02	10.07	37.03	7332	LP2 (2026-09-30)	PASS	NonPolyA_perM 7332 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000736	M	M	NA	Agree	0.10	3.88	0.00	8.81	3.91	8.79	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.602775	0.253723	0.094922	0.048579	58.01	11.59	29.52	8877	LP2 (2026-09-30)	PASS	NonPolyA_perM 8877 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000737	M	M	NA	Agree	0.08	3.73	0.00	8.53	4.27	11.46	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.655138	0.228126	0.098814	0.017922	46.42	7.57	45.28	9188	LP2 (2026-09-30)	PASS	NonPolyA_perM 9188 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000738	M	M	NA	Agree	0.08	6.17	0.00	15.43	6.37	23.66	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.704267	0.201819	0.072528	0.021387	56.43	7.45	35.36	4516	LP2 (2026-09-30)	PASS	NonPolyA_perM 4516 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000739	M	M	NA	Agree	0.02	5.17	0.00	12.50	5.44	20.81	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.713799	0.197014	0.082705	0.006482	51.85	6.32	41.00	9386	LP2 (2026-09-30)	PASS	NonPolyA_perM 9386 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000740	M	M	NA	Agree	0.07	4.88	0.00	10.87	4.79	20.45	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.591419	0.160886	0.068555	0.17914	43.84	21.92	33.43	7014	LP2 (2026-09-30)	PASS	NonPolyA_perM 7014 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000741	M	M	NA	Agree	0.12	7.10	0.00	14.30	5.69	26.22	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.690076	0.198638	0.074711	0.036575	59.41	9.22	30.67	4677	LP2 (2026-09-30)	PASS	NonPolyA_perM 4677 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000742	M	M	NA	Agree	0.08	5.29	0.00	14.75	5.41	22.18	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.645848	0.189186	0.066771	0.098195	49.76	13.67	35.61	11826	LP2 (2026-09-30)	PASS	NonPolyA_perM 11826 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000743	M	M	NA	Agree	0.07	6.08	0.00	14.50	5.88	23.17	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.65203	0.194744	0.074097	0.079129	48.78	13.00	37.46	6252	LP2 (2026-09-30)	PASS	NonPolyA_perM 6252 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000744	M	M	NA	Agree	0.06	3.57	0.00	9.71	3.33	13.02	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.457432	0.089896	0.033332	0.419339	29.85	45.90	23.55	6003	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 6003 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000745	M	M	NA	Agree	0.11	6.89	0.00	14.83	5.69	19.38	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.694761	0.222143	0.077891	0.005206	48.39	5.20	45.66	9302	LP2 (2026-09-30)	PASS	NonPolyA_perM 9302 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000746	M	M	NA	Agree	0.12	7.70	0.00	16.73	7.30	24.86	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.666968	0.240329	0.077489	0.015214	47.98	5.80	45.51	6125	LP2 (2026-09-30)	PASS	NonPolyA_perM 6125 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000747	M	M	NA	Agree	0.44	20.42	0.00	42.20	16.46	65.98	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.669937	0.255137	0.052993	0.021934	57.35	5.45	36.45	2636	LP2 (2026-09-30)	PASS	NonPolyA_perM 2636 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000748	M	M	NA	Agree	0.26	14.12	0.00	27.37	12.26	39.25	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.616594	0.302462	0.062636	0.018308	55.84	5.49	37.85	3618	LP2 (2026-09-30)	PASS	NonPolyA_perM 3618 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000749	M	M	NA	Agree	0.12	5.05	0.00	11.23	4.56	14.93	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.656805	0.230316	0.088175	0.024704	60.17	8.65	30.45	10630	LP2 (2026-09-30)	PASS	NonPolyA_perM 10630 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000750	M	M	NA	Agree	0.14	4.06	0.00	10.43	4.78	10.74	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.494082	0.18081	0.059484	0.265624	36.41	28.03	34.51	8140	LP2 (2026-09-30)	PASS	NonPolyA_perM 8140 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000751	M	M	NA	Agree	0.06	8.11	0.00	16.08	7.63	24.64	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.698322	0.221634	0.079338	0.000706	53.09	5.07	41.17	7171	LP2 (2026-09-30)	PASS	NonPolyA_perM 7171 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000752	M	M	NA	Agree	0.12	3.22	0.00	7.11	3.89	7.61	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.577935	0.218589	0.081006	0.122469	45.29	17.01	36.75	11833	LP2 (2026-09-30)	PASS	NonPolyA_perM 11833 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000753	M	M	NA	Agree	0.19	5.13	0.00	11.08	5.09	13.51	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.559316	0.204539	0.065574	0.170571	43.75	20.02	35.31	7890	LP2 (2026-09-30)	PASS	NonPolyA_perM 7890 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000754	M	M	NA	Agree	0.11	6.71	0.00	14.94	6.94	20.98	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.655539	0.244545	0.081721	0.018195	61.87	8.15	29.21	5784	LP2 (2026-09-30)	PASS	NonPolyA_perM 5784 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000755	M	M	NA	Agree	0.10	5.49	0.00	12.96	4.81	16.99	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.661737	0.201465	0.08884	0.047959	51.06	10.73	37.37	13516	LP2 (2026-09-30)	PASS	NonPolyA_perM 13516 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000756	M	M	NA	Agree	0.08	4.68	0.00	11.93	4.59	13.82	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.601141	0.243125	0.088749	0.066985	47.49	11.73	39.74	14577	LP2 (2026-09-30)	PASS	NonPolyA_perM 14577 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000757	M	M	NA	Agree	0.06	5.30	0.00	10.55	5.41	17.08	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.695152	0.202332	0.094124	0.008392	46.66	6.27	46.27	14344	LP2 (2026-09-30)	PASS	NonPolyA_perM 14344 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000758	M	M	NA	Agree	0.10	4.04	0.00	10.16	3.90	15.45	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.422959	0.098149	0.037039	0.441852	31.57	48.65	19.03	5546	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 5546 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000759	M	M	NA	Agree	0.09	5.03	0.00	11.36	5.36	17.09	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.65906	0.234706	0.09523	0.011004	49.11	6.66	43.53	13052	LP2 (2026-09-30)	PASS	NonPolyA_perM 13052 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000760	M	M	NA	Agree	0.18	5.72	0.00	12.92	5.21	14.66	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.586719	0.255874	0.09294	0.064467	46.90	10.94	41.20	8764	LP2 (2026-09-30)	PASS	NonPolyA_perM 8764 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000761	M	M	NA	Agree	0.24	10.80	0.00	25.37	11.25	27.74	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.630919	0.280465	0.067689	0.020927	55.31	6.55	37.15	5136	LP2 (2026-09-30)	PASS	NonPolyA_perM 5136 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000763	M	M	NA	Agree	0.19	6.85	0.00	16.76	7.34	20.38	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.612003	0.252607	0.08703	0.048359	53.86	10.00	35.40	5870	LP2 (2026-09-30)	PASS	NonPolyA_perM 5870 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000764	M	M	NA	Agree	0.22	6.87	0.00	17.10	7.26	23.47	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.627657	0.249763	0.087718	0.034861	45.59	7.75	45.76	8158	LP2 (2026-09-30)	PASS	NonPolyA_perM 8158 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000766	M	M	NA	Agree	0.08	3.87	0.00	10.34	4.33	11.75	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.416236	0.145337	0.047158	0.391268	29.10	34.42	35.63	8971	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 8971 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000767	M	M	NA	Agree	0.17	5.36	0.00	13.77	6.22	14.06	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.543	0.263785	0.078847	0.114368	47.25	15.15	36.46	8178	LP2 (2026-09-30)	PASS	NonPolyA_perM 8178 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000768	M	M	NA	Agree	0.11	5.71	0.00	12.20	5.12	16.97	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.56781	0.21113	0.068094	0.152965	45.40	18.68	35.00	10761	LP2 (2026-09-30)	PASS	NonPolyA_perM 10761 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000769	M	M	NA	Agree	0.15	5.78	0.00	13.18	5.52	15.69	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.623795	0.242614	0.082942	0.050648	49.99	9.76	39.31	13230	LP2 (2026-09-30)	PASS	NonPolyA_perM 13230 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000770	M	M	NA	Agree	0.18	6.25	0.00	13.43	5.82	15.17	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.528903	0.202612	0.053175	0.21531	37.88	22.81	38.53	6530	LP2 (2026-09-30)	PASS	NonPolyA_perM 6530 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000772	M	M	NA	Agree	0.18	7.35	0.00	16.84	7.00	20.29	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.5869	0.277748	0.069079	0.066273	74.93	12.48	12.10	2324	LP2 (2026-09-30)	PASS	NonPolyA_perM 2324 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000773	M	M	NA	Agree	0.17	6.33	0.00	14.92	6.11	15.22	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.601816	0.271681	0.0847	0.041803	54.14	9.66	35.07	9173	LP2 (2026-09-30)	PASS	NonPolyA_perM 9173 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000774	M	M	NA	Agree	0.12	4.60	0.00	10.52	4.72	9.88	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.587638	0.255837	0.085439	0.071087	44.85	12.26	42.08	8945	LP2 (2026-09-30)	PASS	NonPolyA_perM 8945 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000775	M	M	NA	Agree	0.12	5.90	0.00	10.20	4.60	13.31	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.600125	0.236487	0.088058	0.07533	47.07	12.89	39.15	13542	LP2 (2026-09-30)	PASS	NonPolyA_perM 13542 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000776	M	M	NA	Agree	0.17	7.88	0.00	17.71	7.69	20.78	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.639811	0.263487	0.084192	0.012511	46.07	5.97	47.07	9265	LP2 (2026-09-30)	PASS	NonPolyA_perM 9265 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000777	M	M	NA	Agree	0.16	7.20	0.00	16.98	7.40	19.48	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.610692	0.281213	0.082611	0.025484	55.81	8.23	35.11	6108	LP2 (2026-09-30)	PASS	NonPolyA_perM 6108 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000778	M	M	NA	Agree	0.15	4.98	0.00	11.38	5.39	13.06	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.585644	0.252776	0.084793	0.076787	51.76	13.14	33.94	9174	LP2 (2026-09-30)	PASS	NonPolyA_perM 9174 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000779	M	M	NA	Agree	0.11	3.49	0.00	9.33	4.06	11.74	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.611308	0.24219	0.099788	0.046714	44.65	9.52	44.95	15664	LP2 (2026-09-30)	PASS	NonPolyA_perM 15664 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000780	M	M	NA	Agree	0.17	6.09	0.00	14.09	5.98	17.03	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.608505	0.279995	0.089037	0.022464	48.53	7.33	43.30	7506	LP2 (2026-09-30)	PASS	NonPolyA_perM 7506 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000781	M	M	NA	Agree	0.13	5.19	0.00	11.75	5.78	13.04	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.570693	0.272732	0.08661	0.069965	53.55	12.84	32.42	9369	LP2 (2026-09-30)	PASS	NonPolyA_perM 9369 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000782	M	M	NA	Agree	0.07	4.91	0.00	12.60	5.07	18.07	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.627553	0.244111	0.090055	0.03828	54.44	9.94	34.83	12312	LP2 (2026-09-30)	PASS	NonPolyA_perM 12312 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000783	M	M	NA	Agree	0.06	4.34	0.00	10.71	4.28	16.89	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.588248	0.166819	0.070231	0.174702	45.79	22.80	30.50	8362	LP2 (2026-09-30)	PASS	NonPolyA_perM 8362 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000784	M	M	NA	Agree	0.04	4.75	0.00	12.05	4.30	16.59	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.655132	0.199591	0.095071	0.050206	46.84	10.98	41.35	13690	LP2 (2026-09-30)	PASS	NonPolyA_perM 13690 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000786	M	M	NA	Agree	0.11	5.31	0.00	16.25	5.11	19.35	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.47569	0.139243	0.045978	0.339089	43.68	37.82	17.66	7054	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 7054 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000787	M	M	NA	Agree	0.15	7.93	0.00	19.16	7.48	21.82	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.586837	0.259723	0.074662	0.078778	48.49	11.78	38.86	7338	LP2 (2026-09-30)	PASS	NonPolyA_perM 7338 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000788	M	M	NA	Agree	0.06	5.36	0.00	11.54	5.21	17.85	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.644901	0.198507	0.08568	0.070913	45.78	11.15	42.36	13461	LP2 (2026-09-30)	PASS	NonPolyA_perM 13461 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000789	M	M	NA	Agree	0.06	5.99	0.00	14.46	6.21	19.49	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.616833	0.209045	0.07992	0.094202	50.61	13.37	35.18	9785	LP2 (2026-09-30)	PASS	NonPolyA_perM 9785 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000790	M	M	NA	Agree	0.09	5.74	0.00	14.30	6.13	19.34	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.624791	0.202472	0.077249	0.095488	51.98	15.18	31.85	7490	LP2 (2026-09-30)	PASS	NonPolyA_perM 7490 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000791	M	M	NA	Agree	0.05	4.77	0.00	11.84	4.75	17.97	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.66899	0.219562	0.093625	0.017824	45.08	7.12	46.96	13492	LP2 (2026-09-30)	PASS	NonPolyA_perM 13492 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000792	M	M	NA	Agree	0.06	6.20	0.00	13.37	4.79	16.70	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.648822	0.252519	0.089553	0.009106	50.39	6.40	42.19	14797	LP2 (2026-09-30)	PASS	NonPolyA_perM 14797 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000793	M	M	NA	Agree	0.08	5.46	0.00	12.30	6.35	15.51	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.581338	0.154877	0.050808	0.212977	36.39	24.21	38.58	7345	LP2 (2026-09-30)	PASS	NonPolyA_perM 7345 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000794	M	M	NA	Agree	0.08	9.84	0.00	22.91	8.32	26.99	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.672074	0.229824	0.070928	0.027174	52.80	7.20	39.19	6640	LP2 (2026-09-30)	PASS	NonPolyA_perM 6640 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000795	M	M	NA	Agree	0.11	7.78	0.00	18.94	7.74	28.54	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.649804	0.236276	0.075674	0.038245	52.62	8.82	37.71	5748	LP2 (2026-09-30)	PASS	NonPolyA_perM 5748 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000796	M	M	NA	Agree	0.10	5.51	0.00	13.86	4.68	16.34	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.454786	0.133744	0.036933	0.374537	33.89	40.19	25.34	4747	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 4747 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000797	M	M	NA	Agree	0.07	8.69	0.00	17.57	7.61	22.03	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.664301	0.24848	0.078116	0.009103	54.49	5.81	39.12	7835	LP2 (2026-09-30)	PASS	NonPolyA_perM 7835 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000799	M	M	NA	Agree	0.05	8.33	0.00	15.96	6.86	21.17	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.664461	0.242297	0.083287	0.009955	51.26	6.59	41.36	10798	LP2 (2026-09-30)	PASS	NonPolyA_perM 10798 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000800	M	M	NA	Agree	0.06	8.02	0.00	16.17	6.62	22.36	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.663821	0.242628	0.083564	0.009987	51.51	6.51	41.16	10044	LP2 (2026-09-30)	PASS	NonPolyA_perM 10044 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000801	M	M	NA	Agree	0.05	6.87	0.00	14.27	6.37	21.10	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.652469	0.253458	0.084534	0.009539	60.44	7.09	31.69	8501	LP2 (2026-09-30)	PASS	NonPolyA_perM 8501 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000802	M	M	NA	Agree	0.07	5.56	0.06	12.93	5.56	17.12	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.52568	0.16656	0.052693	0.255067	42.63	29.13	27.59	5527	LP2 (2026-09-30)	PASS	NonPolyA_perM 5527 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000803	M	M	NA	Agree	0.12	6.60	0.00	13.11	5.86	19.80	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.54363	0.19234	0.066909	0.197121	42.89	21.98	34.31	8302	LP2 (2026-09-30)	PASS	NonPolyA_perM 8302 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000804	M	M	NA	Agree	0.10	4.17	0.00	10.62	4.23	16.72	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.463465	0.116902	0.040604	0.379029	35.17	43.72	20.30	6073	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 6073 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not
GSM6000805	M	M	NA	Agree	0.12	3.98	0.00	7.70	4.06	9.67	SECOND_READ_TRANSCRIPTION_STRAND	RRNA_DEPLETED	0.441891	0.105237	0.027509	0.425363	28.58	48.45	22.27	5264	LP2 (2026-09-30)	LOW_MAPPING	NonPolyA_perM 5264 >= 700: non-polyadenylated small RNAs retained, as rRNA depletion does and oligo-dT selection does not